LOCUS       DASEAA010000001        62254 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.001, whole genome shotgun sequence.
ACCESSION   DASEAA010000001 DASEAA010000000
VERSION     DASEAA010000001.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 62254)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 62254)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..62254
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.001"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(7..381)
                     /locus_tag="U0342_000001"
     CDS             complement(7..381)
                     /locus_tag="U0342_000001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM2421383.1"
                     /translation="MAKPYGVVIISHSKDVAKGVHDIIKEIAPDVSITHAGGTEDGRI
                     GTSFDAVNEAIESNEANKVYTFYDLGSAKMNIETVEEISEKEIILFNAPILEGAYATA
                     AQVQMDEKPEVIAANLKTIEIK"
     gene            complement(385..981)
                     /gene="dhaL"
                     /locus_tag="U0342_000002"
     CDS             complement(385..981)
                     /gene="dhaL"
                     /locus_tag="U0342_000002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM2421384.1"
                     /translation="MTYDKDWALRWLNDFGERVQENKQLLSDLDQAIGDGDHGINMAR
                     GLGELKKAFTEKEPADLKDVFKTAGMTMVSKVGGASGPLYGTAFLNMSKAVDSETIDA
                     EGLTKVLEAGLEGIEKRGKSHAGEKTMIDVWEPVVNALHQEDLTDDVVEAALQKTKDL
                     KATKGRASYLGERSIGHLDPGAYSSALLFHAMLQTEVS"
     gene            complement(1003..1992)
                     /gene="dhaK"
                     /locus_tag="U0342_000003"
     CDS             complement(1003..1992)
                     /gene="dhaK"
                     /locus_tag="U0342_000003"
                     /EC_number="2.7.1.121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM2421385.1"
                     /translation="MKKILNGTDQVVEQMVEGLVKSHADVVHRVEGTRVIARNDKRPG
                     KVGLVSGGGSGHEPAHAGYVGRGMLSAAVCGDVFTSPTPDQIYEGIKAADQGAGVLLI
                     VKNYTGDVMNFEMAADLADADDIKVEQIVVDDDIAVEDSTFTTGRRGVAGTVLVHKII
                     GAAAEAGASLDELKALGEKVIASVKTLGVALTPCTVPEVGHPGFELGDDEIELGIGIH
                     GEPGFTREKIMPSASLAKQLYERISNESKFLPGDKVVVLVNGMGATPLMEQYVFANDV
                     HELLKNAGVQVEKTLVGDYMTSLEMAGLSLTILKLEDEKWVDMLKLPVDTIAW"
     gene            2176..3555
                     /locus_tag="U0342_000004"
     CDS             2176..3555
                     /locus_tag="U0342_000004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2421386.1"
                     /translation="MRNQSKMPLVERLDAHAKSCPISLHVPGHKSGAIYPDAWQKFLK
                     WDVTEITGMDDLHHPEDVILEAEELLAECYGSKKSYFLVNGTSGGSLAVIMATLKHGE
                     KVLVPRDAHKSILHGIELAGGEPIFLTPATNEEVGVASGVTTELLEETLHNHPDIKLC
                     IFTYPSYYGTTFNLHKCIQIAHDFGAVVFVDEAHGAHFLTSSEFPKSAVELGADVVVQ
                     SAHKTLPALTMGSYLHVVNDLPIFEKLPYYLQVFQTSSPSYLIMASLDAARKYAATYT
                     AADVEAFWKMRARWIKWLTKNKFDVILPDDPLKIIVRKTGYTGYELQAIFEESSYFPE
                     LADESQVLLILPLIKKGIDFTPISRIHSPVKKEIAKEPYEMSAPFASGLALTYEEMHA
                     RATEFVLLDEATTRVSAETISLYPPGIPAIIRGESITEKHIRELKNIRTRHYQGGEKL
                     AENYIRVFR"
     gene            3608..4234
                     /locus_tag="U0342_000005"
     CDS             3608..4234
                     /locus_tag="U0342_000005"
                     /EC_number="2.7.4.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dTMP kinase"
                     /protein_id="HEM2421387.1"
                     /translation="MKAIFITLEGPDGSGKTTVGTLLNQKMTEAGIDFIKTREPGGSP
                     ISEKVRNIVLGIGNEEMDPKTEVLLIAGARRQHVVETIRPALAAGKTVLCDRFMDSSL
                     AYQGAGRDMNMEQVLQVNLYAIEDTLPDRTYYLDVPAEVGLARIAANKGREVNRLDKE
                     DITYHEKVQAGYEKVINMFPERFMRVDATKTPEEITETILADILRQLA"
     gene            4343..4672
                     /locus_tag="U0342_000006"
     CDS             4343..4672
                     /locus_tag="U0342_000006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP receptor"
                     /protein_id="HEM2421388.1"
                     /translation="MKLIFAIVQDQDSNRLSDALTKGNFGATKLATTGGFLKAGNTTF
                     IIGTEDERVEDALAIIKENCKAREQMMTPSASLGVTVDTYVPYPIEVQVGGATVFVMP
                     VESFHHF"
     gene            complement(4903..6678)
                     /locus_tag="U0342_000007"
     CDS             complement(4903..6678)
                     /locus_tag="U0342_000007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-beta-N-acetylmuramoylhydrolase"
                     /protein_id="HEM2421389.1"
                     /translation="MQKTRKERILEALQEEKKNKKSKKFKTGATIAGVTAIATSITVP
                     GIEVIVSADETAPADEASKSAEANTTKETPATATPENTTEPTVEAKQTETKEQTKTAE
                     ENQAAAKQVEKAPAEPATVSNPDNATSSSTPATYNLLQKSALRSGATVQSFIQTIQAS
                     SSQIAAENDLYASVMIAQAILESAYGTSELGSAPNYNLFGIKGAYNGQSYTKQTLEDD
                     GKGNYYTITAKFRKYPSYHQSLEDYAQVIRKGPSWNPNYYSKVWKSNTTSYKDATKAL
                     TGTYATDTAYATKLNDLISRYNLTQYDSGKTTGGNSGSTGNTGNSSNTGNTSNAKIYT
                     VVKGDSLWRIANNHKVTVANLKAWNNLKSDFIYPGQKLKVSAGSTTSDTNTSKPSTGT
                     STSKPSTGTSTNAKVYTVVKGDSLWRIANNHKVTIANLKSWNNLKSDFIYPGQKLKVS
                     AGSTSNTNTSKPSTNTNTSKPSTNTNTNAKVYTVAKGDSLWRIANNHKVTIANLKSWN
                     NLKSDFIYPGQKLKVSAGTTTNTNTAKPSTNKPSNSTVKTYTVKKGDSLWAISRQYKT
                     TVDNIKAWNKLTSNMIHVGQKLTIK"
     gene            6840..7406
                     /locus_tag="U0342_000008"
     CDS             6840..7406
                     /locus_tag="U0342_000008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2421390.1"
                     /translation="MITNESIMDATLCMMAKHGIKGSTTRQLAEAAGINEATIFKKFK
                     SKDNLIHMTLEVQFESMKAEINQFFDKDFESAKVFLRQASQFISDIYEKYRDFMVISV
                     REMGSKDMEFIDPSIVEYLYERVNQKVKEMVPSKNSAQEADAISLILNSVILLIMVEK
                     VRDDIYKRPPTITTTADSLADVLLKLLK"
     gene            7960..10530
                     /gene="mgtA"
                     /locus_tag="U0342_000009"
     CDS             7960..10530
                     /gene="mgtA"
                     /locus_tag="U0342_000009"
                     /EC_number="7.2.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium-translocating P-type ATPase"
                     /protein_id="HEM2421391.1"
                     /translation="MKKLHVKKQGNNLLKESQIGKEKVLEKLGVMETGLTNVEVTERL
                     AEFGPNQTVEEKKVSNLRLFIRAFNDPFIYILAMLMVVSYLTDDMEATVIMALMILAS
                     GILGFIQTSRAERASYALKNMVKNRVNVIRNGSMDLIMQDAIVPGDLIEISAGDIIPA
                     DARVISATDLLINQSALTGESIPAEKFVEDKSANPEIFERENLLFMGTDVLSGHGRAV
                     VLRTGSSTFFGSLSIAATERRGDTSFDKGVKSISKLLFYFMMVMVPIVFMINGLMKGN
                     WLEAFLYAVAIAVGLTPEMLPMIVSTNLAKGAINMSKKKVIMKELSAIQNIGAMDILC
                     TDKTGTLTEDKLELIKYIDSAGETSERVLKMAYLNSYFQTGWKNVLDHAVIAKLDEST
                     AAAWKKVGEIPFNFDRRRLSVVVENKAETRMITKGAVEEMLTVCTHKEFGGAVSTLSE
                     SEKSELQDMCAEMNRSGIRVIAVAYKTGRVGEAFTKTDEEQMIIAGFLGFRDPVKAST
                     KEAIAHLFKNQINVKVLTGDNEIVTKRICQEVGIPANGFLLGADIEELSDEELTRELR
                     KYHIFAKLTPMQKSRIIGLLKKAGHTVGFLGDGINDAPALRKADVGISVDTAADITKD
                     ASSVILLEKSLTVLNDAVMEGRNVFGNILKYLKMTASSNFGNVFSVLVASAFIPFLPM
                     LSLHLLLQNLLYDFSQLTLPWDKMDRSFLKKPHQWEQKGMLRFILCIGPVSSIFDIAT
                     FLIMWFVFSANTVAEQALFHSGWFVVGLLTQTLVVHMIRTEKIPFIQSRAAAPVMIAT
                     LSVMALGIIIPFTGFGHSIGFVSLPGSYFPWLILILVGYMATMQLVKTIYIRKFREWI
                     "
     gene            10531..11661
                     /locus_tag="U0342_000010"
     CDS             10531..11661
                     /locus_tag="U0342_000010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2421392.1"
                     /translation="MRAGRVLFVTYILLAIWSLLLVYSTSYGVAVMRYKVEPSYFFHR
                     QLLFYGLGFLGLLVCSRINVQLFYLRRTLRILAGSLLGLLLLVLLTGSAANNAQRWLS
                     IAGVTFQPTEMVKLLLILVIATVFLKKGCGVRVQYWLLGFLFLTVGLVFLQPDLGTAL
                     ILGVIGVALFLTSGVGLTRLVRVAIWSFGLLLLVAMLLYFFHPDFFSSAKLGRFAFLD
                     PFNLDNLDASYQLRNGYYAIGSGGIFGNGLGGSIQKLGYLPEPHTDFIMTVIAEELGV
                     FGVIWTIFLLMMLSFTALYIAISSHFIFDSMVCIGVSSWVSVQTFLNLGGVSGIIPLT
                     GVPLPFISYGGSSVVMLSCAVGFVLAAARRNVLAKTREVVYL"
     gene            11658..12779
                     /locus_tag="U0342_000011"
     CDS             11658..12779
                     /locus_tag="U0342_000011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2421393.1"
                     /translation="MKRDVLYNRIILSVFLLSLVSCVAIYYAQQTNQYNTNFLGMQLV
                     FLAIGTLTCFGVSRLPVEFLRHHAIWLYVIMVITLLGILIPNPLVQNINGATRWYRFA
                     GLSFQPSEVVKSIFIFVLAHFAVKYQAQKWKQLGILTVLTGIVLLLIMKQPDLGTTIV
                     YGVTALAIILLAIKSTKLMVGIITLILTAATVGMYVVVYHISLLEKIGFHAYQFSRIQ
                     TWLDPTTDPDAVYQLNLSIKAVGSGMMTGSSGTNAYIPESHTDMIFSTIGHQFGFVGV
                     SLLLILFMLLIHQLIMAALLMKNTFSSLVLAGFAVSFAFNIFENIGMTVGLMPLTGIP
                     LPFISYGGSAVLGNFIAVGVVLAIIRSDADLIEEKNQLS"
     gene            complement(12801..13103)
                     /locus_tag="U0342_000012"
     CDS             complement(12801..13103)
                     /locus_tag="U0342_000012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2421394.1"
                     /translation="MDLEQTIMSLIVFGGNAKSDAMLAIDSAKKGDFAQADEQIAQAE
                     QALLEAHHSQTKLIQGEARGEKTEVSLLLVHAQDHLMNAITFKDLAKEIVDLYKNK"
     gene            complement(13140..14447)
                     /locus_tag="U0342_000013"
     CDS             complement(13140..14447)
                     /locus_tag="U0342_000013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2421395.1"
                     /translation="MNGFIAFMEKYFIPYAAKIGGQRHLVAIRDGFITTMPLMILGSF
                     AVLINNFPIPAYQKFMNNLFGEGTWQAFGGNVWNGTFAILALLIAFTVAYNLAKSYDK
                     DPLSSAVVSVATFFTIGAIAPGADGVANTGGLGSTGLFLALIIAILSTEIFTRLSGSP
                     KLIINMPDGVPPAVSRSFAALFPAMITVSIFGLITAFFQAAGVTNLVISFYELVQEPF
                     MGLANSLPAALLLAFVSAFLWFFGLHGANIIDPFMQTINIPAIEANVKALEAGKELPY
                     IVNKPFFDSFVNLGGTGATIGLIIAIFIVARKHKAYMTVSKLSAAPGIFNINEPMMFG
                     LPIVLNPIMFIPYILAPLVLVTVAYFATAIGWVPACTIVTPWTTPPIIGGALATQSIA
                     GGVLAAVNLGLSILIFLPFAKIAQIQELRREKEALAAEGVTAE"
     gene            complement(14582..14887)
                     /locus_tag="U0342_000014"
     CDS             complement(14582..14887)
                     /locus_tag="U0342_000014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2421396.1"
                     /translation="MKTIMLVCSAGMSTSLLVTKMEKAAAEKGLEAKIFAVAEAEAAN
                     HLDEIDVLLLGPQVRFLEGNMKKKLEPKGIPLAVINSVDYGMMKGDKVLEQALELMK"
     gene            15141..15230
                     /locus_tag="U0342_000015"
     CDS             15141..15230
                     /locus_tag="U0342_000015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015455298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit F"
                     /protein_id="HEM2421397.1"
                     /translation="MGVVLVIAGIIGLGLLVYLFYVLFRGEDL"
     gene            15227..16912
                     /gene="kdpA"
                     /locus_tag="U0342_000016"
     CDS             15227..16912
                     /gene="kdpA"
                     /locus_tag="U0342_000016"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpA"
                     /protein_id="HEM2421398.1"
                     /translation="MKYIVMQDAFFVVLLLVLAVPLGIYMYKVMIGEKVFLSRVLEPV
                     ERFGYRLMGVSEVGMSAKRYAVSVLAFSAVGFVFVMAVLMLQGFLPLNPEGMKGLSFS
                     LAFNTAASFVSNTNWQAYSGEAALSYFSQSIGLTVQNFVSAATGIAVLFAVIRGFIWK
                     KQKTIGNFWQDLFRVTLYILLPLSLILALLLVSQGVVQSFADYSVVETLENGAKQLIP
                     LGPAASQIAIKQLGTNGGGFFGANSAFPFENPSSFTNLIEMLAILLIPVALVVMFGRA
                     VKDSKQGRAIMTAMMIVFVIGVVAITISEQFAGPHYQGVATSGSMEGKEVRFGVGGSS
                     LFAASTTAASNGAVNAMHDSLTPLGGLVPMFFMQLGEVVFGGVGSGLYGMIGFIILTV
                     FIAGLLVGRTPEYLGKKIEPYDMKMVCLLILVPPLLTLFGTAVAVMMPSVQASVSASG
                     AHGFSEVLYAFTSMGNNNGSAFAGFAADTTFTNMVGAVMMLLARFIPLVAALYLAQNM
                     AGKSSVAASSGTLSTKNGMFIGLLIGVVVLVGALSFLPALALGPIADFFTTFK"
     gene            16924..18969
                     /gene="kdpB"
                     /locus_tag="U0342_000017"
     CDS             16924..18969
                     /gene="kdpB"
                     /locus_tag="U0342_000017"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium-transporting ATPase subunit KdpB"
                     /protein_id="HEM2421399.1"
                     /translation="MMEKGIWKDALIQSTKKLSPKLQVKNPVMLLVYVGAILATSLYF
                     LGFFGISDEKSGYTLAIALILWFTVLFANFAEAIAEGRGRAQADSLKMARKDVLARKL
                     KNIDDKTDVIEIASNDLKKGDIVYVLANEQIPMDGEVIEGAASVDESAITGESAPVIR
                     ESGGDRSAVTGGTTLVSDWLVVRVTAVSGESFLDKMIAMVEGASRKKTPNEIALQILL
                     VTLSIIFLAVSATLLPFTEFASKQAGAGSAISITNVIALLVCLAPTTIGALLSSIGIA
                     GMSRLNQANVLAMSGRAIEAAGDVDVLLLDKTGTITLGNRKASEFLPVDGVTEQELAD
                     AAQLSSIADETAEGRSIVVLAKERFDIRGRDFAEMHAEFVPFTATTRMSGIDYQENTI
                     RKGAADAVRAYVTANGGTYPKECDAIVSKVAGAGGTPLVVVRNNKVLGVIYLKDIVKN
                     GVKERFLDLRKMGIKTIMITGDNPMTAAAIAAEAGVDDFLAEATPEAKLELIREYQRE
                     GHLVAMTGDGTNDAPALAQADVAVAMNTGTQAAKEAGNMVDLDSSPTKLIDIVRIGKQ
                     LLMTRGALTTFSVANDLAKYFAIIPVLFYGIFPQLEALNLMGLTSPTSAILSAIIYNA
                     VIIIILIPLSLKGVKYREMPAGKLLSRNMLIYGLGGLIAPFIAIKLIDMLLTVLGIV"
     gene            18984..19556
                     /gene="kdpC"
                     /locus_tag="U0342_000018"
     CDS             18984..19556
                     /gene="kdpC"
                     /locus_tag="U0342_000018"
                     /EC_number="7.2.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="K(+)-transporting ATPase subunit C"
                     /protein_id="HEM2421400.1"
                     /translation="MKRFMQIWKPAVVGFLLLTLMCGVVYPGIVTIFASAAFHDKANG
                     SIIEEKRADGTTGKVGSAEIGQTFTKPEYLIGRAASDGVATNLNPTSEEQKQLVEKRI
                     AWWHKLDPTNNRVIPMDLVTASASGVDPDISEAAAAYQVDRISRERGISTKQVKEIIA
                     EHTSDRLLGFWGEPTVNVLQVNLALDRLKM"
     gene            19572..22262
                     /locus_tag="U0342_000019"
     CDS             19572..22262
                     /locus_tag="U0342_000019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase KdpD"
                     /protein_id="HEM2421401.1"
                     /translation="METNRPSPDALLVNLQEETDSSVGKLKIYFGFAAGVGKTYAMLS
                     DAKDQLAAGVDVVAGYIEPHAREETLRMLEGIPIIPPKAITHKNIALKEFDLDEALKR
                     KPELILVDELAHTNASGVRNKKRFQDVEELLQAGIDVYTTVNVQHIESLNDIVEGITK
                     VAVRETIPDYVFDEADRVKLIDIEPDELLKRLEQGKIYQPARAKTAMQNFFTRENLKL
                     LREIAMRKAADRISHEYDQTGVYPEKRASSKWLVCIGTSPSSAKLIRWTARTAEAFRA
                     PWTALYIENEENDYMTKAEKKCLRETMELAERLGAEIVTLAGHDIAETVAEYARLTGV
                     TNIVVGKSRRRMGLRSLFEDDFEDRLITHLDNVDMHIIPSSQPKTKKRRMKMRFKSFL
                     TWHDMAKMILLLTLATAICVGLSEFGIGDQNVIMVYILSVLIISRVTSGYVYGVMGSI
                     IGVMLFNFFFTTPLYTFNTIQAGYPVTFGIMLLVALITSALTVRIKTQASLAVERERR
                     TEVLYEINKRLLVTRNLKGIIDLTNEYILHLFSRSVIFYSADPAKSNKGIFVQAEGKE
                     DASALLSADEEAVAHWVFKNKKRAGAGTDTLMGAFGYYMPVMSQGKVLGVIGVSCSPE
                     DGPLTQDNRIFLRMISSQVALALERQYLSEEQRQIVIESAKEKMRSNLLRAISHDLRT
                     PLTGIVGASSALLEKETELDKETEHNLIKGIKDDSGWLIRMVENLLSVTRISEGLVSL
                     ERAPEAVEEIVGEAVGRIKKRFADRTIHVKVPRDLLMVPMDGTLIEQVLINLMENALR
                     HGGTGAEVWVDVTKTKQSAIFSVRDNGKGIPEKRLPDLFDTFAVEARERSDMSRGLGL
                     GLSICMSIIRAHDGTLEAKNNKHGGATFWFTLPLDGGDGK"
     gene            22259..22954
                     /locus_tag="U0342_000020"
     CDS             22259..22954
                     /locus_tag="U0342_000020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2421402.1"
                     /translation="MNSKRLVLIVEDEEGISNFISAVLTASDYSVIKAVNGKEALEQT
                     ASHSPDVVLLDLGLPDVEGLDVLRDIRVWSKVPIIVVSARDHEREKVTALDLGADDYI
                     TKPFGTSELLARIRTALRHIQPSSKEAPNDHIIRIQDLYIDDDRRLVKMGDKEIHFTP
                     IEYKILLLLARHAGKVLTHDFIIREIWGPYPSENQALRVNMSNIRRKIEQNPAEPAYI
                     LTEVGVGYRMAEE"
     gene            22995..23807
                     /locus_tag="U0342_000021"
     CDS             22995..23807
                     /locus_tag="U0342_000021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2421403.1"
                     /translation="MHKTIRSVDVYYEKYGEGIPIIMIHGFGPDSQLMIGCMEPVFDK
                     ESPFSRIYVDLPGMGKTENYDSIQNADHVLTLLLEFIEAVIPGEQFVLAGESYGGYLA
                     RGIAAKMPDRVLGVLLICPVIYPEKERRTLPEQKVMYQDDTFVRSLSKEDRAYFSKSG
                     VILTARNWNRFLAEVMAGMINADGEFLDRLSANYALSFDPDEKAQFDVPALFLFGRQD
                     DHVGYADGLTLLEKYPHASIAILDFAGHNLQIEQPKIFTTMVEDFLFRVKPE"
     gene            complement(23809..25065)
                     /locus_tag="U0342_000022"
     CDS             complement(23809..25065)
                     /locus_tag="U0342_000022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HEM2421404.1"
                     /translation="MHRAVIFCASILNRFFASVECVKRRLNPLEAYLVVMSNADRAGG
                     LVLAATPKMKQEHHIKTGSRMYELPTWDKRIIIAPPRMKLYLKVNAMIQAIFRRYVPA
                     EFIHVYSIDECFLDITGSHLLFGSTEEIVRKIQCDILEELRLYVTVGIGDNPLLAKLA
                     LDNVAKNRDDGIAEWRYEDVPETIWKIRHLDDVCGIGRRTAVRLQKMGIFNMYQLSQT
                     PPQVLKNAMGVVGEQLYYHAHGIDYSLLNEKYVPVSKSYGKSQILEKDYHVPAEVEIV
                     IREMVEEVAMRLRQNHVDTAVIHLSIGYSKYSIKKGFSHQAKIPPTSSSHALIPYFLQ
                     LFRRYDEREPVRSIAISCGKITLKTGLQLNLFEDATRTLNHEQLEITVDKIRSRYGFK
                     SLMHASSLLNGATGLKRSEMVGGHKG"
     gene            complement(25078..25419)
                     /locus_tag="U0342_000023"
     CDS             complement(25078..25419)
                     /locus_tag="U0342_000023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421405.1"
                     /translation="MSYQDRGMKKWGGFLLSEHTEAMQDAEPTLVWKEAMTTEFIESV
                     LASAMTHQSTLVIQKKPLNPESAPENDIIGRISGVENNTIYIKNSEGTVPLSFSAIRN
                     VEERSVEKWYK"
     gene            complement(25618..26073)
                     /gene="rpiB"
                     /locus_tag="U0342_000024"
     CDS             complement(25618..26073)
                     /gene="rpiB"
                     /locus_tag="U0342_000024"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2421406.1"
                     /translation="MTVSKVAIASDHGGIELRKSIISYLESVGISYEEFGPEAPESVD
                     YPGLAITVSEKVVNQEVDRGILVCGTGIGMSIAANKVKGIRCALVGDTFSAHATREHN
                     DTNVLALGARVIGPGLAEDIVKIWLETAYEGGRHANRVGQITAYEDSQA"
     gene            complement(26119..26589)
                     /locus_tag="U0342_000025"
     CDS             complement(26119..26589)
                     /locus_tag="U0342_000025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM2421407.1"
                     /translation="MSAYKRILVGVDGSNEAEAALRRAVQFAKMDGATLGIGFVADVR
                     RIAPLIDYEQTYAKKAKAYGEELVEMYKKEAEKAGVSHVETFVHFGTPKTTFNKKITR
                     NFEPDLILVGATGLSATEQFILGSVSEYTAAHAPCDVIIVHAKPWRNRKTVEKL"
     gene            26705..27511
                     /locus_tag="U0342_000026"
     CDS             26705..27511
                     /locus_tag="U0342_000026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2421408.1"
                     /translation="MAKLETFYPIVATPKRAGYKEYLPSAVLTGYIRCFWEADDKNFP
                     GNNLVVPDLCADIIFTIDSKTGLVTDAIFVGVSDAPFESDDESNTELFAVRFYAWSLF
                     LFVEQDLTGSMNRVKEPEEMFAGFVSFFQERFAEMTTNMERIALLEEFLLRKLMMLGK
                     QVHPDFLNGIDKLLQNPNQLALGAVSVRQLERLFQKHMGLAPKQTAKLIRFQKVLQAL
                     YENPSVPGAELAYLHGFTDQAHLIKQFKRYSNHTPEEMKQIFLQNVANIQ"
     gene            27557..27925
                     /locus_tag="U0342_000027"
     CDS             27557..27925
                     /locus_tag="U0342_000027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2421409.1"
                     /translation="MINEFVCTNISTQDPAALVAFYHEKLGIPIVFEGYDNYDGAKLG
                     FSEKAPGIIVWNNSKWGEASESKVEFVFSCDTNLDEMYRELQTAGVETPEPRVAEWGG
                     RELNLLDPDGNKIMILEPAQ"
     gene            27922..28284
                     /locus_tag="U0342_000028"
     CDS             27922..28284
                     /locus_tag="U0342_000028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM2421410.1"
                     /translation="MSDEFAWIQKEISGLKGVQYSFKEEWGAERYHVLDQLMAMRGTN
                     KEGQPILTLKCDAEKSEQLRAENRAIVPGYYMNKRVWISVLLEEERDKDLIRALIQHA
                     YSEAKNKLPKYKQAELFD"
     gene            28358..29170
                     /locus_tag="U0342_000029"
     CDS             28358..29170
                     /locus_tag="U0342_000029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421411.1"
                     /translation="MDINMFILYFFIYSVLGWAWEEIFCSISEKKLVYRGFLYGPYCP
                     IYGFGVTTVLMMILPFQNNLWALFIFSMIICTVIEYVTATILEALFHTTWWDYHNWPL
                     NVKGRICLPISIFWGFACIIVVRFLHPLVTEFADWILSWGGWIIPALIVVLMLIDTIK
                     SVTSMLSFQKALAEFNEKLTAQANELKASVKERAKEFEEGLLKKQENVDMKIAEIEAK
                     RKQDKELAASMRKLKFNERRMLKSFPKMKVKRAAPFKNFNKSLLRVDKQKRK"
     gene            29540..31609
                     /locus_tag="U0342_000030"
     CDS             29540..31609
                     /locus_tag="U0342_000030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2421412.1"
                     /translation="MYLDERSNSLLKELLRHPDTSSTNLQAKFGLTRRQVDYSFQKIN
                     NWLEEQTYPKIHRAANGRFIVEPDLFQIIGEEDGEKTDWYIPSEKERASLIILMLTTG
                     SEELSLNHFISELEVSKNTVLRDLKLVQKTLEKFNLEVKYSRMRGYLIDGDEWNQRTA
                     LIYAAEHIIESFGGEEYLQDFMQVDEARIKELREKLEQVEHHLNLHFIDNKMQILPYI
                     LEAVFRRMKKGQTITTSFLIDYNELSDTREYGAAEIFIEEEPNMPEAERMYITLQLLT
                     SNVLPKQYLKSEETHKLRLALEQVLSEFEKKACIQLVDKESLLEKLFAHIKPAYYRIK
                     YHLTTDYSILDKIDQEFQAVHYIVKESLAPLERFIGSKVPENESIFITLFIGGHLIES
                     TEKLQTRLKAVVVCPNGLSISRLMEKTLRSLFPEIFFYQAMSIREFEQTKLGYDIVFS
                     AVPLSTDKKFFLINQLMDGKERLELRRRVMRAVYLVDEVNISVDQLMKTISKFADIKD
                     AARLEKVLADYLMPVPEENTSKHEGKSTLADLLEVTRITRKKSVKDWHEAIYHAALPL
                     LSAGVVEPAYVEEMKRQYPAPIMNIILRNTIAIPHAETEKGVNSLGMSLLYLEEGLPL
                     EGGKELHFIVVIAAIDKNAHFTALLQLMELSENKKELKKLADAANTEEMHQIIKNFTD
                     LETKKTM"
     gene            31643..32107
                     /locus_tag="U0342_000031"
     CDS             31643..32107
                     /locus_tag="U0342_000031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2421413.1"
                     /translation="MDLVQFLKKGMVWVQSDIEKQEDLFQMVAESGKSEGYVTDDFLT
                     RLTDREQTFPTGLKLDGYGVALPHTDPECVTEQFIAVITVKDGIPFKLMEDAGQTVEA
                     NLIFVLGLNEPHSQLAVLQQLMGTIQDKDNVAALLRAKDEDEVKQILETITV"
     gene            32165..32446
                     /locus_tag="U0342_000032"
     CDS             32165..32446
                     /locus_tag="U0342_000032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2421414.1"
                     /translation="MGQFKILVACGAGIATSTVVTDRVERLVKENNVDAEVKQIKISE
                     AASMQDGADLIVSTTILPTTYKIPAIIATSYITGMGMEELDEEILAHLK"
     gene            32507..33778
                     /locus_tag="U0342_000033"
     CDS             32507..33778
                     /locus_tag="U0342_000033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466187.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HEM2421415.1"
                     /translation="MDTLLSGVQYVLNLGPTVILPIMIFFIALIFRVPAKKALRSAIT
                     IGIGFVGINLVISLLSSNLGPAAQQMVERFGLNLTIIDAGWPAAAAASWASPVAAILI
                     PICLVVNLALIFFKVTKTLDIDIWNYWHFIAAGATGYIVTGGNWWFAILCAIIYEVAV
                     LWMADRTQPMVEEFYGLKGISLPTGSTAAFGFIGIPVGWLIAKIPGIKNIHVDPETIQ
                     KRFGIFGEPMMMGLILGIAIGILAGYDVGAVAQLGMSMGAVMFLMPRMVKILMEGLIP
                     ISESAREFMKSRFKGRELYIGLDAALSIGHPANISTGLILVPITLFLAVIIPGNKVLP
                     FGDLATIPFYVSFVVASRKGNILHSVLAGTVVIALALLMATDFGLVHTEMMKGVYEFP
                     KGATQVSTLDMGGNFFNWVILKFSQAWAAIF"
     gene            33815..34867
                     /locus_tag="U0342_000034"
     CDS             33815..34867
                     /locus_tag="U0342_000034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HEM2421416.1"
                     /translation="MRAAVLYENNVIKAEQIDEATCGKDQVRVEVKAVGICGSDIHKM
                     QTRWKYPLPAVMGHEFAGVVTEIGSEVTNVAIGDRVAGIPLEPCMECNYCKAGDFALC
                     DNYRMVGSHFHGGFAENVVMKADNVISIGDLDFEEGAMIEPLAVSMHGVLGIQPRLGD
                     TVIVFGIGTIGILVVQCLLLAGVKDIIAVDISDKKLADAREFGCKYTINPKNEDLKER
                     VFAYTNGLGADIALECAGSKITQEQCLLVTKKKGKVGFLGIAYADVLLHEEAFENIFR
                     RELTLKGFWNSYSAPFPGEEWRTSIEFVKQGRIKLKPLISHRYKLEETKEAFDMILSR
                     EHDYNKVMILPQKGDD"
     gene            34869..35900
                     /locus_tag="U0342_000035"
     CDS             34869..35900
                     /locus_tag="U0342_000035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding dehydrogenase"
                     /protein_id="HEM2421417.1"
                     /translation="MKAVVKTNPGYDQMELRDVEEPQVYGDKVKIKVAFTGICGSDIH
                     TFKGEYKNPTTPVTLGHEFSGVVVEVGPDVTSIKVGDRVTSETTFETCGECIYCKERD
                     YNLCSNRRGIGTQANGSFAEFVLSREESCHVLDERISLEAAALTEPLACCVHSALEKT
                     TIRPDDTVLVFGPGPIGLLLAQVVKAQGATVIMAGITKDSDRLRLAKELGMDRIVDTL
                     KEDLAEVVLGMTDGYGAERVFDCSGAVPAVNQGLPLTKKKGDFVQVGLFAEKKNAIDE
                     ESIIQREIAYIGSRSQKPSSWILALDLLANGKINTDKMITKVYGLDDWREAFEAVMAG
                     NEIKVLVKS"
     gene            36095..36535
                     /gene="rpiB"
                     /locus_tag="U0342_000036"
     CDS             36095..36535
                     /gene="rpiB"
                     /locus_tag="U0342_000036"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2421418.1"
                     /translation="MKLTIGCDHGGRRLKDAIVKHLREKDIEVVDIGTYTDESVDFPS
                     YAEEVANQVVSGQSELGILCCGTGIGMSIAANKVDGIRAAVVSDTFSARATREHNNSN
                     VLCLGERVIGEGLALLIVDTWLEASFAGDRHKRRLDKITELERK"
     gene            36544..37218
                     /locus_tag="U0342_000037"
     CDS             36544..37218
                     /locus_tag="U0342_000037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2421419.1"
                     /translation="MRKIAASIMCADQLHLGEELRRLESAGVELLHCDVMDGVYVNNL
                     ALGPEYLEIVRNNTEIPLDIHLATITPLKYIDMFGPVKPEYISFHVEVAEDVSEVIRK
                     IRSYNVKPSIAINPETPIEAIYPYLDDVEMVLMMTVNPGFAGQKFQTDVLQKLHDLKA
                     KLAGKVHAPLIEVDGNINKETVGLMRDCLPDIYVLGTSALFHDRDKTSYAERLVHIWS
                     DVEKHV"
     gene            37252..39267
                     /gene="tkt"
                     /locus_tag="U0342_000038"
     CDS             37252..39267
                     /gene="tkt"
                     /locus_tag="U0342_000038"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2421420.1"
                     /translation="MKKTLDRQAVDTIRSLSIDMIEKANSGHPGMPMGAAPMAYMLFA
                     KHLVFNPANPEWFNRDRFVLSAGHGSALLYSMLHLFGYDVKMEDLKQFRQLDSLTPGH
                     PEFGWTAGVDATSGPLGQGIGMAAGMALAESHLAAEYNQPNYPIVDHYTYAICGDGDL
                     MEGVASETASLAGHLGLGKLIVLYDSNDICLDGDLSATFSENAADRFRAYGWQVLRVE
                     DGNNLAAIQEKIVQAKLETSKPTLIEVKTVIGYGAPTKAGSSASHGAPLGEKEANGAK
                     EHYEWAEEPFTVPAEVRDYLRNYKARGEKLEGAWNTMLANYKKEFPELASQLDRVLAG
                     EVAADWNANLPTFEAGTNVATRSASGKMINAIAAELPELFGGSADLGCSNKTFIDASP
                     AYSIQDPAGKNIWFGVREFAMGAMLNGMALHSGLRVFGSTFFVFSDYVRPAMRMAALM
                     QLPVTYVFTHDSIAVGEDGPTHEPIEQLASLRAMPGLTVIRPADAKETRAAWEIAATN
                     TNGPIALVLSRQDLPVLENAQEEVDAGVDKGAYIVAPANSSKPDAIIIATGSEVSLAI
                     EAKAELAKKDIDVSVVSLSSWERFEKTTDAYKESILPKEVTARFAIEAGATFGWKEFI
                     GSEGDMLGIDHFGASAPAKDLFNAYGFTPENVADRVETVIAKAGVRV"
     gene            39264..39908
                     /locus_tag="U0342_000039"
     CDS             39264..39908
                     /locus_tag="U0342_000039"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2421421.1"
                     /translation="MTFVAPSLLAADYMNMANSIKEAEHAGADYLHIDVMDGHFVPNL
                     TFGIDMVEQIKKTATIPLDVHLMLSNPENYIEKFAAAGAHIISVHIEAAPHIHRVIQQ
                     IKAAGCKAGVVLNPGTPASVLDAVLADVDLVLQMTVNPGFGGQAFIDSTIKNMRYLDH
                     WRRENNGSYVIEVDGGVNAETAEKCKQAGVDVLVAGSYFFRADDKIACIKELKA"
     gene            complement(39964..41433)
                     /locus_tag="U0342_000040"
     CDS             complement(39964..41433)
                     /locus_tag="U0342_000040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2421422.1"
                     /translation="MLQRRFWGIFCFAIFLFLFPTIGSAETSGDYEYTINGNEATITD
                     YTGQSTDITIPTTLGPNNEYTVTAIGNGAFKSKRLTNVTIPNTVITIGDGAFTINSLE
                     QLVLPNSVQTIGRNSFSVNKLEKITYSTALKNIPSQAFLANNLKTVTTPATVESIDAS
                     AFENNFITNITIQNPNLQMAYQAFAAQTVLSTLIVPSNHILPIENYIQFQDASAHLTT
                     DNLFITDLANGITYNQAEKALNFSAEPLESTFSLFTGTNRFDSYYDISEYGPSGKPFI
                     YFKYTKPVLVSYKDASGNELATSTRLDGSIGENYVTTPKIIDGYTLKETPGNATGQFS
                     ETLQNVTYIYEKTAVQNGTVTVKYQDESGKTLAKDTVLTGEVINTYQTKSKDIAGYKL
                     QKVEGNESGTFSTTPATVTYIYEKIANSDNTNTNGEMTDNTTLSTNDTVISSEATKKV
                     DKNTSNILPTTGDSKDALFFALGSLLTLLSTSFFFFKRS"
     gene            41593..42072
                     /locus_tag="U0342_000041"
     CDS             41593..42072
                     /locus_tag="U0342_000041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2421423.1"
                     /translation="MTQLVFRNGTEQDTTLILRFITELAIHEGIEKDVVATESGLHKA
                     LFQEKSAEVIIAEYEGEPVGFALFFHNFSTLLGKKGLYLEDLYIIPEMRGKGFGTKFF
                     SYLSKLALSRDCGRFEWWCLNENKSGMDFYEKIGAEKMSEWTVHRLTKAEMKKISNL"
     gene            42088..43485
                     /locus_tag="U0342_000042"
     CDS             42088..43485
                     /locus_tag="U0342_000042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyguanosinetriphosphate triphosphohydrolase"
                     /protein_id="HEM2421424.1"
                     /translation="MKWDKLLNDKRRRESGVTRSKNTDVRSAFENDFQRIVMSASFRR
                     LQDKTQVFPLEKSDFVRTRLTHSMEVSTIAKSMGNMVTHTIQEENLDKDFTKDHADKI
                     PEILACAGLLHDMGNPPFGHFGEESIREWFRDNLATITYKNKNLAEILTPQMKEDFYY
                     FEGNAQVLRVVSKLHYLFDQYGLNLTFATLNAVIKYPVSSLKVNKKQIKSKKLGYFYA
                     DESLFNEITTATEALDNRHPLTYLLEVADDIAYLNADLEDGVKKGIVNITQILKGFEE
                     VEEHNKVTAACYNELKKKSERYEGQEESFIVQQWLASNVRGQLINRSLEVFYENYDAI
                     MAGTFNDSLIDASSAEQLVQILQSLSFTYIYQDKGIVESEIAGNEIISKLLETFIPAV
                     IYYDSETPERQTAKDKRLLTLISDNYLGCYRKNAEGESETMKLYLRLLLVTDFICGMT
                     DSYAKDLYQRLNGLS"
     gene            43678..44091
                     /gene="rpsL"
                     /locus_tag="U0342_000043"
     CDS             43678..44091
                     /gene="rpsL"
                     /locus_tag="U0342_000043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S12"
                     /protein_id="HEM2421425.1"
                     /translation="MPTINQLVRKPRQSKIKKSTSPALNKGLNSFKRELTDVNSPQKR
                     GVCTRVGTMTPKKPNSALRKYARVRLSNGIEVTAYIPGIGHNLQEHSVVLIRGGRVKD
                     LPGVRYHIVRGALDTAGVENRGQSRSKYGTKKPKK"
     gene            44122..44592
                     /gene="rpsG"
                     /locus_tag="U0342_000044"
     CDS             44122..44592
                     /gene="rpsG"
                     /locus_tag="U0342_000044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_013054923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S7"
                     /protein_id="HEM2421426.1"
                     /translation="MPRKGPVAKRDVLPDPIYNSKLVTRLINKMMVDGKRGKSQAILY
                     SAFDIIAQETGKDPMEVFEQAMKNIMPLLEVKARRVGGANYQVPIEVRADRRSTLGLR
                     WLVNYARLRGEKTMEVRVAREIMDAANNTGASVKKREDTHKMADANRAFAHYRW"
     gene            44658..46745
                     /gene="fusA"
                     /locus_tag="U0342_000045"
     CDS             44658..46745
                     /gene="fusA"
                     /locus_tag="U0342_000045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G"
                     /protein_id="HEM2421427.1"
                     /translation="MAREFSLEKTRNIGIMAHIDAGKTTTTERILFYTGRIHKIGETH
                     EGASQMDWMEQEQERGITITSAATTAQWKGYRVNIIDTPGHVDFTVEVERSLRVLDGA
                     VAVLDAQSGVEPQTETVWRQATTYGVPRVVFVNKMDKIGADFLYSVGTLHERLAANAH
                     PIQLPIGAEDTFEGIIDLIEMNALYYEDDLGNDPHIKEIPADLKDLADEYRGKLVEAV
                     AELDEELMMKYLEGEEITKEELKAGIRKGTLNVEFYPVVCGTAFKNKGVQPMLDAVLD
                     YLPAPTDVPAINGVLPDGEEAARHADDSEPFSSLAFKVMTDPYVGRLTFFRVYSGTLN
                     SGSYVQNSTKGKRERVGRILQMHANHREEISIVYAGDIAAAVGLKDTTTGDTLCDEKE
                     QIILESMEFPEPVIQVAIEPKSKADQDKMGQALAKLAEEDPTFRAETDQETGQTLISG
                     MGELHLDILVDRMRREFRVEANVGDPQVSYRETFRKSAQVEGKFVRQSGGRGQYGHVW
                     IEFGPNEEGKGFEFENAIVGGVVPREYIPAVQAGLEGALDNGVLAGYPLIDIKAKLYD
                     GSYHDVDSNEMAFKVAASMALRNAAKKCDPVILEPMMAVEVVIPEEYLGDIMGNITSR
                     RGRVDGMEARGNAQVVRAFVPLANMFGYATHLRSGTQGRGVYTMQFDHYEEVPKSIAE
                     EIIKANGGNNKED"
     gene            46854..48041
                     /gene="tuf"
                     /locus_tag="U0342_000046"
     CDS             46854..48041
                     /gene="tuf"
                     /locus_tag="U0342_000046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Tu"
                     /protein_id="HEM2421428.1"
                     /translation="MAKEKFDRSKPHVNIGTIGHVDHGKTTLTAAITTVLAKKGYADA
                     QAYDQIDGAPEERERGITISTAHVEYQTDSRHYAHVDCPGHADYVKNMITGAAQMDGA
                     ILVVSAADGPMPQTREHILLSRQVGVPYIVVFMNKCDMVDDEELLELVEMEIRDLLTE
                     YEFPGDDIPVIKGSALKALQGEADWEAKIDELMEAVDSYIPTPERDTDKPFMMPVEDV
                     FSITGRGTVATGRVERGQVKVGDEVEVIGIEEESKKVVVTGVEMFRKLLDYAEAGDNI
                     GALLRGVAREDIQRGQVLAKPGSITPHTNFKAETYVLTKEEGGRHTPFFNNYRPQFYF
                     RTTDVTGIVTLPEGTEMVMPGDNIELAVELIAPIAIEDGTKFSIREGGRTVGAGVVSN
                     ISK"
     gene            48196..50262
                     /locus_tag="U0342_000047"
     CDS             48196..50262
                     /locus_tag="U0342_000047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2421429.1"
                     /translation="MVQFDARNMALLESLVVANVYLAPEKLQEELGISKRTLQYDVEK
                     INKELDNIGLDGIQSVRGQGYYLLEDEKSTIKEILGNREASHKVFSASERRIRILFFL
                     LVTDARVIIDTINECNEVSRNTSLQDIKQLKLALKQFNLELAYDRKNGNMVLGDERSI
                     RQFFIHYCMNNEEIATADQLLDLMKINPMIKNQELFPKLDTIFEILAVTEKKIGIRYT
                     DEVLERIGIMIFFFKERMKRNCYLNEQEEHEVESFEIAQEIYQQLQQSENFKINHAEI
                     TYLGKLLLGASRLNDDAAAEGKLDLIVEKIIAEFERLACVNFEDHRNLKKDLLLHLQP
                     AYYRLKFQIEWINPLRTDIKQSYSDVYEITKKSLEPLEDLLGETIPEDEIAYVTILFG
                     GYLSRKNNTLVERKKLLIVCSKGVGTSRMIERQLSQLLGERVEILEPISIREFEKGLY
                     APDFIVSTLPIMEPKAPVFIVSPILTEAQKQQLMKAIAPHILQKDSDARMLSSVLDVV
                     DQYAKVEDREKLAAKLKSVLFQVQSDSQLEKSPTLEELLPKERITFKESVADWREAIL
                     VASKSLQQEGYISRNYQHAMIENIEKLGPYIVIAPGIALPHASVDDGAYRVGMSLLRL
                     NQPVSFSSKAKDQVKLIIVLASIDSYTHINALSQLTNLIMKHHLLEQIEQATSAAEIA
                     AMLTIQ"
     gene            50455..50889
                     /locus_tag="U0342_000048"
     CDS             50455..50889
                     /locus_tag="U0342_000048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2421430.1"
                     /translation="MSFLDKELVNLHGSAKNADEAIVQAGELLVNAGYVSEQYVEKMV
                     ESYHENGAYFVIAPQIAIPHARPTDGVENSAVSLVVLKEGVNFGHAANDPVRLVFGLA
                     ATSSEAHLKVIQKIVSLLSNNDNIEKLIHSEDYQAIGELVEG"
     gene            50892..51164
                     /locus_tag="U0342_000049"
     CDS             50892..51164
                     /locus_tag="U0342_000049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2421431.1"
                     /translation="MKILAVCGLGQGTSLILRMNVETVLRDMGVDADVEHIDVSAARS
                     MNVDIIVTSQELAETLGTDTSAKVVIVNNYFDNAEIKTALSEAINS"
     gene            51191..52489
                     /locus_tag="U0342_000050"
     CDS             51191..52489
                     /locus_tag="U0342_000050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS ascorbate transporter subunit IIC"
                     /protein_id="HEM2421432.1"
                     /translation="MEIITWIANNFFGTPAILLGFIVLLGLLLQKKNLSQVISGTFKA
                     IIGFLIINAGAAVITGSLGIFEPMWKEVFGLETPPLAGFLGQEAFNAKFGSAVTLAMT
                     LGFLVNVLLARFTPFKYIYLTGHMMFWTTTIFAGITVQAVGGDIPFWGLVLFLAVIMG
                     LYWTLQPAITQPFLRKITGNDNVALGHTSSSVAILSALLGKVFGNKKNDAEHINLPKK
                     LEFLRDSNVITALTMGILFVVGAVILMVKKTPGAEKLIAEAGNQSFIVYSIVQSFTFA
                     AGIAIVLVGVRMFIGEIVPAFNGIATKLVPGAKPALDAPIVYPYAPNSVIIGFVGAFI
                     GAIIWLVVLGNTVGYVFVPTMIVLFFHGAVAGVFGNSTGGVRGALIGGFLTATVVAWG
                     QYIMVTFFINTTVPDTAMWAADSDMFILGPIVSMLAKLFF"
     gene            52559..53551
                     /locus_tag="U0342_000051"
     CDS             52559..53551
                     /locus_tag="U0342_000051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotriesterase"
                     /protein_id="HEM2421433.1"
                     /translation="MSFIRTFYGDIAPEQLGFTYSHEHIVCVPAYWQERDADDLLLDD
                     KEKSQLDVQDFADLGGKTIVDATAVDYGRRVLDVAQISKETGIQIVGTAGFNKSFLWD
                     GKIKPELKPIIGDFETYYEWIENTTTDKLTEFVVNEVENGLEGTPYKAGQVKFGTGYN
                     MITPLEEKTIRAVARAHHETKAPIHSHTEAGTMALEQIEILKQENIPLEYLSIGHMDR
                     NLDPYYHKQVAKTGAFMSFDGIAKIKYAPESARIAAILYLVSEGFEDQILVSGDTARK
                     TYYKHYGHGPGLEYIAKKWVPRFIDEANEKGFDGEKLVKKFFVDNPARCFTFKK"
     gene            53564..54313
                     /locus_tag="U0342_000052"
     CDS             53564..54313
                     /locus_tag="U0342_000052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="creatininase family protein"
                     /protein_id="HEM2421434.1"
                     /translation="MLYADENSFDIGAKITKTKPVLLPIGAVEAHGPHLPLGTDNILA
                     SEYSAKIAAETSGFVLPVLPYGQVWSLQDFPGSLTLSNETVTKVVVEIGESLYKQGFR
                     LFVPVSGHLGNMAALKDAARELYAKYPDMVILHIFYPNIQKLAMDVREGNANHHTYIH
                     ACEIETSLMLYLSPENADMSRAIDDPPILPIDADFTPTPWQNFTKTAVLGEATLATAE
                     KGEYLIEKTLKTCVELIKLEQEKIRKSTEME"
     gene            54273..54992
                     /locus_tag="U0342_000053"
     CDS             54273..54992
                     /locus_tag="U0342_000053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxo-acid lyase"
                     /protein_id="HEM2421435.1"
                     /translation="MNKKKFENLPKWNNFALFNFLAKDKENSLEVMEAARGFAVPGIV
                     ATNYETAEEAANVVKELQTTAPVISVGLGGGGDWQNWRDVLHIARLAPNSHINQPIET
                     AGLTNDLLPETYTNALVRPTGKIGIVKLSSGDEITAEEAVDYCLSANIPSIKFMSIEG
                     TKYLDELVYLTKIAADKGIYGIEPAGGIGADNILEITTAIKSTGIPFYMPHIFGKTID
                     KATGRTKPEEIEKIFAALEGN"
     gene            54993..55736
                     /locus_tag="U0342_000054"
     CDS             54993..55736
                     /locus_tag="U0342_000054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar isomerase domain-containing protein"
                     /protein_id="HEM2421436.1"
                     /translation="MINNYIDITVRLLENILDNEADYVKEAGAKVAESIENDGVIHLF
                     GCGHSHILTEEVFYRAGGLAAIHPILHEPLMLHEGAAASSVLERKNDYAKTFMAEEDI
                     RPGDIMIVLSTSGRNPVPIDVAEIAREKGAFVIVITSLQYSASQKSRHTSGKRLSDTG
                     DIVIDNGAVKGDAVLKSANFDIAFAPTSTVTGAVILQSIFAEAIETMVNDNFTPPVFI
                     SGNVENADAHNQALVDKYNERIPLLGMNL"
     gene            55842..56828
                     /locus_tag="U0342_000055"
     CDS             55842..56828
                     /locus_tag="U0342_000055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4003 domain-containing protein"
                     /protein_id="HEM2421437.1"
                     /translation="MDSAYVFDSEQATKLLMKNYELVKTSGVSFIDKRIRFLIARLFA
                     GNNEVVNPEEFSEINKEIKRQLGMFTALNGNVRASLVGLLMANDNASRESVQQVIANY
                     NTLIQAGFQRTEYTYFAAYLLLESENPKKTAQKAKTIHQLFKKDHPFLTKSEDVTTAV
                     FLANLPEENTTKLAEITEYYFQEFAAKGFRKNDSLQFLATTGTLLYGEKDSKFIRRVD
                     NIVEELRQKGIKVKPLHYSSIGILAFVMDARKIDSGLVNLIDELQQQPGLRFGREFVT
                     ALAISLYTEKQSGQMSKEQLEGLMVNVHILIAMEQAAAVSAAAAASAAAASS"
     gene            complement(56875..58206)
                     /locus_tag="U0342_000056"
     CDS             complement(56875..58206)
                     /locus_tag="U0342_000056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic nucleotide phosphodiesterase"
                     /protein_id="HEM2421438.1"
                     /translation="MIRFFKIVTPILLSISLVACSSASGKTENITAPIEKDRNLSMVV
                     TTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVEAKKTDVLIISGDL
                     TNNGEKTSHEELAKKLTQVEKTGTQVFVVPGNHDINNPWARKFEKDKQLPTDTISPTD
                     FSKIYGDFGYKDAISSDEFSLSYLAAPSSKVWLLMLDTAIYKTNMQQGTPTTEGGLTA
                     GTLDWIKESSALAKKNGAKLVPVLHHNLTDHNDVIQKGYTINYNQQVIDALTEGSMDF
                     SLSGHIHTQNIRSAKSTDGKEITDIVTNALSVFPHKYGNITYSAKNKNFTYQSQKLDM
                     EAWAKAQGSTDENLLNFNQFDYETFYNSGYDKAMMDLMTDESYDKYNQADKEKMADTM
                     GLNNMYFFAGTAPPKSDGMALWDSAPNSFLKDYVLSSSNPPKKSNDYYVSP"
     gene            complement(58296..59276)
                     /locus_tag="U0342_000057"
     CDS             complement(58296..59276)
                     /locus_tag="U0342_000057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM2421439.1"
                     /translation="MQLHAMWDEYPALSKDLQEVLQTIEKNIQIRDKHVEQNVKDLIH
                     AGGKLLRPAFALLSAQAGPDYDKERAVSIAAALEVLHMATLIHDDVVDDSPLRRGIPT
                     IHSKYGRNYAVYTGDYLFCICFKILSAHASSVENIEFNSKNIEKILMGELDQMRTSYK
                     MNVTVREYLTRISGKTAQLFALSCYSGATGSKATRMTVAKCYNIGHYLGMAFQIIDDV
                     LDYTSTDEGLGKPVLNDMKQGIYSLPLIYAMKGHLAEFEPLLSQKLDMTDEASEQVLA
                     LISKYKGVEQAFKLANKYTNKALREIKKLPAGAYRDDMYRLTKNILDRDI"
     gene            complement(59298..59840)
                     /gene="eetB"
                     /locus_tag="U0342_000058"
     CDS             complement(59298..59840)
                     /gene="eetB"
                     /locus_tag="U0342_000058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin-based extracellular electron transfer
                     system protein EetB"
                     /protein_id="HEM2421440.1"
                     /translation="MTKNRRLVYIALLAAQAVVISLLERAIPFPFAFAPGAKLGLANI
                     ITCISLYTLSAKDTFMIICIRLVLSTLLGGTISTFMYSAAGAILSFLGMWLVQQLGPK
                     RVSIIGVSVTGGILHNVGQLVIASWIAGTWSVMLYLPVLSFIGILSGIAVGIAANYLL
                     KNVQTLRMFADAKQSQAAQK"
     gene            complement(59873..60307)
                     /gene="eetA"
                     /locus_tag="U0342_000059"
     CDS             complement(59873..60307)
                     /gene="eetA"
                     /locus_tag="U0342_000059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin-based extracellular electron transfer
                     system protein EetA"
                     /protein_id="HEM2421441.1"
                     /translation="MKKYLSMVKRWDIIIILSLCILSFLPIAIFSYVKANEPAPANGK
                     KELVAVISVDSKEYKTVTLTGHKGTESFDVKQPDGHTNTIEVSGEEIRISKANCNDQV
                     CVRTGAIDKQGDTVVCLPHKLVIEVKASDGSSGDSDDPIISS"
     gene            complement(60483..>62254)
                     /locus_tag="U0342_000060"
     CDS             complement(60483..>62254)
                     /locus_tag="U0342_000060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM2421442.1"
                     /translation="HSYHTMMTELHEVAGGRVEPTAIQYDLRRLFNRTKVNLVTDNVT
                     HVDHDKKVVTTEHGSYPFDYLVLGMGGEPNDFGTPGVGENGFTLWSWEDSVKLRNHIE
                     ETVTKASREQDVEKRKAMLTFVVCGSGFTGIEMVGELLEWKDRLAKDNKIDASEIKLV
                     VVEAAPTILNMLERRDADKAERYMVKKGIEIMKNAAIVEVKPESIVLKSGEELPTSTL
                     IWTAGVRANSDTKDYGMESARAGRLKVNQYMEAEGLKDVYVVGDLAYFEDEEGKPTPQ
                     IVEGAEQTALTAAKSIIVEMSGTGEKEPFQGKYHGVMVSIGAKYGVAHLGGMHLSGWF
                     AILMKHMVNLYYFFGIRSGYYMWQYIMHEFFHIKDHRNIFRGWTSRYGNVLWVLPLRV
                     YLGWFWIDEALSKIYGETTWDKVSITNLKPLFNGIGSDSWLTATTSKMPFEWLQTAAT
                     SGASQAAGDAAGAAATNVTTPILSHMPGWFQWIMELLMPNLDVALVMQKVVPFVELAI
                     GLAMVVGLFTWLVSIGSAGFLVMFTLSAMLGWDKFWALPASIALLNGAGRTFGLDYWA
                     VPWFQKHLGHWWYGKPRSVYRDK"
BASE COUNT        18892 a        11549 c        13653 g        18160 t
ORIGIN      
        1 tttcagttat ttaatttcaa ttgttttaag atttgctgcg atgacttctg gtttttcatc
       61 catttgaact tgagcagcag tagcgtaagc accttctaaa attggtgcat taaagagaat
      121 aatttctttt tcgctgattt cttctactgt ttctatattc attttggcgc ttccgaggtc
      181 gtagaaagtg tagactttat tagcttcgtt actttcaatc gcttcattta cggcatcaaa
      241 acttgtgcca atgcgaccgt cttctgttcc accggcatgc gtgatagaga cgtctggggc
      301 aatttcttta ataatatcat ggacgccttt tgccacatct ttggaatgag aaatgataac
      361 aacgccataa ggtttagcca tgggttagct cacctccgtt tgaagcattg cgtggaatag
      421 gagggcggaa gagtaggcac cgggatcaag atgcccgata gaccgttcac ctaggtagct
      481 ggcacgtcct ttagttgctt ttaaatcttt tgttttttgt aaagctgctt caacaacatc
      541 atctgttaaa tcttcctgat gaagggcatt tacaactggt tcccaaacat caatcattgt
      601 tttctcgcca gcatgggatt taccgcgttt ttcaatccct tcaagtcctg cttcaagcac
      661 tttggttaag ccttccgcgt caattgtttc tgaatctacc gctttactca tgtttaaaaa
      721 ggctgttcca taaagtggtc cagatgcgcc gccgaccttg ctgaccatcg tcatcccagc
      781 ggttttaaat acatctttta aatcagcggg ttctttttct gtgaaagctt ttttgagttc
      841 gccgagtccg cgagccatat tgataccgtg gtctccatca ccaatcgctt ggtcgagatc
      901 acttaataat tgtttgtttt cttgtacgcg ttcgccgaag tcatttaacc agcgtaacgc
      961 ccaatcttta tcataagtca tgattcattc ctccaaattt tattaccatg caattgtgtc
     1021 cactgggagt ttcaacatat caacccattt ttcgtcctct aatttcaaaa tggttaagga
     1081 taaaccagcc atttcaagag aagtcatata atctccaacg agtgtttttt caacttgaac
     1141 gccggcattt tttagaagtt catggacatc atttgcgaaa acatattgtt ccataagtgg
     1201 tgttgcgccc atgccgttca cgagcacaac cactttatct ccaggtagga atttgctttc
     1261 attgctaatc cgttcgtaca gttgcttcgc taaacttgca gatggcatga ttttttcacg
     1321 cgtaaagcca ggttcaccgt ggataccaat gccaagttcg atttcgtcgt caccaagctc
     1381 aaagccagga tgtccaacct caggaacagt acacggagta agtgcgacac caagcgtttt
     1441 aaccgaagca attacttttt caccaagggc tttcagttca tcaagagatg cgcctgcttc
     1501 tgcggctgcc ccgataattt tatgcacgag aacagtcccg gctacaccgc ggcgtcccgt
     1561 tgtaaaagta ctatcctcaa cagcaatatc atcatctact acaatttgtt ctactttaat
     1621 atcatcggca tctgctaaat ctgccgccat ttcaaaattc attacgtcac cagtataatt
     1681 ttttacgatt aaaagtacac cagcgccttg atctgcggct tttatacctt cataaatttg
     1741 gtcgggagtt ggggaagtga aaacatcgcc acatacagcc gcagagagca ttccgcgacc
     1801 aacataacca gcatgagccg gctcgtgacc agaacctcca ccgcttacaa gtccgacttt
     1861 tcctggacgt ttatcatttc ttgcaatgac gcgagttcct tcgacacggt gaacaacatc
     1921 agcatgcgat ttcactaaac cttccaccat ctgttctact acttgatcag taccgttaag
     1981 aatcttcttc atctgacaaa aaacctcctt taaaattgtc ctcttacctc aatttccctt
     2041 tactagaaag tcaaaacgta gttgctgtct ttattataca acttataaaa tgaaaacgct
     2101 ttaaaactgc aagaatgtgt cataaaccca gcaaaatggt acaatgaagg agagaatttg
     2161 aaaaggggaa ttgttatgag gaatcaatct aaaatgcctt tagtggaacg gttagatgct
     2221 catgctaagt cttgcccaat atcactccat gtgccaggac acaaaagcgg agccatttat
     2281 ccagatgcat ggcaaaaatt tttgaaatgg gacgtaacag aaattactgg aatggatgat
     2341 ttgcatcacc cagaagatgt gattttggaa gcagaggagt tacttgcgga atgttatgga
     2401 agcaaaaaaa gctacttttt agtcaatggg acaagcggag gaagcttggc agttattatg
     2461 gcgacgttga agcacgggga gaaagtttta gtgccaagag atgcgcataa atcaatcttg
     2521 catggaatcg aactggcagg cggagaaccg attttcttaa ccccagcgac aaacgaagaa
     2581 gttggcgtcg cgagtggcgt gacaaccgaa cttctcgaag aaacattaca taatcaccca
     2641 gatataaaac tatgtatttt cacttatccg agctattatg gaacgacttt taacttgcat
     2701 aaatgtattc aaattgcgca tgattttggt gcggttgtgt ttgttgatga agcgcacgga
     2761 gcacattttt taacaagttc tgaatttccg aaaagtgcag tggagcttgg tgcggatgtg
     2821 gttgttcagt cggcgcataa gacgttgccg gcgctaacga tgggttccta tttacatgtg
     2881 gtgaatgatt taccgatttt tgaaaaacta ccttattacc tgcaagtatt ccaaacgagc
     2941 agcccatctt atttaattat ggcgtcactt gatgcggcga ggaaatatgc ggcaacttac
     3001 acagcggcgg acgtcgaagc tttttggaaa atgcgtgcca gatggattaa atggctgacg
     3061 aagaataaat ttgacgttat tttgccagat gatccgctta aaatcatcgt gcgcaaaaca
     3121 ggctacacgg gctacgaact gcaagcaatt tttgaagaaa gctcttattt cccagagctt
     3181 gccgatgagt cacaggtatt actgatttta ccattaatta aaaaagggat tgatttcacg
     3241 cctattagcc ggattcattc tccggtgaaa aaagaaatcg cgaaagaacc atatgaaatg
     3301 tcagcgcctt ttgcgtcagg tcttgcgcta acttatgaag aaatgcacgc acgcgcgacc
     3361 gaattcgtat tactagatga agctacgaca cgcgtttcgg ctgaaacaat ctcgctctat
     3421 ccgccgggaa ttccagcaat catccgcgga gaaagcatca cagaaaagca tattcgcgaa
     3481 ctaaaaaaca ttcgcacacg ccactaccaa ggcggcgaaa aactagccga gaattacatc
     3541 cgtgtattcc gctaatttat gctataatca aacagaaagc gacgcgaaag ggaaaggaaa
     3601 ttactaaatg aaagcaattt ttattacact cgaaggccca gatggctctg gtaaaacaac
     3661 agtaggaaca ctacttaatc aaaaaatgac ggaagctggc attgatttta ttaaaacgcg
     3721 cgaaccaggt ggcagcccga tttcagaaaa agtaagaaat atcgtgctcg gaattggcaa
     3781 tgaagaaatg gacccaaaaa cagaagtact acttattgcg ggagcgcgcc gtcaacatgt
     3841 cgttgaaaca atccgtccag ctctagcggc agggaaaaca gtactgtgtg accgtttcat
     3901 ggatagctct cttgcgtatc aaggtgccgg acgtgacatg aatatggaac aagttttaca
     3961 agtgaattta tatgcgattg aggatacatt gcctgaccgg acgtactatc tcgatgtgcc
     4021 tgccgaagtc ggtttagcta gaatcgccgc taataagggc cgtgaagtca atcgcttgga
     4081 taaagaagat attacctacc acgaaaaagt ccaagctggt tacgaaaaag tcatcaacat
     4141 gttcccggaa cgttttatgc gagtggacgc tacaaagaca ccagaagaaa tcacagaaac
     4201 tattttagcc gacattttac gacaattagc ctaacatcta gtgggacttc aacaccttgc
     4261 cacaagtgca tatcgctctt taaaatggtg tttgtttgct ataatagaaa aaaagataga
     4321 tttttaggaa gggttgattt ctttgaaact gatatttgca atcgtccaag accaagatag
     4381 caaccgtttg tctgacgcac ttacaaaagg caatttcggt gcgaccaagt tagctacaac
     4441 tggtggattt ttaaaagcag gcaacaccac atttatcatc ggtacagaag atgaacgtgt
     4501 agaagatgcc ctagcgataa tcaaggaaaa ctgtaaagca cgcgaacaaa tgatgacacc
     4561 atccgcttcc ttaggtgtga cggtagatac gtatgtgcct tacccaatcg aagtacaagt
     4621 tggcggcgca accgtatttg taatgccggt ggaaagtttc catcattttt aaaacagaga
     4681 aaaagcaggt atgcgataag ggctacctgc tttttttatc tataatggga attagatgct
     4741 ttaaactatc aatgcgagat aaatgaatta taaccaatag actctgctat tcagattgtc
     4801 attagaatct gtttaattta ataaaaaaac cgcagacaaa gcaatttctc gctttatccg
     4861 cagtttctga cctatctcgc tcatgaggta ggctttttac attcacttaa tcgtcaattt
     4921 ctgtccaaca tgaatcatgt tgcttgttaa cttgttccaa gctttaatat tatctacagt
     4981 tgttttatat tgtctagaaa tggcccataa agagtcgcct tttttgacgg tgtatgtttt
     5041 tactgtggaa ttacttggtt tatttgtgct tggttttgcg gtatttgtgt ttgtagtagt
     5101 tccggcgcta actttaagtt tttgtcctgg gtaaatgaaa tcggatttta agttgttcca
     5161 ggattttagg ttagcaatag ttactttgtg gttgttagcg attctccaaa gtgagtcacc
     5221 ttttgctacc gtataaactt tagcgttcgt gttcgtattt gtgcttggtt tggatgtatt
     5281 cgtgtttgtg ctcggtttag aagtatttgt gttagaagta gaaccggcac ttactttaag
     5341 tttttgccct ggataaatga aatcggattt cagattgttc caggatttta ggttagcaat
     5401 agttacttta tggttgttag cgattctcca aagcgagtca ccttttacaa ctgtgtatac
     5461 tttagcgttt gtgctagtgc ctgtacttgg tttggatgta cttgttcctg tgctcggttt
     5521 cgatgtattc gtatccgatg tagtggaacc agcacttact ttaagttttt gccctgggta
     5581 aatgaaatca gatttaagat tattccaagc ttttaggttc gcgacggtta ctttatggtt
     5641 attagcgatt ctccaaagcg agtccccttt tacaactgtg taaatttttg cattggaggt
     5701 gtttccggtg ttgctagaat ttccagtgtt accagtactt ccggagtttc cgccagttgt
     5761 tttgccactg tcatattggg ttaaattata tcggctaatc aagtcattta atttcgttgc
     5821 ataggctgtg tctgttgcgt acgttccagt taaggctttc gttgcgtctt tgtaggaagt
     5881 agtgttgctt ttccaaactt tggagtagta atttgggttc cagcttgggc cttttcgaat
     5941 gacttgtgcg taatcttcta aggattggtg ataagacgga tattttctaa atttagctgt
     6001 gattgtgtag tagtttcctt taccatcatc ttctagtgtt tgttttgtat aagattggcc
     6061 gttgtaagct cctttgattc caaaaaggtt atagtttgga gcagagccta attcgctcgt
     6121 tccataggcg ctttctaaaa tggcttgggc gatcatgaca gatgcgtaca ggtcattttc
     6181 tgctgcaatt tgggaagaag aggcttggat tgtttggata aagctttgaa cagttgctcc
     6241 cgaacggagt gctgattttt gtaataggtt gtatgtagct ggtgtagaag agcttgttgc
     6301 attgtcagga ttgctaactg ttgcgggttc agctggagct ttttctactt gcttcgctgc
     6361 agcttgattt tcttctgctg tctttgtttg ttcttttgtt tcagtttgct tagcttcaac
     6421 ggttggttct gttgtgtttt caggagtggc cgttgctggt gtttctttag ttgtgttagc
     6481 ttcagcgctt ttagatgctt cgtcagcagg cgctgtttcg tctgcgctaa cgattacttc
     6541 gatgccggga acagtgatag aggttgcgat ggcagtaacc ccagcaatcg ttgcaccagt
     6601 tttgaatttt ttactttttt tgtttttctt ttcttcttgt aaggcttcaa gaatacgttc
     6661 ttttctcgtc ttttgcatgg taagtcactt ccgattcttt aaatattcta catccattat
     6721 tacatacttc acattactta tgattgatat cgacaaattg taattaaatt gtcaaaaagg
     6781 ctcgtctttg ttatactgaa tataagcaag tgcttactta gttgaacggg ggtaaaataa
     6841 tgattacaaa cgaatccatc atggatgcaa cgctttgtat gatggcgaaa cacggcatca
     6901 aaggctccac aacaagacaa ttagcagaag ccgctggaat aaatgaagct acgattttta
     6961 aaaaatttaa gagtaaagac aatcttattc atatgacgct ggaagtccaa tttgaaagta
     7021 tgaaggcgga aatcaatcaa ttttttgata aagattttga gagtgccaag gtgtttctac
     7081 gtcaagcgag tcaatttatt tcggatattt atgaaaaata tcgggacttt atggtgattt
     7141 ctgttcgaga aatgggcagc aaagatatgg aatttattga tccatcgatt gtggaatatt
     7201 tgtatgaacg ggttaatcaa aaagtaaaag aaatggttcc gagtaagaac tctgcgcaag
     7261 aagcagatgc gatttctttg attttaaata gtgttatttt gcttattatg gtggaaaaag
     7321 tacgcgatga tatttataag cgcccgccaa cgattacaac aaccgcagat tcattagcag
     7381 atgttttgtt aaaattattg aaataaatca cgaaaagtta aataaaagtt aagtatttta
     7441 cattttgtct tgcgggctta gattttctat gttaaactcg tagacgatta gagcgataat
     7501 aaatatgtag ttttgcctgt taggtgaggc tcctatgcaa acacaggcca ctgcccaaaa
     7561 atgtccaaag acgccaatgg gtagaacagg gattgtcgga ttaaggcttt ccataatgtg
     7621 gctaagagta ttctttacgt tgcatagtgc caaaacttta gcgaggggag tctgttttag
     7681 tatgcgtata aactcagaag tccttgccaa ggttttggta aggacttttt tcatgtttat
     7741 tatgaaaata attatctggg aattaaaatc tttttttcag ataattaagc ttagataaaa
     7801 ttcgaaagga gatgaaggca atggaccacc atcagggaga ggaagtagaa gaaccggact
     7861 cgtattatag taatcaagct gcaagagtga ctaaccttca tctctggcgc acataaacgt
     7921 tattctcagc ttgcctagaa agaattggag gcaaggaaaa tgaaaaaact acatgtaaaa
     7981 aagcaaggta acaatttgct caaagagtca caaataggca aagaaaaagt tttggaaaag
     8041 ttaggtgtta tggaaacggg gctcacaaac gtagaagtta cagaaagatt agcggaattt
     8101 ggtcccaatc aaactgtgga agaaaagaaa gtatcaaatt tgcggctctt tattcgggcg
     8161 tttaatgatc cgtttatcta tattttagcg atgttaatgg ttgtttcgta tttgacggac
     8221 gacatggaag cgactgtgat tatggcacta atgatacttg cgagcgggat acttggattt
     8281 attcaaacaa gtagagcaga acgggcgagt tacgcattaa aaaatatggt gaaaaataga
     8341 gtcaatgtta ttcgaaatgg ctccatggat ttgataatgc aagacgcaat cgtacctgga
     8401 gatttaattg aaatttcggc gggagatatt atcccagcag atgcgcgagt tatttcggct
     8461 acggatttat taattaatca atcggcgctc actggagaat cgattcctgc tgaaaaattt
     8521 gtggaagaca aaagtgccaa tccagaaatt tttgaacggg aaaacctatt atttatggga
     8581 acagatgtgt taagtgggca tggtcgggca gttgttttgc ggactggaag ctcgacgttc
     8641 tttggttcgt tgtccatcgc agctactgaa cggcgcggcg atactagttt tgataaaggt
     8701 gttaaatcaa tttcgaaatt actattttat tttatgatgg tgatggtacc gattgtattt
     8761 atgattaatg ggcttatgaa gggcaattgg ttagaagcat ttctatatgc agtagcgatt
     8821 gctgttggcc ttacacccga gatgctacct atgattgtca gcacgaactt ggcaaaaggt
     8881 gcaatcaata tgtcgaagaa aaaagtaatc atgaaagaac tgagcgccat tcaaaatatt
     8941 ggtgcaatgg acattttgtg tacggataaa actggaacac tcacagaaga taaactagaa
     9001 cttataaaat acattgatag tgctggcgaa acctcagaac gcgtcttaaa aatggcttat
     9061 ttaaacagtt acttccaaac tggttggaaa aatgttttag atcatgcagt tattgccaaa
     9121 ttggatgaga gtactgcagc agcttggaaa aaagttggcg agattccatt caattttgat
     9181 cgtcgccgtt tgagcgtagt ggtcgaaaat aaggcagaaa caaggatgat tacaaaaggc
     9241 gcggtggaag aaatgctcac tgtatgcact cataaggaat ttggcggtgc tgtttcgaca
     9301 ctatccgaat cggaaaagag cgaacttcaa gacatgtgtg ccgaaatgaa tcgctcagga
     9361 attcgtgtga ttgctgtggc ttataaaact ggaagagtcg gagaagcatt tactaagacc
     9421 gacgaagaac aaatgattat tgcgggattc cttggtttcc gcgatccagt aaaagcatcg
     9481 acgaaagaag caatcgctca tctttttaaa aatcaaatta acgtaaaagt tttgacgggt
     9541 gataacgaaa ttgttacgaa acgaatttgt caggaagttg gcattccagc gaacggattt
     9601 ttactaggtg cggatataga agagctttcc gatgaagaac ttacgcgcga actgcgaaaa
     9661 tatcacattt ttgctaaatt aaccccaatg caaaaatcgc gaatcattgg tttgcttaaa
     9721 aaagcggggc atacggttgg atttcttggt gacggaatta atgatgctcc ggctcttagg
     9781 aaagcggatg ttggcatttc ggtagataca gcggccgata ttacaaaaga tgccagctca
     9841 gtcatcttac ttgagaaaag cttaacggtt ttaaatgatg cggtgatgga aggtcggaat
     9901 gtattcggta atattctaaa ataccttaaa atgacggcca gctctaactt tggtaatgtg
     9961 tttagtgttt tggttgcgag tgcatttatt ccatttttac caatgctatc gttacacctt
    10021 ttactgcaaa atttattgta tgatttctcc caattaacac ttccttggga caaaatggat
    10081 cgctcatttt tgaagaagcc gcatcaatgg gaacaaaaag gaatgttgcg ctttattctg
    10141 tgcattggcc cggtaagttc gatctttgat attgcgacat ttctaattat gtggtttgta
    10201 tttagtgcga atacggtggc ggagcaagca ttattccaca gtggctggtt cgtggttggc
    10261 ttacttacgc aaacattagt cgtacacatg attcgtacag agaaaatacc gttcattcaa
    10321 agtcgggcag ctgcacctgt catgattgca acgcttagtg taatggcgct tgggattatt
    10381 attccattta caggattcgg tcacagcatt gggtttgtca gcttgcctgg tagttatttc
    10441 ccttggttga tattgatttt ggttggctac atggctacga tgcaactggt gaaaactatt
    10501 tatattcgga aattccggga gtggatttaa atgcgggcag gacgcgtgct gtttgtaacg
    10561 tatatacttc tggcgatatg gagtttgcta cttgtttata gtacgagtta tggtgttgct
    10621 gttatgcgat acaaagtgga gccgagttat ttctttcata ggcaattact tttttatggg
    10681 cttggttttt taggactact cgtttgctcg cgcattaatg tgcaactatt ttacctgaga
    10741 cgaacgcttc ggattttggc tggaagtttg cttgggttac tgctgttagt gcttctaaca
    10801 ggaagtgcgg cgaacaatgc gcaaagatgg ctgtctattg cgggtgtgac gttccaacct
    10861 actgagatgg ttaaattgct gctgatacta gtaatcgcaa cagttttttt gaaaaaaggt
    10921 tgtggtgttc gcgtgcaata ttggttgctt ggatttttgt ttttaacagt ggggcttgtc
    10981 ttcttgcagc cggatcttgg aactgcactg attttaggtg ttattggggt cgctttgttt
    11041 ttaacaagcg gagtcggcct cacacgcctt gtgcgagtgg ctatttggtc tttcggtctc
    11101 ttattacttg tagcaatgct gctttatttc tttcacccag acttttttag ttcagccaaa
    11161 ttgggtagat ttgcttttct ggatccgttt aacctagata atttagatgc ctcttatcaa
    11221 ctcagaaatg gctattacgc gattgggagc ggtgggatat ttggaaatgg cttgggaggc
    11281 agtatccaga agttaggtta tttgccggag ccgcatacgg attttattat gacggtaatt
    11341 gcagaggaac ttggtgtttt tggtgttatt tggacgatat ttttgttgat gatgctaagt
    11401 tttacagcgc tctatattgc tattagtagt cattttattt ttgattcgat ggtttgtata
    11461 ggtgtttctt cttgggtgtc ggtgcagacg tttttgaatc ttggtggagt gagtggaatt
    11521 attccgctta ctggtgtgcc actgccattt attagctatg gtggcagttc ggttgtcatg
    11581 ctttcgtgtg cagtaggatt tgtactggcg gcggcgagac ggaacgtact agctaaaacg
    11641 agagaggtcg tgtatttatg aaacgagatg tactttataa ccggattatt ttatcggtgt
    11701 tcttattgtc tttagttagt tgtgtggcaa tctattatgc gcagcagaca aatcagtaca
    11761 atacgaattt tttaggaatg caattggtgt ttttagcaat tgggacgctt acgtgttttg
    11821 gtgtttctag gcttccggtg gagtttttgc gacatcatgc gatttggttg tatgtgatta
    11881 tggtcattac gctcctaggt atactcattc ctaatccttt agtacaaaat ataaatggag
    11941 cgacacgttg gtatcgtttt gcagggctat cttttcaacc ttctgaagta gtaaaatcca
    12001 tatttatctt tgtattggcg cattttgcag tgaaatatca agcacaaaaa tggaaacaat
    12061 tagggattct gacggtgctt acggggatag tattactatt aattatgaaa caaccagacc
    12121 ttggtacgac gattgtttac ggggttacgg cgctagcgat tattttactg gcaattaaat
    12181 caaccaaact gatggtcgga attattacgt taatcttaac agctgcaaca gttggtatgt
    12241 atgttgtcgt gtatcacatt agcttattag agaaaattgg gtttcacgcg taccagtttt
    12301 cacggattca gacgtggctt gatccaacaa ctgacccaga cgccgtgtac caacttaact
    12361 tgtcgataaa ggcggttggt tcggggatga tgactggtag ttcggggaca aatgcgtata
    12421 tccctgaaag ccatactgat atgattttta gtacgattgg tcatcagttt gggtttgttg
    12481 gtgtaagttt gttgttaatt ttatttatgc tacttatcca tcaattaatt atggcagcgc
    12541 tattgatgaa gaataccttt tcttcgcttg ttttagcggg ctttgcagtg agttttgcct
    12601 ttaatatttt tgaaaatatt ggcatgactg ttgggcttat gccgctgaca gggattccgc
    12661 ttcctttcat tagttatggt gggagtgctg tgctaggtaa ttttattgca gtgggtgtag
    12721 tgctagcgat tatccggtca gatgccgatt taatagaaga aaaaaaccag ctgtcatgac
    12781 gacaactggt ttttttagtg ttatttattc ttataaaggt ctacaatttc tttcgctaaa
    12841 tctttgaaag tgattgcatt cattaagtgg tcttgtgcgt gaacgagtag aagggaaact
    12901 tctgtttttt cgccacgtgc ttcaccttgt ataagttttg tttgagaatg atgcgcttca
    12961 agtagtgctt gttctgcttg ggcgatttgt tcgtctgctt gagcgaaatc ccctttttta
    13021 gcggaatcaa tggctaacat agcatcgctt ttagcgttac caccgaacac gatcaagctc
    13081 ataatagttt gctctaaatc catctgtaaa cacgtcctta aagttttggt ttttaaaaat
    13141 tattcagcag taacgccttc agcagcaagt gcttcttttt cacgacgtag ctcttgaatt
    13201 tgagcaattt tcgcgaatgg aaggaagatt aggatagata gacctaagtt tacagctgca
    13261 agtacgccac ctgcgatact ttgtgttgca agtgctccac cgataattgg tggtgtagtc
    13321 caaggagtta cgatagtaca agctggtacc caaccaatag ctgttgcaaa gtaagctaca
    13381 gttacaagta caagtggtgc caagatgtac ggaatgaaca taattggatt caagacgatt
    13441 ggaagaccaa acatcattgg ttcgttaatg ttgaaaatac ctggcgctgc agacaattta
    13501 gaaactgtca tgtacgcttt atgtttacga gctacgataa agatagcaat gattaaaccg
    13561 atagttgccc cagttccgcc taagttaacg aaagagtcaa agaaaggttt gttaacgatg
    13621 taaggaagtt ctttaccagc ttctagtgct tttacgttag cttcgatagc tgggatgttg
    13681 attgtttgca tgaacgggtc gataatgttc gcaccgtgta aaccaaagaa ccaaaggaaa
    13741 gcagaaacaa atgccaataa taaagctgct ggcaaggagt ttgcaagacc catgaacggt
    13801 tcttgtacta attcgtagaa agaaattact aagttagtca caccagctgc ttggaagaac
    13861 gcagtgataa gaccaaagat agaaacagtg atcattgcag ggaataaagc tgcgaatgaa
    13921 cgagaaactg ccggtggaac accatcaggc atgttgataa ttaatttcgg gctaccactt
    13981 aaacgagtga agatttcagt ggaaagaatt gcaataatta atgctaagaa aagaccagtt
    14041 gatccaagac caccagtgtt tgcaacgccg tctgcacctg gagcaattgc gccaattgtg
    14101 aagaaagttg ctacagaaac tactgcggaa gaaagtggat ctttgtcata agatttagct
    14161 aagttgtaag ctacagtgaa agcgataagt agtgctaaga tagcaaaagt accgttccaa
    14221 acgtttccgc cgaatgcttg ccaagttcct tcaccaaata agttattcat gaacttttgg
    14281 taagctggaa ttgggaagtt gttaattaaa acggcgaaag accctagaat cataagtggc
    14341 atagttgtaa tgaaaccatc acgaattgct actaaatgac gttgtccacc aattttggca
    14401 gcgtagggaa tgaaatattt ctccataaat gcgataaaac cattcatttt ttattctcct
    14461 ttttgaggga taaagtaaca gccgggttaa gacgaataca taatttctaa aacatggcgt
    14521 tattactata cctctttagt tttttataat tttcagctag ctagctgtaa ttaccctctt
    14581 tttacttcat taactctaat gcttgttcta aaactttgtc gcctttcatc attccgtaat
    14641 caacactgtt aataacagct aatggaatac cttttggctc taattttttc ttcatgtttc
    14701 cttctaagaa acgtacttgt ggtccaagta ataaaacatc gatttcgtct aaatggttag
    14761 ctgcttctgc ttctgcaacg gcgaagattt ttgcttcaag gcctttttct gcagctgctt
    14821 tttccatttt tgtaactagt aagctggtag acatacctgc tgaacatact aacatgattg
    14881 ttttcatgat tatttcctcc tctagataat tctcttaaca cttattatat atgcaagtac
    14941 cgtgccaact ttaaatgtgg ctataaaagg gttttcattt tgttttttgc ttacacattg
    15001 gctttttttg tgtgtaaatt ttacacacat agagatatta acggaatctt tatgcggagc
    15061 tttagaatct taacactgtc tttatgcgtt tgttggtagg attagtggtg gaaagagtac
    15121 ggtgaagggg tgaacggaaa atgggtgttg ttctagtaat tgctggaata atcggtttag
    15181 gtttgttggt atatttattt tatgtgttat ttagaggtga ggacttatga agtatatcgt
    15241 gatgcaagat gcgttttttg ttgtattgtt attagttttg gcggtgcctc ttggaattta
    15301 tatgtataag gtgatgattg gggaaaaggt atttttgtca cgagtgcttg agccggttga
    15361 gcggtttggt tatcgattga tgggtgtgag tgaggttggc atgtcggcga agcgttatgc
    15421 agtatccgta cttgctttta gtgcagttgg ctttgtattt gtaatggcgg tgttgatgct
    15481 acaaggcttt ttaccgctca acccggaagg tatgaaagga cttagtttta gtcttgcatt
    15541 taatacggcg gcgagttttg tgtcgaatac gaactggcaa gcttattctg gtgaggcggc
    15601 gttatcttat ttttcgcagt cgattggttt aacggtgcag aactttgttt cggcagcgac
    15661 agggattgca gtattatttg cggtaattcg tggctttata tggaagaaac agaaaacgat
    15721 aggaaatttt tggcaagatt tatttcgagt gacgctatat attctattac cactttcgct
    15781 tattttggcg cttcttttag tgtcgcaagg agtggtgcag tcatttgctg attattcggt
    15841 tgtagagacg cttgaaaatg gagcaaaaca attgattccg cttggtccag ctgcaagtca
    15901 aattgcgatt aaacaactgg gaacgaatgg tggaggcttt ttcggggcaa attcggcgtt
    15961 tccgtttgaa aacccatcta gttttactaa tttaatagaa atgttggcga ttttacttat
    16021 cccagtggcg cttgttgtga tgtttgggcg tgcggtgaag gatagtaagc aaggacgcgc
    16081 gattatgaca gcgatgatga ttgtttttgt tattggtgtt gttgcgataa ctatctccga
    16141 acaatttgca ggtccacatt atcaaggtgt tgcgacttct ggcagtatgg aaggaaaaga
    16201 ggttcgtttt ggtgttggcg gttcgtcgct ttttgcagct tccacgacgg cagcctcgaa
    16261 tggagcggtg aacgcaatgc acgacagttt gactccgctt gggggactgg tgccgatgtt
    16321 ctttatgcaa ctcggtgagg ttgtttttgg cggtgttggt agcgggcttt atggcatgat
    16381 tggttttatt attttgacgg tgtttattgc ggggcttttg gttgggcgga cgccggaata
    16441 tttagggaag aaaattgaac cttatgatat gaaaatggtt tgtttgctta ttttggttcc
    16501 gccgctgttg actttgtttg gaactgcggt tgcggtgatg atgccaagtg tgcaagcttc
    16561 tgtttcggcg agtggggcgc acggtttttc cgaggtcctc tatgcattta cttcgatggg
    16621 aaataataat ggtagtgctt ttgctggatt tgcggcggac acgacgttta caaatatggt
    16681 tggcgcagta atgatgttac ttgctcgttt tattccactt gttgcggcgc tttatttagc
    16741 gcaaaatatg gctggaaaga gttcggttgc agcgagcagc gggacgttat cgacgaaaaa
    16801 tggcatgttt attggtcttt taattggtgt tgtggtactt gttggcgcac ttagtttctt
    16861 gccagcactt gcgcttggac cgattgcgga cttctttaca actttcaaat gaggtgaatg
    16921 gaaatgatgg aaaaaggtat ttggaaagat gcgctgattc agtcgacgaa aaaactgtct
    16981 ccaaaactgc aagtgaaaaa tccggtgatg ttgcttgttt atgttggtgc gattttggca
    17041 acgagccttt attttctcgg tttcttcggg atttcagatg agaagtctgg ttatacgcta
    17101 gcaattgcgc tgattttatg gtttacagtg ttatttgcga attttgcaga ggcgattgcg
    17161 gaaggtcgcg gtcgagcaca ggcggatagt ttgaaaatgg ctcgaaaaga cgttttagct
    17221 cgaaaattga agaatattga tgataaaact gatgtgatcg aaattgcttc gaatgacttg
    17281 aaaaaaggcg acattgtgta tgtccttgcg aatgaacaaa ttccgatgga tggcgaggtt
    17341 attgaaggtg cggcttcagt tgatgaaagt gcgataactg gggagtctgc acccgtaatt
    17401 cgagagtctg gcggggatag aagtgctgtg acgggtggaa ctacgcttgt ttctgactgg
    17461 cttgttgttc gtgtgacggc ggtctctgga gaaagtttct tagataaaat gattgcaatg
    17521 gtggaaggag cttcacggaa aaagacgccg aatgagattg cgctacaaat tttgcttgta
    17581 acgctttcga ttattttttt ggcagtttca gcgacgcttt taccatttac tgaatttgcg
    17641 agtaagcagg cgggtgctgg atcggcaatt tcgattacga atgtgattgc tttgcttgtt
    17701 tgtttggcgc caactacgat tggtgcacta ctttcgtcga ttggaattgc agggatgagt
    17761 cggttaaatc aagcgaatgt tttagcgatg agtggtcgtg cgattgaggc agctggtgat
    17821 gtggatgtgc ttttgctcga taaaactggg acgattacac tgggaaaccg caaagcaagc
    17881 gaatttttgc cagtggatgg tgtgacggaa caagagctgg cagatgcggc gcaactttcc
    17941 tcgattgcgg acgaaacagc ggaaggcagg agtattgttg tattagcgaa agaacggttc
    18001 gacattcgcg gccgagattt tgctgaaatg cacgcagaat ttgttccctt cactgcaaca
    18061 acccgaatga gcggaattga ctatcaagaa aatacgattc gaaaaggtgc ggcggatgcg
    18121 gttcgtgctt acgtaacggc gaatggcggg acgtacccaa aagagtgtga tgcaattgtg
    18181 agcaaagttg ctggtgctgg tggtacaccg cttgtagtag tccgaaataa caaagtgcta
    18241 ggcgttattt atttaaaaga catcgtgaaa aatggagtga aagaacgttt ccttgattta
    18301 cgaaaaatgg gtattaaaac cattatgatt accggtgata acccaatgac tgcggcagcc
    18361 attgcggcgg aagcaggggt cgatgatttt ctagcagaag caactccaga agcaaaattg
    18421 gaattaattc gtgaatatca acgggaaggt catttggttg caatgacagg tgatggcacg
    18481 aatgacgcac cagctcttgc acaagcggat gttgctgttg cgatgaatac aggaacacaa
    18541 gcggcaaaag aagctgggaa tatggttgat ctggattcta gtcctactaa attaattgat
    18601 attgtgcgga ttggcaaaca acttttaatg acgcgtggtg cactgacaac atttagtgtt
    18661 gctaatgatt tagcgaaata ctttgcgatt attccagtgc tgttttacgg tattttccca
    18721 caacttgaag cacttaattt aatgggatta accagcccga cgagcgctat tttatccgcg
    18781 attatttaca atgcggtgat tatcattatt ttaattccgc tttctttaaa aggcgtgaag
    18841 tatcgtgaaa tgccggccgg gaaattactg agcagaaata tgttgattta tggtctgggc
    18901 ggtttgattg ctccatttat cgcgattaaa ttgattgata tgctgttaac tgttttagga
    18961 atcgtttaag agggggagaa aacatgaaaa gatttatgca aatttggaag ccggcagtag
    19021 ttggatttct acttttgaca ttgatgtgtg gtgtggttta tccaggtatt gtcactattt
    19081 ttgcaagtgc agctttccac gacaaagcaa atggcagtat aatagaagaa aaacgagcag
    19141 atggtacgac cggaaaagtt ggttctgctg aaattggcca aacgtttact aagcctgagt
    19201 acttgattgg acgggcagca agtgacgggg tggcgacaaa cttaaaccct actagcgaag
    19261 aacaaaaaca attagtagaa aaacgaattg cttggtggca taaactagat ccgacgaaca
    19321 atcgagttat tccaatggat ctcgtaacag catcagcaag tggcgtggat ccggatattt
    19381 cagaggctgc tgcggcatat caagtagacc gaatttctag agaacgaggc atttccacca
    19441 aacaagtcaa agaaattatc gcagaacata caagtgaccg attgttaggc ttttggggtg
    19501 agccaactgt gaacgtctta caagtgaatt tggcattaga tagattgaaa atgtaagttg
    19561 gaggcgagta tatggaaacg aatcgtccaa gtccggatgc gctactggtg aatttgcaag
    19621 aagaaacaga ttcatccgtg ggtaaattaa aaatatattt tggctttgcg gcaggtgttg
    19681 ggaaaacata tgccatgtta agtgacgcca aagatcaatt agcagcaggt gtggatgtcg
    19741 tggcgggtta tattgaacct catgctcgcg aggaaacgct gagaatgtta gaaggaatcc
    19801 cgattattcc accaaaagca attactcaca aaaatattgc gctcaaagaa ttcgatttgg
    19861 acgaagcgtt gaaacggaag ccggaactta ttttggtaga cgaactcgca catacgaacg
    19921 catcaggtgt acgcaataag aaacgtttcc aagatgtgga agaattgctt caagcgggaa
    19981 ttgatgtgta tacgactgtc aatgtgcaac atattgaaag tttaaacgat attgtagaag
    20041 gcatcaccaa agtagctgtt cgcgaaacga ttcctgacta tgtttttgat gaggcggacc
    20101 gagttaaatt aattgatatt gaacccgatg aacttctaaa acggttagaa cagggtaaaa
    20161 tttatcaacc ggcgcgcgca aaaacagcta tgcagaactt cttcactaga gaaaacttaa
    20221 aactcttgcg tgaaattgcg atgcgaaaag cggccgaccg aattagtcac gaatacgatc
    20281 aaacaggtgt ttatccagag aaacgggcga gtagtaaatg gttagtctgt attggaacgt
    20341 cgccttcatc tgcaaaactc attcgctgga cagcgcgcac tgccgaggct ttccgcgcac
    20401 catggacggc cctttatatt gaaaatgaag aaaatgatta tatgaccaaa gcagagaaaa
    20461 aatgtttacg ggaaacgatg gaactcgctg aacggcttgg cgctgaaatt gtcaccctcg
    20521 ccggacatga cattgcagaa acagtagctg agtatgcccg gttgactggt gtgacaaata
    20581 tcgttgtcgg gaaatcgcgt cgccgcatgg gtttaaggtc tttatttgaa gatgattttg
    20641 aggatcgtct cattacgcac cttgataacg ttgatatgca tattatcccc tcgagccaac
    20701 caaaaacgaa aaagcgtcga atgaaaatgc gttttaaaag ttttttaacc tggcatgaca
    20761 tggcgaaaat gattttactt ctaacattgg caacggcgat ttgtgtcggt ttaagtgaat
    20821 ttggcatcgg tgatcaaaat gttattatgg tatatatttt atccgtgtta attatttctc
    20881 gtgtaacaag cggctatgtt tatggcgtta tgggttctat cattggtgtt atgttattta
    20941 atttcttttt cacgacacca ctttatacgt ttaatacaat tcaagcgggc tatccggtga
    21001 cgttcggaat tatgctttta gtcgctctta ttacgagtgc gctaactgtc cgaattaaaa
    21061 cccaagctag cctggccgtt gagcgagaac gtcgaaccga agtgctttat gaaatcaata
    21121 aacggctatt agtcacccgt aatttaaaag gaattatcga tttaaccaac gaatatattt
    21181 tgcatttatt tagccgttcc gttatttttt attctgcgga tcctgccaaa agtaataaag
    21241 ggattttcgt gcaagcagaa ggaaaagaag atgcgagtgc gcttcttagt gcggatgaag
    21301 aagcggttgc ccactgggta tttaaaaata aaaagcgggc gggtgctggg acggatacgt
    21361 taatgggggc atttggttat tatatgccag tgatgtcaca ggggaaagtg cttggtgtta
    21421 ttggtgtttc ttgctcccca gaagatggtc cacttacaca agataatcgg atctttttac
    21481 gaatgattag ctctcaagtg gcactagctt tagaacggca atatttatct gaagaacaac
    21541 gccaaatcgt catcgaatca gcaaaagaaa aaatgagaag caatttactt cgggcaattt
    21601 cgcatgattt aagaacaccg ctcactggca ttgttggagc aagttctgcc ttacttgaaa
    21661 aagaaactga gctagataaa gaaacggaac ataatttaat taaaggtatt aaagatgact
    21721 ctggctggct cattcggatg gttgagaatt tgctttctgt gacgagaatt agtgaagggt
    21781 tagtgagttt ggaacgagct ccagaagccg tagaagaaat tgtaggtgag gctgtcggtc
    21841 gaatcaaaaa acgtttcgcg gaccgaacaa tccatgtcaa agtaccgcgc gaccttctta
    21901 tggttccgat ggatggcacg ttaattgagc aagtccttat taatttaatg gaaaatgcgc
    21961 tacgtcatgg tggaactggt gcagaagttt gggtagacgt gacgaaaacg aagcaaagtg
    22021 cgatttttag tgttcgtgat aatggaaaag ggattccgga aaaacgcttg ccagatttat
    22081 ttgatacttt tgctgtggaa gcgagagagc gttctgatat gtcacgcgga ttaggacttg
    22141 gtttatcgat ttgtatgtcg attattcgag cgcatgacgg gactttagaa gcgaaaaata
    22201 acaaacatgg cggggcgaca ttctggttca ctttgccact agacggagga gatggaaaat
    22261 gaacagcaaa cgacttgtgc taattgtgga agatgaagag ggtatcagta attttatttc
    22321 agctgttttg actgcgagtg attactcggt gattaaagca gtgaatggaa aagaagcgct
    22381 agagcagaca gcaagccatt cgccagatgt tgtgctactc gacctaggtt tgcccgatgt
    22441 agaaggacta gacgtgctcc gtgatattcg tgtttggtca aaagtgccga ttattgttgt
    22501 atccgcgcgc gatcacgaac gagagaaagt gacggcactt gaccttggtg cagatgatta
    22561 tattacgaaa ccattcggca catcggaact actggcgcgg attcgaactg ccctaagaca
    22621 cattcaacca agcagcaaag aagcgccaaa tgatcatatt attcgcattc aagacctgta
    22681 tattgatgac gaccgccgac ttgtcaaaat gggcgataag gaaattcatt ttacgccaat
    22741 tgaatataaa attttgcttc tattagctcg ccacgccgga aaagtcctta cgcatgattt
    22801 tattattcgc gaaatttggg gaccttatcc aagtgaaaac caagcacttc gggtcaatat
    22861 gagtaatatc cgacgtaaaa ttgaacaaaa tccggcagaa cctgcataca ttttgacaga
    22921 agttggggtt ggataccgga tggcagaaga ataataatat gttatgataa aaataaacgc
    22981 caggaggaat taatatgcat aaaacaatcc gtagcgtaga cgtttattat gaaaaatatg
    23041 gtgaaggaat accgataata atgattcatg gttttggtcc tgattcgcag ctgatgattg
    23101 gttgcatgga gccggtcttt gataaggaaa gtccattttc acgcatttat gtggatttgc
    23161 ctggaatggg aaaaaccgag aattacgatt caatccaaaa tgctgaccat gtactcaccc
    23221 ttttactaga atttattgaa gcggtaattc cgggagagca attcgtactc gccggagaat
    23281 cgtatggtgg ttatttagcc cgcggaatcg cagcgaaaat gccagataga gtacttggag
    23341 tcttacttat ttgcccagtc atctatcctg aaaaagaaag aagaacgcta cccgaacaaa
    23401 aagtcatgta ccaagatgat acgtttgtac ggtcgctatc aaaagaagac cgagcgtact
    23461 tttcaaaaag tggcgttatt ttaacagcaa gaaactggaa tcgtttcttg gcggaagtga
    23521 tggcgggaat gattaatgca gatggagaat ttttagaccg attatctgcg aactatgcgc
    23581 tgagctttga tccagacgaa aaagcgcaat tcgatgtgcc ggcattattc ttatttgggc
    23641 gtcaagatga tcatgtggga tacgcagacg ggcttacatt gcttgaaaaa tatccacatg
    23701 cgtcgattgc tatccttgat tttgcaggac ataatttaca aatcgaacaa ccaaaaatat
    23761 ttacaacaat ggtagaggat ttcttgttcc gcgtgaaacc agaataagtt aacctttgtg
    23821 accaccaacc atttcagaac gttttaagcc agtcgctcca tttaataaac tgcttgcgtg
    23881 catgagggat ttaaacccat aacgcgaacg gattttgtcg accgttattt ctaattgctc
    23941 atgatttaaa gttcgagtag catcctcaaa taaattgagc tgcaaccctg ttttcaaagt
    24001 aatcttaccg catgaaatag caatggagcg cacaggttcg cgttcatcgt aacgtctaaa
    24061 tagttgcagg aaataaggaa taagcgcatg actactacta gtaggaggga ttttagcttg
    24121 atggctgaat ccttttttta tgctgtattt actgtagccg atacttagat gaataacagc
    24181 agtatccaca tgattttggc gtaaacgcat tgctacttcc tcaaccattt cgcggatgac
    24241 aatctctact tcggccggca catgatagtc tttttcaaga atttggcttt ttccgtagct
    24301 tttactaact ggaacatatt tttcatttaa aagactataa tcgatgccgt gagcatgata
    24361 ataaagttgc tctccgacta cacccattgc gttttttaac acttgtggcg gcgtttggct
    24421 tagttgatac atattaaaga ttcccatttt ttgcaggcga acagcagtcc gacgcccaat
    24481 tccgcacaca tcatccaaat gtctgatttt ccaaatggtc tcgggaacgt cttcatagcg
    24541 ccattcagca atgccgtcat cccggttttt agccacatta tcgagcgcga gtttggcaag
    24601 aagagggttg tcgccgattc caactgtaac gtatagccgc aattcttcta aaatatcaca
    24661 ctggattttg cgaacaattt cttccgtgct accgaataac aaatgcgatc cggtgatatc
    24721 taaaaaacat tcatcaatac tataaacatg aataaactca gcgggaacat aacgtctaaa
    24781 aatggcttga atcatcgcat ttacttttag ataaagtttc attcgtgggg gtgcgataat
    24841 aattcgttta tcccaggtgg gcagttcata cattcttgag ccggttttga tgtgatgttc
    24901 ttgtttcatt tttggagtgg cagctaaaac aagcccgcca gcccggtcgg cgttactcat
    24961 tactactaaa tatgcttcaa gtggattcag ccgacgtttg acacattcaa ctgaggcgaa
    25021 aaaacgattt aatatcgatg cacaaaatat cacggcgcgg tgcacggcta taatcttcta
    25081 tttgtaccat ttttcgacac tcctttcttc tacgtttcga attgcagaga aggaaagcgg
    25141 gacagtcccc tcagagtttt taatgtaaat ggtgttgttc tccacgcctg aaatacgacc
    25201 aataatatca ttttcaggag cagattctgg gtttaatggc tttttctgga taacaagcgt
    25261 agactgatgt gtcatcgcgc tagctagcac actttcgata aattctgtag tcatagcttc
    25321 tttccatact aaagttggtt cagcgtcttg cattgcttct gtatgctcgc ttaataaaaa
    25381 accgccccat ttcttcatgc cgcgatcttg gtagctcata tgatgacacc tccaatattt
    25441 ttaaataatt agctgttgct taaatatatt atacgaacaa acgttcttat ttacaatgtg
    25501 taaatatcct catttatgct agcaaaacgg gaataaatta ctatttgtga actattaata
    25561 aagtggacat aaaaaaagac caagcctgta aaattagact tggtcgttat tattttttta
    25621 agcctggcta tcttcgtaag cggtgatttg tcctacacga tttgcgtgtc ggccaccttc
    25681 atacgctgtt tctagccaaa ttttgacaat gtcttctgct agccctgggc ctatgactct
    25741 cgctccaagc gcaaggacat ttgtatcatt atgttcgcgc gtggcgtgag cgctaaatgt
    25801 atcgccaaca agcgcgcaac gaatgccttt tactttatta gctgcaatac tcataccaat
    25861 acccgtacca caaactaaaa tgccgcggtc aacttcttgg ttaacaactt tttcactaac
    25921 ggtaatcgct agtcccggat aatccactga ttctggtgct tcggggccaa attcttcata
    25981 actaattcca acactttcaa gataagaaat aatacttttt cgtaattcaa ttccgccatg
    26041 gtctgaagca atggcaactt tactaactgt cattttttct cctcctgccg tataatcaat
    26101 accttcatta tacatgaatt agagtttttc gacagtcttt ctgttgcgcc aaggttttgc
    26161 gtgaacaata ataacgtcgc aaggtgcatg agcggccgta tattcagaca cactaccaag
    26221 aataaattgc tctgttgctg aaagtccagt tgcgccaact aaaattaaat caggctcgaa
    26281 attccgcgtt atttttttat tgaaggtagt ttttggcgta ccaaagtgaa caaaagtttc
    26341 tacatgcgag acaccagctt tttcagcttc ttttttgtac atttcaacta attcttctcc
    26401 gtaagctttg gcttttttgg cataggtttg ttcataatcg attaatggtg caatccggcg
    26461 cacatccgcg acaaagccaa taccaagcgt agcgccatcc attttggcaa attgaacagc
    26521 tcgtcttagc gcggcttccg cttcatttga tccatctaca ccaacaagaa tccgtttgta
    26581 agcagacatt ttgtatcacc ctctcaaaag ttttcccctt atttacttaa tacccataaa
    26641 taaaagaaag aagcatgatt aaagagaaaa ttttgtggta ctatgaggaa aaggagggct
    26701 ctttatggca aagctagaaa cgttttatcc cattgtagct acaccaaagc gtgcaggcta
    26761 taaagaatat ctaccgagtg cggttcttac aggctatatt cgctgttttt gggaggcgga
    26821 tgataagaat ttcccgggaa ataatttagt ggttcctgat ttatgtgcgg atattatttt
    26881 tacaattgat agtaaaacag ggctagtgac ggatgctata tttgttggcg ttagtgatgc
    26941 accgtttgag tctgacgatg aaagtaatac cgagcttttt gctgtgcgat tttatgcgtg
    27001 gtcgttattt ttatttgtcg aacaggactt gactggtagc atgaatcggg taaaagagcc
    27061 ggaagagatg tttgctggat ttgtttcgtt ttttcaagag aggtttgctg aaatgacgac
    27121 gaacatggaa agaatagctt tattagaaga atttttactg cgaaaattaa tgatgcttgg
    27181 caagcaagtc catcctgatt ttttaaacgg tattgataag ttactacaaa atcccaatca
    27241 acttgcgtta ggagctgtat ctgttcggca gttagaacgg ctatttcaaa aacatatggg
    27301 acttgcacca aaacagacag caaaacttat tcgtttccaa aaagtattac aggcattata
    27361 tgagaatcca agtgtgccgg gcgctgagct tgcttatctt catggtttta cggaccaggc
    27421 tcacttaatt aaacaattta aacgatatag taatcacacc ccagaagaaa tgaagcaaat
    27481 ttttctgcaa aatgtcgcaa atatacaatg aaaaacgtaa atgctttgtt aaactaacga
    27541 tatggaggtg cttaaaatga ttaatgaatt tgtttgtaca aatatttcca cgcaagatcc
    27601 ggcggcgttg gttgcgtttt atcacgaaaa attgggaatt ccgatagtat tcgaagggta
    27661 cgacaattat gacggagcga aattaggttt ttctgaaaag gctcccggga ttattgtttg
    27721 gaataatagc aaatggggcg aagcaagcga atctaaagtg gagtttgttt tctcgtgtga
    27781 tactaatttg gatgagatgt accgggaact tcaaacagcg ggagtggaga caccagaacc
    27841 tcgtgtggct gagtggggcg gacgtgaact gaatttactt gacccagatg gcaataagat
    27901 tatgattttg gagcccgcac aatgagcgat gaatttgctt ggatacagaa ggaaatcagt
    27961 ggtcttaaag gagtccagta ttcgtttaaa gaagaatggg gagcggagcg ctatcacgtt
    28021 ttggatcagc taatggcaat gcgcggaacg aataaagaag ggcagccgat tttaaccttg
    28081 aagtgcgatg ccgaaaaaag tgagcaactt cgcgcagaaa atcgagccat cgttcccggt
    28141 tattacatga ataaacgagt ttggatttct gttttattgg aagaagaacg agataaagac
    28201 ttgattcgcg cattaattca gcatgcgtac tcagaagcga agaataagtt gccaaaatat
    28261 aaacaagcgg aactttttga ctaatttagt taagaagttc ttatttctgt tataatgaaa
    28321 ttgattgtga aaaagaaaac aaaaaggaga tgaaaagatg gatattaata tgtttatcct
    28381 atacttcttc atttattctg ttcttggatg ggcttgggag gaaatttttt gctcgatttc
    28441 agagaagaag ttagtgtatc gtggttttct ttatggacca tattgtccca tttacgggtt
    28501 tggggtaacg acagttttaa tgatgatttt accgtttcaa aataacttat gggccttatt
    28561 tattttttcg atgattattt gtacggtgat tgaatatgtt accgcaacga ttttagaagc
    28621 attattccat acaacatggt gggattatca caattggcca ctcaatgtaa aaggacgaat
    28681 ttgcttgccg atttcgattt tttggggatt tgcttgtatt atcgttgtac gcttcttgca
    28741 cccacttgtc accgaatttg cagattggat tttaagctgg ggtggctgga ttattcctgc
    28801 actcatcgtg gttctgatgc ttattgatac gattaaatct gtcacaagta tgctatcatt
    28861 ccaaaaagca cttgccgaat ttaatgaaaa actaactgcc caagcaaatg aactaaaagc
    28921 aagcgtaaaa gaacgggcga aagaatttga agaaggactt ttgaagaaac aagaaaatgt
    28981 tgatatgaaa attgctgaaa tagaagcaaa acgtaagcaa gacaaagaac ttgctgccag
    29041 catgcgcaaa cttaaattta atgaacgacg aatgttaaaa tcgttcccga aaatgaaagt
    29101 gaaacgcgcg gcgccattta agaatttcaa caaaagttta cttcgggtcg ataaacagaa
    29161 aagaaaatag agaaactgat tatggcgcga atggtatttt ttatcatttg cgcctttttt
    29221 tgcgttattt tttacaaaac gtgtagaaag aacagcctat cttttgtatg attaagaaga
    29281 aacatcgccc cgcaaagctc cgttacttca ttctcatttt tgtttcaaag tagattttac
    29341 ctaccttcaa gaagtttcat aatctcgcta tatatcaagc tttacaagca actttcacat
    29401 atttgcaaat aataggattg ttaaaaaagt cacaagtaaa gcccaatgat gtacattctt
    29461 tccgcaagtt attgggatga aagcgtgtac atttttatta gatttagatt tataattaaa
    29521 acgaacagga gggaacgaca tgtatttgga tgagagaagt aattcacttt taaaagaact
    29581 cttacgacat cctgacacat cgagtacgaa cttacaagca aaattcggtt taactcgaag
    29641 acaagtcgac tatagtttcc aaaaaattaa taattggcta gaagaacaga cttacccgaa
    29701 gattcatcgt gccgcaaatg gtcgatttat cgtagaacct gacctgtttc aaatcattgg
    29761 tgaggaagat ggcgaaaaaa cagattggta catcccgtca gaaaaggaac gcgctagtct
    29821 aatcatcctc atgttaacaa caggaagtga agagttatcc cttaatcact ttataagcga
    29881 gctggaggtg agcaagaaca ccgtattacg agacttgaag ctggtacaaa agacacttga
    29941 aaaattcaac cttgaagtta aatattcgcg gatgcgtggc tatttaattg acggagacga
    30001 gtggaatcag cggacggcac tcatttatgc ggcagaacac atcatagaaa gttttggcgg
    30061 cgaagagtat ttacaggatt tcatgcaagt ggacgaagcg agaattaaag agcttcggga
    30121 aaaattggaa caagttgagc atcatctgaa tttgcatttt attgacaata aaatgcaaat
    30181 actgccttac attttagaag ctgtttttcg gcggatgaag aaggggcaaa caattacgac
    30241 atctttcctg attgactaca atgaattgtc agatactcgg gaatacggag cagcagagat
    30301 ttttattgaa gaagagccga atatgccaga agcagagcga atgtacatca cattacaact
    30361 tttaacttcc aatgtacttc cgaaacaata tttgaaatcg gaggaaacgc acaagttaag
    30421 actggcgctg gaacaagttc taagcgaatt tgagaaaaag gcttgtattc aactagtaga
    30481 caaagaatcg ttacttgaaa aattatttgc acacattaaa cctgcgtatt atcgaattaa
    30541 gtatcatctt acaacagatt acagcatttt agacaagatt gatcaagaat tccaagccgt
    30601 gcattacatc gtgaaagagt cgttagcacc attagaacgt tttattggta gcaaagttcc
    30661 tgaaaatgaa agtatattta ttaccctttt cattggaggg catttaatcg aatccacaga
    30721 gaaattacaa acgagactaa aagcagttgt ggtttgtccg aacggattgt cgatttcgag
    30781 attgatggaa aaaacattac gaagcctttt tccggaaata tttttctatc aagcgatgtc
    30841 gattcgagaa tttgaacaaa caaagttagg ttatgacatt gtattttccg cagtgccact
    30901 ttcgaccgac aagaaatttt tccttatcaa ccaactgatg gatgggaaag aacgcctgga
    30961 gcttagacgc cgggtgatgc gagcggttta cttagtggat gaggtgaata tcagcgtcga
    31021 tcaattaatg aaaactattt ccaaatttgc tgatattaaa gatgctgccc gtcttgaaaa
    31081 agtgctagca gattatttaa tgccagttcc agaagaaaac acatccaaac acgaaggcaa
    31141 aagcacactc gcagatctac tcgaagtaac gcgaatcaca cgtaagaaat cagtgaaaga
    31201 ttggcatgag gcaatttatc atgcggcttt accgttactt tcggcgggag tggtggaacc
    31261 agcctacgtg gaagaaatga aacggcaata tccggcaccg attatgaaca tcattctccg
    31321 taatacaata gctatccctc atgctgaaac ggaaaaagga gtaaatagcc tcggaatgag
    31381 cttgctttat ctagaagaag gcctgccact tgaaggcggt aaagagctac attttatcgt
    31441 tgtcattgca gccatagata aaaacgctca cttcacagct ttactacaat tgatggaatt
    31501 atcggagaac aaaaaagaac tgaaaaaact tgcggatgct gcgaacacag aagaaatgca
    31561 ccaaataatt aaaaacttca cggacttgga aacaaaaaag acaatgtaga gaagtcagaa
    31621 agaattacag gaggatttcg taatggattt agtacaattt ttgaaaaaag gaatggtttg
    31681 ggttcaatcg gatatcgaga aacaagagga cctattccaa atggtcgcag aaagtggaaa
    31741 gtctgaagga tatgtaacgg atgacttttt aacaagacta acagaccgtg aacaaacctt
    31801 tccaacgggg ctaaaattag atggatacgg cgtggcatta ccgcacacgg atccagaatg
    31861 cgttacggaa caatttatcg ccgtaatcac tgtgaaagat ggcattccat ttaaattaat
    31921 ggaagatgct ggtcaaacgg ttgaagcgaa tttgattttc gtactcggac taaatgaacc
    31981 tcacagccag ctcgcggtac ttcagcaatt gatggggacg attcaggata aagacaatgt
    32041 agccgcatta ctcagagcga aagatgaaga cgaagtaaaa caaattttag aaactattac
    32101 cgtttaaaaa aaacaggaaa attagccgcg ggaaatcgca gcaattaatt aggaggaatt
    32161 tatcatggga caatttaaaa ttttggtagc ttgtggagca ggaattgcaa catcaacagt
    32221 agtaacggac agagtagaac gtttggtaaa agaaaacaac gtggacgcag aagtaaaaca
    32281 aattaaaatt tcagaagcag catctatgca agacggagcg gatttaatcg tatcaacaac
    32341 tattttacca acaacttaca aaatcccagc gattattgca acttcttaca tcactggcat
    32401 gggtatggaa gaattagacg aagaaatact tgcgcacctt aaataaaggc tgcgcaaggg
    32461 agtttagaaa tcatcattaa acagagaaaa aaggaggaaa tattaaatgg atacacttct
    32521 gtcaggagta cagtatgttt taaacttggg gcctacagtt attttgccta ttatgatttt
    32581 ctttattgca ttaattttcc gagtaccagc aaagaaagcg cttcgttcag cgattacgat
    32641 tggtatcggg tttgtaggta ttaaccttgt tattagttta ctatctagta acttaggtcc
    32701 ggcagcgcaa caaatggttg agcgttttgg actgaattta acaattattg atgcaggttg
    32761 gccagcagca gccgcggctt catgggcttc tccagttgca gcaattttaa ttccaatctg
    32821 tttggtagtt aacttagcac ttattttctt caaagttacg aaaacactcg atattgatat
    32881 ttggaactac tggcacttca tcgcagcagg tgcaactggt tatatcgtaa ctggtggtaa
    32941 ctggtggttc gcgattcttt gtgcgatcat ctatgaagtt gctgttcttt ggatggcaga
    33001 cagaacacaa cctatggtag aagaatttta cggattaaaa gggatctcct taccaacagg
    33061 ttctacagca gcattcggtt tcatcggtat tccggttggt tggctaatcg ctaaaatccc
    33121 tggtattaaa aacatccatg ttgacccaga aactattcaa aaacgttttg gtattttcgg
    33181 ggaaccaatg atgatgggtc ttattctagg tattgcaatc ggtattcttg caggctatga
    33241 cgttggcgca gttgcacaac ttggtatgtc catgggtgcg gtaatgttct taatgcctcg
    33301 tatggttaaa attttaatgg aaggtttaat tccaatttca gaatccgctc gtgaattcat
    33361 gaaatctcgt ttcaaaggcc gcgaacttta tatcgggctt gatgcagcac tttcaatcgg
    33421 tcacccagcg aatatttcta ctggtttaat ccttgttcca atcactcttt tcttagctgt
    33481 tatcattcct ggtaacaaag tacttccttt tggtgacttg gcaactattc cattctacgt
    33541 atcattcgta gtagcatctc gtaaaggtaa cattcttcac tctgttttag ctggaactgt
    33601 agttattgca ctagcgcttc ttatggcaac tgacttcggt cttgttcata cagaaatgat
    33661 gaaaggtgtt tacgaattcc ctaaaggagc aacacaagtt agtacacttg atatgggtgg
    33721 taacttcttt aactgggtta ttcttaaatt ctctcaagct tgggcagcta ttttctaagt
    33781 tttgtcttaa tgatatagaa gaggtgatag taacatgaga gcagctgtgt tatacgagaa
    33841 taatgtaata aaagcagaac aaattgatga agcgacttgt gggaaagatc aagttcgtgt
    33901 cgaagtaaaa gcagtcggaa tatgcggatc agatattcat aaaatgcaga ctcgctggaa
    33961 atacccactg cctgctgtaa tgggacatga attcgcaggt gtagttacgg aaattggtag
    34021 cgaagtaaca aacgtagcta ttggtgaccg tgttgcaggg attccgctcg agccttgtat
    34081 ggaatgtaat tattgtaaag cgggcgactt tgcattatgt gacaactacc ggatggtggg
    34141 atcacatttt cacggcggat ttgctgaaaa tgtcgtcatg aaagccgaca atgtcatttc
    34201 tatcggcgac cttgattttg aagaaggtgc gatgattgaa ccacttgctg tatcaatgca
    34261 cggagtactt ggtattcagc cgagacttgg cgatacggtg attgtcttcg gaattggaac
    34321 catcggaatc ttggttgtac aatgcttact tcttgcggga gtaaaagata ttatcgcggt
    34381 tgatatcagt gataaaaagt tagcagacgc gcgggaattc ggttgcaaat acactattaa
    34441 tccaaaaaac gaagacttaa aagaacgcgt ttttgcttat acaaatggtc ttggggcaga
    34501 tatagcgctc gagtgtgctg gttccaaaat aacgcaagaa caatgtcttc ttgtaacaaa
    34561 gaaaaaaggt aaagttggtt ttctaggaat agcttacgca gatgtgcttt tacacgagga
    34621 agcttttgaa aatattttta gacgtgaact tacgctgaaa ggtttttgga attcttactc
    34681 ggcaccattt cctggtgagg aatggcgtac gtcgattgaa ttcgtgaaac aaggtcgaat
    34741 taaactgaaa ccactaattt cgcatcgtta taagctagaa gaaacgaaag aagcgtttga
    34801 tatgattctt tccagagagc atgattataa caaagtgatg atattgccgc agaaaggtga
    34861 cgattaattt gaaagcagta gtaaaaacaa accccggata tgatcaaatg gagctaagag
    34921 atgtagaaga accacaagtc tatggcgaca aagtaaaaat caaagtagca ttcactggta
    34981 tttgcggatc agacatccat acgtttaaag gtgaatacaa aaatccaaca actcccgtca
    35041 cactgggaca tgaattttct ggtgtcgttg tagaagttgg gccagatgta acaagtatca
    35101 aagtgggaga ccgtgtcaca agtgaaacaa cttttgaaac ttgtggagaa tgtatttatt
    35161 gtaaggaacg tgattacaat ttatgtagca atcgtcgcgg cattggtacg caagcaaatg
    35221 gtagttttgc agaatttgtt ttatctcgcg aagaaagttg tcacgtgctt gatgaacgta
    35281 tttcgctcga agcagcagca ctaacagaac cgcttgcatg ttgtgtgcat tcggcgcttg
    35341 aaaaaacaac gattcgtcca gatgacacag tacttgtttt cggaccaggt ccaattggtt
    35401 tgttactagc tcaagttgtg aaagcgcaag gggcaacggt gattatggca ggaattacca
    35461 aagatagtga ccgcttacgt ctagcaaaag agcttggaat ggaccggatt gtcgatactt
    35521 taaaagaaga cttggctgaa gttgtgcttg gcatgacaga tggttacgga gcggaacgcg
    35581 tatttgattg ttctggcgca gtacccgctg taaatcaagg attacctcta acgaagaaaa
    35641 aaggcgattt tgttcaagta ggactttttg ccgaaaagaa aaatgcgatt gatgaagaat
    35701 ccattatcca acgtgaaatt gcttatatcg gcagccgttc gcaaaaacca tcttcttgga
    35761 ttttagcgct cgacttactg gcaaatggca aaatcaatac ggataaaatg attactaaag
    35821 tatacggttt ggatgactgg cgcgaggctt tcgaggcagt tatggcagga aatgaaatta
    35881 aagtattagt gaaatcttaa taatggagga tgggctgtat gaaaaaacat caaaaaaagg
    35941 ataaccgtgc aaacgaatcc aaagcttctc gggctcagat gttttacagt agtcatcctt
    36001 agaaatgagc cgagaacata ttcgcgtatg ttctcggttc catttcatta taagacgtta
    36061 aaagaaaaaa atctattaat gaaggtgaaa ttaaatgaaa ttaacaattg gttgcgacca
    36121 cggcggacgt agactaaaag atgccattgt gaaacattta cgtgaaaaag atattgaagt
    36181 tgttgatatt ggaacatata cagatgaaag tgtcgatttt ccatcttatg cagaagaagt
    36241 tgccaatcaa gtagtaagcg ggcaatctga actcggtatt ttgtgctgtg gaactggaat
    36301 aggtatgagt attgctgcta acaaagtgga cggaatccgt gctgcggttg tttcggatac
    36361 tttctcagcg cgtgccaccc gcgaacataa caatagcaat gttctctgtc taggcgaacg
    36421 tgttatcggt gaaggattag cgcttttaat tgttgatact tggcttgagg catcatttgc
    36481 aggagatcgc cataaacgcc gattggataa aattactgaa ctcgaaagaa agtgaggatg
    36541 aacatgagga aaatagccgc ttcaattatg tgtgcagacc aactacattt aggtgaagag
    36601 ctccgtcgcc ttgaatctgc tggtgtggaa ctactacact gcgatgtgat ggacggtgta
    36661 tatgtgaata atcttgcgct cggtccagaa tatttggaaa tagtgcgaaa caatacagaa
    36721 atccctctag acatacattt ggctacgatt accccactta aatatattga catgtttggt
    36781 cctgtgaaac cggaatatat ttcttttcat gtagaagtag cggaagacgt gtcagaagtc
    36841 atccggaaaa tccgctctta caacgttaaa ccatcgattg cgataaatcc agaaacacct
    36901 atcgaagcca tttatcctta tttagatgat gtcgaaatgg tgttaatgat gactgtaaac
    36961 ccgggttttg cgggacaaaa atttcaaaca gatgtattac aaaagctaca tgatttaaaa
    37021 gcaaaactag ctggaaaagt ccatgcgccg ctcattgaag tggatggcaa tattaataaa
    37081 gaaacagtag gcttaatgcg agattgctta ccagacattt atgtactagg cacatccgcg
    37141 ttatttcatg accgagataa aacgagttat gcagaaagac tagtacacat ttggtcagat
    37201 gtagaaaaac atgtgtaata aagcacaaac aatttaaggg agatgacagt tttgaaaaaa
    37261 acattagata gacaagccgt ggacacgatt cgttcgttat ccattgatat gattgagaaa
    37321 gcaaattcag gacacccagg aatgccgatg ggagcagctc caatggcgta tatgctattt
    37381 gcgaaacatt tagtattcaa cccagccaac ccagaatggt ttaaccgcga tcgctttgtt
    37441 ttatcagcag gacacgggtc tgcgctactt tatagcatgc ttcatttatt tggttatgat
    37501 gtaaaaatgg aagacttaaa acagttccgt caattagata gtttgacacc aggacaccct
    37561 gaatttggat ggactgctgg agtcgatgca acgagtggcc cgcttggaca agggattggt
    37621 atggcggctg gaatggcgct tgcagagtct catttagcgg cggagtataa ccaaccaaat
    37681 tatccaattg tcgaccatta tacgtatgcg atttgtggtg acggagactt gatggaaggc
    37741 gtggcatcag aaacagcctc acttgcagga catttaggac ttgggaaatt aatcgtattg
    37801 tacgattcca atgatatttg tttagatgga gatttaagcg caacgttcag tgaaaatgca
    37861 gcagaccgtt tccgcgcata cggctggcaa gttttacgtg tagaagatgg caacaattta
    37921 gcggcaattc aagaaaaaat tgttcaagca aaattagaaa catcgaaacc aacgctaatc
    37981 gaagtgaaaa cagtcatcgg ttacggcgcg ccaacaaaag caggcagctc cgcaagtcac
    38041 ggtgctccgc tcggtgaaaa agaagcaaat ggtgcaaaag agcattacga atgggcagaa
    38101 gagcctttca cagtaccagc cgaagttcgt gattacttaa gaaattacaa agctcgcggg
    38161 gaaaaactag agggtgcttg gaacacaatg ctcgctaatt acaaaaaaga attcccagaa
    38221 cttgcaagtc aattagaccg cgtgttagcg ggagaagtag ctgccgattg gaacgctaat
    38281 ttgccaactt ttgaagcagg cacaaatgtt gcaacgcgct ctgcttctgg gaaaatgatt
    38341 aacgcaattg cagccgaatt accggaactt ttcgggggat ccgctgactt aggttgctcg
    38401 aacaaaacat ttattgatgc gagcccagca tacagcattc aagacccagc tggtaaaaat
    38461 atctggttcg gtgtgcgcga atttgcgatg ggagcaatgt taaacggaat ggcacttcat
    38521 agcggtttgc gagtgtttgg ctcgactttc ttcgtcttct cagactatgt ccgcccagca
    38581 atgcggatgg ctgctttaat gcaacttcca gtaacgtatg tattcacgca tgacagtatc
    38641 gctgtaggtg aagacggccc gacacatgaa ccaatcgaac aactagcctc gcttcgtgct
    38701 atgccaggcc taacagttat tcgcccagcc gatgccaaag aaacccgcgc tgcttgggaa
    38761 attgccgcaa ctaacacaaa tggtccaatc gcacttgtat tatcacgcca agacttacca
    38821 gtgcttgaaa atgcacaaga agaagtggat gcaggtgtag ataaaggtgc ttatatcgta
    38881 gcaccagcaa atagttccaa accagacgct atcattatcg caacaggatc agaagtgtcc
    38941 cttgcaattg aagcgaaagc cgaacttgcg aaaaaagata tcgacgtttc cgttgttagt
    39001 ttatccagct gggaacgctt tgaaaaaaca accgatgctt ataaagaaag cattttacca
    39061 aaagaagtca cagcgagatt tgcgattgaa gcaggagcaa cattcggttg gaaagaattt
    39121 attgggtcag aaggcgatat gttaggaatc gatcacttcg gcgcatctgc ccctgcgaaa
    39181 gatttgttta acgcttatgg atttacacca gaaaatgtgg cggatcgtgt cgaaactgtg
    39241 attgcgaaag ccggtgtgcg cgtatgacat tcgtagcgcc atcgttactc gcagctgatt
    39301 atatgaacat ggcaaactcc attaaagaag cagaacatgc cggagctgac taccttcata
    39361 tcgatgtcat ggacggacat tttgtgccga atctgacgtt tggaattgat atggtcgagc
    39421 aaatcaagaa aacagcgact attccactgg atgtccactt aatgctctcg aacccagaaa
    39481 actatattga aaaatttgca gcagctgggg cgcacattat ttccgtgcat atcgaagcgg
    39541 cgccgcacat ccaccgcgtc attcaacaaa ttaaggcagc gggctgtaaa gcgggagtcg
    39601 tgcttaatcc aggaacaccg gcgagcgtgc tggatgccgt tttagcagat gtagatttag
    39661 ttttacaaat gaccgtaaat ccagggtttg gtggacaagc tttcattgat tctaccatca
    39721 aaaacatgcg ctatctggat cattggcgcc gagaaaataa cggcagctat gtgatcgaag
    39781 tcgacggtgg tgtaaatgcc gaaaccgcag aaaaatgtaa gcaagcgggc gtagacgttc
    39841 ttgtagcagg ctcttacttc tttagagcag atgataaaat tgcttgtatt aaagaattaa
    39901 aagcgtaaca aaaaaagtgc tacaaaccaa ctagcggttt gtagcacttt tttatggagt
    39961 ggtttaactt cttttaaaga aaaagaagct agtagataac aacgtcaata aacttcctag
    40021 tgcaaaaaag agagcatctt ttgaatcacc agtagttggg aggatattag aggtgttttt
    40081 atcaactttt tttgttgctt cggatgaaat cacagtatca ttagtactca gtgtagtatt
    40141 gtcggtcatt tctccattgg tatttgtatt atcactgttt gctatttttt cataaatata
    40201 ggtaacagtt gcaggggttg tgctaaaagt acccgattca tttccttcca ctttttgaag
    40261 tttatagcct gctatgtctt tgcttttagt ttggtaggta ttaattactt caccggttaa
    40321 aacagtatct tttgctagtg ttttacccga ttcatcttga tattttacag tgactgtccc
    40381 attttggaca gcagtttttt cataaatata cgttacattt tgcagtgttt cagaaaattg
    40441 tcctgtcgca tttccgggtg tttcttttaa agtatagcca tctattattt taggagtagt
    40501 gacgtaattt tcaccaatac taccatctaa tctagtagaa gtagctaatt cattcccaga
    40561 cgcatcttta taggaaacta ggactggttt agtatacttg aagtagataa atggctttcc
    40621 agaaggacca tattcagaaa tatcatagta agaatcaaat cgatttgtcc cagtgaaaag
    40681 tgaaaaagta gattcgagtg gctctgctga aaagtttaat gctttttcgg cttgattata
    40741 cgtaatacca ttcgctaaat cagttatgaa taaattatct gtagtcaaat gagccgaagc
    40801 atcttgaaac tgaatgtaat tttctatagg taggatgtgg ttgctcggta caatgagtgt
    40861 acttaaaact gtttgagcgg caaaagcttg ataagccatt tgaagatttg ggttttgaat
    40921 tgtaatatta gtaataaaat tattttcaaa ggcagaagca tcaatacttt caacagtggc
    40981 tggtgtagtc actgttttta aattattcgc taaaaatgct tgggaaggaa tattttttaa
    41041 agcagtagaa taagttattt tttctaattt attgacacta aaagagttcc ttcctatagt
    41101 ctgcactgag ttgggtaaga ctagttgttc aagtgaattg atggtaaaag caccatcgcc
    41161 aatagttata actgtattag gaatcgttac attagttaat ctcttggatt tgaatgcgcc
    41221 attcccgata gcagtaacgg tatattcatt attaggacca agtgttgtag gaatggtaat
    41281 atcagtagac tgtcctgtat aatcagtaat ggtagcttca tttccattta ttgtatattc
    41341 atagtcacca gatgtttcgg cagaaccaat agttggaaat aaaaacaaga atatggcaaa
    41401 acaaaaaata ccccaaaatc ttctttgtaa cacagaaaag cccccttact tgagtttttt
    41461 tatattttcc cttacacaaa acatctaaac ttttctatat tcatatctgt gtggaataag
    41521 ttttttttaa ttgatacatg tctagcacta gcttatactt aaattaatac gacaacgaaa
    41581 aggaagagat atatgacaca actagtattt cgaaacggga cagaacaaga cacgacgtta
    41641 attcttcgtt ttattaccga acttgcaatt catgaaggca ttgaaaaaga tgtagtagca
    41701 accgaatccg gcctacacaa agcccttttt caagaaaaat ctgccgaagt aattatcgct
    41761 gaatacgaag gggagccagt tggtttcgca ctctttttcc ataacttttc cacattactt
    41821 ggcaaaaaag gcttatacct agaagacctt tacatcattc cagaaatgcg cggaaaaggc
    41881 tttggaacaa aatttttcag ctatttatcc aaactcgctt tatcacgcga ttgcggcaga
    41941 tttgaatggt ggtgcctaaa cgaaaataaa tcaggcatgg atttttacga aaaaattggc
    42001 gcagagaaaa tgtcagaatg gaccgtacat aggctcacta aagccgaaat gaaaaaaata
    42061 agcaacctat gaaaggatgg gatttaaatg aaatgggata aactattaaa tgataaacgc
    42121 cgccgcgaat ccggtgtcac tcgttcgaaa aacaccgacg tacgtagcgc tttcgaaaat
    42181 gattttcagc gtatcgttat gagtgcatcg tttcgccgtt tacaagataa aacccaagta
    42241 ttcccgctag aaaaaagtga ttttgtgcgt acacgactaa cccattcaat ggaagtaagt
    42301 acaatcgcaa aatcaatggg gaacatggtt acacacacga ttcaagaaga aaacttagac
    42361 aaagatttta caaaagatca tgcggataaa attccggaaa tccttgcttg tgcaggactt
    42421 ttacatgata tgggcaatcc gccgttcggt cactttggtg aagaaagtat ccgtgagtgg
    42481 ttccgcgaca atttagcaac catcacttac aaaaataaaa acctagctga aatcctaaca
    42541 ccgcaaatga aagaagactt ttattacttt gaaggtaacg cgcaagtgct tcgtgtagtt
    42601 tccaaactgc attatctttt cgaccaatac ggcttaaacc taacatttgc cactttaaat
    42661 gcggtcatca aatacccagt ttcttcctta aaagtaaata aaaaacaaat caaaagcaaa
    42721 aaactaggct atttttatgc cgatgaatca ctttttaatg aaataacaac agcaacagaa
    42781 gcgcttgata accgtcatcc gctcacttat ttactagaag tggcagacga catcgcgtac
    42841 ctaaatgccg acctagaaga cggcgtgaaa aaaggtatcg tcaacatcac gcaaatctta
    42901 aaaggttttg aagaagtaga agagcataat aaagtaactg ccgcgtgcta caacgaactt
    42961 aagaaaaaaa gcgagcgcta cgaagggcaa gaagaaagtt tcatcgtaca acaatggctc
    43021 gcatcgaacg tccgcggcca attaatcaat cgctcactcg aagtatttta cgagaactac
    43081 gacgccatca tggcaggcac attcaacgac tcacttatcg atgcttcaag cgccgaacaa
    43141 ctcgtacaaa ttttacaaag cctatcattc acgtacattt accaagataa aggcattgtt
    43201 gaatccgaaa tcgccggcaa cgaaatcatc tccaaattgc tcgaaacgtt catcccagct
    43261 gtgatttact acgacagcga aacaccagaa cgccaaacag ccaaagataa acgcctacta
    43321 accttgattt ccgacaacta cctaggctgt taccgcaaaa acgcagaagg cgaaagcgaa
    43381 acaatgaaac tgtacttgcg attacttctc gtaacagact tcatttgcgg catgaccgac
    43441 agctacgcga aagatttata tcaacgtttg aatggactta gctaattaac taaatttcaa
    43501 gtaacacctt gacatccgaa cgtcaaggtg ttactatatt caaggtgcct ctactataaa
    43561 cagaggtctg aaaataaaac agcgttgtag gttgaactta cagccatttt attttaccga
    43621 aaaaatgaac cacctggatg tgtggaacta ctaaacaagg aaggaggaat ttatcccatg
    43681 cctacaatta accaattagt acgcaaacct cgtcaatcta aaattaaaaa atctacatca
    43741 cctgctttga acaagggcct aaacagtttt aaaagagaac taacagacgt taactctccg
    43801 caaaaacgtg gcgtatgtac tcgtgttggt accatgactc ctaaaaaacc taactcggcg
    43861 cttcgtaaat atgcccgtgt acgtttgagt aatggtattg aagtaacagc ttacattcct
    43921 ggtattggtc acaacttaca agaacatagt gttgttctta ttcgtggtgg acgtgtaaaa
    43981 gatttaccag gggtacgtta tcatatcgtt cgtggagcgc ttgatacagc tggtgttgaa
    44041 aatagaggac aaagccgttc taaatacggt acgaaaaaac ctaaaaaata atacttataa
    44101 aatatgaaag gaggatatcc gatgcctcgt aaaggtcctg ttgctaaacg tgacgtgtta
    44161 ccagatccga tttataattc gaaactagta actcgtttaa ttaataaaat gatggttgac
    44221 ggaaaacgtg gaaagtctca agctatccta tattccgcat tcgatatcat tgcacaagaa
    44281 actggtaaag atccgatgga agtatttgaa caagctatga agaacattat gcctcttctt
    44341 gaagttaaag ctcgccgtgt aggtggtgct aactatcaag tacctatcga agtacgtgct
    44401 gaccgtcgtt ctactcttgg tcttcgttgg ttagtaaatt atgctcgcct tcgtggagag
    44461 aaaacaatgg aagtacgtgt tgctcgcgaa atcatggatg ctgccaataa tactggtgct
    44521 tctgttaaga aacgcgaaga tacacacaaa atggctgatg ctaacagagc gttcgctcac
    44581 tatcgttggt aaaaaaatca ctgacaaatt ccaggcgtat tgcctgaaaa attgttttat
    44641 ggaaggagaa atacaacatg gctagagagt tctccttaga aaagactcgt aatattggta
    44701 tcatggccca cattgatgcg ggtaaaacta ccactactga acgtatcctt ttctatacag
    44761 ggcgtattca caaaattggt gaaacccatg aaggtgcttc tcaaatggac tggatggagc
    44821 aagagcaaga acgtggtatt actatcactt ctgctgcgac aacagctcaa tggaaaggct
    44881 accgagtaaa cattatcgat acaccaggac acgtagactt cacagttgaa gttgaacgtt
    44941 cgcttcgtgt acttgatggt gctgttgcgg ttctagatgc acaatctggt gtagaaccac
    45001 aaacagaaac agtttggcgt caagctacta cttacggggt tcctcgtgta gtattcgtca
    45061 acaaaatgga caaaatcggc gcagacttcc tatattctgt aggtactttg catgaacgtt
    45121 tggctgccaa cgcgcaccca atccaactcc caatcggggc cgaagataca tttgaaggta
    45181 tcattgactt aatcgaaatg aacgcgttgt attacgaaga tgatttagga aatgaccctc
    45241 atattaaaga aattccagct gatctgaaag acttagcaga cgaataccgc ggtaaattag
    45301 tggaagcagt tgctgaactt gacgaagagc taatgatgaa atacctagaa ggcgaagaaa
    45361 ttacaaaaga agaacttaaa gctggtatcc gtaaaggaac acttaacgtt gagttctatc
    45421 ctgtagtttg tggtacagca ttcaaaaaca aaggtgttca accaatgtta gatgcagtac
    45481 ttgattacct tccagcacca acagatgttc cagctattaa cggcgtattg cctgatggag
    45541 aagaagctgc tcgtcacgct gatgattcag aaccattctc ttccctagca ttcaaagtta
    45601 tgactgaccc ttatgttgga cgcttaactt tcttccgtgt ttattccggt actttgaatt
    45661 ccggttcata tgtacaaaac tcgactaaag gtaaacgtga acgtgttgga cgtatccttc
    45721 aaatgcacgc taatcaccgt gaagagattt caatcgtata cgctggtgac atcgctgctg
    45781 ccgtaggact taaagataca actactgggg acactttatg tgatgaaaaa gaacaaatta
    45841 tcttagaatc catggaattc ccagaaccag ttatccaagt cgctatcgaa cctaaatcga
    45901 aagctgacca agataaaatg gggcaagctc ttgcgaaact agcggaagaa gatccaactt
    45961 tccgtgctga aactgaccaa gaaactggcc aaactcttat ctccggtatg ggtgaacttc
    46021 accttgacat ccttgttgac cgtatgagac gtgaattccg cgttgaagct aacgttggtg
    46081 atccacaagt ttcttatcgt gaaacattcc gtaaatctgc tcaagttgaa ggtaaattcg
    46141 tacgtcaatc cggtggacgt ggacaatatg gtcacgtttg gattgaattc ggaccaaacg
    46201 aagaaggtaa aggatttgaa tttgaaaatg caatcgttgg tggggttgtt ccacgtgaat
    46261 acatcccagc tgtacaagca ggtcttgaag gcgcactaga taatggtgta cttgcaggct
    46321 acccactgat tgacatcaaa gcaaaacttt acgacggatc ttaccatgac gtcgattcca
    46381 atgaaatggc cttcaaagtg gctgcttcaa tggcattacg taatgctgct aagaaatgtg
    46441 atcctgtaat ccttgagcct atgatggctg tagaggttgt tatcccagaa gaataccttg
    46501 gtgatatcat gggtaacatt acttcccgtc gtggtcgtgt agatggtatg gaagctcgcg
    46561 gtaacgctca agttgttcgc gcatttgtac cacttgcaaa catgtttggt tatgcaactc
    46621 accttcgttc aggtacgcaa ggtcgtggtg tatacactat gcaatttgac cactatgaag
    46681 aagttcctaa atctattgct gaagaaatca ttaaagctaa tggtggaaac aacaaagaag
    46741 attaattgat ttttttcgca acatcaagta taactttagt tagaagtatt acttagttta
    46801 aatttaagct aagtaaaaaa taattatcga attatcgagg aggatatttt aaaatggcaa
    46861 aagaaaaatt tgaccgctct aaaccccatg ttaacattgg tactattgga cacgttgacc
    46921 atggtaaaac aactttaact gctgcaatta caactgtact tgctaaaaaa ggctatgctg
    46981 atgcacaagc ttatgaccaa attgatggtg ctccggaaga aagagaacgt ggtatcacaa
    47041 tctctactgc tcacgttgag taccaaactg acagccgtca ctatgcacac gttgactgcc
    47101 caggacatgc cgattacgtt aaaaacatga tcactggtgc tgcacaaatg gacggagcta
    47161 tcttagtagt atctgctgct gatggcccaa tgccacaaac tcgtgaacat atcttacttt
    47221 cacgtcaagt tggtgttcca tacatcgttg tattcatgaa caaatgtgac atggttgacg
    47281 atgaagagtt actagaatta gttgaaatgg aaattcgtga tctattaact gaatatgaat
    47341 tccctggcga tgacattcct gtaatcaaag gttcagctct taaagcactt caaggtgaag
    47401 ctgactggga agctaaaatt gacgagttaa tggaagctgt agattcttac attccaactc
    47461 cagaacgtga tactgacaaa ccattcatga tgccagttga ggatgtattc tcaatcactg
    47521 gtcgtggaac agttgcaact ggacgtgttg aacgtggaca agttaaagtt ggtgacgaag
    47581 tagaagttat cggtattgaa gaagaaagca aaaaagtagt agtaactgga gtagaaatgt
    47641 tccgtaaatt actagactac gctgaagctg gcgacaacat tggcgcactt ctacgtggtg
    47701 ttgctcgtga agatatccaa cgtggtcaag tattagctaa accaggttcg attactccac
    47761 acactaactt caaagctgaa acttatgttt taactaaaga agaaggtgga cgtcacactc
    47821 cattcttcaa caactaccgc ccacaattct atttccgtac tactgacgta actggtattg
    47881 ttacacttcc agaaggtact gaaatggtaa tgcctggtga taacattgag cttgcagttg
    47941 aactaattgc accaatcgct atcgaagacg gtactaaatt ctctatccgt gaaggcggac
    48001 gtacagtagg cgctggcgtt gtttctaaca tcagcaaata atacctgata cgattcaaac
    48061 cgacaaagtc atttggcttt gtcggttttt ttgtgcctga aataaaaatt aacttgaaaa
    48121 atatcacatt ttcgcataac cttaaagtag acatatcttt ttaccttcta gaccgaaatc
    48181 aaggaggtag gccaagtggt acaatttgat gctcgaaata tggcgttgct cgaatcactc
    48241 gttgtggcga atgtatatct tgcacccgag aaattacaag aagaactagg aatttccaaa
    48301 cgaacacttc aatatgatgt ggaaaaaatt aataaagaat tagataatat aggactcgat
    48361 ggtattcaat ctgttcgtgg acaagggtat tatttattag aagatgaaaa atcgacaatt
    48421 aaagaaatcc ttggaaatag ggaagcgagc cacaaagtct tttcagcaag tgagcgtcgc
    48481 atccgtattt tattttttct gctcgtaaca gatgcgcgag taatcattga tacgattaat
    48541 gaatgcaatg aagtcagtcg taatacaagt ttgcaggaca ttaaacaatt aaaattagcg
    48601 ctaaaacagt ttaatttaga acttgcgtat gaccgtaaaa atggcaatat ggttctcggt
    48661 gatgagcgca gtattcgcca attttttatt cactattgta tgaataacga agaaatcgca
    48721 accgcagacc agttgctcga tttaatgaaa attaatccga tgataaaaaa tcaggagtta
    48781 tttcccaaat tagatacgat tttcgaaatt ttagcagtaa cggagaaaaa aatcggaatt
    48841 cgttatactg acgaggtcct tgagcgcatt ggtattatga ttttcttctt taaagaacga
    48901 atgaagcgta attgctattt aaatgaacaa gaagagcatg aagtagaatc ttttgagatt
    48961 gcgcaggaaa tttatcagca attgcagcaa agtgagaatt ttaaaatcaa tcatgcggaa
    49021 atcacttatt taggtaaact tttgcttggg gcgagtcgtt tgaatgatga tgcggctgct
    49081 gaaggaaaat tagatctcat cgttgaaaaa atcatcgccg aatttgaacg tcttgcttgc
    49141 gtgaattttg aagaccatcg caatttgaaa aaagatttat tgcttcattt acaaccagcc
    49201 tactatcggc ttaaattcca aattgagtgg attaacccgc taaggacaga cattaaacaa
    49261 agttacagtg atgtgtacga gattacgaaa aaatcacttg aaccgctaga agatttactt
    49321 ggtgaaacaa ttccagagga tgaaatagcg tacgtaacaa tcttgttcgg tggctatctt
    49381 tcacgcaaaa ataatacttt agttgaacga aaaaaactct taatcgtttg ctccaaaggt
    49441 gtcggaacgt cgcggatgat tgaacggcaa ttatcgcaat tacttggtga gcgagtagag
    49501 atattagaac caatttccat ccgtgaattt gaaaaagggt tatacgcacc agactttatt
    49561 gtgtcgactt tgccaattat ggaaccaaaa gcaccagttt ttatcgttag tccaattttg
    49621 acagaagcgc agaaacaaca actgatgaag gcgattgccc cgcacatttt gcaaaaggac
    49681 tcggatgcgc gcatgttgtc ttctgtgctt gatgtagtag atcaatatgc caaagtggaa
    49741 gaccgcgaga aattggcggc aaaactgaaa tcggtattgt tccaagtgca atcagacagc
    49801 caactagaaa aatctccaac actcgaagaa cttttaccga aagaacgaat tacttttaaa
    49861 gaaagtgtgg cggactggcg tgaggctatc ctagttgcct cgaaatcgct gcaacaagaa
    49921 ggctacattt cgagaaatta tcagcatgcg atgattgaaa atattgagaa actcggacca
    49981 tacatcgtta ttgcgccagg gattgcactg ccacatgcgt ctgtggatga cggggcatac
    50041 cgagtcggaa tgagcttact gcgcttaaat cagccagtat cattttcaag taaagcgaaa
    50101 gatcaagtga agttaattat tgtgctcgct tccattgact cctacacaca tattaatgcg
    50161 ctgagccaac tcactaattt aatcatgaaa catcacttgc tagagcagat tgaacaagcg
    50221 acatcagcag cggaaattgc cgcaatgtta acgatacaat aagcaagaaa gccagtgggg
    50281 caccaagatg ccgcgctggc tttttgtatg ctcgctaaca acaaaatgta acagtctatt
    50341 ttttgcactt tcgaaaagaa aggaattggg cttttttaaa cagttgcgct acagctataa
    50401 taagagtgta agttattgat agcgctatca attagttaga agggatgaag agatatgtct
    50461 tttttggata aagagcttgt gaatctgcat ggatcagcta agaatgctga cgaagctatc
    50521 gtgcaagcag gagaattatt agttaatgca ggttatgtga gcgagcagta cgtagaaaaa
    50581 atggtggaat cttatcatga aaatggtgcg tactttgtca ttgcacctca aatagccatt
    50641 ccgcacgcaa gaccaactga tggtgtggaa aactctgcag tatcactagt cgtactaaaa
    50701 gaaggcgtga atttcggaca cgccgcgaat gatcccgtac gattagtatt cggtcttgca
    50761 gcaacttcaa gtgaggcaca tttgaaagtc attcaaaaaa tcgtctcctt gcttagtaac
    50821 aacgataata ttgaaaaatt gattcattca gaagattacc aagcaattgg agaattagtg
    50881 gagggataac gatgaaaatt ttagcagtat gtggacttgg gcaaggaaca agcttaattt
    50941 tacgaatgaa tgtagagaca gttttacgcg acatgggagt agatgcagac gtggagcaca
    51001 ttgatgtatc agctgcgcgc tcgatgaatg tggatattat tgtaacgagc caagagttag
    51061 cagaaacact tggaacagat acaagcgcca aagtagtcat cgtcaacaac tattttgaca
    51121 acgcagaaat taaaacggca ttatctgaag caattaatag ttaaataaga caaaaaaagg
    51181 tgggaaaaaa atggagatta ttacgtggat tgccaataac ttttttggaa ccccagccat
    51241 acttttaggt tttatcgtac ttctcgggtt acttttacag aagaaaaatt taagccaagt
    51301 gattagcgga acgttcaaag ccattattgg attcttaatt attaacgctg gtgcggctgt
    51361 tattactggt tcccttggga tttttgaacc aatgtggaaa gaagtattcg gacttgaaac
    51421 accgccactt gcaggctttt taggacaaga agcctttaat gcaaaatttg gtagtgcggt
    51481 aacacttgcg atgacactcg gatttttagt caacgtatta ttagcacgat ttacaccatt
    51541 taagtacatt tatttaactg gtcatatgat gttctggaca acgacgattt ttgcaggaat
    51601 cactgtgcaa gctgtcggcg gggatattcc gttctggggt cttgtactct tcttagcagt
    51661 aattatgggt ctttactgga cattacaacc agcgattaca caaccattct tacgtaaaat
    51721 tactggaaat gacaacgtcg cgttaggaca tacttcatcc agtgtagcga ttctatccgc
    51781 tttgctaggg aaagtatttg ggaataagaa aaacgatgca gaacatatta atttaccgaa
    51841 aaaattagag ttcctacgtg actctaacgt tattacagct cttacaatgg ggattctgtt
    51901 cgtagttggt gcagtgattc tgatggtgaa gaaaacaccg ggagcagaaa aattaatcgc
    51961 agaagctgga aatcaaagct tcatcgtata ctccatcgtt cagtccttta cgtttgccgc
    52021 tggtatcgcc atcgttcttg taggtgtgcg gatgtttatc ggtgaaatcg taccggcctt
    52081 caatggtatt gcaacaaaac ttgtaccggg tgcgaaacct gcactagatg cgccaatcgt
    52141 ttatccatat gcaccaaact ccgtaattat cggtttcgta ggtgcgttca ttggagcgat
    52201 tatctggtta gtagtacttg gaaatacagt tggctacgtg tttgtgccaa caatgatcgt
    52261 tcttttcttc cacggggcag ttgctggtgt attcggtaac tcaactggtg gggtgagagg
    52321 agccttgata ggtggatttt taacggctac ggttgttgct tggggacaat atattatggt
    52381 taccttcttt atcaatacga ctgttccaga tacagcaatg tgggcagccg actcagatat
    52441 gtttatcctc ggaccaattg tcagcatgtt agcgaagtta ttcttttaag taaaatctaa
    52501 acctcttcct tgtctagcat tcaagaggaa gaggtttttt gaaaggaagt tttaaaaaat
    52561 gagttttatt cgtacttttt atggagatat tgcccctgaa caactgggct tcacttattc
    52621 acacgagcac atcgtttgtg taccagctta ctggcaagag cgagatgccg atgatttact
    52681 tttggatgat aaagaaaaat cacaacttga tgtacaagat ttcgccgatt taggaggcaa
    52741 aacaattgtc gatgcaaccg cggttgatta cggcagacgt gtgctcgatg tggcgcaaat
    52801 ttccaaagaa acaggcatcc aaatcgttgg aacagctggc tttaacaaaa gtttcttatg
    52861 ggacgggaag attaaaccag aactgaaacc aatcatcggg gattttgaaa cctactatga
    52921 atggattgaa aatactacta cagacaaact aacggaattc gttgtaaatg aagtcgaaaa
    52981 tgggcttgaa ggaacgccgt ataaggctgg tcaggtgaaa tttggcactg gctacaatat
    53041 gattacacct ttagaagaaa agacaatacg tgcggttgca agagcacatc acgagacaaa
    53101 agcaccaatt cattctcaca cagaagcggg aacgatggct ttagaacaaa tcgagatttt
    53161 aaaacaagaa aatatcccgt tagaatacct ttctattggt catatggacc gcaacctaga
    53221 tccgtattat cacaagcaag ttgccaaaac aggcgcattc atgtcatttg atggcatcgc
    53281 aaaaatcaaa tacgcaccag aaagcgctcg gattgcagcg attctatatc tagtttcgga
    53341 aggctttgaa gatcaaattt tagttagtgg tgatacagca cgcaaaactt attataaaca
    53401 ttatggtcac ggaccaggac ttgaatatat cgccaaaaaa tgggtgccac gctttattga
    53461 tgaagcaaac gaaaaaggct ttgacggaga aaaattagtt aaaaaattct tcgtggataa
    53521 cccagcaaga tgttttactt ttaaaaaata ggaggcgaaa tctgtgttat atgcagatga
    53581 aaattcattt gatattggcg cgaaaatcac gaaaacaaaa ccagtccttt tgccaatagg
    53641 agcagtcgaa gcgcatgggc cgcatttgcc actagggaca gacaatattt tagcgtcaga
    53701 atattcagcg aaaatagcgg cggaaacgag cggattcgtg cttccggttt tgccatacgg
    53761 ccaagtttgg agtttgcaag atttccctgg aagtttaaca ctatcaaatg aaacggtaac
    53821 gaaagtagtt gtagagattg gtgaaagtct atataaacaa ggattccgtc tgtttgtccc
    53881 agtgagtgga catcttggca atatggctgc gctaaaagat gcagcgcgcg aactatatgc
    53941 aaaatatcct gatatggtta tcttgcacat tttttacccg aatatccaaa aattagcaat
    54001 ggacgtgcgc gaaggaaacg ctaaccatca tacgtatatt catgcctgtg aaatcgaaac
    54061 atctctcatg ctctacttgt ccccagaaaa tgccgatatg agccgcgcca tagatgatcc
    54121 gccaatttta ccaatcgatg cggatttcac cccaacaccg tggcaaaact tcacgaagac
    54181 agcggttctg ggagaagcaa ctttggcaac agcagaaaaa ggcgaatact tgattgaaaa
    54241 gacgttaaaa acatgtgtgg agttgataaa acttgaacaa gaaaaaattc gaaaatctac
    54301 cgaaatggaa taattttgcg ctatttaatt ttttagcgaa agataaggaa aatagcctgg
    54361 aagtcatgga ggcggcgcgc ggttttgccg ttccgggaat cgttgcaacg aactacgaaa
    54421 cagcagaaga agccgcaaat gtggtgaaag aattacaaac aacagccccc gtcattagtg
    54481 ttggtcttgg tggcggtgga gactggcaaa actggcgtga tgtgcttcat attgctcgtc
    54541 tggctccgaa cagtcatatt aaccagccaa tcgaaaccgc gggattaaca aatgacttac
    54601 ttccggaaac atacactaat gcacttgttc gtccaaccgg gaaaatcggc atcgtcaaac
    54661 tatcttccgg agacgaaatt accgctgaag aagctgtcga ttattgtcta tccgccaaca
    54721 tcccgtccat caaatttatg agcattgaag gcacgaaata tttagatgaa ctagtttact
    54781 taacaaaaat tgcggccgat aaaggcattt acggtattga gccagcggga ggaattggag
    54841 ctgacaatat tcttgaaata acaaccgcca tcaagtccac cggaattccc ttttatatgc
    54901 cgcatatttt tggaaaaaca attgacaaag caactggccg aacgaaaccg gaagaaatcg
    54961 agaaaatttt tgcagctttg gaggggaatt aaatgattaa taactatatc gatattacag
    55021 ttcgtttatt agaaaacatt ctcgataatg aagctgatta tgtaaaagaa gcaggagcga
    55081 aggtagccga atctattgaa aacgacgggg taatccattt atttggttgc ggtcactcgc
    55141 atattttaac agaggaagta ttttaccgcg caggtggact ggctgcgatt catccgattt
    55201 tgcatgaacc acttatgctt cacgaaggag ctgcggcgtc atctgtactg gaacgaaaaa
    55261 atgattatgc gaaaacattt atggcagagg aagatatccg tcctggcgat atcatgattg
    55321 tgctatcgac gtccggacga aaccctgtac caattgatgt tgctgaaatt gcccgtgaaa
    55381 aaggtgcatt tgtcatcgtc attacttcgc tccaatactc cgctagccaa aaatcccgcc
    55441 acacatccgg aaaacgttta tctgatacag gggacattgt aattgataac ggtgctgtca
    55501 aaggtgatgc cgtcctaaaa tcggcaaact tcgatatcgc atttgcccca acatcgacgg
    55561 taacgggcgc agtcatcttg caatctattt ttgcagaagc aatcgaaaca atggtaaacg
    55621 acaacttcac accgccagta tttattagtg gaaatgtcga aaatgccgat gcacataatc
    55681 aagcacttgt tgataaatat aatgagcgaa ttccgcttct tggaatgaat ttataagaaa
    55741 gaaaagtcta ggttagcacc tagacttttt tactatgtta gagtatttct atagattgcg
    55801 atataattaa actatataaa aatgataaag gagtgcggcc gatggattca gcatatgttt
    55861 ttgatagcga acaagcaacg aaattattaa tgaagaacta tgaattagta aaaacgagtg
    55921 gcgttagttt tattgataaa cgaattcgat ttctaattgc tcgtcttttt gcggggaata
    55981 atgaagtggt taatccagag gaatttagtg aaataaataa agaaattaaa cgacaactag
    56041 gcatgttcac tgcactaaac ggaaatgttc gcgcatcctt ggtaggattg ctcatggcga
    56101 acgataatgc cagccgagag agcgtccagc aagtaattgc taattataat acattgatcc
    56161 aagcgggatt ccagcgcaca gaatacactt attttgcagc atatttatta ctagaatcag
    56221 aaaatcccaa aaagacagcc caaaaagcga aaactattca ccaacttttc aaaaaagacc
    56281 atccattttt aactaaaagt gaagatgtga caacagctgt tttcttagca aatcttcctg
    56341 aagaaaatac cacgaaattg gctgaaataa cagagtacta ttttcaagag ttcgccgcga
    56401 aaggtttccg caaaaatgat agcttacaat ttttagcaac aacagggaca cttttgtacg
    56461 gtgaaaaaga tagcaaattc attcgaagag tagataatat tgtagaagaa ctacgacaaa
    56521 aagggataaa agtaaaaccg ctacattact caagtattgg gattttagct tttgtcatgg
    56581 acgcgcgaaa aatcgattca gggttagtga acttaattga tgaattacag caacaaccag
    56641 gcttgcgttt cggacgagaa ttcgttacag ctctagcaat aagcctatat acggaaaaac
    56701 aatcaggtca aatgagtaag gaacaattag aagggttaat ggtcaatgtg catatattga
    56761 ttgcaatgga acaagcagct gcggtgagtg cagctgcagc agcgagtgcg gcagccgcat
    56821 ctagttaata caaaaaaact ggtaagccat aacggctacc agttttttta tgatttaagg
    56881 actaacataa tagtcattac ttttcttagg cggattggat gaacttaaaa cgtaatcttt
    56941 caaaaatgaa ttcggtgcag aatcccataa agccatacca tcagattttg gaggggcagt
    57001 tccggcgaag aaatacatgt tatttaatcc catcgtatct gccatttttt ccttatccgc
    57061 ttggttgtac ttatcataag attcatcggt cattaaatcc atcattgcct tatcgtagcc
    57121 actattataa aaagtttcgt aatcaaattg attaaaatta agcaagtttt catccgtaga
    57181 gccttgcgct tttgcccaag cttccatatc taacttttga gattgatacg tgaagttttt
    57241 gtttttggca ctataagtaa tattgccata tttatgcggg aaaacagaaa gagcattggt
    57301 tacgatatcg gtaatttctt tgccatctgt gcttttcgca gagcggatat tttgcgtatg
    57361 aatatggcca cttagagaaa aatccataga gccttccgta agcgcatcaa ttacttgttg
    57421 attataatta atagtataac ctttttgaat aacatcatta tgatcagtta aattatgatg
    57481 caaaacaggg acaagtttag cgccgttttt ctttgcaagc gcactgcttt cttttatcca
    57541 atctagtgtt ccagctgtta gtccaccttc tgttgtcgga gttccttgct gcatatttgt
    57601 tttataaata gccgtgtcta acattaacag ccatactttg gaagaaggag ctgctaaata
    57661 actcagcgaa aactcatcac ttgaaatagc atctttatat ccaaaatcac cataaatttt
    57721 actgaaatca gttggtgata tagtgtcggt tggtaactgc ttatcttttt caaatttgcg
    57781 ggcccaaggg ttgttaatgt catgattacc cggaacaaca aaaacctgcg tcccagtttt
    57841 ctctacttga gtaagttttt tggctaactc ttcatgactt gttttttcac cgttgttcgt
    57901 aaggtcgcca ctaataataa ggacgtctgt ttttttagcc tctacatccg ccaaaaaagc
    57961 atcggttatt tcatcgctat aagctaactg tttcccatca cccgcagcca catatttttc
    58021 aaaggctttt ccgttgtcgg ttagtgatgg cgcaaagtaa tgaacatccg tcgttacgac
    58081 catcgataaa ttacggtctt tctcaattgg cgcagtaatg ttctctgttt ttccacttgc
    58141 ggaactacaa gcaactaaag agatagatag gagtatcggt gtaactattt taaaaaatcg
    58201 aatcacgtta atcacgcttt catgtttgta ttttcacaat aagttccaaa atttagaaca
    58261 aaactcaata tggaaggagc aatgttctaa acggtttaga tatctcgatc taaaatattt
    58321 ttcgtcaagc ggtacatatc atcacgatac gcgccagctg gtagtttttt gatttcacga
    58381 agcgctttat tcgtatattt gttggcaagt ttgaatgcct gttcgacacc tttatactta
    58441 gaaataagtg ctaaaacttg ttcggaagct tcatccgtca tatctagttt ttgagaaaga
    58501 agtggctcga attcagccaa gtgacctttc attgcataaa taagtggcag agaataaata
    58561 ccttgtttca tatcatttaa aacgggtttg ccaagacctt catccgtact tgtgtaatcc
    58621 agtacgtcgt caataatttg gaaagccatg ccaaggtaat gtccgatgtt ataacatttt
    58681 gcaactgtca tgcgtgttgc tttactgcca gttgcgccag agtaacaact aagtgcaaat
    58741 aattgtgctg ttttaccaga aatacgcgtt aaatattcac gaacagttac attcattttg
    58801 tagcttgtgc gcatttggtc tagttcgccc attaagattt tttcgatatt tttactatta
    58861 aattcaatgt tctccacgga agaagcatgt gcggataaaa ttttgaaaca gatgcagaat
    58921 aaataatcgc ctgtataaac agcataatta cgaccatatt tagaatgaat tgtcgggatc
    58981 ccgcggcgta acggagaatc atcaacgaca tcatcatgaa tcaacgtcgc catatgaagt
    59041 acttcaagcg cagcagcaat cgaaacagca cgttctttat cataatcagg accagcttgc
    59101 gcagaaagaa gcgcaaaagc agggcgcagt aatttcccac cagcgtgaat caaatctttc
    59161 acgttttgct caacgtgttt atcgcgaatt tgaatatttt tttcaatcgt ttgtaagact
    59221 tcttgtaaat ctttggaaag tgcaggatac tcatcccaca tagcatgaag ttgcatattg
    59281 aactcctttt tttaaagtta tttttgtgct gcttgacttt gtttagcatc agcgaacatc
    59341 cgcaaagttt ggacgttttt cagtaggtaa tttgctgcaa tcccaaccgc gatcccagaa
    59401 agaatgccga tgaaagataa tactggcaaa taaagcataa cggaccaagt accagcaatc
    59461 caactagcaa ttacgagctg accaacgtta tgtaaaatcc caccagtaac actaacgcca
    59521 atgatgctca cgcgtttcgg cccaagttgt tgtacgagcc acatcccaag aaaacttaag
    59581 atagctccgg ccgcgctata cataaaggtc gaaattgtcc caccaagcaa agtggataaa
    59641 actaaccgaa tgcagataat cataaaagta tcttttgccg ataatgtata aagcgaaata
    59701 cacgtaataa tattagcaag acctagtttc gccccaggag caaacgcaaa tggaaacgga
    59761 atagcccgct cgagtaaact aatgacaacc gcttgagcag ccagaagtgc aatatatact
    59821 aatcgtctgt tttttgtcat agaaacactt tcctatctat tggaggataa ggtcaggaag
    59881 agataatcgg atcatctgaa tcgcctgaac tcccgtcact cgcttttact tcaattacta
    59941 acttatgtgg aagacaaaca actgtatcgc cttgtttatc aattgctcca gtccgaacac
    60001 atacttgatc gttacagttc gctttactaa ttcggatttc ttcccccgaa acctcaatcg
    60061 tgttagtatg tccatctggt tgtttcacat caaagctttc cgtccctttg tgcccagtga
    60121 gcgtaacagt tttatattct ttactatcaa cagaaataac tgcaacaagc tctttttttc
    60181 cgttagcagg agccggttca ttcgctttta catatgaaaa aatagcaatc ggcaaaaagg
    60241 agagtataca aagagataat ataataataa tatcccaacg cttcaccata gaaagatact
    60301 tcttcaccgt attgcctcct ttcaaaatgt catgtacaaa tcctatttta aaggataatg
    60361 cctaaatata ataggaaaaa gttcaagaaa tcaacaaata ataaaaacgg aagcacctcc
    60421 tatgccaaaa ctggcttttg gatgcactcc cgagttttta tttaaaattt taactaacta
    60481 aattacttgt ctctgtaaac ggatcttggc ttaccgtacc accaatgacc aagatgtttt
    60541 tggaaccaag gaacagccca ataatcaaga ccaaatgtgc gtccagcgcc atttagaagt
    60601 gcgatagaag ctggtaacgc ccagaatttg tcccaaccaa gcatagcgct tagtgtaaac
    60661 attactagga atccggcact tccgatactt acaagccaag tgaatagacc taccaccata
    60721 gcaagaccga ttgcaagttc aacaaaaggt acaacttttt gcattactag agcaacatca
    60781 aggtttggca ttagaagttc cataatccac tggaaccaac caggcatatg actaagaatt
    60841 ggagtagtta catttgttgc agcagcccca gcagcatcac cggcagcttg actagcacca
    60901 gatgtagcag cagtttgtaa ccattcgaat ggcattttag aggtagttgc agttaaccaa
    60961 gaatcagaac cgataccgtt aaataaaggt tttaaatttg taatacttac tttatcccat
    61021 gtagtttcac cgtagatttt agaaagagct tcgtcaatcc agaaccaacc aagatataca
    61081 cgtaaaggaa gaacccaaag tacgttacca taacgagaag tccaaccacg gaaaatgttg
    61141 cggtgatctt taatgtggaa gaattcatgc ataatatatt gccacatgta ataaccactg
    61201 cgaataccga agaagtaata caagttaacc atatgcttca ttaaaatagc gaaccaacca
    61261 gataagtgca taccaccaag gtgagcaaca ccgtatttag ctccgataga aaccattaca
    61321 ccatgatatt taccttggaa tggttctttc tcgccagtac cgctcatttc cacgataatg
    61381 cttttcgctg cagttaatgc agtttgttca gcaccttcaa cgatttgcgg agttggttta
    61441 ccttcttcat cttcaaagta agcaaggtca ccaacgacat aaacgtcttt aagaccttct
    61501 gcttccatat attggtttac tttcaaacgg cctgcacgag cagattccat accgtaatct
    61561 tttgtatcag agttagcgcg aacaccagca gtccaaatta atgtacttgt tggaagctct
    61621 tcgccagatt taagtacgat gctttcaggt ttaacttcaa cgatagcagc gtttttcatg
    61681 atttcaatac cttttttaac catgtaacgt tcagctttgt cagcgtctct tctttcaagc
    61741 atgtttagga ttgttggagc agcttctact acaactagtt taatttcaga tgcgtcaatt
    61801 ttgttatctt tagcaagacg atctttccat tctaaaagtt ccccaaccat ttcgatacca
    61861 gtaaatccag atccacaaac aacgaatgtt aacattgctt tacgtttttc aacgtcttgt
    61921 tcgcgagatg ctttcgttac agtttcttca atatgattgc gtaacttaac agaatcttcc
    61981 caagaccaaa gtgtaaagcc attttcgcca acaccaggag ttccgaaatc attaggttct
    62041 ccgcccatac caagtactag gtaatcaaac ggataactac cgtgctctgt tgttacaact
    62101 tttttatcat gatctacatg tgtcacgtta tcagttacaa gattaacttt tgttctatta
    62161 aacaaacgac gtaaatcata ttgaattgca gttggttcaa cacgaccacc agcaacctca
    62221 tgtagttcag tcatcattgt atggtacgaa tgac
//
LOCUS       DASEAA010000002        58566 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.002, whole genome shotgun sequence.
ACCESSION   DASEAA010000002 DASEAA010000000
VERSION     DASEAA010000002.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 58566)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 58566)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..58566
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.002"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(51..1709)
                     /locus_tag="U0342_000061"
     CDS             complement(51..1709)
                     /locus_tag="U0342_000061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="poly(glycerol-phosphate)
                     alpha-glucosyltransferase"
                     /protein_id="HEM2421443.1"
                     /translation="MPWRGILDELENKIIDQLTEDEEHATYNGKWHGFLTIGYKNKRA
                     IVINFSYLCLANLINEMKKSAIKNQTEEAISFKIDVAVDYRLENLGEWNKKALKTKKN
                     YYRRGIALNENFKIALMEQEINANAILLPGDEGLAINVENMNRYLIQTNKNQAQLNLT
                     VDSTIVTFNTVGWFFDGKKIHELEPSELEHGRRSTKQLTPDAVFELVGNAGNYLVSQV
                     NQTGEFNYGWFACFDKKIKHYNSLRHASTTYSMLEAYELTGDKTILEAATSTLTYLEQ
                     NFIYEKDELAFLIEPGLREVKLGGSAATLLALTKYMKITGTKTYLPLSRKIANAIISL
                     QEENGKFTHVLEYPSLEVKDIFRIIYYDGEAVFGLLRLYEIDRDSKWLEAAAKSFDHF
                     IRDDYWQNHDHWLSYCANEITKYIPDEAYYEFGMKNAFDNLPFIYGRETTFPTFLELT
                     VATKEMSLRMETEDLQKLLHDYPLAELEKTITKRAIYQLNGYFYPELAIYYKNPARID
                     GSFFIRHQSFRVRIDDVEHNISGYVRYHHLLKQGKLSAEAETVK"
     gene            complement(1783..4344)
                     /locus_tag="U0342_000062"
     CDS             complement(1783..4344)
                     /locus_tag="U0342_000062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2421444.1"
                     /translation="MKKQRVDYKRRLDQKRAQKAKLIAALITTTTMMVAPVTVNYDSF
                     NHQFALSGIQADAATIDLLGNSNLNTQYSNGKLVITLSGNQLVSASAVSTYYPYFELP
                     SELSSILSNPNIRANTKIDYKIAYLGIGGIGLFNQGTVNGSNSSNFFIDSSRNAVGAK
                     VNHLLGVGVGSISTFTLTIDLLALGVTALPSANDGKLDFAARTGDGLLDVDLLNSNAA
                     RGFITTDVGDADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADADADADADADADAD
                     ADADADADADADADADADADADADADADADADADADADADADADVDIDWRDFLVEKPT
                     VNPIYEGTKTISGTSIYKNMNINTLLKSLQSDAPAGTTFYINLTLPDGTVIGNVLIHA
                     DGTYTINIPNYNLKAGDVIHLQVTAKYGNEVKTSEDVAVTVLPLADSDADADADADAD
                     ADADADADADADADADADADADADADADADGGSNPSTNGGTTGTSNGGTGVTVTNMSS
                     NGSGTMLSSGYSADGTTSISASDLPSTGDTNSSLPWVGLGLFSLAGAFLLRLFRK"
     gene            complement(4824..5720)
                     /gene="lipA"
                     /locus_tag="U0342_000063"
     CDS             complement(4824..5720)
                     /gene="lipA"
                     /locus_tag="U0342_000063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine/lipid phosphatase LipA"
                     /protein_id="HEM2421445.1"
                     /translation="MKHWVKVTGAGVLSATLLLGGCGAQSEEKAEANVKTEQTVKPGS
                     QIKLEGAVNVRDLGGYKTTDGLTIKPHKLIRSAELANLSDSDKKKLVNTYDLSHIVDF
                     RTSSEVAAKPDPKLTDVDYTHDSVMKDNGASTSTQDLTASLAKMDNPETFLINANKSF
                     ITDETSIQAYKDFFDILLANQDGSVLWHCTAGKDRAGFGTALVLSALGVDKNTVINDY
                     MLSNKYRALENKKAIEAVAAKTDNKKVIDGMTAVMEVRESYINAAFDEIDAKYGSMDN
                     FLKEKLGLTDAKKEQLKKAYLY"
     gene            complement(5863..7215)
                     /gene="ffh"
                     /locus_tag="U0342_000064"
     CDS             complement(5863..7215)
                     /gene="ffh"
                     /locus_tag="U0342_000064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle protein"
                     /protein_id="HEM2421446.1"
                     /translation="MAFEGLAGRLQETMNKIRGKGKVNEADVKEMMREVRLALLEADV
                     NFKVVKQFIKTVSERAVGADVMKSLTPGQQVIKIVQEELTSLMGGEESKIGTADRPPT
                     VIMMVGLQGAGKTTTSGKLANLLRKKYNRKPLLVAADIYRPAAIKQLETLGKQLDMPV
                     FSLGDQVSPVEIAKQAIAKAKEEHLDYVIIDTAGRLHIDETLMDELKQVKEIATPTEI
                     LLVVDSMTGQDAVNVAQSFNEQLEITGVVLTKLDGDTRGGAALSIRSVTGKPIKFIAT
                     GEKMEALETFHPDRMASRILGMGDVLSLIEKAQTDVDTEKMKAMEQKMKDNSMTLDDF
                     LEQLQQVKQMGPLDELLKMMPEANKMKGLDNMNVDDKQLGHIEAIIKSMTKNEKDNPD
                     IINASRRKRIARGSGRPVQEINRLLKQFGEMKKMMKQMTGGGKGKKGKNPFGNFKMPF
                     "
     gene            complement(7228..7560)
                     /locus_tag="U0342_000065"
     CDS             complement(7228..7560)
                     /locus_tag="U0342_000065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative DNA-binding protein"
                     /protein_id="HEM2421447.1"
                     /translation="MFEKTNRMNLLFDFYQELLTTKQKAYVSFYYLDDYSLGEIAEEF
                     EVSRQAIYDNIKRTEESLEKYEEKLGMLKKYQQREKLFSQLEAQLTKKNFLDEQVKDT
                     LEQLKNID"
     gene            complement(7673..8659)
                     /gene="ftsY"
                     /locus_tag="U0342_000066"
     CDS             complement(7673..8659)
                     /gene="ftsY"
                     /locus_tag="U0342_000066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal recognition particle-docking protein
                     FtsY"
                     /protein_id="HEM2421448.1"
                     /translation="MTFFKKLKDKITQQTDSVSGKFKDGLSKTRGNFSGKINEMVARY
                     RKVDEDFFEELEEILIGADVGFETVMELVDTLRREVQLRNISDPKDVQEVIVEKLVEI
                     YQGDEKEDEALHIEEDGLTVILFVGVNGVGKTTSIGKMAHRFKQEGKKVMLAAGDTFR
                     AGAIDQLEVWGERTGVDVIKQAEGSDPAAVMFDAVQAAKARKADVLLCDTAGRLQNKV
                     NLMNELEKVKRVITREIPNAPHEVLLVLDATTGQNAFVQAKQFKETTDVTGIILTKLD
                     GTAKGGIVIAIRNELDIPVKFVGLGEQMDDLQAFDANEYVYGLFADMVDNEK"
     gene            complement(8674..12234)
                     /gene="smc"
                     /locus_tag="U0342_000067"
     CDS             complement(8674..12234)
                     /gene="smc"
                     /locus_tag="U0342_000067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465329.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome segregation protein SMC"
                     /protein_id="HEM2421449.1"
                     /translation="MLLKRLEMNGFKSFADKVAIDFVPGMTAVVGPNGSGKSNITEAI
                     RWVLGEQSAKSLRGGRMGDVIFAGSDTRKPINFAEVSLILENEDHFLPLDYSEVAVTR
                     RIYRNGDSEFLINKENCRLKDIVDLFMDSGLGRESFSIISQGKIDEILNSKPEERRSI
                     FEEAAGVLKYKHRKKQAENKLFETEENLNRVQDILYELEGQLEPLEMQASIAKDYLFQ
                     QEELEKYEVTLLASEISSLTEKLAEVRKEFGENQTVLIKLREELHAEEAVISREKHAL
                     NETDIALDNLQERLLVETEKLEQLEGERNLQLERKKHSSENEQVYAETLAAITEKITA
                     LEEQKEVLSSSKLEKETALEIAVKAKKELEVTLAKYDDLSEEAIENRKSDYIDLRHTQ
                     TTINNDLGYIERQIGQITSRIDKLDLENSHHIDDRKDMLAQIETTKTHLTKIQSELTE
                     QMEIYREVQQTLAKQEAVFGTQERALYKHYETVQQMKSRKETLEELADDYAGFFQGVR
                     EVLKAKKEIPGILGALVELVEIPAKYQQAMETALGASAQNVVVEDDRVAREAISFLKK
                     TKSGRATFLPLSTIQPRELPAATKNALSNQPAFIALASEVISFDEKVSPVILNALGTT
                     ILAKDLKGANTLARLVNFRYRIVTLEGDVVNAGGSMTGGATKGGKSSILTRKHELGQL
                     AEKITELNEATREMESAVQLAKDSMAKKREELEETRGIGENLRLQEKELLGKLDRETE
                     NLERFNKQLQLYDIEKADGSEELNKLLERKETLLHEQVEIAKQIEATDEEIKAMTSSS
                     KALESKRAADLESLSSLKAQIAAKREQLQSATEAVERVTTTLHENYEQKEAAEQKLAS
                     LKTNLTSVHTSEESARKSIEELRKDKAETSEKLAQTRQTRAELQEKLELLEAELTQKN
                     NQISFYVEQKNNAEISIGRLEVDINNRIDRLQEAYLLTPEQAEEKILPEVNTEQARSK
                     VRLLKRSIDELGIVNIGAIEEFERIQERFDFLNRQQADLLAAKETLFKVMDEMDEEMK
                     IRFSESFEAIKTEFAIVFPELFGGGSAELVLLDPENLLTTGIDIVVQPPGKKLQNLSL
                     RSGGERALTAIALLFAIIRVRPVPFCILDEVEAALDEANVTRFSRYLKQFESGTQFIV
                     ITHRKGTMEEADVLYGVTMQESGVSKLVSVRLEETAELIK"
     gene            complement(12257..12946)
                     /locus_tag="U0342_000068"
     CDS             complement(12257..12946)
                     /locus_tag="U0342_000068"
                     /EC_number="3.1.26.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease III"
                     /protein_id="HEM2421450.1"
                     /translation="MNQWEELQESVGFDFKDVELLKQAFTHSSYVNEHRRENVKDNER
                     LEFLGDAVLELTVSNYLFNKYPDMAEGHMTKMRAAIVCEPSLVEFAEAVHFSKYVRLG
                     KGEEKAGGRTRPALLADVFESFIGALYLDNGIDKVVTFLERVIFPKIDAGAYLQTVDY
                     KTQLQEIVQRDRDVLIEYDILGETGPAHNKAFDAQVIVNGQVLGKGSGRTKKQAEQSA
                     AQFAINQLTHR"
     gene            complement(13141..13374)
                     /locus_tag="U0342_000069"
     CDS             complement(13141..13374)
                     /locus_tag="U0342_000069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl carrier protein"
                     /protein_id="HEM2421451.1"
                     /translation="MAEVLEKVTKIIVDRLGVEESKVTLEASFKEDLGADSLDVVELV
                     MELEDEFGVEISDGDAENINTVGDAVKYIEANA"
     gene            complement(13481..14224)
                     /gene="fabG"
                     /locus_tag="U0342_000070"
     CDS             complement(13481..14224)
                     /gene="fabG"
                     /locus_tag="U0342_000070"
                     /EC_number="1.1.1.100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-[acyl-carrier-protein] reductase"
                     /protein_id="HEM2421452.1"
                     /translation="MTLQGKVAVVTGGSRGIGRDIAIKLAKEGANIFFNYNGSPEAAE
                     ETAKLVAEHGVEVEAMKANVAIAEDVDAFFKQAIERFGRVDILVNNAGITRDNLLMRM
                     KEDEWDDVININLKGTFLCTKAVSRTMMKQRAGKIINMASVVGLIGNAGQANYVASKA
                     GVIGLTKTTARELAPRGINVNAVAPGFITTDMTDKLDEKTKEAMLAQIPLGAYGTTED
                     IANAVLFLASDASKYITGQTLSVDGGMVM"
     gene            complement(14228..15169)
                     /gene="fabD"
                     /locus_tag="U0342_000071"
     CDS             complement(14228..15169)
                     /gene="fabD"
                     /locus_tag="U0342_000071"
                     /EC_number="2.3.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACP S-malonyltransferase"
                     /protein_id="HEM2421453.1"
                     /translation="MTKIAFVFPGQGAQKIGMGQDVAAEYPEAKKIYDDADERLGFSI
                     TEIITEGPIELLTKSENAQPALVSTSVAILRALETYGVKADYVAGHSLGEYSALVAGG
                     FLEASDAIYLVRKRGELMEAAVPNGAGAMAAVLGVDRETLKTITEEVTKEGDAVQLAN
                     LNCPGQIVISGTTAGVEKAGGKAKESGAKRVLPLAVSGPFHSSLMEPAALAFRDVLAE
                     VKISDGQIPVVNNVDAKETTDKSEISDKLIKQIYSPVLWEDIVEELIKNGVDTFVEIG
                     SGKVLVGLIKKINRDVTVLSAGDAESVKSVAATLKGE"
     gene            complement(15162..16175)
                     /gene="plsX"
                     /locus_tag="U0342_000072"
     CDS             complement(15162..16175)
                     /gene="plsX"
                     /locus_tag="U0342_000072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acyltransferase PlsX"
                     /protein_id="HEM2421454.1"
                     /translation="MKIAVDAMGGDHAPKEIVLGVMKAVAQYKDVEILLFGDETKINE
                     YLTDKTRVKIIHTDEKIESDDEPVRAVKRKKKASMVLAAQAVKDGEADACISAGNTGA
                     LMSTGLFVIGRIKGIDRPALAPTLPTVTGKGFVMLDLGANAEAKPEHLLQFGLMGSVY
                     AEKVRKIDRPRVALLNIGTEETKGNDLTKKSFELMKNQDAYEFIGNIEARDLLMDVAD
                     VVVTDGFTGNMVLKSIEGTGAAFLSMLKMSLLNGFKNKVAASFLKKDLMALKAKMDYS
                     EYGGACLFGVQAPVVKAHGSSNANGIFTTIRQVREMVEKQVVETIKAEVDKVKVGGTE
                     SND"
     gene            complement(16196..16765)
                     /gene="fapR"
                     /locus_tag="U0342_000073"
     CDS             complement(16196..16765)
                     /gene="fapR"
                     /locus_tag="U0342_000073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription factor FapR"
                     /protein_id="HEM2421455.1"
                     /translation="MKKYSKKDRQMKLQVAIEENPFITDEQLAEKFGVSVQTIRLDRV
                     ALSIPELRERIKHVASVNYADAVKSLPIDEVIGEIIDIQLSKSAISIFDVRSEHVFKR
                     NKIARGHHLFAQANSLATAVIPNEIALTTQATVRFVRSVNEGERIIAKAKVRPATDNR
                     AITIVDVKSYVGDEIVLKGKFEMYHATQK"
     gene            complement(16947..18995)
                     /gene="recG"
                     /locus_tag="U0342_000074"
     CDS             complement(16947..18995)
                     /gene="recG"
                     /locus_tag="U0342_000074"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecG"
                     /protein_id="HEM2421456.1"
                     /translation="MSELKRIPTTEIKGIGEETAKTLKELGLSTVHDLLWNFPYRYED
                     YRLRDLSEVAHEERITIQGEVLTEATVAFYGRKKSKLSFRVSTEGQVIKIDFFNQPYL
                     KSKISVGETVTISGKWDKSRAQVTASKIKIGAVESEEELEGVYRLKGTLRNKTMQKYT
                     RLAFDSYSQDIEEVIPSNLLEKYQLMDRLEAVRILHFPKNNEELKQARRRMVYEEFLL
                     FQLKMQFFRKIEREKSGGISINYDVEDLRHYIDSLPFPLTKAQKRVVNEICGDMLSHF
                     HMNRLLQGDVGSGKTVVASIAMYAAAKSGFQSALMVPTEILAEQHANSLVELLQPFDI
                     TVGLLTSSVKGKQRRELLAMLENGSIDVLIGTHALIQDEVIYHRLGLVITDEQHRFGV
                     AQRRVLREKGEYPDVLFMTATPIPRTLAITAFGEMDVSIIDELPAGRKEIETYWVKHQ
                     MLDRVIGFMEKEIDKGHQVYIICPLIGESEKLDVQNAIDVFNILQNKWGTKYIPGLMH
                     GKLLPADKEQIMRDFNNKKIDCLVSTTVVEVGVNVPNATMMVIYDADRFGLAQLHQLR
                     GRVGRGADQSYCILIADPKTEVGKERMMIMSETNDGFVVSERDLELRGPGDFFGRKQS
                     GVPEFKVADMVHDYRVLEIARQDAVHMIFEEDMLENKNYEKLVALLEEEGVFTEQKLD
                     "
     gene            complement(18988..19878)
                     /gene="sdaAA"
                     /locus_tag="U0342_000075"
     CDS             complement(18988..19878)
                     /gene="sdaAA"
                     /locus_tag="U0342_000075"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent,
                     subunit alpha"
                     /protein_id="HEM2421457.1"
                     /translation="MFRTVAELVDIAERENLTIAEIMIKREMNISGLPREEITAAMER
                     NLDIMEEAIREGETGVTSTTGLTGGDAVLMQDYIKKGNFLSGEVLLDSVAKAIATNEV
                     NASMGVICATPTAGSAGVVPGVLFSLKDRLEMSREDMVNFLFTAGAFGYVVANNAFIS
                     GAAGGCQAEIGSASAMASAAIVAAAGGTPEQSAHAMAMTMKNMLGLVCDPVAGLVEVP
                     CVKRNALGSSQAIISADMALAGIKSRIPCDEVIEAMHRVGLQMPSSLRETAEGGLAAT
                     PTGRAIQRKIFGLSPEDKRE"
     gene            complement(20014..20676)
                     /gene="sdaAB"
                     /locus_tag="U0342_000076"
     CDS             complement(20014..20676)
                     /gene="sdaAB"
                     /locus_tag="U0342_000076"
                     /EC_number="4.3.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-serine ammonia-lyase, iron-sulfur-dependent
                     subunit beta"
                     /protein_id="HEM2421458.1"
                     /translation="MKFNSVFDIIGPVMIGPSSSHTAGASRIGAIARAVFNEQPSQVD
                     IHLYGSFAKTYKGHGTDVALIGGLLGFEPDDPRMKESPKLAEEWGMRIQFIEEVEEPP
                     HPNTVKLVLKHGMQQMTLIGASIGGGKVEIIRLNEFELEFTGTAPAILILHQDKFGAI
                     AAVSSVIADHKINIGQMKVSRKVKGDEALMVIEVDQQVEQALISKIAELPGIYQVASV
                     MI"
     gene            complement(20716..22374)
                     /locus_tag="U0342_000077"
     CDS             complement(20716..22374)
                     /locus_tag="U0342_000077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DAK2 domain-containing protein"
                     /protein_id="HEM2421459.1"
                     /translation="MSIYQLDSEKFAAMIALGAENLAKNADFVDSLNVFPVPDGDTGT
                     NMNLSMTSGAEEVAKNDKETISAVGANLAKGLLMGARGNSGVILSQLFRGFSKAIENK
                     ETLNAEEFAGAFVKGVETAYKAVMKPVEGTILTVAREAAKAGVAAASEHQDIELVMEA
                     ILKQGKVALEKTPDLLPVLKEVGVVDSGGQGLIIIYEGFYGALTGKMAEAPDYMASMG
                     ELINAEHHRHVQDFMSTEDIHFGYCTEIIVKINENKPGQKPFDEEQFRQDLSKLGDSL
                     LVAADDEVVKVHVHVEHPGEVLNYGQQYGSLLKMKVENMREQHTEIVGDDKVPAKEKA
                     AYGIVTVSAGEGLKKLFESMGVSVVLSGGQTMNPSTEDIVKAIESANAEQVFVLPNNK
                     NIQMAAEQAAQILGDDKVQIIPTKTIPQGLTAVLSFQADQDFLANAEAMKAAIEDVAS
                     GQVTTAVRDTTVEGVEIKKDSFIGMVEGKIKVSCATLEEAAYETLEKLLDDDSEIITI
                     IVGEDADTSKAETLADKVTEAFPDVEVEIHEGDQPVYPYIFAVE"
     gene            complement(22389..22754)
                     /locus_tag="U0342_000078"
     CDS             complement(22389..22754)
                     /locus_tag="U0342_000078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM2421460.1"
                     /translation="MAIEIDTKLGKIDITSDVIATIAGGAAEENFGIVGMASRHQIRD
                     GLTDILRRENYTKGVIVRQEEEGIHIDMYIIVSFGTKISEVAHNVQERVKYTLEKTLG
                     ITVESVNIYVQGVRVIKES"
     gene            23053..23241
                     /locus_tag="U0342_000079"
     CDS             23053..23241
                     /locus_tag="U0342_000079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L28"
                     /protein_id="HEM2421461.1"
                     /translation="MAKECVITGRKSRSGNKRSHAMNSSKRTWKANLQKVRILVNGKP
                     KKVWVSARALKSGKVERV"
     gene            complement(23338..23982)
                     /locus_tag="U0342_000080"
     CDS             complement(23338..23982)
                     /locus_tag="U0342_000080"
                     /EC_number="2.7.6.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine diphosphokinase"
                     /protein_id="HEM2421462.1"
                     /translation="MKIINIMVGGPASEIPDLAQYTSAEISWIGVDRGAKRLLDYGIV
                     PTVAMGDFDSLSKEELAHLKTKVADVHEFPAEKDETDTEIGLSWAMEQNPDKIRIFGA
                     TGGRLDHLLANLMMLTKPKFLSAVPVVEMIDRHNYIKMYMPGSYTIEKLPDKKYVAFT
                     TMKDVTGLTLKGFAYPLENATYPVGSALSSNEFVGQMGEFSFKSGMILLTQSND"
     gene            complement(24046..24702)
                     /locus_tag="U0342_000081"
     CDS             complement(24046..24702)
                     /locus_tag="U0342_000081"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2421463.1"
                     /translation="MGKIAPSILSADFANLARDIKEVENCGADYIHIDVMDGHFVPNI
                     TFGPAVVQAIRPETKLPLDVHLMIENPDTYIPEFAKAGADYITVHVEACTHLHRTLQL
                     IRSYGVKAGAVLNPATPIDVLQHVLNELDMVLFMTVNPGFGGQKFIPEVLEKISAFKK
                     IVDEKGLDIEIEVDGGVDHETAKLCRDAGANVFVAGSYIYGNKNRQTPIDKLRAIVGE
                     "
     gene            complement(24705..25580)
                     /gene="rsgA"
                     /locus_tag="U0342_000082"
     CDS             complement(24705..25580)
                     /gene="rsgA"
                     /locus_tag="U0342_000082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM2421464.1"
                     /translation="MLEGQIIKALSGFYYVFSEGKVYQCRARGNFRKRNISPLVGDDV
                     EFQIENKTDGYILDVMSRENALVRPPVANIDIAILVFSAVEPDFSTNLADRFLVAIEK
                     EDIKPVICISKMDLASESEKEQIAVYKDIYEAIGYDVFVTNDEPDKEAIKDYISGKTA
                     VIAGQSGVGKSTLLNSLNSDLTLKTAEISNALGRGKHTTRHVELMPIGDGFVADTPGF
                     SSIEWDDLQPETLQFCFPEMEDRRSGCKFRGCMHDNEPNCAVKTAVEANEIAEFRYKH
                     YIQILQELKNRKPRY"
     gene            complement(25599..27566)
                     /gene="pknB"
                     /locus_tag="U0342_000083"
     CDS             complement(25599..27566)
                     /gene="pknB"
                     /locus_tag="U0342_000083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stk1 family PASTA domain-containing Ser/Thr
                     kinase"
                     /protein_id="HEM2421465.1"
                     /translation="MMIGKRLSDRYKILHAIGGGGMANVYLAHDIILDRDVAVKILRI
                     DLADESNLIRRFQREAQSATSLVHPNIVSVYDVGEENDLHYIVMEHVDGMDLKQYIHE
                     NHPISYDKAVDIMLQIVSAVAIAHQHHIIHRDLKPQNILIDHDGVVKITDFGIAMALS
                     ETSITQTNSLLGSVHYLSPEQARGGMATQKSDIYSLGIVLYELLTGKVPFDGESAVSI
                     AIKHLQADIPSARAQNPEIPQSLENIIIKATAKDPFLRYQNAEEMEKDLQTCLNQDRL
                     NEPKYIFPTDDGDTKAIPIIATKDTMQNLDKTIVPEGKVAAAEVAPEENKGKKKKKMS
                     KKKKIALIVSSVIIIFIIGILLLWLLGKSPDEVAVPDVSGKTEDQAVALLQKEGFVIG
                     KTAEKNSDEVAEGKVINTDPEAGEMKEKGTKINLFVSIGSKKITMDDYTGRSYTDTKA
                     LLEEQGFNNISSEEAYSSEVEKGLIISQTPTQGTDVVAKSTDVKFVVSKGAEPISLKD
                     LRGYTKTAVEDYASPLGLKVSSKEENSNTVEKGQVISQSPSAGTAMNPGDTIEIVISA
                     GPKEKQVKEVTKTFNIPYTPSDEENPQPQKIQIYIQDKDHSMTSAYREMSITQNTSVE
                     ITFQIEEGSSAGYKIISDDKVIDEGTVPYPN"
     gene            complement(27563..28321)
                     /locus_tag="U0342_000084"
     CDS             complement(27563..28321)
                     /locus_tag="U0342_000084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Stp1/IreP family PP2C-type Ser/Thr phosphatase"
                     /protein_id="HEM2421466.1"
                     /translation="MHAEFRTDRGRIRHHNEDNGGVFENKDNQPIVIVADGMGGHRAG
                     DVASEMAVRLLSDAWKETTALLTAEEIETWLQKTIQEVNKEIVLYSESEMDLNGMGTT
                     LVAAIMAQSQVVIANVGDSRGYLLQNHVLRQLTEDHSLVHELLRTGEISKEDAMNHPR
                     KNILLRALGVEGKVEVDTFVVPFQTSDTLLLCSDGLTNMVPETEMEEILKSKRTLSEK
                     ADVFITKANSYGGEDNITVLLVERDLTQKGRDAS"
     gene            complement(28344..29678)
                     /gene="rsmB"
                     /locus_tag="U0342_000085"
     CDS             complement(28344..29678)
                     /gene="rsmB"
                     /locus_tag="U0342_000085"
                     /EC_number="2.1.1.176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(967)-C(5))-methyltransferase
                     RsmB"
                     /protein_id="HEM2421467.1"
                     /translation="MKKQKTVRAIALELIIKIENNQSYSHLLINDALKKQKLNPLDKG
                     LLTELVYGTTQRKITLDYYLAPFLNKEPDNWVKNLLRMSVYQLTFLDKVPEHAILNEA
                     GDIAKDLGHQGVTKFVNGVLRNVIRKGVPSIDAIKDPVQKIAVETSLPEWLAKRWADQ
                     YGIEKLREIGLAFLVAPHQSIRVNQTEIPTEQLIKELNDQGITVTRNEFIEEALLVEK
                     GSVAETKAYKDGKCSIQDESSMLAAYALQLEDNLTVLDACAAPGGKTTHIAEKMHGTG
                     MVHALDIHEKKTKLIDQAAKRLQLLNIRTAHLDARTASTMFEPETFDRILVDAPCSGF
                     GVLRRKPDIKYAKTEKDIHKLAEIQLAILDDVSQLVKENGILVYSTCTIDKEENETVL
                     RAFLEKHPEFTLEPVVLPEKLAQIKKDDFIQLLPTDIGSDGFFVSSLRKVKS"
     gene            complement(29679..30629)
                     /locus_tag="U0342_000086"
     CDS             complement(29679..30629)
                     /locus_tag="U0342_000086"
                     /EC_number="2.1.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionyl-tRNA formyltransferase"
                     /protein_id="HEM2421468.1"
                     /translation="MTKIIFMGTPEFSVPVLAQLASTYDVVAVVTQPDRPVGRKRVLT
                     PPPVKKAALELAIPVYQPEKLRTSSELEELIALEADLLVTAAYGQILPNSLLESPKHG
                     AINVHASLLPEYRGGAPVHYALLDGKTETGVTIMYMVEKLDAGDMISQRKIPITDEDN
                     TGTMFDKLSKLGAELLMDTLPDFLAGKITAIPQDPEKVTFARNISREQEKIDWTKPGR
                     TIFNQIRGLSPWPVAYTTLEEKPFKIWEATYEETYEETKEDGEPGAILADKTTLKIVA
                     GDGTLIVPTVIQPAGKPKMDVHSFMTGAGRNLSKSTRFGE"
     gene            complement(30643..33036)
                     /gene="priA"
                     /locus_tag="U0342_000087"
     CDS             complement(30643..33036)
                     /gene="priA"
                     /locus_tag="U0342_000087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein N'"
                     /protein_id="HEM2421469.1"
                     /translation="MINIAKVIVDVPAMQVDRPFDYYIPEDLEELIRPGMRVSVPFGN
                     RKIQGFVIALGETEENPKLKGIDGVMDLAPVLNEELMELGDWLAEDTLSFRVSAYQAM
                     LPAALRAKYEKYFLRLDEENEELEQLFEGYETLDWKVAEARGLLKQIGKWVREGSVEV
                     VYQVKNKITSKKIRVVNCLKSPHQLAEIIEDMPKNAKAQSRVLAFFQAFEGNEITAAE
                     LKKQAETTDATIKKLVDLGILSIQEKIVSRDPYENHQFEKSESLQLLPDQQTACEKIT
                     AATDQETFLIHGVTGSGKTEIYLQTIEAKLKEGKEAIVLVPEISLTPQMVERFKSRFG
                     SEVAVLHSALSSGEKYDEWRKIERKEARVVVGARSAVFAPFENLGIIIIDEEHEASYK
                     QEDNPRYHARDVAIWRATKYQCPVVLGSATPSLESFARAKKGVYTLIELPSRVNDRAM
                     PEVSVVDMREELRKENRTEFSTELLEKIKERIAKKEQTVLMLNRRGYSSFVMCRDCGY
                     VVECPNCDISLTYHQSSNQMKCHYCGHEERVPQKCPSCEGEHIRYFGTGTQKVEESLT
                     KLIPEARVIRMDVDTTRTKGAHEKLLKSFRNHEADILLGTQMIAKGLDFPDITLVGVL
                     NADTMLHLPDFRASERTFQLLTQVSGRAGRHERTGEVIVQSYNPEHYSIEFAKKHDFI
                     GFYNHEMQLRKMGSYPPFYYLTMINVSDENEMKAIRTIQEMAQFLRGKLGPDAVILGP
                     VPSTITRIKNKYRYQCIIKYKIEPNLKKELKTLITHYQKDQQKGLTITIDVQPYVLM"
     gene            complement(33041..34240)
                     /gene="coaBC"
                     /locus_tag="U0342_000088"
     CDS             complement(33041..34240)
                     /gene="coaBC"
                     /locus_tag="U0342_000088"
                     /EC_number="4.1.1.36"
                     /EC_number="6.3.2.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional phosphopantothenoylcysteine
                     decarboxylase/phosphopantothenate--cysteine ligase CoaBC"
                     /protein_id="HEM2421470.1"
                     /translation="MQGKNILLAVSGGIAVYKAVALTSKLTQAGANVKVMMTEHAQEF
                     VPPLSFQVLSKNDVYTDTFDEKKSSVVAHIDLADWADLVIVAPATANVIGKMANGIAD
                     DMVTTTILATEAPVWVAPAMNVHMIQHPAVIRNINRLYADGVRFIEPEEGYLACGYVG
                     RGRLEEPEKIVLRIAEFFQEDKDLLRDKNVLVTAGATREKLDPVRYFTNHSTGKMGFS
                     IAESAARHGAKVTLVTTSKALPVPPGVEAIYVESAEEMYQAVDEHKVSQDIFVMTAAV
                     ADYTPAKVSDQKIKKQPGDFAIEMKRTKDILLEIGQHKTADQVVIGFAAETENLEANA
                     RKKLTSKNADMIVANNISVAGAGFSGDTNIVTFYRKDGSSKALPILDKKEVAEHIIKE
                     TANFLRK"
     gene            complement(34395..34598)
                     /locus_tag="U0342_000089"
     CDS             complement(34395..34598)
                     /locus_tag="U0342_000089"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit omega"
                     /protein_id="HEM2421471.1"
                     /translation="MLYPSIDNLLLKIDSKYSLVTVAAKRARYMQLENDKGVLPSYQS
                     DKFVGKALEEIHAGKLVLQNDDK"
     gene            complement(34598..35215)
                     /gene="gmk"
                     /locus_tag="U0342_000090"
     CDS             complement(34598..35215)
                     /gene="gmk"
                     /locus_tag="U0342_000090"
                     /EC_number="2.7.4.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="guanylate kinase"
                     /protein_id="HEM2421472.1"
                     /translation="MTERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLP
                     REGEQDGVDYYFRSREVFEQAIKDGKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLE
                     IEVQGAMQVRKAMPEGIFIFLTPPDLSELKNRIIGRGTESMEVVEERMETAKKEIEMM
                     ASYDYAVVNDVVANAVQKIKGIVETEHLKTERVIHRYKKMLEGLQ"
     gene            complement(35234..36109)
                     /locus_tag="U0342_000091"
     CDS             complement(35234..36109)
                     /locus_tag="U0342_000091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YicC family protein"
                     /protein_id="HEM2421473.1"
                     /translation="MVKSMTGFGRATKEFEAFKVTIELKAVNHRYSEFLFRMPKQLAY
                     LEGKLKKIISKQIKRGRIEVFFSITGEQITKRELHIDWDLADSYYRFIKQASARYELQ
                     ELPTMADLLQEQAYLSIEEEVEASSELERLVLETLARATERLDEMRSMEGAELLLYFK
                     QHLTALEKSLEIIQAEIPNTEKHYQEKIETRLQNVVGDQFDPSIVLTEVAMLLEKADI
                     NEEVERTKSHLKQFYGIILLEEPIGRKLDFLIQEMNREVNTIGSKASSLKITEQVVEM
                     KTTLEKIREQVQNVE"
     gene            36266..37978
                     /gene="fbpA"
                     /locus_tag="U0342_000092"
     CDS             36266..37978
                     /gene="fbpA"
                     /locus_tag="U0342_000092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rqc2 family fibronectin-binding protein FbpA"
                     /protein_id="HEM2421474.1"
                     /translation="MAFDAMFLKAMTEELAEHGESGRIMKIHQPFSHELVLYIRKNRE
                     NKRLLISSHPSYARIQWTDDIPENPATPPMFCMLLRKYLEGAIIESITQLPNERILQF
                     SIRGKDDIGENRFCDLFVEIMGRHSNITLVDRAKNVIVDCIKHVSPAQNSYRTLLPGA
                     TYVLPPATDKLHPFEVTSEQILDRLDFSAGRMDKQLVQNFAGFSPLLAREIVFRAGNL
                     TADSLVAAFFEVIGLVNEHLGHAAVPNEWRIQNKEDYYFFPLRHVDAETTEFANLSTL
                     LDHFYIGKARRDRVHQFAHDLEKLLSNELARSRLKIEKLENTLLETEKADVYRIQGEL
                     LTANLHLMERGMEEITVENFYDDMKKMTIALDTRKTPSANAQSYFSRYQKLRNAVEVV
                     KEQIALTKEEITYLESVESQLETSGPQDVEEIRQELAEQGYLRYKQKKGSRKKATLPA
                     PEKYTSSTGLTILVGKNNKQNDYLTNKLARNNEYWFHVKDLPGSHVVIQSNDPDETSI
                     TEAAMIAAYYSKARLSATVPVDGTLVKHVKKPNGAKPGYVIYDNQTTYFVTPDEKLVL
                     ELKN"
     gene            38066..38665
                     /locus_tag="U0342_000093"
     CDS             38066..38665
                     /locus_tag="U0342_000093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="short chain dehydrogenase"
                     /protein_id="HEM2421475.1"
                     /translation="MKILLIGASGTLGSAVKERLEKKAEVITAGRHSGDVTVDITSVD
                     SIKKMYEQVGKVDAIVSATGSATFSPLTELTPEKNAVTISSKLGGQINLVLLGINSLN
                     DNGSFTLTTGIMMEDPIVQGASAAMANGAVTAFAKSAAIEMPRGIRINTVSPNILEES
                     WDKLESFFQGFVPVPAAKVARAFEKSVFGAQTGESYKVY"
     gene            complement(38705..39334)
                     /locus_tag="U0342_000094"
     CDS             complement(38705..39334)
                     /locus_tag="U0342_000094"
                     /EC_number="2.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotate phosphoribosyltransferase"
                     /protein_id="HEM2421476.1"
                     /translation="MSIEKQVAEQLLEIKAVFLKPNEPFTWASGIKSPIYCDNRLTLG
                     FPKVRQFIAKSLAEKIKQTFGEVDVVAGTATAGIPHAAWVSDLLDLPMVYVRSKAKEH
                     GKGNQIEGPISKGQKVVVIEDLISTGGSSLKAVEALEEAGAEVVGIAAIFTYGLAKGK
                     QLLEESGTKLVTLTNYDELIEVALNENYVTGEDMETLKEWKKNPENWGK"
     gene            complement(39331..40032)
                     /gene="pyrF"
                     /locus_tag="U0342_000095"
     CDS             complement(39331..40032)
                     /gene="pyrF"
                     /locus_tag="U0342_000095"
                     /EC_number="4.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="orotidine-5'-phosphate decarboxylase"
                     /protein_id="HEM2421477.1"
                     /translation="MNKPIIALDFQTYEEVETFLAKFSGETLSVKVGMELFYSNGPII
                     VEKIKQQHHEIFLDLKLHDIPNTVKSAMIGLAKLGVDMVNVHAAGGKKMMEAAREGLE
                     IGSSSGKRPKIIAVTQLTSTSETDMQTEQLIKTSLLESVMHYSNLSKQAGLDGVVCSA
                     LEAEDIKQQNGADFLRVTPGIRLASDAADDQIRVVTPEKARLIGSSNIVVGRSITRAN
                     DPVEAYNQVLKEWNA"
     gene            complement(40029..40943)
                     /locus_tag="U0342_000096"
     CDS             complement(40029..40943)
                     /locus_tag="U0342_000096"
                     /EC_number="1.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase"
                     /protein_id="HEM2421478.1"
                     /translation="MNRLAVEIPGLSLKNPIMPASGCFGFGQEYSKYYDLNELGAIMA
                     KAVTPEPRLGNPTPRVAETASGMLNAIGLQNPGLEHVLAHELPFLEQFETPIIANVAG
                     ATEDDYVQVCARIGESKAVKAIELNISCPNVKHGGIAFGTDPDVAHRLTKAVKNVATV
                     PVYVKLSPNVADIVSIAQAIEAAGADGLTMINTLLGMRIDLKTRKPIIANGTGGLSGP
                     AIKPVAIRMIHQVREVSNIPIIGMGGVQTVDDVLEFLIAGADAVAVGTMNFTDPFICP
                     KLISELPKRMDELGISSLQELKKERANQ"
     gene            complement(40940..41704)
                     /locus_tag="U0342_000097"
     CDS             complement(40940..41704)
                     /locus_tag="U0342_000097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase electron transfer
                     subunit"
                     /protein_id="HEM2421479.1"
                     /translation="MLQTEMKVIQQTEIADKVYELILTGERVADMSPGQFLMLKPSRS
                     DLLMRRPISICSYDKTAKTCILLYRIEGDGTRDFSKLSEGDTIDVLGPLGKGFDIDQT
                     PAPKTALLIGGGIGVPPMYQLGKELAGKGVQVTFVNGFQSAKDSFYEKEMNAYGTVHI
                     ATVDGSLGTQGFVTDITNNFPEEPDVIYSCGPKAMLQAVKASFPETKTYLSLEERMAC
                     GIGACYACVCPKADDAKKQFKVCEDGPVFRADEVSL"
     gene            complement(41727..44939)
                     /gene="carB"
                     /locus_tag="U0342_000098"
     CDS             complement(41727..44939)
                     /gene="carB"
                     /locus_tag="U0342_000098"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamoyl-phosphate synthase large subunit"
                     /protein_id="HEM2421480.1"
                     /translation="MPKRDDIKTILVIGSGPIVIGQAAEFDYAGTQACLSLKEEGYRV
                     VLVNSNPATIMTDAEMADKVYIEPITLDFVSRIIRKERPDAILPTLGGQTGLNMAMEL
                     SAAGILDECNVEVLGTDLTAIKKAEDREAFRDLMNELGEPVPESDIIHNLDEAYTFVE
                     RIGYPVIVRPAYTLGGSGGGICHNEQELIETVTSGLKLSPVTQCLLEKSIAGFKEVEY
                     EVMRDANNNAMVVCNMENIDPVGIHTGDSIVVAPSQTLSDREYQLLRDVSLKIIRALE
                     IEGGCNVQLALDPDSYNYYVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEV
                     RNPVTGTTFAHFEPTLDYVVAKIPRFAFDKFEQADRRLGTQMKATGEVMAIGRSWEEA
                     LLKAVRSLEIGADHLLLEEAENADEATLERKICFPEDDRLFFLAAALRRGQTIEQLHA
                     KTKIDLFFLYKLSKTIELENRIKENPQNQEILAEAKRAGFSDAFLATCWNVDEQAIYD
                     LRKAQNLFPVYKMVDTCAAEFESTTPYFYSTYEEENESTRSAKESVIVLGSGPIRIGQ
                     GVEFDYATVHSVWAIQQAGYEAIIINNNPETVSTDFSISDKLYFEPLTLEDVMHVIEI
                     EQPLGVVVQFGGQTAINLADGLAKRGVKILGTSLEDTDRAENRDAFEKALEILQIPQP
                     AGKTATSVEEAINVATDIGYPVLVRPSYVLGGRAMEIVESEEALKHYMTNAVKVNPKH
                     PVLVDRYVSGQEVEVDAISDGENVLIPGIMEHIERAGVHSGDSIAVYPAQRLSSQVKN
                     TIVDYTTRLATGLNIIGMLNIQYVVDGEEVFVIEVNPRSSRTAPFLSKITEIPMANVA
                     TRVILGENLIDLGYTPGLAPEKQEIFVKVPVFSFAKLRSVDTSLGPEMKSTGEVMGKD
                     VTLEKALYKGFVASGTTMHDYGTVLLTVADRDKEEAVELAKRFNRIGFTIMATKGTAS
                     TLEEADIPVSQVKKIGENQETLIDYIRNGQVTLVVNTLTTGKRPERDGFQIRRESVEN
                     GIPVCTSLDTAEAILRVLESRSFELESMNTSEVKQPKARV"
     gene            complement(44932..46023)
                     /gene="carA"
                     /locus_tag="U0342_000099"
     CDS             complement(44932..46023)
                     /gene="carA"
                     /locus_tag="U0342_000099"
                     /EC_number="6.3.5.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing carbamoyl-phosphate
                     synthase small subunit"
                     /protein_id="HEM2421481.1"
                     /translation="MTKRILMLEDGNYFIGDAIGSEKETIGEVVFNTGMTGYQETITD
                     PSYYGQIITFTYPLVGNYGVNRDDFESINPAVKGVVVREAAEFPSNWRNQITLDDFLK
                     EKGIPGIAGIDTRKLTKLIRKEGTLKGILAAETANKEELLHHLRSVRLPVDQVHEVSS
                     AKAFASPGDGKRVVLVDYGVKSSILRELNKRNCYVTVVPYNTTAEEILAMHPDGVMLS
                     NGPGDPKDVPEALEMIRGIQGKLPLFGICLGHQLFALANGADTFKLKFGHRGANHPVK
                     ELATGRVDFTAQNHGYAVEKDSLIGTDLKVTHIELNDETVEGLAHKEYPAYTVQYHPE
                     ANPGPSDVNYLFDEFMEMMNGKEEGELHA"
     gene            complement(46020..47300)
                     /locus_tag="U0342_000100"
     CDS             complement(46020..47300)
                     /locus_tag="U0342_000100"
                     /EC_number="3.5.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotase"
                     /protein_id="HEM2421482.1"
                     /translation="MYVLKNGQVLNASGELENKDVLIQNGKVNLIADSIEVTSGEEFD
                     ATGKLIAPGFIDVHVHLREPGGEHKETILTGTQAAARGGYTTICSMPNTKPVPDSKEV
                     MESLQAKIKETAKVRVLPYASITTSLGTDELVDFEALKEAGAFAFTDDGVGVQLAGTM
                     YEAMKRAAALDMAIVAHCEDNSLIYGGVVHDGIFAEKEGLKGIPNIAESVQIARDVLL
                     AEAAGCHYHVCHISTKESVRVVRDAKRAGIRVTAEVSPHHLILDEEAIPGNDGNWKMN
                     PPLRSKEDRAALLEGLLDGTIDFIATDHAPHAAEEKNVPMEQAAFGIVGLETAFPLLY
                     THFVKTNEWTLKQLIDWMTVKPAECFKLPYGKLEEGSVADIVVLDLEKEANIDPATFY
                     SKGKNTPFVGETCIGWPVATFSEGTLVYNEGEIK"
     gene            complement(47288..48199)
                     /locus_tag="U0342_000101"
     CDS             complement(47288..48199)
                     /locus_tag="U0342_000101"
                     /EC_number="2.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate carbamoyltransferase catalytic
                     subunit"
                     /protein_id="HEM2421483.1"
                     /translation="MKNLLSMEALTVHEIEHLLEQAAQFKRGKKATFNEQTFAVNMFF
                     EPSTRTHTSFEVAEKKLGVEVVSFDAASSSMTKGETLYDTLLTMQAVGVNVAVIRHSE
                     ENYYAGLEKLDIAIVNGGDGCGEHPSQSLLDLFTIKEQFGTFQGLKVAIAGDIRHSRV
                     ANSNMKVLKRLGAELFFSGPREWFDESYLAYGTYLSVDEIVEKVDVLMLLRVQHERHS
                     GTDEFTKESYHEKFGLTENRAKQLKEDAIIMHPSPVNRDVEIADSLVESEKSRIVTQM
                     TNGVFIRMAILEAILKEQEMRAKLCTY"
     gene            complement(48280..49566)
                     /locus_tag="U0342_000102"
     CDS             complement(48280..49566)
                     /locus_tag="U0342_000102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil permease"
                     /protein_id="HEM2421484.1"
                     /translation="MTETTETVTKPVLDIHERPSFNKWIILSIQHLFTMFGSTIFVPS
                     VTGLSPGVALVSSGLGTLAYLGITRGKIPAYLGSSFTFIAPITALLAAKSGGGPGAVM
                     VGTFSVGVVYAIVSLIVYYAGVDWIQKVLPPIVVGPVIMVIGLSLAPSAAAMAMGTNN
                     GKYSLETLAVAVITLLATIIAMMFFKGFMGLIPILFGFTVGYLTSMAFGMVDYTLIKN
                     ASFFQIPDFSIPFVNIDPVITVTVILSMAPLAFVTMAEHMGHQLLLNRITNKNFFKDP
                     GLHRSLLADGTASIIASFIGGPPVTTYGENIGVLAITKVYSVFVIGGAAVFAILFGFI
                     GYINAVITSVPTAVLGGISLLLFGVIATSGLRMMIENKIDLSVNRNMIIASVVLVVGI
                     GGLFIKAGTFELSGMALAAVIGIILNLVLPAEHRSA"
     gene            complement(49695..50246)
                     /gene="pyrR"
                     /locus_tag="U0342_000103"
     CDS             complement(49695..50246)
                     /gene="pyrR"
                     /locus_tag="U0342_000103"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional pyr operon transcriptional
                     regulator/uracil phosphoribosyltransferase PyrR"
                     /protein_id="HEM2421485.1"
                     /translation="MQKQVVVMDEAAIKRALTRVSYEIIERNKGTKNLALVGIKTRGI
                     YLAERLHKRILEIEGIDVPVGDIDITLYRDDLSFKDDKTREPAVHGTNIPFDINGKKV
                     VLVDDVLYTGRTVRAAMDALMDVGRPAQIHLAVLADRGHRELPIRADYVGKNIPTSGN
                     ERVEVRLTDVDNEEDAVIINKNE"
     gene            50478..50708
                     /locus_tag="U0342_000104"
     CDS             50478..50708
                     /locus_tag="U0342_000104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421486.1"
                     /translation="MAISKAKKKRQKLIREGHLNPEIKRSPFALIDLSSKQTKTKKGY
                     LYSKKRKNHQEDDSFFVYFFKFSHFLHINNLK"
     gene            50796..51620
                     /locus_tag="U0342_000105"
     CDS             50796..51620
                     /locus_tag="U0342_000105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2421487.1"
                     /translation="MGIMNSLLQQKEMVVKDWLTYYVSVDDPYIFTLKNDHRLMDETG
                     FVLENLFIGMTEDLGKMNAFARELGKAQFITSLGISRILFHIRLLEEFLLDYASEIKT
                     KSANYRELYLFSIKLHQVFSSFTQNLIEGYTRANEQKIIQKENQIIKESTKLIWIAEN
                     VFLLPLIGRITDERAKQLTETALVEVCEQPVNYLIIDLSGVQLESPNIGKYIEYFFSS
                     LKLVGVTPIITGMQPQTAKVMVQVNLTEQHGIKTFATLRQATKTLMKEKEARNARK"
     gene            complement(51638..52549)
                     /locus_tag="U0342_000106"
     CDS             complement(51638..52549)
                     /locus_tag="U0342_000106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM2421488.1"
                     /translation="MQNETLIIEESHARERVDKVIAEMMGKSRSAIQLMLKNGDITVN
                     GELAKPNYKVQVGDEIHYEVREPEELEVLAEDIPLDIYFEDKDMLVVNKPEGMVVHPS
                     AGHASGTLVNALLFHCDDLSGINGKIRPGIVHRIDKDTSGLLMVAKNDHAHESLAKQL
                     KDKTSDREYIALVHGDIVHQKGTIEAPIGRAKEDRQKMAVVRDGKEARTHFEVLERLP
                     GYTLINCKLDTGRTHQIRVHLKYIGHPLAGDPKYGPKNTIKGNGQFLHAAKLGFDHPT
                     TKERMMFEAPLPSSFEKALKSLRQEEY"
     gene            complement(52549..53013)
                     /gene="lspA"
                     /locus_tag="U0342_000107"
     CDS             complement(52549..53013)
                     /gene="lspA"
                     /locus_tag="U0342_000107"
                     /EC_number="3.4.23.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptidase II"
                     /protein_id="HEM2421489.1"
                     /translation="MYYYLITLAVIALDQLTKWIVVQNMEIGQKIEVIPGFLYWTSYR
                     NDGAAWSILEGHMWFFYLITVVVIGIIIYIMQKYAKGKRLFSISLAFILGGAIGNFID
                     RVLHQEVVDFVQTVWGNYYFPIFNVADAALSVGVVLMLVYVFVDDRKTKGIK"
     gene            complement(53095..54378)
                     /locus_tag="U0342_000108"
     CDS             complement(53095..54378)
                     /locus_tag="U0342_000108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM2421490.1"
                     /translation="MQKFFNKVFRLNEHKTNFRTEFLAGMIGFFTVAYIIVVNSSILA
                     EAGVPYQGAVLATIFISALGCLIMGFWANAPLILMPGMGINALFAYTLVQGMGLSWQV
                     ALAAVTMSGLLFMILAFTPLAGKLNEAIPLILKQAITVGLGLFLIFLGLEKGGIVTRG
                     KHAIIAVGDLGDPFVLATLVTLLLTMILVIRKIPGAFLWSLIIGTVVGVMFGVAGKAG
                     GASISVAPWSDVLFKADFSGMASVGFWSAVFTMTMVIVFETVGLTNGQVRQLKQTEKL
                     PRILKASSLTAFLSGLFGTSPTISALESGSMFASGAKTGLATITTGLFFIASLFLMPV
                     LSFIPNSAIAPILIIIGMSMLQEFKEMDLSNAAETFSALLIIVLIPLTYSIADGIAAG
                     FIAYPILRAFTKNEERTSPVMYVIAALFLLQFIIQ"
     gene            54552..55922
                     /locus_tag="U0342_000109"
     CDS             54552..55922
                     /locus_tag="U0342_000109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2421491.1"
                     /translation="MQKTVTYGAKWKQFLTIFTPIVITQLTLFSMTFFDTTMSGNYSN
                     QALAGVAIGSSFWAPVNAAFSGLLMAITPIIAQLIGAKKEKQVKNTVHNGLYIALFLA
                     FILILINFLVVPTILTHMPVTAEVAGIARHFLNGICIGIPAFFISAILRSFIDSLGLT
                     RVTMLITLCTVPFNIFLNYCFIFGNFGFPEMGGAGSGYATGITYWLVVLVSVILIQTQ
                     TRLRKFGIFKGLTALRFSKIKEIIGIGVPNGLTILFETSIFSAVTILMGAFGTETIAA
                     HQSANSVCTLLYAFPLSVASTLTILGGYETGAKRLKDAKQYRHIGMAAAIFIGCVNGA
                     ILFFFRDIIAGFYTNDPALSNLIMHFLVYAILFQFADAVLSPVLGALRGYKDVTVTSI
                     VAFISYWLIGLPVGYGLSFTNLGPFGYWIGLSTGLFVAAFILSIRVRKTEQKLSFNTK
                     DAEISS"
     gene            complement(55938..56870)
                     /locus_tag="U0342_000110"
     CDS             complement(55938..56870)
                     /locus_tag="U0342_000110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter substrate-binding protein"
                     /protein_id="HEM2421492.1"
                     /translation="MKKIIVVALFALVVVLAGCSSQNSDSKKTDGKLNVVATYSILAD
                     IVKNVGGDKIELHSIVPVGVDPHEYDPLPANIQSAADADLIFYNGLNLETGNGWFDRM
                     LETADKSRDDKEQVVELSKGVKPKYLTEKGKTSETDPHAWLDLHNGIIYTENVRDALV
                     KADPDNADFYKENAKKYINKLATLDKEAKQKFADLPENQKTLVTSEGAFKYFAARYGL
                     KAAYIWEINTESQGTPDQMKQIVGIVEKEKVPNLFVETSVDPRSMESVSKETGVPIFA
                     KIFTDSTAKKGEVGDTYLEMMQYNLDKIHDGLAK"
     gene            complement(56867..57709)
                     /locus_tag="U0342_000111"
     CDS             complement(56867..57709)
                     /locus_tag="U0342_000111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM2421493.1"
                     /translation="MLFLEGLMQYSFLQKALITSVTVGIVSGVIGSFIILRGMSLMGD
                     AISHAVLPGVAISYMMGMNFFIGAATFGIAAALGIGFVNQKSRIKNDTAIGIVFSAFF
                     ALGIILISFAKSSTDLYHILFGNVLAVRSSDMWMTIIIAIIVISLVALFYKEFLVSSF
                     DPVMAEAYGLNVKFLHYFLMLLLTLVTVSALQTVGIILVVAMLITPAATAYLLTNKLS
                     KMIVLASTFGAVSAIIGLYFSYIFNLASGAAMVLVATIIFFIAFLFAPKQGLLFSKKR
                     EVIE"
     gene            complement(57713..58435)
                     /locus_tag="U0342_000112"
     CDS             complement(57713..58435)
                     /locus_tag="U0342_000112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM2421494.1"
                     /translation="MEIQGLTIAYKQKVAIDNVTLQIASGKLTGIVGPNGAGKSTLLK
                     GMMGLIPREQGQVTLADKPLTYWRKKIAYVPQRSEVDLTFPITVFDMVLLGTYPALGL
                     IKRPGKKEKQLALDALEQVEMTGFMKRQIGELSGGQLQRVFIARALAQHAEIFFLDEP
                     FAGIDMTSEALIMRLLKKLRDNGKTIVVVHHDFHKVAAYFDDIILLNKKLVAHGPVEQ
                     TFTEEKIQFAYGDAPVAFATGV"
BASE COUNT        15596 a        12913 c        10712 g        19345 t
ORIGIN      
        1 aggatttgtt tgtaaagtgt tttttcttta cagagggaat ttttttcttt ttatttgacg
       61 gtttcggctt cagcacttag tttcccttgt tttagaaggt ggtggtaacg cacatatcct
      121 gaaatattat gctccacatc atcaattcta acccggaaag actggtggcg aatgaagaaa
      181 ctgccatcta ttcgcgctgg atttttgtag tagattgcta gctctgggta aaaatagcca
      241 tttaactggt agatagctcg tttagtgatt gttttttcca attcagctag tggatagtca
      301 tgaagcagtt tttgcaagtc ctctgtttcc atccgtagcg acatctcttt tgtagcaaca
      361 gtaagctcta aaaaggttgg aaatgtggtt tcgcgtccat aaataaatgg taggttgtcg
      421 aaagcatttt tcattccaaa ttcgtagtaa gcttcgtctg gaatatattt agtgatttca
      481 ttggcgcagt agctcagcca gtgatcatgg ttttgccagt agtcatcacg aatgaaatgg
      541 tcaaaagatt ttgccgctgc ctccagccat ttggaatcac ggtcaatttc atataagcgc
      601 aacaagccaa acacagcttc cccgtcgtaa taaataatcc ggaaaatatc ttttacttct
      661 aaagagggat actccaacac atgcgtgaac ttcccgtttt cttcttgtaa ggaaataatc
      721 gcattcgcaa tcttcctaga tagtggcaaa taggttttag ttccagtgat tttcatatat
      781 ttcgttaaag caagcaatgt cgccgctgaa ccgcctaatt taacttcacg caaccctggt
      841 tcaattaaaa aagctaattc gtctttttca taaataaagt tttgctctaa ataagttaaa
      901 gtgcttgtag ctgcttccaa aattgtttta tcgcctgtta attcgtatgc ttctaacatc
      961 gaataagttg tactcgcgtg gcgcaaacta ttatagtgtt taattttttt atcaaagcaa
     1021 gcaaaccagc cgtaattgaa ttcgcccgtt tgatttactt ggctcactaa ataatttcca
     1081 gcgtttccaa ctagttcaaa aactgcatct ggagttaatt gtttagtact tctacgacca
     1141 tgctcaagct cgcttggttc taactcatgg attttctttc cgtcaaaaaa ccatcctact
     1201 gtattaaaag taacaatagt ggaatctacg gttaagttta attgagcttg atttttattt
     1261 gtttggatta aatatctatt catattttca acgttgatag ctaaaccttc atcacctggt
     1321 agaaggatag cgttcgcatt aatttcttgt tccattaaag ctattttaaa attttcattt
     1381 aaggcaatgc ctcttctata ataatttttc ttcgttttta aagctttttt attccattct
     1441 cctaaatttt caagtcgata atccacagca acatcaattt taaaagaaat tgcctcttcg
     1501 gtttggtttt ttattgcact ttttttcatt tcattaatta agttggctag gcaaagatag
     1561 ctaaagttta tgacaatagc tcgtttattt ttatagccga ttgttagaaa gccatgccat
     1621 ttcccgttgt aagtggcgtg ttcttcgtct tctgttaatt gatcaataat tttattttca
     1681 agttcatcta atatacctct ccaaggcata tgtaccactc ctttttataa tatccctgcc
     1741 gctaaatttt cttagcgaca gggaatcgtt gtattgtggc tcttatttac ggaaaagacg
     1801 tagtaaaaac gcgccagcta gcgagaagag accaagccca acccacggaa gactactgtt
     1861 tgtatctcca gttgaaggaa gatcacttgc tgagatagaa gttgttccat ccgcgctata
     1921 acctgaggaa agcattgttc ctgaaccatt tgaactcatg ttcgtaacgg ttacgccagt
     1981 tcctccgtta gaagttccag tagttcctcc attggtagaa ggatttgatc caccatccgc
     2041 atcggcatca gcatcggcat cggcatccgc atcggcatca gcatccgcat ccgcatccgc
     2101 atccgcatca gcgtcggcat ccgcatcagc gtcggcatcc gcatcagcgt cggcatcaga
     2161 atctgctaat ggtaggacag ttacggctac atcttcactc gttttaactt cattaccata
     2221 tttagctgtt acttgaagat gaataacatc tccagctttc aaattataat taggaatatt
     2281 aatagtatag gttccatctg catggattaa gacatttccg ataacagtac cgtccggaag
     2341 agtcaaatta atatagaaag ttgttccagc cggtgcatct gattgcaatg atttcagaag
     2401 ggtatttata ttcatatttt tataaatgga agtacctgaa attgttttag ttccttcgta
     2461 aattggattt acagttggtt tttcaactag gaaatctctc cagtcaatgt ctacgtcggc
     2521 atcggcatcc gcatcggcat cggcgtcagc atccgcatcc gcatcggcat cggcgtccgc
     2581 atccgcatcg gcgtcggcat ccgcatcggc gtcagcatca gcgtcagcat ccgcatcggc
     2641 atcggcgtcc gcatccgcat ccgcatcagc atcagcatca gcgtcggcat cagcgtccgc
     2701 atcagcgtcg gcatccgcat cagcgtcggc atccgcatca gcgtcagcat cagcgtcggc
     2761 atccgcatca gcgtcagcat cagcgtcggc atccgcatca gcgtccgcat ccgcatcggc
     2821 atccgcatca gcgtcggcat ccgcatcagc gtccgcatca gcgtcggcat ccgcatcagc
     2881 atcagcatca gcatcagcat cagcgtcggc atcagcatca gcgtcggcat ccgcatcagc
     2941 gtccgcatcc gcatcggcgt cagcatccgc atcagcgtca gcatcggcgt cagcatccgc
     3001 atccgcatca gcgtcggcat ccgcatcagc atcagcatca gcgtccgcat cagcgtcggc
     3061 atccgcatca gcgtcggcgt cagcgtcagc atcagcatca gcatccgcat cagcgtcagc
     3121 gtcagcatcg gcgtcagcat cagcgtcggc atccgcatca gcgtccgcat cagcgtcggc
     3181 gtccgcatca gcgtcggcat ccgcatcagc gtcggcatca gcgtcggcat ccgcatcagc
     3241 atccgcatca gcgtcggcat cagcgtcggc atccgcatca gcatcagcat cagcatcagc
     3301 gtcagcatca gcgtcggcgt cagcatcagc atcggcgtca gcatcggcgt cagcgtcagc
     3361 atcagcatca gcatcagcgt cagcatcagc gtcggcgtcg gcgtcagcat ccgcatcggc
     3421 gtcagcatcg gcgtcagcgt cagcatccgc atcggcgtca gcatcggcgt cagcatcagc
     3481 gtcggcgtcg gcatccgcat ccgcatccgc atcagcgtcg gcatcagcat cagcgtcagc
     3541 atccgcatcc gcatccgcat cggcgtcggc atcagcgtca gcatcggcgt cagcatccgc
     3601 atcggcgtcg gcatcagcgt cggcatccgc atcagcgtca gcatcggcgt cagcgtcggc
     3661 atccccaaca tccgtagtaa taaacccacg agccgcatta ctattcaaca gatcaacatc
     3721 caaaagccca tcaccagttc tagcagcaaa atctaatttt ccatcattgg cactaggtag
     3781 cgcagttacg ccaagcgcta gcaaatcaat tgtcaaagtg aaagtagata tactaccaac
     3841 tccaactccc agtaagtgat ttacttttgc accaaccgca tttctactag aatcaataaa
     3901 gaaattgctt gagttacttc catttactgt accttgatta aataatccaa taccgccaat
     3961 tcctaaataa gcaattttat aatcaatttt cgtatttgct cttatatttg gattacttaa
     4021 aatagaagaa agttcacttg gtagttcaaa gtatggatag tacgtggata ctgcactagc
     4081 actaactaac tgattcccag aaagagtaat cactaatttc ccattagaat actgtgtatt
     4141 caaattagaa tttcctaata aatcaattgt tgccgcatcc gcttgaatac cacttagggc
     4201 aaattggtga ttaaaagaat cgtaattcac agtgacaggc gctaccatca tcgttgttgt
     4261 cgtaataagc gccgcaatta attttgcttt ttgcgctcgc ttttggtcta atctccgttt
     4321 gtaatctaca cgctgttttt tcatcatttt tcccccttaa aaatcaatcg ttcttgattt
     4381 tgaaaaataa ctgaaaacag aataaaggta ttaaattatg ttttcctaat aagctaacta
     4441 ttaagtatcc cctgaacctt tatccaatat cagattccaa ccatttcagc ccaatgtccc
     4501 tcccttcgtt ttcggaccta acattagctg ttataacccg ttagataact ttactatata
     4561 gtatattttt aaaaattaaa gtaaaaagta ctagaaccaa aaaatacttc aattcgattc
     4621 ttttagtcta aaagttatac aaatatacgt atttatagcc tgtatttaaa ctttagcact
     4681 gttcctaata gggtattaag acctatagca gttaacatta cacgaattgt ctttcaattg
     4741 tatacaaatc tttttaaaat ggttcttcac ttcagattct atttgtacgc aaaaaaaaag
     4801 ccctttttca agggcttact tttttaataa agataggctt tttttagttg ttctttttta
     4861 gcatcggtta gtccgagttt ttcttttaaa aagttgtcca tcgaaccata ttttgcatca
     4921 atttcatcaa aggctgcatt gatataagat tcacgaactt ccattacggc tgtcattcca
     4981 tcaatcactt ttttattatc tgtttttgct gcaacggctt caattgcttt tttattttcg
     5041 agggcacgat atttattgga aagcatataa tcgttaatga ctgtgttttt atccactcct
     5101 aatgctgaca gaacgagggc ggttccaaat ccagcacgat cttttccagc tgtacagtgc
     5161 caaagaacag atccatcttg gtttgctaat agtatatcaa aaaaatcttt ataggcttgt
     5221 atcgaagttt catctgtaat aaagctctta ttggcattaa tgagaaatgt ttctggatta
     5281 tccattttgg ctaggctggc agttaaatct tgtgtgcttg tagatgcacc attatctttc
     5341 atcacagaat cgtgcgtata gtcaacatct gtgagttttg ggtctggttt ggctgcgact
     5401 tctgaacttg ttcggaaatc aactatatga gacaaatcgt atgtatttac gagtttcttt
     5461 ttatccgaat cacttaagtt agcgagttcg gcacttctaa tgagtttatg tggcttgata
     5521 gttagtccat ccgttgtttt gtatccgcct aagtcccgga catttacagc accttctaat
     5581 ttaatttggc ttcctggttt gactgtttgc tcggttttaa cgtttgcctc cgctttttct
     5641 tctgactgcg ctccgcatcc tcctaatagt aaagtcgcgc ttagcacccc tgcccctgtt
     5701 acttttaccc aatgtttcat tctttctcct ccttttgtaa gcttcttgta cattatagca
     5761 acgcaatttg ttggttgaat gaagggtttg taaagaaatg attttaggga tgttaaggta
     5821 tgaaaaaaag ccaaaacccg gaatgggttt tgacttttag aattaaaatg gcattttgaa
     5881 attgccgaat ggatttttgc cttttttgcc tttgccgcca ccagtcattt gcttcatcat
     5941 ttttttcatt tcaccaaatt gttttaggag acggttaatt tcttgaaccg gacgtccgct
     6001 accacgtgca atccgttttc ttctacttgc attgatgata tctggattgt ctttttcatt
     6061 tttggtcatt gacttgataa ttgcttcaat atgacctagt tgtttatcat cgacgttcat
     6121 gttgtcgagg cctttcattt tgtttgcctc tggcatcatt ttaagtagtt catctagtgg
     6181 tcccatttgt tttacttgtt gtaactgttc taagaagtca tctagcgtca tgctgttgtc
     6241 tttcattttt tgttccatag ctttcatttt ttctgtatct acatcggttt gcgctttttc
     6301 aatcagggaa agcacatcgc ccatgccgag aattctggaa gccatacgat ctggatggaa
     6361 agtttctaga gcttccattt tttcaccagt cgcgataaat ttaattggtt tgccagtgac
     6421 ggaacgaatc gaaagcgctg caccaccacg tgtatcaccg tctaatttgg ttagcacgac
     6481 acctgtaatt tctaattgtt cgttgaagct ttgcgccacg ttgacagcat cttgcccagt
     6541 catggaatcg acaacaagca ggatttcggt tggcgttgca atttctttca cttgttttaa
     6601 ctcatccatt agcgtttcgt caatatgaag acgacccgct gtatcgataa taacataatc
     6661 taaatgttct tcttttgctt tagcaatagc ttgtttggcg atttctaccg ggcttacttg
     6721 gtctcctaga gaaaataccg gcatatctaa ttgcttgcca agtgtttcta attgtttgat
     6781 tgcggcaggt cggtaaatat ctgctgcgac aagtaatggt ttgcggttat attttttgcg
     6841 taataaatta gcaagtttgc cggaagtcgt tgttttacca gccccttgta aacctaccat
     6901 cataatcacg gttggtgggc ggtccgctgt tccgattttg ctttcttctc cgcccattaa
     6961 gcttgttagt tcttcttgaa cgattttgat aacttgttgg ccgggtgtta ggcttttcat
     7021 aacgtccgcg ccgacagcac gttcgcttac tgttttaata aattgtttaa cgactttaaa
     7081 gttaacatcg gcttcaagta gagcaagacg aacttcacgc atcatttctt ttacgtcagc
     7141 ttcgtttact ttccctttgc cgcgaatttt gttcattgtt tcttggagtc ttccagctag
     7201 tccttcaaat gccatgattc tggcctccta atcgatattt ttaagctgtt cgagcgtatc
     7261 tttcacttgc tcgtccagaa aattcttctt ggttaattgt gcttctaatt gactaaaaag
     7321 tttttctcgt tgttggtatt tttttagcat ccctagtttt tcttcgtatt tttctaggct
     7381 ttcttcggtt cttttaatat tatcataaat ggcttgtcta ctcacttcaa attcttcagc
     7441 aatttcgcct agcgagtaat catctagata ataaaaagaa acataggctt tttgttttgt
     7501 tgttagtaat tcctggtaaa aatcaaataa taaattcata cggtttgtct tctcaaacaa
     7561 ggcatttcac ctctctcctt ttaaaggata cggggaaatc gcgggaatgt caaggaaggt
     7621 taaacaaaag agaaaaaagc cagaatgacg agaatcattc ggctttctct gattattttt
     7681 cgttatcaac catatcagca aataagccat acacatattc atttgcatca aaggcttgta
     7741 ggtcgtccat ttgttcccca agaccgacga atttcactgg aatatctagt tcattgcgaa
     7801 tggcgataac aataccaccc ttggcagttc cgtccagttt tgtgaggata atgcctgtta
     7861 cgtcggttgt ttctttaaat tgttttgctt gaacgaaagc attttggcca gttgtagcat
     7921 caagtactag taaaacttcg tgcggcgcat taggaatttc acgcgtaatg acacgtttta
     7981 ctttttctaa ttcgttcatt agattgactt tgttttgtaa acggccagct gtatcgcaaa
     8041 gtaaaacgtc cgctttgcgt gcttttgctg cttgaacggc atcaaacatc accgctgcag
     8101 ggtcgcttcc ctcggcttgt ttaataacat cgacgccggt acgctcgccc cagacttcta
     8161 attgatcaat ggcaccagca cggaatgtat cgccagcagc taacatcact tttttacctt
     8221 cttgtttaaa gcgatgagcc atttttccga tggaggttgt tttaccaacc ccattcacac
     8281 caacaaacaa gataacggtt agcccgtctt cttcgatatg aagtgcttcg tcttcttttt
     8341 cgtctccttg gtaaatctcg actaattttt cgactatcac ttcttgtacg tcttttggat
     8401 cactgatgtt tctaagttga acttcacggc gtagcgtatc gactagttcc atgacagttt
     8461 caaaaccaac gtctgctccg ataaggattt cttctagttc ttcaaagaaa tcttcgtcga
     8521 ctttacgata gcgagcaacc atttcgttaa tttttccgga aaagttgccg cgtgttttgg
     8581 ataagccatc tttaaatttt ccagaaacag aatcagtttg ctgagttatt ttatctttta
     8641 attttttaaa aaaggtcatt ttgtttactc cttttattta atgagttcag ctgtttcttc
     8701 taaacgaact gatactagtt tggagacgcc ggactcttgc atggtgacgc cgtataatac
     8761 gtcggcttct tccattgttc ctttacggtg tgtgatgacg atgaactgcg tgccggactc
     8821 gaattgcttt aagtaacggc tgaatcgtgt aacattggct tcatctaaag ccgcctctac
     8881 ttcatccaaa atacagaatg gtactgggcg aacgcgaatg atagcaaata ataatgcaat
     8941 cgccgttagc gcacgttctc cgccagaacg aagcgatagg ttttgtaatt ttttcccagg
     9001 tggttgaacg acgatatcaa tcccggttgt taggagattt tctggatcaa ggagcaccag
     9061 ttccgcgcta cctccaccaa atagctcagg gaaaacaatc gcaaattcgg ttttaattgc
     9121 ttcaaaactt tcactaaaac gaattttcat ttcttcgtcc atttcgtcca tgactttaaa
     9181 aagggtttct tttgcggcaa gtaagtccgc ttgttgcctg tttaggaagt caaaacgttc
     9241 ttggatacgc tcaaattctt cgatggcacc aatattgacg atacctagtt catcaataga
     9301 acgttttaat aagcgaactt tcgaacgagc ttgttcggta tttacttctg gcaagatttt
     9361 ttcttcggct tgctctggtg ttagtaagta agcttcttgc aaacgatcaa ttcggttatt
     9421 aatatctact tctaaacgac cgatgcttat ttctgcatta tttttttgct ccacgtaaaa
     9481 actgatttga ttattttttt gtgttaattc ggcttctaat agttctaatt tttcttgtag
     9541 ttcagcacga gtttgtcttg tttgcgcaag tttttcgctt gtttcagcct tatctttgcg
     9601 cagttcttca atggattttc tagctgattc ttcgcttgta tgaacgctag ttaagttggt
     9661 ttttaaggaa gctagttttt gttcagccgc ttctttttgt tcgtaatttt catgtagcgt
     9721 tgtcgttact cgctcgacgg cttctgtagc agattgaagt tgctctcgtt tagcggcgat
     9781 ttgcgctttt aaggatgaca gactttctaa atctgctgca cgtttgcttt ctagtgcttt
     9841 gcttgaactt gtcatcgctt tgatttcttc atcggttgct tcgatttgtt ttgcgatttc
     9901 gacttgttca tgtagtaaag tttcttttcg ctccagtagt ttgtttaatt cttcgctacc
     9961 gtctgctttt tcaatatcgt atagttgtag ttgtttattg aagcgctcta gattctcagt
    10021 ttctcggtct agttttccaa gtaattcttt ttcttgtaaa cgtaaatttt caccgattcc
    10081 tcgtgtttct tcgagttctt cacgtttttt cgccatgcta tctttagcta gttgaaccgc
    10141 agattccatt tcacgagtgg cttcgtttaa ctcggtaatt ttctctgcta attggcctaa
    10201 ctcatgtttt ctcgttaaaa tagacgattt tccgcctttg gttgctccac cagtcatcga
    10261 accaccggca ttcacgacgt caccttctag tgtcacaatg cgatacctaa agttgactaa
    10321 gcgagcgagc gtattcgccc cttttaaatc tttcgccaaa atcgttgtcc ctagagcatt
    10381 caaaataacc ggagaaactt tttcatcaaa agaaatgact tcacttgcaa gtgcgataaa
    10441 agcaggttgg ttgcttaaag cgtttttcgt tgcagctgga agttcgcgag gttgaatagt
    10501 cgaaagtggt aagaaagttg cgcggccact tttcgttttc ttcaagaaac tgatggcttc
    10561 acgagcaacg cggtcatctt ctacgacaac gttctgcgca cttgccccaa gcgctgtttc
    10621 catggcttgt tggtacttcg cgggtatttc tacgagttct actaacgcac ctaaaatccc
    10681 tggaatttct tttttcgctt ttaagacttc ccggacacct tggaaaaagc cagcataatc
    10741 atccgccaac tcctctaatg tttccttccg cgatttcatt tgttgcactg tttcataatg
    10801 tttataaagc gcacgttctt gcgttccaaa aacagcttct tgtttcgcta aagtttgctg
    10861 tacttcacgg taaatttcca tttgttccgt aagctcactt tggatttttg ttaaatgtgt
    10921 tttggttgtt tctatttgag cgagcatatc ttttctatca tcgatatgat ggctattttc
    10981 taaatctaac ttgtcaattc gactcgtgat ctgaccgatt tggcgctcaa tataacctaa
    11041 atcattatta attgtcgttt gcgtgtggcg cagatcaata taatcacttt tgcggttttc
    11101 gattgcttct tcggataaat catcgtattt ggcaagtgtt acttctagct cttttttcgc
    11161 tttgaccgca atttcaagtg ctgtttcttt ttcgagtttt gagctactta gaacttcttt
    11221 ttgctcttcc aaggcagtaa ttttttccgt aattgccgcc agtgtttctg cgtaaacttg
    11281 ttcattttcg ctactgtgct ttttacgttc taattggaga tttcgctctc cttctagttg
    11341 ttccagtttt tccgtttcaa ctaaaagacg ttcttgtaaa ttatcaagcg caatatctgt
    11401 ttcattcagt gcatgttttt cgcgtgaaat aaccgcttct tcggcatgta attcttcgcg
    11461 tagcttaatt aaaaccgttt gattttcacc aaattcttta cgaacttcgg ctagtttttc
    11521 tgttaaggaa ctgatttcgc tcgcgagtaa agtcacttcg tatttttcta gttcttcttg
    11581 ttggaataaa taatctttcg caatagaagc ttgcatttca agcggctcca attgtccttc
    11641 taattcgtat aaaatatctt gtactcggtt taaattttct tcggtttcaa ataatttatt
    11701 ttctgcttgt tttttacggt gtttatattt taatacgccg gctgcttctt caaaaatcga
    11761 gcgacgttct tctggtttgc tgttcagaat ttcatcgatt ttcccttgcg aaataatcga
    11821 aaaagactct cttccaagtc cagagtccat aaataaatcg acaatatctt tcagtcgaca
    11881 attttcttta ttaattaaaa actcgctatc accattacgg taaatacgtc tagtaacagc
    11941 tacttcgcta taatcaagtg gtaaaaaatg gtcttcattt tcgaggataa gtgacacttc
    12001 cgcaaaatta attggtttcc gtgtatcact tccagcaaaa ataacatcac ccattcggcc
    12061 accacggagc gatttagcgg actgctcacc aagtacccag cggattgctt ctgtaatatt
    12121 acttttcccg ctgccatttg gccctacaac tgcagtcatg ccgggcacga aatctatcgc
    12181 aactttgtca gcaaaggatt taaagccatt catttctaat cgttttaata acatgtccgg
    12241 acacctccat ttttgtttat ctgtgtgtta gttggtttat agcaaattgt gccgcacttt
    12301 gttctgcttg tttttttgtt ctgccgctgc cttttccgag tacttgtccg ttaacaatta
    12361 cttgggcatc gaatgcttta ttgtgcgctg gtcctgtttc gccaaggata tcatattcga
    12421 tcaagacatc acggtcccgt tgaacaattt cttgcagttg cgttttataa tccactgttt
    12481 gtagatatgc ccctgcatca atttttggaa aaataacacg ttctaaaaat gtcacaactt
    12541 tgtcaatccc attatctaaa taaagcgcgc cgataaaaga ttcaaataca tccgccagaa
    12601 gtgccggacg agttcttcca ccggcttttt cttccccttt accaagtcgt acgtatttag
    12661 aaaaatgtac tgcttctgca aactcgacta aagaaggctc acaaacaatt gctgcgcgca
    12721 tttttgtcat gtgtccttct gccatatctg gatatttgtt aaatagataa ttcgatacag
    12781 tgagttcaag gactgcatca ccaagaaatt ctaagcgttc attatctttc acattttccc
    12841 ggcggtgttc gttcacatat gaggaatgtg tgaatgcttg ttttaataat tcaacatctt
    12901 taaaatcgaa tccaacgctt tcttgtaact cttcccattg attcatttca cttgctcctc
    12961 tctttaataa gcaagttcat tttctaaaca gccactagca aaaagctgct tagaaaatga
    13021 accaacaaaa tctcgtgacc ttgaaaaaga ggccacctgc gctacttgtc tcgcgtgcgg
    13081 aagttaccac agcaaagata agtaacacgg gcaccctcat ttatccggtc acataaagtt
    13141 ttatgcgttc gcctctatgt acttcactgc atcaccaact gtgttaatgt tttcagcgtc
    13201 gccatcagag atttcaactc cgaactcgtc ttcaagttcc attactaatt caacaacatc
    13261 tagagaatct gcacctagat cttctttgaa ggaagcttct aaagttactt tggattcctc
    13321 gacacctaaa cggtcgacga tgatttttgt aactttttct aatacttctg ccatttttca
    13381 cttcacctcc ctccaagtat tatataggat tatttctcct acgtaaacaa aaatatttaa
    13441 agtaatgcga gccaattaaa ttcgcattca ttaaccaatt ttacatcacc attccgccat
    13501 caacagatag tgtttgacca gtaatatact tcgaagcatc gctcgctagg aaaagaactg
    13561 catttgcaat atcttccgtt gttccataag caccaagcgg aatttgcgct aacattgctt
    13621 cttttgtttt ttcatctaat ttgtcggtca tatctgttgt aatgaaacca ggagcaacag
    13681 catttacgtt aataccacgg ggcgcaagtt ctcgagcagt tgtttttgtt aaaccgataa
    13741 cgcccgcttt acttgctacg taatttgctt gacctgcatt accaatcaaa ccaacaacag
    13801 atgccatgtt gataatttta cctgcgcgtt gtttcatcat tgtacggctt actgcttttg
    13861 tacaaaggaa agttcccttt aggttgatat taattacgtc atcccattcg tcttctttca
    13921 tacgcattaa taagttatca cgtgtaattc ccgcattatt cacaagaatg tccacacgac
    13981 caaagcgttc gattgcttgt ttgaaaaagg catctacatc ttcagcaatg gctacgtttg
    14041 ctttcattgc ttctacttca acaccatgtt cagcaacgag ttttgctgtt tcttctgcag
    14101 cttctgggct accattgtaa ttgaagaaaa tatttgcgcc ttctttggct aatttaatgg
    14161 caatgtcacg tccaattccg cgtgatccac ctgttactac tgctactttt ccttgtaaag
    14221 tcattaatta ttctcctttc aatgtcgctg caacgctttt cactgattca gcgtcacctg
    14281 ctgacagtac agttacatca cgattaattt ttttaattaa gcctactaag acttttccag
    14341 aaccaatttc gacaaacgta tctacgccgt ttttaattaa ttcttcgacg atatcttccc
    14401 ataatactgg agaatagatt tgcttgatta gtttatcgct aatttcggat ttatccgtag
    14461 tttctttagc gtccacgtta ttaaccactg gaatctgacc atcagaaatt ttaacctctg
    14521 ctaaaacatc acggaaagca agtgcggctg gttccattaa gctagagtgg aaaggtccgc
    14581 taacagcaag tggtaatacg cgttttgcgc cactttcttt tgcttttccg cctgcttttt
    14641 caacgccagc tgttgttcca gaaataacga tttgtcctgg gcagttaagg ttagcaagtt
    14701 gtactgcatc gccttcttta gttacttctt cggtgattgt ttttaatgtt tcccggtcta
    14761 caccaagaac tgcagccatt gcgccagcac catttggtac agctgcttcc attaattcac
    14821 cgcgcttacg tacaaggtaa atcgcatcac ttgcttctaa aaatccgcca gcaacaagcg
    14881 cactatattc accaaggcta tgtcccgcta cgtaatcagc tttcacacca tatgtttcta
    14941 aagcgcgtaa aatagcaaca cttgtggaaa ctaaagctgg ttgtgcgttt tcggatttcg
    15001 ttaataattc aattggacct tctgtaataa tttctgtgat tgaaaacccg agtctttcgt
    15061 cagcatcatc atagattttt tttgcttcag gatattctgc tgctacatct tgtcccatgc
    15121 caattttttg tgctccttga ccgggaaata caaatgcaat tttagtcatt agattctgtt
    15181 cctcctactt ttactttgtc tacttctgct ttaattgttt cgaccacttg tttttcaacc
    15241 atttcacgta cttgacggat tgtggtgaaa ataccattcg cattggatga accgtgggct
    15301 tttacaactg gagcttgaac accgaacaaa caagcaccgc catattcgct ataatccatt
    15361 tttgctttta aagccattaa atcttttttc aagaagcttg ctgcgacttt atttttaaag
    15421 ccattaagca aactcatttt tagcatactt aggaaagcgg cgcctgttcc ttcgatggac
    15481 ttaagtacca tattaccagt aaatccgtcg gttacaacaa catctgctac atccattaat
    15541 aaatcacgcg cttcgatgtt gccgataaat tcgtaagcgt cttgattttt cataagttcg
    15601 aatgattttt ttgttaaatc atttcctttt gtttcttctg ttccaatgtt taaaagcgct
    15661 acgcgaggac gatcaatttt acgcactttt tctgcgtaaa ccgagcccat taaaccaaat
    15721 tgtaataaat gttctggttt tgcttccgca tttgctccta aatcaagcat aacaaagcct
    15781 tttcctgtca cggttggtag tgtaggtgct agtgctggac ggtcgattcc tttgatacga
    15841 ccaataacaa acaatccagt agacattaaa gcccctgtgt ttccagctga aatacaagca
    15901 tctgcttctc cgtcttttac cgcttgggca gcaagtacca tagaagcttt tttcttccgt
    15961 tttacagcgc gaactggttc gtcatcactt tcaatttttt catcggtatg tataattttt
    16021 acgcgggttt tatcagttaa atattcattt atttttgttt cgtctccaaa aagaagaatt
    16081 tcaacatctt tatattgggc cacagctttc atcacaccta aaacaatttc ttttggtgca
    16141 tgatctccac ccatcgcatc tacagcaatt ttcattatac gtcagtcctt tattttcatt
    16201 tttgcgttgc gtgatacatt tcaaatttgc ctttaagtac aatttcatct ccaacatagc
    16261 ttttcacgtc tacgattgta atagctctgt tgtctgttgc cggacgtact tttgcttttg
    16321 cgatgatgcg ttctccttcg tttacagaac gaacaaagcg aacggttgct tgtgttgtta
    16381 gagctatttc atttgggatg acggcggttg ctaaggaatt agcttgggca aacaaatgat
    16441 gcccacgagc gattttattt cgtttaaaaa catgctcact acgcacatca aaaatcgaaa
    16501 tagcgctctt gctaagttga atatcaataa tttcaccaat cacttcatcg atgggaaggc
    16561 tttttactgc atcggcataa ttgacactcg caacatgttt gattcgctct ctgagttcgg
    16621 ggatggaaag tgctactcta tctagacgaa tagtttgcac actgacccca aatttttctg
    16681 caagctgctc atctgttatg aaaggatttt cttcaatcgc aacttgaagt ttcatttgac
    16741 gatccttttt agaatatttt ttcatgcacg tatcctcatc tctttttttg tgaaaggtat
    16801 taataccagc tactaaacag taggtaaaaa aaggaagtta cctctgtagg ataacattca
    16861 gaacttcctt tgtatttatt ggtactttaa tatgttatta aaaatcaagc caagttgcaa
    16921 gtttttttaa agattgttac ataggcttaa tctagttttt gctccgtgaa gacgccttct
    16981 tcctccagaa gtgctactaa tttttcgtag tttttgttct ctaacatatc ttcttcaaag
    17041 atcatgtgaa cggcatcttg gcgggcgatc tccagtaccc ggtaatcgtg aaccatatct
    17101 gctactttga attctggaac accactttgt tttctgccga agaaatctcc tgggccacga
    17161 agttctaggt cgcgttcgct gacaacgaag ccatcgtttg tttctgacat aatcatcata
    17221 cgttctttgc cgacttcggt ttttgggtca gcaattaaaa tacagtaaga ctgatctgct
    17281 ccgcgcccaa ctcggccccg aagttgatgc aactgagcta aaccaaaacg gtcggcatcg
    17341 taaatgacca tcatggtagc gtttggcacg tttacaccaa cttccactac tgtggtcgaa
    17401 acaaggcaat caattttttt attattaaag tcgcgcataa tttgctcttt atctgctggt
    17461 aatagtttac cgtgcattag acctggaata tatttagtgc cccatttatt ttgtagaatg
    17521 ttgaaaacgt ctatcgcatt ttgcacatct agtttttcag attctccaat tagcggacaa
    17581 atgatgtaga cttggtggcc tttgtcgatt tctttttcca taaaaccgat aacgcgatca
    17641 agcatttgat gttttaccca gtaagtttca atttcttttc gaccagctgg gagttcatcg
    17701 ataatcgata catccatttc gccaaacgct gtaatggcaa gcgttctagg aattggggtt
    17761 gcggtcataa ataaaacatc cggatattcc cctttttcac gaagaacacg acgctgcgct
    17821 acgccaaatc gatgttgctc gtcagtaata actaaaccta ggcgatgata aattacttcg
    17881 tcttgaatta atgcatgcgt tccgattaaa acatcaatgg agccattttc aagcattgct
    17941 agtaattctc tgcgctgttt gcctttcaca ctactcgtta gtaagccaac tgtaatatca
    18001 aaaggttgca acagctctac taaggaattc gcatgttgct cggctaaaat ttcggttggc
    18061 accatgagtg cgctttggaa gccacttttg gcagctgcat acatggcaat agatgctaca
    18121 actgttttac ccgatcccac gtctccttgt agcaaacgat tcatatgaaa gtgtgataac
    18181 atatcaccgc aaatttcatt gactactcgt ttttgtgctt ttgttagtgg aaatggcaag
    18241 gaatcaatgt aatggcgcaa atcttctaca tcgtaattaa tcgaaattcc acctgatttc
    18301 tcgcgttcaa ttttacggaa aaactgcatt ttcaattgga ataacaagaa ttcttcgtag
    18361 accattcggc gcctagcttg tttcaattcc tcattatttt taggaaaatg cagaatgcgc
    18421 actgcttcta ggcgatccat taattgatac ttttctaata aattgcttgg aataacttct
    18481 tctatatctt gactataact atcaaaagca agtctcgtat atttttgcat tgttttattg
    18541 cgtagcgttc cttttagacg gtaaacgcct tctagttctt cttcactttc gacagcgcct
    18601 atttttattt tgctggctgt aacttgggcg cggctcttat cccatttgcc agagattgtc
    18661 actgtttcgc caacacttat tttacttttt aaatagggtt ggttgaaaaa atcgattttg
    18721 atgacttgcc cttcagttga gacgcggaaa gagagcttgg attttttgcg accgtagaaa
    18781 gcaacggttg cctctgttag gacttcgcct tgaatggtaa tccgttcttc atgcgccact
    18841 tctgataaat cccgcaaccg ataatcctca tagcgatacg ggaagttcca aagcaaatca
    18901 tgcacggtgg ataaacctaa ctcttttaac gttttcgctg tttcttcgcc aattcctttg
    18961 atttcagttg tcgggattcg tttaagttca ctcacgctta tcttctggcg acagtccaaa
    19021 aatcttccgc tgaattgcac gtccagtcgg tgtagccgcc aatcctcctt ctgccgtttc
    19081 tcttaaagag cttggcattt gtaagcctac gcggtgcatt gcttcaatta cttcatcaca
    19141 tggaatgcgg ctcttaatac ctgcgagcgc catatctgct gaaataattg cttgcgagga
    19201 accaagggca ttacgtttaa cacatggaac ttctacaagc cctgctacag gatcacacac
    19261 aagtccaagc atatttttca ttgtcatagc catcgcgtgt gctgattgtt ctggcgtccc
    19321 accggctgct gctacaatcg ccgctgaagc catcgcactt gctgagccaa tttctgcctg
    19381 acagccacca gccgctccac ttataaaagc attattcgca acaacatacc caaaggcacc
    19441 tgctgtgaat aaaaagttca ccatatcctc acgcgacatt tctagacgat cttttaagga
    19501 aaaaagtacg cccggtacaa cccccgcgct tcctgccgtt ggtgttgcgc aaataacgcc
    19561 catcgaagca ttaacttcat tcgtcgcgat tgcttttgct acagaatcaa gtaacacttc
    19621 gcctgataag aagtttcctt ttttgatata gtcttgcatt aggacggcat ctccgcctgt
    19681 taagccagtt gtagaagtaa ctcccgtctc accttcacga atagcttctt ccataatatc
    19741 taaattccgt tccatcgcag ctgttatttc ttcccgcggt aaaccagaaa tattcatttc
    19801 acgcttgatc ataatttcag caatagttaa gttctcgcgt tcagcgatat ctactaattc
    19861 tgctacagtt ctaaacattg tccacactca ctttctttac cctttaccaa catacctgat
    19921 ttacaactca aaataaagcc aaatgcacgt tttgtttacg cacatttggc tttacacaaa
    19981 tcgagcgaaa gccaccgatt tactagaaaa ctactaaatc atgacacttg ctacttgata
    20041 aatccctggt aattcagcaa ttttgctaat taaagcttgt tcaacttgtt ggtctacttc
    20101 aatgaccatt aacgcttcat cgccttttac tttacgggac actttcattt gtccgatatt
    20161 gattttatgg tcggcaatca cggaagatac tgcagcaatc gcgccaaatt tgtcttgatg
    20221 taaaataagg atagctggag cagttccagt aaattctagt tcaaattcgt ttaagcgaat
    20281 aatctctact tttccgccac caatggatgc accaattaat gtcatttgtt gcataccatg
    20341 ttttaatact agctttaccg tatttggatg aggtggctct tctacttctt cgataaactg
    20401 aatgcgcatg ccccactctt cagcaagctt cggagattct ttcatgcgcg gatcatctgg
    20461 ctcaaagccg agcaatccgc caatcaaagc tacatcagta ccatgacctt tataggtttt
    20521 ggcaaaagaa ccatataaat gaatatctac ttgggatggt tgttcattaa aaacagctcg
    20581 tgcaatggca ccaatacgac tagcgccggc agtatgagaa cttgacggac caatcattac
    20641 aggaccaata atatcaaata cgctattaaa tttcactaaa atcatccttt cttctattca
    20701 tttacagagg cgtctttatt ctacagcaaa aatatacgga taaactggtt ggtcgccttc
    20761 gtgaatttct acttcgacat cagggaatgc ttctgttact ttatcagcaa gcgtttctgc
    20821 ttttgaagta tctgcatctt caccaacaat gatagtaatg atttcgctat catcatcaag
    20881 tagtttttcc agtgtttcgt aagcggcttc ttctaatgtt gcacaactaa ctttgatttt
    20941 gccttcaacc ataccgatga agctgtcttt tttgatttcg acaccttcta ctgttgtatc
    21001 acgtacagct gtcgttactt ggccacttgc tacgtcttca attgctgctt tcattgcttc
    21061 tgcattagct aggaaatctt gatctgcttg gaatgaaaga acggcagtaa gtccttgtgg
    21121 aattgttttt gtagggatga tttgaacttt atcatctcct agaatttgtg ccgcttgttc
    21181 cgcagccatt tggatatttt tattatttgg aagaacaaaa acttgttctg catttgctga
    21241 ttcaattgct tttacgatat cttctgtact tggattcatt gtttgaccac ctgaaagaac
    21301 aacagacact cccatgctct caaatagttt cttcaatcct tctccagctg aaacagtaac
    21361 aataccataa gccgcttttt cttttgctgg cactttgtca tcaccaacaa tctcagtatg
    21421 ctgttcgcgc atattttcca ctttcatttt aagtagacta ccgtattgct gaccgtagtt
    21481 tagtacttca ccaggatgtt ccacatggac atgtactttt actacttcat cgtccgcagc
    21541 tactagtaga gaatccccca gtttacttaa atcttgacgg aactgttctt cgtcaaaagg
    21601 tttttgaccg ggtttgtttt cgttgatttt cacgataatt tcggtacagt aaccaaaatg
    21661 aatatcttcc gttgacataa agtcttgcac atgacgatga tgttcggcat taattagctc
    21721 acccatagat gccatatagt caggagcttc agccattttg ccagttagtg cgccataaaa
    21781 tccttcataa ataatgataa gaccttgtcc accactatcg acaacaccaa cttcttttaa
    21841 aactggaagt aaatctggtg ttttttctaa tgcgactttc ccttgtttta aaattgcttc
    21901 cattactaat tcgatatctt gatgttcact tgctgctgca actccggctt ttgcggcttc
    21961 acgagctacg gttaggatgg ttccttcgac tggcttcatg acagctttgt aggcagtttc
    22021 cacgccttta acgaaagcac cagcaaattc ttccgcgttt aacgtttctt tattttcaat
    22081 cgctttagaa aatcctcgga aaagttggga taaaataaca ccagagttcc ctcgggcacc
    22141 cattagtaag cctttagcca agtttgctcc aacggcacta attgtttctt tgtcattttt
    22201 cgcaacttct tctgctccac ttgtcatcga tagattcata ttcgttcccg tgtcaccatc
    22261 tggaaccggg aagacattca atgaatctac aaaatcagca ttttttgcta aattctctgc
    22321 tccaagcgct atcattgctg caaatttctc tgagtctaac tgatatatac tcacttacat
    22381 aatcctcctt aagattcctt gattactcgg acaccttgaa cataaatatt cactgattcc
    22441 actgtaatac cgagtgtttt ttctagtgtg tatttgacgc gttcttgaac attatgcgca
    22501 acttcggaaa tttttgttcc aaagctaaca atgatataca tgtcaatatg aataccttct
    22561 tcttcttgtc taactataac acctttagta taattttctc ttcttaaaat atctgtcaaa
    22621 ccatcacgaa tttggtgtct acttgccatt ccaacgatgc caaaattttc ttcggcagct
    22681 ccaccagcga ttgttgcaat aacatcacta gtaatgtcaa ttttgcctag ctttgtgtcg
    22741 atttcaattg ccattctata ttcctcccta cggattatat tctcgttcga ttatttttta
    22801 gtattgattt ttatttaatt ataaagtcgt ccctacctat tttactataa tcagggtcct
    22861 ttggaaagca tatcctccat ttgcctgatt aaagctactt ttatgctgtc aagtaaaaat
    22921 tctttgcact attttcgcat atcctcttgc aaagtatact tgtttatgat aaattattct
    22981 agtgtatgaa aaacaaatgg ataggttatt ttaaataaat tatccgaaga gctctgtaag
    23041 gaggggtaaa ctatggctaa agaatgtgtt attacaggcc gcaaatcacg ttccggtaac
    23101 aaacgttccc acgcaatgaa ctccagcaaa cgtacttgga aagctaactt gcaaaaagta
    23161 cggattctgg ttaacggcaa acctaaaaaa gtttgggtat ctgctcgtgc gcttaaatct
    23221 ggtaaagtgg aacgcgttta attgaaggag aaatcaagtg cagcgacaat tatgtcggtg
    23281 cattttttct ttgccttaaa ataaaaaaat acaggccgag tgcacctgta tttctagtta
    23341 atcattactt tgtgttaata aaatcattcc acttttaaag gaaaattccc ccatttgtcc
    23401 cacaaactca ttacttgata gagctgaacc tactgggtaa gtggcatttt cgagcgggta
    23461 ggcgaatcct tttagtgtca gtcctgtcac gtctttcatc gttgtaaatg cgacatattt
    23521 cttatcaggt agtttttcaa tagtgtagct acctggcata tacattttga tgtagttatg
    23581 acggtcaatc atttctacaa ctggcacagc gcttaaaaat ttcggcttgg tcaacatcat
    23641 tagattcgca agtagatggt ctaagcggcc tcctgttgca ccaaaaatgc gtatcttatc
    23701 tggattttgc tccatcgccc aacttaatcc aatttccgta tctgtttcat ctttttctgc
    23761 aggaaattcg tgtacatctg ctactttggt tttcaaatga gccagttctt ctttagagag
    23821 tgaatcaaaa tctcccatcg caacggtcgg tacaattcca tagtctaaca aacgttttgc
    23881 tccgcggtcc acgccaatcc aactaatctc tgcgctcgta tattgtgcta aatcaggaat
    23941 ttcggacgca ggtccaccaa ccatgatatt aattattttc atacttgagt ccccttcttc
    24001 cctaacaaat aagactggaa cagaggtccc agccctacta ttagtttact cgcctacaat
    24061 ggcacgtaat ttatcaattg gtgtttgacg atttttattt ccataaatgt aactaccagc
    24121 tacaaagaca tttgcgccag catcacggca taattttgct gtttcatgat ccacgccgcc
    24181 atctacttca atttcgatat ctaagccttt ttcatccact attttcttga aagcactaat
    24241 tttttctagt acttctggaa tgaatttttg tccgccaaaa ccaggattta ctgtcataaa
    24301 tagaaccata tccagttcat ttaaaacgtg ttgtaaaaca tcgattggtg tggctggatt
    24361 aagcactgcg ccagctttca caccgtaaga acggattaat tgtaatgtgc gatgaagatg
    24421 cgtacaagct tcgacatgca ccgtaatgta gtctgctccc gcttttgcaa attctggaat
    24481 gtatgtatcc gggttttcaa tcattaaatg aacatcaagt ggtagttttg tttctgggcg
    24541 aatggcttga acaacagcag gaccaaatgt aatatttgga acgaaatgtc cgtccataac
    24601 gtcaatatga atgtagtctg caccgcaatt ttctacttct ttaatatctc ttgcaagatt
    24661 tgcaaagtct gcacttaaaa tcgaaggagc tatttttccc attcttaata cctcggcttt
    24721 ctgtttttta attcttgtaa aatttggata tagtgtttgt agcgaaattc tgctatttca
    24781 tttgcttcaa cagctgtttt tacagcgcaa ttcggctcat tgtcatgcat gcaacctcgg
    24841 aatttacagc cactacgacg atcttccatt tccggaaaac aaaattgtaa tgtttcaggt
    24901 tgcaagtcat cccattcgat tgaactaaag ccaggcgtat cagcgacaaa tccatcgcca
    24961 atcggcatta gttcgacgtg tctcgttgta tgttttccgc gaccgagtgc gttcgaaatt
    25021 tctgctgttt ttaaagttaa atcactattt aagctattta ggagagtcga ctttcctaca
    25081 ccagattgcc cagcgataac tgcagttttc ccactaatat agtctttaat ggcttcttta
    25141 tccggttcat cattggtaac aaaaacatca taaccaatcg cttcgtaaat gtctttgtaa
    25201 acagcaatct gttctttttc agattctgat gccaagtcca ttttactaat gcaaataact
    25261 ggcttgatat cttccttctc aatagctact aaaaaacgat ccgcaagatt cgtggaaaaa
    25321 tccggctcta ctgccgaaaa caccaaaatt gcaatatcaa tgtttgccac gggaggccgc
    25381 acaagggcat tctcccggga cattacatct aaaatgtaac catctgtttt attttctatt
    25441 tgaaattcta catcatcgcc tacaagtgga gaaatatttc gttttctaaa attccctctc
    25501 gctcgacatt gatatacttt tccttccgaa aatacatagt aaaatccgct caacgctttg
    25561 ataatttgtc cttccagcac atttcctccg ttctattttt aatttggata agggactgta
    25621 ccttcatcga ttactttatc atcactgata attttgtagc ctgcgctaga accttcttca
    25681 atttggaaag ttatttctac cgaggtattt tgtgtaatgc tcatttctcg gtaagcgcta
    25741 gtcatgctat ggtctttatc ttgaatgtag atttgaattt tctgtggttg tgggttttct
    25801 tcatcacttg gtgtatatgg gatgttaaat gttttagtta cttctttgac ttgtttttct
    25861 tttggtcctg cagaaatgac aatctcgatt gtatcaccag gattcattgc agttccagct
    25921 gatggggact gcgaaataac ttgtcctttt tcaactgtat ttgaattttc ttccttactt
    25981 gaaactttga gtccaagtgg tgaggcataa tcttctacag ctgttttggt atagccgcgt
    26041 aaatctttaa gcgaaattgg ttctgcacct ttacttacga caaatttcac atcggtagat
    26101 ttagcgacta cgtccgttcc ttgagtcggt gtttggctta taattaagcc tttttcaact
    26161 tcagaactat atgcttcctc cgaagaaata ttattaaacc cttgttcttc aagtaacgct
    26221 tttgtatctg tgtagcttct tcctgtatag tcgtccatag ttattttttt agaaccaatg
    26281 cttacgaata aattgatttt tgttcctttt tctttcattt ctccagcttc tgggtcggta
    26341 ttaattactt tcccttccgc tacttcatca ctattttttt ctgccgtttt acctatgaca
    26401 aagccttctt tttggagtag cgctactgct tggtcttccg ttttaccaga aacatccggc
    26461 acagcgactt catcagggct cttgcctaaa agccacagta gtaaaatacc aatgataaaa
    26521 atgataatga cagaagaaac aatgagagca attttctttt tcttactcat ttttttcttt
    26581 ttcttacctt tgttctcttc gggagcaact tcagccgctg ctacttttcc ttctgggaca
    26641 atcgttttgt caaggttttg catcgtgtct ttcgttgcga tgattggaat tgcttttgta
    26701 tcaccatcat ctgttgggaa aatatattta ggctcattta aacggtcttg atttaaacaa
    26761 gtttgcaagt ctttttccat ttcttccgcg ttttgataac gtaaaaatgg atcttttgcc
    26821 gttgctttaa tgataatatt ttctaagctt tgaggaattt ctggattttg cgctcttgct
    26881 gatggaatat ccgcttgcaa atgcttaata gcaatagaaa ctgcagactc accgtcgaaa
    26941 ggaacttttc cagttaatag ttcatatagc acgattccta gtgaatagat gtctgatttt
    27001 tgagtagcca ttccaccacg tgcttgttct ggtgataagt aatgcaccga acctaacaaa
    27061 gaatttgttt gtgtgatgga tgtttctgaa agtgccatcg caatcccaaa atcagtaatt
    27121 ttcactacgc catcatgatc gattaaaata ttctgtggtt ttaaatcacg atgaataatg
    27181 tgatgttgat gggcaattgc caccgcagaa acgatttgaa gcataatatc tacagcttta
    27241 tcgtaactga ttgggtgatt ttcgtgaata tactgtttta aatccattcc atccacatgt
    27301 tccattacaa tataatgtaa atcattttct tcaccaacat cgtaaacact aacaatatta
    27361 gggtgaacaa ggctcgttgc tgattgagct tcccgttgaa accgacgaat aaggttgctt
    27421 tcatcagcta aatcgattcg taaaattttt actgcaacat ctctatcaag aataatatca
    27481 tgcgccaaat acacattggc cattccgccg ccgcctattg catgtaaaat tttatatcga
    27541 tcacttaatc gcttaccaat catcatgaag catccctccc tttctgcgtc agatctcgtt
    27601 cgactaacag cacagttata ttatcttctc ccccataaga attagctttt gtaataaata
    27661 catctgcttt ttcagaaaga gttcttttac tttttaaaat ttcttccatt tctgtttctg
    27721 gaaccatatt cgttaaacca tcggaacaaa gtagtaacgt atcgctcgtt tgaaaaggga
    27781 caacaaatgt gtccacttct acttttcctt ctacaccaag tgcgcgtaaa agaatatttt
    27841 tccgcggatg attcatggca tcttctttgc tgatttcgcc tgttcgaagg agttcatgta
    27901 ctagtgaatg atcttcggtt agttgacgta agacatgatt ttgaagtaaa taacctctgc
    27961 tatctcctac gttggcaata acgacttgtg actgcgccat aattgctgca acaagtgttg
    28021 ttcccatacc atttaaatcc atttcacttt ccgaataaag aacaatttct ttattgactt
    28081 cttgaattgt tttttgtagc caagtttcaa tttcttctgc ggtcaaaagt gcggtcgttt
    28141 ctttccatgc atcgcttagt agacgcacag ccatttcgct tgccacgtct cctgcccggt
    28201 gaccacccat gccgtctgca acaatgacaa tcggctggtt atctttattt tcaaaaaccc
    28261 cgccgttgtc ttcattatga tgtcttattc tgcctctatc tgttctaaat tctgcatgca
    28321 ttttaaaagc acctcactat ttttcaggac tttacttttc taaggctaga aacgaagaaa
    28381 ccatcgcttc caatatctgt tggtaaaagt tgaataaaat cgtccttctt gatttgcgcc
    28441 aatttttcag ggagtactac aggttctagt gtgaattctg gatgtttttc taagaaagcg
    28501 cgaagaaccg tttcattttc ttccttgtca atggtacaag tactataaac taatatacca
    28561 ttttctttta ctaattggct aacatcatct aaaatcgcta attgaatttc tgctaatttg
    28621 tggatatctt tttctgtttt cgcatatttg atgtctggtt ttctgcgaag aacgccaaag
    28681 ccggagcacg gagcatccac taaaatacgg tcaaatgttt ctggttcaaa catggtactt
    28741 gcggttcttg cgtctaaatg cgccgtacga atattaagta gttgcaatcg tttggcggct
    28801 tgatcaatta gcttggtttt cttttcgtgg atatcgagtg catgaaccat tcccgtgccg
    28861 tgcatttttt ccgcgatatg ggttgttttc ccgcctggtg ccgcacaagc atctaatacc
    28921 gtcaaattgt cttctagttg aagcgcatag gctgcgagca ttgagctttc gtcttgaatg
    28981 ctacatttac cgtctttgta tgcttttgtt tctgctacag atcctttttc aacaagtaac
    29041 gcttcctcga taaattcatt acgtgtcacg gtgattcctt ggtcatttag ttctttgatt
    29101 aattgttcag taggaatttc tgtttggttg acgcggatac tttggtgtgg cgcgacaagg
    29161 aatgctaaac cgatttcacg cagtttttcg ataccatatt gatctgccca cctttttgct
    29221 aaccattctg gcagacttgt ttcaacagcg attttttgca cagggtcttt gatggcatca
    29281 atacttggta cgccttttcg aataacatta cgcaatacgc cgttgacgaa cttagttaca
    29341 ccttggtgtc ctaaatcttt cgcgatgtca ccagcttcat ttaaaatcgc gtgctcagga
    29401 actttatcta aaaaggttaa ttgataaacg gacattctta gtaagttttt cacccaattg
    29461 tcgggttctt tattgagaaa cggtgctaaa tagtaatcaa gtgtaatttt gcgctgtgtt
    29521 gtaccatata ctaattcagt caaaagccct ttatcaagcg gatttaactt ttgttttttt
    29581 aatgcgtcat taattaataa gtggctgtat gattgattat tttcgatttt aatgatgagt
    29641 tctaatgcaa tcgcacgaac tgttttttgt tttttcattt attcaccaaa ccttgtcgac
    29701 ttgcttaaat ttctgccagc tccggtcatg aatgagtgaa catccatctt cggttttcct
    29761 gctggttgga ttactgttgg tacgatgagc gtgccgtcgc ctgctacgat tttaagcgtt
    29821 gttttatctg ctaaaatggc acccggttcg ccgtcctctt ttgtttcttc atatgtttct
    29881 tcataagttg cttcccagat tttaaatggt ttttcttcca gtgttgtata agccactggc
    29941 caaggagaca atcctcgaat ttgattaaag atagtacgtc ctggttttgt ccagtcgatt
    30001 ttttcttgtt ctctagaaat attacgtgca aaggttacct tttcagggtc ttgtgggatt
    30061 gccgttattt ttccagctaa aaagtcgggt aatgtgtcca ttaataattc tgcgcctaat
    30121 ttgcttaatt tatcaaacat ggtgccagta ttatcttcat ctgtgatggg aattttacgc
    30181 tggctaatca tatccccagc atccaatttc tctaccatat acataatcgt aacgcctgtc
    30241 tccgttttcc cgtcaagcag tgcgtagtgt acaggagcac ctccgcgata ctctggtaaa
    30301 agagatgcat gcacattaat cgcaccatgc tttggtgatt caagcaaact atttggtaaa
    30361 atttgtccgt aagctgctgt tacaagtagg tcggcttcta gagcaattag ttcttctaat
    30421 tcgctagatg tccgtaattt ttctggttga taaactggaa tagctagttc taaagcagct
    30481 ttttttactg gcggtggtgt caaaactcgt ttgcgtccaa ctgggcgatc tggctgtgtc
    30541 acaactgcaa ctacatcata tgtgctggct aattgcgcta aaaccggaac agaaaattcc
    30601 ggtgttccca taaaaataat tttagtcatt ggtttgctcc ttttacatta gtacgtaagg
    30661 ctgtacgtca atagttattg ttaaaccttt ttgttggtct ttttgataat gggtaattag
    30721 tgtttttagt tcttttttta agtttggttc gattttatat ttaataatgc actggtagcg
    30781 atatttgttt ttaattctcg tgatggtgct aggaacaggg ccaagaatca cggcatctgg
    30841 accgagcttt cctcgtaaaa actgagccat ttcttgaatg gttcgaatcg ctttcatttc
    30901 attttcatcg ctgacattaa tcatggttaa gtaataaaat ggcgggtagg aacccatttt
    30961 tcgtagctgc atttcgtggt tataaaaacc gatgaaatca tgttttttgg cgaattcaat
    31021 actgtaatgt tctgggttat agctttgaac gatgacttct cctgtccgct catgtcgacc
    31081 tgctcgtcca cttacttgag tgagaagttg gaaagttcgt tccgaagcgc gaaagtctgg
    31141 taaatgaagc attgtgtcag catttaatac gccaactaac gtaatatctg gaaaatctag
    31201 tcctttggca atcatttgtg ttccaagtaa aatatcggct tcgtgattgc ggaagctttt
    31261 gagtaatttt tcatgagcac cttttgttct agtggtatcc acgtccatcc ggatgacgcg
    31321 cgcttctgga attaatttgg tcaaactttc ttctactttt tgtgtaccgg tgccaaaata
    31381 acgaatatgc tcgccctcac agctcggaca tttttgcgga acacgttctt catgtccgca
    31441 gtaatggcat ttcatttgat tgctcgattg atgataggtg agcgaaatat cgcagttcgg
    31501 acattccaca acataaccac aatcacggca catcacaaaa gaagaataac ctcggcgatt
    31561 tagcattaaa actgtttgtt cttttttggc aattcgctct ttgatttttt ctagtaattc
    31621 agtcgaaaat tcggtgcggt tttctttgcg taattcttcg cgcatgtcga caacgctcac
    31681 ttctggcatc gcccgatcat tgacccggct aggaagttcg attaacgtat acacaccttt
    31741 tttcgctcta gcaaaagatt caagggacgg cgtggcgctt ccgagaacta ctggacattg
    31801 atattttgtt gcgcgccaaa tggctacatc tcttgcatga taacgcggat tatcttcttg
    31861 tttgtaactc gcttcgtgct cttcgtcgat aataataatg ccgagatttt caaacggtgc
    31921 aaatacggcg gaacgagccc caacgacaac gcgcgcttct ttgcgttcga ttttgcgcca
    31981 ttcgtcgtat ttttctccgg aagatagcgc actatgtagt accgcgacct cgcttccaaa
    32041 gcggctttta aatcgctcta ccatttgtgg ggtaagggaa atttctggta ctaaaacgat
    32101 ggcttcttta ccctctttta attttgcttc gatggtttgt aaatagattt cggttttccc
    32161 acttccagta accccgtgta ttaggaatgt ttcttgatca gttgctgcgg tgattttctc
    32221 gcacgcagtt tgttgatctg gtaataactg aagcgattca cttttttcaa attggtggtt
    32281 ttcataggga tcacgcgaaa caattttttc ttgaatagaa agtatcccta agtcgactaa
    32341 tttttttatt gtggcatccg ttgtttccgc ctgttttttt aactcggctg ccgtaatttc
    32401 gttgccttca aaagcttgga aaaatgcgag tacacgtgac tgtgctttgg cgtttttcgg
    32461 catatcttct attatttcag ctagttggtg tggtgatttg agacagttaa caacgcgaat
    32521 ttttttactc gtgattttat ttttgacttg gtagactact tccacactac cttctctgac
    32581 ccatttgcca atttgtttga gcaaaccgcg ggcttctgcc actttccagt ctagtgtttc
    32641 gtagccttca aatagctgct ctaattcttc gttttcctca tctaagcgca aaaaatattt
    32701 ttcgtatttt gctcgtagcg cggctggtaa catggcttgg taagcagaca cccggaaact
    32761 cagcgtatct tctgctaacc aatcgcctag ttccatcaat tcttcattta aaacgggggc
    32821 taaatccatc accccgtcaa tgccttttaa ttttgggttt tcttctgttt ctccaagagc
    32881 aatgacaaat ccttgtattt tacgatttcc aaatgggaca cttactcgca tacctggacg
    32941 aataagttct tctaaatctt ctggaatata gtagtcaaat ggacgatcca cttgcatggc
    33001 tggaacgtcc acaattactt tcgcaatatt aatcattcgt tcacttcctt aaaaagttag
    33061 cagtttcttt gatgatatgt tcagcaactt cttttttatc tagtatcggt aacgctttgc
    33121 tagaaccatc tttccggtaa aatgtcacga tatttgtatc accagaaaag cctgctcctg
    33181 ccacactaat attgttagcg acaatcatat cggcattttt ggatgttaat tttttacgtg
    33241 cgtttgcttc tagattttct gtttcagcgg caaagccaat cacgacttgg tctgcagttt
    33301 tgtgttgacc aatttcgagt aaaatatctt tggttcgttt catttcaatg gcaaaatcgc
    33361 ccggctgttt tttaattttt tggtctgata cttttgctgg cgtgtaatcg gcaactgctg
    33421 cggtcatcac gaagatatct tgtgacactt tatgttcatc cacagcttga tacatttctt
    33481 ctgccgattc gacatagatt gcttctacac caggtggtac gggaagtgct ttgcttgtcg
    33541 taacgagcgt cacttttgca ccatgacgag ctgcggattc tgcaatacta aagcccattt
    33601 tgcccgtgga atggttggtg aaatagcgta caggatctaa tttttcgcga gttgcgccgg
    33661 ctgtaactag cacgtttttg tcgcgcaata aatctttatc ttcttgaaaa aattcagcaa
    33721 tacgaagaac gattttttct ggttcttcaa gacgaccgcg accaacgtag ccacaagcta
    33781 agtaaccttc ttctggctcg ataaaacgaa caccgtctgc gtataatcga ttaatattcc
    33841 gaataactgc tgggtgctga atcatgtgga cattcattgc tggcgctacc caaactggtg
    33901 cctctgttgc aagaatggtt gtcgttacca tatcatcagc gattccattt gccattttgc
    33961 caatcacatt cgcggtagct ggtgcgacaa ttactaaatc ggcccaatca gctaaatcga
    34021 tatgtgcgac aacacttgat tttttttcgt caaatgtatc tgtgtataca tcatttttag
    34081 ataatacttg aaacgaaagc ggtggaacaa attcctgagc atgttctgtc atcatcactt
    34141 tgacgtttgc tcctgcttgc gttaatttac ttgtaagtgc gactgcttta taaacagcaa
    34201 tgccaccgga cactgcgagt aagatatttt ttccttgcat tgaaaagtca cctcattttt
    34261 aatataaaaa atcattaatt ctattatacc ttaaattaag acaggacaaa accatgaaga
    34321 aactagattt cagcttattt ttattgcact tgtggctaac aaaaaagccc cgcaggaaag
    34381 cggagcagtt aagcttattt atcgtcgttt tgtaaaacta attttccagc gtgaatttct
    34441 tctaacgctt tcccaacaaa tttgtcggac tggtagctcg gcaatacgcc tttatcattt
    34501 tccagttgca tgtagcgtgc gcgtttagcg gccactgtaa ctagcgaata ttttgagtcg
    34561 atttttaaca ataaattatc aattgatgga tataacatca ttgtaatccc tccaacattt
    34621 ttttgtagcg atgaattact cgctcagttt ttaagtgttc tgtttcgacg atgcctttga
    34681 ttttttgtac ggcgtttgca actacatcat tcaccacagc ataatcataa gacgccatca
    34741 tttcgatttc tttcttcgct gtttccatgc gttcctcgac aacttccatc gattctgtac
    34801 cgcgaccgat aatccggttt ttaagctcag acaaatctgg tggcgttaag aaaatgaaaa
    34861 ttccttctgg catcgctttt cgaacttgca ttgctccttg tacttcaatt tcgagaaaaa
    34921 tatccactcc tgcggctaat ttttcctcga catattcaag cggagtgccg taataattac
    34981 cgacgtactc tgcatattct aacatctttc cgtctttgat agcttgttca aacacttctc
    35041 gtgaacgaaa ataataatcg accccgtctt gttcgccttc acgaggaaga cgcgttgtca
    35101 tggaaataga ataatcaaaa cttgtttccg gatctttaaa aacagcttcc cgaacagttc
    35161 ccttacctac tccagatgga cctgaaagta caattaacag tcctctttct gtcatcattt
    35221 cccctcctgc atatcattcc acattttgca cttgttctcg aattttttca agcgtcgttt
    35281 tcatttctac cacttgttca gtgattttta gagaacttgc tttggagcca atcgtgttga
    35341 cttcgcggtt catctcttga atcagaaaat ccagcttccg cccaattggt tcttcgagta
    35401 aaataatacc ataaaattgc tttaaatgac tctttgttcg ttcgacttct tcgttaatat
    35461 ctgccttttc aagtagcatt gcgacttcgg taagaacgat acttggatca aattggtcgc
    35521 ctacaacgtt ttgtaaacgt gtttcaattt tttcttggta atgtttttct gtatttggaa
    35581 tttcagcttg aatgatctcc aaacttttct ccaatgcggt aagatgttgt ttgaaataaa
    35641 gcagtaattc tgctccttcc atacttctca tctcatccag tcgctcagtt gcgcgggcaa
    35701 gtgtttctaa aactaatcgc tctagttcgc tacttgcttc cacttcttcc tcaatagaaa
    35761 gataggcttg ttcttgcagt aaatcagcca tagttggtaa ttcttgtaat tcatatctag
    35821 cgcttgcttg tttaataaaa cggtaatagc tatctgcgag gtcccagtca atatgtagtt
    35881 cgcgttttgt gatttgctct cccgtgatgg aaaagaaaac ttcgattcta ccacgtttga
    35941 tttgcttact tatgattttt tttaattttc cttctaaata agcaagttgt tttggcatcc
    36001 gaaaaagaaa ttcggagtag cggtggttga ctgcttttaa ttcaatggtt actttgaacg
    36061 cttcaaattc tttcgtcgca cgcccaaatc ccgtcatgct tttcaccatt tggcaagaca
    36121 cctttcataa cttaaagttc cctctaagat tacttgaaat ttgttctgac ttcttattat
    36181 accaaagcta ctccttgcat acaatacatt ttcggaatgt atgttaaaat agaaagtaac
    36241 taactcacaa aggaatgaat aactaatggc gtttgatgca atgtttttaa aagcgatgac
    36301 cgaagaactt gccgaacacg gagaaagtgg acgtattatg aaaatccatc aaccgttctc
    36361 gcatgaactt gttttatata ttcgaaaaaa ccgtgaaaat aaacgtttac tgatctcctc
    36421 gcatccaagc tatgcgcgga ttcagtggac cgatgatatt cccgaaaacc cagcaacccc
    36481 accgatgttt tgtatgttac tgcgaaaata cttagaaggc gcgattattg aatcgattac
    36541 gcaacttcct aatgaacgaa ttttacaatt tagtattcgc ggtaaagatg atatcggtga
    36601 aaatcgtttt tgtgatttat ttgtagaaat tatgggacgg catagtaata tcactcttgt
    36661 cgaccgtgcg aaaaatgtga ttgttgattg tattaaacac gtttcccctg cacaaaatag
    36721 ttaccgaaca ctgcttccgg gagcgactta tgttttacct cctgcaacgg ataaactcca
    36781 cccatttgag gttacttcgg agcagattct ggatagacta gatttctcag cgggtcgaat
    36841 ggataagcaa cttgtacaaa attttgcagg attcagccct ttgcttgctc gggaaatagt
    36901 atttcgtgct gggaacttaa cggcagattc gctagttgcc gcctttttcg aagtaattgg
    36961 gctagtgaac gagcatttag gccatgcagc cgtgccaaac gaatggcgca tccaaaataa
    37021 agaggattac tattttttcc cgctccgcca tgtcgatgca gaaacaaccg aattcgcgaa
    37081 tttaagcacc ctattagacc atttttatat tggtaaagcg cgtcgtgatc gtgtccatca
    37141 atttgcacat gatttagaaa aactcttatc caacgaactg gctcgaagca ggctgaaaat
    37201 cgaaaaactc gaaaacactt tgctcgaaac agaaaaagca gatgtttatc gtattcaagg
    37261 tgaacttcta actgccaatc tgcatttaat ggaacgcggg atggaagaaa ttactgtaga
    37321 aaacttttac gatgatatga agaaaatgac gattgcactt gatactagaa aaacaccatc
    37381 cgccaatgcg caaagctact ttagccgcta ccaaaaacta cgtaacgcgg tcgaagtagt
    37441 gaaagagcaa atcgcgctca cgaaagaaga aattacttac ttagagtccg tggaatcaca
    37501 acttgaaaca tctggcccac aagacgtgga agaaatccgc caagaactag ctgaacaagg
    37561 ctatcttcgc tacaaacaga aaaaaggcag ccggaaaaaa gcgactttac ctgctccaga
    37621 aaaatatact tcttcgaccg gcttaacgat tttagtcgga aaaaataata aacaaaatga
    37681 ttatttaacg aataaattag ctaggaataa tgaatactgg ttccatgtaa aagatttgcc
    37741 tggttcgcat gtggtcattc aatcgaatga tccagatgag acatcgatta cagaagccgc
    37801 aatgattgca gcctattatt cgaaagcgcg cctttcagca accgtccccg ttgacggcac
    37861 gctcgtaaaa cacgtgaaga aaccaaatgg tgccaaacct ggttatgtca tttatgataa
    37921 ccaaacgact tacttcgtta cacctgatga aaagcttgtt ttagagttaa aaaattaacg
    37981 gttccttcct ggagccgttt tttctttcta attttagggt agatgtgtac tgactttact
    38041 tttttattgg aaggatgata gaggaatgaa aattttatta attggtgctt ctggtacgct
    38101 tggctctgcg gtgaaagaac gtttggagaa aaaggccgaa gtgattactg ctggtagaca
    38161 tagtggtgat gtgacggtgg atattacgag tgtcgatagc atcaaaaaaa tgtacgaaca
    38221 ggttggaaaa gtagacgcaa ttgtttcagc cacaggaagc gccacttttt ctcctttaac
    38281 agaattaaca cctgagaaaa atgcagtgac gattagtagt aaattaggtg gtcaaattaa
    38341 tctagttttg ctgggcatta actcattgaa tgataatgga agcttcaccc ttactactgg
    38401 cattatgatg gaagatccaa tcgtccaagg ggcttctgct gcgatggcaa atggcgcggt
    38461 tacagctttt gcaaaatctg ctgcgattga aatgccacgt ggaatccgga ttaatacagt
    38521 gagcccgaat atattagaag aatcttggga caaactagaa tcatttttcc aaggtttcgt
    38581 tccagttcca gccgcaaaag tcgctcgtgc gtttgaaaaa agcgtctttg gtgcacaaac
    38641 tggtgaaagt tataaagtat attaatagaa aaagaagctc accgtaacaa aggtgagctt
    38701 ctttttattt tccccagttt tctggatttt tcttccattc ttttaatgtt tccatatctt
    38761 caccagtcac gtaattttca tttaaagcta cttcaattag ctcatcatag ttcgttaatg
    38821 ttactagttt tgtgccagat tcttctagca gttgttttcc tttagcaagt ccatatgtaa
    38881 atatggccgc gattccaact acttccgctc cagcttcttc cagcgcttcc actgctttta
    38941 atgaacttcc accagttgaa atcaaatctt caatgaccac tactttttga cctttagaaa
    39001 ttggtccttc gatttgattc cctttgccgt gttctttagc ttttgatcgg acgtagacca
    39061 ttggtaaatc tagtaaatca ctcacccatg cagcatgtgg aataccagca gttgcggtgc
    39121 ctgcaacaac atctacttca ccaaaggttt gcttgatttt ttcggctaat gacttggcga
    39181 taaactgacg gacttttgga aagcctagcg ttaggcgatt gtcgcaatat ataggggatt
    39241 taattccaga tgcccaagtg aaaggctcat ttggttttaa aaatacagct ttaatttcta
    39301 ataattgttc agctacttgt ttttcgatgc tcatgcattc cactccttta aaacttgatt
    39361 atacgcttct accgggtcgt ttgcgcgcgt gatggaacga ccaacgacaa tgtttgacga
    39421 accaatcaaa cgcgcttttt ctggtgttac gacacgaatt tgatcgtcgg ctgcgtcgct
    39481 tgctaatcgg atgcctggtg ttacacgtaa aaaatcagcg ccattttgtt gtttaatatc
    39541 ttctgcttct agcgcggagc aaacgacgcc gtctaaacca gcttgtttcg ataaattgct
    39601 ataatgcatg acggattcaa gtagacttgt ttttattaat tgttctgttt gcatgtctgt
    39661 ctcacttgta cttgtcagtt gagttacggc aataattttt ggacgtttgc cacttgaaga
    39721 acctatttcc agaccttccc tggcagcttc catcattttc ttcccaccag ccgcatgtac
    39781 attaaccata tctacgccta gttttgccaa gccaatcatc gcacttttga cagtgtttgg
    39841 gatgtcatgc agttttaaat ccaagaagat ttcatgatgt tgttgcttta ttttttcaac
    39901 aatgattgga ccgttgctat aaaaaagttc catgccgact ttcacggata gcgtttctcc
    39961 cgaaaatttg gctaaaaagg tctctacttc ttcgtaagtc tggaaatcta gcgcgataat
    40021 tggtttattc attgatttgc tcgctccttt ttaagttctt gtagggaaga aataccgagt
    40081 tcatccattc gttttggtag ttcgctaatt aatttcggac aaataaatgg gtcggtaaaa
    40141 ttcatcgtgc ctactgcgac tgcatctgct ccggcaatca agaattctaa tacgtcatct
    40201 acagtttgca cgccgcccat gccaatgata gggatattgc ttacctcgcg gacttggtga
    40261 atcatccgaa tagccaccgg tttaatcgct gggccagaaa gtccacctgt tccatttgcg
    40321 atgattggtt ttcttgtttt taaatcaata cgcatgccga gtaaggtatt tatcattgtg
    40381 agtccgtccg caccagcggc ttcaattgct tgcgcgatgg aaacaatatc cgctacattc
    40441 ggtgataatt tcacgtaaac tggcacagtt gcgacatttt tcacggcttt cgttaaacga
    40501 tgcgcaacat ccggatctgt tccaaatgcg atacccccat gtttcacatt gggacaggaa
    40561 atattaagtt cgatggcttt cactgctttc gattccccaa ttctggcgca gacttggaca
    40621 taatcatcct ccgtcgcacc cgccacatta gcgataatcg gtgtttcaaa ttgttctaaa
    40681 aatggcagtt cgtgcgccaa aacatgctct agacctggat tttgtaagcc gattgcattc
    40741 agcatcccgc tcgcggtttc tgctactcgc ggagtgggat tcccaagtct aggttctggc
    40801 gtcacggctt tggccataat cgcaccaagt tcatttaaat catagtattt gctatattct
    40861 tgtccgaagc caaaacatcc tgatgctggc ataatcgggt ttttgagcga taatccagga
    40921 atttctactg ctaatcggtt cataaactca cctcatccgc acgaaatact gggccgtctt
    40981 cgcacacttt aaattgtttt ttcgcatcat ctgcttttgg acaaacacaa gcgtagcaag
    41041 ccccaatacc gcatgccatt cgttcttcta aagaaagata tgttttcgtt tccggaaaac
    41101 tagctttcac ggcctggagc atcgcttttg gtccgcaact atagatgaca tctggttctt
    41161 ctggaaaatt gttcgtgatg tctgtgacga aaccttgtgt tccaagtgag ccgtccaccg
    41221 tcgcaatatg aactgtgcca tatgcattca tttctttttc ataaaaacta tctttcgcag
    41281 attggaatcc atttacaaac gtgacttgta cgccttttcc agctaactct ttaccgagtt
    41341 gatacatagg agggacacca attccacccc cgattaaaag agcggttttt ggtgcaggtg
    41401 tctggtcgat atcgaatcct tttccaagcg gacctaacac atcgatagta tccccttctg
    41461 aaagtttact gaaatctctt gtcccgtcac cttctatccg gtacaacaga atgcatgtct
    41521 ttgcggtttt atcgtaagaa caaatactta tcggtcgtct cataagtaaa tcagaacgac
    41581 tcggtttcag cattaaaaac tgtcccggtg acatatcggc tacacgttcc cctgtcaaaa
    41641 ttaattcgta tactttatct gcaatttcgg tttgctgaat gaccttcatt tccgtctgta
    41701 acacggttcc accccgtttc ttctatttaa acacgtgctt taggttgttt tacttcactg
    41761 gtattcatcg attcgagttc aaaagagcgc gattccagta cacgcaagat tgcttccgct
    41821 gtatcgagcg aggtacagac cggaatacca ttttctacag attcgcggcg aatttggaag
    41881 ccatcacgct caggtcgttt accagtcgtt aatgtgttca ctacgagcgt tacttggcca
    41941 tttcgaatat aatcgatcaa cgtttcttga ttttctccaa tttttttcac ttgtgacact
    42001 ggaatgtctg cttcttctaa cgtgcttgct gttccttttg ttgccataat agtaaagcct
    42061 atgcgattaa atcgtttcgc tagttctacc gcttcttctt tatcgcggtc cgctacagtt
    42121 aaaagtactg tcccgtagtc atgcatcgtt gtcccactcg ccacaaaacc tttgtagagt
    42181 gctttttcga gcgtcacatc tttccccata acttctccgg tcgatttcat ttcaggtcca
    42241 agcgacgtat ccacactacg caatttcgcg aaagagaaca ccggcacttt gacaaaaatt
    42301 tcttgttttt ctggggcaag tcctggcgtg taaccaaggt cgattaagtt ctcccctaag
    42361 ataactcttg tcgccacatt cgccatcgga atttcggtaa ttttacttaa aaatggcgcc
    42421 gtccggcttg agcgcggatt tacttcaata acgaaaactt cttcgccatc tacgacatat
    42481 tggatattca gcattccgat aatgtttaag ccagttgcca gccttgtcgt ataatcgaca
    42541 atcgtatttt tcacttgact gcttaaacgt tgcgctggat atacggcaat cgagtcacct
    42601 gaatgaactc ccgcacgttc gatatgttcc atgataccag ggattaagac gttttcaccg
    42661 tcactgattg catctacttc tacttcttgg ccgcttacgt aacggtctac taaaactggg
    42721 tgttttggat ttacttttac cgcattcgtc atataatgtt ttaatgcttc ttctgattct
    42781 acgatttcca tcgctcgacc accaagtaca taagatgggc gtacaaggac cggatagccg
    42841 atgtctgtcg ctacgttgat tgcttcttct accgatgtgg ccgttttccc agctggttgt
    42901 ggaatttgta gaatttctaa tgctttttca aaggcatcac ggttttctgc gcggtccgta
    42961 tcttctaaac ttgtacctaa aatttttacg ccgcgttttg ctaaaccgtc tgctaaatta
    43021 atcgctgttt gtccaccgaa ttgcacgaca acccctagtg gctgttcgat ctcaataacg
    43081 tgcataacat cctctagcgt caaaggctca aagtaaagtt tgtccgagat actaaagtcg
    43141 gtcgaaacgg tttctgggtt attattaatg ataattgctt catagcctgc ttgttgaatg
    43201 gcccacacgg agtgcaccgt tgcatagtcg aattctaccc cttgcccaat ccgaatcgga
    43261 ccagaaccaa ggacaatcac gctttctttc gctgatcgtg ttgactcatt ttcctcttca
    43321 tatgtgctgt aaaaataagg ggttgtcgat tcaaattccg ctgcacacgt atcaaccatc
    43381 ttgtatactg ggaaaagatt ttgtgctttt cttaagtcat aaatcgcttg ttcatcgaca
    43441 ttccaacaag tggcaaggaa agcgtcagaa aaaccggccc gtttcgcttc tgccaaaatt
    43501 tcttggtttt gcggattttc tttgatacga ttttccagtt cgattgtttt acttaattta
    43561 tataagaaga ataaatctat ctttgttttc gcgtggagtt gttcgattgt ttgacctcgg
    43621 cgcaaagctg ctgctaggaa gaataaacga tcatcttctg ggaagcaaat tttgcgttct
    43681 aatgttgctt cgtcagcatt ttccgcttct tcaagcaaca aatggtcagc gccaatttct
    43741 agggagcgca ctgcttttag aagtgcttct tcccatgaac ggccaattgc catgacttca
    43801 ccagttgctt tcatttgtgt tccaaggcga cgatccgctt gctcaaattt gtcaaaagca
    43861 aagcgtggga ttttcgcaac aacataatct agtgttggtt cgaaatgggc aaaagttgtt
    43921 cctgttactg gatttctcac ttcatccagt gttaagccaa ctgcgatttt agctgcaagt
    43981 ttggcaattg ggtagccggt cgctttggaa gctagcgcag aggaacggct cacacgtggg
    44041 tttacttcga taacatagta attataacta tctggatcaa gtgccagctg aacgttacag
    44101 ccgccttcaa tttctagtgc acggataatt ttcaacgaca catcgcgcaa caattggtat
    44161 tcgcggtcgg aaagcgtttg gcttggtgcg acaacaatcg aatctcctgt atgtatgccg
    44221 actgggtcaa tattttccat gttacaaaca accattgcgt tattgttcgc atcacgcatt
    44281 acttcatatt ccacttcttt aaaaccagcg atactttttt ctagtaaaca ttgtgttact
    44341 ggactcagtt ttagaccact tgtcaccgtt tcaattaatt cttgttcatt gtggcaaatc
    44401 ccgccgccag aaccaccaag cgtatatgcc gggcgcacga taactgggta gccgatacgt
    44461 tcaacaaaag tatacgcttc gtccaaatta tgaataatgt cactttctgg cactggttcc
    44521 cctagttcat tcatcaagtc ccggaaagct tcacggtctt ccgctttttt aatcgccgtt
    44581 aaatctgttc ctaacacttc tacgttacat tcatccaaaa tcccagcagc tgaaagttcc
    44641 atcgccatgt tcaatcccgt ttgtccccca agcgttggca aaatggcgtc cggacgttct
    44701 ttacgaataa tgcgcgatac aaaatcaagc gtaattggtt caatgtaaac tttgtccgcc
    44761 atttctgcat ccgtcataat tgtcgctgga tttgagttca ctaaaactac ccggtaccct
    44821 tcttctttca aactcaggca tgcttgtgtc ccagcataat cgaactctgc tgcttgtcca
    44881 ataacaattg ggccagaacc gattactaga attgttttta tatcgtcacg tttaggcatg
    44941 tagttcaccc tcctctttcc cattcatcat ttccataaat tcatcaaata agtagttgac
    45001 gtcacttggt cctgggtttg cttctgggtg atattgtact gtataggctg gatattcttt
    45061 atgtgccagc ccttctaccg tttcatcatt taattcaatg tgtgttactt ttaaatctgt
    45121 tccaataagt gaatcttttt ctactgcgta accgtggttt tgtgcagtga aatcaacacg
    45181 tccagtggct agttctttca ccggatgatt cgcgccacga tgcccgaatt tcagtttaaa
    45241 tgtatctgct ccgttcgcaa gtgcaaacag ttggtgccct aagcaaattc cgaatagtgg
    45301 gagcttgcct tgaatgccgc gtatcatttc taatgcttct ggcacatctt tcggatcccc
    45361 aggtccattg gataacatca cgccatccgg atgcattgca agaatttctt cggctgttgt
    45421 gttgtaagga acaaccgtca cgtaacagtt acgtttattc agttcccgta aaattgaact
    45481 tttcacacca taatcaacaa gcaccactcg tttaccatct cctgggcttg caaatgcttt
    45541 agcagaggaa acttcatgta cttgatcgac tggcaaacgt acagagcgca agtggtgtag
    45601 caattcctct ttgtttgcag tttctgctgc taaaatgcct tttaacgttc cttctttacg
    45661 aattagtttc gttagtttac gcgtatcaat tcccgcgatt cccgggatgc ctttttcttt
    45721 caaaaaatca tctaaagtaa tttgattgcg ccagttggaa gggaattctg cagcttcacg
    45781 aaccacaacc cctttcacag caggattgat agattcaaaa tcgtcgcggt tcacaccgta
    45841 atttccaaca agtggatacg taaaagtaat aatttgacca tagtacgaag ggtcagtgat
    45901 tgtttcttgg tagccagtca ttccagtatt gaagacaact tcaccaatgg tttctttttc
    45961 actaccaatc gcatcaccga taaaataatt gccatcttct agcattaaaa ttcgctttgt
    46021 catttaattt ccccctcatt gtatacaagt gtgccttccg aaaacgttgc tactggccat
    46081 ccaatacacg tttctcctac aaatggtgtg ttttttcctt ttgaataaaa agtagctggg
    46141 tcaatattcg cttctttttc taaatcaagt acgacgatat ctgctacgct gccttcttct
    46201 aatttcccgt atgggagttt aaagcattcc gctggtttta cagtcatcca gtcgattagc
    46261 tgttttaatg tccattcgtt cgttttaaca aaatgggtat atagtaatgg gaatgccgtt
    46321 tctagaccta caattccgaa agcagcttgc tccatcggta catttttttc ttccgctgcg
    46381 tgtggagcat gatcagttgc gataaaatct atcgtaccat ccagtaagcc ttctaaaagt
    46441 gccgcccgat cttctttgct acgaagtggg gggttcattt tccaattacc gtcatttcct
    46501 ggaatagctt cttcatctaa aattaagtga tgtggtgaaa cttcagcagt gacacgaatt
    46561 cccgcccgtt ttgcatctcg cacaacacga acagattctt ttgttgaaat atgacagaca
    46621 tgataatgac aacctgcagc ttctgctagt aaaacgtcac gtgcgatttg gacagattca
    46681 gcaatattcg gaataccttt cagaccttct ttttcagcaa aaatcccgtc atggacaacg
    46741 ccaccataga taagtgagtt atcttcacag tgagccacaa tcgccatatc tagtgctgct
    46801 gctcgtttca tcgcttcata cattgttcca gctaactgca cgcctacccc gtcatctgta
    46861 aaagcaaatg caccagcttc ttttaaagct tcaaaatcaa ctaattcgtc cgttccaagg
    46921 cttgttgtaa tcgaagcata tggtaacacg cgaactttcg ctgtttcttt aatttttgct
    46981 tgtaaacttt ccattacttc tttggaatct ggaacaggtt ttgtattcgg catcgaacaa
    47041 attgtcgtat agccaccgcg tgccgccgct tgtgttcctg ttaaaatggt ttctttatgt
    47101 tccccgcccg gctcacgaag atgtacatgg acgtcgataa aacctggggc aattaatttc
    47161 cctgtcgcat caaattcctc gccgcttgtt acttcaatgg aatccgcaat caaattgact
    47221 ttaccgtttt gaataagtac atctttgttt tccagttcac ctgacgcgtt taatacttgc
    47281 ccatttttta atacgtacat aatttcgccc tcatttcctg ttcttttaaa atagcttcca
    47341 aaatggccat tcttataaaa acgccattcg tcatttgcgt aacaatgcgt gatttttcgc
    47401 tttctactaa actatcagca atttccacat ctcggttcac agggcttggg tgcataatga
    47461 ttgcatcttc ttttaactgc tttgcccgat tttccgtcaa tccaaatttt tcgtggtagc
    47521 tttctttcgt aaactcatct gttccactat ggcgctcatg ttgtacacgc aaaagcatca
    47581 acacatccac tttttccaca atttcatcaa ccgataagta agtgccatat gctaagtaac
    47641 tttcgtcgaa ccattctctc ggtccggaga aaaacagttc cgcaccaagt ctttttaaca
    47701 ctttcatatt ggaattggca actcgactgt gacgaatatc accagcaatc gctactttca
    47761 aaccctgaaa agtaccaaat tgttctttta ttgtaaataa gtcaagtagt gattgactcg
    47821 gatgttcacc gcatccatca ccgccgttca caatagcaat gtctaatttt tcgagtcccg
    47881 catagtaatt ttcttctgag tgtctaatca ctgcgacatt gaccccgacg gcttgcattg
    47941 tgagcagtgt atcgtagagc gtttctcctt ttgtcatgct agagctcgct gcatcaaaag
    48001 aaacaacctc cacacctaac tttttctctg ctacttcaaa actcgtatgt gttctcgtac
    48061 ttggttcaaa aaacatattg accgcgaaag tctgttcatt aaaagtcgct tttttcccgc
    48121 gtttaaactg tgccgcctgc tctaataaat gctcgatttc atggacggtt aatgcttcca
    48181 ttgacaacaa atttttcatt taaagcgcca ccttttctac ttcattttat agaaaaacct
    48241 ctgtaaattt tttgtctgca gaggtttttt tgtcatgtgt tatgctgatc tgtgctcggc
    48301 tggtaatact aagtttaaga taatcccaat aactgccgcg agcgccatac cagatagctc
    48361 gaacgttcca gctttaatga ataagccgcc aattccgact actagtacaa ccgaagcaat
    48421 aatcatatta cgattaacac ttaaatcaat tttattttca atcatcattc gaagtccact
    48481 cgttgcaata accccaaaga gtaacaggga aatgccgcct agaactgctg taggaaccga
    48541 ggtgataact gcattgatgt aaccgataaa tccgaagagg attgcgaaaa ctgccgctcc
    48601 tccgataaca aacacgctat atacttttgt aattgcaaga acgccaatgt tttcaccgta
    48661 agtcgttaca ggtggtccgc cgatgaacga tgcgataatc gaagccgtac catctgcaag
    48721 taaggaacga tgaagtcctg ggtctttaaa gaagttttta ttcgtaattc gattaagtag
    48781 taattgatgc cccatatgtt ccgccattgt gacaaacgca agtggcgcca tacttagaat
    48841 gaccgtcacg gtaattactg ggtcgatatt tacaaatgga atgctgaaat ctggaatttg
    48901 gaagaaagag gcatttttga ttaacgtgta atctaccatc ccaaaagcca tacttgttaa
    48961 gtaaccgact gtgaagccga acaaaattgg aatcaagccc ataaatcctt tgaaaaacat
    49021 cattgcgatt atggttgcaa ggagcgtaat tactgctact gccaaagttt ctaaactgta
    49081 tttaccattg tttgttccca tcgccatcgc tgctgcactt ggagcaagcg acaaaccgat
    49141 aaccatgatt actggcccaa caacaattgg tggtaaaacc ttttgaatcc agtcaacacc
    49201 agcgtagtaa acaattagag aaacaatcgc atatactaca ccgacggaga acgttccgac
    49261 cataactgcg cccggacctc cgccagattt ggctgcaagt agtgcagtaa ttggtgcaat
    49321 aaaggtaaag gaagaaccta gatatgcggg gattttcccg cgagtaattc ctagataagc
    49381 aagtgtcccg agtccgctag atacaagcgc cactcccgga cttaaccctg tcacacttgg
    49441 cacaaagata gtagagccaa acatggtgaa aaggtgctgg atgctaagaa taatccattt
    49501 attgaagctt ggtctttcgt gtatatctag tactggtttt gtcactgttt ctgtcgtttc
    49561 tgtcattttc ttccctcttt cttcataaaa aatacccctt gtctgtgtcg acaaagagta
    49621 tagaataatc ccctatagaa attaatcact ctttgtcagc ctcacaggac tgcttttaaa
    49681 aaagtgttac attgttattc atttttgtta ataataaccg catcttcttc gttgtccaca
    49741 tcggttaggc gaacttctac tcgttcgttt cctgatgtcg gaatgttttt ccctacataa
    49801 tctgctctaa tcggtagctc tctatggccc cgatcagcaa gcactgcaag gtgaatttgc
    49861 gcaggtctac ctacatccat taatgcgtcc attgcggcac gcacagttcg acctgtataa
    49921 agcacatcat ctacaagaac gacttttttt ccattaatat cgaatggaat gttcgtccca
    49981 tgtacagcgg gttcgcgagt cttatcatct ttgaaagata aatcatctcg gtaaagtgta
    50041 atatcaatat ctccaactgg aacatcaata ccctcaattt caagtatacg cttatgcaaa
    50101 cgctctgcaa gatagatacc acgcgtctta ataccgacaa gcgctaaatt cttcgtgcct
    50161 ttattccgct cgatgatttc gtaacttact cgagtgagcg cacgtttgat tgccgcctcg
    50221 tccatgacaa ctacttgttt ttgcatccga aatctctcct tttgtgcaaa aaaataaccc
    50281 tctgccagtg taagcaaggg aacgcgtacg agtatacaat taacccgtca aattatcgtc
    50341 accttcttag cctctctgga ctatgttaaa ggactttatt tcattagact tatcttaact
    50401 gatagaactc tccttgtcaa tcaaaaaaaa gaaaaacatg ttatactatt aataataaaa
    50461 taaaggaggc caaacatatg gctatatcta aagcaaaaaa gaaacgtcaa aagctcatac
    50521 gcgaaggtca tttgaatcct gaaatcaagc gtagcccctt tgcactcatc gatttaagtt
    50581 ccaaacaaac aaaaacgaaa aaaggatatc tttatagtaa gaagcggaag aatcaccaag
    50641 aagatgattc tttttttgtg tattttttta agttttcaca ttttctacat attaacaact
    50701 tgaaatagtc tacttttacc agaaattagt ccaatttaac tgctctatgt gctatgctga
    50761 aatagctaaa aacatggact taagaggtga atacaatggg cataatgaat agcttattac
    50821 aacagaaaga aatggtcgtg aaagattggc taacgtatta tgtatctgtg gatgatccat
    50881 atatcttcac attaaaaaat gatcatcgtt taatggatga aacgggcttt gttttagaaa
    50941 atttgtttat tggaatgact gaagatttag gaaaaatgaa tgctttcgcg cgtgagcttg
    51001 gaaaagcaca gtttattact tcactcggaa tttctcgtat tttattccat attcgcttac
    51061 tggaagagtt tttgctcgat tatgcatcag aaatcaaaac aaaatctgct aattatcgtg
    51121 aattatattt atttagcatc aagcttcatc aggtatttag tagtttcacg caaaacttaa
    51181 tcgaaggcta tacccgtgca aatgaacaaa agattataca aaaagaaaac caaattatta
    51241 aagaatcaac caaactaatt tggattgccg aaaatgtttt tctgttacct ttaattggaa
    51301 gaattaccga tgagcgagca aaacaactta ctgaaacagc gcttgttgaa gtttgtgagc
    51361 aaccagtgaa ctatttaatt atcgacttat ctggcgtgca gttagagtct cctaacatcg
    51421 gcaagtacat tgagtatttc ttctcgtcgc ttaaattagt aggtgtaact ccgattatta
    51481 caggtatgca accgcaaact gccaaagtga tggttcaagt taatttaact gaacaacatg
    51541 gtattaaaac atttgcaacc ttacgccaag caacaaaaac acttatgaaa gaaaaagaag
    51601 caagaaacgc ccgtaaatag gtgttcttgc ttctttttta atattcttct tgacgtaatg
    51661 attttaaagc tttttcaaag gaactaggaa gtggcgcttc aaacatcatt cgttctttcg
    51721 ttgtcggatg atcaaaccct aattttgcgg catggagaaa ttggccattg cctttgattg
    51781 tatttttagg tccgtatttt ggatctcctg ctaaaggatg accaatatat ttcaaatgaa
    51841 ctcggatttg gtgcgtacgt ccagtgtcta atttgcaatt aattaatgtg taacctggta
    51901 aacgctctaa tacttcaaaa tgcgttctcg cttctttccc atcgcgtacg actgccattt
    51961 tttggcggtc ttcttttgca cgaccgattg gcgcttcaat tgttcctttt tggtggacaa
    52021 tgtcaccgtg gacaagtgcg atatattctc tatccgaagt tttgtctttt aattgtttgg
    52081 ctagtgattc atgggcatgg tcatttttag caaccattaa taagccagat gtatctttat
    52141 caattcggtg aacaattcct ggacggattt taccgttaat tcccgataaa tcatcacaat
    52201 ggaatagtaa agcattcacg agcgttccac ttgcatgtcc cgcagatgga tgaacgacca
    52261 ttccttcagg tttatttaca acaagcatat ctttatcttc aaaataaata tcgagtggaa
    52321 tatcttctgc taaaacttct agttcttctg gttcacgcac ttcgtaatga atttcatcgc
    52381 caacttgtac tttgtaattt ggcttcgcaa gttctccgtt aaccgtaata tcaccgtttt
    52441 tcagcatgag ttgtattgct gaacgacttt ttcccatcat ttcggcaatc actttatcca
    52501 cacgttcacg cgcatgactt tcttctataa tcaatgtttc attctgcatt atttaattcc
    52561 tttcgttttt cggtcgtcta caaaaacata cacgagcatt agtacgacac caactgaaag
    52621 cgcggcatct gccacattaa agattgggaa gtaataattt ccccatactg tttgtacaaa
    52681 atccactact tcttgatgca agactcggtc gataaaatta ccaatcgcac cacctagaat
    52741 aaacgctaaa ctaatagaaa atagtcgctt tcctttggca tatttttgca taatataaat
    52801 tataattcca ataacaacaa cagtaataag atagaaaaac cacatatgtc cttccaaaat
    52861 actccaagcc gccccgtcat tacggtagct tgtccagtat aagaaaccag gaataacttc
    52921 tattttctgt ccaatttcca tattttgaac aacaatccat ttagttaatt gatctagcgc
    52981 aatcactgct agggtgatta gataatagta cattttccga accctctttt cacatcagtt
    53041 agataaaaag tacgcgctcc cctttaaaaa taagaagagc gcatcacttc tttgttattg
    53101 tatgataaat tgaagcaaaa ataaagctgc aattacatac atgactggtg aagtacgttc
    53161 ctcatttttc gtgaaagcac gaaggattgg atacgcaatg aaaccagctg caattccgtc
    53221 tgcaatacta tacgtcagcg ggattaacac aataatcagt agtgctgaaa aagtttctgc
    53281 cgcattcgat aaatccattt ctttaaattc ttgcagcatc gacataccga taataattaa
    53341 aatcggcgca atcgcactgt tcggaataaa agataatacc ggcattaaga aaagggatgc
    53401 gataaagaac agaccagttg ttattgttgc taaaccagtt tttgctccac tcgcaaacat
    53461 cgagccactt tcaagtgcag agatcgttgg gcttgtacca aataagccag ataaaaaggc
    53521 tgtcagtgag ctagctttta aaatgcgtgg taatttttcg gtttgcttca gttgccttac
    53581 ttgtccattg gtaagtccaa ctgtttcaaa cacaataacc atcgtcatcg taaagacggc
    53641 actccaaaaa ccaacgctcg ccattccgga aaaatcagct ttaaagagta catcactcca
    53701 cggtgcaacg cttatcgaag cacctccagc tttcccggca acaccaaaca tcacaccaac
    53761 gactgtcccg attattaaac tccataagaa agcgcctgga atttttcgaa taactagaat
    53821 catcgttaat agtagtgtta caagtgttgc taatacgaat ggatcgccta aatctccaac
    53881 ggcaataata gcatgtttcc cgcgcgtgac gattccgccc ttctcaagcc ctaggaagat
    53941 taagaataaa cctaacccaa ccgtaatcgc ttgttttaaa atgagcggaa tagcttcatt
    54001 tagttttcct gcaagtggtg taaacgcaag aatcataaat agtaagccac tcatcgtaac
    54061 agcagcgagt gcaacctgcc aacttagtcc cattccttga acaagggtat acgcaaacag
    54121 cgcattaatc cccatcccag gcattagaat aagcggtgca tttgcccaaa atcccataat
    54181 caaacaacct aacgccgaaa taaaaatcgt cgcaaggact gctccttgat aaggaactcc
    54241 agcctccgct aaaatcgagc tattgacgac aataatatat gccaccgtaa aaaagccaat
    54301 cataccagcc aaaaattcgg tccggaaatt ggttttatgc tcgttcagcc gaaatacttt
    54361 gttgaaaaat ttctgcatac tttttcctca ttatgaaatt gtccctctcc caacccgcag
    54421 agtattgccc ctgccacaga actttattat aacaaagata gtacatatac gaaaggaaaa
    54481 gttttttgtt acgccgccag aacgccttat ttatgctata atctgaatgg atgcaaaaag
    54541 gagatgatta cttgcaaaaa acagtcacat atggggcaaa atggaaacaa tttttaacga
    54601 tattcacacc gattgtcatt acgcaactca cgcttttctc tatgacattt ttcgatacga
    54661 cgatgagcgg aaattattca aatcaggcac tggctggtgt agcaattggg agttcgttct
    54721 gggctccagt aaatgctgct ttttctgggt tactgatggc catcacgcca atcatcgccc
    54781 aattaatcgg agcgaagaaa gaaaaacaag tcaaaaacac ggtgcataac ggtctatata
    54841 ttgctttatt tttagctttt attttaattc ttattaattt tttggtcgtt ccaacgattt
    54901 tgacacacat gcccgttacg gcagaagtcg cggggattgc tcgtcatttc ttaaatggca
    54961 tttgtatcgg aatcccggct ttctttattt ccgcgatttt gcgttctttt attgattcgc
    55021 ttggtttaac tagggtaacg atgctcatta cactttgtac agttccattt aatatctttt
    55081 taaattactg ctttattttt ggaaactttg gttttccgga aatgggtgga gctggtagtg
    55141 gttacgcgac agggattacg tattggctcg ttgttttagt tagtgttatt ttgattcaaa
    55201 cacaaactag attacgaaaa tttggtattt tcaaagggct tacggcactt cgtttttcta
    55261 agataaaaga gatcatcggc attggcgttc caaatggttt gacaatttta tttgaaacga
    55321 gtattttctc agcggtaacc attttaatgg gggcctttgg gacggagaca attgcggcac
    55381 atcaatccgc aaatagtgtc tgcacactgc tctatgcttt cccgcttagt gttgcttcaa
    55441 cgttgaccat tcttggcggg tacgagacag gggcaaaacg cttaaaagat gccaaacagt
    55501 atcgtcatat tggtatggct gctgcgattt tcattggttg tgtaaatggt gcaatcctat
    55561 ttttcttccg cgatattatt gctggttttt atacgaacga tcccgctttg agcaatttaa
    55621 tcatgcattt cttagtttac gcgatattgt ttcaatttgc ggatgctgtc ctgtcgccag
    55681 ttctcggggc acttagagga tataaagatg ttacggtcac ctcgattgtt gcctttattt
    55741 cttattggtt gattgggctt ccagtaggct acggtttatc gtttacgaat cttggcccat
    55801 tcggttactg gatagggtta agtactggcc tgtttgtcgc cgcatttatt ttatccattc
    55861 gggttcgtaa aacggagcaa aaactttctt tcaacacaaa agacgcagag atttcgagtt
    55921 aatctctgcg tcttttttta tttggctaaa ccatcatgaa ttttatctaa attgtattgc
    55981 atcatttcta aatacgtgtc gcccacttca ccttttttag cagtggagtc cgtgaagatt
    56041 tttgcgaaaa ttggtacgcc tgtttcttta gatacacttt ccatactacg tggatctacg
    56101 cttgtttcga caaataaatt aggcactttt tctttttcca cgataccgac aatttgtttc
    56161 atttggtctg gagtaccttg actttctgta tttatctccc aaatatatgc tgcttttaat
    56221 ccgtagcgag ctgcaaaata tttaaaggca ccttcgctag ttactaatgt tttttgattt
    56281 tctggcaaat ctgcaaattt ttgttttgct tctttatcca gagtagctaa tttgttgata
    56341 tattttttcg cattctcttt ataaaaatcc gcattgtctg gatccgcttt tacaagtgca
    56401 tcacgaacat tttcagtata gataattccg ttatgaagat caagccatgc atgtggatct
    56461 gtttcagacg tcttgccttt ttccgttaag tatttgggtt ttacaccttt acttaactcc
    56521 accacttgct ccttgtcgtc tcttgattta tccgccgttt ctaacatacg atcaaaccaa
    56581 ccattccctg tttccaaatt caatccattg taaaagatta aatcagcatc cgcagcactt
    56641 tgaatgttgg ctggcaaggg atcatattca tgtggatcaa cgccaacagg cacaatacta
    56701 tgcagttcaa ttttatcccc gcctacattt tttacaatat ctgctaatat cgaataggtg
    56761 gctacgacat ttaatttgcc gtctgttttt ttcgaatcgc tattttgact ggaacacccc
    56821 gcaagcacaa ctactaatgc gaaaagagct acaactatta tttttttcat tcgataacct
    56881 cccttttttt agaaaatagc aaaccttgtt tcggtgcgaa taaaaaggca ataaagaaaa
    56941 taatcgtcgc aactaaaacc atcgccgcac cagatgctaa gttgaaaatg taactaaagt
    57001 aaagtccgat aatcgcactc actgctccaa atgtagaagc taaaacaatc attttggata
    57061 atttattcgt aagcagataa gctgttgcag ctggcgtaat taacatcgcc acaactaaaa
    57121 tgattccaac cgtttgcaaa gcggaaaccg ttacaagtgt taaaagtaac atcaagaagt
    57181 aatgcaagaa tttcacattg agaccatatg cttctgccat cactggatca aatgaactaa
    57241 ctagaaactc tttgtaaaat agggctacta atgaaatcac gataatggca ataataatcg
    57301 tcatccacat atccgaactc cgcaccgcaa gcacatttcc aaataaaata tgatacaaat
    57361 ccgtactact tttcgcaaag gatattaaaa taatacctag tgcgaaaaaa gcgctaaaca
    57421 caataccaat cgctgtatca ttttttatcc gacttttttg attaacaaaa ccgattccaa
    57481 gtgccgctgc aatgccaaat gtagctgcac caataaagaa gttcataccc atcatataag
    57541 aaatcgctac tcctggtaac accgcatgag aaatcgcatc tcccataagc gacatacctc
    57601 gtaaaataat aaaactacca ataacacctg aaacaatgcc aactgtcaca gaagtaataa
    57661 gtgccttttg taaaaaacta tactgcatta atccttctaa aaacaacatc tattacaccc
    57721 ccgtcgcaaa tgccaccggt gcgtcaccgt aagcaaattg aattttctct tctgtaaatg
    57781 tttgctccac tggaccgtgc gcgactaact tcttattaag taaaatgata tcgtcgaagt
    57841 aagcagccac tttatgaaaa tcatgatgga ccacgacaat cgttttccca ttatctctta
    57901 gcttttttaa caggcgcata atcagcgctt cactcgtcat atcaatacct gcaaatggct
    57961 catctaaaaa gaaaatttcc gcatgttggg caagtgctcg tgcgataaaa acacgttgca
    58021 gttggccgcc agatagctct cctatttgtc ttttcataaa gcctgtcatt tctacttgtt
    58081 ctaacgcatc taatgcgagt tgtttctctt tttttccggg acgcttaatt aatccgagcg
    58141 ctggatacgt tccgagcaac accatatcaa aaacggtaat tgggaaagtt aaatctactt
    58201 cactccgttg cggtacgtat gcgattttct ttctccaata tgtaagtggt ttgtcagcca
    58261 atgtgacctg cccttgttca cgcggaatta gtcccatcat tccttttaat aaggttgatt
    58321 tacctgctcc atttggacca acaatacccg ttagttttcc tgatgctatt tgaagtgtga
    58381 cattatcaat tgccaccttt tgtttatacg ctattgttaa accttgaatt tccatctaaa
    58441 ccaccctttt cccacaagac taatttttac acataactaa aaatgtttcc taagagcaac
    58501 tttagttcaa agtataacgg agaatctttt tcttgtaaag taaaatgttc aaaaaaatcc
    58561 cgtagt
//
LOCUS       DASEAA010000003        56811 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.003, whole genome shotgun sequence.
ACCESSION   DASEAA010000003 DASEAA010000000
VERSION     DASEAA010000003.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 56811)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 56811)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..56811
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.003"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..458)
                     /locus_tag="U0342_000113"
     CDS             complement(<1..458)
                     /locus_tag="U0342_000113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2812 domain-containing protein"
                     /protein_id="HEM2421495.1"
                     /translation="MEKKVVKFFTVDNMEKEEAYLNEMAQNGWFFQKYKSFRYHFKQG
                     EPAKYSYAIDFKENEGDEDAYKTLFEDAGWETVFSYPVLNGNWMYFRKAVAPGETEEA
                     IFTDETSLIQLYKNIRKRWTIFGAIVSLFLLIELLIVFQMENNIGITTFI"
     gene            complement(461..772)
                     /locus_tag="U0342_000114"
     CDS             complement(461..772)
                     /locus_tag="U0342_000114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM2421496.1"
                     /translation="MNEKLRKAYLPMTETAFYILLSLVKPRHGYAIIENVAKMTDDRI
                     KLGPGTIYGSLSKMNKDNLIQIIQEESNRKIYQITEIGTDILQLEKARIEELYRNSRE
                     V"
     gene            complement(803..1333)
                     /locus_tag="U0342_000115"
     CDS             complement(803..1333)
                     /locus_tag="U0342_000115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2421497.1"
                     /translation="MKIRIIGSVGSGKTTLAKKLSEWQQIDYFETDRIVWKREETEVR
                     RTDNEKIAVLNKILQQENWIIEGVHLEAWVDESINQADVVIFLDLPKKQIRSQIIKRQ
                     IKQLIRLEAAHYPIRFNMLKKMFYWDDLFDQRTKPLIARKMAQNPTKWLIIKEKTVFQ
                     EIKNGVLQIISSRDIL"
     gene            1422..1871
                     /locus_tag="U0342_000116"
     CDS             1422..1871
                     /locus_tag="U0342_000116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEM2421498.1"
                     /translation="MIILFIVSGLLAGMVLPVQTAINTRLSTYTKSPFLASWVSFMVG
                     TTVLLIVCLFTQKSWPISSEMIASNPWYIWVGGGTLGVIFLTANILLLPRLGSALLVM
                     ITVCGQMIMAIIIDNFGLFQVPMHEINIERLLGVILMFGGIYLMQRF"
     gene            1886..2353
                     /locus_tag="U0342_000117"
     CDS             1886..2353
                     /locus_tag="U0342_000117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEM2421499.1"
                     /translation="MTKRSSKSLLLFMAMGLVSGLLSPIQTSINSQLRLTVGSPFVAS
                     FISFLVGTTLLTLVCLIVERRLTFQLKGVGRIPWWVFTGGALGVLFVTSNILLLPLLG
                     SAMTVVLALCGQMIIALIIDHFGFFGVIPHPINRYRMIGVLLMLVGVFLIQRF"
     gene            complement(2398..2964)
                     /locus_tag="U0342_000118"
     CDS             complement(2398..2964)
                     /locus_tag="U0342_000118"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEM2421500.1"
                     /translation="MRIYTKTGDKGMTRIIGGSKVSKDNIRIDAYGTLDELNSLIGYT
                     ITTLGAEPEIQAELEQIQQQLFDAGGDLATEEGKRAYKLTSEPVAWLEDRIDIYADEP
                     PEIEKFILPGGTQAASLLHMARTVTRRAEREIVGMLKIASSNEEVLKYVNRLSDYFFA
                     VARVVNYRAGETDIFYKNSELVFRNKKK"
     gene            complement(2928..4463)
                     /locus_tag="U0342_000119"
     CDS             complement(2928..4463)
                     /locus_tag="U0342_000119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyric acid synthase"
                     /protein_id="HEM2421501.1"
                     /translation="MVKQIMIQGTASDAGKSVLVAGLCRLFKNKGKRVVPFKSQNMSL
                     NSFITATGDEMGRAQVFQAEAAGVFPDVRMNPVLLKPTNDRQSQVVFMGAILDNMDAV
                     TYHDFKQTLIPKIQAVYQSLADENDIIVLEGAGSPAEINLNDRDIVNMGMAKMVDAPV
                     VLVADIDKGGVFASIYGTIMLLNEEERARIKGVIINKFRGDVALLQPGIDMIEELTNV
                     PVIGVIPYANLQLEEEDSVSLSGKNYVPDSNALLDIAIICLPRISNFTDFHILEIQPD
                     ISVRYIRNIADFGNPDLVIIPGSKNTLEDMAFLEESGLKNAIQNYAKNAGKVIGICGG
                     YQMLGKKMLDPNQVESKQLEIAGLGLLDTETIFLDQKRTTQITGVTHSGEAVEGYEIH
                     MGETKRGESTSPFCEIKAVNGNEETHQDGAISVNKNIIGTYIHGIFDNDVFLGNLFDE
                     LLTGKNKSVYPHEIINLKEHKEQEYDKLAALLEANIQMDQLEKIMKGEKICVSTQKPA
                     IKE"
     gene            complement(4463..5269)
                     /locus_tag="U0342_000120"
     CDS             complement(4463..5269)
                     /locus_tag="U0342_000120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2421502.1"
                     /translation="MLKTEHISFQYEDGKQALTDVSIDLEKGNIIGLIGANGSGKSTL
                     FMQLLGINKPSDGTVYFEGKPLAYTKKALFALRKKVSIVFQDPDQQIFYSNVRDDVAF
                     ALRNLGVSETEVEARVTKVLDIVGAKDFQHKPVQYLSYGQKKRVAIAGALVLDTDWLL
                     LDEPTAGLDPIGKKIMMEIIERLASQGKKILISSHDIDLIYEICDYVYMLKDGSVLTD
                     GETSNVFLEKSNVEQAGLVQPWLIKLHQQAGYPLFKKEADFFAHTGKVTN"
     gene            complement(5282..5959)
                     /locus_tag="U0342_000121"
     CDS             complement(5282..5959)
                     /locus_tag="U0342_000121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     transmembrane protein"
                     /protein_id="HEM2421503.1"
                     /translation="MLTIDKYAYQNRWIAFSPSLKALFYVAILILALTGPVLIQAILF
                     FCMVPLTLYVVKIHFKQYLKWLLLPFSFLLFSLLSILISISKDPSSFLASISIGSLYL
                     GVSDVTITTATQVFFRSIACLAATYFFVLTVPVVQLTKVMKRIFIPKVLIELTILIYR
                     FIFIFLEEAAAIRKAQSLRFGYHGIKNSYRSFGMLVNTLFNRVMKRYNEMVITLDVKL
                     YQGEFHI"
     gene            complement(5946..6242)
                     /locus_tag="U0342_000122"
     CDS             complement(5946..6242)
                     /locus_tag="U0342_000122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2421504.1"
                     /translation="MKKININVILILLVVLLMVSPFFFNKTGEYGGSDGEAEAEITKI
                     DPSYEPWFEPLYEPKSGEIESLLFTLQGCIGTGIIAYVIGVSRGKRKAENDVNH"
     gene            complement(6239..6889)
                     /locus_tag="U0342_000123"
     CDS             complement(6239..6889)
                     /locus_tag="U0342_000123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464729.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter permease"
                     /protein_id="HEM2421505.1"
                     /translation="MHIMEGFLPVKWAVFWFIVFIPFLVLGLIRIRKLIALDKNNKLL
                     LALCAAFIFVLSALKIPSVTGSCSHPTGVGLATVMFGPLVVSVLGVIVLLFQALLLAH
                     GGITTLGANAMSMAVIGPMVGFVVYKLARKLNCNKSVSIFLCAMTADLATYLTTSVQL
                     GVVFPDPASGMMASILKFMAIFCVTQVPIAIAEGLLTVVMYNLISKNLPEKVAQLR"
     gene            complement(6970..7680)
                     /locus_tag="U0342_000124"
     CDS             complement(6970..7680)
                     /locus_tag="U0342_000124"
                     /EC_number="2.1.1.151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-factor II C(20)-methyltransferase"
                     /protein_id="HEM2421506.1"
                     /translation="MAKFYGIGTGPGDSKLVTMEAAERLGNLEILYTPQPKKGGESLA
                     KKIVSPYLKDTLIIKERHFPMSYNKEEKMLAWKEIAEEIKADVQNGHDVGFITLGDPM
                     VYSTYSYLLELLKGEIETVTLAGISSFSNIASKIELPLVMDEESFAVIPVTAGAEKIE
                     QALTLFDTVVLMKAASNLPLLTTLLKKLNLLDAAVVVSDVAMATEKITYGMNEINPDE
                     KMSYFTTIIVKKRREQYK"
     gene            complement(7673..8458)
                     /locus_tag="U0342_000125"
     CDS             complement(7673..8458)
                     /locus_tag="U0342_000125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sirohydrochlorin cobaltochelatase"
                     /protein_id="HEM2421507.1"
                     /translation="MKKAILVVSFGTSYPETREKTIEACEKKVAQEFPDYNVFRAFTS
                     NKIIKKLKTRDNMHINTPSQALNQLKELGYKEVIIQSLHIISGGEFEKITAQVEKFKP
                     DFDSIIVSQPLLDSMEDYEKAIEAIRHQMPPLKEQEALILMGHGSKHRAFSAYACLDH
                     MLLNEPIYLCAVESYPGLDQVIERLQQANIKKAHLMPFMLVAGDHATNDMASDDEDSW
                     KSTLEQAGIQTECHLQGLGENPLIQAQFIDHIHTAIERVKARG"
     gene            complement(8455..9936)
                     /gene="cobA"
                     /locus_tag="U0342_000126"
     CDS             complement(8455..9936)
                     /gene="cobA"
                     /locus_tag="U0342_000126"
                     /EC_number="2.1.1.107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III C-methyltransferase"
                     /protein_id="HEM2421508.1"
                     /translation="MGKVMLIGAGPGDAQLLTVKGLAALQKADVIVYDRLVEPAMLQE
                     RKASCKLIYVGKEPLHHPIPQEEIEQILVKEAATNELVVRLKAGDPYVFGRGGEEGET
                     LYKAGIPFEVIPGITSAIGGLAYAGIPVTHRNFASSFHVITGHLKKGRDPLDWEALAR
                     LEGTLVFLMGMTNLPNICANLLENGRKAETGVAIVQWASRGKQLTVTGNLQNIEQKVA
                     ESGISSPALIVVGDVVSLRPQLNFFEEMPLFHTKVLLPRARAGKSMLAEQIRDLGGEV
                     TMYPNIQVVDVVPTKTKEELREVSGLLFTSKEAVERFFDYLAQLDLDIRSLKNTHLTA
                     IGKQTKEAFSEKGIIPDSFIKRRSTELILEHLPRLQKNVSNLIIGSIVDTAEVNAILA
                     EVEAMEMMPLYDMRPVTERPFDLASFEQVCFSSSRSVQNLLDVLTTEEKAILQTKTIL
                     SIGRFTSATLASFGINNFIEAESATPESLIELIQKTKLEGVPQ"
     gene            complement(9936..10688)
                     /gene="cobK"
                     /locus_tag="U0342_000127"
     CDS             complement(9936..10688)
                     /gene="cobK"
                     /locus_tag="U0342_000127"
                     /EC_number="1.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-6A reductase"
                     /protein_id="HEM2421509.1"
                     /translation="MIFVLGGTSDSLAISDWLTEKKQAFILSVATDYGETLAKQHAEN
                     VFCGRLSKEEMLLKWHATKVHLVIDATHPFATIVSETAMEACKEADIPYIRFERTSEQ
                     TDNTYLVADIEEACAVAMKLGKRIFLTTGSKNLPEFVAGLNNRHIIARILPVSDVIRS
                     AEELGLVADQIIGMKGPFTKEANRTQLEMTGADVLITKESGKQGGFQEKLAAAAELNI
                     PVIVIRRKKLNYPIEINHLSELPEILTQLEVY"
     gene            complement(10685..11410)
                     /gene="cobJ"
                     /locus_tag="U0342_000128"
     CDS             complement(10685..11410)
                     /gene="cobJ"
                     /locus_tag="U0342_000128"
                     /EC_number="2.1.1.131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="precorrin-3B C(17)-methyltransferase"
                     /protein_id="HEM2421510.1"
                     /translation="MIYVIGIGPGDKRLMTGEALQAIEDAEVIVGYVTYIKLIKELIK
                     DKEVVKTGMRREIDRCQEAVDIALTGKKVAVVSSGDAGIYGMAGLVLELAEKSNPDLE
                     VKVIPGITASIGAAAVLGAPIMHDFCHISLSDLMTPWEVIEKRLTHAAMADFVVCFYN
                     PRSKGRANHLANAFQKMMEHKSGDTVVGIVKDVGRKEERKIITTMRDIDYELVDMTTM
                     VIVGNKETYVKNGKMITPRGYTL"
     gene            complement(11407..12438)
                     /gene="cbiG"
                     /locus_tag="U0342_000129"
     CDS             complement(11407..12438)
                     /gene="cbiG"
                     /locus_tag="U0342_000129"
                     /EC_number="3.7.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin 5A hydrolase"
                     /protein_id="HEM2421511.1"
                     /translation="MNTDKLAIIAVTERGRDLAITLTKTVAATIFVPGKHCNEQTNSL
                     TPDFGTAMREIFTKYQALICIMATGIAVRTLAPAIEDKLSDPAVLVMDEHGKFIISLL
                     SGHVGGANELTEQIAAITGGAAVITTATDRANVAAIDNIAKQLNGYLPDFKATTKRIN
                     GLLAAGKEVGLYIDEPLDIDTRGFTMEEVSPQVYISTKYKLQVATHERIQLVPKQFIL
                     GVGCRKGVSAETIAAAFTHFCEQENIHPRAFREIHSITLKAEEPAILHLAEKWRVPFI
                     VHPAEELQTVAGKYPTSAFVQKTVQVGNVALSSADIGSNGNVVTSRFAENGVTFAAGK
                     LTKNSEVAK"
     gene            complement(12425..13174)
                     /locus_tag="U0342_000130"
     CDS             complement(12425..13174)
                     /locus_tag="U0342_000130"
                     /EC_number="2.1.1.271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-4 methyltransferase"
                     /protein_id="HEM2421512.1"
                     /translation="MAEVHFVGAGPGDKELITLKGYQLLKEADVVIYAGSLVNPELLE
                     YCKPDCEIHNSASMNLIEIIDCMEAGVTAGKEVVRLQTGDFSIYGSIREQVEEMKKRS
                     IPFTCTPGVSSFLGAASSFGVEYTVPEVSQSVIITRMAGRTPVPSRESLRSYAAHQTS
                     MVIFLSVQGIRKVVSELIKGGYKPETPAAVIYKATWAEEKKVTGTLEDIAEKVTEAGI
                     TKTALIMVGDFLGEEFYYSKLYDKDFKHEYR"
     gene            complement(13180..13749)
                     /locus_tag="U0342_000131"
     CDS             complement(13180..13749)
                     /locus_tag="U0342_000131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="decarboxylating cobalt-precorrin-6B
                     (C(15))-methyltransferase"
                     /protein_id="HEM2421513.1"
                     /translation="MKDEVFIRGKVPMTKAEVRAASIDLLNLDDTSKKLLDVGAGTGS
                     VGLQVACNFPKIQVTAIERNPDAVDLIKQNQAKFGLENVTVIEAYAPIELPEKETFDA
                     IFIGGSGGNLTDIIDWSLAHLNPGGGLVLNFILLENALTAMNHLEKLTVSELTMKQIQ
                     VSSWHKLGAGHYFEPQNPTVIIGCKKLEE"
     gene            complement(13739..14335)
                     /locus_tag="U0342_000132"
     CDS             complement(13739..14335)
                     /locus_tag="U0342_000132"
                     /EC_number="2.1.1.289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-7 (C(5))-methyltransferase"
                     /protein_id="HEM2421514.1"
                     /translation="MITVVGIGPGDTNLVINEAKQVLSTAEIVYGSTRQLQEITELTT
                     ATPMLLPKKLADLKNIPHQNKNVVILASGDPLLYGIGNWALANFSEDVRIVPGISAIQ
                     MMFHRIQLPMNDCFITSSHGKTPNFDFLLQHEKVAMVTDTIIGPYEIAAEILQRGLKK
                     ILFIGENLSSKEERIHKLKPEQVAKKYDMNVVVIVDEG"
     gene            complement(14332..15453)
                     /locus_tag="U0342_000133"
     CDS             complement(14332..15453)
                     /locus_tag="U0342_000133"
                     /EC_number="2.1.1.195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-5B (C(1))-methyltransferase"
                     /protein_id="HEM2421515.1"
                     /translation="MEDFIYYNGKKYRKGYTTGTCAAAAAKACVEMILTQEEVSAVQV
                     TTTGGTILEIPVAYQKFSKDKATAAVQKDGGDDIDATHGMWIFVDVDLTDNAEVVLDG
                     GVGIGRATQKGISVAVGEAAINPAPRKNILATVRESLGENRGAKILVYAPEGEERAKR
                     TMNSNLGIIGGISILGTTGIVTPMSDEGWKKSLSMELEMKRNQGLDQIILVPGNYGDD
                     FVQNTLGFSSGNIVSMSNFVGYMLKETQRLAFKKVLMVGHFGKLVKVSAGIFTTYSKD
                     ADARAEILVANLALLGAPLSLLQAVEKCNTTEAAGELIEEAGFTQVYDVIVQKIKARS
                     ERFLKFTKPSVEVDVVTFSTERGLLAATKDIDVLREEWR"
     gene            complement(15469..16101)
                     /locus_tag="U0342_000134"
     CDS             complement(15469..16101)
                     /locus_tag="U0342_000134"
                     /EC_number="5.4.99.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalt-precorrin-8 methylmutase"
                     /protein_id="HEM2421516.1"
                     /translation="MNYIKNPAKIEEKSFEIIQQIINDIRPDYTFQNKLEEAIIKRAI
                     HTTADFDYLDSLVFQQDAIAKIIHVLQNKGTIFTDTNMALSGINKRLLDELGCKYHCY
                     VSDPETMEIAKQHGITRSMAGIKLASLKDGPKLFVLGNAPTAVYKIIEMTESGELQAD
                     AVVAVPVGFVGAAECKEEILETDIPAIVARGRKGGSNLAAAIINAILITM"
     gene            complement(16114..17061)
                     /locus_tag="U0342_000135"
     CDS             complement(16114..17061)
                     /locus_tag="U0342_000135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin biosynthesis protein"
                     /protein_id="HEM2421517.1"
                     /translation="MILLFYTSSFILDCLLGDPYSWPHPIKAIGNLIKWLTIILRKIF
                     HGKSLYFAGGLLFVLTVGMTGVVSWFILFLSAKIAYWLYIAVFVYLGYTTLAMTCLAK
                     EARKIQRTLADGDLAAARVQVGMIVGRDTDKLTAEEISKATIETVAENTADGVIAPLF
                     YLFIGGPVLALMYKAVNTLDSMVGYKNEKYRAIGFVSAKMDDIANFIPARLAWFFLVI
                     ASFILRYDGRASWQIGLRDRKNHTSPNCAYPEGAVAGALGITLGGTHEYFGETVIKPT
                     IGSGNKPVSEKEISQTIHLLYTASTIAFIIFASIYLLLF"
     gene            complement(17058..18416)
                     /locus_tag="U0342_000136"
     CDS             complement(17058..18416)
                     /locus_tag="U0342_000136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobyrinate a,c-diamide synthase"
                     /protein_id="HEM2421518.1"
                     /translation="MNKILIAAASSGTGKTTITLGIMHALKKRGLRVQPFKVGPDYID
                     TNYHQAITGVASINLDSFLIDDDAMLATLFQKHGESADISVIEGVMGLFDGLGIDRDN
                     SSTSFIAKCTKTPVILVVDGKAISTSAAAIVDGFNRFDPELTIAGVIINRVASENHFS
                     LIKGAIERYTDVPVLGYLPKNAAVALPERHLGLVPKEEMTELETKWELLGDLIAEHVD
                     LDRLLAISKTGAKLTVHPPEIQVPDFSGVRVAYALDAAFHFYYQDNLDFIRSTGATLI
                     PFSPLEEREVPDADFIYIGGGFPEVFAEQLAKNKSMRESILAAHEQGKPIYAECGGLM
                     YLGSSLEMEAESYEMVGVFDGVSKMTTRLRKFGYCIAEPLEDTLLGKKGTAIRGHEFH
                     HSVFETTEPTRMKLTKKRDGKIVKEWHGGYQKGNTFASYLHIHFYQNLLIITHMFGAI
                     ER"
     regulatory      complement(18578..18755)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(18749..19243)
                     /locus_tag="U0342_000137"
     CDS             complement(18749..19243)
                     /locus_tag="U0342_000137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM2421519.1"
                     /translation="MKIQKLVLCAMLIAMCVIGANIKLMGSVAFDAAPAFIGTLLLGP
                     MYGAVLGIFGHLTSALLAGFPLTLPIHLIVAGMMGVTMIAYGFTRQKLAEKNQLVAVS
                     VSSIVAFVFNCPLSLLALYPLMHQAVFVLFPVLAIGSICNIFVAEVVYQVLPERWKRR
                     IAGY"
     gene            19557..20108
                     /locus_tag="U0342_000138"
     CDS             19557..20108
                     /locus_tag="U0342_000138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2421520.1"
                     /translation="MEKEKVVNIQPLMDSQVESQFTQQIQEDFNKKNPDHSALLHSLE
                     TVEVLDVLSDYYSAHEKQKQPRKETTSVNKTGKEHKEIKQAIRYIKKNIHRSITLEEV
                     ANYVYLSPFYLSKLFKNELNINFINYVNEQKMLYAKEQLEKSDWAVHTIAKNLGFSRA
                     SYFCKVFKKEFDMTPKEYRDSLK"
     gene            complement(20150..20593)
                     /locus_tag="U0342_000139"
     CDS             complement(20150..20593)
                     /locus_tag="U0342_000139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF861 domain-containing protein"
                     /protein_id="HEM2421521.1"
                     /translation="MADISKELIEQLVKQVVLEKMGQSSKHVDPSGILSVKLPVVKVS
                     EEDRLDTGNPSDVVYTKDLVTLEESKRLGFGLMEMKDTTFDWFLDYDEVDYIIEGRLD
                     VVIDGRTVSAGPGEIIFIPKGSQIKFSVTGEARFIYVTYPADWQS"
     gene            complement(20586..21707)
                     /gene="eutH"
                     /locus_tag="U0342_000140"
     CDS             complement(20586..21707)
                     /gene="eutH"
                     /locus_tag="U0342_000140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutH"
                     /protein_id="HEM2421522.1"
                     /translation="MSINEIIIYLMVIFMILGAIDKIIGNKFGLGAQFEEGIMAMGSL
                     TLAMVGIITLAPVLAKILSPIVVPIYTALGADPAMFATTLLANDMGGFALAQELALTP
                     DAGLFAGAILGSMMGPTIVFTIPVALGIIKKEDHKYLATGVLSGIITIPIGCLIGGLV
                     AGFSPIMIFKNLVPIILVAALIMLGLWFKPEGMIKGFTIFGKGVVIVATIGLVAGAIQ
                     QLTGLTIIPGIAPIGEGIEIVGGIALVLAGAFCLVFVITKVFNKPLMKMGKLLGMNEV
                     AAAGMVATLANSIPMFQMLKDMDERGKIINVAFAVSAAFVLGDHLGFTAGVAQDMIFP
                     MIVGKLVGGVTAVAVGIYMANRMMKKNKAKEQTAVKDNG"
     gene            complement(21723..22268)
                     /locus_tag="U0342_000141"
     CDS             complement(21723..22268)
                     /locus_tag="U0342_000141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2421523.1"
                     /translation="MAEQSLGILELRSISKGYEMADVFLKAGNVTLFTFRPTCPGKFL
                     IILQGASGELTSAMQDAKEEAGKFHVSSYILHMAHEELLAFLNNKHPKVEVDAVGIIE
                     ISQLGAGLNAVNEALKKSAIHLKRMTLGASIGGKFVAVFTGEVSAIQEGMRILIETAE
                     PKKVIHHTVIPSPDELLKRYL"
     gene            complement(22261..22530)
                     /locus_tag="U0342_000142"
     CDS             complement(22261..22530)
                     /locus_tag="U0342_000142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HEM2421524.1"
                     /translation="MQIGKVTGSLWATRKDEKLNGLKLLLVEICTDETEDVRHSIVAA
                     DNAGAGNGDLVLVTTGSAARASTGDNTIPVDACIVGIIDSVERYG"
     gene            complement(22545..23117)
                     /locus_tag="U0342_000143"
     CDS             complement(22545..23117)
                     /locus_tag="U0342_000143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR02536 family ethanolamine utilization
                     protein"
                     /protein_id="HEM2421525.1"
                     /translation="MSMELDALIKAVTEEVMRRLQLPEKKMIIMGQDSEHTLRQCYLK
                     EYQVSLYDRSERACDILLLEELDIAELARISLFAPMNKKEQFITDHLLAGRPTWIMKS
                     GIKAHAYKRSAKYGIRQLFQEYEEKLSRFGVEFIESPVKETKESKVITEQDVEKLTKN
                     KSEFILPKGSFLTPLAKDYLQEKRISIKES"
     gene            complement(23114..23755)
                     /gene="pduL"
                     /locus_tag="U0342_000144"
     CDS             complement(23114..23755)
                     /gene="pduL"
                     /locus_tag="U0342_000144"
                     /EC_number="2.3.1.222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate propanoyltransferase"
                     /protein_id="HEM2421526.1"
                     /translation="MNNELITSLIEEVTRRALLETGVEVEASGRHVHLDRETVDALFG
                     PGYELTHFRDLSQPGQYVCKERISIVGPKSVIHNVVILGPIRKKTQVEISSTDGTALG
                     IKAPVRESGDIAGTPGILLLSAKNSVQLSEGLIVAKRHIHMTPADAEKQQVSQSEIVQ
                     VKINGDRPLIFDDVVVRISPDFATYMHIDYDEANACGFKKGIRGQIIKKTKAK"
     gene            complement(23768..24523)
                     /locus_tag="U0342_000145"
     CDS             complement(23768..24523)
                     /locus_tag="U0342_000145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cobalamin adenosyltransferase"
                     /protein_id="HEM2421527.1"
                     /translation="MAILTEDELRKAYLHTDLKTTKKLDIKKGTIITPSAKSFLSEKK
                     IDLHYIDEIAETKVVVEPVKKETTRAKFQTIYGGALDEKPEHMTHLRGNLLVFKDHPQ
                     IAFRGKLDTLEAEILETQCSVAAEFKDLAEDLQEILTFVRNIVRSEVLNEQIESVHLL
                     GMDEKELRERSHNPKKYYQMTHFMPDYTMGNAVIRLNKIRTMVRETELAAFLAFKEAD
                     YSIKRPDIIQALNRLSSLFWILMFRVRTGEYKK"
     gene            complement(24689..24973)
                     /locus_tag="U0342_000146"
     CDS             complement(24689..24973)
                     /locus_tag="U0342_000146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2421528.1"
                     /translation="MANANALGMIETKGLVGAVEAADAMVKAANVTLMGKEQVGGGLV
                     TVMVRGDVGAVKAATDAGAAAAERVGELLSVHVIPRPHSEVDAILPKSAE"
     gene            complement(25005..26465)
                     /locus_tag="U0342_000147"
     CDS             complement(25005..26465)
                     /locus_tag="U0342_000147"
                     /EC_number="1.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetaldehyde dehydrogenase (acetylating)"
                     /protein_id="HEM2421529.1"
                     /translation="MALEDKDLRSIQEVRNLIESANKAQKELAAMSQQQIDTIVKAIA
                     DAGYGAREKLAKMAHEETGFGIWQDKVIKNVFASKHVYNYIKDMKTIGMLKEDNEKKV
                     MEVAVPLGVVAGLIPSTNPTSTVIYKTLISIKAGNSIVFSPHPNALKAILETVRIISE
                     AAEKAGCPKGAISCMTVPTIQGTDQLMKHKDTAVILATGGSAMVKAAYSSGTPAIGVG
                     PGNGPAFIERSANIPRAVKHILDSKTFDNGTICASEQSVVVERVNKEAVIAEFRKQGA
                     HFLSDAEAVQLGKFILRPNGSMNPAIVGKSVQHIANLAGLTVPADARVLIAEETKVGA
                     KIPYSREKLAPILAFYTAETWQEACELSMDILYHEGAGHTLIIHSEDKEIIREFALKK
                     PVSRLLVNTPGALGGIGATTNLVPALTLGCGAVGGSSSSDNIGPENLFNIRRIATGVL
                     ELEDIRKEENQATSELPVDADALIQSLVEKVLAELK"
     gene            complement(26465..26986)
                     /locus_tag="U0342_000148"
     CDS             complement(26465..26986)
                     /locus_tag="U0342_000148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2421530.1"
                     /translation="MPNEALGLIEVTGFLGAVVAADTCLKAANVELIQCEVIRGGLTT
                     VELTGDVGAVNAAIEAGKAATEDLGCLVSSHVIARMSEDTKALFVPQEEVKTQPKEVE
                     QEEPKEVIQQVVEVNTNTKSAEKKLRAMKVIDLRKLAYTLNNVPIPKSKIKYANKDKL
                     VHALKDIYGRSEN"
     gene            complement(27001..27654)
                     /gene="eutL"
                     /locus_tag="U0342_000149"
     CDS             complement(27001..27654)
                     /gene="eutL"
                     /locus_tag="U0342_000149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutL"
                     /protein_id="HEM2421531.1"
                     /translation="MKNDKLPASVLSVKVVSNVDNGLFKQLDLKPHQRSLGIITSDCD
                     DVTYTALDEATKAAEVDVVYAKSMYAGAGNASTKFAGEVIGIIAGPSPAEVKSGLSVA
                     VDFIENGASFVSANEDDSVPYFAHCVSRTGTFLSKEANVAEGEAIAYLIAPPLEAMYA
                     LDAALKAADVTIGAFYGPPSETNFGGALLTGSQSACKAACDAFKMAVENVAENPLQY"
     gene            complement(27677..28558)
                     /gene="eutC"
                     /locus_tag="U0342_000150"
     CDS             complement(27677..28558)
                     /gene="eutC"
                     /locus_tag="U0342_000150"
                     /EC_number="4.3.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutC"
                     /protein_id="HEM2421532.1"
                     /translation="MNEQELKQMIEGILTEMSGGKTTDTVAAAPTKSVVETVITEGSI
                     PDITEVDIKKQLLVPEPADREGYLKMKQMTPARLGLWRAGPRYKTETILRFRADHAVA
                     QDSVFSYVSEDLVKEMNFIPVNTKCQDKDEYLTRPDLGREFDNEMVEVIRANTTKNAK
                     LQIVVGDGLSSAAIEANIKDILPSIKQGLKMYNLDFDNIIFVKHCRVPSMDQIGEITG
                     ADVVCLLVGERPGLVTAESMSAYIAYKPTIGMPEARRTVISNIHSGGTPPVEAGAYIA
                     ELIHNMLEKKCSGIDLK"
     gene            complement(28578..29942)
                     /locus_tag="U0342_000151"
     CDS             complement(28578..29942)
                     /locus_tag="U0342_000151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase subunit EutB"
                     /protein_id="HEM2421533.1"
                     /translation="MILKTNLFGHTYQFKSITDVLAKANEEKSGDRLAGVAAESAEER
                     VAAKVVLSKMTLGDLRNNPVVPYETDEVTRIIQDQVNDRIHDSIKNWTVEELREWILD
                     HKTTDADIKRVARGLTSEIIAAVTKLMSNLDLIYGAKKIRVIAHANTTIGLPGTFSAR
                     LQPNHPTDDPDGILASLMEGLTYGIGDAVIGLNPVDDSTDSVVRLLNKFEEFRSKWDV
                     PTQTCVLAHVKTQMEAMRRGAPTGLVFQSIAGSEKGNTAFGFDGATIEEARQLALQSG
                     AATGPNVMYFETGQGSELSSDAHFGVDQVTMEARCYGFAKKFDPFLVNTVVGFIGPEY
                     LYDSKQVIRAGLEDHFMGKLTGISMGCDVCYTNHMKADQNDVENLSVLLTAAGCNFIM
                     GIPHGDDVMLNYQTTGYHETATLRELFGLKPIKEFDQWMEKMGFSENGKLTSRAGDAS
                     IFLK"
     gene            complement(29984..31405)
                     /gene="eutA"
                     /locus_tag="U0342_000152"
     CDS             complement(29984..31405)
                     /gene="eutA"
                     /locus_tag="U0342_000152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine ammonia-lyase reactivating factor
                     EutA"
                     /protein_id="HEM2421534.1"
                     /translation="MTETILSVGIDLGTSTTQLILSELEIQNMASSFTVPRIVISDKR
                     IIFRSEILFTPILADNLIDVEAIRDFVTKEYANAGIKKEEIGMGAVIITGETARKDNA
                     SNVLDAMSGFAGDFVVATAGPDLESIIAGKGAGAHTYAKENNTSVVNLDIGGGTTNLS
                     LFDRGELIDTACLDIGGRLIKVDRETRKITYIAPKIQALIEKRGYPVKLGETTSPENL
                     QPVLGEMVELLKNSVGLGAPNDFYETIITNKGLKFLTEIECISFSGGVADCISTGALS
                     DPFRYGDIGLLLGKAIAESSLMTEKKYIESVETIRATVVGAGSHTAEISGSTITYTEK
                     IFPVKNIPILKLAKQEEDENMAEVIKEKLSWFKIENEMEHIALAIEGENSPSFQQVTE
                     YAKAICEGMKEPIALGHPLIIITWHDMAKALGQSIFGHLPAGHPLICLDSVKVDNGDY
                     IDIGKPVADGKVLPVVVKTLVFN"
     gene            complement(31495..32952)
                     /locus_tag="U0342_000153"
     CDS             complement(31495..32952)
                     /locus_tag="U0342_000153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2421535.1"
                     /translation="MTKTIREMCLRYTDLSEHDIEELIHTAKSLSVSAMYQDVDVFID
                     VYNKLTSEALVIHHTPPKTTKSLYKNKVVGETALRSNEPGVLRTLETGMNSNDLLAKT
                     QENVLIRQKVYPIRNKQRVIAVLILENDISAEIKAHFEIDNEETAYRDVSTTLSAMSK
                     LTDSITDQLDDAILIFDRNGILQQKNCAADQYYERLGYMEDIQGMHYDNLSLDQMMFD
                     AIMYQIETGKQPIQLKKEVVIAGNYFIMKQIFVKEEDEQECRFILILHDITDIKVKEA
                     EIVSKSVAIREIHHRVKNNLQSVVSLLRIQGRRSTSVEAQKILNESVSRILAIAATHE
                     LLSKQMEDGINLYMVIETVAYNIERCCTDCPKVAVRMDIDKRIYLDSDRTVALALVMN
                     ELLQNSYDHAFHPNESGEILLQIKEEKNIIHAEVTDNGHGFNVRKVSEKSLGLSIVKS
                     YIKDKLRGKVTIESNEHGTKTMFDFKYNSIHATKK"
     gene            complement(32945..33526)
                     /locus_tag="U0342_000154"
     CDS             complement(32945..33526)
                     /locus_tag="U0342_000154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ANTAR domain-containing response regulator"
                     /protein_id="HEM2421536.1"
                     /translation="MTGMNGRIVIADDEPITRMDIRDILEEANYNVVGEATDGFEAIE
                     LCKSHQPDLVIMDIQMPLLDGLKAGKRIISEGLAGGIILLTAFSDPKNTEKAKGFGAL
                     GYLVKPLDEKSLIPTVEMSIAKGRETRKLEQQLEKLTKKLEERKVIEKAKGVLMIENN
                     ITEEEAYNMIRNLSMDKRCPMMEIAETIVMSDD"
     gene            complement(33801..34940)
                     /locus_tag="U0342_000155"
     CDS             complement(33801..34940)
                     /locus_tag="U0342_000155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM2421537.1"
                     /translation="MQKVSFKTDLYIGQGATDRLLDFKDKQIFIVTDPFMVSSGMINA
                     ITEKIDPSNTYTIFSEIIPDPPIENVVAGIEVLNECDANLMIAIGGGSAIDAAKAMKF
                     FGQKLGTVRAMPFIVIPTTSGTGSEVTSFSVITNKEKAIKYPLITDAILPDEAILDAD
                     LVKSVPPAITADTGMDVLTHALEAYVSTKANDYSDAMAEKVIQLVFTYLERAYKDGND
                     LEAREKMHNASCLAGMAFNITSLGLNHGIAHTAGAKFKIPHGRMNTLLLPHVISYNAG
                     ITSDFGNNPDNRAAERYTAIAKLLKMPASNTRLGVRSLINAIKQLQKKLNMPTTLTEC
                     GISRTDLNENIAQIAEGALNDGCTATNPRIPTETDVSAILEKMLA"
     regulatory      complement(35358..35501)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(35530..36405)
                     /locus_tag="U0342_000156"
     CDS             complement(35530..36405)
                     /locus_tag="U0342_000156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization protein"
                     /protein_id="HEM2421538.1"
                     /translation="MVIKARCPASCGELLQGWILGGEKLISYPINWYSEVTLSDKVGL
                     NNSGHTKAWLAFQTTCEYFGVAKRDLPQVSLQVKSTIPVAKGMASSTADIAATIGATA
                     KWLNKSISEAEIAKLCLQLEPTDSTIFESLTLFDHLRGDIIQSSNWMPKLGVVVLEPL
                     TILETATYRQENHQAQLLKNEGHLAKGMDYFQQAVTQKSIHLLGKAASVSAACNQTIL
                     PKPFWREIVEVTENLDLVGLNVSHSGTVVGILYELEKTDPLEILFELERRYVTTFYSR
                     YYFREFVSGGVQIIS"
     gene            complement(36395..37480)
                     /locus_tag="U0342_000157"
     CDS             complement(36395..37480)
                     /locus_tag="U0342_000157"
                     /EC_number="4.1.1.81"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine-phosphate decarboxylase"
                     /protein_id="HEM2421539.1"
                     /translation="MKITTASHGGNYNELAKQHGLTKEMVLDFSANINPLGVPASLKQ
                     TITTNLDKLVEYPEPDYLALRARIASFHQLDLANVIPGNGATELIFGIAKVTKAQKVL
                     LLAPTFAEYERAFFDAEIVYAELTKETNFAAAQIVLEMLEQDTDIEAVCLCNPNNPTG
                     QLIAQQEMIKIADLCEKRNIYLIIDEAFMDFLEENETISMINYLEKFPHLAIIRAFTK
                     FFAIPGLRLGYLLTKNDLLAEALMQMREPWSINTFADLAGQMLLEDEAYIRQTFDWIN
                     AERDFLYRGLSKFSALTVYRPSVNYIFFHLEKPFDLRKKLLLKGIFIRSCANYRGLTE
                     NYYRVAVKSREDNRQLLTALEVIFSGN"
     gene            complement(37494..38687)
                     /locus_tag="U0342_000158"
     CDS             complement(37494..38687)
                     /locus_tag="U0342_000158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM2421540.1"
                     /translation="MHKIMAINAGSSSLKFQIFTMPGEEVLVKGLIERIGLPDAIFNM
                     SFQNEKIKEIRAINNHGEAVEILLEQLKAHQVINDLSEITGVGHRVAHGGEDFVTSCV
                     VTDEVVKGIEAVTNLAPLHNPANIIGIKTFRELLPNAVSVAVFDTAFHQTIPEENFLY
                     ALPYELYEKHHIRKYGFHGTSHKYVAGKAAEVLEKPLEKLKIISCHLGNGASVCAIEA
                     GKSVNTSMGFTPNAGLMMGTRSGTIDATIIPYLVDELGYSLDEVMHMMSSESGVLGVS
                     GISSDFRDIEIAAKEGNSRALLTLRMFTGQICNYIGAYASAMNGCDALLFTAGVGENS
                     PLIRQMVTEQLSYLGVTCHVTKNNAGDMIISNDDEAVKVCIIPTNEELMIARDVEKYA
                     KQTIS"
     gene            complement(38753..39457)
                     /locus_tag="U0342_000159"
     CDS             complement(38753..39457)
                     /locus_tag="U0342_000159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM2421541.1"
                     /translation="MSAYLAEFIGTMVLIMFGNGLLAGLTLNKSLSQGANWVVVTFGW
                     GFAVMIGIYVAGAYSGAHLNPAVTIALAVGGSFPWADVVPYIIAQIAGAFVGASIVIL
                     HYYPHFKATPPEIDTHGIFSTGPAIRNTPFNLISEIIATFAFIFGLLMIGANSFTDGL
                     NPLILGFLVVAIGMSFGPTTGYAINPARDLGPRLAYFLLPVPNKSGSDWRYAWIPIVG
                     PIIGGLLAIGLFNILL"
     gene            complement(39485..40603)
                     /locus_tag="U0342_000160"
     CDS             complement(39485..40603)
                     /locus_tag="U0342_000160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM2421542.1"
                     /translation="MNSFQIKTKVAFGTNSLQVLKEIKNKNVWIICDRFLADGEGLQG
                     LIGQLDTSNNVHIFTDVVPDPPISKVAGGVSEAGKIQPQVMIAFGGGSAIDTAKGIYY
                     FAKRLEKINISTFIAIPTTSGTGSEVTAATVITDPTTKIKYPLFLDELIPDMAILDAQ
                     LVVTVPPAITANTGMDVLTHAIEAYVSKDASDYTDALGEKSVQLTLRFLTSCYDDGRN
                     LANREKMHNASTMAGMAFNCANLGLNHSIAHQLGAQFHVPHGLANAILLDAVIRFNAF
                     KNRETEQKYAEMARICGIASRSDSNETAVRLLRERIVAMMEHMQMPRTLTDAGVAKEK
                     VYAKMDEIATNALKDACLPTSPTTPSHQELKEILEQII"
     gene            complement(40619..42028)
                     /locus_tag="U0342_000161"
     CDS             complement(40619..42028)
                     /locus_tag="U0342_000161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde dehydrogenase EutE"
                     /protein_id="HEM2421543.1"
                     /translation="MESLELEQLVKKVLLEKLAEQKDAPVKTTVKGAKSGVFDTVDEA
                     VQAAVIAQNNYKEKSLEERRNVVKAIREALYPEIESIAARAVAETGMGNVADKILKNT
                     LAIEKTPGVEDLYTEVATGDNGMTLYELSPYGVIGAVAPSTNPTETLICNTIGMLAAG
                     NAVFYSPHPGAKNISLWLIEKLNTIVRESCGIDNLVVTVEKPSIQAAQEMMNHPKVPL
                     LVITGGPGVVLQAMQSGKKVIGAGAGNPPSIVDETANIEKAAADIVDGASFDHNILCI
                     AEKSIVAVDSIADFLMFQMEKNGALHVTNPSDIQKLEKVAVTDKGVTNKKLVGKSASE
                     ILKEAGIVCDFSPRLIIVETEKTHPFATVELLMPIVPVVRVPNFDEALDVAIELEQGL
                     HHTATMHSQNISRLNKAARDMQTSIFVKNGPSFAGLGFRGEGSTTFTIATPTGEGTTT
                     ARHFARRRRCVLTDGFSIR"
     gene            complement(42035..43030)
                     /locus_tag="U0342_000162"
     CDS             complement(42035..43030)
                     /locus_tag="U0342_000162"
                     /EC_number="2.5.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cob(I)yrinic acid a,c-diamide
                     adenosyltransferase"
                     /protein_id="HEM2421544.1"
                     /translation="MSIYTKTGDKGTTALFDGNRVKKYDDRVETYGSFDELNAEISVA
                     EKFVTSAENKTLLRNVERQLFYVCAELATEHEASLASKIIITENDINQLEKVIDDYTA
                     KLPKVDSFVLPGSSTAGAFLHSARTVARRGERLLVRLSEQTAIRKELLKFVNRLSDFL
                     YILAREEDFRQMLDKATKLIVAKYLEQTGQEKSVTSDLSFSFCEKLMHQVCIVSEEIG
                     VPVTLAIVDAHGNARFNYRMEHALLVSAELATKKAYSAVAMKTSTEKLTEAVQPGAPL
                     YQLETLTNGDIVTFGGGVPIYGKDGAIIGGMGISGGSVEEDIHIAKKALSMIEKG"
     gene            complement(43045..43308)
                     /locus_tag="U0342_000163"
     CDS             complement(43045..43308)
                     /locus_tag="U0342_000163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutN/CcmL family microcompartment protein"
                     /protein_id="HEM2421545.1"
                     /translation="MFMAKITGSVVSTKKEDSLTGKKLMIVQPVDANGEHVRSEEVAC
                     DSVGAGIGEYVLVARGNAARSVFAEPNSAIDSAIIAIVDSFDK"
     gene            complement(43313..43792)
                     /gene="pduM"
                     /locus_tag="U0342_000164"
     CDS             complement(43313..43792)
                     /gene="pduM"
                     /locus_tag="U0342_000164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PduM family microcompartment protein"
                     /protein_id="HEM2421546.1"
                     /translation="MIEKLVKIIVQRLKLRATNKTSIAISKLPRDPVAIFIESGTIRL
                     TQVNKHFLERILSGNRAESLTAWFEKATDYGVTIELELYDNGEPWLDYTMLSQLEFPV
                     FTNKGERLFHSNGQVICYGDSAVIPSGSTLCKYKKQLITPLANEYLTKNNIAVRERQ"
     gene            complement(43789..44628)
                     /gene="eutJ"
                     /locus_tag="U0342_000165"
     CDS             complement(43789..44628)
                     /gene="eutJ"
                     /locus_tag="U0342_000165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutJ"
                     /protein_id="HEM2421547.1"
                     /translation="MDILQTANERMEQLAALMNKDIKQKVSADQKVKVGVDLGTSSIV
                     FVVLDEHDVPLFGAFEFADAVRDGLVVNYRESVEVVTRLKERAEKCLGITLTHASGAI
                     PPGTVGNNKKVVANVIESAGMEALYTIDEPTAAAAVLGLQDGAVVDVGGGTTGISVFE
                     NGEVIYTADEPTGGTHMTLVLAGYYGVPVEKAEQNKREQKDSSEHFSVMRPVVEKMAE
                     ITRVHLEKSPSEPLYIVGGASAYSQFKDTFESYLKTPVFQPNYPQYVTPLGIAMSSGS
                     ENL"
     gene            complement(44649..45284)
                     /gene="pduL"
                     /locus_tag="U0342_000166"
     CDS             complement(44649..45284)
                     /gene="pduL"
                     /locus_tag="U0342_000166"
                     /EC_number="2.3.1.222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate propanoyltransferase"
                     /protein_id="HEM2421548.1"
                     /translation="MEREELKAIIKQIVTDKLSGVETEIPIGVSNRHIHLTENDYNQL
                     FPNEPIQVKKWLKQPGEFAAEQTLTVVSEKGELHRVRILGPLRKFSQVELSKTDARML
                     GMKIPIRVSGDIDGTPGIKLVSKHSEICLPKGAIVAKRHIHLPESVAHEYGVKQGDEV
                     SVLVGSEMRSLVLNHCTIRVNNQFIPEMHIDTDEANAADIAGTCFAKIIKS"
     gene            complement(45288..45563)
                     /gene="pduA"
                     /locus_tag="U0342_000167"
     CDS             complement(45288..45563)
                     /gene="pduA"
                     /locus_tag="U0342_000167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduA"
                     /protein_id="HEM2421549.1"
                     /translation="MNNALGMIETKGLVGAIEAADAMVKAANVSLVGYEKIGSGLVTV
                     MVRGDVGAVKAATDAGAAAARNVGEVQSIHVIPRPHNDVETLLPKGL"
     gene            complement(45588..46025)
                     /locus_tag="U0342_000168"
     CDS             complement(45588..46025)
                     /locus_tag="U0342_000168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2421550.1"
                     /translation="MHQAIGMIEIKGLASAITVADTMAKVANIQLVDTEKAKGFGWIT
                     VKVEGDVAAVNAALEAGEQTAIASDSFIAKKVIPRPGEEIFTVFWPKEEIEPEQPEVM
                     VETEKVEETEVPAEATCNLCHDPLCPRVKGDPRQDCIHFEEEK"
     gene            complement(46038..46385)
                     /locus_tag="U0342_000169"
     CDS             complement(46038..46385)
                     /locus_tag="U0342_000169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol dehydratase reactivase beta/small
                     subunit family protein"
                     /protein_id="HEM2421551.1"
                     /translation="MIPVVSKPAIYFHADVDANPDSIKQVLFGIEEEGIPCELEIMSL
                     KDEVQAAFRASASSPLLVGVTLKNDHLVIHYRNLPPDKPLFSAYRFCATTLENQRNMG
                     MNAARLVKGVPFK"
     gene            complement(46382..48202)
                     /locus_tag="U0342_000170"
     CDS             complement(46382..48202)
                     /locus_tag="U0342_000170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diol dehydratase reactivase subunit alpha"
                     /protein_id="HEM2421552.1"
                     /translation="MKYIAGIDIGNSTTEVALAMANSSKEAAFVASAITDTTGIKGTK
                     QNLHGIFKALRLALEKVNATTENLAEIRINEATPVIGDVAMETITETIITESTMIGHN
                     PKTPGGLGMGSGVTVLLDDVTSKSKDEDYIVIIPKTVDFEDAAKQINTYVENGYQITA
                     AILQADDGVLVHNRLNHKIPIVDEVGFIDKVPVDMLAAVEVAAPGKVIETISNPYGIA
                     TVFHLNSDETKNIIPVARALIGNRSAVVIKTPEGDVKARTIPAGHIELQSGSRTQRVN
                     VAEGSEKIMQAIMSLPKLDNASGEPGTNIGGMLEKVRQTMAGLTDKLPADIFIQDLLA
                     VDTFVPVDVQGGLAGEFSMEQAVGIASMVKSDHLQMAAIASEIEQELQVSVKIGGAEA
                     EAAILGALTTPGTNTPLAILDLGAGSTDASIINGKGEIIATHLAGAGDMVTMIIQSEI
                     GLEDRYLAEDIKKYPLAKVESIFHIRHEDGTVQFFDTPLSPTVFAKVVIVKQDGFVPI
                     PGDVSIEKIKLIRRSAKERVFVTNTIRALKYVSPTGNIRDIPFVVIVGGSALDFEIPQ
                     LITDALSHYSLVAGRGNIRGKEGPRNAVATGLILAGGAKA"
     gene            complement(48248..48760)
                     /locus_tag="U0342_000171"
     CDS             complement(48248..48760)
                     /locus_tag="U0342_000171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diol dehydratase small subunit"
                     /protein_id="HEM2421553.1"
                     /translation="MNQEALENMVRNILQEVNSGAVSTTTSQKVSGDTLTVRDYPLGT
                     KRPELVKTSTSKSLDDITLKSVLDGTIKPEDVRVTAETLKMQAQVARDAGRATLANNF
                     ERAAELTIVPDERILEIYNAMRPYRSSREELLAIADELESVYHATICSNYVREAAQLY
                     QERKKLKGDN"
     gene            complement(48777..49436)
                     /locus_tag="U0342_000172"
     CDS             complement(48777..49436)
                     /locus_tag="U0342_000172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol/glycerol family dehydratase medium
                     subunit"
                     /protein_id="HEM2421554.1"
                     /translation="MVEINEKVLRGIISEVLDELQLKEDKVSFQKEQPSVAVSDESFL
                     TEVGDAEPGRQKDEVVIAVAPAFGKYQTKNIVGVPHKQILREVIAGIEEEGLKARVVR
                     VFRSSDVAFVAVEGDKLSGSGICIGIQSRGTALIHQKDLQPLSNLELFPQAPLITLET
                     YRAIGKNAAKYAKGESPNPVPMVNDQMARPKFQAKAALLHIKETKHVVQGKNAVELQV
                     N"
     gene            complement(49474..51138)
                     /locus_tag="U0342_000173"
     CDS             complement(49474..51138)
                     /locus_tag="U0342_000173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol/glycerol family dehydratase large
                     subunit"
                     /protein_id="HEM2421555.1"
                     /translation="MKSKRFEELAKRPVNQDGFVKEWIEEGLIAMESPNDPKPSIKIE
                     NGKVVEMDSKKLADFDLIDHFIAKYGVDLSRAEEVMQMDSVKLANMLCDPNVPREKIV
                     LLTTAMTPAKIVEVVSQMNVVEMMMSMQKMRSRRTPTTQAHVTNLRDNPVQIAADAAE
                     AAIRGFDEQETTVAVVRYAPFNALSLLVGSQTGRGGVLTQCSLEEATELELGMRGLTC
                     YAETISVYGTEPVFTDGDDTPWSKGILASAYASRGLKMRFTSGTGSEVQMGYAEGKSM
                     LYLESRCIFITKAAGVQGLQNGSISCIGIPGAVPSGIRAVLAENLIAVMLDLEVASGN
                     DQTFSHSDIRRTARLLMQFLPGTDYISSGYSATPNYDNMFAGSNFDADDFDDYNILQR
                     DLKVDGGLTPVTEEEVVAVRNKAARVIQAVFDKLGLPEVTDAEVEAATYARGSKDMPE
                     RNMVEDIKAAAEMMDRGVTGLDVVKALSAGGFDDVAESVLNMLKQRVSGDFLHTSAII
                     DKDWNVISSVNDLNDYAGPGTGYRLEGERWEKLKDIAVAVDANELE"
     gene            complement(51157..51960)
                     /gene="pduB"
                     /locus_tag="U0342_000174"
     CDS             complement(51157..51960)
                     /gene="pduB"
                     /locus_tag="U0342_000174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduB"
                     /protein_id="HEM2421556.1"
                     /translation="MSEQNKLIDEILKQVMETVNDAPEKLVEDGGSRQMSEKAVQLTE
                     FVGRAIGDTIGLVIANVDGQLLEAMKLEKSYRSIGILGARTGAGPHIMAADEAVKATN
                     TEVVKIELPRDTKGGAGHGSLIIFGGDDVSDVKRAVEVALNELDKTFGDVYGNEAGHI
                     ELQYTARASHALNTAFGAPVGKAFGLMVGAPAGIGVVMADTAVKSANVDVVAYSSPAD
                     GTSFSNEVILCISGDSGAVRQAVISAREIGKKLLGALGDEPKNDRPSYI"
     gene            complement(51953..52240)
                     /gene="pduA"
                     /locus_tag="U0342_000175"
     CDS             complement(51953..52240)
                     /gene="pduA"
                     /locus_tag="U0342_000175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="propanediol utilization microcompartment protein
                     PduA"
                     /protein_id="HEM2421557.1"
                     /translation="MQEALGLVETKGLVGAIEAADAMVKSANVTLTGYEKIGSGLVTV
                     MVRGDVGAVKAATEAGAAAARNVGTVMSTHVIPRPHTDVEEILPVRVKSDE"
     gene            52543..53427
                     /locus_tag="U0342_000176"
     CDS             52543..53427
                     /locus_tag="U0342_000176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PocR ligand-binding domain-containing protein"
                     /protein_id="HEM2421558.1"
                     /translation="MLLQSKSNEMLIEKVMDEFSAATSLASVVVDIHGTEVSRLCNFT
                     PFCQLIRSNPKYRSLCQKCDMFGGLEASKTGKPLIYRCHAGLTDFSVPIVVENQLSGF
                     LLSGQVICEESSEVGNIQAEETDWKNDKELISAFRSVPVFSSKKINSSAEMLTIISQY
                     YLKSEMEKSREEQKQKIVFHHAKIAHHEENKEIRKALKYIEKNLNRPITLDEVASHVY
                     LSSYYFSKLFKKEMNVNFINYVNQKKMSLAKEMLKNPRLSIDNIARNLGFTQTSYFCK
                     VFRKEFEVTPKGYRETLK"
     regulatory      complement(53581..53771)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00174"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="cobalamin riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="adenosylcobalamin"
                     /db_xref="RFAM:RF00174"
     gene            complement(53837..54412)
                     /gene="cobC"
                     /locus_tag="U0342_000177"
     CDS             complement(53837..54412)
                     /gene="cobC"
                     /locus_tag="U0342_000177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ribazole phosphatase"
                     /protein_id="HEM2421559.1"
                     /translation="MQLIFVRHGETDWNVAKKYCGQLDVALNENGIRQMEQLREKLEN
                     YSIDLVVTSDLMRVKQSANILSNAKTLRFPALNEMNFGDFEGYTYQEISTKFPKAWNE
                     YCNNWQTALFSNGESFPIFYERVVAILEEEMEKWQQLDTVLLVGHLGVLRVIALFLQK
                     QTIAQYWDIDFKQGCYSLWDNKSQHFLISNQ"
     gene            complement(54413..55159)
                     /gene="cobS"
                     /locus_tag="U0342_000178"
     CDS             complement(54413..55159)
                     /gene="cobS"
                     /locus_tag="U0342_000178"
                     /EC_number="2.7.8.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenosylcobinamide-GDP ribazoletransferase"
                     /protein_id="HEM2421560.1"
                     /translation="MKTLILLIQFFTRIPLPVQINMDEINLKKGSALLPFVGVIIGAW
                     NWLIFTLVALLMPLPVAIIAGLFAEIIITGGFHVDALADTADGLFSSRKRERMLEIMK
                     DSRVGANGVIAICFYFLFYGSLFLSVPDTQQIGWLFFVLPIVAKGVTMLLFAKMTYAG
                     SKEGLGSIFLGVPWWPVVIAQVIVLVALGAFFSYIGVIAYAGVILFTIIYRAFVYKRI
                     GGMNGDTLGAGGQMGQLICLFCLVLLWGLI"
     gene            complement(55161..55718)
                     /gene="cobU"
                     /locus_tag="U0342_000179"
     CDS             complement(55161..55718)
                     /gene="cobU"
                     /locus_tag="U0342_000179"
                     /EC_number="2.7.1.156"
                     /EC_number="2.7.7.62"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional adenosylcobinamide
                     kinase/adenosylcobinamide-phosphate guanylyltransferase"
                     /protein_id="HEM2421561.1"
                     /translation="MSEMMLVTGGARSGKSSFAEKEATKYNRVLYVATGIAFQNDTEF
                     QARIKKHQATRPEHWDTFEAFKGIAAYLERNGNKYDVIMLDCVTMLVTNLFFSLLGER
                     ELTNEIADEVEAGIQSEVRAILKAGEQSSAKFIFVTNEIGLGVVPENKLTRVFRDIIG
                     RINQQIATEVEEVYFVVSGIPKRWK"
     gene            complement(55711..56454)
                     /locus_tag="U0342_000180"
     CDS             complement(55711..56454)
                     /locus_tag="U0342_000180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-L-fucosidase"
                     /protein_id="HEM2421562.1"
                     /translation="MPQVRDLSVIDVPGGCVLTSCDISAGFGEKVHDGLRVAPEVTAR
                     LTLRVALLEMLASGAVVVAVSDVIGAEMEPTGKRVIAGLKDELIKADLGHIELNGSTE
                     ENMNVTQTSVGVLVTGFATKAALKLINVHEAAVLFAFGEPIVGAEVLQRMAEMPDYHL
                     VKKLVEHSDVLEVVPVGSKGMAYEANTLARLNDCTFKASDVFNEATMNKTAGPASVIL
                     VAVKASEVKAFEQNFPAAKCLGELRNYHE"
     gene            complement(56479..>56811)
                     /gene="eutP"
                     /locus_tag="U0342_000181"
     CDS             complement(56479..>56811)
                     /gene="eutP"
                     /locus_tag="U0342_000181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EutP/PduV family microcompartment system
                     protein"
                     /protein_id="HEM2421563.1"
                     /translation="VEYFQEMIDTPGEFVQHRQLYSALTVTAADASVIAILQSVTEKK
                     QTFSPMFASIFAKPVIGIVTKVDLAESEKDIERAERELRMAGAKHIFYISSLEETGIE
                     ELRAYLED"
BASE COUNT        15763 a        12521 c        10140 g        18387 t
ORIGIN      
        1 aagatgaatg tagtaattcc aatattgttt tccatttgaa acacgattaa caattcaata
       61 agtaaaaaca aactcactat cgcaccaaaa atcgtccaac gtttgcggat atttttgtaa
      121 agttgaatta gggaagtctc gtcagtgaaa atagcttcct ctgtttctcc aggagctaca
      181 gctttgcgga aatacatcca attgccattt aatactggat agctaaaaac agtctcccag
      241 ccagcatctt cgaaaagtgt tttgtaggca tcttcgtctc cttcattttc tttgaaatca
      301 atcgcatagc tgtatttcgc aggctctccc tgtttgaaat gatatctaaa agatttatat
      361 ttttgaaaga accaaccatt ttgtgccatt tcatttaaat aggcttcttc tttctccata
      421 ttgtccacgg taaaaaactt aacgactttt ttctccatta ttagacctcc cttgagtttc
      481 tatacaattc ttcgatgcgc gctttttcta attgcaaaat atctgtgcca atttcagtaa
      541 tttgatagat tttccgatta ctctcttctt gaataatttg gatcaaatta tctttgttca
      601 ttttggataa gcttccgtaa atagtcccgg gaccaagctt gattcgatca tctgtcatct
      661 ttgcgacgtt ttcgataatc gcgtaaccgt gccttggttt gacgagcgat agtaatatgt
      721 aaaaagcggt ttcggtcatt ggaagatagg ctttccgtaa tttttcattc ataactatat
      781 cgcacctcga tgtatttgat gcttataata tatcacggct cgatataatt tgcaataccc
      841 cattttttat ttcttgaaat accgtttttt ctttgataat tagccatttt gttggatttt
      901 gggccatttt tctagcaatt agtggttttg ttcgttggtc aaataaatcg tcccaataaa
      961 acattttctt taacatgttg aaccgaattg ggtaatgagc tgcttctaat cgtattaatt
     1021 gtttaatttg gcgcttaata atttgggagc ggatttgttt tttaggtaaa tcaagaaaaa
     1081 taaccacgtc cgcttggtta atgctctcgt ccacccatgc ttccaaatga acgccttcaa
     1141 taatccagtt ttcttgttga agaatcttat ttaatacagc tattttttca ttgtcggttc
     1201 gtcttacctc tgtttcttct cgtttccaga caatgcgatc tgtttcaaaa taatcgattt
     1261 gttgccactc ggaaagcttt tttgctagag tggttttgcc gcttccgacg gatccgataa
     1321 tacgaatttt cataaaaaaa cctcgcttta aattaattac tatcttttta ccccgctttt
     1381 attttataat tatctcattg tgataaaagg gagggaaatt tttgattata ttatttattg
     1441 tatcaggttt gttagctggg atggtattac cagttcaaac ggccatcaat acgcgactta
     1501 gtacatatac gaaatcaccg tttttagctt cgtgggtttc ttttatggta gggacaactg
     1561 ttttacttat cgtttgttta tttacacaaa aatcatggcc aatatcttca gaaatgattg
     1621 cctcaaatcc ttggtatatc tgggttggtg gtggaacatt aggcgttatt ttcttaacgg
     1681 ccaatatttt acttttacct cgacttggtt cggcacttct tgtgatgatt acggtttgtg
     1741 gacaaatgat tatggcgatt attattgata actttggttt atttcaagta ccaatgcatg
     1801 agattaatat cgaacgtcta cttggcgtta tcttaatgtt cggcggcatt tacttgatgc
     1861 aacgctttta aaaggaggag aaaacatgac aaaaagatca tccaaatcat tattactatt
     1921 tatggcaatg ggacttgttt ctggactact ttccccgatt caaacgtcga ttaatagcca
     1981 acttcggctc actgtcggtt ctccttttgt ggcatcattt atttcctttt tagttgggac
     2041 aacgttactt acgcttgttt gtttaattgt cgagcgtcgt ttgacttttc aactgaaagg
     2101 tgtcggccga attccttggt gggttttcac tggcggtgcg cttggagtgc tcttcgtaac
     2161 ttctaacatt ttacttttac cattactcgg ctcagcaatg acggttgttt tagcgctttg
     2221 tgggcaaatg attattgcac ttattattga tcattttggt tttttcgggg ttattcctca
     2281 tccaattaac cgttatcgta tgattggtgt tttattaatg cttgttggtg tatttttaat
     2341 tcaacgtttt taaaaaagga aaacctctcc ggctttgatg tctggagagg ttttttatta
     2401 tttcttttta ttgcggaaaa cgagttcgga atttttgtaa aaaatgtctg tttcaccagc
     2461 gcggtaattg acgactctgg caacggcaaa aaagtaatcc gataaacggt tgacgtattt
     2521 taatacttct tcgttacttg aagcaatttt taacataccg acgatttcgc gttcagctct
     2581 tcttgttacg gttctagcca tgtgcagtaa tgaggctgct tgcgttccac ctggtaggat
     2641 aaatttttct atttctgggg gttcatcggc gtagatgtca attcggtctt ctagccacgc
     2701 aacaggctca cttgttaatt tatacgcacg cttgccttct tcggttgcaa gatcccctcc
     2761 tgcatcaaat aattgctgtt gaatttgttc gagttcggct tgaatttctg gttcagcccc
     2821 aagtgttgtt atcgtgtagc caatcagcga attaagttca tccaaagttc catatgcatc
     2881 gatacggata ttatctttac ttactttgct acccccgata attcttgtca ttcctttatc
     2941 gccggttttt gtgtagatac gcatattttt tctcctttca tgattttttc tagttggtcc
     3001 atttgaatat ttgcttctaa aagggccgct agtttgtcgt attcttgttc tttgtgttct
     3061 ttcagattaa tgatttcatg cggataaacg gatttgtttt tacctgttag tagttcgtca
     3121 aatagatttc ctaagaaaac atcattgtcg aaaataccat gaatatatgt gccgatgata
     3181 tttttgttga cagagatagc gccatcttgg tgggtttctt cgtttccgtt caccgcttta
     3241 atttcgcaaa atggactagt gctctcgcct cgcttcgtct cacccatatg gatttcgtaa
     3301 ccttcaactg cttcacctga atgcgtcaca cctgtaattt gagtagtgcg tttttggtcg
     3361 agaaaaatgg tctcggtatc tagcaaacca agtccggcta tttctaattg tttactctcc
     3421 acttgattcg gatcgagcat ttttttaccg agcatttggt agccaccaca aatcccgatt
     3481 acttttccgg catttttagc atagttttga atggcatttt taagtccaga ttcttcgagg
     3541 aaagccatat cttctagtgt atttttactt ccaggaataa tgactaaatc tgggtttcca
     3601 aaatcagcta tattacggat gtagcgtaca cttatgtcgg gctggatttc cagaatatga
     3661 aaatctgtga aattagaaat cctcggtaaa caaataatcg cgatatcaag tagtgcgtta
     3721 ctatccggca cgtaattttt cccacttaga gaaacgctgt cctcttcttc cagttgtaga
     3781 ttggcataag gaatcacacc gataaccggg acatttgtga gttcctcaat catatcaatt
     3841 ccgggttgta aaagagctac atcgccacgg aatttattga taataacacc tttgattcga
     3901 gcccgctctt cttcatttaa cagcataatg gtgccgtata tcgaagcaaa aacgccacct
     3961 ttgtcaatat cagcaactaa gacaactggg gcatcgacca tttttgccat gcccatattc
     4021 acgatatctc ggtcgtttaa gttgatttcg gctgggcttc cagcaccttc tagtacaata
     4081 atatcatttt catctgctaa actctggtaa actgcctgga ttttcgggat aagggtttgt
     4141 ttgaaatcgt ggtacgtcac agcatccata ttatctaaaa ttgcacccat aaaaaccact
     4201 tgcgactgcc tgtcattggt cggtttaagt aacacgggat tcatccggac atctggaaaa
     4261 acaccagctg cttctgcttg aaaaacttgt gcgcgtccca tttcatctcc tgtcgccgtt
     4321 atgaaagaat tgagtgacat attttgagat ttaaatggaa caactcgctt tcctttattt
     4381 ttgaataggc ggcataggcc tgcaaccagt acacttttcc cggcatcaga agcggtacct
     4441 tgaatcatta tttgctttac cattaattag tcaccttccc cgtatgcgcg aaaaaatcgg
     4501 cttctttttt gaacagtgga tagccagctt gttgatgcaa tttgatgagc caaggctgta
     4561 ctaatcccgc ttgttcgaca ttacttttct ctaagaaaac gttgctcgtt tccccgtctg
     4621 tcaaaacgct tccgtccttc agcatataga cataatcaca aatttcataa attaaatcga
     4681 tatcatgact ggaaataagt attttctttc cttggcttgc aagacgttcg atgatttcca
     4741 tcatgatttt tttgccaatc ggatcaagac cagcagttgg ttcatctaaa agtaaccaat
     4801 ctgtatcaag aacaagggca cccgcaattg cgacacgttt tttttgaccg tagcttaaat
     4861 actggactgg tttatgctga aagtcctttg ccccaacaat gtctaatact ttcgtcactc
     4921 gtgcctctac ttccgtttcg ctaacaccta ggtttctaag tgcaaaggct acatcatcac
     4981 gaacattcga ataaaaaatt tgttggtcgg gatcttggaa aacgatgctt actttttttc
     5041 gtaaagcaaa taatgctttt ttcgtatacg cgagtggttt tccttcaaaa taaacggtgc
     5101 catcgctcgg tttgttaata ccaagtaact gcataaaaag cgtcgattta ccggagccat
     5161 tcgcaccaat aagtccgata atattgcctt tttctaaatc aattgaaaca tccgttaagg
     5221 cttgtttgcc atcttcgtat tggaatgaaa tatgttctgt tttaagcaaa ttggcttcct
     5281 cctagatatg aaattctcct tgatatagct tcacatcaag tgttataacc atttcattat
     5341 atcttttcat aacacgatta aataaagtat ttacgagcat gccaaatgaa cgataactat
     5401 tttttatgcc gtgataacca aaacgcaggc tctgcgcttt tcgaattgcc gccgcttcct
     5461 ctaagaaaat aaagataaaa cggtaaatta aaatggtcag ttcaatcagt acttttggaa
     5521 taaaaattcg cttcatcact tttgttaatt gtaccacggg aacggtcaag acgaaaaagt
     5581 aggttgcggc taagcaagcg atactccgga aaaagacttg tgttgccgtc gtaatagtca
     5641 cgtctgatac accgagatac aaactcccaa tcgaaatcga agcgagaaaa ctgcttggat
     5701 ctttagaaat cgaaatgaga atcgaaagta aactaaaaag tagaaatgaa aatggtaaaa
     5761 ggagccattt caaatattgt ttaaagtgaa ttttaacgac atagagcgtc aatggtacca
     5821 tgcagaagaa cagtattgct tggatgagca caggaccagt taacgcgagt attagaatcg
     5881 cgacataaaa taatgctttt aatgatggcg aaaaagctat ccaccggttt tgataagcat
     5941 atttatcaat ggttaacatc gttctcagct ttccgcttgc cacgacttac accaatgaca
     6001 tacgcgataa ttcctgttcc gatacaacct tgaagcgtaa ataataagct ttcaatttca
     6061 ccactttttg gttcataaag aggttcaaac cacggttcat agcttggatc gattttggtg
     6121 atttccgcct ctgcttcccc gtccgagccg ccgtattctc ccgttttatt gaagaagaat
     6181 ggactaacca ttaacaatac tactaataga attaaaatga cattgatatt tatttttttc
     6241 atcgtaattg tgccaccttt tctggtaaat ttttgctaat aagattgtac atgactaccg
     6301 ttagcaatcc ttctgcaatc gcaattggaa cttgtgtcac acagaaaatc gccatgaact
     6361 tcagaatgga tgccatcatg ccggatgctg gatctgggaa aacgactccg agctggacgc
     6421 tggtagttaa gtaggttgct aagtcagctg tcatcgcaca taagaaaatc gaaacacttt
     6481 tattacagtt taatttacga gcgagtttgt atacgacaaa accaaccatt ggaccgataa
     6541 ccgccatcga cattgcgttt gcgccaagag ttgtaatacc gccgtgtgca agtagtaacg
     6601 cttggaaaag taagacaatc acaccaagta cactgacaac gagcggtccg aacataacag
     6661 ttgcaaggcc aacaccagtc ggatgagaac aagatcctgt aacggacgga attttaagcg
     6721 ctgaaagaac aaagataaag gctgcgcata gtgccaacag taatttgttg tttttatcta
     6781 gggcaattaa tttacgaata cgaattaaac caagtacaag gaatgggata aatacaatga
     6841 accaaaagac agcccattta acaggtaaaa agccctccat aatatgcatt gcgtgtgcgg
     6901 attctgggtt cgttaaagta aaataaataa cacctattaa aacaaatggt agaaacttcc
     6961 ataatttttt catttatatt gctcccttct ttttttcacg ataatcgtgg taaagtatga
     7021 cattttttcg tctgggttta tctcgttcat gccgtatgtg attttttcag tcgccatggc
     7081 aacatcgctt actactactg ctgcatcaag taaattcagt ttttttagta atgtcgtaag
     7141 aaggggtaaa ttgcttgctg ctttcattaa gacaactgtg tcaaataaag tgagcgcttg
     7201 ttcgattttt tcagcacctg ctgttacagg gatgacagcg aaactttcct cgtccattac
     7261 gagtggtaat tcaatcttgg aggcgatatt ggaaaaggac gaaatacctg cgagtgtcac
     7321 tgtttcaatc tctcctttta ataattcgag taaatagcta taagtgctgt aaaccattgg
     7381 atcgccaagt gtgatgaaac caacatcatg cccgttttga acatctgctt tgatttcttc
     7441 ggcgatttct ttccatgcaa gcattttttc ttctttgttg taactcattg gaaaatggcg
     7501 ttctttaatg attaatgtat cttttaaata agggctgacg attttcttag ctaaactttc
     7561 gccgcctttt ttgggttgtg gcgtgtagag aatttctaaa tttccgagtc tttctgctgc
     7621 ttccatcgtg actaacttgc tatctccagg acctgtacca atgccgtaaa atttagccac
     7681 gtgctttcac cctttctatt gccgtgtgga tatgatcgat aaattgggct tgaataagcg
     7741 gattttcgcc tagaccttgc aaatgacatt cagtttgaat gccagcttgt tccagcgtgc
     7801 ttttccaaga atcctcgtca tcagaagcca tatcgttcgt agcgtgatca cctgctacaa
     7861 gcataaacgg cattaggtgc gcttttttta tatttgcttg ttgtaatcgt tcaattactt
     7921 ggtcaagacc agggtaactt tctaccgcac aaaggtaaat tggttcgttt aacaacatat
     7981 ggtcaaggca tgcataggcg ctgaaagcac gatgcttcga accatgtccc atgagaatta
     8041 gcgcttcttg ttcttttaaa ggtggcattt ggtggcgaat ggcttcgatt gctttttcgt
     8101 aatcttccat cgaatcaagt aacggttggc tgacaataat ggaatcgaaa tccggcttga
     8161 atttttccac ctgtgcagtg attttttcaa attcaccacc actaataata tgtagcgact
     8221 gaataatgac ttctttgtag cctaattcct ttagttggtt taatgcttgg cttggtgtgt
     8281 taatatgcat attgtcacga gtttttagtt ttttgatgat tttattggat gtgaatgcac
     8341 gaaacacgtt gtaatctggg aactcttggg ccactttttt ttcacaggct tcaatcgttt
     8401 tttctcttgt ttcaggataa cttgtgccaa aactaacgac taaaatcgct tttttcattg
     8461 tggtactcct tctaattttg ttttttggat tagttcaatt aagctctctg gtgtggcgct
     8521 ttcggcttcg ataaaattgt tgataccgaa tgatgctaac gttgcgctcg tgaaccttcc
     8581 aatggaaaga attgttttcg tttgtaaaat ggctttttct tcggttgtta gtacgtcgag
     8641 taaattttga acggaacgcg aacttgagaa acaaacttgt tcaaagcttg caaggtcaaa
     8701 tggtcgttct gtcacaggac gcatatcata taacggcatc atttccatcg cttccacttc
     8761 tgctaaaatt gcgttaactt ctgccgtatc aactatgctt ccgataatta agttgctcac
     8821 atttttctgt aaccgtggta aatgctccaa aattaattcc gtgctccgcc ttttaatgaa
     8881 actatctgga ataattcctt tttcactaaa agcttctttt gtttgtttgc caatagcggt
     8941 aagatgggta ttttttagag aacgaatatc taaatcaagc tgggctaaat aatcaaaaaa
     9001 tcgttctacc gcttctttgg atgtgaaaag aagtccgctt acttctctta gttcttcttt
     9061 tgttttcgtt ggcacaacat ctactacttg aatattggga tacattgtta cttctccgcc
     9121 taaatcgcga atttgttccg cgagcatact ttttccagct cgtgctcttg gaagtaatac
     9181 ttttgtatgg aaaagtggca tttcctcaaa gaagttaagc tgcggtcgta agctcaccac
     9241 atcaccaaca acaataagtg ccggcgaaga aataccagat tccgctactt tttgttcgat
     9301 gttttgtaag ttcccggtaa ccgttaattg tttgccgcga gatgcccatt gtacaatcgc
     9361 aacacccgtt tcggcttttc gaccattttc tagtaagttc gcacaaatat taggcaaatt
     9421 agtcattccc atcaggaaaa cgagcgtacc ttccagtcta gcaagggctt cccaatctag
     9481 tggatcgcgt ccttttttca aatgtccggt aatcacgtga aaactcgaag caaaattacg
     9541 atgtgttact gggattccag cgtaggcaag cccaccaatt gcggatgtga ttccaggaat
     9601 aacttcaaat ggaattcccg ctttatagag tgtctctcct tcttccccgc cgcgaccaaa
     9661 cacataaggg tctcctgctt ttagacgaac aaccagctca tttgtcgcag cttctttaac
     9721 aagaatttgc tcgatttcct cttggggaat tggatgatga agtggttctt ttccgacata
     9781 aatgagttta caactagctt ttcgttcttg gagcatcgct ggttcaacga ggcgatcgta
     9841 tacaataaca tctgcctttt gcagtgcagc taagcctttc acggttagca actgtgcatc
     9901 tccaggacct gcaccaatta acatgacttt tcccattagt agacctccaa ttgagttaaa
     9961 atttctggta gttcgcttaa atgatttatt tcgattggat aatttaattt tttgcgacga
    10021 atcacaataa ctggaatatt taattctgcg gcagctgcga gtttttcttg aaagccacct
    10081 tgttttccac tctctttagt gattaataca tctgccccag tcatttctag ttgagttcgg
    10141 ttcgcttctt tggtgaacgg tcctttcatg ccaatgatct ggtcggcaac gagacctagt
    10201 tcttcggctg aacgaattac atcagacact ggtaaaatac gagcgatgat atgtcgattg
    10261 tttaaaccag ctacgaattc tggtaaattt ttactaccag ttgtaagaaa gattcgtttc
    10321 ccaagtttca ttgcaactgc acaagcttcc tcaatatctg ctaccaaata agtattatct
    10381 gtttgttcac tagtgcgttc aaaacgaata taaggaatgt ccgcttcttt gcatgcctcc
    10441 atcgctgttt cagaaacaat ggtcgcaaat ggatgagtcg catcaataac gaggtgaact
    10501 tttgtagcat gccattttag gagcatttcc tcttttgata atctgccaca aaatacgttt
    10561 tcggcatgtt gtttcgctaa agtttctccg taatcggttg cgacagagag tataaaggct
    10621 tgcttttttt ccgttagcca gtcgctaatc gccaagctat ccgaagttcc tcctagcacg
    10681 aaaatcatag tgtgtaacct cgtggtgtga tcattttgcc atttttcacg taggtttctt
    10741 tgtttcctac aatcaccatc gttgtcatat ccactaactc ataatcaata tctcgcatcg
    10801 ttgtaatgat ttttcgctct tcttttcgac caacatcttt cacaatacca acaactgtgt
    10861 cccctgattt atgctccatc atcttttgaa aagcattggc caaatgattg gcgcggcctt
    10921 tacttctcgg attgtaaaaa cagacaacaa aatcggccat tgcagcgtgg gttagacgtt
    10981 tttcgattac ttcccatggt gtcattaaat cgcttaaact aatatggcaa aaatcgtgca
    11041 taattggcgc gccgagaaca gcagcggctc caatacttgc ggtaattcct ggaatcactt
    11101 tgacttctaa atctgggttg cttttttctg cgagttctaa aactagacca gccataccgt
    11161 aaattcctgc atccccactt gaaacaactg ctactttttt tcctgttagt gcaatatcaa
    11221 cggcttcttg gcaacgatcg atttcgcggc gcatgcctgt tttcactact tctttatctt
    11281 taattagctc tttgatgagt ttgatgtacg ttacgtaacc aacaatcacc tccgcgtctt
    11341 ctattgcttg cagtgcttca ccggtcatta atcgtttatc tcctgggcca attccgatta
    11401 cataaatcat tttgccacct cactattttt agttaatttc cctgctgcga aagtcacgcc
    11461 attttcagca aatcggcttg taacaacatt tccgttacta ccaatgtctg ctgacgatag
    11521 ggcgacattt cctacttgaa cagttttttg aacaaaagcg gatgttggat attttccagc
    11581 aactgtttgt aattcttctg ctggatggac aataaatggg acacgccatt tctccgctaa
    11641 atgaagaatt gccggttctt ccgcttttaa agtaatacta tgaatctcac ggaatgcccg
    11701 cgggtgtatg ttttcttgtt cacaaaaatg tgtaaatgct gcagctatcg tttccgctga
    11761 aacgcctttt ctgcaaccga ccccgaggat aaattgctta ggtaccagct ggatgcgttc
    11821 atgtgtcgcc acttgtagtt tatatttagt tgaaatgtaa acttgcgggc taacttcttc
    11881 cattgtaaaa ccgcgtgtat ctatatctaa tggctcatcg atgtacaatc caacttcttt
    11941 tcctgctgca agtaaaccat tgatgcgttt cgttgtcgct ttaaaatctg gtaaataacc
    12001 atttaattgt ttggcgatat tatcaatggc agctacattt gcgcggtctg ttgcggttgt
    12061 aattactgcc gcaccacctg ttatcgcagc gatttgttcg gttagttcat ttgccccgcc
    12121 aacatgtcct gaaagcaagc tgataataaa tttcccatgt tcatccatga caagtactgc
    12181 tggatcagac agcttgtctt ctatcgctgg agcaagcgtt cgaaccgcaa ttccagtcgc
    12241 cataatacaa atcaatgctt gatattttgt gaaaatttcg cgcatcgctg ttccaaaatc
    12301 cggcgttaaa gaatttgttt gctcattgca atgctttcct ggtacaaaaa tcgttgctgc
    12361 taccgttttt gttaacgtta ttgctaaatc gcgaccacgt tctgtgacag caataatcgc
    12421 cagtttatct gtattcatgt ttgaaatcct tgtcgtatag cttagaataa taaaactctt
    12481 ctccaaggaa atcaccgacc ataataagcg ccgttttcgt aattccagct tctgttactt
    12541 tttctgcgat atcttctaac gtgccggtta ctttcttttc ttccgcccaa gtcgctttgt
    12601 aaatgacagc tgctggggtt tctggtttat aaccgccttt gattaattct gaaacgactt
    12661 ttctaatacc ttgaacggac aagaaaatta ccattgaagt ttggtgcgcc gcgtatgaac
    12721 ggagggattc acgcgatggt actggagttc tgccagccat tcgggtaata attacactct
    12781 gacttacttc tggaactgta tactccaccc caaaactgct tgccgcgcca aggaatgaac
    12841 tcacacccgg tgtacatgtg aagggaatcg aacgcttttt catttcctcg acctgttcac
    12901 gaatcgaacc ataaatagaa aagtctccgg tttgcaaacg aaccacttct ttaccagcag
    12961 tcacgcccgc ttccatgcag tcgatgattt cgattaaatt catgcttgca ctattatgga
    13021 tttcgcagtc tggtttacaa tattctagca actccgggtt tacgagcgac cctgcataaa
    13081 taacgacatc cgcctctttt aataattgat atccttttaa ggtaattaac tctttatctc
    13141 ctggtcctgc tccgacgaaa tgtacttctg ccattttctt cactcctcta gttttttaca
    13201 gccaataatg acggttggat tttgtggttc aaaataatga cctgctccaa gtttatgcca
    13261 actcgaaact tggatttgtt tcatcgttaa ttcactcact gttaattttt ccaaatggtt
    13321 cattgcagtt aacgcatttt caagcaaaat aaaattaagt accaaaccgc ctcccgggtt
    13381 caaatgtgcc aacgaccagt cgataatatc ggttaaattg ccaccacttc caccaataaa
    13441 aatagcatca aatgtttcct tttcaggcaa ttcaattggc gcgtatgctt cgataactgt
    13501 tacattttct aatccaaatt tcgcttgatt ttgtttaatt aaatccactg catctgggtt
    13561 tcgttcaatc gcagtaactt ggattttcgg gaaattacaa gcaacttgaa gaccaacgct
    13621 cccagtcccc gctccaacat ctagtaattt ctttgacgta tcatctaagt taagtaaatc
    13681 aatgcttgcc gctcgcactt ctgcttttgt catcggtact ttaccacgaa taaaaacctc
    13741 atccttcatc tacaatcacc actacattca tatcgtattt ttttgctact tgttctggtt
    13801 tcaacttatg aattcgttcc tcttttgaac tcaaattttc tccaataaac aggatttttt
    13861 ttaatccacg ttgtaaaatt tcagcagcga tttcatatgg accaatgatt gtatctgtta
    13921 ccatcgcgac tttttcgtgt tgtaacaaga agtcgaagtt tggcgtttta ccgtggctgc
    13981 tcgtaataaa acagtcattc atcggtaatt gaattcgatg aaacatcatt tgaatcgcac
    14041 taattcccgg aacaatccgg acatcttctg aaaaatttgc cagcgcccag ttgccaatcc
    14101 catataatag tggatctccg gaagctagaa taaccacgtt tttgttttga tgcgggatgt
    14161 ttttcaaatc tgctagtttt tttggcaaaa gcattggcgt tgctgtcgtt agttctgtga
    14221 tttcttgtaa ttgtcttgtt gatccataca ctatttcggc ggtacttaac acttgttttg
    14281 cttcgtttat taccaaattt gtatctcctg gtccaatccc aactactgta atcatcgcca
    14341 ttcctcccgg agtacatcga tatctttcgt tgcagcaagc aacccacgtt cggtcgaaaa
    14401 agtaactaca tcgacttcca cactaggttt cgtgaatttc aaaaatcgtt ctgatcttgc
    14461 tttgattttt tgcacaatga cgtcatatac ttgggtaaag ccagcttctt caattaattc
    14521 gcctgctgcc tctgtcgtat tgcacttctc cactgcttgt aaaagcgata acggggcgcc
    14581 gagcaaagct aaattagcga ctaaaatttc cgcccgcgca tctgcatctt tactgtacgt
    14641 cgtaaaaatc cctgctgaaa ccttcaccaa tttgccaaaa tgaccaacca ttagcacttt
    14701 tttgaaagct agacgctgtg tttcttttaa catataacca acgaaattac tcatggaaac
    14761 aatatttccg cttgaaaaac caagcgtatt ctgaacaaaa tcatccccgt aattaccggg
    14821 aacaagaata atttggtcga gaccttgatt ccgtttcatt tcaagctcca tcgataagga
    14881 ttttttccag ccttcatccg acataggggt aacaatgcca gtcgttccta aaatagaaat
    14941 tccaccgata atccctaagt tgctattcat ggttcgtttc gcgcgctctt ctccttctgg
    15001 tgcatagact agtatctttg caccacgatt ttcgccaagc gattcgcgta cggttgctaa
    15061 aatatttttc cgcggtgccg gattaatcgc cgcttctccc actgcaacag aaattccttt
    15121 ttgtgtagcg cgaccgatac caacaccacc atctaatacg acttccgcgt tatcggttag
    15181 atcaacatct acaaaaatcc acattccgtg tgtcgcatca atatcatcgc caccatcttt
    15241 ttgaaccgct gctgtggctt tgtctttcga aaacttttga tacgccacgg ggatttccag
    15301 aatcgttccg ccagtagttg tgacttgtac tgcactcact tcttcttgcg ttagaatcat
    15361 ttccacacaa gctttagcag cagcagccgc acacgtacca gtcgtatagc ctttacggta
    15421 ttttttgccg ttataataaa taaaatcttc cattactcgt cgccttcttt acatcgtaat
    15481 caagattgca ttaatgatag ctgcagcaag attactaccg ccttttctac cgcgtgcgac
    15541 aatggctggg atatctgttt ctaaaatttc ctctttacat tcagccgctc cgacaaaacc
    15601 aaccggtact gccactactg catctgcttg caattcccca ctttctgtca tctcgataat
    15661 tttatacacc gcagttggcg catttccgag gacaaatagt ttcggtccat cttttaaaga
    15721 agcgagttta attccagcca tagagcgtgt aatcccatgc tgtttggcaa tctccatcgt
    15781 ctctgggtca ctcacataac aatgatattt acacccaagt tcatctaaaa gtcgtttatt
    15841 aattccacta agtgccatat tcgtatccgt gaaaatagtt cctttatttt gaagaacatg
    15901 aatgattttc gcgatggcat cttgttgaaa aacgaggcta tctaagtaat caaaatctgc
    15961 cgtcgtatgt attgcacgct tgataatcgc ttcctctaac ttgttttgaa atgtgtaatc
    16021 tggacgaata tcattaataa tttgttgaat aatttcaaag cttttctctt caattttggc
    16081 tggattctta atatagttca tcttgccact cctttaaaat aatagtagat aaatacttgc
    16141 aaaaatgata aaagcgatcg ttgaagccgt atatagcaaa tgaatcgttt ggctaatttc
    16201 tttttctgaa acgggtttat ttccacttcc aatggttggt ttaatgactg tttcaccgaa
    16261 gtactcatgc gttccaccaa gtgtgattcc aagcgctcct gctactgcac cttcaggata
    16321 agcgcaatta ggactcgtat ggtttttccg atctcgaagc ccgatttgcc aagaagcacg
    16381 cccgtcatac cttaaaataa aacttgcaat gacaaggaaa aaccaagcta atctcgctgg
    16441 gataaaattg gcaatgtcat ccattttcgc ggaaacaaaa ccaattgcgc ggtatttttc
    16501 gtttttataa ccgaccatcg aatccagtgt attaaccgct ttatacatca aagcaagtac
    16561 cggcccacca atgaataagt aaaaaagtgg tgcgataacg ccatccgctg tattttccgc
    16621 cacagtctct atcgtcgctt tactaatttc ttctgcggtt aacttatccg tatcccgacc
    16681 aacaatcatt cccacttgca ctcttgcagc agccaaatcc ccgtccgcca aggtccgctg
    16741 tattttccga gcctctttcg caaggcaagt catcgcaagc gtcgtatagc ctaagtaaac
    16801 aaaaacagct atgtaaagcc agtaagcaat tttggcacta agaaatagaa tgaaccagga
    16861 tacaactcca gtcataccaa ccgtgagaac aaatagcaat ccaccggcaa aatacagtga
    16921 tttaccatga aagatttttc gtaaaataat agtcaaccac ttaatcaagt tgccgatcgc
    16981 tttaatagga tgcggccagc tatatggatc acctaataag caatctaaaa tgaatgatga
    17041 cgtataaaat aacaatatca tcgctctatc gctccaaaca tatgcgttat tatcaataga
    17101 ttttgataga aatggatatg caggtaacta gcgaacgtat tacctttttg ataaccgccg
    17161 tgccattctt tgacaatttt gccatcccgc tttttcgtta atttcatacg tgttggttcg
    17221 gtcgtttcaa aaacagaatg atgaaattca tgaccgcgaa tagctgtccc ttttttacca
    17281 agtagtgtgt cttctaaagg ttcggcgata cagtagccaa acttccgaag ccgcgttgtc
    17341 atcttactaa ctccatcaaa aacccctacc atttcatagg attcagcttc catttctaaa
    17401 ctcgaaccaa gatacatcaa tccgccacac tcggcatata ttggcttgcc ttgttcatgc
    17461 gccgccaaaa tcgattcgcg cattgacttg ttcttcgcta gctgttccgc aaaaacctcc
    17521 ggaaatccac caccgatata aataaaatca gcgtccggaa cttccctttc ttctagcgga
    17581 ctaaacggaa tcagtgtggc tccagttgag cgaataaaat ccaagttatc ttgatagtaa
    17641 aaatgaaatg cggcgtcgag cgcataagca acgcgcactc ccgaaaagtc cggtacttgt
    17701 atttctggtg ggtgtacggt caatttcgca ccagtcttac taattgctaa caacctatct
    17761 aaatcaacat gttccgcaat caaatcacca agtaactccc atttcgtttc taattccgtc
    17821 atttcctctt ttggcactaa tccgagatga cgttctggaa gtgccaccgc cgcatttttc
    17881 ggcaaatacc ctaaaacagg tacatccgta tagcgttcaa tcgccccttt tatcaatgaa
    17941 aaatggtttt ctgaagcaac gcgattaata atcaccccag caatggttaa ttccggatca
    18001 aaacgattaa atccatccac aattgccgcc gcagaagtgg atatcgcttt accatccacg
    18061 actaaaatta caggcgtttt cgtgcattta gcaataaaag atgtactcga attatcacga
    18121 tcaataccaa gtccatcaaa aagacccatt acaccttcaa tgacggaaat atccgccgac
    18181 tctccgtgct tttgaaaaag agtagctagc atcgcatcat catctatcag aaaactgtct
    18241 aaattgatag aagcaacgcc tgttatcgct tgatgataat ttgtatcaat ataatctgga
    18301 cctactttaa atggttgaac ccgcagacct ctttttttta gcgcgtgcat aattccaagt
    18361 gtgatcgttg ttttacctgt accacttgat gcagctgcaa ttaagatttt gttcatcttt
    18421 tttcaccttt cactttagcc ataaaaaaag acgccaaaca gaacattggc gtctttttga
    18481 gatttacgca aataagctat ttccttgtag cacaaagaaa cttccccatc gtgaaaatct
    18541 acttaatcaa gacaactcgc tcccttagaa gttgtttttg gatatcgaat ataaaagcgg
    18601 tctcctgact taacatcatc ctactcacca gtcttcccgg aattgcttcc agtgacatat
    18661 gtttggtttt cgtccgtatt acagtagcta gggcctgtag aggattttca cctctttccc
    18721 ggattaatat attcacctat ttagttgttt agtacccggc aattcgtctt ttccagcgtt
    18781 ctggcaatac ttggtaaacg acttctgcga caaaaatgtt gcaaatcgaa ccaatagcaa
    18841 gcactgggaa caaaacaaac accgcttgat gcattaatgg ataaagtgca agtaatgata
    18901 atggacaatt aaaaacaaaa gcaacaatac tagaaacact aaccgcaact aattgattct
    18961 tttctgctag tttttggcgc gtaaagccat atgcaatcat cgttacgccc atcattccag
    19021 caacaatcaa atgaattggt agtgtgagcg gaaaacccgc tagtaatgct gatgttaaat
    19081 gaccgaaaat cccaagcact gctccgtaca tcggaccaag cagcaaagtc ccaataaaag
    19141 ctggggctgc gtcaaatgca actgaaccca ttaattttat gtttgcgcca attacacaca
    19201 ttgcaatcaa catcgcacat aagactaatt tttgaatttt caattgaaaa gatcaccctc
    19261 tcatgaaagc gttatttcca tttcattata tccctgttaa accactggta caaggtcact
    19321 tagagcactg aaaacaaaat agtgcaagct tttaaaatcc ctttttttct gttttatatg
    19381 gcaaaaatag ccaccagtgt gaactttttc tcaatttcta tttttgagat ttaaaaaatg
    19441 acaatatttt gttataaaaa agaatttatt gttctattta aaatgcagga ttaaacgtta
    19501 tttaaagcga ttttatggta taattagtgc agaaataaaa cagggaggga aggactttgg
    19561 agaaagaaaa agttgtaaat attcaacctt tgatggatag tcaagtagag agccaattca
    19621 cccaacaaat tcaagaagat ttcaacaaaa aaaatccaga tcactctgcc ctacttcatt
    19681 cacttgaaac cgttgaagtg cttgatgttt taagcgatta ttactctgca catgaaaaac
    19741 aaaaacaacc aagaaaagaa accactagcg taaacaaaac tggtaaagag cataaagaaa
    19801 tcaagcaagc tattcgttac attaaaaaaa acattcaccg ctccatcaca ttagaagaag
    19861 ttgctaatta tgtctatcta agcccgtttt atttaagtaa attatttaaa aacgaattaa
    19921 atattaattt tattaattac gtcaacgaac aaaaaatgct ctatgcgaaa gaacaactag
    19981 aaaaaagtga ctgggcggtc catacaattg ctaaaaattt aggtttttca agggcaagtt
    20041 atttttgcaa agtctttaaa aaagaattcg atatgacacc aaaagaatat cgcgactcct
    20101 taaaataaaa aacgatttca gccaaagccg aaatcgtttt ttattattat tatgactgcc
    20161 aatcagccgg ataagtaaca taaataaatc ttgcttcacc agttacggaa aacttgattt
    20221 ggctaccttt tggaatgaaa ataatttctc ctggacctgc tgaaacagtt cgaccatcaa
    20281 tgacaacatc tagtctgcct tcgataatgt agtctacttc atcataatcc aagaaccaat
    20341 cgaaagttgt atctttcatt tccattaaac caaaacctag acgtttactt tcttctagtg
    20401 ttactaagtc ttttgtataa acaacatcgc taggatttcc tgtgtctaat cgatcttcct
    20461 ctgaaacttt tactacagga agtttcaccg atagaatacc acttggatca acgtgtttgg
    20521 aactttggcc cattttttct aggacaactt gttttactag ttgctcaatt aattctttac
    20581 taatatcagc cattatcttt caccgccgtt tgttcttttg ctttattttt cttcatcatt
    20641 cggttagcca tatagatacc gacagctacg gcagttactc ctccgacaag ttttccaaca
    20701 atcatcggga aaatcatatc ttgggcaacc ccagctgtga aacctagatg atcccctaaa
    20761 acaaaggccg cagatacggc aaaagcaacg ttaataattt taccgcgctc atccatatct
    20821 tttagcattt ggaacattgg gatactattt gcaagtgtcg caaccatacc agccgctgca
    20881 acttcattca tacctagcaa tttacccatt ttcataagtg gtttattgaa cacttttgta
    20941 ataacaaaaa ctaaacagaa agctcctgct agaactagtg cgataccacc aacgatttcg
    21001 ataccttcgc caattggtgc aattcctgga ataatagtta atccagtaag ttgttgaata
    21061 gctccagcaa ctagcccaat agtagcaacg attactaccc cttttccaaa aatcgtgaag
    21121 cctttaatca tgccttctgg tttgaaccaa aggcctaaca taataagggc agctacaaga
    21181 ataattggta ctaagttttt gaaaatcatg attggagaga atccagctac aagtccaccg
    21241 attaaacaac caattggaat cgtaataata ccagataata cgccagttgc taaatattta
    21301 tgatcttctt ttttaataat tcctagtgct actggaatcg tgaaaacaat agtaggtccc
    21361 atcatggatc ctagaatagc tcccgcaaat agaccagcgt cgggagttag cgcaagttct
    21421 tgagctagcg caaaaccacc catgtcattc gcaagtaacg ttgttgcaaa cattgccggg
    21481 tcagccccaa gcgccgtata aattggtaca acaatcgggc ttaaaatttt tgctaaaact
    21541 ggcgctaatg taatgatacc gaccattgct agcgttagcg atcccattgc cataatacct
    21601 tcttcaaatt gtgcacctaa gccaaatttg ttgccgataa ttttgtcaat agctcctaga
    21661 atcataaaga ttaccattaa ataaataata atttcattaa tgctcaaaag tgttcctcca
    21721 ttctatagat agcgttttaa aagttcatca ggagaaggaa tgaccgtatg atgtatcacc
    21781 ttttttggtt cggcggtttc gattagaatc cgcatccctt cttgaatagc actaacttcc
    21841 cctgtaaaaa cagccacaaa tttcccacca atcgaagcac cgagcgtcat gcgtttcaaa
    21901 tgaatagccg attttttcag cgcttcattt actgcattta gtccagcgcc caactgactg
    21961 atttcgataa ttcctactgc gtcaacttcc actttagggt gtttattgtt tagaaaagca
    22021 agtaattctt cgtgcgccat atgcaaaata taagaagaaa catgaaattt gccagcttct
    22081 tcttttgcat cttgcatcgc actagtaagt tcaccggaag caccttgcaa aataatcaaa
    22141 aatttaccag gacatgtcgg acgaaaagta aataaagtta cattgcctgc tttcaagaaa
    22201 acatcggcca tttcgtaccc tttacttata ctcctgagtt caagaatacc taaggactgt
    22261 tcagccataa cgttctaccg agtcgataat gccgacgata catgcgtcca ctgggatcgt
    22321 gttgtcccca gtggatgctc gtgctgcgct accagttgta acgagcacaa gatcgccgtt
    22381 tcctgctccg gcattatcag ctgccactat ggaatgtctt acatcttccg tttcatcggt
    22441 acaaatctct actagtagta gttttaaacc attcagtttt tcgtcttttc ttgttgccca
    22501 taaactcccg gtaacttttc caatttgcat gccgctcttc cttcctaact ttctttaatg
    22561 ctaattcgtt tttcctgtaa gtaatctttt gcaagtggtg ttaagaaact tcctttaggc
    22621 aaaatgaatt cgcttttgtt cttagtaagt ttttcaacat cctgttcggt gatgacttta
    22681 ctttctttgg tctcttttac cggactttcg ataaattcga caccaaatcg gctcagtttc
    22741 tcctcatatt cttgaaaaag ttgtctgata ccatatttag cggaacgttt ataagcatgc
    22801 gctttgatac cactcttcat tatccaagtt ggccgccctg ctaaaagatg atctgtaata
    22861 aattgttctt ttttattcat cggagcaaac aaactgattc gagctaattc agcgatatcc
    22921 aattcttcca gtagtaaaat gtcacaagcg cgttccgaac gatcataaag cgaaacttga
    22981 tattctttta gataacactg tctgagagtg tgttctgaat cttgtcccat gataatcatt
    23041 tttttctctg gaagttgtaa tcgtctcatg acttcctcag tgacagcttt tatgagtgcg
    23101 tctagttcca tactcattta gcctttgttt tcttgattat ttgacctcga attccctttt
    23161 taaaaccaca tgcgttggct tcgtcataat caatgtgcat atatgtagca aaatcagggc
    23221 taatccgaac aacaacatca tcaaaaatta gtggtctgtc accgttaatt ttcacttgaa
    23281 caatttcact ttgggatact tgttgttttt ctgcatcagc aggcgtcata tgaatatggc
    23341 gttttgcaac aataagtcct tctgataatt gaacactgtt ttttgcggat aatagtaaaa
    23401 ttcctggtgt ccctgctatg tctccacttt cacgaaccgg tgctttaatt ccaagcgccg
    23461 taccatctgt ggagcttatt tctacttgtg tttttttacg gattgggcct aaaattacaa
    23521 cgttatgaat aacgcttttt ggtccaacga tgctaattct ttctttacaa acatattgac
    23581 ctggttgaga taggtcacgg aaatgagtaa gttcataccc aggtccaaat agtgcatcga
    23641 ctgtttcacg atctaaatga acgtggcggc cggatgcttc tacttctacg ccagtttcaa
    23701 gtaacgcacg gcgagtgact tcttcaataa ggcttgttat taactcatta ttcatgaata
    23761 agcctcctta ctttttatat tcacctgttc tcacgcggaa catcagtatc cagaataaac
    23821 tagacaatcg gttaagcgct tgaatgatgt ctggtcgttt aatggaataa tcggcttcct
    23881 taaatgctaa aaaggcagct aattccgttt cgcggaccat cgttcttatt ttgtttaatc
    23941 gaatgaccgc attccccatc gtgtaatcag gcataaaatg tgtcatttga tagtattttt
    24001 tcggattatg actacgttcc cgcagttctt tttcatccat tccaagcaaa tgaactgatt
    24061 cgatttgctc gtttaaaact tccgatcgta caatatttct tacaaaggtg aggatttctt
    24121 gtaaatcttc cgcaagatct ttaaactcag ctgcaacgga acattgggtt tccagaattt
    24181 cagcttccag tgtatctaat tttccgcgga aagcgatttg tggatggtct ttaaacacaa
    24241 gcaggttacc acgcaaatgc gtcatatgtt caggcttctc atctaaggct ccaccataaa
    24301 tcgtttggaa ttttgctcta gtagtttctt ttttcactgg ctccactact acttttgttt
    24361 ctgcaatttc atcaatataa tgaaggtcaa ttttcttttc agacaagaaa ctcttagctg
    24421 aaggtgtgat aattgtgcct ttttttatat caagtttttt ggttgttttt aaatcggtgt
    24481 gtaaataggc ttttcgtaac tcatcttctg tcaaaatagc caaagaacca catccttttg
    24541 tcccatttac aattggtgtt agtaatgttg ggaagctttg tattgcttaa atctggtaaa
    24601 aagcgaaagt ttcgggcaat ttccgagtct gatggaaccc ttttgcctta cgctcacgct
    24661 ttttcctgat ttatgttaaa agttagtctt attcagcgct ttttggtaga attgcgtcta
    24721 cttcgctgtg tggacgtggg attacgtgta cagatagtaa ttcaccaacg cgttctgctg
    24781 ctgctgcgcc tgcatctgtt gctgctttaa ctgcgccaac atcgccgcga accataactg
    24841 ttactagacc gccaccaact tgttctttac ccataagtgt tacgttagct gctttcacca
    24901 ttgcgtctgc tgcttctact gctcctacta aacctttagt ttcgatcata cctaatgcgt
    24961 ttgcgtttgc cattttaaaa ttcctccaat tagtgtttta ttttttattt taattctgct
    25021 aaaacttttt cgactaaact ttggatgagt gcgtctgcat caaccggaag ttcagatgtt
    25081 gcttggtttt cttctttacg aatatcttct aactctaaaa cgccagtagc gatgcgacga
    25141 atgttgaaaa gattttcagg tccgatatta tcagatgatg aacttcctcc aactgcccca
    25201 caaccaagtg ttaaagcagg tacaagattt gttgttgcgc caattccgcc aagtgctcct
    25261 ggtgtattaa ctaagagacg ggaaactggt tttttcagtg cgaattcgcg aatgatttct
    25321 ttatcttcag agtggatgat taaagtatgt ccagctcctt catgataaag aatatccatg
    25381 ctaagttcac aagcttcttg ccaagtttcg gctgtataga acgccaagat tggagctaat
    25441 ttttctcttg aataagggat tttagcgcca acttttgttt cttcagcgat aagtactctt
    25501 gcgtcagctg gaacagttag accagcaagg ttagcgatat gttgcacgct tttacctacg
    25561 attgctggat tcatcgaacc atttggacgt aagatgaatt taccaagttg aacagcttct
    25621 gcatcggata agaagtgtgc tccttgtttt ctaaattcag caatgacagc ttctttattc
    25681 acacgttcca caacgacaga ttgctcagat gcgcaaattg ttccgttatc gaatgttttg
    25741 gaatcaagaa tatgtttcac tgcgcgagga atgttagcac tgcgttcgat aaatgctggg
    25801 ccattacctg gaccaactcc aattgctgga gtaccagatg aataagccgc ttttaccatt
    25861 gcagatccac ctgttgcaag gataactgct gtatctttgt gtttcatcag ttgatctgtt
    25921 ccttggatgg ttggaacagt catacagctg atagcgcctt ttggacaacc agctttttct
    25981 gctgcttcac taatgattct tactgtttca agaattgctt ttaatgcgtt tggatgtgga
    26041 gaaaatacga tactatttcc ggctttaatg gaaataagtg ttttgtaaat aacagtggat
    26101 gtagggtttg tagaaggaat taatcctgct actacgccaa gtggaactgc aacctccatt
    26161 actttctttt cgttatcttc ttttaacata ccaatggttt tcatatcttt gatgtaattg
    26221 taaacatgtt tcgacgcaaa gacgtttttg attactttgt cttgccaaat tccgaaacca
    26281 gtttcttcat gggccatttt cgcaagtttt tcgcgagcac cataaccggc atcagctatt
    26341 gcttttacaa ttgtatcaat ttgttgttgg ctcattgcag caagttcttt ttgtgctttg
    26401 ttagctgatt caatgaggtt acgaacttct tggattgagc gtaaatcttt atcttctagt
    26461 gccactagtt ttcactcctt ccataaatgt cttttagtgc gtgaacaagt ttatccttgt
    26521 tcgcatattt aatcttgctt tttgggatag gcacattatt taatgtgtaa gcaagtttcc
    26581 ttagatcaat aactttcatt gcgcgaagtt ttttctctgc acttttcgtg tttgtgttca
    26641 cttctacgac ttgttgaata acttcttttg gttcttcttg ttcgacttct tttggttgtg
    26701 ttttaacttc ttcttgagga acaaaaagtg cttttgtatc ttcgctcatt cttgcgataa
    26761 catggcttga tactaaacaa cctaagtctt ctgttgcagc tttccctgct tcgatagctg
    26821 catttactgc acctacatca ccagttaatt caaccgtagt taaaccacca cgaatgactt
    26881 cacattgaat cagttcgaca tttgctgctt ttaaacaagt atcggcagca acaacagcac
    26941 caagaaaacc tgtgacttca attaaaccaa gcgcttcatt tggcattttt tagcaccacc
    27001 ttaatattga agtggatttt cagccacatt ttctactgcc attttgaacg catcacaagc
    27061 tgctttacat gcagattggc taccagtcaa aagtgctccg ccgaagtttg tttcggatgg
    27121 tgggccatag aaagctccga ttgttacgtc tgctgctttt agtgctgcat ctaacgcata
    27181 catagcttca agtggagggg cgattaagta agcaatcgct tcaccttctg caacattcgc
    27241 ttcttttgaa aggaatgtac cagttcttga aacacagtgc gcgaagtaag gaacactatc
    27301 atcttcattt gcactaacaa agctagcgcc attttcgatg aaatctactg ctacagaaag
    27361 accacttttt acttccgcag ggcttggtcc ggcgataata ccgataactt caccagcgaa
    27421 ttttgtggat gcatttccag caccagcata catacttttc gcataaacaa catctacttc
    27481 tgctgctttt gttgcttcgt caagcgctgt ataagttaca tcatcacaat cagatgtaat
    27541 aataccaagg cttctttgat gcggttttaa gtctaattgt ttaaatagac cattatctac
    27601 gttagataca actttgacac ttaaaacgga tgcaggtaat ttatcatttt tcatgaagtt
    27661 tcctcctcta actagcttat tttaaatcaa taccagaaca ttttttctca agcatattgt
    27721 gaattaattc agcaatgtat gctcctgctt caactggtgg agttccgccg ctatggatgt
    27781 tagaaataac agtacgacga gcttctggca taccaattgt tggtttgtaa gcaatatagg
    27841 cactcatgga ttcagcagtg actaggcctg gacgttcacc tacaagtaag caaactacgt
    27901 cagcgccagt gatttcaccg atttggtcca tagaaggtac acgacaatgt ttaacgaaaa
    27961 taatgttatc aaaatctaag ttatacattt tcaaaccttg tttaatggat ggcaagatat
    28021 ctttgatgtt agcttcaatt gccgctgagc taagtccatc accaacaacg atttgaagtt
    28081 tggcgttttt tgtcgtattc gcacgaatca cttctaccat ttcgttgtca aattcacgac
    28141 ctaagtctgg gcgagttaag tattcatctt tatcttgaca tttagtgttc actgggatga
    28201 agttcatttc ttttactaaa tcctcagaaa cgtaagagaa aacggaatct tgtgctacgg
    28261 catggtccgc acggaaacga agaattgttt ctgttttgta acgtggacca gcacgccata
    28321 aaccaagtcg agccggtgtc atttgtttca ttttcaaata accttcacga tcagctggtt
    28381 ctggtactag taattgtttt ttgatatcta cttcagtaat atccgggatg ctaccttctg
    28441 ttataactgt ttcaactaca gatttagttg gcgcagctgc tactgtatcg gttgttttac
    28501 caccggacat ttctgttaaa atgccttcaa tcatttgttt taattcttgt tcgttcatcg
    28561 cttagttcct cccttcctta ttttaggaaa atagatgcat ctccagcacg gctagttaat
    28621 ttaccatttt cgctgaatcc cattttttcc atccactgat caaattcttt aattggtttt
    28681 aagccaaata attcacgtaa agtggctgtt tcgtggtaac cagttgtttg gtagttaagc
    28741 ataacgtcat caccatgagg aatacccatg ataaagttac atcctgctgc agttagaagt
    28801 acggacaagt tttctacgtc gttttggtcg gctttcatat ggttggtgta acaaacatca
    28861 caacccatag agataccagt taatttaccc atgaagtgat cttcaaggcc agcgcgaatt
    28921 acttgtttag aatcatataa gtactcaggt ccgataaatc caactactgt atttactagg
    28981 aatggatcaa atttcttcgc gaatccataa caacgagctt ccattgttac ttggtctacg
    29041 ccgaaatgag cgtcagaaga aagttcagaa ccttgtcctg tttcaaagta cattacgttt
    29101 ggtccagtcg cagcaccact ttgaagggct aattgtctag cttcttcaat cgttgctccg
    29161 tcaaaaccga aagctgtatt acctttttca gaacctgcga tagattggaa tacaagacca
    29221 gttggagcgc cgcgacgcat tgcttccatt tgagtcttca cgtgtgcaag tacacaagtt
    29281 tgtgttggca catcccattt gcttcggaat tcttcaaatt tattaagtaa acgaacaacg
    29341 ctatcagtag aatcatctac tgggttaagt ccgattaccg catcgccaat cccgtaagtt
    29401 aatccttcca ttaaggaagc aaggatacca tcaggatcat cggttggatg gtttggttgt
    29461 agtctagcgg agaaagttcc aggaagaccg attgttgtat tcgcatgtgc gattacacgg
    29521 atttttttcg cgccataaat taaatctaga ttggacatta attttgtaac agcagcaata
    29581 atttctgatg ttaggccgcg tgcaacacgt ttaatgtcag catctgttgt tttatggtct
    29641 aaaatccatt cccgtaattc ttccactgtc cagtttttga tggaatcatg gatacggtca
    29701 tttacttggt cttgaataat acgcgttacc tcatctgttt catatgggac aaccggatta
    29761 ttacgtaaat ctccaagcgt cattttagaa agcaccactt ttgcagctac acgttcttct
    29821 gcagattcag cagcaactcc ggctaaacgg tcgcctgatt tttcttcgtt tgcttttgcc
    29881 aacacatcag tgatggattt gaactggtat gtatggccga ataaattcgt ttttaaaatc
    29941 attcgataaa tcctcctctc aaaattaaag ctatttatgt ggatcagtta aagactaagg
    30001 ttttaactac tactggtagc actttcccgt cagcaactgg ttttcctata tcaatataat
    30061 caccattatc gactttgaca ctatccaagc aaattagtgg atgcccggct ggtaaatgcc
    30121 cgaagatgct ttgtccgagg gcttttgcca tgtcgtgcca tgtaatgata attaagggat
    30181 gaccaagtgc gattggttct ttcattcctt cgcaaatggc tttcgcatat tctgttactt
    30241 gctggaaact tgggctattt tcgccttcaa ttgcaagtgc aatatgttcc atttcattct
    30301 ctattttgaa ccagctaagt ttttccttga tgacttctgc catattttca tcttcttctt
    30361 gtttggcaag tttcaaaatt ggaatgtttt ttactgggaa aattttctcg gtgtaagtaa
    30421 tcgtactacc gctaatttca gctgtgtgtg aaccggctcc gaccactgtt gcccgtatgg
    30481 tttcgacaga ttcgatatac tttttttcag tcattaaact agattctgca atcgcttttc
    30541 ctagcaataa cccaatatct ccatatctaa aaggatcact tagcgcaccc gttgagatgc
    30601 agtctgcaac gcctccggaa aaagagatac attcaatctc cgttaagaat ttcaatcctt
    30661 tattcgtaat gattgtttca taaaaatcat ttggcgcccc gaggccaaca ctattcttaa
    30721 gcagctcaac catttcacct aaaacgggtt gcaagttttc tggtgaagtt gtttcaccaa
    30781 gtttaaccgg ataacctcgt ttttctatta aagcttgaat ttttggagca atataggtga
    30841 tttttcttgt ttcacggtct actttaatta accgaccacc aatatctaag caagcagtat
    30901 caatgagttc tccgcgatca aacagcgata agttcgtggt tccgccgcca atatccaaat
    30961 tcacaacaga ggtattattc tctttggcat aggtatgagc acctgctcct tttccagcaa
    31021 tgatgctttc taagtcaggt cctgctgttg ctacaacaaa atccccagca aaaccactca
    31081 ttgcatctaa tacattgctg gcgttatctt tacgagctgt ttcacccgtg ataataactg
    31141 ctcccatgcc aatttcttct tttttaattc ctgcattggc atattctttc gttacaaaat
    31201 cacgaatcgc ctccacatca atcaaattat cagcaagaat cggtgtgaac agaatctcac
    31261 ttctaaaaat aatccgctta tctgaaatga caatacgcgg cacggtgaaa cttgatgcca
    31321 tattttgaat ttctaactcg gataaaatga gttgtgttgt cgacgtacca aggtcaatcc
    31381 ctacacttaa aattgtttcc gtcaaaaccc tcactccttt ctagcaaaaa gaaaaagctt
    31441 aaagacaaat aacagtatcg ttacttggct ttaagcttca tcgctttttc atagctactt
    31501 ctttgtagca tggatagaat tgtatttaaa atcaaacatt gttttcgttc cgtgttcatt
    31561 cgattcaatg gttactttgc ctcgaagttt atctttaatg taacttttga caatggaaag
    31621 tcctaggctt ttttcggaca ctttacgaac gttgaaccca tgaccgttgt ccgttacttc
    31681 tgcgtgaata atatttttct cttcttttat ttgtagtaaa atttcgcctg attcatttgg
    31741 atgaaatgcg tgatcatagg agttttgtaa gagttcgttc atgacaagcg ccagtgccac
    31801 ggttcggtca ctgtccaaat aaatgcgttt atcaatatcc attcttacag ctacttttgg
    31861 acaatctgta caacatcttt caatattgta ggcgactgtt tcgatgacca tataaaggtt
    31921 aatgccgtct tccatttgct tcgataaaag ctcgtgtgtc gctgcaatgg caaggattcg
    31981 gctgacactt tcatttagaa tcttctgtgc ctccacactt gtagaacgtc tgccttgaat
    32041 tcgcaataag gaaacaacag attgcaaatt gtttttgaca cggtgatgaa tttcacgaat
    32101 agcaacggat ttagaaacaa tttctgcttc tttcacttta atatccgtga tgtcatgcaa
    32161 gatgagaata aagcggcatt cctgctcgtc ttcttctttt acaaaaatct gcttcataat
    32221 aaagtaattc ccggcgataa ccacttcttt ttttaactga atcggttgtt ttccagtttc
    32281 aatttgatac atgattgcgt caaacatcat ctggtcgagg gataaattat cataatgcat
    32341 gccttggatg tcttccatat aaccaagtct ttcgtaatac tgatccgcag cgcaattctt
    32401 ttgctgcaaa atcccgtttc ggtcaaaaat caaaatggca tcatctagtt gatcagtaat
    32461 tgaatccgtt agtttactca tggcagacag cgtggtagaa acatctcgat aagccgtttc
    32521 ttcattgtca atttcaaaat gagctttaat ttcggcgcta atatcatttt ctagaattag
    32581 cacggcaata actcgctgtt tattacgaat cggataaact ttttggcgaa ttaatacgtt
    32641 ttcttgtgtt tttgcaagta gatcgttaga gttcatacct gtttccaatg ttctaagtac
    32701 acctggctca ttagacctta gggctgtttc tccgactact ttgtttttgt aaagtgattt
    32761 ggttgttttt ggtggtgtat gatgaataac aagtgcttca ctagttagct tattgtatac
    32821 atcaataaat acatctacat cttgatacat ggctgaaaca cttaacgact tggctgtgtg
    32881 aattaattct tcaatatcgt gctccgataa atctgtgtag cgtaagcaca tttctcgaat
    32941 cgttttagtc atcgctcatc acaatcgttt ctgcgatttc catcatcgga cagcgtttgt
    33001 ccatgctcag gttacgaatc atattgtaag cttcttcttc tgtgatgttg ttctcaatca
    33061 taagcacacc ttttgctttt tcaatcactt ttcgttcttc taattttttg gtgagctttt
    33121 ctaattgctg ctctaatttt cttgtttctc gccctttggc aatactcatt tcaacagttg
    33181 gaatcaaact tttttcatca agtggcttta ctaaataacc taatgctcca aaccctttag
    33241 ctttctcggt gtttttcgga tcactaaaag cggtaagtaa gataattccg ccagcaaggc
    33301 cttctgaaat aattcgtttc cctgctttta agccgtctaa gagtggcatt tgaatgtcca
    33361 tgataacaag atctggctga tggcttttgc aaagttcgat tgcttcaaaa ccatctgtcg
    33421 cttcccctac aacattgtag ttcgcttctt ctaagatgtc tcggatgtcc attcttgtaa
    33481 taggttcatc atcggctatt acaattcttc cattcattcc tgtcacgtcc tcttcttctg
    33541 ctattgattg attcgtcaca ataaaggaca aaatcattct atagaagcat ttacttgagc
    33601 gaaagagtaa aagagctaga gaaaaaattc tccaagaaaa tagaaagagc cccttaaaaa
    33661 tattgtgcaa tatttttgag ggagccccgt tgctctgcta tatttataat tccacacgtc
    33721 tttgtgctcg gttctattat aaagtagcat gaaaacgatg tcaataggtt atttgattcc
    33781 agttgtgaaa taaataactt ttatgccaac attttttcaa gaatcgcact aacatctgtt
    33841 tctgtcggta ttctaggatt ggttgcagta catccgtcat ttagcgcgcc ttccgcgatt
    33901 tgagcaatat tttcatttaa atctgtgcgg ctaataccac attctgttaa tgtagttggc
    33961 atattgagtt tcttttgaag ttgtttaatg gcattaatta agctacgaac accaagacgt
    34021 gtattcgatg ctggcatttt tagtaatttt gcaatcgctg tataacgttc cgctgctcgg
    34081 ttatccggat tgttaccaaa atcacttgta attccagcat tataactaat tacgtgcggt
    34141 aaaagtaatg tattcatacg accatgtgga attttaaatt tcgcaccggc tgtatgcgca
    34201 ataccgtgat ttaagccaag agaagtaatg ttaaatgcca ttcctgcaag acaagaggca
    34261 ttatgcattt tttcgcgagc ttctaaatca tttccgtctt tataagcacg ctctaagtat
    34321 gtgaatacta attggataac tttttccgcc attgcatccg agtaatcatt cgcttttgta
    34381 gatacatagg cttcaagcgc atgcgttaac acatccatac cagtatctgc tgtaattgct
    34441 ggtggaacag attttactaa gtctgcatct aaaattgctt catctggcaa aatagcatct
    34501 gtaattagtg ggtatttaat ggctttttct ttgttagtaa taacagagaa actagttact
    34561 tcggagccag ttccactagt tgttggaatg acaatgaaag gcattgcgcg caccgtacca
    34621 agtttttggc cgaagaattt catcgctttc gccgcatcaa tcgctgatcc gccaccaatt
    34681 gcaatcatca agttagcatc acattcattc aaaacttcaa ttcctgctac cacgttttca
    34741 atcggtgggt ctggaatgat ttcgctaaaa atcgtatatg tattcgatgg atcaattttt
    34801 tctgtaatcg cattaatcat tccggaacta accataaatg gatctgttac gataaagatt
    34861 tgtttgtctt taaaatcgag taaacgatct gttgctcctt ggccaatata aagatctgtt
    34921 ttaaaactaa ctttttgcat gagattacct cctagttttt ttaaaataaa aaaagaagct
    34981 ttgagtagag aaatttcctc ttccaactca aagcttcttt gctaagtaaa cagtacgcct
    35041 ttgtaccgta aaatatttta tttgtccact ttattaaaaa ccaaacccgt ggaaatgtca
    35101 aatctttttt tgtaaatagg caatgaagat acattccttg tatcactctt ttcgtcgttg
    35161 aaaagatcat tgcccaccat aaaacgaagc ggtgcacatc tttgtgcgta tggtgcttga
    35221 taaaacgtag ctcgttcagc ttctcggcac caaaccattt acagtgggct tatttgtttt
    35281 aaaaacaaat aaaaaagccc cagtgagaca actacactgg aaccaagaat tatacatgct
    35341 ttgcctcgaa gcagtataac cagttaaaac aattagataa aagacctgac ttagagtgtc
    35401 taactcctta cagtggcggg accgtgctgg actttcacca gacttccagt atctaactgt
    35461 ttgtatgaac gaattcgttt atcaaagtta ttatagcata aaatagaccg cttgcaagaa
    35521 gaatttgctt tacgagataa tttgaacccc accactgaca aactcacgga aataatatcg
    35581 actgtaaaaa gtcgtgacat agcgccgttc tagctcaaat aaaatttcga gtggatccgt
    35641 tttttcgagt tcataaagta taccgacaac ggtaccacta tgcgaaacat ttaaccccac
    35701 taaatccaag ttttccgtca cttccacaat ctctcgccaa aatggttttg gcaaaatagt
    35761 ttggttgcag gctgcactaa ctgatgcggc tttaccaagt aagtgaatgg atttttgcgt
    35821 gacggcttgt tgaaaatagt ccattccttt tgctagatgt ccttcgtttt tgagtaattg
    35881 cgcttggtga ttttcttgcc gataagtagc tgtttctaaa atggtaagcg gttctaacac
    35941 aacgacgcct agctttggca tccaattgga gctttgaatg atgtcccctc ttaagtgatc
    36001 gaacaaagtt agtgattcaa aaatagtgct atccgttggt tctagttgta aacatagctt
    36061 ggcaatttca gcttctgaga tagatttatt cagccatttt gctgtagcgc caattgttgc
    36121 ggcaatatca gcggtggaac ttgccatgcc tttcgcgacc ggaatagttg acttcacttg
    36181 taaagatact tgcgggaggt ctcttttagc cacaccaaaa tactcgcaag tggtttggaa
    36241 tgcgagccat gcttttgtat gcccggagtt atttagtcct actttatcag ataaagtgac
    36301 ttcggaatac cagttgattg ggtatgaaat tagcttctct ccgcctaaaa tccagccttg
    36361 caaaagttcg ccacaagatg ccggacacct cgctttaatt accactaaaa atcacctcaa
    36421 gtgcggttaa gagttggcga ttatcttctc tacttttcac tgccactcgg taataattct
    36481 ccgtgagacc tcggtaatta gcgcaacttc ggataaaaat cccttttaaa agcaattttt
    36541 ttcgtaaatc aaacggtttt tcgaggtgga aaaatatgta atttacactt ggtcggtaca
    36601 cggtaagcgc tgaaaattta cttaagcctc ggtataaaaa gtctcgttcc gcattaatcc
    36661 aatcgaatgt ttgtctaata taggcttcat cctctaatag catttgccct gctaagtcag
    36721 caaatgtatt aatcgaccag ggttcgcgca tttgcatgag tgcttcggct aataagtcat
    36781 tttttgtcag caaataaccg agtcttaagc ctggaatcgc gaaaaacttc gtaaaggcgc
    36841 gaataattgc taaatgcgga aatttttcta aatagttgat catcgaaatt gtttcatttt
    36901 cttctaaaaa gtccataaaa gcctcatcga taattaaata tatgtttcgc ttttcacata
    36961 aatcagcaat ttttatcatt tcttgttgcg cgatgagttg tcctgttgga ttattggggt
    37021 tgcacaaaca aacagcttcg atatccgtat cttgttcaag catttctagt acgatttgcg
    37081 ccgcagcaaa attggtttct ttcgttaact cagcataaac aatttcggca tcaaaaaaag
    37141 cacgttcgta ttccgcaaaa gtaggcgcaa gtaagagtac tttttgcgcc tttgttactt
    37201 ttgctattcc gaaaatcagc tctgtcgccc cgtttccagg gattacattc gctaggtcga
    37261 gttgatgaaa cgaggcaatt cgcgcacgga gcgccaagta atctggttct ggatattcta
    37321 ccagtttgtc caaatttgtt gttatcgttt gtttcaaact agctgggact cctaatggat
    37381 taatattcgc actgaaatcg agcaccattt ctttcgttaa tccgtgttgt tttgctagtt
    37441 cattatagtt gccaccgtga gaagccgtcg ttattttcac atcaaatcgc tccttaactt
    37501 atcgtttgtt ttgcatactt ttctacatcg cgagcaatca ttagttcttc attggttgga
    37561 ataatgcaca ctttgaccgc ttcatcatca ttgctaatta tcatatcacc cgcattattt
    37621 tttgtcacat ggcatgttac accaagataa cttagctgtt ctgttaccat ttggcggatt
    37681 aatggcgaat tttcacccac acccgctgta aataataatg cgtcgcaacc gttcattgcg
    37741 gaggcataag caccgatgta gttgcatatt tggccagtaa acatacgaag tgttaatagc
    37801 gcgcgtgaat taccttcttt ggctgcaatt tcgatatctc tgaaatcact tgaaattccc
    37861 gatacgccaa ggacacctga ttcactagac atcatatgca tcacttcatc caagctatag
    37921 cctaattcat ccactaaata cgggatgatt gtcgcgtcaa ttgtaccaga acgtgttccc
    37981 atcatcaagc cagcatttgg tgtaaagccc atggaagtat tcactgattt cccagcttca
    38041 atcgcacaaa cactcgctcc attgcctaaa tgacaagaaa taatttttaa tttttctaaa
    38101 ggtttttcga gaacttctgc tgcttttcca gccacatatt tatgactcgt tccatgaaaa
    38161 ccgtattttc gaatatgatg tttttcataa agttcataag gaagcgcata taaaaagttt
    38221 tcttctggaa tcgtttgatg gaatgcggta tcaaatactg caacagaaac cgcatttggc
    38281 agcaattcac gaaaagtttt gattccgatg atattcgctg gattatgtag cggcgcaagg
    38341 tttgtcacag cttcaatccc tttcaccact tcatctgtta caacacagga cgtaacaaaa
    38401 tcttctccgc catgcgcaac acgatgtccg acccctgtaa tttcgctcag atcattgatt
    38461 acttgatgcg ccttcagctg ctccagtaaa atctcgactg cttccccgtg gttattgatt
    38521 gctcgtattt ctttgatttt ttcattttga aaggacatgt tgaaaatggc gtctggtaga
    38581 ccgattcttt caattaagcc cttaactaaa acttcttctc ctggcatcgt aaaaatttgg
    38641 aatttcagtg aagaactccc tgcgtttatc gccataattt tgtgcatata gctcagtcct
    38701 ttctcatttt taaaggagta aacaaagcca ttcttgttta ctccatgctt ttttataata
    38761 aaatgttaaa tagtccaatg gctaagagac caccaatgat tggtccgaca attggaatcc
    38821 aagcgtaacg ccagtctgac ccacttttat ttggtactgg tagtaaaaag taagcaagtc
    38881 ttggtcctaa atcacgagct gggttaatcg cataacctgt cgttggtcca aaactcattc
    38941 cgatggcaac tactagaaag ccaaggatta atggatttaa accatctgta aaactgttcg
    39001 ctccaatcat aagtaaacca aaaatgaaag caaatgttgc gataatttca ctgattaaat
    39061 tgaaaggtgt atttctaatc gctggtcctg tggaaaaaat accatgtgta tcaatttctg
    39121 ggggagtcgc tttaaaatgc ggatagtagt gtaaaataac gatggatgct ccgacaaatg
    39181 ctccggcgat ttgcgcgata atatatggca ccacatctgc ccaagggaat gatcctccaa
    39241 ctgcaagcgc aatagttaca gctggattta aatgcgcccc gctatatgct cctgcgacat
    39301 aaatccctat cattaccgca aaaccccaac caaatgtaac aactacccag tttgctcctt
    39361 gagataatga tttatttaaa gtcaatcctg ctaaaaggcc gttcccaaac ataattaaaa
    39421 ccatcgtacc aataaattcc gccaaatatg ctgacatagt ttatcctcct ttttaatgta
    39481 aattctaaat tatttgttct aaaatttctt ttagttcttg atgtgagggt gtcgtaggac
    39541 tagttggtaa gcaagcgtct ttcagtgcat tcgttgcaat ttcgtccatt tttgcataga
    39601 ctttttcttt tgctacaccg gcgtctgtca atgtgcgcgg catttgcata tgttccatca
    39661 tcgctacaat tctttcgcga agtaagcgga cagctgtttc gttcgagtct gatctggaag
    39721 caatgccaca aatgcgtgcc atttctgcat atttttgttc tgtttcacga tttttaaatg
    39781 cgttaaaacg aatcactgca tctagtaaga tcgcattggc tagcccgtgt ggtacgtgaa
    39841 actgtgcacc aagttgatgc gcaatactgt gattcaagcc taaattggcg cagttaaaag
    39901 ccattccagc catagtagaa gcattatgca ttttttctcg attcgctaaa ttacgaccat
    39961 catcataaca gctcgttaag aaacgtaacg ttaattgcac acttttttca ccaagagcat
    40021 cggtataatc gcttgcatct ttagagacat aagcttcaat tgcgtgtgtt aagacgtcca
    40081 tccctgtgtt cgctgtaata gctggaggta ccgtaacaac cagttgcgca tccaaaatag
    40141 ccatatccgg aattagttca tctaagaaaa gcggatattt aattttcgtt gttggatcag
    40201 tgataacggt tgcggctgta acttctgaac ccgtaccgct ggtggttgga attgcaataa
    40261 aagtactgat attgattttt tccaaacgtt tggcgaaata gtagattcct ttagccgtat
    40321 caatcgctga accaccacca aaagcaatca tgacttgcgg ttggattttg cctgcctcac
    40381 taacccctcc agctactttg gaaataggtg gatcaggtac gacatcggta aaaatatgca
    40441 cattattgga tgtatctaat tgtccaatta aaccttgaag cccttcccca tcagccaaaa
    40501 aacggtcaca gataatccag acatttttat ttttaatttc ttttaaaact tgtaaactat
    40561 tcgtaccaaa agctactttt gttttaattt gaaagctgtt cattcagttt gcctcctctt
    40621 aacgaatcga aaaaccatct gttaaaacac aacggcgacg tctagcaaaa tgacgcgctg
    40681 tagtggttcc ttctccggta ggcgttgcaa tagtgaaagt agtgctacct tctcctctaa
    40741 agcctaatcc cgcaaatgaa ggaccatttt tgacaaagat ggatgtttgc atatctcgtg
    40801 cagctttatt taatctagaa atattttgtg aatgcatcgt agctgtgtga tgcaagcctt
    40861 gctctaactc aatagcgaca tcaagcgctt cgtcaaaatt aggaactctt acaacaggaa
    40921 caatcggcat caataattct acagttgcaa aaggatgtgt tttttctgtt tccacaataa
    40981 ttaaacgtgg tgaaaaatca caaacaatcc ccgcttcttt taaaatttct gaagcacttt
    41041 ttccgactag ttttttgttt gttacgcctt tatctgtgac agctactttt tctagttttt
    41101 gaatatcgct tggattggtc acatgtagtg caccattttt ttccatttgg aacattaaga
    41161 aatctgcgat gctatcaact gcaacaatac ttttctccgc aatacataga atattatggt
    41221 caaaagatgc gccgtctacg atatcagcag ctgctttttc gatgtttgct gtctcatcta
    41281 caatagatgg cggattcccg gcacctgcgc caataacttt tttaccggat tgcatggctt
    41341 gaagaactac accagggcca cctgtaataa caaggagcgg tactttcgga tgattcatca
    41401 tttcttgcgc ggcttgaata gatggttttt cgactgtaac aactaaatta tcaatgccgc
    41461 aactttcacg gacaatcgta ttcaactttt caatcaacca aagagaaata tttttcgcac
    41521 ctggatgcgg gctataaaat actgcattcc cagctgcgag catgccgatt gtattgcaaa
    41581 tcaaggtttc cgttgggttc gtgcttggtg caacagctcc gattacgcca tatggagaaa
    41641 gttcgtaaag cgtcatgcca ttatcaccag tagcaacttc tgtatacaaa tcttccacac
    41701 ctggcgtttt ttcaatcgct aacgtgtttt tcaaaatttt atctgctaca tttcccatac
    41761 ctgtttcagc aactgctcgc gctgcaatgg attcaatttc tggataaagt gcttcgcgaa
    41821 ttgctttcac aacgttgcgg cgttcttcta atgatttttc tttatagtta ttttgtgcta
    41881 taactgctgc ttgaacggcc tcgtcaactg tatcaaaaac cccacttttc gcgcctttga
    41941 ccgttgtttt tactggtgca tctttttgtt ctgctaattt ttctaaaaga acttttttta
    42001 ccagttgttc gagttctaat gattccatac agaattaccc cttctctatc attgataatg
    42061 cttttttcgc aatgtggata tcctcttcca ctgatccgcc gctaatcccc attccaccaa
    42121 taatagctcc atcttttccg tagattggaa caccaccgcc aaaggttaca atatcaccat
    42181 ttgtcagtgt ttctaattga taaagtgggg ctcctggctg aactgcttct gttaattttt
    42241 ctgtactagt tttcattgct acagcggaat atgctttttt cgttgccagt tctgcactta
    42301 ctaaaagagc gtgctccatt cgataattaa atctggcatt gccgtgcgca tcgacaatag
    42361 caagtgttac tggaacgcca atttcttccg atacaataca aacttggtgc attaattttt
    42421 cacaaaagga aaaagataaa tcgcttgtaa ctgacttttc ttggccagtt tgctctaagt
    42481 atttggcaac aatgagcttg gtcgctttat cgagcatttg tctaaaatcc tcttctctag
    42541 caaggatgta caagaaatcc gataagcgat ttacgaattt taataactct tttcggatag
    42601 ctgtttgttc tgacaaacga actaataatc gctcaccacg cctagcaaca gtccttgcgc
    42661 tatgaagaaa tgctcctgct gtgcttgatc caggaagaac aaaactatcg acttttggca
    42721 actttgcagt ataatcatca atgacttttt caagttgatt gatgtcgttt tctgtaataa
    42781 taattttgct agcgagggat gcttcgtgct ctgttgcaag ttctgcgcaa acgtaaaaca
    42841 actgccgctc cacgtttcta agcaaagtct tattctcagc tgaagtcacg aatttttctg
    42901 ctacactaat ttctgcattt agctcatcaa acgagccata cgtttcgaca cggtcatcat
    42961 attttttcac acgattccca tcaaataatg cagtcgttcc cttatcgccg gttttggtat
    43021 aaatactcac gagttattca ctccttactt atcaaaacta tcgacaattg caataattgc
    43081 cgaatcaatc gcactatttg gttccgcaaa aacacttcta gctgcattgc cacgagcaac
    43141 aagcacatac tccccaattc ctgccccaac agagtcacac gctacttctt ctgagcgcac
    43201 atgctctcca tttgcatcaa ccggttgtac aatcatcaat tttttaccag taagtgagtc
    43261 ttcttttttt gtggaaacta cacttcctgt tatttttgcc ataaacataa cgtcactgcc
    43321 tttcccgcac tgcaatatta tttttcgtta aatattcatt tgcaagcggt gtaataagct
    43381 gctttttata tttgcaaagt gtacttccgc ttgggattac cgcgctatca ccgtaacaaa
    43441 tcacttgacc atttgaatga aagagtctct cacctttatt tgtaaaaact gggaactcta
    43501 gctgactaag cattgtataa tcaagccaag gttcaccatt atcatatagt tcaagctcaa
    43561 tggttactcc ataatctgta gctttttcga accaagcagt taatgattct gctcggtttc
    43621 cactgagaat tcgctcaaga aaatgtttgt ttacttgtgt taatcgaatc gttccacttt
    43681 ctataaaaat cgcaactgga tcgcgtggaa gtttgctgat agcgatagaa gttttatttg
    43741 tcgcacgaag cttcaagcgc tggacaatga ttttcactaa tttttctatc atagattctc
    43801 gctccctgaa ctcatagcaa taccaagtgg cgtgacatac tgtggataat tcggttgaaa
    43861 aacaggcgtc ttcaaatagc tttcaaacgt atctttgaac tggctatatg cggaagcacc
    43921 gccaacaatg taaagtggct ctgagggaga tttctcgaga tgaacacggg taatttctgc
    43981 cattttttcc actactggac gcatcacaga aaaatgctca ctagaatctt tttgctcgcg
    44041 tttattctgc tcggcttttt ctactggaac accgtaatat cccgcaagaa caagcgtcat
    44101 atgcgttccc ccagttggtt catctgcggt ataaattact tcaccatttt caaaaacgct
    44161 gattccagtt gtcccgccac caacatctac aactgcgcca tcttgtaatc ctagaactgc
    44221 tgccgctgcg gtcggttcat caatggtgta cagtgcttcc attccggcgc tctcaataac
    44281 attggcgacc acctttttat tgtttcctac tgtacctggc gggatggctc cagaagcatg
    44341 tgttaaagtt atacctaaac atttttctgc gcgttctttc agtcgtgtca caacctctac
    44401 agactcgcgg taattgacaa cgagaccatc gcgaacagca tctgcgaatt caaacgctcc
    44461 aaaaagtggc acatcatgtt catctagaac aacaaacacg atggaggaag tacctaaatc
    44521 gacgccaact ttcactttct gatcagcaga aactttttgt ttaatatctt tattcattag
    44581 cgctgcaagc tgttccattc gttcatttgc tgtttgtaga atatccattt cagcacctcc
    44641 ttatctcgtc acgacttgat tatttttgca aagcacgtac cagcaatatc tgctgcattt
    44701 gcttcatccg tatcaatatg catttctggt ataaattgat tgtttactcg aatcgtacaa
    44761 tgatttaaaa caagacttcg catttctgaa cctactagaa cggatacttc atcgccttgt
    44821 ttcacaccat attcatgcgc cacactttct ggtaaatgga tgtggcgttt cgcgacaatc
    44881 gctccttttg gtaagcagat ttcgctatgt ttcgaaacga gtttgatccc aggtgtcccg
    44941 tcaatatctc cggaaacgcg gattggaatc ttcataccaa gcattcttgc atccgtttta
    45001 gaaagctcta cttgcgaaaa cttccgaagt ggtcctaaaa tgcggacacg atgcagttcc
    45061 cctttttctg aaacaacagt aagtgtttgt tcagcggcga attcacctgg ttgtttgagc
    45121 cattttttca cttgaatagg ttcgtttgga aaaagttggt tatagtcatt ttctgttaga
    45181 tggatgtggc ggttagagac tccaatagga atctctgttt ccacaccact aagtttatct
    45241 gttactattt gcttgattat tgcttttaat tcttctcttt ccacggctta tagacctttt
    45301 ggtagcaacg tttctacatc attgtgtgga cgtgggataa cgtggataga ttgtacttcg
    45361 ccaacgttac gagctgctgc tgcgcctgca tcggttgctg cttttactgc accaacatca
    45421 ccgcgaacca taacagttac aagacctgaa ccgatttttt cataccctac tagtgataca
    45481 tttgctgctt ttaccattgc gtcagctgct tcaattgcgc caacaagacc tttagtttca
    45541 atcattccaa gtgcattatt cattattatt tcctcctcaa attgggttta cttctcttct
    45601 tcaaaatgga tacaatcttg tcttggatcc ccttttactc gtgggcaaag cgggtcatga
    45661 catagattgc aagtcgcttc tgccgggact tcggtttctt ccactttttc tgtttcaacc
    45721 attacttccg gctgttctgg ctctatttct tcttttggcc aaaatactgt aaaaatctct
    45781 tcccctggtc gaggaatgac ttttttcgca ataaaactgt ctgaggctat tgcggtttgt
    45841 tcgcctgctt caagcgccgc attcacagca gcaacatcac cttccacttt cacggtaatc
    45901 cagccaaaac cttttgcttt ttccgtgtct acaagttgga tattggctac ttttgccatt
    45961 gtatctgcta cggttatcgc tgaagcaagt cctttaattt caatcattcc aattgcttga
    46021 tgcattcctt cacctcctta tttaaaaggt acacccttga caagtcgcgc cgcattcatt
    46081 cccatatttc gctggttttc tagtgtggtt gcgcaaaaac gatacgctga aaatagtggt
    46141 ttatctgggg gtaaattacg ataatgaatt actaaatgat catttttcag cgtaacccct
    46201 actagaagcg gagaactcgc agatgctcga aatgctgctt gcacttcgtc tttcaaagac
    46261 ataatttcta attcacatgg aatgccttct tcttctattc caaataaaac ttgtttaata
    46321 ctgtctggat tcgcgtctac atctgcatga aaataaattg ctggcttact aacaactgga
    46381 atcatgcctt agcacctcca gctagaatta agcctgttgc aactgcattt ctagggcctt
    46441 ctttaccacg aatattccca cggccagcaa cgagtgaata atgagaaagt gcatcggtaa
    46501 ttaattgtgg aatctcaaaa tcaagggctg atcctccaac aattacgaca aatggaatat
    46561 ctcgaatatt cccagttggg ctgacatatt ttaaagcgcg gatggtattc gttacaaaga
    46621 cacgctcctt agctgaacgg cgaattaact tgattttttc aattgataca tccccaggta
    46681 ttggcacaaa gccatcttgt tttacaatca ccactttggc aaaaactgtt ggagaaagcg
    46741 gcgtatcaaa aaattgcact gtgccatctt catgccgaat gtggaaaata ctttcaactt
    46801 tagcaagcgg atatttttta atatcttcgg ctaaataacg gtcttcaagg ccaatttctg
    46861 actggataat catcgttacc atatcgccag cgccggctaa atgagttgcg ataatttctc
    46921 cttttccgtt gataatcgag gcatctgtgg atccagcacc taaatctaaa atggcaagtg
    46981 gagtattagt tcccggtgta gtaagcgctc cgagaatggc agcctctgct tctgcaccac
    47041 caattttgac gcttacttgc agttcttgtt cgatttctga ggcgatggct gccatttgta
    47101 agtgatcact ttttaccatg gaggcaatac caaccgcttg ttccatggaa aactcacctg
    47161 caagcccacc ttgaacgtct actggaacaa atgtatccac agctagcaaa tcttgaataa
    47221 aaatatcagc tggtaattta tctgttagcc cagccatcgt ttggcgcact ttttctagca
    47281 tgccaccgat atttgttcct ggttctccgc tagcattgtc gagttttgga agtgacataa
    47341 tggcttgcat gattttctca gaaccttctg cgacattgac acgctgcgtt ctggatcctg
    47401 attgaagttc gatatgcccc gctggtattg ttcgagcttt gacatcacct tctggcgttt
    47461 taatcaccac cgccgaacga ttgccaatta aagctcgtgc cacaggaatg atatttttcg
    47521 tttcatctga attcaaatga aatactgtcg caataccata tgggttagaa atggtttcaa
    47581 tgacttttcc gggagctgca acttcgacag ctgctaacat atcgaccggc actttatcaa
    47641 taaaaccaac ttcatcgaca atcggaatct tatggtttag tcggttatgc acgagaaccc
    47701 cgtcatctgc ttgaagaatt gcagctgtga tttgatagcc attttcgacg taagtattaa
    47761 tttgctttgc tgcatcttca aaatcgactg ttttcgggat aatcacaatg tagtcctcat
    47821 cttttgattt agatgtaacg tcatccaaca gcaccgtcac acctgaaccc ataccaagtc
    47881 cccctggtgt tttaggattg tgaccaatca tcgtagactc agtaatgatt gtttctgtaa
    47941 tagtttccat tgccacatcg ccaatcactg gagtcgcttc attgatacgg atttcggcta
    48001 agttctcggt cgtcgcattt actttctcta aagcaagtcg caacgcttta aaaatcccgt
    48061 gaagattttg ttttgttcct ttgataccgg ttgtgtccgt aatagcacta gcaacaaacg
    48121 ctgcttcctt cgaagagttt gccattgcaa gtgccacttc cgttgtagaa ttcccgatat
    48181 caatccctgc aatatacttc attcatttca ccgcatttcc tacataatcg cgagcaaaag
    48241 gagaatttta attatcgcct tttaatttct tacgctcttg ataaagctgt gctgcttcac
    48301 gaacataatt agaacagata gttgcatgat aaacactctc taattcatcc gcaattgcaa
    48361 gtaattcttc tcttgaggaa cgatacggac gcattgcatt ataaatttct aaaatgcgtt
    48421 catctggaac gatcgttagc tctgctgcac gttcgaaatt attcgcgagt gttgcacgtc
    48481 cggcatctct tgctacttgt gcttgcattt taagcgtttc cgctgttaca cgaacatctt
    48541 ccggtttgat tgtgccatct agaacacttt tcaacgtaat gtcgtctaat gattttgatg
    48601 tcgatgtttt tacaagttct ggacgttttg ttccgagtgg ataatctcgt actgtcagtg
    48661 tatctccgct cactttttgg gaagttgttg tggagactgc gccactattt acttcttgta
    48721 aaatatttct aaccatattt tctagtgctt cttgattcat cattttcacc tcactattag
    48781 tttacttgta attcgactgc gtttttccct tgaacaacat gttttgtttc tttgatatga
    48841 agtaaagctg ctttggcttg gaatttcgga cgagccattt gatcattgac cattggcact
    48901 ggatttggtg attcaccttt ggcatatttc gccgcgtttt taccaattgc tcggtatgtt
    48961 tctagcgtaa ttaatggcgc ttgcgggaat agctctaagt tagaaagtgg ttgtaaatct
    49021 ttttggtgga ttaatgctgt accgcgcgac tgaatgccga tacaaatgcc agaaccactt
    49081 aatttgtcgc cttctactgc aacgaaagct acgtcagaag aacggaatac acgaaccaca
    49141 cgtgctttta acccttcttc ttcaatacct gcaatcactt ctcgtaaaat ttgtttatgt
    49201 ggaacaccga caatattttt tgtttgatat ttaccaaaag ctggcgcgac cgcaataaca
    49261 acttcatctt tttgtctacc cggctccgcg tccccaactt ctgttaaaaa gctttcatcc
    49321 gaaactgcaa cacttggctg ttctttttgg aaagaaactt tatcttcttt tagctgtaat
    49381 tcatctagta cttccgagat aattccgcgg agtacttttt cgttaatttc aaccatgtct
    49441 cttaatcctc ctttataaaa aatgggaagt agcttattct aattcgtttg catcaactgc
    49501 aacagcgata tcttttaatt tttcccagcg ttcgccctct aagcgataac cagttccagg
    49561 acctgcataa tcatttaagt cattgacgga actaatgaca ttccagtctt tatcaatgat
    49621 ggcagatgta tgaaggaagt ccccagatac acgttgtttc aacatattta gtacactttc
    49681 agcaacatca tcgaatccgc cagcagataa cgctttaaca acatccagac cagtaacacc
    49741 acggtccatc atttcagcag ctgctttaat atcttctacc atgttacgtt ctggcatatc
    49801 tttacttcca cgtgcatacg ttgctgcttc tacttccgca tcggttactt ctggaagacc
    49861 taatttatca aagacagctt gaattacacg tgccgcttta tttctaactg caacgacttc
    49921 ttcttcggta actggcgtta aaccaccgtc tacttttaaa tcacgttgca aaatattgta
    49981 atcatcaaag tcatctgcat caaaattgga accagcaaac atattgtcat agttaggtgt
    50041 tgcactgtaa ccagaggaaa tataatctgt tcctggtaaa aattgcatca ataaacgagc
    50101 tgtacgacga atatccgagt gcgagaatgt ttggtcgtta ccagaagcta cttctagatc
    50161 taacattacg gcaattaaat tctctgcaag aaccgctcta ataccacttg gtacggctcc
    50221 cggaattccg atacaactaa tcgaaccatt ttgtaaccct tgaacaccag ccgctttcgt
    50281 aatgaaaata cagcgagatt caagataaag catcgattta ccttctgcgt aacccatttg
    50341 aacttcagaa ccagttccgg atgtgaagcg cattttcaaa ccgcgagacg cgtaagcact
    50401 tgccaaaata cctttggacc aaggtgtatc gtctccgtct gtaaatacag gttctgtacc
    50461 ataaacagaa atcgtttctg cataacaagt taaaccacgc ataccgagtt ctaattctgt
    50521 tgcttcttcg agagaacatt gcgttaatac gccaccacgg ccagtttgcg aacctactaa
    50581 taagctaagc gcgttaaaag gtgcataacg aactaccgca acggttgttt cttgctcgtc
    50641 aaaaccacga attgctgctt ctgccgcatc tgcagcaatt tgaacaggat tatcacgcaa
    50701 gtttgttacg tgggcctgag ttgttggtgt tctgcgagag cgcatttttt gcatcgacat
    50761 catcatttcg acaacgttca tttgtgaaac tacttctact atttttgccg gtgtcatagc
    50821 tgttgtaagt aaaacgattt tttcccgtgg cacatttggg tcgcaaagca tatttgcgag
    50881 cttcacagaa tccatttgca taacttcttc cgcacgagat aaatcgacgc catatttagc
    50941 gatgaaatgg tcaattaagt caaagtcagc gagttttttg ctgtccattt cgactacttt
    51001 tccattttct attttaatgc ttggtttcgg atcattcggg ctttccattg cgattaggcc
    51061 ttcttcaatc cattctttta caaaaccatc ttgattgacc gggcgttttg ctaattcttc
    51121 aaagcgtttt gatttcatca gtcgttaccc tccgttctaa atgtaggatg gacgatcatt
    51181 tttcggttca tcccctaaag ctccaagtaa ttttttacca atttcacgtg ctgaaataac
    51241 agcttgacgg actgcaccag aatctccaga aatacaaaga atcacttcat tggagaaact
    51301 tgttccatct gctggcgagg agtatgcaac gacatctacg ttagcggatt tcactgcagt
    51361 atctgccata acaacgccaa tcccagccgg tgcaccaacc ataagaccga atgcttttcc
    51421 tacaggtgcg ccgaatgctg tattaagtgc atgacttgct cgcgctgtat attgaagttc
    51481 gatgtgtcca gcttcgttgc cgtaaacatc tccgaaagtt ttatctaatt cattcagtgc
    51541 aacttctact gcacgtttga catcagaaac atcatcacca ccaaagataa ttaaagaacc
    51601 gtgacccgca ccgccttttg tatcacgtgg taattcgatt tttactactt ctgtatttgt
    51661 tgcttttaca gcttcatctg ctgccataat atgtgggcct gcaccagtac gggctcctaa
    51721 aatacctata gaacggtaag acttttcaag cttcattgct tctaaaagtt gtccgtctac
    51781 attcgcaatc actaggccga ttgtatctcc tattgctctt cctacaaatt ctgttaattg
    51841 aactgctttt tcactcattt gacgtgatcc tccatcctct actagttttt ccggggcatc
    51901 attaaccgtt tccattacct gttttagaat ttcgtcaatt agtttatttt gctcactcat
    51961 ctgacttcac cctcactggt aaaatttctt ccacatcagt atgcggacga ggaataacat
    52021 gtgtactcat cacggtacct acatttcttg ctgctgccgc tcctgcttct gtcgctgctt
    52081 tcaccgcacc aacatcacca cgaaccatga cagtaaccag tccagacccg attttttcgt
    52141 accctgttaa tgttacatta gctgatttaa ccatggcgtc agcggcttca atggcgccga
    52201 ctagcccttt agtttcaact aagcctagtg cttcttgcat gggtgtacct ccttctcaaa
    52261 ataagtattt tactctctca gtataggcaa tccggaatat aaatagttgc cgcttccaaa
    52321 tagaaaaaaa gaagacgcca atcgtgtttt aacacaattt tgcgcctcca aaaaaaataa
    52381 cgacaaaaag ccatccaata atgcatggtt tgggctttct cttatgaaat tactcttagc
    52441 aatatattgt tatcttcatg gcaagaaaat gtaagcgcat tataaatatg ctatactaag
    52501 aacgacagaa acacgccaag tctcgccgaa aggggaatag ctatgttact acagtccaaa
    52561 agcaacgaaa tgctcattga aaaagtaatg gatgagttct cagccgcaac cagtttagcc
    52621 tccgttgttg tagatataca cggtaccgaa gtttctagat tatgtaactt tactcctttt
    52681 tgccaactta ttcgctccaa tcccaaatat cgctcccttt gccaaaaatg tgatatgttt
    52741 ggtggactgg aagcctccaa aaccggaaag cctttaattt atcgatgtca cgccgggtta
    52801 acagatttct cagttcccat cgtcgtcgaa aaccaactta gcggattttt acttagtggc
    52861 caggttattt gtgaagaaag tagcgaagtt ggtaatattc aagcagaaga aaccgattgg
    52921 aaaaatgata aagagctcat ctccgcattt cgctctgtcc ctgttttcag ctccaagaaa
    52981 attaattctt ctgccgaaat gctcacgatt atctcccagt attacttgaa atccgaaatg
    53041 gaaaaaagcc gggaagagca aaagcaaaaa attgtttttc atcatgcaaa aatagcgcat
    53101 catgaagaaa ataaagaaat tcggaaagca cttaagtata tcgagaaaaa tctcaaccga
    53161 ccgattacac ttgatgaagt ggcaagtcat gtgtacctta gctcttatta ttttagtaag
    53221 ttattcaaaa aagaaatgaa tgtgaatttc atcaattatg tgaaccaaaa gaaaatgtca
    53281 cttgccaaag aaatgttgaa aaatccacgt ttgtccattg ataatatcgc acggaaccta
    53341 ggcttcacac aaacaagcta tttctgtaaa gtcttccgga aagagtttga agttacgcca
    53401 aaaggctacc gcgaaacatt aaaataagtt ttatctaaaa gtcatgttct cttcccttta
    53461 ggaatatgac ttttttgttg cctgaaaaac aaaaaaactt tcatccgtca tcgaatgaga
    53521 gtttatgcac agcaaataag ctatacgacc cgcatacgct ttttaggacc ccgaaaaaga
    53581 gttgcttccg gcttatttgg cgagtatcct gacttggctt catccaacaa tcgaaccttc
    53641 ccatacgcta aaaacgtaca gtggctatct cgattcttgt ccaccttaca gttgcggggg
    53701 cagtttcggc atcgcaccga attcctcttt cagaaatgta catacattcc accaacataa
    53761 gacctattta actacctaca tcttaccaca aagtatttat aaaaaaagcg ttttcatctg
    53821 aaacaacaaa aatctactat tgattagaaa taagaaaatg ttgagatttg ttgtcccaga
    53881 gcgaataaca tccttgctta aaatcgatat cccaatattg tgctatagtt tgtttttgta
    53941 aaaaaagcgc aatgactcgt aaaacaccga gatgacccac gagcaacacc gtatcaagtt
    54001 gctgccattt ttccatttct tcttctaata tcgcaactac tcgctcataa aatatcggaa
    54061 aactttcccc atttgaaaat agtgccgttt gccagttatt acagtattca ttccacgcct
    54121 ttggaaactt agtgctaatt tcctgatatg tataaccttc aaagtcaccg aaattcattt
    54181 cattcaaagc cggaaaccga agcgtctttg cgttacttaa aatatttgcc gactgcttca
    54241 cgcgcataag atcactcgta acaactaaat cgatcgagta attctccagc ttttcgcgga
    54301 gttgctccat ttgtcgaata ccattttcat ttaacgcgac atctaactga ccacaatatt
    54361 ttttcgctac attccagtcc gtttctccgt gtcgcacaaa aataagttgc acttaaatca
    54421 acccccaaag cagcactaaa caaaataaac aaataagttg tcccatttgt ccacccgcac
    54481 caagcgtatc cccattcata ccaccaatcc gtttataaac aaatgcccgg taaataatcg
    54541 taaacagaat cacgccagca taagcaatga cgccaatata agagaaaaac gcccctaaag
    54601 caactaacac aatcacctgc gcaatcacaa ccggccacca aggaactcct agaaaaatcg
    54661 aacctagtcc ttctttcgat cccgcatagg tcatttttgc aaaaagcaac attgtcactc
    54721 ctttagcaac aatcggtaaa acgaaaaata accaaccaat ttgttgcgta tctggaacag
    54781 ataggaataa agagccataa aaaagaaaat aaaagcaaat cgcaatcacg ccattcgcgc
    54841 ctacacgact atctttcata atttccagca tacgctctct tttccgagaa gaaaaaagtc
    54901 catccgccgt atccgccagt gcatcaacat gaaaaccgcc agtaatgata atttctgcaa
    54961 aaagccccgc aataatcgca actggtaagg gcatcaaaag agccaccaaa gtaaaaatga
    55021 gccaattcca agcgccaata atcaccccga caaacggcag caaagcactc ccttttttca
    55081 agttgatttc atccatattt atttggacag gtaacggaat tcgcgtaaag aattgaatta
    55141 ataaaatcaa tgttttcata ttacttccac cttttcggaa tgccactcac gacaaaatag
    55201 acttcttcta cttccgttgc aatttgctga ttaatacgac caataatgtc tcgaaagacg
    55261 cgtgttaact tgttttcagg tacaacccct aatccgattt cgttcgtaac aaaaataaat
    55321 ttggctgagg attgctctcc tgcttttaaa attgcgcgaa cttccgattg aattcccgct
    55381 tctacttcat cagcaatctc atttgtcaac tcgcgctcac caagcaacga aaaaaacaaa
    55441 ttagttacta acatcgttac gcaatcaagc attattacat catatttatt tccatttcgc
    55501 tccaaataag cagcaatccc tttaaatgct tcaaaagtat cccagtgttc tggacgtgtt
    55561 gcttgatgtt tttttatcct agcttgaaac tctgtatcat tttgaaatgc aattccggtc
    55621 gccacatata aaacacgatt atatttggta gcttcttttt cagcaaaact acttttacca
    55681 cttctagcgc caccagttac aagcatcatc tcactcatgg taattcctca actctcctaa
    55741 acatttagcc gctggaaagt tctgctcaaa tgcttttact tcacttgctt taactgctac
    55801 taaaataaca gaagcaggcc ccgcagtttt attcatggtc gcttcattaa aaacgtcact
    55861 ggctttgaaa gtacaatcat taagccgtgc taaagtattt gcctcataag ccattccttt
    55921 cgacccaacc ggcacaactt caagcacatc gctatgctcc accaattttt tcactaaatg
    55981 ataatctggc atctccgcca tcctctgcaa aacttctgct ccaacaatcg gttcgccaaa
    56041 tgcaaataag accgcagctt cgtgcacatt tataagctta agtgcagctt tagtcgcaaa
    56101 accagttaca agaacgccta cactagtttg tgttacgttc atattttctt cagtacttcc
    56161 atttaattca atatgaccta aatcagcctt aataagttcg tcttttagcc ctgcgataac
    56221 acgtttaccg gtcggctcca tttccgctcc gataacatca ctcacagcca ctactacagc
    56281 acctgaagca agcatttcta gtagagcgac tctcaaggtc aaacgagctg tgacttccgg
    56341 cgcgactctt aaaccatcat gcactttctc accaaaccca gcgctaatat cacagctcgt
    56401 caaaacacag ccaccaggca catcaattac agataaatcc ctcacttgag gcataaaata
    56461 acccccactt agttaaaatt aatcttccaa atatgcccga agctcttcta ttccagtttc
    56521 ctctaacgaa gaaatataaa aaatatgctt cgcgccagcc atgcgtaatt cccgctctgc
    56581 tcgctcgatg tctttttctg attccgctaa atccactttt gtaacaatcc caataaccgg
    56641 tttagcaaaa atactggcaa acatcggtga aaacgtctgc ttcttctccg ttacactctg
    56701 taaaattgcg attacagatg catcagccgc agtcacagtg agcgcgctgt agagttgtct
    56761 atgctgtaca aattcacctg gcgtatcaat catttcttga aaatactcca c
//
LOCUS       DASEAA010000004        42450 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.004, whole genome shotgun sequence.
ACCESSION   DASEAA010000004 DASEAA010000000
VERSION     DASEAA010000004.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 42450)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 42450)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..42450
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.004"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            130..444
                     /locus_tag="U0342_000182"
     CDS             130..444
                     /locus_tag="U0342_000182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEM2421564.1"
                     /translation="MEYFLSLLKIIVLLAVLAGISYFLVKKNKQANRTRKSENDLIKL
                     KDTLLISHQLRAVLLEADGEKVLAIISNNDIRTVSLKGKTDQNEALFRELLLKEETKE
                     NA"
     gene            437..1204
                     /locus_tag="U0342_000183"
     CDS             437..1204
                     /locus_tag="U0342_000183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein flip"
                     /protein_id="HEM2421565.1"
                     /translation="MRKIASRRVFQVSFIVIFAISLVVFWPGVNVHAESWLDSLGVNG
                     TDGVNSSVALFVLVTVLSLSASIVLMFTHFTYCIIVLGLTRQGLGATNLPPNQVLVGL
                     ALFLSLFMMQPLITAWYDDVYKPSQKEEWSASKVWDETKPLLTKYVAENTYKHDINMM
                     LKAEGEDPVTKKEDAPLMALMPAFILTQITQGFLTGMFIYLAFIFIDLIVSTLLMYLG
                     MMMVPPMTISLPFKILVFIFIGGYGLITNMIFQTIHF"
     gene            1217..1489
                     /locus_tag="U0342_000184"
     CDS             1217..1489
                     /locus_tag="U0342_000184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthetic protein FliQ"
                     /protein_id="HEM2421566.1"
                     /translation="MNLTPITQIFQDFFYSGLALILPVSLICIVVVIVVAILMAMMQI
                     QDQSLTFLPKIVAFVVALFILGPWMFEHMTDLFVGIFSKLPLMIRV"
     gene            1492..2253
                     /gene="fliR"
                     /locus_tag="U0342_000185"
     CDS             1492..2253
                     /gene="fliR"
                     /locus_tag="U0342_000185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FliR"
                     /protein_id="HEM2421567.1"
                     /translation="MEFEFFLAVVIVFSRVASFLFFFPLLKGRNIPNSVKVVFGMAIS
                     IPVATGVDVSGITTLPDLLLRVTSEVVFGLALAKLVEIIAVIPKMAGFMIDYDLGFSQ
                     VNLIDPSYGTQNSITAAILDTFFVVIFLSLQGMDYLIYYLMKSFEFTASVSILFEKGF
                     IDLLLGTLGFALASAVSIALPIMGSIFIVNIILAFISKSAPQINIFMNAFIIKITFGI
                     FILACAVPILSTVFKNLTDEMIQQYVSFFDYLLKK"
     gene            2269..3315
                     /gene="flhB"
                     /locus_tag="U0342_000186"
     CDS             2269..3315
                     /gene="flhB"
                     /locus_tag="U0342_000186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar type III secretion system protein
                     FlhB"
                     /protein_id="HEM2421568.1"
                     /translation="MAKDNKTEKATPRRIKKARNEGNVAKSKELNNAFSLLIVAGLLY
                     FFGEMFIKNTIQAFVALLKQPPKLANMESYSLFYLMEFGKVLMPIMVMVVIFGLMNYG
                     VQVGILFSAKAVKPQFKRLNPANYFKRVFSVKGIVEVVKALLLITLLSYVAYIGFRDH
                     LDTLISYTGQNWLYSLGQIFALFKNEFLALFLVIAVIGLLDFFYQRYDYKKGLRMSKQ
                     EIKDEMKDSEGRPEVKQRQRSIARGLLQGSITKKMADATFVVNNPTHISVVMRYDKTK
                     DHAPKLLVKGEDELALFIRQVADTDGVPMITNRQLARSIYYTTNPDEYIQEDLYKDVI
                     EVMKELMDADKIKF"
     gene            3362..5437
                     /locus_tag="U0342_000187"
     CDS             3362..5437
                     /locus_tag="U0342_000187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhA"
                     /protein_id="HEM2421569.1"
                     /translation="MGNLGAIKKYFAILIAVSFVIALIVPLPPFVLDLVLVTILAFSV
                     LVYMRATSIKDWNELKSFPSLLLLMGIFRVSINISTTRAILTTGDPGQVIKQFGNFVI
                     GSNFVVGIVIFIILIVFQFIVANGSSRTAEVAARFTLDALPGKQMAIDADLNQRLITE
                     PEAKEKRAYLNMETEFYGAMDGAGKFVKGDVLFTVLLAVVNIVFGLIVGMVQGGLSFG
                     EAAVKYTELTIGDGIVSQIGSLLMAMSAGVIVTRVFDGSDDNVAVGIFKELMQNSVVV
                     YTLAAMFILMGVFSPLPTIPFVGIGVVLGIIGYRTQFNLKKKEQLELEKEMELIQSET
                     SSAEAEHNQAFGAAREKFPVVVELGLNIAALVKQKMNGETAKDKVVLMRKSILQDLGI
                     GVPGINFKDNTSFQPRGKYEIKVKGVAVASGVLKAGHLLALKTPGVMMDLDAEPTKDP
                     IFGEDGYWILPGELEDAQMKNYQVLEPLSILITHLDVVLRKNLHELLMRQQIKDLIDG
                     LADENQILIDEIKKKEIDYSLIQGVLRQLLKEGISVRDLPTIVEGIIDGQTIYPNDLD
                     GITAFVRERISKVICEQAKNQDGKIYALLLQDSIEMDTEIVNTPYYGYALNWALDKEL
                     PIIQKVRDTVNKAQLTGREPVILTRRKDFRFGFVRVLERYQLDVPVLSISELSPETEV
                     EQIALIEPT"
     gene            5459..6682
                     /gene="flhF"
                     /locus_tag="U0342_000188"
     CDS             5459..6682
                     /gene="flhF"
                     /locus_tag="U0342_000188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar biosynthesis protein FlhF"
                     /protein_id="HEM2421570.1"
                     /translation="MGKHLVEKMEIFKANSKREIHKKIRLVTNEPYKITDERVTKLGI
                     FKKQYEVTAVIMSEVAIADGRMDFQETFQKSVVKNRPKTDDLLKKEKLLEMLAAGAEL
                     AQSTPLLEERKTQEEELSAMRLELAALNRELAVKMREEREQNSDFVKFLKGRGISDTY
                     VADFMQAGRKQFKQVETAHLDDITDWFVPYLSGKLAVEDSFDLSNHRIISLIGQTGVG
                     KTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEA
                     VQYMTYVNCVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGMKSADVMT
                     ILPKLAEIPIDGFIITKMDETTRIGDLYTVMQETNLPVLYMTDGQNITENIFRPKSRW
                     LAERFVGTDRRRVLE"
     gene            6679..7458
                     /gene="flgG"
                     /locus_tag="U0342_000189"
     CDS             6679..7458
                     /gene="flgG"
                     /locus_tag="U0342_000189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal-body rod protein FlgG"
                     /protein_id="HEM2421571.1"
                     /translation="MKGLYIGAAGMMNYMQHIQVHSNNVANAQTPGFKFDQLTSEVIS
                     RNKVNYQNGPVARQVGTIDYGVRPAATHINLTAGSSYITNRDRDFFMQDTDPTQGSNF
                     FITAKNGEISLSRGGQFHSDQFGFLRTADGANLLSATGEAIQVGQKTSIRAEANGDLY
                     NAETGQYLGRLGTKFVSANQADSLVKDGEGRLHVNGINTMNLPAGQGIIQNGVIETSN
                     VDLGVEMVQLMDNQRMVQASKNVVNMFDKVYDKEATGLIRQ"
     gene            7487..8275
                     /locus_tag="U0342_000190"
     CDS             7487..8275
                     /locus_tag="U0342_000190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein-glutamate O-methyltransferase CheR"
                     /protein_id="HEM2421572.1"
                     /translation="MIPDLEKDYLYFTRVVKRDLGLDLALYKETQMKRRILSFIVKKQ
                     YITFGEFFKHLKKDAVLLDEFISLITINVSSFFRNRNRWDALEKQVLPRLLEDSRGKL
                     RVWSAACSSGEEPYSLAMMMERSVGTRHYDILATDLEPAILKRAVIGEYQSRQMEELT
                     EQERHTAFVEKGDTYQILPKYRKSIRFRRHDLLTDYYEKGFDLIVCRNVLIYFTAEGK
                     HQAYQKFAESLRRGGVLFIGGSEQILNPADYGLATLNNFFYIKT"
     gene            8300..8635
                     /locus_tag="U0342_000191"
     CDS             8300..8635
                     /locus_tag="U0342_000191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3964 family protein"
                     /protein_id="HEM2421573.1"
                     /translation="MGRIENIKNLAFFEDKPGLAEQILMLEKKTQLFLPNEFEIRQTV
                     GYEIGDKEVILGRLESFYFLALKGVGEDNYRSQAFASEADAKAFFVHLPEMENELVAF
                     WLNEVELVR"
     gene            8662..9513
                     /gene="motA"
                     /locus_tag="U0342_000192"
     CDS             8662..9513
                     /gene="motA"
                     /locus_tag="U0342_000192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor stator protein MotA"
                     /protein_id="HEM2421574.1"
                     /translation="MEITTIIGLVLAVIVIAGSFMIQNISLAMLFSAEALIVIILGTI
                     TAVMMAHPWSDVKVVPKLFKILFTKEKMPDKVEVLVQYKEYADEIRRSGVLALEDSVD
                     EIEDPFMKRGMRLVVDGQSSPEFLRDVLEEEVASMEERHAAYAKIFASAGAYAPTLGV
                     LGAAMGLIHAMGEMSNPDKLSEAIAAAFVCTIFGIFTGYVLWTPFANKLKVKSQKEVH
                     LRYMMIEGVVALQERNAPRVVEERLLSFLSPKEKDVLRNGKGKKTREVEEIERGQASQ
                     ETAGGTR"
     gene            9473..10300
                     /gene="motB"
                     /locus_tag="U0342_000193"
     CDS             9473..10300
                     /gene="motB"
                     /locus_tag="U0342_000193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor protein MotB"
                     /protein_id="HEM2421575.1"
                     /translation="MAKRRKKPQEEHVDETWLIPYSDLLTLLLALFIVLFASSSVDAK
                     KFEQMGNAFKKIVEEGAAGNQAYVSKEKGPDDPNVNAVLKAMEEQDKKKEATEQEKAK
                     KAAAALLKKQNEEKIEAFKKQIDSYIAAEHLGAKMTTKYSDEGLLITIRDDILFQSGS
                     AELTAGKREIAKEIGELFAQGKGTMEGIVSGHTDNVPISTSIYSSNWELSVARAVNFM
                     EAIIQENSEVNPGEFSARGYGEFRPVAKNDIAANREKNRRVEIMVRPINRDTLDEDE"
     gene            10310..10810
                     /locus_tag="U0342_000194"
     CDS             10310..10810
                     /locus_tag="U0342_000194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421576.1"
                     /translation="MQLFLSGSHTLTDYDKQEIQAYLEKFAPVNHIHLLCYKSIENEV
                     LQFFLKKEHLAPRLSIYTFAPKECLPEPFLSTIDYLECLGSSYQSFGYFDTVIAKPTY
                     EKFLAQIVSKMDLVCCFYNGDKPTDVIPVDVAKSFDVQSMIYDLPKAKKHLLHRASSD
                     KIKLVN"
     gene            10833..12746
                     /locus_tag="U0342_000195"
     CDS             10833..12746
                     /locus_tag="U0342_000195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM2421577.1"
                     /translation="MRPLISICMIVKNEAHILRQSLASFRKFTEEIIIVDTGSTDETK
                     EIAQEFTDFVYDFEWTGNFSDARNFAAKHATGKWILAIDADECLEEESYRKLEKQLKS
                     PIEPIQMAQIISFTGEKGRVTTTNQMARVYKNDGTICFRGVIHEQLEAVDKHPIAAGV
                     AEVKIYHYGYMTEIVEKQDKSDRNLRLLEKEVKNNKNSGFVHFNIGQEMNRLGNKKEA
                     LKEFSEAFRLRDHNHYIWAKLSAYHIAELLEQEKRYDESLAIIEEARIIWPNVPEFPL
                     KKANILYVNHQLEDAKEIYQSLLENTAIDYQSIVLYEATNFMPHKMLGTIYLEEKDYT
                     RAMTHFSKAYAENSSDYGVMFQMIMLLSKFHQPKEIFAFMERHHFISSTETGLRLLSM
                     TTQQGYAELSELIVQSLTDVYPPIAEATEVKIATIRNVFPVISESAILFGIKEELIDA
                     ADLCLWHYENPQLPIERVMKNSDVGDIYDFIFENGPRISKKRYLFVLERAIALGKGEF
                     ADYLLALRNVYHDSINSHIADLFFQYDFADIALDFYNIVDADEVTKQGYINLINYLVD
                     AEVLDEALAIAERGIDNFSTDFRFYLWTIKIDTENRANRISEAMDEFPNNRYLAKLLD
                     EVTMLQDTVTNNR"
     gene            12759..13667
                     /locus_tag="U0342_000196"
     CDS             12759..13667
                     /locus_tag="U0342_000196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheV"
                     /protein_id="HEM2421578.1"
                     /translation="MTEEKGILLQSGTNELEIVTFTVGENLFCINVLKVKEIIHPLEV
                     TPVPDSNPAIEGVSQVRGEIMPVVNLARVMKLPEIEPENTKFIITELNQMKIVFRVDE
                     VHRIQRISWEQIEEPEKLSIGLEELAVGIVKLDGNLVLLLDYEKIIYEISGNADFAVT
                     GEDRMARKVNREEKTIFIAEDSQMLRQLLEDTLHEAGYTNLQFFANGREAQEHIFKLL
                     KEQKEQTFENVNLLITDIEMPQMDGHHLTKVIKEDEIGRELPVVIFSSLITEDLEHKG
                     AGVGADAQVSKPNIHQLINILDELVL"
     gene            13905..14768
                     /locus_tag="U0342_000197"
     CDS             13905..14768
                     /locus_tag="U0342_000197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FliC/FljB family flagellin"
                     /protein_id="HEM2421579.1"
                     /translation="MKVNTNIISLKTQEYLRKNNEGMTQAQERLASGKRINSSLDDAA
                     GLAVVTRMNVKSTGLDAASKNSSMGIDLLQTADSALSSMSSILQRMRQLAVQSSNGSF
                     SDEDRKQYTAEFGSLIKELDHVADTTNYNNIKLLDQTATGAATQVSIQASDKANDLIN
                     IDLFNAKGLSAGTITLGSGSTVAGYSALSVADADSSQEATEAIDELINNISNGRALLG
                     AGMSRLSYNVSNVNNQSIATKASASSIEDADMAAEMSEMTKYKILTQTSISMLSQANQ
                     TPQMLTQLINS"
     gene            15043..15402
                     /locus_tag="U0342_000198"
     CDS             15043..15402
                     /locus_tag="U0342_000198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator"
                     /protein_id="HEM2421580.1"
                     /translation="MLKLLIVDDAMFMRTMIKNIVKDSDFEVVAEAENGLEAVKKYDE
                     VKPDIVTLDITMPEMDGLEALAQIMAKDPSAKVIMCSAMGQQGMVVDAIKKGAKDFIV
                     KPFQADRVLEALEKAAK"
     gene            15422..17278
                     /locus_tag="U0342_000199"
     CDS             15422..17278
                     /locus_tag="U0342_000199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chemotaxis protein CheA"
                     /protein_id="HEM2421581.1"
                     /translation="MTTNMLDLFIEEASEHLQALNDNLLQLEKDPTNGQLVSEIFRSA
                     HTFKGMSATMGFQQVADLTHAMENVLDEVRNNRLAVTEHLVDIIFTCTSHLETMVSDI
                     QHGGQGAADISKTVADLEALLHPEQETDLAVEKTYRIQIRIEEAAILKAVRAVMCLER
                     LAEMGIISETTPDREAIELEEFEQSFEVVLESAQTKEEIEAVVLDISEIEKVTVTEEV
                     EEVQVIEPIKKAAKQTTKRLENKTIRVQLEKIEKLMNVFEESVIERARIDEIAEKTNN
                     KELMEHLGRFSSISKEIQNGLLNMRMVPVDSVFNRFPKMVRTLAKELGKKIDLVIEGA
                     DTEVDKIVIDEIGDPLVHLIRNSVDHGAETVEVRRKNGKNETATINLKAFHSGNNVVI
                     EIADDGAGINKRKVLEKAIAKNVVTRAESTKMTDAEIFDLLFDSGFSTADQVSDLSGR
                     GVGLDVVRNTILKIGGKISVESSENAGSTFRIEIPLTLSIIQSMLVATSERRYAVPLA
                     NVAEAITINPADIQHVHGKDLINYRETIIEVLDLGECFHETPLNDTDELLLLVVKNAK
                     RTFGLIIKDIIGQREIVLKTLGGFFSESQIAFSGATILGDGRVVLILNLETF"
     gene            17291..17590
                     /locus_tag="U0342_000200"
     CDS             17291..17590
                     /locus_tag="U0342_000200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEM2421582.1"
                     /translation="MEQVFQVELPEWEPKEPSQEGREKGSIRQVDNIGVNLIVRLGKK
                     EMPVGDIAELSIGDVLEVEKKPGHKVEIFLDEKKVGIGEAILMDENFGIVISEID"
     gene            17609..18019
                     /locus_tag="U0342_000201"
     CDS             17609..18019
                     /locus_tag="U0342_000201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421583.1"
                     /translation="MKQEAYNAVKMKVDQEKTAILKELQLLLSKREKVVEKLAHEKEV
                     YYSRTKKERLQVAVLAGSMQLDAFSPSRIQQMEREIHQISQYIKSNEQILEQLEEKGK
                     QAKKMYDDTRKKWQQLENKREEQTLRDLKMVLLK"
     gene            18035..19081
                     /locus_tag="U0342_000202"
     CDS             18035..19081
                     /locus_tag="U0342_000202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-length control protein FliK"
                     /protein_id="HEM2421584.1"
                     /translation="MLIPDNLLQPLVGKKQVEPKESLAEELVELPFISLLMENSPAPL
                     LKGEADNGEQATLPLKEIAQPLVSAKLLDDAPETKLQVAPLELKEVKETLAAIAKQAI
                     DQPKIENAPQAVETPVTNTPKEPTKNASREQQPPPELIIPTKESPKLAENVAKNQPVL
                     AKLPQEKEVVQLFKASIKEPVTAKEEVAVKKPAESSNIWHDTAKQLTPAAKPEVPVTL
                     KQLDKTITDQIEQLQKFQVKQNKAFFAIQPESLGKVEVLLKKMPDKIFVHIEYQEQTA
                     KQKLEQMAQDLHNRFRDRGVEVAVTMTEKQAPKENNQGSDGRHQGESKKEKERENPHQ
                     ERAKQEAFDLEEET"
     gene            19083..19505
                     /gene="flgD"
                     /locus_tag="U0342_000203"
     CDS             19083..19505
                     /gene="flgD"
                     /locus_tag="U0342_000203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464223.1"
                     /note="acts as a scaffold for the assembly of hook
                     proteins onto the flagellar basal body rod; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook assembly protein FlgD"
                     /protein_id="HEM2421585.1"
                     /translation="MDGISSLSGAGQDTNNVVTSSVSKTLGKDDFMKLFLTSLQYQDP
                     SSPLDTNEMMSQMAQLSLMEQVANMTTAVDKLSEQAQNSALQSAVNFIGKDIKGVSLN
                     GEVISGKVESVQQTTNGVMLKLKDNDSLVPMTYVTEIN"
     gene            19525..20760
                     /gene="flgE"
                     /locus_tag="U0342_000204"
     CDS             19525..20760
                     /gene="flgE"
                     /locus_tag="U0342_000204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook protein FlgE"
                     /protein_id="HEM2421586.1"
                     /translation="MNQTMYTAISGMNAFQQALSVTSNNIANANTTGYKKQSVVFNDL
                     LYQNTMGSVAGGLYAGTNPMSFGSGSKIGAILTDYTAGSPTATGRNKDAALQGRGFFI
                     AGDNAGGNIVYTRDGSFAVSDNNYLTTQQGKYVMGYATDKNGNVLNGNLQPIQIPLNS
                     AIPGEATKNGSLSGNIPLDWGEKDTISSELSVYDNAGGKHKLQVNMKAATPDASGNVS
                     YEYEIQMDGKALTPPVTGTLNYNAQGELTNPDALKNIQINSTVNGKQVNMGLNLSGLT
                     NYGTNQVFSPTSDGKGAATVKDYAVTDSGYIAVSYSDGTVIPVAQLAVATFSNEDGLV
                     KMGNGEYVPGLSSGDAVYGVAGQNGAGGISGSSLEGSNVDLSREFVNLMTYQSGFQGN
                     TKVIRVADDVMKQIVNLIQ"
     gene            20774..21010
                     /locus_tag="U0342_000205"
     CDS             20774..21010
                     /locus_tag="U0342_000205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliN"
                     /protein_id="HEM2421587.1"
                     /translation="MKINHTIPLRIDFELGRTKQPVGSLLDVKKGTVFRLEDSTANVV
                     KITISGKCIGYGEILTKDGKMFVKITKLGEGSSS"
     gene            21031..22023
                     /gene="fliM"
                     /locus_tag="U0342_000206"
     CDS             21031..22023
                     /gene="fliM"
                     /locus_tag="U0342_000206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliM"
                     /protein_id="HEM2421588.1"
                     /translation="MSDKLSQEQIDALLSQISEGKVVDESTEIGDFGRFHPYDFHKPE
                     KFGAEHLESLKTIASAFTKKSMEFVSQRIRIPIHTEATLADQVSFASGYIETMPNDSY
                     IFCIIDLGNPELGQIIIELDLAYIIYIHECLSGGNPKRKLSERRLLSVFEELTLKSIL
                     EKFCEALKDSFKSVHPISPEIVNIETNPALLRVTSPNDMMALVSVDIKSEFWISTMRI
                     GVPFFSVEEIMNKLENVVEYTFDKRRNFDAEVEQELHQVEKEACIRVGEIKTTWKELN
                     KLEVGDVLLTETHIRDTLKGYVTEKWKFECYMGKSGNQKAVKFMRHTGRTEQER"
     gene            22026..23573
                     /locus_tag="U0342_000207"
     CDS             22026..23573
                     /locus_tag="U0342_000207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein"
                     /protein_id="HEM2421589.1"
                     /translation="MEQLLEKNITQMELDVIGEIANISFGSASTVLSDLLHQQVTIST
                     PKVEIVDLYNTKDIDIPHVVLEVNFHKGIEMRNLFVLQSEVAAAIADLMMMGDGNIDP
                     NEELSELHLSAVQEAMNQMMGHSATAMSNMFGEMIDITTPDIKVIALKEQLEDTNDQT
                     MIKVGFDLIIGDLITSNLMQLIPIDKGHELAKRLLGDAVPEPEPVKEEISLTAEELDV
                     FLEVCNIGIGSASTVLSKLLNRKVSLQIPTARVIDSKEFEFNERPCLVTSVEFVEGLR
                     SSNTFIISKNAALIMADLMMMGDGLVQEDAELTELEVSAVQELMNQMMGFSATAMSEM
                     LGTKIDISPPTMEFCNFGDTMIQKNIEEGKTVEVIFPLEVEGLLKTPMYQIFNPAAAK
                     EMAQLMLGIQAKEVAEKEATTPAEIIEPEKLAEPVHQAVIEEKETLSEMEQILEDIPV
                     TLEVVFGTAKVKLEKFISWCEKDVIILKESMNEPLVLALNGVTIGKGILVRVDDHFGI
                     QMTELVR"
     gene            23579..24982
                     /locus_tag="U0342_000208"
     CDS             23579..24982
                     /locus_tag="U0342_000208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421590.1"
                     /translation="MRKLGLMTILFWLCFSVQAFAADPEPPIISLEGEQHVFTSGEVI
                     SFHIENAADLKIILVNEHGQRKLLDEETYTVTDWDLDGSYQAEFYQADVPKPFVTVED
                     LFEVKQLEDVAKDETAPSLKTIEITHDEDVLLTSVLRVSADLDDAESGVKQATLVVHS
                     ESNESEIELIRNNYTGKFAAEIPLEKFQLGEKITFQLQLVDFAENEITVDLGNTVQLY
                     QPKAPLLSYDGNDITNVQKKIGQVGKQIELTLDKYTTEFPELETETGKIIPLKWQKTA
                     TEWKGSLTLPSELSGEIIHIQGMDQHLLVRATSEPFGEVQLVNNAILTGTILSDFTLI
                     SNLYIEVNGQKFSVERAGNRFTSAEITTTGKIVLHWTDWDGQIYSKQMNQEIKPVIAI
                     PGKEIIAPPPVIPNEKTQILTSPAPKPSVEAHENTPKKQVKKETSTKDNSSSIPFWIP
                     ALMIIGVIIFSGNRAMK"
     gene            25005..26171
                     /locus_tag="U0342_000209"
     CDS             25005..26171
                     /locus_tag="U0342_000209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421591.1"
                     /translation="MKIDGIQESAENRNQLERELIKQNPVVKEGTIKAQMNTEVAVPK
                     TPPVSFSFKELSSLQLNGTSAASLELYMKLMMNNAKKANDLIFYVMRAGIKNPTDSTK
                     WQTVRSEISSQLSTILMKQHNFEAYFSENPANQKLFLANQKIMNEISFLLKMLPTLTF
                     ETTGKYDFLRMMQIASGNMETGIQMMREFQGHIEHATRLDPIVDARQETNWMIKVLRE
                     FGNMFQSRHLLPYELQAENINIWKLGSEYLKLMNQLLPQIGAFPNGNIKIFHQQATKP
                     LTELFQELQRLADGQMTQGGIAVILDRMQGQLTRLAQLFQKMEIEAGFTDTERILGSV
                     DAEFASDMTKMMLLAQQEMSFFDLLVKDFRSVSKQPIFFMIVAIFIILLLIILF"
     gene            26278..26742
                     /locus_tag="U0342_000210"
     CDS             26278..26742
                     /locus_tag="U0342_000210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaR family protein"
                     /protein_id="HEM2421592.1"
                     /translation="MNNVSIGQISQSKQTNVVRGMQELNQTQQLYFEQMKANGKKQTP
                     SLTEINELITNVTDKKSLVEMDMTVDNVLSYKKAVQTFLNFYVNNVMDYDNIESRHPK
                     YGFSQKMTILKQVEKQTNELDDVMNLIDTKTGHLDMLNRIGEITGMILDVVL"
     gene            26752..27180
                     /locus_tag="U0342_000211"
     CDS             26752..27180
                     /locus_tag="U0342_000211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Myocilin"
                     /protein_id="HEM2421593.1"
                     /translation="MQNELINQLEILIEKNVKATDAAILLGKLVQEENWIDAEERQLG
                     LQRELAALQNEYQALKTIIGEDNTLRTLQNTWTPAENAIIDERKKMLLEKENLLRVSV
                     TENQIRTEMQLAFSEHMVDVITGHHAETQAENNMMINETF"
     gene            27200..28720
                     /gene="flgK"
                     /locus_tag="U0342_000212"
     CDS             27200..28720
                     /gene="flgK"
                     /locus_tag="U0342_000212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein FlgK"
                     /protein_id="HEM2421594.1"
                     /translation="MRLSDFNTSLSGMSAAQIANMVAQQNISNMNTPGYIRQAVDQTA
                     VYGDGGLLGGKQTGYGVKVTDIKRLTNTALTTQYNNQIAKQSASLYQSGALGQALNLF
                     GTPGKNTPSDNLDNFFTAWAALAKNPDQATNTTALLSSMSIFTDQLNQLHSGLKELET
                     TIAADTDAAIQDLNSLIKKLGSINKAIGNAGSNPPNDLLNQRDQLLSTMAGYAGISVS
                     AHPNNPDVYDVTIGGRLVVQGDETTEITSTRTATGFEFSVDGQKLNMPEGSIIASVRV
                     NQNEIKSYQEKIETFSNSLAKALDDIQVKNVNKTMDDLQKINDALKANPNDEKLLSNR
                     DELLRQLEKFPGVTRSGDTLTIGGVDHAIDTLGTSTYVTDVNDFSIPIFTQSSGKWIL
                     NPAITSNADNKPFLGVIAADIASLKTDKNIQGTTFPSFMDGIITEVATDASKSSATST
                     ADTQALNSLSESKSSLEGVNIDEEMTNIMQYQSYYVANTKAMNTVNDMMKALLAML"
     gene            28732..29607
                     /locus_tag="U0342_000213"
     CDS             28732..29607
                     /locus_tag="U0342_000213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein 3"
                     /protein_id="HEM2421595.1"
                     /translation="MRISTNQQANSIINQLNNVSGNLAKYQLQVSSGKKYESMSENPG
                     ATAQILSYNHVLSQLNREKTDVTEAKSLLNTAETSLSSMSTSMNRVNALVLQAINGTS
                     DKDNMSQSAEEIKGLLDVLISVANSEDDGRYVFSGSSTSVKPFTTDKTTGEIIYNGTT
                     ENKKFRVTDTLEVEVFHDGSAMTDVFNNIQKIVDAMKTGDKDALSALQETNSKNIEII
                     TNSMTNIGGQKNGVTAYDNVLSSKIVDFSERKSNVEEVNMPEAVSNLNKTSIAYQAAL
                     QSSVMVQKLSILNYM"
     gene            29619..30908
                     /locus_tag="U0342_000214"
     CDS             29619..30908
                     /locus_tag="U0342_000214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-associated protein 2"
                     /protein_id="HEM2421596.1"
                     /translation="MGSSIASSLMDPTQYYSQFISLQKASLEKAKTPYQNQISSYQSR
                     IDLYASLKNALSESLKTMSSFTTYESKTKLATSSNETSFTVSSTSSSVNGSYSIEVQN
                     LATADTYNKAVPDIEAKIGVSGTIKINGKEIKVDADSSMKNVMNSINSAGAKVNIYTL
                     GENMVVTSSTTGVENSIKFEGDSAVLDALGLVQNSPDHLAAEDAKLRINGATVTSATN
                     KVTNYIPGVTINLKKETTGAEKLTIQDQSDEKAASMITSFVNTYNALTSTMKTYTGKG
                     TILQASAVDLEANRALNNVFQHKKDGNTLFDFGISVDKEGVLKVDETAMKKMVAEDPT
                     AVERFFFGIGGIGDELYQSLNKTFGSTGFISDETTSMTNEINKLNLKLTDITSRNDTL
                     LTNITDQYNKWLEMMQAMQSDAMTLDALIDGMNSSNK"
     gene            30927..31313
                     /locus_tag="U0342_000215"
     CDS             30927..31313
                     /locus_tag="U0342_000215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein FliS"
                     /protein_id="HEM2421597.1"
                     /translation="MQAWKRYTQNELNTSNPIKNTIYIYERCIIEFKKLDKALEQLHF
                     SEADLILDKMEKIFEELKLQLNPEAGQELYDNIFGLYEWISEQIRQMQLLKQPVNIDT
                     IIHVITQLKEGYEGVMKHESSKDTFG"
     gene            31285..31566
                     /locus_tag="U0342_000216"
     CDS             31285..31566
                     /locus_tag="U0342_000216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421598.1"
                     /translation="MNQAKTHLVELKALFHSTGQLNVTLEEYQAKLNELLKSTEHLPK
                     DTKEAILKETREVINKGILFTQKQLESTENAFSENKSRNAANLNYAKFF"
     gene            31587..31988
                     /gene="flgB"
                     /locus_tag="U0342_000217"
     CDS             31587..31988
                     /gene="flgB"
                     /locus_tag="U0342_000217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgB"
                     /protein_id="HEM2421599.1"
                     /translation="MENYTTHIGNYLNYLQTANQVVSNNIANANTPNFKASEASFEES
                     FGSSLRASGQNSTESAGNLTKTNTKHLAGTDIDETNAKVTTKSGSINEDGNNVNVTSE
                     MISLTKNNQMYALAISALNYNSSINTAARGK"
     gene            32000..32410
                     /gene="flgC"
                     /locus_tag="U0342_000218"
     CDS             32000..32410
                     /gene="flgC"
                     /locus_tag="U0342_000218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar basal body rod protein FlgC"
                     /protein_id="HEM2421600.1"
                     /translation="MFEGINTSGSALNAAKQWMEVSSNNIANADSSAAPGETPFLRKR
                     VVLSEITPFETALTGTKGVKVSEISSDTGSVKRVYDPTHPNANEAGYVNYANVDMTAE
                     MTNLMVGQKMYAANTSALQANEKMMEKDLEIGKV"
     gene            32427..32723
                     /gene="fliE"
                     /locus_tag="U0342_000219"
     CDS             32427..32723
                     /gene="fliE"
                     /locus_tag="U0342_000219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar hook-basal body complex protein FliE"
                     /protein_id="HEM2421601.1"
                     /translation="MAIESINAASVLPKVTLGETAKTDNATGAGNTFTQMLDSMSDTQ
                     SNAQTSVSNLLTTGEGNASDVLIQMKKAESEMKTAAVIRDNVIESYKQLLNMQV"
     gene            32791..34443
                     /gene="fliF"
                     /locus_tag="U0342_000220"
     CDS             32791..34443
                     /gene="fliF"
                     /locus_tag="U0342_000220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar M-ring protein FliF"
                     /protein_id="HEM2421602.1"
                     /translation="MAKIKTMYSKLKNWHKGAILVGLFVVVTVLLLYMNTPKTEVTLY
                     KNLSETSQQQVTDQLAKMGVDYTVDKSGNILVDEKVETLVRDKFADLGIPYTGQDGND
                     ILLNSSLGASEEDKKMQEKVGTKVNLEKEIVQSYGTTIDSASVQLTLPESSSIFEEAS
                     QKGTAAVTLKTKNNQTLTSEQVLGIQRTVSAAVPNVASDDVAIIDTKNGVISEADTSK
                     EEGSSAYKNEVDIQNAIGKNVKTDIEGTLSSIFALDNFRVNTNVSVNFDEIKQNTEHY
                     PNDGKVRSNQKDTSTDTSKGSANTTESGTASNADVPNYTEQNGDDTNTYTSEKSSETT
                     NYELDSTIQEIKKHPALAKTNVVVWVDQNALNKNGVDMAEFTKAIGVSAGLTPNMTTE
                     EAGADGEAAAAPTFEGTFQNGDVTIMPIQFLDNATPAEKDTTEKAAPASKAWIWWLAG
                     SLLFAIIAAGIIAYIIFLKRKEQLEEALEPEEKDYIPAEEAIINPEEHPDFNFQTDAF
                     DLSEPELKARKESLKNKLGEMAKEDPGRAAAVIQKWLNERQE"
     gene            34446..35552
                     /gene="fliG"
                     /locus_tag="U0342_000221"
     CDS             34446..35552
                     /gene="fliG"
                     /locus_tag="U0342_000221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar motor switch protein FliG"
                     /protein_id="HEM2421603.1"
                     /translation="MAETLKETLEETNAELETVEVEETEEKTTTSADSGISRREKAAL
                     IIWSLDEQIATEVVDLLPDASKQRLAREMAKMKEMDGGAVEEATREFLGELELLSGGI
                     AKLDREHLQRLFPDMTTEELNQLIYGVEAESRIGETALDILREIDDVDSLFTIISDES
                     PQTIAMIASYMKPEEASKLLALLPEEKMINTVIGIASLEQFDSEVMQNVSNLLRIKLD
                     TMSNSSLNKTDGIKNVANILNNVTRGLERTIFEHLDAEQAELSERIKEKMFMFEDIIL
                     LDNMTLQQVLAEIQDNNKIARALKNEKEELKEKILSCVSKNRRDMITEELEVLGPIRL
                     SDVEQAQQDIANVVKNLEKDGKIVIQRGEQDVLI"
     gene            35539..36231
                     /locus_tag="U0342_000222"
     CDS             35539..36231
                     /locus_tag="U0342_000222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar assembly protein FliH"
                     /protein_id="HEM2421604.1"
                     /translation="MSLSNPRIPKGKVTLSDVKMELFYLDDIEETEEVESPYSKELEQ
                     LESHQKELEKHLSAIEIEQQKLANEKAALQAERQAIEELKREAETEIEANKQAFEKEK
                     TQMYLTITDFLWDESIDLAERIVHQAIDTRQIEVLPMLTEVIQKLPVAFDKLNVTTHP
                     ETLKALKEENTGTKYDWLLENIHWNFDMRLDYGEFTVEEEKEYFDYRITEIFQTLHKQ
                     NAERKILGGDKP"
     gene            36228..37529
                     /gene="fliI"
                     /locus_tag="U0342_000223"
     CDS             36228..37529
                     /gene="fliI"
                     /locus_tag="U0342_000223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flagellar protein export ATPase FliI"
                     /protein_id="HEM2421605.1"
                     /translation="MNWSPKTEAWQELKNTVPYIQKGKIHTVQEQVYISKGPQVKIGD
                     TVMVGENKVLCEVISIEKENNMLLPFNQSDKVAYGDWVYVTDTKITIPADEYLLGKVL
                     NASGDILNEEAGVAKFKQKMPLEAPPIHAFSRAEITDTLETGIKAIDGMLTIGIGQKI
                     GIFAGSGVGKSTLLGMIARNAKADINVIGLVGERGREVKDFLRKDLGEDGLRKSVIVA
                     ATSDESHLMQLRAAKLATSIAEHFRDQGKTVLLMMDSVTRFADARRSVDIAVKDLPIG
                     GKTLLMESYMKKLLERSGKTQNGSITGIYTVLVDGDDMNGPVPDLARGILDGHIVLTR
                     ELATKNHYPAIDVLGSVSRVMEEIVPESQWKTASKIREWMSIYQENELYFKLGTIEQT
                     SDNAAIFTSKEKSYFIHQFLKQLRDESVTLEETSKLMETLV"
     gene            37546..38214
                     /locus_tag="U0342_000224"
     CDS             37546..38214
                     /locus_tag="U0342_000224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic transglycosylase domain-containing
                     protein"
                     /protein_id="HEM2421606.1"
                     /translation="MNPVEQVISARQAEFQSAFEAAKQSATTFETKLNERLNETTTAK
                     TTSVLTVTDAELTRAREAYEALINQSDTNSAASASSTTTETPTTSTGESTNWNNYQIK
                     PISAENEGKYSDLIKTSAAKYGVPEALIKRVIQVESNFNPNVVSSAGATGLMQLMYGS
                     NRTDPATNIDAGTKQLAGYIKKYDGDLKLALAAYNAGPGNVRKYGGVPPFKETQNYLT
                     KIIG"
     gene            38228..38872
                     /locus_tag="U0342_000225"
     CDS             38228..38872
                     /locus_tag="U0342_000225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421607.1"
                     /translation="MGNWQQKWESWRDMTVAMQQEIKIEAAEKVTSYIKNDQFEEAIN
                     VIRQTENLLNELDFETKMNRVEEQLQAFTSDQEAAKSFEASQLQNLEKPSTKVSFDLS
                     HVKSEAINQFTKRDFNLVDSNDTHMQFLKGNRNFYMDIFNPEESEEYHYANLDEKCQY
                     KNIGFICQNDAAAEIATKLTNEWLETLEAPKKKFLTVNIANLNAMKQNQEVLFQ"
     gene            38991..39317
                     /gene="lftR"
                     /locus_tag="U0342_000226"
     CDS             38991..39317
                     /gene="lftR"
                     /locus_tag="U0342_000226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464246.1"
                     /note="act as a regulator of LieAB which is involved in
                     aurantimycin A resistance; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator LftR"
                     /protein_id="HEM2421608.1"
                     /translation="MKGLTELLKGSLEGMILERISRGETYGYEITKYLNDLGFDEIVE
                     GTVYTILVRLEKKGLVEIEKKKSELGPPRKFYTLSPAGEEELAIFWKRWDFIQGKIMQ
                     VKGGQA"
     gene            39317..39640
                     /locus_tag="U0342_000227"
     CDS             39317..39640
                     /locus_tag="U0342_000227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1048 domain-containing protein"
                     /protein_id="HEM2421609.1"
                     /translation="MFNWYKKYREEKRDYKQYKKRIAALPEDYKTAMKAIETYLWNFA
                     KGAGMFEILKNVLEMFENAAADNLELKAVVGDDLAEFADNLLSEFPEETWMDKQRQKL
                     RDSIK"
     gene            complement(39683..40330)
                     /locus_tag="U0342_000228"
     CDS             complement(39683..40330)
                     /locus_tag="U0342_000228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor G-binding protein"
                     /protein_id="HEM2421610.1"
                     /translation="MKEFIEPYQYNFIKNQLANVSRAYRSANDTSTLKALKSLTEEKI
                     NELFPESVLEEHKELFSELHAITSTKEAEPFLDGLKAYVIPFAPPSDVKLKKLFAKTK
                     KLKIPAWSKLDLRDYTFYGWNDIAQQRKYIVTYEDGNLVGVQGTISTEIQKGVCSICH
                     SHSKVSLFMAKTKSSSDGIYTTNGNYICYDSDVCNQQIKTHETLDEFIEVVKKRK"
     gene            40601..42331
                     /locus_tag="U0342_000229"
     CDS             40601..42331
                     /locus_tag="U0342_000229"
                     /EC_number="1.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate oxidase"
                     /protein_id="HEM2421611.1"
                     /translation="MKKVKASETLVQTLKNWGIDHVYGLPGDSIDTVVDALRKEQEAI
                     EFIHVRHEEVATLAAAAYTKLTGKIGVALSIGGPGAIHLLNGMYDAKMDHVPMLVLAG
                     QVTTDVLNTGFFQEVNLPAIFEDVAVYNKQIDNAETLADVVDEAIRTAYKEKGVAVLT
                     IPNDIPSQVIKASLEAKTVKFEQENPKLDEAAIQEAVARIEKAEKPVILAGLGTKHAG
                     PELIAFSEKLKIPIIHSLPAKTIVPDNHPNALGNLGKIGTKPAYEAMQETDLLLMFGN
                     DYPYSDYLPKKADCIQIDIDPAKISKRFPATVGLVGDAAEIIGNLTAKTAPVEERKFL
                     QACQENMQEWWKWLEEDIAQTTDPIAPEVVMANIQKIADKDAIFSIDVGTATVWSTRY
                     LHLTPQNDFIVSAWLGTMGCGLPGAIAAKKAFPDRQAIAIVGDGGFSMVMQDFVTAVG
                     LNMPMIVVVLNNQQLSFIKYEQQSAGELNYAIDLPDINYAKFAESCGGIGFRVEKMAD
                     LEAAFGNAKLATKPVIIDVSVDSAAAPLPGKIVMDEALGYTKFEIQSVLEDHRFAKMP
                     PLKTILRRFL"
BASE COUNT        14674 a         7917 c         9011 g        10848 t
ORIGIN      
        1 ttttttcagg atttggtgta aaattttata ttgcagttac aaaaaacact ttattgatat
       61 atattttgaa aaaatgattt atttttgtaa tctgatgaag ggagtgaaag gtgaatttac
      121 cttacttgaa tggaatattt tttatcactt ttaaaaatta ttgtactttt agcagtactt
      181 gcgggaattt cttatttttt agttaagaaa aacaagcaag cgaatcgcac gagaaaaagc
      241 gaaaatgatc ttataaagtt gaaagacact cttttaatct ctcatcagtt acgtgcagtt
      301 cttctggagg cagacgggga aaaggtgctg gcgattattt ccaataatga tattcgaacg
      361 gtgtcattaa aaggaaaaac tgaccaaaat gaagcacttt tccgagaatt acttttgaaa
      421 gaggagacta aggaaaatgc gtaaaatagc ttctagacga gtatttcaag tatcttttat
      481 tgttattttt gcaatttcat tggttgtctt ttggccaggg gtgaatgtgc atgcagaaag
      541 ttggctggac tcacttggtg tgaatgggac ggatggggtt aattctagtg tggcgctgtt
      601 tgtactagtt acggttcttt ctttgtctgc atcgattgta ttaatgttca cacactttac
      661 ttactgtatt atcgttcttg gtttaacgag gcaagggctt ggcgcgacga acttgccgcc
      721 caaccaagtg cttgttggac tggcactgtt tttatctttg tttatgatgc aaccacttat
      781 tactgcttgg tatgacgatg tgtataaacc ttcgcaaaaa gaagagtgga gcgcatcaaa
      841 agtatgggat gaaacaaagc cgcttttgac aaaatatgtc gcggaaaata catataagca
      901 tgatattaac atgatgttga aagcagaagg agaagatcca gttacaaaaa aagaagatgc
      961 tccgcttatg gctttaatgc ctgcttttat tttgacacag attacccaag gttttttaac
     1021 tgggatgttt atatacttag cgtttatttt tatagattta attgttagta cgttactgat
     1081 gtatcttggg atgatgatgg taccgccgat gaccattagc ttaccgttta agattcttgt
     1141 ttttattttc attggtgggt acggattgat taccaacatg atttttcaaa caattcactt
     1201 ttaagggagt agcaaaatga atttaacgcc gattacgcaa atttttcaag attttttcta
     1261 tagtgggctg gcgcttattt tgccggtgtc gctcatttgt atcgtggtag tgattgtggt
     1321 ggcgatattg atggcaatga tgcaaattca agaccaatcg ctgacgtttt taccgaagat
     1381 tgttgctttc gtagtggcgc tatttattct tggaccgtgg atgtttgaac acatgacgga
     1441 tttgtttgta ggaatctttt ccaaattacc cctgatgatt agggtgtaaa catggagttt
     1501 gaatttttcc ttgcggtagt gattgttttc agccgagttg ccagtttttt attcttcttt
     1561 ccgcttttaa aagggcgaaa cattccgaac agtgtcaaag tggtttttgg gatggcgatt
     1621 tccattccag tggcaacagg ggtcgatgtt tctggtataa cgacgctacc agatttgcta
     1681 ctccgggtaa cgtctgaagt ggtttttgga ttagcgctgg cgaaattggt ggaaattatt
     1741 gcggtaattc caaaaatggc tggttttatg attgattatg atttaggatt ttcgcaagta
     1801 aacttgattg atccttctta cgggacacaa aactcgatta ctgctgcgat tttagatact
     1861 ttctttgtag tgatattttt gtcacttcaa ggcatggatt acttgattta ttatttaatg
     1921 aaatcgtttg aatttacggc ttcggtgtcg attttatttg aaaaagggtt tattgatttg
     1981 ctgcttggga cgcttggttt tgcacttgct tccgcggtgt cgattgcgct cccgattatg
     2041 ggtagtattt ttatcgttaa tatcattctt gcttttatct ctaagagcgc tccgcaaatt
     2101 aacattttta tgaatgcgtt tattataaaa attacgtttg ggattttcat ccttgcgtgt
     2161 gctgttccta tcttgagtac agtttttaaa aatttgacag atgagatgat tcaacaatat
     2221 gtgtcgtttt ttgattattt actgaaaaaa tagggaggag aaaaaagctt ggcgaaggat
     2281 aataagacgg aaaaagcaac gccacgccgc attaagaaag ctcgaaatga aggtaatgtg
     2341 gcgaaaagta aagaactaaa taatgctttt tcactgctaa ttgtagctgg gcttctttat
     2401 ttttttggag aaatgtttat taaaaacacg attcaagcat ttgttgctct tttgaaacag
     2461 ccaccgaagc ttgcgaacat ggaaagttac agtttgtttt acttgatgga gtttggcaaa
     2521 gtgttgatgc cgattatggt gatggttgtg atttttggtt tgatgaacta cggcgtgcaa
     2581 gtcgggattt tattttccgc gaaagcagtg aaacctcagt tcaaacgact aaatccagcg
     2641 aactacttta agcgagtgtt cagtgtgaag ggaattgtcg aggtggtgaa agcgctactt
     2701 ttaattacgt tgctttcata cgtggcgtat attggctttc gggatcatct agacacgctc
     2761 attagttaca ccgggcaaaa ttggctttac tcactcggac aaattttcgc tttattcaaa
     2821 aatgaatttc tggcgctctt ccttgtaatc gcagtaatag ggctgcttga cttcttttac
     2881 cagcgttatg actataaaaa aggcttgcgg atgtcgaagc aagaaattaa ggacgaaatg
     2941 aaagattcag aaggtcgacc ggaagtgaaa cagcgccaaa gaagtattgc gcgtgggctt
     3001 ctccaaggtt cgattacgaa aaaaatggcg gacgcgactt ttgtggtgaa caacccgaca
     3061 catatttccg ttgtgatgcg ttatgacaaa acaaaagatc atgcaccgaa attgctcgtt
     3121 aaaggggaag acgagctggc actgtttatt cgtcaggtgg cggatacgga cggggtgccg
     3181 atgattacaa atagacaact ggcacgaagt atttactata cgacgaatcc agatgaatac
     3241 atacaagaag atttatataa agatgttatt gaagtgatga aagaattgat ggacgcagac
     3301 aaaatcaagt tctaacaaca tatgagcgac ctttctaatc ttagaaaagg caggtttcaa
     3361 aatggggaat ttaggtgcta taaaaaaata ttttgctatc ttgattgcgg tctcgtttgt
     3421 tattgcactt attgtgccat tacctccgtt tgtattggat ttagtgcttg tgacgatctt
     3481 ggcgttctct gtgttagttt acatgcgtgc cacatcaatt aaagattgga atgaattaaa
     3541 gtcatttccg tctttactac ttttgatggg gatatttcgg gtttcgataa atatttcgac
     3601 gacacgggcg atcttaacta ctggtgatcc aggacaagta attaaacaat ttgggaattt
     3661 tgttattggt agtaattttg ttgttgggat tgttattttc attattttaa tcgtctttca
     3721 gtttattgtg gcaaatggtt cttcgcggac agcggaggta gcagcaagat ttacgctgga
     3781 tgctttgccc ggtaaacaaa tggcgattga tgcggatttg aatcaacggt tgattacaga
     3841 gccggaagcg aaagaaaaac gcgcatattt gaatatggaa accgaattct acggagcgat
     3901 ggacggagct gggaaatttg taaaagggga tgttcttttt accgttttgc ttgcagttgt
     3961 aaatattgta ttcggtttaa ttgtcggtat ggtccaaggt gggctttcgt tcggggaagc
     4021 tgcggtgaaa tatacggagt taacaatcgg ggatggcatc gtgagccaga ttggttcact
     4081 tttaatggcg atgtcagctg gggttattgt aactcgggta tttgacggat cagatgataa
     4141 cgttgcggtc gggattttca aagaattaat gcaaaactcg gtggtcgttt atacgctcgc
     4201 tgccatgttt atcttaatgg gtgtatttag cccactacca acgattccat ttgttggaat
     4261 tggcgtagtg cttggaataa tcggctatcg tacgcaattc aatttaaaga aaaaagagca
     4321 attggaactt gaaaaagaaa tggagcttat ccagtcggaa accagctctg ctgaagcgga
     4381 acacaatcaa gcatttggcg cagcacgaga aaaattccct gtagttgtgg aacttggctt
     4441 aaacattgcg gctctcgtga aacaaaaaat gaacggagaa acggcaaaag ataaagtcgt
     4501 cttaatgcga aaatcaattt tacaagattt aggtattggg gtcccgggga ttaattttaa
     4561 agataatacg agttttcagc cgcgcgggaa atatgagatt aaggtcaaag gtgtggctgt
     4621 tgcgagcggg gttttaaagg caggacattt attagcgcta aaaacaccag gcgtgatgat
     4681 ggaccttgat gcggagccga ccaaggatcc gattttcggg gaagatggtt actggatttt
     4741 gccgggtgag ttagaagatg cgcagatgaa aaactatcaa gtgctcgaac cgcttagtat
     4801 tttaattacg catttggatg ttgtgctgcg gaagaacttg catgagcttc tgatgcgcca
     4861 acaaattaaa gatttaattg acggacttgc tgatgaaaat caaattttaa ttgatgaaat
     4921 taagaaaaaa gaaattgatt attcgctaat tcaaggggtg ctacgacaac tcttgaaaga
     4981 agggatttcg gttcgcgatt taccaacgat tgtcgaaggg attattgatg gacaaacgat
     5041 ttatccgaat gatcttgatg gcattacggc atttgtcagg gagcggattt cgaaagtcat
     5101 ttgtgaacaa gcgaaaaatc aagatggcaa aatttacgcg ctacttttgc aagattcgat
     5161 tgaaatggat acagaaattg tcaacacgcc gtattatggc tacgcgctga actgggcgct
     5221 cgacaaggaa ctgccaatca ttcaaaaagt aagagatacc gtgaataaag cgcaactcac
     5281 tggtcgtgaa cctgtcattt taacaaggcg aaaagatttt cgatttggct ttgtgcgagt
     5341 tttggaaaga tatcaattgg acgtgccggt gctctccatt agtgaactgt cgccggaaac
     5401 agaagtggag caaattgcac tgattgaacc aacttgatga gggaggtaat ccgtagaaat
     5461 gggaaaacat ttagtagaaa agatggaaat ttttaaggcg aactccaagc gagaaataca
     5521 taaaaaaatt cgcttagtca cgaatgagcc atataaaatt acggatgaac gtgtcacaaa
     5581 gcttggtatt tttaagaaac agtatgaagt gacggcggtc attatgagtg aagtggcgat
     5641 agcagatggt cgaatggact ttcaagaaac atttcaaaaa tcggttgtca aaaacagacc
     5701 gaaaacagac gacttattaa aaaaagaaaa attactagaa atgcttgctg cgggagcgga
     5761 actagcacag tcaacgccgc ttttagaaga acgaaaaaca caggaagaag aattgtcagc
     5821 gatgcgtctc gaactagcgg ctttaaaccg cgagcttgca gtgaaaatgc gcgaggagcg
     5881 tgaacaaaac agtgatttcg tgaagttttt gaagggtcgc ggaattagtg atacgtatgt
     5941 ggcggacttc atgcaggctg ggcggaagca gtttaagcaa gtagaaacgg cgcatttgga
     6001 tgatattaca gattggttcg ttccttattt atccggaaaa ttagcggtgg aagattcgtt
     6061 tgatttaagc aaccaccgaa ttatttcctt gattgggcaa acgggtgttg ggaaaacgac
     6121 cacgcttgtg aaacttggat ggcagctgtt aaagcaaaat cggacagtgg gctttatcac
     6181 tacagatact tttcggtcag gcgcagtgga gcagttccaa ggttatgcgg acaaactcga
     6241 tgtggagctt atcgttgcga cgagcccggc tgaactagaa gaagctgtgc agtatatgac
     6301 gtatgttaac tgcgtggatc atattttgat tgatacggtt gggagaaatt acttagccga
     6361 ggaatcagtg agtgaaattt ctgcctatac cgatgttgtt catccggact taacgtgttt
     6421 tacattttct tctggaatga aaagtgcgga tgtgatgacg attttaccaa aactagcaga
     6481 aattccaatc gatggtttta tcattacaaa aatggatgaa acgacgcgta ttggtgattt
     6541 atacacggtg atgcaagaaa caaatttgcc ggtgttatac atgacagatg gacaaaatat
     6601 tacggaaaat attttcagac caaaaagtcg ttggttagcg gagcggtttg ttgggacaga
     6661 tagaaggcgg gtgctggaat gaaggggtta tacattggcg cagcagggat gatgaactac
     6721 atgcaacata ttcaagttca ttctaataac gtggctaacg cgcagacgcc aggattcaaa
     6781 tttgatcagc ttacgagtga agtgatttcg cgaaacaaag tgaactatca aaatgggcct
     6841 gtcgctaggc aagttgggac aattgattac ggtgttcgac ctgctgcgac gcatattaat
     6901 ttgacagcgg gatcaagcta tattacgaac cgcgaccgag atttctttat gcaagacacg
     6961 gatcctacgc aaggaagtaa ttttttcatc actgctaaaa atggcgaaat ttcactttca
     7021 cgtggcgggc agtttcactc cgatcagttt ggttttctgc ggacagcaga tggcgccaat
     7081 ttactcagtg cgactgggga agcgattcaa gtggggcaaa aaacgtcgat tcgcgccgaa
     7141 gcaaatggtg atttatacaa tgcggaaaca ggtcaatact tgggccgcct tggaaccaaa
     7201 tttgtttccg ctaatcaagc agatagtttg gtgaaagacg gcgaaggtag acttcatgta
     7261 aatggcataa acacaatgaa tttaccagct ggacaaggga ttatccaaaa tggagttatc
     7321 gaaacgtcta atgttgattt aggcgtagaa atggtacaac tcatggataa ccagcgcatg
     7381 gtacaagctt caaaaaatgt cgttaatatg tttgataaag tgtacgacaa agaagcaact
     7441 ggattaattc gtcagtaacg acctagctag ggggagggga aaaagaatga ttccagattt
     7501 ggaaaaggat tatctttact ttactcgtgt cgtcaaaagg gacttaggtt tagatttagc
     7561 gctttataaa gaaacgcaaa tgaaacgtcg aattttatct tttatcgtga agaagcaata
     7621 tattacattt ggagaatttt tcaaacatct caaaaaagat gccgttcttt tagatgagtt
     7681 cattagtttg attacgatta atgtttcgtc gtttttccgt aatcgcaatc gctgggatgc
     7741 gctggaaaaa caagtacttc caaggttgct ggaagatagt cgcgggaagt tacgggtttg
     7801 gagtgcggct tgttcatcag gggaggaacc gtactcgcta gcgatgatga tggaacgttc
     7861 agttggcaca aggcattatg atattttagc cacagacctc gaaccagcta ttttaaaacg
     7921 cgcggtcatt ggagaatatc aaagccgtca aatggaagaa ctaaccgaac aagaacgtca
     7981 tacggcattt gttgaaaaag gggatacata tcagattttg cctaaatatc gaaagtcgat
     8041 tcgttttaga cggcacgatt tgctgaccga ttattacgaa aaaggttttg atttaattgt
     8101 ttgccgtaat gtgttgattt atttcacagc agaaggaaaa caccaagcat atcagaagtt
     8161 tgcagagtca ctaagacgtg gcggcgttct tttcatcggc gggtcagaac agattttgaa
     8221 cccagctgat tacgggcttg ccacattaaa taattttttc tacataaaaa cctagcaaaa
     8281 aagaaatgga gttggttaga tgggacgaat agaaaacatt aaaaatttag cgttttttga
     8341 ggacaaacct ggactcgcag aacaaattct catgcttgaa aagaaaacac aacttttctt
     8401 accaaatgaa tttgaaatta gacaaacagt tggctatgaa atcggggata aagaagttat
     8461 tctaggccga ctcgagtcat tttattttct cgctttaaaa ggtgtgggag aagataacta
     8521 ccgctcgcaa gcatttgcca gtgaagcgga tgctaaagcg tttttcgttc atttaccaga
     8581 aatggaaaac gagttagttg ccttttggtt aaatgaagtg gaattagttc gctgaaataa
     8641 gtaggtggga gatgaagtaa cgtggaaata acaacgatta taggacttgt gttggcagtg
     8701 atagtcattg caggttcgtt catgattcaa aatatatcac tggcgatgtt atttagcgct
     8761 gaagctttaa ttgtcatcat tcttgggaca attacggctg ttatgatggc gcacccatgg
     8821 agtgatgtaa aagtagtacc gaaacttttt aaaattcttt tcacaaaaga gaagatgccg
     8881 gacaaagtgg aagtactcgt gcaatacaaa gaatacgcag acgaaattag gcgtagcggg
     8941 gtacttgcgc tggaagattc tgtcgatgaa attgaagatc catttatgaa acgaggcatg
     9001 cgcttagttg tagatgggca gtcttcccca gaatttttac gggacgtttt ggaagaagaa
     9061 gtagcgagta tggaagaacg ccatgctgct tatgcgaaga tttttgcatc agctggagca
     9121 tatgcgccga cgcttggtgt actcggagca gcgatgggac tcattcatgc gatgggggaa
     9181 atgtcgaacc cggacaaact tagcgaagca atagccgcgg cgtttgtttg tacgattttc
     9241 ggtattttta ccggttacgt actttggacg ccatttgcca ataaattaaa agtgaaatca
     9301 caaaaagaag tgcatttgag atatatgatg attgagggag tcgtcgcgct tcaagagcga
     9361 aatgcaccac gggttgtgga agaacgttta ttatcttttt taagtccaaa agagaaagat
     9421 gtgctgcgaa atggaaaagg gaagaaaacg agagaagtgg aggaaattga gcgtggccaa
     9481 gcgtcgcaag aaaccgcagg aggaacacgt tgatgaaacg tggttaattc catatagtga
     9541 tttgctgaca cttttacttg cgctattcat cgttctgttt gcctccagtt ccgttgatgc
     9601 taagaagttt gaacaaatgg gaaatgcatt taagaaaatt gtagaggaag gcgcggcagg
     9661 caatcaagca tatgtatcca aagaaaaagg accagatgat cctaatgtga atgcagtctt
     9721 gaaggcgatg gaagagcaag ataaaaagaa agaagcaacc gaacaagaga aagccaaaaa
     9781 agcagcagcg gccttactta aaaagcaaaa cgaagaaaag attgaagcct ttaaaaaaca
     9841 aattgatagt tatattgcag cagaacattt gggagcaaaa atgacaacga aatactcgga
     9901 tgaagggctt ttgataacta tccgtgatga tattttattc cagtcgggaa gtgcagaatt
     9961 aactgcagga aaacgcgaga ttgccaaaga aatcggcgaa ctttttgcgc aaggaaaagg
    10021 aacgatggaa gggattgttt ctggacatac cgataatgtg ccaataagca cctcaattta
    10081 ctcttccaac tgggaattaa gtgtcgcgcg cgccgttaat ttcatggaag caatcattca
    10141 agaaaatagc gaagtaaacc caggcgagtt cagtgctcgc ggctacggag aattcagacc
    10201 tgtcgccaaa aatgatatcg cagcaaatcg cgaaaaaaat cggcgtgtag aaatcatggt
    10261 acgcccaatt aatcgcgata cgctagatga agatgagtag gtgaagtgtt tgcaactttt
    10321 tttaagtggt tcgcatacgt taaccgacta tgacaaacaa gaaatacaag catacctcga
    10381 aaaatttgca ccagtgaacc acattcactt gctttgttat aagtcgattg aaaatgaagt
    10441 gttacaattt ttcttgaaaa aagagcatct ggcaccgcga ctatcgattt acacttttgc
    10501 accgaaagaa tgtttgccag agccgttttt atcgacgata gactatctgg aatgtctagg
    10561 cagtagctat cagtcatttg gttatttcga tacggtgatt gctaagccga cttatgagaa
    10621 attcttagca caaattgtta gtaaaatgga tttggtttgt tgtttttata acggggataa
    10681 gccgactgat gtgataccag tcgatgtcgc gaaatcgttc gatgtgcaaa gtatgattta
    10741 tgatttgcca aaagcgaaaa aacatctact gcaccgagcg agcagcgata aaataaaatt
    10801 agtgaattaa ttgatagaaa gagggaagat tcatgcggcc gttaatttcg atttgtatga
    10861 tagtcaaaaa tgaagcacat attttacgac aaagtttagc gtcttttaga aaatttacag
    10921 aagaaatcat tattgtagat acaggttcca ctgacgaaac caaggaaatt gcacaagaat
    10981 tcactgattt tgtctatgac tttgaatgga ctggcaactt ttctgatgca agaaactttg
    11041 cggccaaaca tgcaacgggc aaatggattt tagcgattga tgcagacgaa tgtttggaag
    11101 aagaaagtta tcgcaaatta gaaaaacagt taaaatcacc aatcgaacca attcaaatgg
    11161 cgcaaattat tagctttaca ggggaaaaag ggcgagtgac aacaacgaac caaatggcga
    11221 gggtttataa aaatgacgga acgatttgct tccgtggcgt cattcatgaa caactagaag
    11281 cggtagacaa acacccgatt gcagctgggg ttgctgaagt aaaaatttat cattatggct
    11341 atatgacgga gattgtcgaa aaacaagaca aatcagaccg taatttacgt ttattagaaa
    11401 aagaagtaaa aaacaataaa aatagcggat ttgtacattt taacattggg caagaaatga
    11461 accgacttgg taataagaag gaagcgctga aagaattttc cgaagcgttc cgactacgtg
    11521 accacaatca ctacatttgg gcgaaactaa gtgcttatca tattgccgaa ctactcgaac
    11581 aagaaaagcg ctatgatgaa agcttggcca ttatcgaaga agcaagaatc atttggccaa
    11641 acgtaccaga gttcccacta aaaaaagcta atattttata tgtgaatcac caactcgaag
    11701 atgcgaaaga aatttatcaa agtctgctag aaaatacagc aattgactac caatcaatcg
    11761 tgctttacga agcaaccaat ttcatgccac acaaaatgct cggaacgatt tacttagaag
    11821 aaaaagatta tacgcgcgcg atgactcatt tttctaaagc ctatgcggaa aatagttctg
    11881 attacggtgt gatgttccaa atgattatgc tgcttagcaa attccatcaa ccaaaagaaa
    11941 tttttgcctt tatggaacgt catcacttta tctctagcac agaaactggt ttgcgcttac
    12001 tttcgatgac aacccaacaa ggctacgcag aattatctga actaattgtt caatcactaa
    12061 ccgatgtgta tccacctatc gcagaagcaa cagaggtgaa gattgcaacg atccgcaacg
    12121 tcttcccggt aattagcgaa tctgctattt tattcggtat taaagaagag ttgattgatg
    12181 cagctgactt atgtttgtgg cactatgaaa atccgcaatt accaatcgaa cgtgtcatga
    12241 aaaatagcga tgttggcgac atttatgatt ttatctttga aaacggtcca cgaattagca
    12301 agaaacgtta tttatttgta ttagagcggg cgattgcact tggaaaaggc gagtttgctg
    12361 attacttatt ggcacttcgt aacgtttatc atgacagcat taatagccac attgcagatt
    12421 tatttttcca atatgatttt gcggatatcg cgctcgattt ctacaatatc gttgacgcag
    12481 acgaagtgac caaacaaggc tatatcaacc taattaatta tttagtagat gccgaagtac
    12541 tggatgaggc acttgcgatt gcagaacgtg gcattgataa ttttagtact gatttccgct
    12601 tttacctttg gacaatcaaa attgataccg aaaatcgcgc gaatcgaatt agtgaggcaa
    12661 tggacgaatt tccgaataac cgctatttag caaaactgtt ggatgaagtg accatgcttc
    12721 aagacactgt tacaaacaat cgataggagg ccagtaatat gacagaagaa aaaggaattt
    12781 tactacaaag tggaacaaat gaattggaaa ttgttacatt tactgttggc gaaaacttat
    12841 tttgtattaa cgttttaaaa gtgaaagaaa ttattcatcc gctcgaagta actcctgtac
    12901 cagattcgaa cccggcaatt gaaggcgttt cccaagttcg cggcgaaatc atgccagttg
    12961 tgaaccttgc ccgtgtgatg aaattgccag aaattgagcc agaaaacacg aaattcatta
    13021 tcacagaact aaaccaaatg aaaatcgttt tccgtgtcga tgaggttcat cgtatccaac
    13081 gtatttcgtg ggaacaaatt gaagaaccag aaaaactatc gattggttta gaagaattag
    13141 cagtcggtat cgtaaaatta gacggcaact tagtactctt attagattat gaaaaaatta
    13201 tttacgaaat tagcggaaat gctgattttg ctgtcacagg tgaagaccgt atggcgcgaa
    13261 aagtaaatcg tgaagagaag acgattttta ttgccgagga ctcacaaatg ctgcgccaac
    13321 tgcttgaaga tacgcttcat gaggccggtt atacaaatct gcagttcttt gcaaatggtc
    13381 gcgaagcaca agagcatatt ttcaaattgc tcaaagaaca aaaagaacaa acgtttgaaa
    13441 atgttaactt attaatcacc gatattgaaa tgccgcaaat ggacggacat catttaacaa
    13501 aagtaatcaa agaagatgaa attggccgtg aattgccagt tgttattttc tcttcgttaa
    13561 ttacagaaga tctggaacat aaaggcgcag gtgttggagc cgatgcgcaa gtaagtaaac
    13621 caaatatcca tcaactcatt aatattttag atgagctagt tttgtaaaaa gaagtgtttg
    13681 aacaaccttt tctgttcaaa cacttcttta ttttatttaa aaaaataatt tataaaaacg
    13741 taaaaacgtt gataataagc cgatttccta tttttatata aataaaaaca acttattttc
    13801 gcatttttaa taaaaaacat ttgatttttt aaaaaaatga agatataata aagcatatag
    13861 agaagagaag tcttttctaa accgaatgta ggagggaaac acaaatgaaa gtaaatacta
    13921 atatcattag cttgaaaaca caagaatatc ttcgtaaaaa taacgaaggc atgactcaag
    13981 cgcaagaacg tttggcatct ggtaaacgta ttaacagttc tcttgatgac gctgctggtc
    14041 ttgcagttgt tactcgtatg aacgttaaat ctacaggctt agatgcagca agcaaaaact
    14101 catccatggg tattgacttg ttacaaacag cggattcagc tcttagctcc atgagttcaa
    14161 tcttgcaacg tatgcgtcaa ttagcagtac aatcttctaa cggttcattc agtgacgaag
    14221 atcgtaaaca atacactgct gaattcggta gcttgatcaa agaacttgat cacgttgctg
    14281 acactactaa ctacaacaac atcaaattac tagatcaaac tgctacaggt gctgctactc
    14341 aagtaagcat ccaagcgtct gataaagcta atgacttaat caatatcgat cttttcaatg
    14401 cgaaaggtct ttctgctgga acaatcactt taggtagtgg ttctacagtt gctggttata
    14461 gtgcattatc tgttgctgat gctgattctt ctcaagaagc aacggaagct attgatgaat
    14521 taatcaataa catctctaac ggtcgtgcac ttctaggtgc tggtatgagt cgccttagct
    14581 acaatgtatc taacgtgaac aaccaatcca tcgcaactaa agcatctgct tcctctattg
    14641 aagatgcaga tatggctgct gaaatgtccg aaatgactaa atacaaaatt cttacacaaa
    14701 catctatcag catgctttct caagcaaacc aaacaccgca aatgttaact caattaatta
    14761 acagctaata acatatcaaa ttcatttatc gaacattgtt tacccttagc ccctcgtcac
    14821 cccggacgag gggcttttct ttttatttat aaaaatattt ttggattaca aatagggcgc
    14881 agagccaaag ttaagatagt taactatttt ttaaataatt ttattataaa aaacggatat
    14941 tttttaagaa aaaggtagaa attgtcctat ttttattata aaatgatatt atgcgatttt
    15001 tttaaaaaat atttataggt ataggaatgg gagttgtatt ttatgttgaa gttgttgatt
    15061 gtcgacgatg caatgttcat gcgtacgatg attaagaata tcgtgaaaga tagcgatttt
    15121 gaagtagttg cagaagcaga aaatggactg gaagcagtga aaaagtatga tgaagtaaaa
    15181 ccggatatcg tgacactgga tattacgatg ccagaaatgg atggcttaga agcacttgcg
    15241 caaattatgg ccaaagatcc atcggcgaaa gtaattatgt gctcggcgat gggccaacaa
    15301 ggtatggttg tagacgccat taaaaaaggt gccaaagact ttatcgtaaa acctttccaa
    15361 gcggaccggg ttttagaggc gttagaaaaa gcagctaagt agagaaatgg aggtggatag
    15421 catgactaca aatatgttag acctgtttat agaagaagct tcagaacatt tacaggcgct
    15481 aaatgataat ctgttacagc ttgagaaaga cccgacgaac ggtcagttag taagtgaaat
    15541 tttccgttca gcacatacat ttaaagggat gtccgcaacg atgggcttcc aacaggtggc
    15601 tgatttaacg catgcaatgg aaaatgtact agatgaggta cgcaataatc gattggctgt
    15661 aacagaacat ttggtagaca ttatttttac atgtacatct catttggaaa caatggtttc
    15721 ggatatccag cacggcggac aaggcgcggc ggatatttcg aaaaccgtag ctgacttaga
    15781 ggcgctttta catccagaac aagaaacaga tttagcggta gaaaaaacgt atcgcattca
    15841 gattcgaatt gaagaagcag ctattttgaa agcagtacgg gcggtaatgt gtttagagcg
    15901 acttgcagaa atggggatta tttcagaaac aacgccagac agagaagcga ttgagctaga
    15961 agagtttgag cagtcattcg aagtagtcct agagtcggcg caaacaaaag aagaaatcga
    16021 agcggttgtt ctagatattt ctgaaatcga aaaagtgact gtgacagaag aagtggaaga
    16081 agttcaggtt attgaaccaa tcaaaaaagc cgcaaaacaa acaaccaaac gattagaaaa
    16141 taaaaccatt cgtgtacaac ttgaaaaaat cgaaaagcta atgaacgttt ttgaagaaag
    16201 cgtcattgaa cgggcgagaa ttgatgaaat cgcagaaaaa acgaataaca aagaattgat
    16261 ggaacactta ggacgattca gttccatctc caaagaaatt caaaacggct tactaaatat
    16321 gcgtatggtg ccagtggata gtgtgttcaa tcgctttcca aaaatggtgc gcacactagc
    16381 caaagaatta ggtaagaaaa tcgacttagt gattgaaggc gcggatacgg aagtcgacaa
    16441 aatcgtcatt gatgaaattg gcgacccact tgttcactta atccgtaatt cagtagacca
    16501 cggagctgaa acagtcgaag taagacgtaa aaatgggaaa aatgaaaccg ccacaattaa
    16561 tctaaaagct ttccatagtg ggaacaatgt cgtgatcgaa attgcggatg acggtgcggg
    16621 aatcaataaa cgcaaagtgt tagaaaaagc gattgcgaaa aatgtcgtta caagagcaga
    16681 atcaaccaaa atgacggacg cggaaatttt tgatttatta tttgattcgg gtttcagtac
    16741 cgcggatcaa gtatccgatc tttctggccg aggcgtggga ctagatgttg tccgtaatac
    16801 gattctcaaa atcggcggaa aaatcagcgt agaatcaagt gaaaacgctg gttcgacgtt
    16861 ccgaattgag attccgctga cattatcgat catccaatcg atgctcgttg caacatcaga
    16921 acgtcgctat gctgtaccgc tggcaaacgt ggccgaagcc atcacaatta atcctgcaga
    16981 cattcaacac gttcacggca aagacttaat caactaccgt gaaaccatta tcgaagtact
    17041 cgacttaggc gaatgcttcc atgaaacacc tttgaatgac acggatgaat tactattact
    17101 cgtcgtgaaa aatgccaagc gaacttttgg acttattatt aaagatatta tcggtcaacg
    17161 ggaaatcgtt ttaaaaacac ttggtggctt tttcagcgaa agtcagattg ccttttctgg
    17221 agcaacgatt ttaggcgatg gtcgtgtcgt attaatttta aatttagaaa cattttaagg
    17281 aggaaccatg atggaacaag tatttcaagt agaacttcct gaatgggaac cgaaagaacc
    17341 gagccaagaa ggacgcgaaa aaggctctat ccgccaagta gacaatattg gcgttaactt
    17401 aatcgtccgc cttggaaaaa aagaaatgcc agtaggggat atcgccgagc taagcattgg
    17461 cgatgtcctc gaagtggaaa agaaacctgg ccacaaagtc gaaattttcc tcgatgaaaa
    17521 gaaagtcggc atcggtgaag ctattttgat ggacgagaac ttcggaatcg ttatttcaga
    17581 aatcgactaa agaaagaggg caagtgattt gaagcaagag gcttacaacg cagtgaagat
    17641 gaaagtggac caagagaaaa cggccatttt aaaggaattg caattattac tatccaaacg
    17701 ggaaaaagtc gtagaaaaat tagcgcacga aaaagaagtc tattactcaa gaacgaaaaa
    17761 agaaagactc caagtggcgg tattagccgg aagcatgcaa ctagatgcct tctcgccgag
    17821 ccgcattcaa caaatggagc gagaaattca ccaaattagc cagtacatta aaagcaatga
    17881 acaaatctta gagcaacttg aggaaaaagg gaaacaggcc aaaaaaatgt acgatgacac
    17941 acgaaaaaaa tggcaacagc ttgaaaataa aagagaagaa caaacattac gcgatttaaa
    18001 aatggtgcta ttaaagtaaa agggaggaaa acgcatgcta atcccagata atttgctaca
    18061 accactcgtc ggaaaaaaac aggtcgaacc aaaagaatcg ttagcagaag aattagtaga
    18121 actgcctttt atttcacttt taatggaaaa tagccctgcg ccgctcttaa agggagaagc
    18181 ggataacgga gaacaagcta cgctaccact aaaagaaatc gcccaaccac tcgtttcagc
    18241 caagctactc gacgatgcac cagaaacgaa actgcaagta gcaccactcg aactcaaaga
    18301 agtgaaagaa acacttgcgg caatcgccaa acaagcaatt gatcaaccca aaatagaaaa
    18361 cgccccgcaa gctgtagaaa ctccagtaac aaatacaccg aaagaaccca caaaaaatgc
    18421 cagtagggag caacaaccgc caccagaact tatcatacct acaaaagaat cacctaaact
    18481 agcagaaaac gtggccaaaa accaaccagt cctagccaaa ttacctcaag aaaaagaagt
    18541 cgtgcaactt ttcaaagcga gcattaaaga gccagtaact gccaaggaag aagttgccgt
    18601 caaaaagccc gcagaatcca gcaatatttg gcatgatacg gcgaaacaac tcacaccagc
    18661 tgccaaacct gaagtcccag tgacgttaaa acaacttgat aaaaccatca ccgaccaaat
    18721 cgaacagcta caaaaattcc aagtgaaaca aaataaagcc tttttcgcca tccagccgga
    18781 gtcactcgga aaagtcgaag ttttacttaa aaaaatgccc gataaaatat ttgtacatat
    18841 cgaatatcag gaacaaacgg cgaaacaaaa actcgaacag atggcgcaag atttgcataa
    18901 tcgtttccga gatcgcggcg tagaagttgc cgtgacaatg acagaaaaac aagcaccgaa
    18961 agagaataac caaggctcgg atggtcgaca ccaaggtgaa tctaaaaaag aaaaagaacg
    19021 cgaaaatcca catcaggaaa gagctaaaca agaagcattt gatttagagg aggagacgta
    19081 atttggacgg aattagtagt ttatcaggag ccggtcagga tacaaataat gtagtaacat
    19141 ccagcgtatc caaaaccctt ggcaaagatg acttcatgaa actattttta acaagtttac
    19201 aataccaaga cccatcgagc ccgcttgata cgaatgaaat gatgtcgcaa atggcgcaac
    19261 tttccttaat ggaacaagtt gccaatatga ccactgccgt agataagctt tctgaacaag
    19321 cgcaaaactc cgccttgcaa tccgcggtta atttcatcgg taaagatata aaaggtgttt
    19381 cgctgaacgg cgaagtaatt agtggaaaag tcgaaagcgt tcaacaaacg acaaacggcg
    19441 tcatgctgaa attaaaagat aacgatagcc tcgtgccaat gacatatgta acagaaatta
    19501 attaaaaatt tgggagtgtg aattatgaat caaactatgt atacagctat ttctgggatg
    19561 aatgcgttcc aacaagcatt atcggtaaca tcaaataata ttgccaatgc caacacgaca
    19621 ggatacaaaa aacaaagcgt cgttttcaat gatttacttt accaaaacac aatgggatct
    19681 gttgcaggcg gactttatgc tggaacaaac ccaatgagtt tcggttccgg ttcaaaaatt
    19741 ggagcgattt taaccgatta tacagcgggt tccccaacag caacgggcag aaataaagat
    19801 gcagcactac aaggtcgcgg ctttttcatc gcgggcgata atgcaggggg caatatcgtt
    19861 tacacgcgtg acgggagctt cgccgtttcc gacaacaatt atttaactac ccaacaaggg
    19921 aaatacgtaa tgggttacgc aacagacaaa aatggcaacg ttttaaacgg taatttgcaa
    19981 ccaattcaaa tcccgctaaa tagcgcaatt ccaggagaag caacaaaaaa cggtagctta
    20041 agcggtaaca ttccactaga ctggggcgaa aaagatacga tttcttccga gctttctgta
    20101 tatgataatg ctggcggaaa acataaactt caagtgaata tgaaagctgc tacaccagat
    20161 gcgagcggta atgtttccta cgaatatgaa attcaaatgg acggaaaagc attaactcct
    20221 ccagtaacag gaacacttaa ttacaatgcg cagggcgaat taacaaaccc agacgcactt
    20281 aaaaatatcc aaatcaattc cacagtaaac ggcaaacaag tcaatatggg cttaaaccta
    20341 agtggcttaa ccaactacgg aacaaaccaa gtattctcac caacttctga cggtaaaggc
    20401 gctgcgactg taaaagatta tgcagttacc gattctggct atattgcagt gagttactca
    20461 gatggtacag ttatcccagt tgcccaactt gcggtggcta ctttctccaa tgaagacggc
    20521 ttagtcaaaa tggggaacgg cgaatatgtt ccaggattat cttctggcga tgcagtatac
    20581 ggcgttgctg gccaaaatgg cgctggcgga attagtggct cctcattaga aggctcaaac
    20641 gtagacttgt cccgcgaatt cgttaactta atgacatacc aaagtggttt ccaagggaat
    20701 acaaaagtta ttcgtgtggc ggatgacgtg atgaaacaaa ttgtgaactt gattcagtag
    20761 ggagtttagc taaatgaaaa ttaatcatac tattccactc agaatcgact tcgagttagg
    20821 acgtacgaaa cagccagtcg gtagtttgct agatgtaaaa aaagggaccg tttttcggtt
    20881 agaagattca acagccaatg tggtcaaaat tacgatttct ggcaaatgca tcggttacgg
    20941 tgagattttg acaaaagacg gcaagatgtt tgtcaaaata acgaaattag gagagggaag
    21001 ttcttcatga gagctaggga gtgacaaaaa atgagcgata aattaagtca agaacaaatt
    21061 gacgccctgc tttcccaaat aagtgaaggt aaggtagttg atgaaagtac ggaaattggc
    21121 gactttgggc gctttcatcc ctatgacttt cataaaccag agaaatttgg tgcagaacac
    21181 ctcgaaagct taaagacgat tgcatccgct tttacgaaaa aaagcatgga gtttgtttcc
    21241 cagcgtatcc ggattccaat tcataccgaa gcaacccttg cagatcaagt ttcctttgcg
    21301 agtggttata tcgaaacaat gccgaacgat agctacattt tctgcattat cgacctgggt
    21361 aatccggagc tcggtcaaat tattatcgaa ctcgatttag cctatatcat ttatattcat
    21421 gaatgcttat ctggcgggaa tccaaaacga aaattgagcg agcgcagact tttatctgtt
    21481 tttgaagagc tgacgttgaa atctatttta gaaaaattct gcgaagcact caaagacagt
    21541 tttaaatcag tacatccaat ctcaccagaa atcgttaata tcgaaactaa cccagcactt
    21601 ctacgtgtca catcaccgaa cgacatgatg gcgcttgtca gtgttgatat taaatcagag
    21661 ttttggatta gtacaatgcg cattggcgtg ccgtttttct cggtggaaga gattatgaat
    21721 aagctggaaa acgtcgtgga atatacgttt gataagcggc ggaattttga tgcggaagtc
    21781 gagcaagaat tgcatcaagt cgagaaagaa gcgtgcatac gtgtaggtga aattaaaaca
    21841 acgtggaaag aactgaataa gcttgaagta ggcgacgtgc ttctgacaga aactcatata
    21901 cgtgacacac tcaaaggcta cgtcactgaa aaatggaaat ttgaatgtta tatgggaaaa
    21961 agtggtaacc aaaaagccgt taaatttatg cgtcatacag ggcggacaga gcaggagagg
    22021 tagaagtgga gcaattacta gagaaaaata tcacgcaaat ggaactagat gtgataggag
    22081 aaatcgccaa tatttcgttt ggctcagctt ctacggtctt atctgattta ctacaccaac
    22141 aagtcaccat ttcgacgcca aaagttgaga ttgttgattt atataatacg aaagacattg
    22201 atattccaca tgtcgtgtta gaagtgaatt ttcacaaagg aatcgaaatg cggaatttat
    22261 ttgttctgca atcagaagtg gctgcggcta tcgcggactt aatgatgatg ggtgatggaa
    22321 acattgatcc gaatgaagaa ctttcagaac ttcatctaag cgccgtacaa gaagcgatga
    22381 accaaatgat gggacattcc gccactgcga tgagcaatat gtttggcgaa atgattgata
    22441 ttacgacacc agacattaaa gtaatcgcgc taaaagaaca attagaagat acgaacgacc
    22501 aaacaatgat aaaagtcggc tttgacttaa ttatcggcga cttgatcaca tcgaatttaa
    22561 tgcaactcat ccctattgat aaagggcatg aacttgcaaa aagattactt ggcgacgcag
    22621 ttccagagcc agaaccagta aaagaagaaa tcagcttaac ggccgaagag ttagatgtct
    22681 ttttagaagt atgtaatatc ggcatcggtt cagcttcaac cgttctatcc aaattgctta
    22741 accgtaaagt ttccttacaa atcccaactg cacgcgtaat tgatagcaaa gagttcgagt
    22801 ttaatgaacg tccttgctta gtgacgagtg tggaatttgt cgaagggctg cgctcaagca
    22861 acacatttat cattagcaaa aatgccgcgc taattatggc agatttaatg atgatgggag
    22921 acggtttggt tcaagaagat gcagaactga cggaacttga agtcagcgca gtgcaagaat
    22981 taatgaacca gatgatgggc ttctcagcga cagcaatgtc agaaatgctc ggaacaaaaa
    23041 tcgatattag cccacctaca atggaatttt gtaatttcgg cgatacgatg attcaaaaaa
    23101 acattgaaga aggaaaaact gtcgaagtca tcttcccgct agaagtagaa ggactattaa
    23161 aaacgccaat gtaccaaatt tttaatccag cagcagcaaa agaaatggcg caattgatgc
    23221 ttgggattca ggcgaaagaa gtcgcagaga aagaagcgac gactccagca gaaataatcg
    23281 aaccagaaaa actagctgaa ccagtgcacc aagcagttat cgaagaaaaa gaaacacttt
    23341 ccgaaatgga acaaattttg gaagatattc ccgtaacgct tgaagtggta ttcggaacag
    23401 caaaagtaaa actcgaaaaa tttatctctt ggtgtgaaaa agatgtgatt atcctaaaag
    23461 agagtatgaa cgaaccactt gtcttagcgc taaatggcgt gacgattggt aaaggaattt
    23521 tagttcgcgt ggatgatcat tttggtatac aaatgacgga gttagtaagg tgaaaaatgt
    23581 gcggaaactt ggactgatga caattttatt ttggctgtgt ttttcggttc aagcatttgc
    23641 agcagatcct gaacccccga taatatcgct tgaaggcgaa cagcatgttt ttacatctgg
    23701 tgaagtgatt tcgtttcata ttgaaaatgc ggctgacttg aaaattattc tggtgaatga
    23761 acatggacag agaaagcttc tagacgagga aacgtatacg gtgacggatt gggatttgga
    23821 cgggagttac caagctgaat tttatcaagc agatgtgccg aaaccatttg ttactgtgga
    23881 agatttattt gaagtgaaac agcttgagga cgttgcgaaa gatgagacgg cgccgagttt
    23941 gaaaacgata gaaattacgc acgatgaaga tgtcttgtta acgagcgtgc tacgtgtatc
    24001 agctgattta gatgacgcgg aatctggcgt gaaacaagcg actttagttg ttcatagcga
    24061 atcgaatgaa tcagaaatcg aactcattcg caacaactat acagggaagt ttgctgcaga
    24121 aataccttta gaaaaattcc aactgggtga aaaaatcact tttcaactgc aactagttga
    24181 ttttgccgag aatgaaatca cagtagactt aggaaacact gtccaactat atcaaccaaa
    24241 agcacccctt ttaagttacg acggtaatga catcacgaac gtgcagaaaa aaatcggcca
    24301 agtcggcaag caaatcgagc taactctcga caaatataca actgaatttc cagaactaga
    24361 aacagagacc ggcaaaataa tcccactaaa atggcaaaaa acggcaactg aatggaaggg
    24421 aagtctaact ttaccgagcg aattatccgg tgaaatcatt catattcaag gaatggatca
    24481 acacctgctc gttcgcgcca ctagtgaacc ttttggcgag gttcagttag tcaacaatgc
    24541 cattttaaca ggaaccattc tttcggattt cacacttatt tcaaatcttt atattgaagt
    24601 aaacggtcaa aaattttccg tcgaacgagc gggcaaccgt ttcacaagtg cagaaataac
    24661 caccacaggc aaaatagtgc tccactggac agactgggac ggccaaattt attccaagca
    24721 aatgaatcaa gaaatcaagc ctgtaatcgc aatcccaggt aaagaaataa tcgcaccacc
    24781 accagtaata ccgaacgaaa aaacgcagat actaacatca ccagctccta agccatctgt
    24841 tgaggcacat gaaaataccc ccaaaaagca ggtgaaaaag gaaacctcaa ctaaagacaa
    24901 ctcaagcagt atcccgtttt ggattccggc gctcatgatt attggcgtta ttattttttc
    24961 gggtaataga gcaatgaaat aaaagcagaa gtgaggtgga cggaatgaaa atagatggca
    25021 ttcaagaatc tgcagaaaat cgtaatcaac tagaacggga actcattaaa caaaatccag
    25081 ttgtaaaaga aggtacgata aaagcacaaa tgaatacaga agtagccgta ccgaaaacac
    25141 cgccagtatc attctctttt aaagaattaa gtagcttaca actaaacgga acaagcgcag
    25201 caagtttaga attatatatg aaattaatga tgaacaatgc taaaaaagcg aatgatttaa
    25261 tcttttacgt gatgcgggcg ggaatcaaaa atccaactga ttctactaaa tggcaaacag
    25321 tcagaagcga gattagtagc caattaagta caattctaat gaaacaacat aattttgaag
    25381 cgtacttttc tgaaaatccc gcgaatcaaa aattattttt agccaatcaa aaaattatga
    25441 acgaaatatc ctttttgcta aaaatgttgc caaccttaac ttttgaaaca acaggaaaat
    25501 acgacttctt gcgcatgatg caaatagctt ctggcaatat ggagactgga atccaaatga
    25561 tgcgcgaatt ccaggggcat atcgaacatg cgacaagact agacccgatt gttgacgcca
    25621 gacaagaaac gaactggatg attaaagtgt tacgcgaatt tggcaatatg ttccaatcgc
    25681 gccacttatt accatatgaa ttacaggcag aaaacatcaa tatttggaag ttgggtagcg
    25741 aatacttaaa actaatgaac caacttttac cgcaaattgg cgcatttcca aatgggaata
    25801 tcaaaatttt tcaccaacaa gcgaccaagc cattaacgga acttttccaa gaactgcaac
    25861 gcttggcaga cggacaaatg acgcaaggtg ggatcgccgt tattttagac cggatgcaag
    25921 gccaacttac acgacttgca caactgtttc aaaaaatgga aatcgaagca ggtttcaccg
    25981 atacagaacg aattttaggt agtgtggacg ccgaattcgc tagtgatatg acaaaaatga
    26041 tgctactcgc acaacaagaa atgtcatttt ttgatttatt agtaaaagat ttccgaagtg
    26101 tttctaaaca accaatattt ttcatgatag ttgctatatt tattatttta ttattaatta
    26161 ttttatttta aaaaagatat tttttgaaaa aatatatact ttttcaggtt gtttcagtat
    26221 aattaaatag aaaaataagg tttagaaagc gaaaatgagt ttttcggggg aaaaaggatg
    26281 aataatgttt caattggcca aatttcgcag tccaaacaga cgaatgtagt taggggaatg
    26341 caagaattaa atcaaacaca acagctttat tttgaacaaa tgaaggcaaa tggcaagaaa
    26401 caaactcctt ccctgactga aattaacgaa ctaatcacga atgtcacaga taaaaagtca
    26461 ctcgttgaaa tggatatgac ggtagataat gttttgagct ataaaaaagc agtccaaaca
    26521 tttttgaatt tttatgtgaa taatgtgatg gattacgaca atatcgaaag ccgtcatcca
    26581 aaatacgggt tttcgcaaaa aatgacgatt ttaaagcaag tagaaaaaca aaccaatgaa
    26641 ctcgatgatg taatgaattt aattgataca aaaactggac atttagacat gctaaaccgt
    26701 attggtgaga ttactggcat gattctcgat gtcgtattgt aggtgatggg aatgcaaaac
    26761 gaattaatca atcaattaga aattttaatc gaaaaaaatg tcaaagcgac cgatgcagca
    26821 attttactcg gaaaattagt gcaagaagag aactggattg atgcagaaga acgccaacta
    26881 ggactacagc gcgaacttgc cgctttgcaa aacgaatatc aagctttaaa aacaatcatt
    26941 ggcgaagata atacgcttag aacgctccaa aatacttgga cacctgcgga aaatgccatt
    27001 atagatgaac ggaaaaaaat gctacttgaa aaagaaaacc ttttacgagt aagtgttacg
    27061 gaaaaccaaa ttagaacaga aatgcaattg gctttttcgg aacatatggt ggatgttatt
    27121 acgggacatc acgcggaaac acaagcagaa aataatatga tgataaacga gactttttaa
    27181 gtaaacggag ggattttttg tgcgtttaag tgattttaat acgtcattat cgggcatgtc
    27241 agcggcgcaa atcgctaata tggtcgctca gcaaaatatt agtaatatga atacgccagg
    27301 atacataaga caagctgtgg atcagacggc ggtttacggt gacggtggtc tgcttggtgg
    27361 gaaacaaaca ggctacggag tcaaagtgac agacattaaa cgtctaacaa atacagcact
    27421 tacgacacaa tacaataatc aaatcgccaa acaatccgct tcgttatatc aaagtggggc
    27481 gctcggtcaa gcacttaatt tatttggtac tccagggaaa aatacaccaa gtgataattt
    27541 agataatttc ttcaccgctt gggcagcatt agcgaaaaat cctgaccaag caacgaatac
    27601 aacggcactt ttatccagta tgtcgatttt tacggatcaa ttaaaccaac ttcattcggg
    27661 cttaaaagaa ttagaaacaa ccattgcagc agatacagat gccgcgattc aagacttaaa
    27721 ttcattaatt aaaaaattag gcagtatcaa taaagcaatc ggaaatgcag gctccaaccc
    27781 accgaacgat ttgctgaacc aacgcgatca actacttagt acgatggctg gctatgctgg
    27841 gatttccgtg agcgcccatc cgaataatcc agatgtgtac gatgtgacaa ttggcggacg
    27901 tcttgttgtc caaggtgatg aaacgaccga aatcacatca acgcgaaccg cgactggctt
    27961 tgaattttcc gtagacggtc aaaaactcaa catgccagaa ggttccatca tcgcttccgt
    28021 tcgtgttaac caaaatgaaa ttaaatcgta ccaagaaaaa atcgaaactt tttcgaacag
    28081 cctagcaaaa gcattagatg atattcaagt caaaaacgtc aataaaacaa tggacgattt
    28141 gcaaaaaatc aatgatgcgc tcaaagcgaa tccgaacgac gaaaaactac tgagcaatcg
    28201 cgatgaactt ttgcgtcaat tagaaaaatt ccctggtgtg actcgttctg gtgatacgct
    28261 gacgattggc ggagttgacc acgcgattga cacgcttggc acgagtacat atgtaaccga
    28321 tgtgaatgat ttttccattc caattttcac ccaaagctct ggcaaatgga tcctgaatcc
    28381 tgcaatcaca agtaacgctg ataacaagcc gtttctagga gttatcgcgg cggatatcgc
    28441 ttccttgaaa acagacaaaa acattcaagg aacaactttc ccgagtttca tggacggaat
    28501 cattaccgaa gtggcgacgg acgctagtaa aagtagcgca acttctacgg cagacacgca
    28561 agctttaaat tctctttctg aatcaaaatc atctcttgaa ggagttaata ttgacgagga
    28621 aatgacaaat atcatgcaat accaaagtta ttatgtggcc aatacgaaag ccatgaacac
    28681 agtgaacgat atgatgaaag ctctcttagc catgttataa ggaggaaaat aatgcgaatt
    28741 tcaacgaatc aacaagcaaa ttcaataatt aatcagctga ataatgtctc aggaaacctt
    28801 gcaaaatacc aattacaagt atcttctggg aaaaagtatg aatcgatgag cgaaaatcct
    28861 ggtgcaacag cgcaaatttt atcctataat catgtgctta gtcagctaaa tcgcgaaaaa
    28921 acggacgtaa ccgaagcaaa atcattatta aatacggctg aaacatccct ttcatccatg
    28981 tctacatcga tgaaccgggt aaatgcttta gtcttgcaag cgattaacgg cacgagcgat
    29041 aaagacaata tgtcgcaatc agccgaagaa atcaaaggtt tactggatgt tcttatttct
    29101 gtcgctaact cagaagacga tggcagatat gtttttagtg gttctagcac gagcgtgaag
    29161 ccatttacaa cagataaaac cactggagaa atcatctata acggaacaac agaaaataaa
    29221 aaattccgcg taacggacac attagaagta gaagttttcc atgatggtag tgcgatgacg
    29281 gatgtgttta acaacattca aaaaatcgtt gacgcaatga aaactggcga taaggatgct
    29341 ttgtctgcct tgcaagaaac aaacagcaag aatattgaaa tcatcaccaa ttccatgaca
    29401 aatatcggcg gacagaaaaa cggcgtaaca gcctatgata acgtactttc tagcaaaatt
    29461 gtcgactttt ccgaacgtaa atccaatgtc gaagaagtca atatgccaga agctgtaagt
    29521 aatctaaata aaacatcgat tgcataccaa gccgcactac aatccagtgt gatggtacaa
    29581 aaattaagca ttctaaatta tatgtgaggt gagaccaagt gggaagttcg attgcaagca
    29641 gtttaatgga cccaacgcaa tactattcgc aatttatcag tcttcaaaaa gctagtttgg
    29701 aaaaagcgaa aacgccttat caaaaccaaa tttccagcta ccaatcacgg attgatcttt
    29761 atgctagttt gaaaaatgct ttatctgagt cgctgaaaac gatgagctct ttcacgactt
    29821 atgaaagtaa aaccaaactc gcgacttcat ccaacgaaac gagttttact gtttcatcaa
    29881 cgagcagttc cgtcaacggc agttattcta tcgaagtcca aaacttggcg accgcagaca
    29941 cttacaataa agcagtacct gatattgagg caaaaatcgg tgtaagcggg acaatcaaaa
    30001 tcaatggcaa agaaattaaa gttgatgcag atagctcaat gaaaaatgtg atgaactcca
    30061 tcaatagcgc cggagctaag gtgaatatct acacgctagg cgaaaacatg gtcgtaactt
    30121 cttcaacaac cggtgtcgaa aacagtatta aatttgaagg cgattcggct gttctcgatg
    30181 cacttggatt agtacaaaat tccccagacc atttagctgc agaggacgcc aaactcagaa
    30241 tcaacggagc gaccgttaca agtgcaacaa acaaggtaac caactacatc ccaggcgtga
    30301 ccatcaacct caaaaaagaa acaactggcg ctgaaaaatt aaccatccaa gaccaaagcg
    30361 atgaaaaagc agccagcatg atcaccagtt ttgtaaatac atacaatgca ctaacaagca
    30421 caatgaaaac ctacacggga aaaggaacga ttttacaagc atctgctgtc gacctcgaag
    30481 caaatcgcgc cctaaacaac gtattccaac ataaaaaaga tgggaataca ttattcgatt
    30541 ttggaataag tgtcgacaaa gaaggcgttt taaaagtcga tgaaactgca atgaaaaaaa
    30601 tggtagctga agacccaacc gccgtcgaaa gatttttctt tggcattggc ggaattggcg
    30661 atgaactgta tcaatctttg aacaaaacat ttggctcgac aggctttatc agtgatgaaa
    30721 cgacctcgat gacgaatgaa atcaataaat taaacctcaa gttaaccgat attactagcc
    30781 gaaatgacac gttattaacg aatattacgg atcaatacaa caaatggctt gaaatgatgc
    30841 aagctatgca aagcgacgcc atgacgctag acgccctcat cgatggcatg aacagttcta
    30901 ataaataaaa atggtaggtg aaaaaaatgc aagcttggaa acgatacacg caaaatgaat
    30961 taaatacgag caatcccatt aaaaacacca tttatatata cgaacgttgt attattgaat
    31021 ttaaaaaatt ggacaaagca ctcgaacaac tacatttttc cgaagccgat cttattcttg
    31081 ataaaatgga aaaaatcttt gaagaattaa aattacaatt aaatccagaa gccgggcaag
    31141 aactttacga taacattttc ggtttatatg aatggatttc tgaacaaatt cgccaaatgc
    31201 aactactaaa acaacccgtt aatattgata ctatcattca tgttatcacg cagcttaaag
    31261 aaggctacga gggagtgatg aaacatgaat caagcaaaga cacatttggt tgagttaaaa
    31321 gcactgtttc actcgacggg gcaattaaac gttaccctcg aagaatacca agcaaaacta
    31381 aatgaactac taaaaagcac cgaacattta ccaaaagata caaaagaagc cattttaaaa
    31441 gaaacaaggg aagttataaa taaaggtatt cttttcaccc aaaaacaatt agaatccact
    31501 gaaaatgcct tttctgaaaa taaaagtcgc aatgctgcta acttgaatta tgcgaaattt
    31561 ttctaaaaga aagaaggaaa tgacaagtgg aaaattatac cacgcatatt ggcaactact
    31621 tgaattatct tcaaacagcc aaccaagtag tttcaaataa tatcgccaat gccaatacgc
    31681 ccaattttaa agcaagtgaa gcgagttttg aggaatcatt tggctcaagt ttgcgcgcat
    31741 ctggtcagaa tagcaccgag tcggccggca acctaacgaa aacaaacaca aaacatttag
    31801 ctggaaccga tatagacgaa acaaatgcaa aagtaacgac caagagcggc tccatcaacg
    31861 aagacggcaa caatgtcaac gtcacttctg aaatgattag cttaacaaaa aataaccaaa
    31921 tgtacgcgct cgctatcagt gcactcaact ataattcatc catcaacaca gcagcccgtg
    31981 gaaagtaagg tgataaacca tgtttgaagg aataaacaca agtggctccg cgttaaatgc
    32041 tgcgaaacaa tggatggaag taagctccaa taatatcgcg aacgccgatt caagcgccgc
    32101 acctggcgag acacctttcc ttagaaaacg cgtcgtatta tccgaaatca caccatttga
    32161 aacagctcta actggaacaa aaggtgttaa agtaagcgaa atatcgagcg acacaggaag
    32221 cgtcaaacgt gtctatgatc caactcatcc taacgcaaat gaagcgggtt acgtcaatta
    32281 cgcgaatgtt gatatgacag cagaaatgac caatttaatg gtcggacaaa aaatgtacgc
    32341 ggcaaacact tccgccttac aagcaaatga aaaaatgatg gaaaaagatt tagaaattgg
    32401 caaagtataa aggagtgttt taagaaatgg caattgaaag tattaatgca gcaagtgtct
    32461 tacctaaagt aacgcttggt gaaaccgcga aaacagacaa tgcgacaggt gccggaaata
    32521 ccttcacgca aatgctggat agtatgagtg atacacaatc aaacgcgcaa acttccgtat
    32581 cgaacctttt aacaacaggc gaaggaaatg cgagtgatgt actcattcaa atgaaaaaag
    32641 cagaatcaga aatgaaaact gctgcggtca ttcgtgataa tgtaatcgaa agctacaaac
    32701 agcttttaaa tatgcaagtg tagcggttag actagtcggg ggagttttag tcaatcgtcc
    32761 acacgagaaa aatggagcga agtttttaag atggcaaaaa taaaaacaat gtattcgaaa
    32821 ttgaagaatt ggcacaaagg cgcgatttta gtcggccttt ttgtcgtagt cacggtgtta
    32881 ttactctaca tgaacacgcc caaaacagaa gttactcttt ataaaaatct atccgaaaca
    32941 agccaacaac aagtcaccga tcaattagcc aaaatgggcg ttgattatac cgtcgacaaa
    33001 agcggtaaca ttttagtcga tgaaaaagtg gagacactcg ttcgtgacaa atttgcggac
    33061 ctaggtattc catacacagg ccaagatggc aatgacattc tactaaacag ctcacttgga
    33121 gccagtgaag aagataaaaa aatgcaagaa aaagttggta cgaaagtcaa tttagaaaaa
    33181 gaaatcgttc aaagctatgg aacaaccatc gatagcgcct ccgtgcagct aactttacca
    33241 gaatcaagtt cgatttttga agaagcaagc caaaaaggaa cagccgcagt aacactcaaa
    33301 accaaaaaca atcaaacact aacaagcgaa caagttctcg gcattcagcg caccgtcagc
    33361 gcagccgtac caaatgttgc tagtgatgac gtagcgatta tcgatacgaa aaatggtgtt
    33421 atctctgaag cagacacatc caaagaagaa ggcagttctg cttataaaaa tgaagtcgat
    33481 atccaaaatg cgattggaaa aaatgtgaaa acagatatcg aagggacact ttccagcatt
    33541 tttgccctag ataatttccg cgtgaataca aatgtctcgg ttaattttga cgaaatcaaa
    33601 caaaatacgg aacattatcc aaacgacgga aaagtacgta gcaaccaaaa agacacatca
    33661 acagacacat caaaaggttc cgcgaatacg acggaatcag gaaccgcctc aaacgctgac
    33721 gtaccaaatt acacggaaca aaatggtgat gatacgaaca cctatacaag cgaaaaatca
    33781 agtgaaacaa cgaattatga actagactcc accatccaag aaatcaaaaa acacccagcc
    33841 ctagcaaaga caaatgtcgt tgtctgggtt gatcaaaatg ctttaaataa aaatggtgtt
    33901 gacatggccg aattcacaaa agcaattgga gtttcagctg gattaacgcc taatatgaca
    33961 accgaagaag caggcgcaga cggagaagca gcagccgcac caacattcga aggtactttc
    34021 caaaatggcg atgttaccat catgccgatc cagttcttag acaacgccac gccagcagaa
    34081 aaagatacaa cagaaaaagc agcaccagca agcaaagcct ggatttggtg gcttgcagga
    34141 agtttactct tcgccatcat tgcagctgga attatcgcct acattatctt ccttaaacgt
    34201 aaagaacaac tagaagaagc attagaacca gaagaaaaag actacattcc agcggaagaa
    34261 gcaatcatca acccagaaga acatccagat ttcaacttcc aaacagatgc attcgattta
    34321 tcagaaccag aattaaaagc ccgcaaagaa agcttgaaaa ataaactcgg tgaaatggcc
    34381 aaagaagacc cagggcgcgc cgcagcagtc atccaaaaat ggctcaatga aaggcaggaa
    34441 taacaatggc agaaacactc aaagaaacct tagaagaaac aaatgctgaa ctagaaactg
    34501 tcgaagtaga agaaacggaa gaaaaaacaa ctacttcagc agattcaggt atttcaagac
    34561 gtgaaaaagc cgcacttatt atttggagcc tcgacgaaca aatcgcgacc gaagtggtag
    34621 atttgctccc tgacgcatcc aaacaacgcc ttgcacgtga aatggccaaa atgaaagaaa
    34681 tggacggcgg cgcagtagaa gaagcaacta gagaattttt aggggaatta gaacttcttt
    34741 caggaggaat tgctaaactc gaccgcgaac acttacaacg cttgttccca gacatgacga
    34801 cggaagaact aaatcaactc atttacgggg tagaagcaga atcacgtatc ggcgaaaccg
    34861 cgctagatat tttacgagaa attgatgatg ttgactcctt gtttacaatt attagcgacg
    34921 aatcgccaca aaccatcgcg atgatagctt catacatgaa accagaagaa gcatcgaaac
    34981 tactagcctt actaccggaa gaaaaaatga ttaacactgt tattggtatc gcgagcctag
    35041 aacaattcga tagcgaagtc atgcaaaacg tttctaattt actaagaatt aagcttgata
    35101 ccatgtcgaa tagctcactg aacaaaacag atggcataaa aaatgtcgca aatatcttaa
    35161 acaatgttac ccgaggttta gaacgtacaa ttttcgaaca tctcgacgcc gaacaagccg
    35221 aactttccga acgcatcaaa gagaaaatgt ttatgtttga agatattatt ctacttgata
    35281 acatgacctt gcaacaagtg ttggcagaaa ttcaagacaa caataaaatc gctcgagcac
    35341 tcaaaaacga aaaagaagag ctcaaagaaa aaattctatc ttgcgtatcg aaaaaccgtc
    35401 gcgatatgat taccgaagaa ttagaagttc ttggcccaat cagactttct gacgtcgagc
    35461 aagcccaaca agatatcgcc aatgtcgtta aaaatctgga aaaagatggc aaaatagtta
    35521 tccaacgggg ggaacaggat gtccttatct aatccgcgaa tcccaaaagg taaagtcact
    35581 ttatccgacg tgaaaatgga actgttttat ttggatgata tagaagaaac agaagaagtc
    35641 gagtcaccct actcgaaaga acttgaacaa ctagaaagtc atcaaaaaga actggaaaaa
    35701 cacctatctg ccatcgaaat cgaacagcaa aaattagcta acgaaaaagc agcacttcaa
    35761 gctgaacgcc aagccattga agaattaaaa cgcgaagctg aaacagaaat cgaagcaaac
    35821 aaacaagctt ttgaaaaaga aaaaacacaa atgtatctaa ctatcaccga tttcctttgg
    35881 gatgaaagta tcgatcttgc agaaagaatc gtccaccaag caatcgacac gcgccaaatc
    35941 gaagtcttac caatgctaac tgaagtcatt caaaaactcc cagttgcttt cgacaaacta
    36001 aacgtcacta cccatccaga gaccttaaaa gctctaaaag aagaaaacac aggcacaaaa
    36061 tacgactggc ttttagaaaa tatccattgg aacttcgata tgcgactcga ttacggcgaa
    36121 tttactgtag aagaagaaaa ggaatacttc gactaccgca tcaccgaaat tttccaaaca
    36181 cttcataaac aaaacgccga acggaaaatt ctaggaggcg ataaaccgtg aactggtcgc
    36241 caaaaaccga agcttggcaa gaactaaaaa acaccgttcc atacatccaa aaaggaaaaa
    36301 ttcacacagt ccaagaacaa gtctatattt ccaaaggccc tcaagtgaaa attggtgaca
    36361 ctgtcatggt cggtgaaaat aaagtgctct gcgaagtaat ttctattgaa aaagaaaaca
    36421 acatgctact cccgtttaat caaagcgaca aagtggcata cggtgattgg gtgtacgtaa
    36481 cggatacgaa aattacaatc ccggcagacg aatacctcct tggaaaagta ctcaacgcat
    36541 ccggcgatat tttaaacgaa gaagctggag tggctaaatt taaacaaaaa atgccgcttg
    36601 aagctccacc aattcatgct tttagtcgag cagaaatcac tgatacgctc gaaacaggca
    36661 tcaaagcaat tgacgggatg ttaacgattg gaatcggtca aaaaattggt attttcgccg
    36721 gatcgggtgt tggtaaatct actttacttg gaatgattgc tcgtaacgcc aaagcagaca
    36781 ttaatgtgat cggcttagtc ggcgagcgcg gccgtgaagt aaaagatttc ttgcgtaagg
    36841 atcttggaga agacggactg cgcaaaagcg tgattgttgc tgctacctcg gacgaaagcc
    36901 atcttatgca actacgcgcc gccaaactag ccacttctat tgccgagcat ttccgcgacc
    36961 aaggaaaaac cgtccttcta atgatggatt ctgtcactcg ttttgctgat gcaagaagaa
    37021 gcgtcgatat cgccgtcaaa gacttaccaa tcggcggcaa aaccttgcta atggaatcat
    37081 atatgaagaa attgctagaa cgttcaggta aaacgcaaaa cggctcgatc actggtattt
    37141 atacagtgct tgttgatgga gatgatatga atggtccagt ccccgatcta gcgcggggga
    37201 ttttagatgg acatatcgtt ctcacacgtg aactggccac caaaaaccac tatcctgcca
    37261 ttgatgtcct cggctccgtt agtcgggtaa tggaagaaat tgttccagaa agccagtgga
    37321 aaacagcttc gaaaattcgc gaatggatga gtatttatca agaaaatgaa ctatatttca
    37381 aacttggtac aatcgaacag acgagcgaca atgcggcgat ttttacaagt aaagaaaagt
    37441 cttatttcat ccatcaattt ttaaaacagt tgcgggatga aagtgtcacg cttgaagaaa
    37501 cgagtaagtt gatggaaacg ttagtataac aaaggagtgc cgtggatgaa tccagtagaa
    37561 caagtaataa gtgctagaca agccgagttt caaagcgcgt tcgaagcagc gaaacaatcg
    37621 gctaccactt ttgaaacaaa attaaacgaa cgcttaaatg agaccacaac tgccaaaaca
    37681 actagtgtac taactgtcac agatgccgaa cttacgcgcg ctcgagaagc atatgaagca
    37741 ttaatcaatc aatccgacac caattctgcc gcgtctgctt caagcacaac aaccgagact
    37801 cccactacat caacaggcga atcaacaaac tggaacaact accaaatcaa accaatcagt
    37861 gcggaaaatg aaggaaaata tagtgattta atcaaaactt cggccgcaaa atatggcgtt
    37921 ccagaagcac tcatcaaacg agtcatccaa gtagaatcca attttaaccc gaacgttgta
    37981 tcaagtgctg gtgcaacagg tttaatgcag ttgatgtacg gctcgaatcg tacagaccca
    38041 gcaactaata tcgacgctgg aacaaaacaa ttggcaggtt atattaaaaa atatgatggc
    38101 gatctcaaac tggcattagc agcttataat gctgggccag gaaatgtccg caaatatggc
    38161 ggcgtaccac cattcaaaga aacacaaaac tatttaacga aaattattgg gtaagggaga
    38221 ataaaccatg ggaaactggc aacaaaagtg ggaatcatgg cgcgatatga ctgtagcaat
    38281 gcaacaagaa atcaaaattg aagcagccga aaaagtgact tcctacataa aaaatgacca
    38341 atttgaagaa gcaattaacg tcatcagaca aaccgaaaat ctcctaaacg aactggattt
    38401 tgaaactaaa atgaatcgtg tcgaagaaca gctccaagca ttcacatccg accaagaagc
    38461 agctaaatca tttgaagcaa gccagcttca aaacctagaa aaaccaagca caaaagtaag
    38521 cttcgaccta tcacatgtaa aatcagaagc gatcaatcag ttcaccaaac gcgatttcaa
    38581 cctagtagac tcaaatgata cccacatgca attcctcaaa ggcaatcgaa atttttatat
    38641 ggacattttc aatcccgaag aaagcgaaga ataccactac gctaatcttg atgagaaatg
    38701 ccaatacaaa aacatcggct tcatttgcca aaacgatgca gcagctgaaa tcgcaacaaa
    38761 attaacaaac gaatggctcg aaactttaga agctccgaaa aagaaatttt taacggtcaa
    38821 cattgctaat ttaaacgcga tgaaacaaaa tcaagaagta ctttttcaat agaaaaaacc
    38881 tgttctcgcc aaagagagca ggttttttta tacaaacagg ttgacaacta acctactttg
    38941 tattactata tacttgtacc tagtaacaac tagtagagga gtgaattcaa gtgaaaggac
    39001 taaccgagtt actcaaaggt agtttagaag gaatgatttt ggagcggatt tctagaggag
    39061 aaacatacgg ctacgaaatc accaaatacc tcaatgacct aggctttgat gaaatcgtcg
    39121 aaggaaccgt ctacaccatt ctcgttcgtc tggagaaaaa aggattagtc gagatagaaa
    39181 agaaaaaatc agaattaggt ccaccacgaa aattttacac attgagccca gctggtgaag
    39241 aagaactagc tattttttgg aagcgttggg attttattca aggaaaaatc atgcaggtta
    39301 aaggagggca agcgtaatgt ttaattggta caaaaaatac cgcgaagaaa aacgagatta
    39361 caaacagtac aaaaaacgaa tagccgcttt gccagaagat tacaaaaccg caatgaaagc
    39421 tatcgaaacc tatttatgga actttgcaaa aggcgctggg atgtttgaaa tcctaaagaa
    39481 tgtactcgag atgttcgaaa acgccgcagc cgacaaccta gaattaaaag ccgttgtagg
    39541 agatgaccta gcggaattcg ccgacaactt actaagtgaa tttccggaag aaacatggat
    39601 ggataaacaa cgtcagaaat tgcgagattc gattaaataa aaaacagaaa gcctctcaaa
    39661 aaaatgagag actttctgtt ttttatttgc gtttcttaac aacctcaata aattcatcta
    39721 acgtttcgtg ggtttttatt tgctgattac acacatcact atcgtagcaa atgtaattac
    39781 catttgtcgt ataaatgccg tcactcgaag atttcgtttt cgccataaag agcgatactt
    39841 tggaatgcga gtgacaaatc gaacaaacac ccttttgaat ctctgtcgaa atagttcctt
    39901 gtacgccgac caaatttccg tcctcgtaag tcacgatata tttacgttgc tgagcgatat
    39961 cattccagcc gtaaaaagta tagtcgcgca aatctagttt agaccaggcg ggaattttta
    40021 attttttcgt tttcgcaaaa agttttttaa gtttcacatc actaggtggc gcgaaaggaa
    40081 tcacataggc ttttaaccca tctaaaaacg gctctgcttc tttggttgaa gtaatcgcat
    40141 ggagctcgct aaacagttcc ttatgctcct ctagcacgct ttccgggaat agttcattga
    40201 ttttctcctc tgttaacgat tttaacgcct tcaaagtcga agtatcattg gcggaccggt
    40261 atgcgcgtga aacattggct aattgatttt tgataaaatt atattggtat ggctcgataa
    40321 actctttcat tataattctc ctttaatagt ttaatgttgg ttaaactagc tgaaggattg
    40381 aagagtttat ttcactctta ctttctaaac aatcctaaag ccattgttag aaagtcgaga
    40441 gcagtgcaat tttgtttgca tctctttgat caccaccttg ccttcattat aagcacttct
    40501 gaatagttcg tcaattctct tttatgaata ctcttttaaa aacagggtaa acgaaaacta
    40561 ttggacatta gagaaaacat ccatgggagg agaaagtaaa atgaaaaaag taaaagcaag
    40621 tgaaacactc gtacaaacat taaaaaattg ggggattgac cacgtatatg gtttacctgg
    40681 tgattcgatt gatacagtag ttgatgcctt acgaaaagaa caagaagcaa tcgaatttat
    40741 tcacgttcgg cacgaagaag tggcgacact agccgcagca gcatatacca aattaacagg
    40801 caaaattggt gtcgcattat ctatcggcgg ccccggagca attcatcttc taaacggcat
    40861 gtatgatgca aaaatggatc atgtgccaat gctcgtactc gctgggcaag tgacaaccga
    40921 cgtcttaaac accggctttt tccaagaagt caatttacca gcgatttttg aagatgttgc
    40981 cgtgtataat aaacaaattg ataatgccga aacactcgcg gatgtggttg atgaagcaat
    41041 ccgcaccgct tataaagaaa aaggcgtcgc tgtcctaacg attccaaatg atatcccgtc
    41101 acaagtaatt aaagcgagcc ttgaagcaaa aacagtcaaa ttcgaacaag aaaatccaaa
    41161 actagatgaa gcggcaatac aggaagccgt agcacggatt gaaaaagcgg aaaaaccagt
    41221 tatcttagct ggattaggga ctaaacacgc tggaccagaa ctaatcgcct tctcagaaaa
    41281 attgaaaatc ccgattattc attccttacc agcaaaaacc attgttccag ataaccatcc
    41341 aaatgcactc ggaaaccttg gtaaaatcgg aaccaaacca gcatatgaag ctatgcaaga
    41401 aactgactta ctattaatgt tcgggaatga ttacccttat agcgattatt taccaaaaaa
    41461 agccgactgc atccaaatcg atattgaccc agccaaaatc agcaaacgtt tccctgcaac
    41521 agttggttta gttggcgatg ccgcagaaat catcggtaat ttaaccgcga aaaccgcacc
    41581 tgtagaagag cgtaaattcc ttcaagcatg ccaagaaaac atgcaagaat ggtggaaatg
    41641 gttagaagaa gacatcgcac aaacaaccga tccaatcgcc ccagaagtcg taatggcgaa
    41701 catccaaaaa atcgctgata aagatgccat tttctctatc gacgtaggaa ctgcaactgt
    41761 ttggagcact cgttatttac atttaacccc acaaaatgac tttatcgttt ccgcgtggct
    41821 tggtactatg ggctgcggtt tacctggagc tatcgctgcc aaaaaagcat tcccagaccg
    41881 ccaagcaatc gccatcgtcg gtgatggagg cttttccatg gtcatgcaag atttcgtcac
    41941 tgcagtaggt ttaaacatgc caatgattgt cgtcgtgtta aacaaccaac aactttcatt
    42001 cattaaatat gaacaacaat cagctggtga actaaactac gccatcgatc taccagacat
    42061 caattacgca aaattcgccg aaagttgtgg aggaattggt ttccgagtag aaaaaatggc
    42121 ggacctagaa gctgctttcg gaaacgctaa actagcaact aagccagtaa tcatcgacgt
    42181 ttccgtggac agtgcagccg ctccactacc tggtaaaatc gtgatggacg aagcgctcgg
    42241 ttatactaaa ttcgaaatcc aatcagtctt agaagaccat cgtttcgcaa aaatgccacc
    42301 acttaaaacc attttacgca gatttttata aaaaacaaat aaaaaaataa cattatcacc
    42361 cgtttcatgc cgattctcgc taattattat aacgtttttt attaaaacta attattttac
    42421 aataaaatat ggagtttttt taaaaaatat
//
LOCUS       DASEAA010000005        40221 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.005, whole genome shotgun sequence.
ACCESSION   DASEAA010000005 DASEAA010000000
VERSION     DASEAA010000005.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 40221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 40221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..40221
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.005"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            237..1073
                     /locus_tag="U0342_000230"
     CDS             237..1073
                     /locus_tag="U0342_000230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM2421612.1"
                     /translation="MRIERILNNNIVSAIDEDAQELLILGKGLGFNSKVGDPINESKI
                     EKVFELKDDTMDKFKMIVNEIPIQFLEVTDDIVKLFKMKTTKDISDVIYISLSDHLYF
                     ATQRLQENVVIENPLSWEVKRFYQEEYAVAKEAAKMVESKLEIELPDAEISNIALHFV
                     NAEVDSDMNDVTHIMQLIQEIISIIKYHFNIEFDEESTNYYRFMTHLKFFCQRVIIGE
                     TIDEMDEFLYQTVKKSRGAIFECIDKIGVFLEKNYQFTMSHSEQFYLALHIERLLKRK
                     NN"
     gene            1173..3026
                     /locus_tag="U0342_000231"
     CDS             1173..3026
                     /locus_tag="U0342_000231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM2421613.1"
                     /translation="MDYNQLAKEILQAVGGKNNVNEVYHCITRLRFQLKDQSKVNEKQ
                     LKDLDKVMGTNVAGNQFQVIIGNDVPKVFDALVTENPAWKNKETTNKTTRQKGIKGFF
                     SNIFDALSGVFAPILPAIAGAGLIKGFMALFVSLGWLATDTETYRILLAIGDGVFYFL
                     PILVAVSAARYFKANMFVALGIGAALLYPDLTALLSAGTTPHFIGLPVTPVTYAYSVI
                     PILLAIWIMSYVEKWVDRIIPTSLKLLFVPLITMFIVVPLTLVVIGPLGTFVGDGVSG
                     GINWLLNNGGVIGGILIGGAMAIIVMTGMHYAIVPFVISNLAKYGYDKFLPLTYISNM
                     SQAGATFGVFFRAKDKKLKSLAFSTGLTALMGVTEPAMYGINVVYKRPFMASLIGGAA
                     GGGFAMMFGVKAYVLTGNGGIPGLPGLVGDTFVYALIAMALAFIVALIFSYIFGIDEQ
                     IVEATPVAEKIAAGTEVLQAPVTGELVKMSQVNDTTFADEIMGKSIAIKPNEGKLYAP
                     ANGTIISLFKTKHAIAMQSDNGAEILLHVGIDTVKLDGNYFTAHVATGDVVEQGDLLV
                     TFDMEKIAEKYDTTTMMVITNTNEYALVEAKDSGTVTKGNQVMELRSEQNE"
     gene            3019..4467
                     /locus_tag="U0342_000232"
     CDS             3019..4467
                     /locus_tag="U0342_000232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="family 1 glycosylhydrolase"
                     /protein_id="HEM2421614.1"
                     /translation="MSNTKFPDGFMWGGATAANQFEGGYNLGGKGLACADLFTGGTHT
                     EPRRITAQLEESTFYPSHEAVDFYHHYKEDIKLMAEAGFKVFRMSINWTRIFPTGKEA
                     EPNEEGLQFYEDVFKELKKYQIEPLVTIAHFDIPLALTNEVNGWASRDLIDYYLHYCE
                     VIFKRYKHLVKHWLTFNEINTATMEIGNYLSLGIRHAEGDFLHQKDDPTVRYQALHHQ
                     FVASAKAVKLGHSINPEFMIGCMIAYMPRYPRTCEPTDVLLAKQTEAMHSHFCGDVHV
                     KGYYPFYAKTFFKDNGIELEFDPEDEQVLREGTVDFYTFSYYLTLCASNDPAYKNSGK
                     SVIGGAENPYLKTNDWGMQTDPVGLRIALNDLYTRYNIPLMVVENGLGAFDKLEDDGT
                     INDPYRIDYFKEHILQMHKAIQDGVDLIGFTIWGCIDLVSASTGEMAKRYGIIYVDKY
                     DDGTGDYSRKKKASYYWYKDVISSNGEIGLRE"
     gene            complement(4507..6837)
                     /gene="gshAB"
                     /locus_tag="U0342_000233"
     CDS             complement(4507..6837)
                     /gene="gshAB"
                     /locus_tag="U0342_000233"
                     /EC_number="6.3.2.2"
                     /EC_number="6.3.2.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate--cysteine ligase
                     GshA/glutathione synthetase GshB"
                     /protein_id="HEM2421615.1"
                     /translation="MIKLDMTMLDSFKEDPKLRKLLFSGHFGLEKENIRVTSDGKLAL
                     TPHPAIFGPKEDNPYIKTDFSESQIEMITPVTDSIDSVYEWLENLHNIVSLRSENELL
                     WPSSNPPILPAEEDIPIAEYKTPDSPDRKYREHLAKGYGKKIQLLSGIHYNFSFPEAL
                     IDGLYDKISLPEESKQDFKNRLYLKVAKYFMKNRWLLIYLTGASPVYLADFSKTKHDE
                     SLPDGSSALRDGISLRNSNAGYKNKEALYVDYNSFDAYISSISNYIEAGKIESMREFY
                     NPIRLKNAHTDQTVESLAEHGVEYLEIRSIDLNPLESNGISKDELAFIHLFLIKGLLS
                     EDRELCSNNQQLADENENNIALNGLAQPALKNCDNEEISVVEAGLLELNKMSDFIQSL
                     RPEDTKLQAIIEKQKERLLHPEKTIAAQVKQQVTKEGYVDFHLNQAKTYMEETEALAY
                     KLIGAEDMELSTQIIWKDAIARGIKVDVLDRAENFLRFQKGDHVEYVKQASKTSKDNY
                     VSVLMMENKVVTKLVLAEHDIRVPFGDSFSDQALALEAFSLFEDKQIVVKPKSTNYGW
                     GISIFKNKFTLEDYQEALNIAFSYDSSVIIEEFIPGDEFRFLVINDKVEAVLKRVPAN
                     VTGDGIHTVRELVEEKNTDPLRGTDHLKPLEKIRTGPEETLMLSMQNLSWDSIPKAEE
                     IIYLRENSNVSTGGDSIDYTEEMDDYFKEIAIRATQVLDAKICGVDIIVPRETIDRDK
                     HAIIELNFNPAMHMHCFPYQGEKKKIGDKILDFLFE"
     gene            7007..7894
                     /locus_tag="U0342_000234"
     CDS             7007..7894
                     /locus_tag="U0342_000234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2421616.1"
                     /translation="MKIRNLTKKMDDNLVLKDVSFDLKAGEITALIGRNGVGKTTLFS
                     TMTGIYLPDEGDVFLGEESIFKHPEVKQQLFFLEDNMNHFNTYSVQTVVKIYRQIYTT
                     FDEAFFNELMQRFELPMKAKLMSFSKGRKALFFIILAVSLNVRFLLLDEPMDGLDIII
                     KKQILATIKDTVKKRGTSVVIASHRLEELEAIADRVIVLKGASVELDYYLEDMRTDAV
                     KIQVAFKTKKIPDFVKNNAQLLYRNGRIYTLLVTENASSFLAELRLEEPVLLEEMSIS
                     IEDIFTVHLANDKIDYYEI"
     gene            7921..9051
                     /locus_tag="U0342_000235"
     CDS             7921..9051
                     /locus_tag="U0342_000235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM2421617.1"
                     /translation="MFNRGLWYREWRNMRWMLLGVVILFFLGITLGLMSDADRWNSQK
                     EYYESSEFLKQQKENPEFKTSDEEMKASLTVAYLAVPMYTNFVQDEFVDYMPFMFYFQ
                     VEMFFTLIKVSVFILGVLAVIFERYTRANRFTASLPYKRTHIVGVKMMMGIATIGLSY
                     LISMGIGLTYFMSHVPKEYIQLDAPKFWVDIVGGLFTYLLIFLVAILIGLLIGSPIAA
                     AFVAFGVMLLPSVLNPTLDNMYNFIWPHGGDKGMSKLLRFEDYVNIFSPFSFESASFG
                     AVIFSVILSVLMVVAILILYKKQHIERSGYLFAFSWVKWPFLVLFSLFVGMTAANLAV
                     TDTELGFVGYLAWGIGATIGSFILALYILNKMRGLFQLSKTN"
     gene            9122..9784
                     /locus_tag="U0342_000236"
     CDS             9122..9784
                     /locus_tag="U0342_000236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1129 family protein"
                     /protein_id="HEM2421618.1"
                     /translation="MTTETETIKPQLAELKANLTKRNLQYVMEVEKHLRETHYSAEQQ
                     EIIVYEMSEKILAEQKKGITARKLFNLTPTEYVVSLDVKAATVEQNTDKWWLVLDGGL
                     LVLGAMMLISGISAYFQKNAQTLGIIVLLITAVVGGFAMLILRKYASNMRAGQKGGTI
                     KYLLVAVGVIAVWMFVMTIVQVTIPPNINVALSPIVNTVGGAIIIALRFYVKKKKNIP
                     SL"
     gene            9885..10619
                     /locus_tag="U0342_000237"
     CDS             9885..10619
                     /locus_tag="U0342_000237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2421619.1"
                     /translation="MFSYEVIRQFTETEHHLYRYIMDNRDKVMFMRVRELSEVTHVSP
                     ASIVRFTRKLGCEGFSEFKVKLKQEATREVKKKTADTVEVLEEFFERTMNRDYDHVLD
                     AAAEIINEADLVVFFGIGTSGILAEYGSRFFSNMKKRTFYIKDPFYPNPGEQFKNKAV
                     MIILSVSGETDQVLEQAQNMQQYGSRIISITNTSHNTLAGLSDVNIPYYVTQEMVDKT
                     NITTQIPVLFLLEAMAKKNYNQEQEE"
     gene            complement(10659..10967)
                     /locus_tag="U0342_000238"
     CDS             complement(10659..10967)
                     /locus_tag="U0342_000238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2421620.1"
                     /translation="MNEMETVIFGMISQVGSARSSYLEGLRAAREGNFEEAEAKLQEG
                     SETLANGHHEHHKLIQKEASGEKVEIQLLLIHAEDLLITTETLREVVTEFVHVYKKIS
                     "
     gene            complement(10960..11844)
                     /gene="bglK"
                     /locus_tag="U0342_000239"
     CDS             complement(10960..11844)
                     /gene="bglK"
                     /locus_tag="U0342_000239"
                     /EC_number="2.7.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-glucoside kinase"
                     /protein_id="HEM2421621.1"
                     /translation="MKIAAFDIGGTALKMGVVLPHGEIILTKSAEIIASDGDQILAEM
                     KLFLAENTDVTGIAVSAPGYVNPKTGLITMGGAIRRFDNFNLKEWLEAETGIPVAIEN
                     DANCALLAEKWLGKGQNLDDFLCLTIGTGIGGGIFSNGALVRGGRFRAGEFGYMFSER
                     PGAFRPGKYTLNETTTMLVLRRQYAELTGRPLEEITGEEIFAKYDGHDAVSERLITEF
                     YTGICTGLYNLIYLFDPTHIFIGGGITSRPTFITELKHHMESFGLRDTIIETATHKNQ
                     AGLLGAVYHFLQEENRHE"
     gene            complement(11856..13208)
                     /locus_tag="U0342_000240"
     CDS             complement(11856..13208)
                     /locus_tag="U0342_000240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2421622.1"
                     /translation="MSIMSKFEHGMERVLVPVANKLNSQRHIAAIRDAFILVFPLIMA
                     GSIITLINFAVLSPDGFIAKILFLGKIFPNLADAQAVFSPVMQGSTNIMAILIVFLVA
                     RNLAIFFKQDDLLCGLTSIGAFFIVYTPYTVVDNASYMTIKFLGAQGLFVAIIVAIIT
                     GEVFSRLARSPRLMIKMPDQVPPAVARSFKVLIPVIIITILFSVINYLITLIAPEGLN
                     DLVYTVIQAPLKDMGTNVFSVIIIGLVSNLLWVLGIHGPNTVAAIRDTIFTEPNLDNL
                     SYVAQHGSAWGAPYPATWAGLNDGFANYGGSGMTLGLLIAIFIASRRADYRDIAKLSL
                     APGIFNINEPVIFGLPIVLNPIMVIPFIITPAINTLIGYFFISTKLIPPVAYQVPWTT
                     PGPLIPFLGTGGNWLALLVGLLCLAVATVIYLPFVLVSNKIAASDAAMDKNATASTEQ
                     "
     gene            complement(13241..13543)
                     /locus_tag="U0342_000241"
     CDS             complement(13241..13543)
                     /locus_tag="U0342_000241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2421623.1"
                     /translation="MKKILLVCAAGMSTSLLVTKMKAHATSIGEEIEIEALPVSEASS
                     VVDKMDIVMLGPQVRYQKPQVDELVQGRIPVIVIDMKDYGMLNGKAVLEKAFAEIG"
     gene            complement(13587..15041)
                     /locus_tag="U0342_000242"
     CDS             complement(13587..15041)
                     /locus_tag="U0342_000242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2421624.1"
                     /translation="MEHNKLKPFPKDFLWGSASAAYQVEGAWDEDGKGPSVWDEFVRI
                     PGTTFKETNGDVAVDNYHRYKEDVALMAEQGLKAYRFSVAWSRVIPHGNGEVNEAGLK
                     FYDNLIDELLSYGIEPVVTLYHWDIPQGLQDEYGGWESRKVVEDFTNYAALLFERFNG
                     RVKYWVTLNEQNVFISHGYKLAYHPPGVSDDKRMFAANHNANLANASAIAKFRELGTS
                     GKIGPSFAYGPSYSIDANPANVLASENSEEFNAHFWMDVYTWGEYPTATWNWLEEHGL
                     APEILPGDTELLKKGKPDFMGVNYYRSMTHAFNGKDGVGSGKMNTTGEKGTSEETGVP
                     GLYKNTNNPYLEKTNWDWDIDPTGLRIGLRRITNRYKLPIMITENGLGEYDSLTEDHK
                     IHDEYRIEYIRAHALAIQEAITDGVEMLGYCTWSFTDLLSWLNGYQKRYGFVYVDRDE
                     NDEKELKRYKKDSFYWYKKTIEANGANLVEEQGK"
     gene            complement(15069..15377)
                     /locus_tag="U0342_000243"
     CDS             complement(15069..15377)
                     /locus_tag="U0342_000243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421625.1"
                     /translation="MGRLRQCNCNTGKNCTDNIQKFSYTSSRIQKKHVISPLFINTYR
                     IRDTSPNVNCSSNHMHETQRFSSETYTIDMKHEPKAPKSIYQLVETVYINKASKTKTD
                     "
     gene            15559..17169
                     /locus_tag="U0342_000244"
     CDS             15559..17169
                     /locus_tag="U0342_000244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM2421626.1"
                     /translation="MTIVAMNDVVKSFTGDIILEKVSLQLEEGERVGLIGRNGEGKST
                     ILKILKGTEGVDSGIVTSKKGAKIGLLEQLSTVDPNIIVEQYLRTSFGELEELEKELR
                     ALEGEMATNSSEKLMNRYGDKMALFGELGGYEMDANLNKVVNGLGIGLLLSQRWGDLS
                     GGEKTKAALAHLLLQKTDLLLLDEPTNHLDLMAVEWLTAFLQHYSGTVLVVSHDRYFL
                     DEVVGKMVELENRELIVYHTNFSGYLKEREERLLREFQDYKDQQKKIKKMQQAIKRLR
                     QWAMQANPPNDAMFRRAKNMERALERMEKVKRPVLTQKQMQLQFDEAGRSGQEVVVME
                     NLSKSFSEKAIVQDVSLQIRQGERVAIIGENGAGKSTLLKIMEGKVVPDVGMIKVGAS
                     VKIASLSQQMEELNEKLTVLDAFRDKVAVTEGEARQMLAGFMFYGEMVFRKVGNISGG
                     ERMRLRLAQFINMPVNTLILDEPTNHLDIASREILEEAIRAFSGTIITVSHDRYFIDQ
                     LCSKVIWLENKQLTVYEGNYSYATSKRR"
     gene            17227..17757
                     /locus_tag="U0342_000245"
     CDS             17227..17757
                     /locus_tag="U0342_000245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ADP-ribose-binding protein"
                     /protein_id="HEM2421627.1"
                     /translation="MEITVVKGDITEQDVDVIVNAANPGLLGGGGVDGAIHQAAGPDL
                     LKECQEVINRIGTCPAGEAVITSAGDLQASYIIHAVGPIWKDGEHQEANKLASCYWKA
                     LDLAAGKELTSIAFPNISTGVYGFPKKLAAEVALYTVRKWAEEEYDTSIEEIRFVCFD
                     EENLKLYNKLINSEVV"
     gene            18045..19511
                     /gene="guaB"
                     /locus_tag="U0342_000246"
     CDS             18045..19511
                     /gene="guaB"
                     /locus_tag="U0342_000246"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM2421628.1"
                     /translation="MWETKFAKEGLTFDDVLLVPAKSDVLPNDVDLSVEMAPSLKLNV
                     PIWSAGMDTITEAKMAIAIARQGGIGVVHKNMSIEQQAEEIEKVKRSESGVIIDPFYL
                     TPDHQVFAAEHLMGKYRISGVPIVNNEKERKLVGILTNRDLRFISDYSTVIKDVMTKE
                     NLVTAPVGTTLKQAEQILQKHRIEKLPLVDEAGILKGLITIKDIEKVIEFPNSAKDKH
                     GRLLAAAAVGITNDTFVRVEKLIEAGVDAIVIDTAHGHSAGVINKISEIRQTFKDVVI
                     VAGNVATAEGARALFEVGVDIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATVAREF
                     GKTIIADGGIKYSGDIVKALAAGGNAVMLGSMLAGTDESPGETEIFQGRQFKTYRGMG
                     SLAAMEHGSKDRYFQADAKKLVPEGIEGRVPYKGSVADIIFQLVGGIRSGMGYTGSPD
                     LRHLREEAAFVRMTGAGLRESHPHDIQITKEAPNYSIS"
     gene            19672..21444
                     /gene="recQ"
                     /locus_tag="U0342_000247"
     CDS             19672..21444
                     /gene="recQ"
                     /locus_tag="U0342_000247"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase RecQ"
                     /protein_id="HEM2421629.1"
                     /translation="MIEQARAILQQNFGYQDFRNGQVDVISKLCAGEDTLAIMPTGGG
                     KSLCYQIPALLFDGLTIVVSPLISLMKDQVDALVSEGIAATFINSTLTNREIDIRLDA
                     AFSGELKMLYIAPERIETPGFQRLIEQVPISLFAIDEAHCISQWGHDFRPSYLTLCDS
                     LDKMTRRPLVIALTATATQAVSDDICRLLKIGADSVVKTGFSRDNLAFQVVKGQDKDK
                     YLIDYLTKNVTESGIIYASTRKEVERLHTFLLKKGVESGMYHGGMTDLARKDWQEKFL
                     YDDIRVIVATNAFGMGINKSNVRFVIHYNIPRNIEAYYQEAGRAGRDGVPSDCILLFS
                     PQDSRIQQFLIEQSEMDDERKQNEFAKLRQMTGYGYTEICLQKYIVQYFGDDEENCEK
                     CSNCLDTREATDVTILAQQVFSCIKRMGERFGKVLIAKVLTGSADQKVKDWRFDELST
                     YGLMKDASQKDVLQLIDYLTAEKYLQPTDSQFPSLKLTDRAVSVLRGELKVERKQAKR
                     AEKVKIDVNSDLFEKLREVRRELAAKHKVPPYIIFSDETLREMCAYMPQTEDALLEVK
                     GIGAMKRDKYGAEFLAVLQQEASK"
     gene            21468..23621
                     /locus_tag="U0342_000248"
     CDS             21468..23621
                     /locus_tag="U0342_000248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HEM2421630.1"
                     /translation="MTKTLVLAEKPSVGKDIGRVLGAKQGKNGYLEGGKYVVTWALGH
                     LVTLADPERYDSKYKNWNMEDLPMLPEKMKLEPIKQTRKQYETVKKLMNRTDITTIVI
                     ATDAGREGELVARWIIDYAKIKKPLKRLWISSVTDKAIREGFEHLKPGKAYENLYHSA
                     VARSEADWVVGINATRALTTKYNAQLSCGRVQTPTLAMIQHREEEIRNFKPREYYGIT
                     ALTEQESFTWNNGQTFDKALAEKLVKSLQGENAVITDVSMKEKKNFSPGLYDLTELQR
                     DANNRYDFSAKETLNIMQTLYERHKVLTYPRTDSRFISTDIVPTLKERLAACGVGENA
                     KAARQISGKPIKANKSFVDNSKVSDHHAIIPTEQPVSLGDLSDKERKIYDLVVKRFLA
                     VLSDPYIYEETSVKAKIGQEEFTLKGKVVKSLGWKSIYGESREPDQLTKMKKGDTIPV
                     KRINLETGKTKPPARFNEATLLSAMENPSKYMETTNKALAKTLGETGGLGTVATRADI
                     IEKLFNSFSLEKQGKDIHITSKGRQLLELVPEDLKSPELTARWEQKLSKIAKGELDYR
                     KFTEEMRDYAKKAVTEIKQNDKKFRHDNITSQKCPDCGKPMLKVKGKRGTMLVCQDRE
                     CGHRESVSRTTNARCPNCHKRMEMRGEGDKQIFVCICGHREKLSAFQQRRDKQKNKNV
                     SKTDVAKFMKKQNKQEDEPFNNPMAEALAKLKLDK"
     gene            23730..25397
                     /locus_tag="U0342_000249"
     CDS             23730..25397
                     /locus_tag="U0342_000249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEM2421631.1"
                     /translation="MKHNQLIIETDVPAEMRDGVTLYADIYRPADAGEYPVLLTRLPY
                     SKSYGLHFIRPNILAEQGYVVIVQDVRGRYTSEGDFVPYIAEVDDGYDTIEWAANLPY
                     ANGNVGMFGLSYYGYTQILAAISGNKHLKAIAPIMAQNSMTDVFNDHDGALELGMWET
                     WNLESMLPNMLARTYKTQDELEEAVNTLMKNLDNLDALYQFKPYKDWPAIGQNEMPYF
                     SELLNYEPTHNHWQKIDAKSNYDKINVPGLHVAGWYDCFLDKTIANFQNGHLRGLGDK
                     LIIGPWTHANFTQMIGDRDFGMAGTKWGEANMHARHIEWFNHWLKKEPLPASAPVNYF
                     VMGLNDWKTAENWPPQNANMTPLYFKNEKVSAEFTPPTTSSEAKFSYDPENPVPSNGG
                     GTLHKALNADGPRDQQQIELREDVLCYSTEPLKEAIEVTGSIQVKLWAKSDAPNTDFT
                     AKLVDVFPDGTAFNLADGIIRAAKQHGDNVQNNINEYTIDLWATSNLFQKGHQIRVEI
                     SSSNFPRFDPNPNTGDNFINSTESQIANQTIYHSPEFPSHILLPIVR"
     gene            25576..26913
                     /locus_tag="U0342_000250"
     CDS             25576..26913
                     /locus_tag="U0342_000250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM2421632.1"
                     /translation="MKNIIKKTGIVIMAASLAVSGFLVSPKAAQAAEAPNVNANAAIA
                     IEESTGKILYSKDADKLMGIASMTKMMDEYLLLEAIDKGQIKWDDKVTISEYAYKVSQ
                     DTSLSNVPLRLGEEYTVQELYEAMAIYSANGAAIAISEKIAGSEKEFVDAMNKKADEL
                     NLGEHQFVNATGLNNEDLKGGQQVGGPKDENKMTARGMAKLAKHLINDYPDVLKTAST
                     TKKEFRKGTSDQIDMTNWNWLLPGLIYGRKGVDGLKTGTTDYAGMCLTATAVQDGMRV
                     ITVVLHANGGAPGEHTSARFDETNKMLDYAFNNFKVKEVQKAGSKVKNPSTIAVDKGK
                     EDTVGLVTKDAVKLVVPKNGNEPKLNTKVTMKEKTIEAPVKKGTEVGKMEVSLKDGDK
                     LGYVDGKQTETIDVLTASDVEKANWFMLSAQAVGSFFTGIGNYVSDGVKGWFN"
     gene            complement(26994..27941)
                     /locus_tag="U0342_000251"
     CDS             complement(26994..27941)
                     /locus_tag="U0342_000251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM2421633.1"
                     /translation="MGILNEKVAVLLPCYNEELTIGKVIDDFKKELPNADIYVYDNNS
                     KDKTFEIAKDHGAIVRKEMRQGKGNVVRSMFADIDADYYLMVDGDDTYPAEYCHEILE
                     VLRNKEANMVIGDRLSNGTYTEENKRNFHDFGNSLVRNTINRIFKSNLRDIMTGYRGF
                     DRYFVKTMPVLSPGFEIETEMSIHALENRFLVKEIEIDYRDRPEGSESKLNTFSDGFK
                     VIMTIVRLFKNSRPFLFFNLLASLFVLVGVLVGLPVIIQFAQIGLVLKFPSALLATGL
                     IIMGMLFFICGLILDTIAHRSRQSYFLELVKYRERNPLN"
     gene            complement(27952..29805)
                     /locus_tag="U0342_000252"
     CDS             complement(27952..29805)
                     /locus_tag="U0342_000252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421634.1"
                     /translation="MLNKKRVIVGVLLLLLSLISISYYSETFKLTLSWLLFAVVLTVL
                     YFRQEKNFQFQWSTLITSLIISLFWMASSFNGGPYGGNFVFNSIILAGTFLVITIFVL
                     LLLLEMRTEYKARPNRKVKWPFFALFTSIPFVVWMISFLAYYPAKMTFDSYYQWGMAH
                     GIRQYSQWHPLLHTLWIETTSAIYDSPSSYIFSQIIVVSLIVGFAIYTLVKMGAHIWI
                     GVCISIGYAIYPAAMFYSATAWKDFPFAAFILLFTVLILKIVQSNGMWLKNWWHLIAF
                     VLVAFVCINLRNNGMMIIIVSLLCLLIFMKNFRLIITGILVGTLGLNFLFGLVMTNGL
                     NAQPNPLNQALAIPSQQIGATFYNDGNFTPELKEYFTSILPEENWKKDYNPYTVDPIK
                     HDTKYNSSVIEDDFGLYIKNWFKLLTANFGTYVGAYLDQTAVIWQFYSPENYKVFFDT
                     SANIQDTRYDVRAFAKFFPEGLSEEEINKLGYEVYQNEYKNATGKDAVSYNEYKRRID
                     DSTNPLISISKAPSLKKITDSIYAKTTNEWQNYLLKGAIPLVLLIIAIAAVCLQRPKK
                     KLLIFAPVVMALITIAIAMPATDFRYSYSFIFTVPIVFFATKLKNYKENQF"
     gene            complement(29985..31757)
                     /locus_tag="U0342_000253"
     CDS             complement(29985..31757)
                     /locus_tag="U0342_000253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466274.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2421635.1"
                     /translation="MKEFKQISRFFWHYLRGYKPQLFVILIAVVFATYLQVKAPQYIG
                     NAVQELGDYVVNLMQTGVDDKSDFIHIIWMLILCYVLLAAATFIQSIIMTGVAGKSTN
                     RMRIGLFRKMEKLSIRFFDSRNDGEMLSRFTSDLDNISNTLNQALIQVLSNVALMIGV
                     IIMMFQQNVELAFVTLISAPFAIIIATVIIRKARKFVDIQQDELGVLNGYIDEKISGQ
                     KIIITNGLEEETIDGFVKQNNIVKNATYKGQVYSGLLFPMMQGISLLNTAIVIFFGGW
                     LALNGDLERTAALGLIVMFVQYSQQFYMPLTQISSQYSLLQLAITGARRVSEVFAEEE
                     EVERENLQTIDGINKGVKLDHVDFAYDPAKPVLKDVSIDVSKGKMVALVGPTGSGKTT
                     VMNLLNRFYNVDGGAILFDDIDIRDIRLDSLRKQVGIVLQDSVLFTGTIRDNIVFGKP
                     EASDDEVINAAKQANIHDFIMNLEKGYETEISDENNIFSVGQKQLMSIARTIITNPSL
                     LILDEATSNVDTVTESRIQKAMDNVISGRTSFVIAHRLKTILDADHIVVLHQGEVIEQ
                     GNHDELMKAEGFYSELYHNQFVIE"
     gene            complement(31757..33478)
                     /locus_tag="U0342_000254"
     CDS             complement(31757..33478)
                     /locus_tag="U0342_000254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2421636.1"
                     /translation="MKVLFHHLKKYKLQATLSTLFVVVMVISQLWQPKLLQQVLDAIM
                     KDDMDEISSIGALLIGIAAVGLIAGILNTILSAKVAQGVGADIRESSFRKIQTFSFSN
                     IEKLSTGNLVVRQTNDITQVQNLVMLSLQSLTRIPIMFIGAFILAMFTLPELWWVIIV
                     LVVLVVLIVVFTFGSMGKHFAIIQKLIDRVNSIAKENLAGMRVVKSFVQEDNEISRFT
                     TVSDKLTRHTIIVGTLFSVMIPAFMLVSNLAIVVSIFFVGDMAADNPEVIGAIASFMN
                     YLMQIMMAIIIGGMLMMMASRALISLKRITEVLETEPDITYNESAPEQDLEGTVEFRN
                     VSFKYDGDDTPALEDISFKASVGEMVGIVGATGSGKSTLAQLIPRLYDPTEGEVIIGG
                     TNLKDINKKTLRSTVSFVLQRAILFSGTIADNLRHGKKDATAEEMEHASKIAQAKEFI
                     DKQAKLYEAPVSERGNNFSGGQKQRLSITRGVIGSPKVLILDDSTSALDAKSEKLVKE
                     ALNKELDDTTTFIIAQKISSVIQADKILVLDKGKLVGVGSHKELLKENETYREIYDTQ
                     KGKEVTA"
     gene            complement(33640..35346)
                     /gene="pabB"
                     /locus_tag="U0342_000255"
     CDS             complement(33640..35346)
                     /gene="pabB"
                     /locus_tag="U0342_000255"
                     /EC_number="2.6.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate synthase component I"
                     /protein_id="HEM2421637.1"
                     /translation="MSLLRFDFEGDTKIFENPLYELVTHDLAEVLPIMKAAEEAQKSG
                     KYVAGFVSYEAAPAFRSNLKTKKPSGNMPLVWFGVYDNFNDTATETPDSSPLSFKMNT
                     SFPEYAEKIEQIKAEIAAGNTYQINYTVRLQSDVPNSFSSQATYETLQQIGKANYTAL
                     LSTSDFEIISASPELFFKWKENLLTTRPMKGTIRRGITEQADLEAHDWLKNDPKNRAE
                     NVMIVDLLRNDLGMIAVPGSVKVPKLMTLEPYPTVWQMTSTVTAETPPETDLTAVFKA
                     LFPCGSITGAPKARTMEIISELEDSPRGVYCGAIGFLEPNGNAIFNVPIRTIAIADNK
                     ATYGVGGGIVWDSEAASEFSEIHAKSAILEKTTKFSLIECLRIENGELFRTEYHLKRL
                     QTSADFFGIPFNREETEKLWTKTAQKNTTDTYKMRFLLHPDGAHDLELTRIDTKNKRI
                     TAQLADKPVPSNDLFLYHKTTHRKVYENLKNTQTEETLLWNERGELTEFINGNIVLGI
                     NGCFFTPPVTSGLLSGTMRAELLAKNKISEKTLAKKDLLEADYVWLINSVRGFIEVEI
                     KQ"
     gene            complement(35343..35915)
                     /locus_tag="U0342_000256"
     CDS             complement(35343..35915)
                     /locus_tag="U0342_000256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEM2421638.1"
                     /translation="MILIIDHNDSFTYNLYQYFLELQEEVQVVSATNFSLEIFQQLVP
                     EMVVLSPGPGSPEDFPVSLALLGKIQVPILGICLGHQMIGHFFGAKVVPAKVPVHGKT
                     SIISHTGEGLFAELAPKFQVTRYHSLVIDPATVPANLKVTALTEDGVIMGLAHVSKPI
                     HSVQFHPEAILSENGHAILENFIRLGRNVK"
     gene            36045..36464
                     /locus_tag="U0342_000257"
     CDS             36045..36464
                     /locus_tag="U0342_000257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxamine 5'-phosphate oxidase family
                     protein"
                     /protein_id="HEM2421639.1"
                     /translation="MKNELEDKILAILEQHQVGVLTSVQGDYPHARYMTFLHDGLTLY
                     TPSGKELPKTEEVRRNPHVSVLIGYESPGSAFLEINGLASLEEDESIKERIWENISKE
                     WFQGEDSPSFVVIKIVPEQIRILNSDDDGPDTLDLIG"
     misc_binding    36517..36739
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            36798..38081
                     /gene="serS"
                     /locus_tag="U0342_000258"
     CDS             36798..38081
                     /gene="serS"
                     /locus_tag="U0342_000258"
                     /EC_number="6.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine--tRNA ligase"
                     /protein_id="HEM2421640.1"
                     /translation="MLDVKLLRNNFDEVKQKLQNRGEDLGEFEKFGELDKRRRTLIVE
                     TEALKSQRNEVSQEIAKLKREKQDADAKIEEMRVVGDRIKTLDIELREIDEKLDMILM
                     SIPNIPHESTPVGESEDDNVEIRKWGEVREFDFEPKAHWDLGTDLDILDFENAAKVTG
                     SRFVFYKKLGARLERALINFMMDLHSNEHGYEEMLPPYMVNRASMTGTGQLPKFEEDA
                     FLIEAEDYFLIPTAEVPVTNYHREDILKAEDLPRKYTAFSACFRSEAGSAGRDTRGLI
                     RQHQFNKVELVQFVKPEDSYAALEKLTGNAEEVLRRLELPYRVLSMCTADLGFTAAKK
                     YDLEVWIPSYNSYREISSCSNFESFQARRANIRFRREPGSKPEYVHTLNGSGLALGRT
                     VAAILENYQDADGSVRIPKVLQGYMGGIEKIELPK"
     gene            38101..38352
                     /locus_tag="U0342_000259"
     CDS             38101..38352
                     /locus_tag="U0342_000259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TfoX/Sxy family protein"
                     /protein_id="HEM2421641.1"
                     /translation="MANLSELPNIGKVLEQDLIKAGIKTPVELKDVGSKEAFLRIWEN
                     DSSVCLSELYALEGAVQGIRWHGLDEAKKIELKKFHQSL"
     gene            complement(38406..40133)
                     /locus_tag="U0342_000260"
     CDS             complement(38406..40133)
                     /locus_tag="U0342_000260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2421642.1"
                     /translation="MDQKKYSWRKFFQLLISAKPANWIIFCALFASVITTVAGLVVPL
                     FTKNLIDGFSIASLDVKMIALIVLAFVLQAITNGFSIFLLNYMGQKVVATIRERLWKK
                     IVHLPVSYFDNTKTGEMVSRMVNDTVVVKELIADHFPQFVTGIISVVGAIIILFFMDW
                     KMTLIILVAVPITALVVAPLGQKMFKISKGLQNETADFTGSISQTLSEARLVKASNAE
                     TLETEAGHQGINRLFGFGIREAKVVAVLGPLIFFVVMGVIVGIIGYGGIRVSAGTMTT
                     GTLIAFLLYLFQIIVPVTSFATFFAQLQKAKGATERIADILNETEEDFDAGKKVDVSG
                     KTIRASDISFSYNEGEPILKHVSFDTKPGEVIAFAGPSGGGKSTLFAILERFYQPKTG
                     EILVGDIPLSEISINSWRTQIGYVSQESAMLSGTIRDNLCYGLDREITEDELWNVAKL
                     AYADGFISELPDKMATEVGERGVKLSGGQRQRIAIARAFLRNPNILMLDEATASLDSQ
                     SEQIVQQALANLMEGRTTFVIAHRLSTIVNADQILFIEHGEITGRGTHSELVASHPLY
                     ASFAEQQLK"
BASE COUNT        12594 a         7158 c         8557 g        11912 t
ORIGIN      
        1 atctatttca ttttaaattt aattacaaat aagatactgt tacctagggg aggaataatc
       61 gaaaatagtt aagggtagaa tggttttaac aaaacccatt gacagcgatt tcatatggtg
      121 gtactatatc catgaggctt gttaccggta atgcgggcaa taccagatat tagttttttt
      181 ggctgatatg tgtggtattg ctctttttat tttgcttcaa ataggtggtg atttgtttga
      241 gaattgagag gattttaaat aataatattg taagtgcgat tgacgaggat gcgcaggaat
      301 tgctgatttt gggaaagggg cttggcttta attctaaagt tggcgatcca attaatgaat
      361 cgaaaatcga aaaagttttt gagttgaaag atgacacaat ggataagttt aaaatgattg
      421 taaatgaaat tccaatacaa tttttagaag taactgacga tattgtgaag cttttcaaaa
      481 tgaaaacgac gaaagatatt agtgatgtca tctatatttc tctttcggat catctgtact
      541 ttgccacgca acgtttgcaa gaaaacgtgg ttatcgaaaa tccgctctcg tgggaagtga
      601 aacgctttta tcaggaagaa tacgcagtgg ccaaagaggc tgcgaaaatg gtggaaagta
      661 agcttgaaat agagcttcct gatgcagaaa tttctaatat agcgctacat tttgttaatg
      721 cggaagtaga tagtgatatg aacgacgtca cacacattat gcagttaatt caagaaatta
      781 tttctattat taaatatcat tttaacattg aatttgatga agaaagtacg aattattatc
      841 gttttatgac ccatctgaag tttttctgtc aacgcgtaat tattggcgag acaattgacg
      901 aaatggatga atttctttat caaacagtga agaaaagtag aggcgctatt ttcgaatgta
      961 ttgataaaat tggtgtgttt ttggaaaaga attatcaatt tacgatgagt cattcggaac
     1021 agttttatct ggcgcttcat attgaacggc ttttaaaaag aaaaaataac taataggctt
     1081 gttaccgcga tttgcgggca atacctggat gattgtatgc ttttttaggt gcatttcatt
     1141 caggtttttc tattatattt aggaggatta gcatggacta caatcaatta gcaaaagaaa
     1201 ttttacaggc agtcggtggg aaaaataatg tgaatgaagt ttatcattgc attaccagac
     1261 tacggtttca attaaaagat caatcgaaag taaatgaaaa acaattaaaa gatttggata
     1321 aagtgatggg gacgaatgtt gcggggaatc aattccaagt aattatcgga aatgacgtgc
     1381 ctaaagtgtt tgacgcatta gtgacagaaa atcctgcttg gaaaaacaaa gaaacgacaa
     1441 ataaaacgac acggcaaaaa ggaataaaag gatttttctc gaatatcttt gatgcacttt
     1501 cgggcgtgtt tgcaccaatt cttcctgcga ttgcgggagc aggtttaatc aaaggtttca
     1561 tggcattatt tgtttcactt ggttggttag caacagatac agaaacttac cgtatcttgt
     1621 tagctatcgg tgacggggta ttttacttct tgccaatttt agttgctgta agtgccgcgc
     1681 gttactttaa agcgaatatg tttgtcgcgc ttggaattgg agcggcgcta ctttatccgg
     1741 atttaacggc tttacttagt gcggggacaa cgccacactt tattgggtta ccagtaactc
     1801 cagtgacgta tgcttactct gttattccga ttttacttgc aatttggatt atgtcttatg
     1861 tggaaaaatg ggtggaccgg attattccaa cctcgttaaa actgttgttt gtcccattaa
     1921 ttacaatgtt tattgttgtt cctttgacgc ttgttgttat tgggccacta ggtacatttg
     1981 ttggagacgg tgtatctggc ggaattaact ggttattaaa taatggtgga gttattggcg
     2041 gtatcttgat tggtggtgcc atggccatta tcgttatgac tggtatgcac tatgcaattg
     2101 ttccatttgt tattagtaat ttagcaaaat atggttatga taaattttta ccgttaactt
     2161 atatttccaa tatgagccaa gcgggagcga ctttcggtgt atttttccgg gcaaaagata
     2221 aaaaactgaa atcattagca ttttcaactg gtttaactgc attaatgggt gtcacggaac
     2281 cggcaatgta cgggataaat gtggtatata aacgtccttt catggcgtcg ttaattggtg
     2341 gggctgctgg tggtggcttt gcaatgatgt ttggtgtaaa agcgtatgtc ttaactggta
     2401 acggtggtat tcctggactt ccaggtcttg tcggagatac ttttgtttat gcattaattg
     2461 cgatggcctt agcatttatc gtggctttaa ttttctctta tattttcggt attgatgagc
     2521 aaatagtaga agcaactcct gtagcagaaa aaatagcagc tgggacagaa gttttgcaag
     2581 ctccagttac tggtgaatta gtaaaaatga gccaagtaaa tgatactact tttgcagatg
     2641 aaattatggg taaaagtatt gcgattaagc caaatgaagg taaactttat gctccagcta
     2701 acggcacaat catttcgctt ttcaaaacaa aacatgcgat tgctatgcag tcagataatg
     2761 gcgctgaaat attattacat gtaggcattg atacagtgaa gcttgatggt aattacttca
     2821 cggcacatgt tgcgacgggt gatgtagtgg aacaaggaga tttattagta acgtttgata
     2881 tggaaaaaat tgcagaaaaa tatgatacaa caacgatgat ggtaattaca aatactaatg
     2941 aatatgcttt ggtagaagct aaggatagtg gaacggtaac gaaagggaat caagtaatgg
     3001 aattaaggag tgagcaaaat gagtaatacg aagtttccag atggctttat gtggggcggg
     3061 gcgaccgcgg ctaaccagtt tgaaggtggt tataatttag gcggaaaagg gcttgcctgt
     3121 gcggatttat tcactggtgg aacgcataca gagccaagaa gaattaccgc acaattagaa
     3181 gaatccactt tttatccaag tcatgaagca gtggactttt atcatcatta taaagaggat
     3241 attaagttaa tggcagaagc tggatttaaa gtgttccgga tgtccataaa ctggactcgt
     3301 attttcccga caggaaagga agcagagcct aacgaggaag gattacagtt ttatgaagat
     3361 gtttttaagg agctgaaaaa atatcagatt gaaccgttag tgacgattgc tcattttgat
     3421 attccgctag cattaacgaa tgaggtgaac ggctgggcgt cgcgtgattt gattgattac
     3481 tatcttcatt attgtgaagt gatttttaaa cgctataaac atttagtaaa acactggttg
     3541 acgttcaatg aaataaatac tgcaacaatg gaaattggga attatttatc gcttggcatt
     3601 cgtcatgcgg agggagattt ccttcatcaa aaagatgacc caacagtgag atatcaagcc
     3661 cttcatcatc aatttgttgc tagtgcaaaa gcggtaaaac taggccatag catcaaccca
     3721 gaattcatga ttggctgcat gattgcttat atgccacgct acccgcgtac ttgcgaacca
     3781 actgatgtct tgttggctaa gcaaacggaa gcaatgcaca gccatttctg cggcgacgtt
     3841 catgtcaaag ggtattatcc tttttatgca aaaacattct ttaaagataa tggtattgag
     3901 cttgaatttg acccagaaga tgaacaagtt ttgcgagaag gcacggttga tttttatact
     3961 tttagctatt atttaacgct ttgtgcatcc aacgatcctg cctataaaaa ttcgggaaaa
     4021 agtgttattg gaggggctga aaatccttat ttaaaaacaa atgattgggg aatgcagaca
     4081 gatcctgtag ggcttcggat tgcactgaat gatttatata ctcgctataa tattccgctt
     4141 atggtagttg aaaatggttt aggagccttt gataaattgg aagacgatgg gacgattaat
     4201 gatccgtatc gaattgatta tttcaaagaa catattcttc aaatgcataa agcaattcaa
     4261 gatggtgtag atttgattgg atttactatt tggggttgta ttgacctagt gagcgcatct
     4321 acaggggaaa tggccaaacg ttatggtatt atttatgtgg ataaatacga tgatggaacc
     4381 ggtgattatt cgcgtaaaaa gaaagcatcc tattattggt ataaagatgt gattagttca
     4441 aatggtgaaa ttggattgag agagtaatat aaaatcccag ctacgaaact agtagctggg
     4501 atttttttat tcaaataaga aatctaaaat cttatcacca atttttttct tctccccttg
     4561 ataagggaag cagtgcatgt gcatcgcggg attgaaatta agctcgatga tagcatgctt
     4621 atcacggtcg attgtttcac gtggaacaat tatgtctacg ccgcaaattt tggcgtcaag
     4681 tacttgtgtc gcacgaatag ctatctcttt gaagtaatcg tccatctctt cagtatagtc
     4741 aatgctgtct ccacctgtgc tgacgttgga gttttcgcga aggtagataa tctcttctgc
     4801 tttaggtatg ctgtcccaag aaaggttttg catagagagc atgagcgttt cttctggacc
     4861 agtacggatt ttttcaagtg gtttcaaatg gtctgttccg cgcaaaggat cagtgttctt
     4921 ttcttcaacc agctcgcgca ctgtatggat tccgtcgccg gttacgttag cggggacacg
     4981 ttttagtaca gcttcaactt tgtcgttaat aactaagaag cggaattcgt cgccaggaat
     5041 gaactcttcg ataataacgg agctatcata gctaaatgcg atatttaaag cttcttggta
     5101 atcttccagc gtgaatttat ttttaaaaat actgataccc cacccgtagt tggtggattt
     5161 tggtttaacg acaatttgtt tatcctcaaa tagggagaaa gcttctagtg caagggcttg
     5221 gtcgctaaaa ctgtcgccaa atggaacgcg aatatcatgt tctgcaagta caagtttagt
     5281 aactacttta ttttccatca ttaaaacgga aacgtagttg tctttggatg ttttgctcgc
     5341 ttgttttaca tactccacat ggtcgccttt ttggaagcga aggaagtttt cggcccggtc
     5401 taatacatcg actttgatgc cgcgcgcgat ggcgtctttc caaatgattt gggtggaaag
     5461 ctccatgtct tctgcgccaa tcaatttgta ggctaaagct tcggtttctt ccatgtaagt
     5521 tttggcttgg tttaaatgga agtcaacgta gccttctttt gttacttgtt gtttcacttg
     5581 tgcagcaatc gttttttcag ggtgtagcag acgttctttt tgtttttcga tgattgcttg
     5641 gagtttggtg tcttctggtc gcaagctttg gatgaaatcg ctcatcttat taagctctaa
     5701 aagcccggcc tctacgacag atatttcttc attatcacaa tttttaaggg caggttgcgc
     5761 gagaccattt agcgcaatat tattttcatt ttcatcggct aattgttggt tgttggagca
     5821 taattcgcga tcttctgaaa gcaaaccttt aattaaaaat aggtgaataa aagcaagctc
     5881 gtctttagaa ataccattcg actctaatgg attcagatca atagagcgaa tttctaaata
     5941 ttccacgccg tgctccgcta aactttcgac tgtttggtcg gtatgcgcat ttttcaaacg
     6001 aatcgggttg taaaattcac gcatactctc gattttccct gcttcgatat agttagagat
     6061 gctagaaata taagcgtcga aagaattgta atcaacgtaa agagcttctt tgtttttata
     6121 accagcatta ctatttcgaa gagaaattcc atcacgaagc gcgctactac cgtccggaag
     6181 ggattcatcg tgcttcgttt tcgagaaatc agcaaggtaa accggacttg cgccagttaa
     6241 ataaataagc aaccagcgat ttttcataaa gtattttgcg acttttaaat atagccgatt
     6301 tttaaaatct tgctttgatt cttctggaag actaattttg tcataaagcc cgtcaattaa
     6361 agcttctggg aatgagaagt tataatgaat gccagataat aattggattt ttttaccgta
     6421 gccttttgct aaatgttcgc ggtattttct gtccgggcta tcaggcgttt tatattcagc
     6481 aattggaata tcttcttcgg ctggtaaaat gggtggattg ctagacggcc aaagtagttc
     6541 gttttctgag cgcaacgaaa cgatattatg aagattttca agccattcat atacagagtc
     6601 aatcgagtcc gttaccgggg taatcatttc aatctgactt tccgaaaaat cggttttaat
     6661 atatgggtta tcctcttttg gaccaaaaat agcgggatgt ggcgtaagag ccaattttcc
     6721 atcagaagtt acgcgaatat tttctttttc taaaccaaaa tgtccagaaa ataaaagctt
     6781 ccggagctta gggtcttctt taaaagaatc aagcatggtc atatcaagtt ttatcatgtt
     6841 ttcacctcag gggttttaaa taagttcata tagggatatt ttaccgcaat atgtgaaatt
     6901 agtataatga ttggtttgta actttttata gcgaattggt agaaaatttt taaaaatgta
     6961 gaaaaaatat tccggagctt atataatgag tgaaagaggt ggaataatga aaattcggaa
     7021 cttaactaaa aagatggacg ataacttggt tttgaaggat gtttcatttg atttaaaagc
     7081 aggggagatt actgcattaa ttggccgcaa tggcgttggg aaaacaactc tattttcaac
     7141 gatgacggga atttatttgc ctgatgaggg cgatgttttc ttaggtgaag agagtatttt
     7201 taagcacccg gaagtgaagc aacagctgtt tttcttggaa gataatatga atcattttaa
     7261 tacatatagt gtacagacgg ttgttaagat atatcgacaa atttatacga cttttgatga
     7321 ggcttttttt aatgaattaa tgcagcgatt tgaactgcca atgaaggcta agttaatgtc
     7381 tttttcaaag ggacggaaag ccttattttt tattatttta gctgtttcac ttaatgttcg
     7441 attcttgctg ctagatgaac cgatggatgg gctagatatc attattaaaa agcagatttt
     7501 agcaacgata aaggacacgg tgaaaaaacg aggaacaagt gtagtgattg cgtctcatcg
     7561 tttggaagaa ctcgaggcta ttgcggatcg agtgattgtt ctaaagggcg cgagcgtgga
     7621 actggattat tatttagaag atatgcggac cgatgcggtg aaaatacaag ttgcatttaa
     7681 aacgaaaaaa atacctgatt ttgtgaaaaa taacgcgcaa ttattgtatc gtaatgggcg
     7741 gatttacacg cttctagtga ctgaaaatgc tagcagtttt cttgccgaat tgcgtttaga
     7801 agaaccggtt ttgctagaag aaatgtcgat ctcgatagaa gacattttca cggtgcattt
     7861 agcaaatgat aaaatagatt attacgagat ttaaaacaga caggagggac aaggctaata
     7921 atgtttaatc gaggtttatg gtaccgagaa tggcgtaata tgagatggat gcttttgggt
     7981 gttgtgatac tatttttctt aggaattact ttgggactaa tgtcagacgc agatagatgg
     8041 aatagtcaaa aagagtacta cgaatcaagt gagtttttaa agcaacagaa agaaaatcct
     8101 gaatttaaaa cttctgatga ggaaatgaaa gctagtttga cagtggcgta tttagcggtt
     8161 ccaatgtata caaattttgt tcaagatgag tttgtagatt acatgccatt tatgttttat
     8221 tttcaagtag aaatgttttt tacattgatt aaggtgagtg tttttatttt aggggttttg
     8281 gcagttattt ttgagcgcta cacaagagcg aatcgtttta cggcatcatt accatataaa
     8341 cggacgcaca tagttggggt taaaatgatg atgggaatag cgaccattgg gctgagttat
     8401 cttatctcga tgggaattgg gttgacatac ttcatgtcgc atgttccaaa agaatatatt
     8461 caattagatg caccaaaatt ttgggtggat atagttggtg gattatttac ttatttactt
     8521 atatttttag tagctatttt aatcggttta ttgataggtt cgcctattgc tgcggctttt
     8581 gtggcatttg gtgtgatgtt actgccgagc gtgttaaatc ctactttaga taacatgtat
     8641 aactttattt ggccgcatgg cggagataaa gggatgtcta aactgctacg atttgaggat
     8701 tatgtgaaca tattttctcc gttttcgttt gagtccgcct cgtttggggc tgtgattttt
     8761 agcgtaatat taagtgtact catggtggtt gctattttaa tcttatataa gaagcagcat
     8821 attgaacgaa gtggttattt atttgcattt tcttgggtta aatggccgtt tttagtgttg
     8881 ttttcgttat ttgttgggat gactgcagct aatttggcag taacagatac agagcttggt
     8941 ttcgttggct atttagcttg gggaattggc gcgacgattg gtagttttat tttagcactc
     9001 tacattttaa acaaaatgcg cgggcttttt caattgtcta aaacgaatta aaaaaatagc
     9061 ttttttatag caggtaagtc cggtataata gaggatagaa tgagcgaggg aggatttagc
     9121 attgacgaca gaaacagaaa cgattaaacc gcagttagct gaattgaaag ctaatttaac
     9181 gaagcggaac ttgcaatatg tgatggaagt agaaaaacat ttgcgagaaa ctcattacag
     9241 cgcagaacaa caagagatta ttgtttatga aatgagcgaa aagattttag ccgaacagaa
     9301 aaaaggcata acagcgagaa aattatttaa tttaacacca acagaatatg ttgtttcttt
     9361 agatgtgaaa gctgctacag tggagcaaaa tacggacaaa tggtggctag tacttgacgg
     9421 tggactcctt gtacttggag cgatgatgct gatttccgga attagtgctt atttccaaaa
     9481 aaacgcgcag actttaggaa ttatcgtgtt attaatcact gcagttgtcg gtggtttcgc
     9541 aatgcttatc ttgcgtaaat acgcttcaaa catgcgtgca ggccaaaaag gtggaacgat
     9601 aaaatactta ctagtagcag ttggagtcat tgcagtgtgg atgtttgtaa tgacgattgt
     9661 acaagtaact attcctccaa atatcaatgt agcgttaagt ccgattgtta acacagttgg
     9721 tggtgcaatt attattgccc tacgtttcta tgtgaagaaa aagaaaaata ttccatcctt
     9781 ataataagat ggacacggac aggtgaccta gattgcataa tgcgagttgg gtcgcctgtt
     9841 tttatttccc gggaaatact gatacagatg aggtgaataa acttatgttt tcgtatgaag
     9901 tgattagaca atttacagag acagagcatc atttataccg gtacataatg gacaatcggg
     9961 acaaagttat gtttatgaga gtgcgcgagc tttcggaagt gacgcacgtc tcgccggctt
    10021 cgattgttcg atttacaaga aaattaggct gtgaaggctt ttcggaattt aaagtgaagc
    10081 taaaacaaga agcgactcgt gaggtaaaga aaaaaaccgc ggatacagtg gaagttttag
    10141 aggaattctt tgaacgaaca atgaaccgtg attatgatca tgtgttagac gcggcggcgg
    10201 agatcatcaa tgaagccgat ttagtcgtgt ttttcggaat tgggacttca gggattttgg
    10261 cagaatatgg cagtcgtttt ttctccaata tgaagaagcg gactttttat attaaagatc
    10321 cattttatcc taacccggga gagcaattta aaaataaagc agtgatgatt atcctttctg
    10381 tgtcaggcga gacggatcag gtgcttgagc aggcgcaaaa tatgcagcag tatggcagtc
    10441 ggattattag tataaccaat acgagccaca atacgctcgc gggcttgtct gatgttaata
    10501 ttccgtatta tgtaactcaa gaaatggttg ataagacgaa tattacgacg caaatcccgg
    10561 tacttttttt actggaagcg atggcgaaga aaaattataa tcaagagcaa gaagaataat
    10621 aaaaagcgtg taggttttca tgacctacac gcttttcttt agcttatttt tttatataca
    10681 tgcacgaact cagtgacaac ttctcttaaa gtttcggttg tgatgagtaa gtcttccgca
    10741 tggattaaaa gtaattggat ttccactttt tcaccggaag cttctttttg gattagctta
    10801 tgatgctcgt ggtgcccatt tgcaagagtt tcgctacctt cttgtagttt tgcttctgct
    10861 tcctcgaaat tgccttcacg agccgcacga agcccttcta agtaactgct tctcgcagaa
    10921 ccaacttggc taatcatgcc aaaaattact gtttccattt cattcatgtc tattttcctc
    10981 ctgtaaaaag tgatacactg cgccgagtag gccagcttgg tttttatgtg ttgctgtttc
    11041 gataattgtg tcacgcagcc caaagctctc catatgatgc tttagctccg tgataaaagt
    11101 agggcgactt gtaattccac caccaataaa gatatgcgtt ggatcgaaca agtaaattaa
    11161 attataaagc cccgtacaaa ttccagtata aaactcagta ataagacgtt ctgagacggc
    11221 gtcgtgtcca tcatacttag caaaaatttc ttcgccagta atctcttcca aagggcgccc
    11281 agtaagttcc gcgtattgtc tgcgaagaac aagcattgtg gtagtctcat ttagcgtata
    11341 tttgccagga cggaaagccc ctggacgttc actaaacata taaccaaact cgccagcccg
    11401 gaaacgacca ccacgaacta atgcgccatt agaaaaaata ccgccgccaa tcccagttcc
    11461 gattgttaga caaagaaaat catccaaatt ttgtccttta ccaagccatt tttcggcaag
    11521 aagggcgcaa ttggcgtcat tttcaatggc aacaggaatt ccggtttccg cttcaagcca
    11581 ttctttcaaa ttaaagttat caaatctacg gatagcgccg cccattgtaa taagtccggt
    11641 ttttgggttc acatagccag gcgcgctgac tgcaattcct gtcacgtccg tattttcagc
    11701 aagaaatagc ttcatttctg ctaaaatctg gtcgccatca ctagcgatta tttcggctga
    11761 ttttgttagt ataatttcac catgcggcaa aacgaccccc attttaaggg ccgttccacc
    11821 gatatcaaaa gctgcaattt tcattttgtc acatcctatt gttccgttga ggctgttgca
    11881 tttttgtcca ttgcagcatc actcgcggca attttgttag atacaagtac gaatggtaga
    11941 taaatgactg tcgcgacggc tagacagagc aagccgacca gaagcgcgag ccagtttcct
    12001 cctgtaccaa gaaatggaat cagtggtcct ggagttgtcc aaggcacttg ataggcgaca
    12061 ggtggaataa gttttgttga gataaagaag taaccaatta atgtattgat tgctggtgta
    12121 atgatgaaag gaataaccat aattgggttt aatacgattg gtaaaccgaa aataactggt
    12181 tcattgatgt tgaaaatccc tggtgcaaga gaaagtttcg cgatatcgcg gtagtctgca
    12241 cgacgagaag cgataaagat agcaatcagt aaacctagag tcataccaga tccgccgtag
    12301 tttgcaaatc cgtcatttag gccagcccat gttgctgggt atggagctcc ccaagcagaa
    12361 ccgtgctgtg ctacgtaaga taagttgtct aagtttggtt cagtgaagat ggtgtcacga
    12421 atagccgcaa cagtgttagg cccgtgaata ccaagaaccc aaagtaagtt agaaacaagc
    12481 ccgatgataa ttacagagaa tacgttagtt cccatgtctt taagtggcgc ttgaataact
    12541 gtgtaaacaa ggtcgtttaa accttctgga gcgattaaag tgattaagta gttaatgaca
    12601 gagaaaagaa tagtgatgat gataactgga attaatactt taaaagaacg agcaactgct
    12661 ggtggtactt ggtcaggcat tttgatcatt aaacgagggg atctagctag acggctaaat
    12721 acttccccag taataatcgc tacaataata gcaacgaaaa gaccttgtgc tcctaagaat
    12781 ttgattgtca tgtaagatgc attgtcaact actgtgtaag gtgtatacac gataaagaat
    12841 gcacctatcg aggtaagtcc acagagcaaa tcatcctgtt taaagaagat ggcgagattc
    12901 cgtgcgacta agaatacgat cagaatggcc ataatattgg tcgaaccttg cattaccggc
    12961 gaaaatacag cctgtgcatc ggctaaatta gggaaaattt tccctaggaa taagattttt
    13021 gcaataaagc catctggtga taatactgcg aagttaatca aagtgataat tgaaccagcc
    13081 ataattaatg ggaaaactaa aataaatgca tcacgaattg ctgcaatatg gcgctgcgag
    13141 ttcaatttat tcgcaactgg tactaaaaca cgttccatgc cgtgttcaaa ttttgacatt
    13201 atactcattt taaaacctcc ctattttgaa tgaatctccc ttaaccaatc tccgcgaaag
    13261 ctttttcaag aacggctttc ccgtttaaca taccataatc tttcatatcg ataacaataa
    13321 caggaatgcg accctgtacg agttcatcta cttgcggttt ttggtaacgg acttgaggtc
    13381 caagcatcac gatatccatt ttgtccacaa cgctgctagc ttctgatact ggtaatgctt
    13441 cgatttcaat ttcttcccca atagaggttg cgtgcgcttt cattttagta acgagtaagc
    13501 ttgtcgacat tccggccgca catacaagta atattttttt cattaaaatt tccctcccaa
    13561 aatggttgaa gcagagagaa caaggcttat ttgccctgtt cttctactaa attagctccg
    13621 tttgcttcga tggtcttttt ataccagtaa aaactatctt ttttatagcg ttttaattct
    13681 ttttcatcgt tttcgtcgcg gtctacatat acgaaaccgt aacgtttttg gtagccgttt
    13741 aaccagctta gtaaatctgt gaagctccaa gtgcagtaac cgagcatctc tacgccgtcc
    13801 gtgattgctt cttggattgc tagagcatgc gcgcgaatgt attcaattcg gtactcatca
    13861 tggattttat ggtcttccgt caagctatca tactcaccaa gaccattttc tgtaatcatg
    13921 attggtaatt tatagcggtt agtaattcta cgtaagccaa tgcgcaagcc agttggatca
    13981 atatcccagt cccaattcgt tttctctaag tatggattat tggtgttttt gtataacccc
    14041 ggtacaccag tttcctcgga agtgcctttt tcgccagttg tattcatttt cccagaacca
    14101 acgccgtctt tcccattaaa tgcatgagtc attgagcggt aatagttaac tcccatgaaa
    14161 tcaggttttc cttttttcag aagctccgta tcgcctggta agatttccgg tgcaagaccg
    14221 tgctcttcta gccagttcca agtagcagtc ggatattcac cccatgtgta aacatccatc
    14281 cagaaatggg cattgaattc ttcggagttt tcagaagcta atacatttgc tgggttagca
    14341 tcgatggagt aacttggtcc ataagcaaaa cttggtccaa tttttccgga tgtacctagc
    14401 tcgcggaatt tagcaattgc agaagcattc gccaagttcg cattgtgatt tgccgcaaac
    14461 atacgcttgt cgtcagaaac gccaggtggg tgatacgcta atttgtaacc gtgtgagata
    14521 aatacgttct gttcattaag tgttacccaa tatttaactc ggccgttaaa gcgttcgaat
    14581 agaagggcag cgtagttagt gaaatcttct acgacttttc gcgactccca tccaccatat
    14641 tcgtcttgaa gcccttgcgg aatatcccag tgataaagtg taacgactgg ctcaattcca
    14701 taagaaagaa gttcatcaat caaattatca tagaatttaa gtcctgcttc gttaacttcc
    14761 ccgttaccat gcgggataac gcgactccat gcgacagaga aacgatatgc ttttaggccc
    14821 tgttcagcca ttagtgcgac atcttcttta taacgatggt aattatccac cgctacatct
    14881 ccgtttgttt ctttgaatgt tgttccagga atacgaacaa attcatccca tacagatggt
    14941 cctttgccat cctcatccca ggcaccttct acttggtacg ctgcagaagc tgatccccat
    15001 agaaaatctt ttgggaaagg tttcaactta ttatgttcca ttatggcacc tccaaaaatt
    15061 atgtgcgatt agtctgtttt agttttgctt gccttattaa tgtaaacggt ttcgactaat
    15121 tggtaaatag attttggtgc tttgggttcg tgtttcatat caatggtata agtttctgag
    15181 ctgaaacgct gtgtttcgtg catgtgattg gaagaacaat tgacatttgg ggaagtatcc
    15241 cttattctat atgtattaat gaaaagaggt gagatgacat gtttcttttg aatgcgcgaa
    15301 ctagtatagc taaatttttg tatattgtcc gtgcaatttt ttccggtatt gcagttacat
    15361 tggcgaagtc tgcccaaaaa actgtataac tagaaaaaat gagagaagca tggagtcacg
    15421 caatcggttt gtatagtgct aaattagtat tatacttata attggcgtcg ggcgcttgtc
    15481 tgacgctttt tttgttgtct gaaaaattgt ttcacgtgaa acaatttgcc atgcttcctt
    15541 ggataaatgg aggataaaat gacaatagta gcaatgaatg atgtagttaa aagttttacc
    15601 ggagatatta ttttagagaa agtatcactt caattagaag aaggtgagcg cgtcggttta
    15661 attggtcgta atggcgaagg gaaaagtact attttgaaga ttttaaaagg aactgagggc
    15721 gttgatagcg ggattgtgac gagcaaaaag ggcgcgaaaa ttgggctttt agagcaatta
    15781 tcgacggtgg atcccaatat aatagtagaa caatatttac gaactagttt tggtgagtta
    15841 gaggagctgg aaaaagaatt acgagcatta gaaggagaaa tggcaacaaa ttccagcgaa
    15901 aaattaatga accgctacgg agataaaatg gctttatttg gcgagcttgg cggctatgag
    15961 atggatgcca atttgaataa agtggtgaat gggcttggta ttggattgct actgtcgcaa
    16021 cgatggggag acttgagtgg tggtgagaag acgaaggctg cattagcgca tttattatta
    16081 cagaaaacag atttattact cttagatgaa ccgacgaacc atttggattt gatggcggta
    16141 gaatggctga ccgcgttttt acaacattat tcgggaaccg tattagttgt atctcatgat
    16201 cgctactttt tagatgaagt agtcgggaaa atggtggagc ttgagaaccg cgaattaatc
    16261 gtttatcata cgaatttttc tggatatttg aaagaacgag aagaacggct attgcgggaa
    16321 ttccaagatt acaaagacca acaaaagaaa atcaaaaaga tgcagcaagc catcaaacga
    16381 ttgcgccagt gggcaatgca agccaatccg ccaaatgatg ccatgttccg aagggcgaaa
    16441 aacatggaac gcgcattaga acggatggaa aaagtaaagc gtccagtgtt aacgcaaaaa
    16501 caaatgcaat tacaattcga tgaagctggt cgaagtggac aagaagttgt ggttatggaa
    16561 aacttaagca agtcatttag cgaaaaagca atcgtacaag atgtttcttt gcaaattagg
    16621 caaggagaac gagtagcgat tatcggtgaa aacggcgccg gcaaatctac tttgcttaaa
    16681 ataatggaag ggaaagttgt tcctgatgtt ggcatgatta aggttggtgc aagtgtgaaa
    16741 atcgcgtcgc tttctcagca aatggaagag ctgaatgaaa agctgactgt actggatgca
    16801 tttcgggata aggttgctgt gacagaagga gaagcacgac aaatgctagc aggcttcatg
    16861 ttttatggag agatggtttt ccgaaaagta gggaacatta gcggcggaga acgtatgcga
    16921 cttaggttag cgcaatttat taatatgcca gtgaatacgc tgatacttga tgagccgact
    16981 aaccatttag atatcgcctc gcgtgaaatt ttagaagaag caattcgagc atttagcggc
    17041 acaattatca ctgtatcgca tgatcgctat tttattgatc agctatgttc taaagtaatt
    17101 tggctggaga ataaacaatt aaccgtttat gaaggtaatt acagttatgc aactagtaag
    17161 cgaagataat cgacttgctg gaaatcactt tcaaaataaa ttagaatgaa gaaaagaggt
    17221 gatggtatgg agataacagt tgtaaaaggt gatattacgg aacaagatgt agatgtcatt
    17281 gtaaatgctg ctaaccccgg acttttaggt ggcggcggag tggatggcgc tatccatcaa
    17341 gcggcgggtc cggatttatt aaaagaatgt caagaggtta ttaatcgcat tgggacttgt
    17401 cctgcgggtg aggcggtcat tacgtctgcc ggcgatttac aagcaagtta cattattcat
    17461 gctgtaggtc cgatttggaa agacggagag catcaagaag cgaataaact ggcatcttgt
    17521 tattggaaag cgctagattt agcggctgga aaagaattaa cttcgattgc atttcctaat
    17581 atttctacgg gtgtgtatgg ttttcctaaa aaactagcag ctgaggtagc gctttatacc
    17641 gttcgcaaat gggcggaaga agagtatgac acaagtattg aagaaatacg ctttgtttgt
    17701 ttcgatgaag aaaatttgaa gttatacaac aaattaataa acagtgaagt cgtttaagat
    17761 aacaatctta ggcggctttt tcaaatgttt cacgtgaaac attttttact atattttctg
    17821 aataaaacaa caacggaaaa ccttcttgac atagctccaa gcttcttgta acatcatatt
    17881 caataactaa aaatatacat tggctatttc agcatgatta tagaagacaa gtcgcatgat
    17941 gtggatattt tccaccattt tttctttatg aaaataagga taagatgatg cgttttttct
    18001 atataaaaaa gcgagtacca ataaaaaagg agtgtttgcg acccatgtgg gaaacaaaat
    18061 ttgcaaaaga aggcttaaca tttgatgatg ttttacttgt tccagcgaaa tcggacgtat
    18121 taccaaatga tgtagattta agtgtagaaa tggctccatc actcaaatta aatgtaccaa
    18181 tttggagtgc cggaatggac acaattacag aagctaaaat ggcaattgca attgcgcgcc
    18241 aaggcggaat cggtgttgtt cataagaata tgagtattga acaacaagcg gaagaaatcg
    18301 agaaggtgaa acgctctgaa agtggcgtta ttattgatcc attttatctg actccagatc
    18361 accaagtttt tgctgcagag catttgatgg gtaaatatcg tatctcaggt gttccaatcg
    18421 tgaacaacga gaaagagcgc aaactagttg ggattttaac taaccgcgat ttacgtttta
    18481 tttccgatta ttctacagta attaaagatg ttatgacaaa ggaaaaccta gtgacagcgc
    18541 cagttggaac tacgctaaaa caagctgagc agattctgca aaaacaccgc atcgagaaat
    18601 tgccacttgt tgacgaagca ggtattctaa aagggcttat cactattaaa gatattgaaa
    18661 aagtaattga attcccgaac tctgctaaag acaagcatgg tagactactt gccgcagcag
    18721 ctgttggaat tacgaatgat acttttgtac gtgtagagaa attaatcgag gcgggtgttg
    18781 atgcgattgt tattgatact gcgcacggac attcagcggg agttattaat aaaatttccg
    18841 aaattcgcca aactttcaaa gatgtagtaa ttgttgccgg aaacgttgca acagctgaag
    18901 gagcacgtgc tctttttgaa gttggcgttg atatcgtcaa agttgggatt ggtcctggtt
    18961 ccatctgtac gacacgtgtt gttgcaggcg ttggggttcc tcaaattaca gcgatttacg
    19021 attgtgcaac tgttgcgcgt gaatttggta aaacaattat cgcagacggc ggcattaaat
    19081 actccggtga tatcgtgaaa gctctagctg ctggaggaaa tgcggttatg ctaggaagta
    19141 tgcttgctgg aacagacgaa agccctggtg aaacagaaat tttccaaggt cgtcaattca
    19201 aaacttaccg tggtatgggt agtttggcag cgatggagca cggttcaaaa gatcgttatt
    19261 tccaagcaga tgcgaaaaaa ttggttcctg aaggtattga aggtcgcgtt ccttacaaag
    19321 gctccgttgc tgatattatc ttccaattag ttggcggtat tcgttcaggt atgggttaca
    19381 ctggctctcc tgatttaaga catcttcgtg aagaagcagc attcgttcgt atgactggcg
    19441 ctggactccg tgaaagccac ccacatgata ttcaaattac aaaagaagca ccaaactata
    19501 gcatttctta aggtcgaaaa agcaggaatc tcttccaaaa gaggtttctg cttttttatt
    19561 tctactataa aaataagaaa gctgcgagaa aacacgaatt tctccaaaaa gcttcaatta
    19621 aagtcataaa accgctatac tgtttctata gaggaggcgt gaaaaaagat aatgatagag
    19681 caagcaagag ctattttaca gcaaaacttt ggttatcaag attttcggaa tggacaagtt
    19741 gacgtcattt cgaaactttg cgcgggagaa gatacgctag caatcatgcc aacgggcggc
    19801 gggaagtcac tttgttacca aatcccagca cttctttttg acggtttgac cattgttgtt
    19861 tctccactaa tttcacttat gaaggatcag gtagatgcgc tagtctcaga ggggattgca
    19921 gctactttta ttaatagtac actgactaat agagaaatag atattcgact ggatgctgca
    19981 ttttcaggtg agttaaagat gctttacatt gctccagaac gcattgaaac gccaggtttt
    20041 cagcgtttaa ttgagcaggt acctatttca ttatttgcga tagatgaggc gcactgtatt
    20101 tcgcagtggg gtcatgattt tcgccctagc tacctgacgc tgtgcgatag tttggataaa
    20161 atgaccagac gtccgctcgt tatcgcgctt actgcgacag cgacgcaggc tgtttcagac
    20221 gatatttgcc gattgctaaa aataggagca gattcagtcg ttaaaactgg attttccaga
    20281 gataatttgg cttttcaagt agtgaaaggg caagataaag ataagtattt gattgattat
    20341 ttaacaaaaa atgtaacgga atccggaatt atttatgctt cgactcggaa agaagtagag
    20401 cggctgcaca ctttcttgct aaaaaaaggt gttgaatctg gtatgtatca tggcggaatg
    20461 accgatttag cacggaaaga ctggcaagag aagtttctat atgatgatat tcgagtgatt
    20521 gtggcgacga acgcgtttgg aatgggaatt aataaatcta atgtgcgttt tgttattcat
    20581 tataatattc cgcgcaatat tgaagcgtac tatcaagagg cgggtcgtgc tgggcgagac
    20641 ggggttccaa gtgattgtat cttgttgttt tccccgcaag atagccgcat ccagcagttt
    20701 ttaattgaac aatccgaaat ggacgatgag cgcaaacaaa atgaattcgc caagctacgc
    20761 caaatgacag ggtatggtta tacggaaatt tgtttacaga aatacatcgt gcagtatttt
    20821 ggagacgacg aggaaaactg cgagaaatgt agtaattgct tagatacaag ggaagccacg
    20881 gacgttacaa ttttagcgca acaagttttt tcttgtataa aaagaatggg tgagcgtttt
    20941 gggaaagtat taattgccaa ggttttgaca ggttctgctg accagaaagt gaaagattgg
    21001 cgctttgacg aactcagtac ttatggattg atgaaagatg cttcccaaaa agatgtgtta
    21061 caactaattg attaccttac agcagaaaaa tatttacaac caactgatag ccaatttcct
    21121 tccttaaaac tgacggatag agccgtttcg gttttacgag gtgagctaaa agtggaaaga
    21181 aaacaagcga aacgggctga aaaagttaaa atagatgtaa atagtgacct tttcgagaag
    21241 ttgcgggaag tgcggcggga actggcagca aaacacaagg tgccgccata tatcattttt
    21301 tcagatgaaa cgttacgtga aatgtgtgca tatatgccgc aaacggaaga tgcactgctt
    21361 gaagtcaaag gcattggtgc gatgaaacgc gataaatacg gtgcagaatt cttggctgta
    21421 ctgcaacaag aggcatcgaa ataaaataga agagagggtt ttgacagatg acaaaaacat
    21481 tagtactggc agagaaaccg tctgtcggta aagatatcgg ccgggtactc ggggctaaac
    21541 aaggtaagaa cggctattta gaaggtggaa aatatgtagt aacttgggcg cttggacacc
    21601 ttgtaacact agctgaccct gagcgctacg attcgaagta taaaaactgg aatatggaag
    21661 atttaccaat gcttccagag aaaatgaagc tagaaccaat caagcaaacg agaaagcaat
    21721 atgaaacggt taagaagtta atgaaccgta cagatataac cacgatcgtt attgcaacag
    21781 atgcaggtag agaaggagaa cttgtagctc gctggattat tgattatgcg aaaatcaaga
    21841 agcctctaaa aagactatgg atctcctctg taacggataa agcgatacgt gaaggcttcg
    21901 aacacttaaa accagggaaa gcttatgaaa atctgtatca ctctgcagtc gctcgttctg
    21961 aagctgactg ggtggtagga atcaatgcta cgcgtgcgtt gacaacgaaa tataacgcac
    22021 aactttcctg tggccgagtg caaacgccaa cccttgcaat gattcaacat cgtgaggaag
    22081 aaattcgtaa ttttaaacca cgtgagtact atggaattac cgcgctaacc gaacaagaaa
    22141 gtttcacgtg gaacaatggg caaacttttg ataaagcttt agcagaaaaa ctagtaaagt
    22201 ctttacaagg ggaaaatgcg gtaatcacag acgtttctat gaaagaaaag aaaaatttct
    22261 caccaggttt atatgattta accgaattac aacgcgatgc gaataataga tatgattttt
    22321 cggcgaaaga aacgctgaat attatgcaaa cattatacga gcgccacaaa gtactaacgt
    22381 atccacgaac agattcgcgc tttatttcaa cagacattgt cccaacacta aaagaacgtt
    22441 tagcggcctg cggggtgggt gaaaatgcaa aagctgctcg tcaaatcagc ggaaaaccaa
    22501 tcaaagcgaa caaatcattt gtagataaca gcaaagtgag cgaccatcac gcaattattc
    22561 cgaccgagca acctgtttcc ctcggagatt taagcgataa agaacggaaa atttatgacc
    22621 ttgtcgtcaa acgcttttta gcagtgcttt cagacccata tatttatgaa gaaacctctg
    22681 ttaaagctaa aatcggccaa gaagaattca ctttaaaagg taaagttgtc aaatcccttg
    22741 gttggaaaag tatttacgga gagtcgcgcg aaccagatca attaactaaa atgaaaaaag
    22801 gcgacactat cccagttaaa cgaatcaatt tagagacggg gaaaacaaaa ccaccagcga
    22861 gatttaacga ggcaacttta ctttcagcta tggaaaaccc atctaagtac atggaaacaa
    22921 cgaacaaggc gctcgccaaa acactgggtg agacaggtgg acttggaaca gttgcaactc
    22981 gtgcagacat cattgaaaaa cttttcaata gcttctcctt agaaaaacaa ggcaaggaca
    23041 ttcatattac ttccaaagga cgccaattgc tagaattagt gcccgaagat ctgaaatccc
    23101 cagaactaac ggcgcgttgg gaacaaaaat tatctaaaat cgcaaaaggc gaactagatt
    23161 atcgtaaatt cactgaagaa atgcgtgact atgcgaaaaa agcagtaact gaaattaaac
    23221 aaaacgataa aaaattccgt cacgataaca ttacttcaca aaaatgccca gactgcggca
    23281 agccgatgct aaaagtgaaa ggcaaacgtg gtacgatgct agtttgtcag gaccgtgaat
    23341 gcggtcatcg tgaatctgtt tcaagaacga cgaatgctcg ttgccctaat tgccataaac
    23401 gaatggaaat gcgcggcgaa ggtgataaac aaatttttgt atgtatttgt ggacaccggg
    23461 agaaactatc tgccttccaa caacgtcgtg acaaacagaa aaataaaaat gtatccaaaa
    23521 cagatgtagc taaattcatg aaaaaacaaa acaagcaaga agatgagccg tttaacaatc
    23581 ctatggcaga agcgcttgcc aaattaaagc tagataaata agaatggaca aagcaaccca
    23641 ctcatattga gtgggtcgct ttgtttgaca tagtctgtcg tatacgaaac aataaaagag
    23701 caatcaatac tgaaaaggag atgtttcacg tgaaacataa tcaattaatt attgaaacgg
    23761 atgtcccagc tgaaatgcgc gatggtgtaa cgctttacgc agatatatat cgtccagcag
    23821 acgcggggga atatccagtt ttacttacaa ggttacctta tagtaaatca tacgggcttc
    23881 actttattcg tcctaatatt ttggcggagc aaggttatgt tgttattgtt caagatgttc
    23941 gtggcagata tacgtcagaa ggagattttg ttccatacat agcagaagtt gacgatggat
    24001 atgatacgat tgagtgggct gcgaacctgc cttatgctaa cggaaatgtc ggcatgtttg
    24061 gtttatctta ttatggttat acgcaaattt tagccgcaat tagcgggaac aaacatttga
    24121 aagccattgc tccaattatg gctcaaaata gcatgacaga tgtttttaat gaccacgacg
    24181 gcgctttaga acttggaatg tgggaaactt ggaatctaga gtccatgctt ccaaacatgc
    24241 tagcccgtac ttataaaacg caagatgaat tagaagaagc agtgaacaca ttaatgaaaa
    24301 atctagacaa tttagacgca ctttatcaat ttaaacctta taaagactgg ccagcaatcg
    24361 gtcaaaatga aatgccttac ttctctgagt tattaaatta tgaaccaaca cataaccatt
    24421 ggcaaaaaat cgatgcaaaa agcaattatg ataaaattaa tgtaccaggt ctccatgtag
    24481 caggctggta tgactgcttt ttagataaaa caatcgctaa ttttcaaaat ggtcacttgc
    24541 gaggtcttgg agataagctc atcattggtc catggacgca tgctaatttc actcagatga
    24601 ttggcgaccg tgattttgga atggcgggca ctaaatgggg agaggcgaat atgcatgcta
    24661 gacatataga atggttcaat cattggctga aaaaagagcc tttaccagca tcagcgcctg
    24721 ttaattattt tgtgatgggg ttaaatgact ggaaaacagc tgaaaactgg cctcctcaaa
    24781 atgcaaatat gacaccatta tattttaaaa atgaaaaagt gagcgcagaa ttcacacctc
    24841 ctacaacatc ttcagaagca aaatttagct atgatccaga aaatccagta ccatcaaacg
    24901 gtggagggac cttacataag gcactaaatg cagatggacc tcgtgaccaa caacaaattg
    24961 aacttcgtga agacgttctt tgctactcaa cggagccact aaaagaagca atcgaagtta
    25021 ccggatcaat tcaagtgaaa ctttgggcca aatcagatgc acctaacacg gattttacag
    25081 cgaaattagt ggatgtattt ccagatggaa cggcttttaa cttagcagat ggcatcatcc
    25141 gggcggccaa gcaacatggc gacaatgtgc aaaataatat taatgaatac actatcgacc
    25201 tttgggcaac aagtaattta ttccaaaaag gtcatcaaat ccgcgttgaa atatcttcta
    25261 gtaattttcc gagatttgat ccaaacccaa atacaggcga taactttatt aattccactg
    25321 aaagccaaat cgccaaccag acgatttatc atagtcctga atttccatca catattcttc
    25381 tgccaatcgt tcgctagaaa ttttggtttt ttgggcgaaa agttttatat acggcactac
    25441 taaatcatgg taaaatatga aagtatccgt caaaaaaatg aaacttattc gaaaagggaa
    25501 tttttatgat aggtttcttt attaaaatat agataaaatg agttaataat ttactcaaat
    25561 gaaggagaag ttgcagtgaa aaacataatt aaaaaaacag ggattgtaat catggcagca
    25621 tcccttgcag taagtggctt cttagtaagc ccgaaagcag cacaagccgc agaagcacca
    25681 aatgtaaatg caaacgcagc aatcgcaatt gaagaaagta ctggtaaaat tttatattca
    25741 aaagacgctg acaagctaat gggcatcgca tccatgacaa aaatgatgga cgaatactta
    25801 ctactggaag caattgacaa aggacaaatt aaatgggacg acaaagtaac catttctgaa
    25861 tatgcttaca aagtttcaca agacacatca ctatcgaacg taccacttag acttggcgaa
    25921 gaatacactg tacaagaatt atatgaagca atggcgattt actctgcaaa cggagcagca
    25981 attgctattt ccgaaaaaat tgcaggttct gaaaaagaat ttgtcgatgc tatgaataaa
    26041 aaagcggacg aacttaatct aggcgagcac caattcgtta acgctacggg ccttaataac
    26101 gaagacttaa aaggcggtca gcaagtaggt ggaccgaaag acgaaaacaa aatgacagct
    26161 cgcggcatgg cgaagttagc aaaacactta ataaatgatt acccagatgt acttaaaacc
    26221 gctagtacaa ctaagaaaga gttccgaaaa ggtacatcag accaaattga tatgacaaac
    26281 tggaactggt tattaccggg cttgatttac gggcgcaaag gtgtagacgg tttgaaaaca
    26341 ggaacaactg attatgctgg aatgtgcttg actgcaaccg ctgtacaaga tggaatgcga
    26401 gttatcacag tcgtactcca tgcaaatggt ggagcgcctg gcgagcatac aagtgctcgt
    26461 tttgatgaaa caaacaaaat gctcgattat gcttttaata atttcaaagt aaaagaagtg
    26521 caaaaagcag gatcaaaagt aaaaaatcct tctacaattg cagtagataa aggaaaagaa
    26581 gatacagtcg gactagttac aaaagatgca gtgaagctag ttgtaccgaa gaatggcaat
    26641 gaacctaagt taaatacaaa ggtaacaatg aaagaaaaaa caatagaagc accagttaaa
    26701 aaaggtacgg aagttggtaa aatggaagta tctctaaaag atggcgacaa gttaggctat
    26761 gttgacggaa aacaaacaga aacaattgac gtactaactg ctagcgacgt tgaaaaagcg
    26821 aactggttca tgctctccgc acaagcggta ggttctttct ttacaggcat tggtaattac
    26881 gtttctgatg gtgtaaaagg gtggtttaat taacagtaga acaattgtag taccgatata
    26941 aataaaagag tcgatttcct gaattaggaa atcgactctt ttattggcta actttagttc
    27001 aatggatttc tttcgcggta tttaacaagt tctaagaagt agctttgtct gcttctatga
    27061 gctatcgtat caaggattaa tccacaaatg aagaacagca tacccattat gattaaacca
    27121 gttgcaagta atgcactcgg aaattttagt accaagccaa tttgagcaaa ctgaattatg
    27181 actggcaaac caactagaac tcctacaagc acaaacaaag aggctaataa attgaaaaat
    27241 aaaaacggac gactattttt aaataatctt acaatcgtca taattacttt gaaaccatca
    27301 gaaaaagtgt ttagttttga ttcactacct tctggacgat cacggtaatc aatttcaatt
    27361 tctttcacta aaaagcgatt ttccaatgcg tgaatgctca tctcagtttc aatctcaaaa
    27421 ccagggctta aaactggcat agtcttaaca aaataacgat caaagccacg gtagcctgtc
    27481 atgatatctc tcaaattact tttgaagata cgattaattg tattacgtac tagtgagtta
    27541 ccaaagtcat gaaaatttct tttattttct tcagtgtagg taccattact cagacgatca
    27601 ccaataacca tattagcttc cttattgcga agcacctcta atatttcatg gcagtattct
    27661 gctggatagg tatcgtcacc atcgaccatt aaatagtaat cagcatctat atccgcgaac
    27721 atagaacgta ctacattacc tttaccttgg cgcatttctt ttcgaacgat agcaccatga
    27781 tctttcgcta tttcaaaggt tttatcttta gaattattgt cgtacacata aatatccgca
    27841 tttggtaatt ctttcttaaa atcatcaatt accttaccaa ttgtaagctc ctcgttataa
    27901 caaggcaaga gtacagctac tttctcattt agaattccca ttattctctc cttaaaattg
    27961 attttctttg taatttttta atttagttgc aaaaaagaca ataggcacgg tgaaaataaa
    28021 actataagaa tatctaaagt ctgttgctgg cattgcgatt gctatagtaa taagtgccat
    28081 tactacaggt gcaaaaataa gaagtttctt tttaggacgt tggaggcaga cggcagcaat
    28141 tgctattatg agcaatacta atggaatggc tccttttaat aaataatttt gccactcatt
    28201 tgttgttttt gcataaatgc tatctgttat tttcttcaga cttggagctt tagatattga
    28261 aataagtgga ttagtagagt catcaatccg tctcttatac tcattgtagc taacagcatc
    28321 ttttccagtt gcatttttgt attcattttg atagacttca tatcctaatt tattaatctc
    28381 ttcttccgat aaaccttctg ggaagaattt ggcgaatgct ctcacatcat atcttgtatc
    28441 ttgaatattc gctgaagtat caaagaatac tttataattt tctggagaat agaattgcca
    28501 aatgactgct gtttgatcta aataagcccc tacataagta ccgaaattag ccgttaagag
    28561 tttgaaccaa tttttaatgt atagtccaaa atcatcttca atgacggatg aattgtattt
    28621 ggtatcatgc ttaattgggt ctacagtata agggttgtaa tcttttttcc aattttcttc
    28681 aggtaatatg gaagtgaaat actcttttaa ttcaggagta aagtttccat cattgtaaaa
    28741 agtagcccca atttgttggg aaggaattgc tagcgcttgg tttaatggat taggttgcgc
    28801 attaagcccg tttgtcataa ccagaccaaa taaaaaattc agtcccaagg ttccaacaag
    28861 aataccggta ataataagac gaaagttttt catgaaaata agcaagcaca gaagcgatac
    28921 gatgataatc atcattccat tgtttcgtaa atttatacaa acaaaagcta ctaaaacaaa
    28981 agcgataagg tgccaccaat ttttcagcca cattccatta gattgtacta tttttaaaat
    29041 taaaacggtg aaaagtaata taaaggctgc aaatggaaaa tctttccatg ctgttgcaga
    29101 ataaaacatt gctgcagggt aaatggcata gccgattgaa atacaaacac caatccaaat
    29161 atgcgcgccc atttttacaa gagtataaat agcaaagcca acgattaatg aaacaacaat
    29221 tatttgagaa aaaatgtaac tcgaaggtga gtcgtaaatc gcacttgttg tttctatcca
    29281 caaagtgtgt aaaagcggat gccactgact atattggcga ataccgtgag ccattcccca
    29341 ttggtaatag gagtcaaatg tcatttttgc tggataatag gctagaaatg aaatcatcca
    29401 gaccacgaat ggaatactcg taaatagtgc gaaaaatggc cattttactt tgcgattcgg
    29461 tcttgcttta tattccgttc gcatttcaag taataaaagt aaaacaaaga tagtgattac
    29521 aagaaaagtt cctgctaaaa taatactatt aaaaacaaaa ttcccgccat atggtccacc
    29581 attgaatgat gaagccatcc aaaataaact aattattagt gaggttatca atgttgacca
    29641 ttgaaattga aagtttttct cttgtctaaa ataaagaacc gttaaaacta ctgcaaataa
    29701 caaccagctt aaagttagtt taaaggtttc tgaataatag ctaatagaaa ttaaacttag
    29761 taatagtagc aaaaccccaa ctataactct ttttttattt aacactcttt ttctccactc
    29821 cctatatgag acgttactat cctttaatat agcaaaaaaa agatgctagc gcaattgaaa
    29881 tttaaagcga gcccttactt gaaaaagata aggactcgct ttaaatttac tagttagaca
    29941 acgttttgcc tgccagataa atcactcttt ggaagagtga ttatttattc aataacaaac
    30001 tgattatgat aaagctcaga ataaaatcct tccgccttca tcagctcatc atggttacct
    30061 tgttcaatca cttcaccttg atgtagcacg acgatatggt cggcatcgag gatggttttt
    30121 aaacggtggg caatgacgaa gctagttcgg ccagagatta cgttgtccat agctttttgg
    30181 atgcggcttt cggttacggt atctacatta cttgtcgctt catctagaat tagaagagac
    30241 ggatttgtaa taatagttct cgcaatactc ataagctgct tttgaccaac gctgaaaata
    30301 ttgttttcat cactgatttc tgtttcataa cctttttcta ggttcataat gaagtcgtgg
    30361 atgttagctt gttttgcagc gttgattact tcgtcgtcgc ttgcttccgg cttaccgaaa
    30421 acaatgttat cacgaatggt tcctgtgaat agcacggaat cttgtagcac gataccgact
    30481 tgtttacgaa gggaatctag gcgaatatcg cggatgtcga tatcatcaaa gagaatcgcg
    30541 ccaccatcga cattatagaa gcgattaaga aggttcataa cagttgtttt accagagcca
    30601 gttggaccga caagagcaac cattttacct ttacttacat caatcgaaac gtcttttaga
    30661 actggttttg cagggtcata agcaaaatct acgtgatcta gtttgacacc tttattaata
    30721 ccatcaattg tttgtaagtt ttcgcgttct acttcttctt cctctgcaaa tacttcacta
    30781 acacggcgcg caccagtgat tgctagttgt agcaagctgt actgggacga aatttgtgta
    30841 agtggcatat agaattgttg tgaatattga acgaacataa cgattaaacc aagagcggct
    30901 gtgcgttcaa ggtcgccgtt tagagctaac catccaccga agaagataac aatagctgta
    30961 tttaataggg aaataccttg catcattggg aaaagtaaac cggagtaaac ttgacctttg
    31021 taagttgcgt ttttaacgat attgttttgt ttaacaaagc cgtcaattgt ttcttcttct
    31081 aagccatttg tgataataat tttttgacca gagatttttt cgtcaatgta gccgttaagt
    31141 acgcctagtt catcttgttg aatatcaacg aatttgcggg cttttcgaat aatcactgtc
    31201 gcaataataa tcgcaaatgg agcagatatt agagtaacga aggctagttc cacgttttgt
    31261 tggaacatca tgatgataac accaatcatt agcgcgacgt tggatagtac ttggatcaat
    31321 gcttggttta gtgtgttgga aatattatct aagtcactag tgaaacgact aagcatttcg
    31381 ccatcattgc gactatcgaa gaaacggatt gatagttttt ccatcttgcg gaaaagtcct
    31441 atacgcattc tgttcgtcga tttaccagct acccctgtca taatgatact ttggataaaa
    31501 gtggcagcag cgaggagtac gtagcagaga atcagcatcc aaatgatatg gatgaagtca
    31561 ctcttgtcat caacacccgt ttgcattaaa ttaacaacgt aatctccaag ttcttgaacg
    31621 gcgttaccaa tatattgtgg tgcttttact tgaaggtatg tcgcaaaaac tacagcaatt
    31681 aaaatgacaa aaagttgagg tttatacccc cgcagatagt gccagaaaaa gcgactaatt
    31741 tgtttaaact ctttcattat gcggttacct ccttgccttt ttgagtgtcg taaatttcac
    31801 ggtaagtttc attttctttt agaagttctt tatgggaacc gacgccaacg agtttacctt
    31861 tatctaacac gagaatttta tctgcttgaa taacagaaga gattttttgt gcaatgatga
    31921 aagtcgttgt gtcgtctagc tctttattca gcgcttcttt cactaatttc tcggattttg
    31981 catcaagcgc gcttgtgctg tcatcgagga ttaggacttt cggggaaccg ataacgccac
    32041 gtgtaatcga aaggcgttgt ttttgtccac cggagaagtt gtttccacgt tcggaaacag
    32101 gagcttcata aagttttgct tgtttgtcga taaactcttt cgcttgtgct attttacttg
    32161 cgtgttccat ttcttctgca gttgcgtctt ttttaccatg acgtaaattg tctgcaattg
    32221 ttccggaaaa aagaatcgcg cgttggagca cgaaggaaac agtgctgcga agcgtttttt
    32281 tgttgatatc ttttaggttc gttccgccga taataacttc accttccgtt gggtcgtaaa
    32341 gtcgggggat tagttgggca agagtggatt taccagaacc tgttgcacca acaataccga
    32401 ccatctcacc aacacttgct ttgaatgaaa tatcttccag agcaggcgta tcgtcaccgt
    32461 cgtatttgaa actaacgtta cggaattcaa ctgtaccttc taaatcttgt tctggcgcgc
    32521 tttcattgta agtaatatct ggttctgttt ccagaacttc ggtaatacgc ttcaaagaaa
    32581 taagcgcacg agaagccatc atcatcagca taccaccaat aataattgcc atcataattt
    32641 gcattaagta gttcatgaat gatgcgatag ctccgataac ttcaggatta tctgcagcca
    32701 tatcgcctac aaagaaaata gaaacaacaa ttgctaagtt agaaacgagc ataaatgcag
    32761 gaatcattac agagaaaagc gttccaacga tgattgtgtg gcgagttaat ttgtcactga
    32821 cagttgtaaa gcgactgatt tcattatctt cttgcacgaa agatttaact acgcgcatgc
    32881 cagcaaggtt ttcttttgca atagaattca ctcggtcaat taacttctga ataatggcaa
    32941 aatgtttacc catagacccg aatgtgaata caacaatcag aacaacaaga acaacgagta
    33001 caataattac ccaccataat tcaggtaaag taaacatcgc taaaataaaa gccccgatga
    33061 acataatcgg aattctcgta agcgattgta gtgaaagcat cactaagttt tgaacttggg
    33121 taatgtcgtt tgtttgtcga acaactagat tacctgtcga aagtttttcg atgttgctga
    33181 atgaaaatgt ttggatttta cggaaactag attcacgaat atctgcaccg acgccttgag
    33241 cgactttggc tgaaagtatt gtgtttagga tcccggcgat aaggccgact gcggcaatac
    33301 cgattaaaag tgcgccgatg gatgagattt catccatatc atctttcatg atggcgtcta
    33361 ggacttgctg aagtaacttt ggttgccata gttgtgagat aaccatgact actacaaaca
    33421 gtgtagatag tgtcgcttgt agcttgtatt tttttagatg gtgaaacaat actttcatga
    33481 ttttcctccc ttggaaaacg gaaataaaaa cgtgcgaaca catattctaa tatagattgt
    33541 gaaaatttgc aagtaatttt ttcacaaatt ataaatgtgg cgaaaatatg gcgaatttga
    33601 caaattattt catttttaaa ttgtgaaatt tctattcttt tattgtttga tttctacttc
    33661 tataaatcct cttacgctat taattaacca cacatagtcc gcttctaaaa ggtctttttt
    33721 tgctagtgtt ttctcggaaa tcttattttt agctaatagt tctgctctca ttgtccctga
    33781 aagaagacct gaagttactg gtggcgtgaa aaaacagcca tttataccta gaactatatt
    33841 cccgttaata aattctgtca gttcaccccg ttcattccaa agtagtgttt cctcggtttg
    33901 agtatttttt aagttttcat agacctttcg atgagtcgtt ttatgataga gaaataaatc
    33961 attcgaaggg actggtttat cagcaagttg cgctgttatt cgcttgtttt ttgtatcaat
    34021 tcttgttagt tctagatcat gtgcgccatc aggatgtaat aaaaagcgca ttttgtatgt
    34081 gtcggtcgta tttttttgcg cagttttggt ccatagtttc tctgtttctt ccctattaaa
    34141 aggaataccg aaaaagtctg cgcttgtttg tagtcgtttt aaatgatatt cggttcggaa
    34201 aagctcacca ttttcaattc gcaaacattc aattaaagaa aattttgtcg tcttttctaa
    34261 aatagctgat tttgcgtgga tttcggaaaa ttcgctagcg gcttccgaat cccagacgat
    34321 accgccacca acaccataag ttgccttgtt gtctgcgata gcaatagtac gaatcggtac
    34381 attgaaaatc gcatttccgt taggttctaa aaagccaatt gctccgcagt aaacaccacg
    34441 aggagaatct tctagttctg aaataatttc cattgttcgt gctttaggcg caccagttat
    34501 tgagccacat gggaagagtg ctttaaaaac agctgttaaa tcagtctcag gaggtgtttc
    34561 tgctgtaacg gttgaagtca tttgccaaac agttgggtaa ggttctagcg tcattaactt
    34621 aggaaccttg acactcccgg gtacagcaat catcccaagg tcgttccgta gtaaatcgac
    34681 aatcatcaca ttttctgcac ggtttttagg atcgtttttt agccaatcat gtgcttctaa
    34741 gtccgcttgc tccgttattc cgcggcgaat agtacctttc atcgggcgtg tcgttagaag
    34801 attttccttc catttaaaaa agagctcggg tgaagccgag ataatctcaa agtcactggt
    34861 tgaaagtagg gcggtgtaat tcgcctttcc aatctgctgt aacgtttcat aagtcgcttg
    34921 agaagaaaag ctgtttggca catcactttg aagtcgcacg gtgtagttta tttggtaagt
    34981 atttccagct gcaatttcag ctttgatttg ctctattttc tcggcgtatt cagggaaact
    35041 agtattcatt ttaaaagaga gcggcgagga atctggtgtt tcggtagctg tatcgttaaa
    35101 attatcgtat acaccaaacc agacgagggg catgtttccg ctcggttttt ttgtttttaa
    35161 attacttcga aaagcaggcg cggcctcata actgacaaaa ccggcgacgt attttcctga
    35221 tttttgggct tcttcggctg ctttcattat aggaagaact tctgctaaat catgcgtaac
    35281 tagttcatac agtggatttt caaaaatttt tgtgtcgcct tcaaaatcaa atcgtaataa
    35341 gctcatttaa catttctccc taatcgtata aagttttcaa gtattgcatg tccgttttca
    35401 gataggattg cttctgggtg gaactggacg ctgtgaatcg gttttgatac gtgagctagt
    35461 cccattataa cgccgtcttc tgtcagtgcg gttactttta aattagcggg aactgtggca
    35521 ggatcaataa ctaaagaatg gtagcgcgtt acttggaact ttggtgcaag ctctgcaaac
    35581 aacccttccc cagtatgcga aatgatactt gtttttccgt gaaccgggac ttttgccggc
    35641 accacttttg ccccgaaaaa atgaccaatc atttgatgac cgaggcaaat gccaagaata
    35701 ggaacttgaa ttttacctag tagtgccaaa cttacaggga agtcttccgg tgaacctggc
    35761 cctggtgata gaactaccat ttcgggaacg agttgttgaa atatttcaag cgaaaaatta
    35821 gtagcagaaa caacctgtac ctcctcttga agctctaaaa aatattggta taaattatat
    35881 gtaaatgaat cattatggtc gatgattaaa atcactttaa atccccctag ttaaaacggt
    35941 tatactcttt tatagcaaat agctagagag ataacaagcc cgaatgttta aagccgggag
    36001 ccgagtggaa aggtacacta aataaccaaa ggaaggtgtt tgagatgaaa aatgaactag
    36061 aagataagat tcttgccatt ttggaacaac atcaagtggg tgtattaaca tccgtacaag
    36121 gagactatcc tcatgctaga tatatgacgt ttctgcacga tggtttaacc ctttacacac
    36181 cgtctggcaa agaattacca aagacagaag aagtacgtag aaacccacat gtatccgttt
    36241 taattggtta cgaaagccca gggtctgcgt ttttagaaat taatggtttg gcttctcttg
    36301 aagaagatga atcaatcaaa gaacgcattt gggaaaacat ttctaaagaa tggttccaag
    36361 gcgaagattc accgtccttt gtcgttataa aaattgtacc tgaacaaatt agaatattga
    36421 attctgatga tgacggtcca gacacgctcg atttaatcgg ttaaagattt gcttgtaatt
    36481 taagcagata tgcgatagaa taactttaaa ttaatacgaa aagcgaagac aagaagtagt
    36541 aatgaggcag aatttctaaa gagagccagt gggtggtgtg aactggtgaa gtttccttat
    36601 gaatccatct tggagtgagt ggtggaaagc ataattttgc gagtaaatca ttccggttgg
    36661 gtccgttaaa cctaaatgaa gctggggatt ttttgaagtc ccaataaggg tggcaacgcg
    36721 gttaactctc gtccctttcc tgttaattcg ggaaagtacg ggagttttta tatggaaaaa
    36781 ataaaggagg agttagcatg ttagatgtta aattgttacg taataatttt gatgaagtaa
    36841 agcagaaatt acaaaatcgc ggggaagacc ttggtgaatt cgagaaattt ggtgagttag
    36901 ataaacgtcg ccgtacgcta atcgtggaga cagaagcgct gaaaagtcag cgtaatgaag
    36961 tgtctcaaga aatcgctaaa ttaaaacgcg aaaaacaaga cgcagatgct aaaattgaag
    37021 agatgcgtgt cgttggtgat cgtattaaaa cattagacat cgagctaaga gaaatcgacg
    37081 agaagttaga tatgatttta atgtcgattc caaatattcc gcatgagtct actccggttg
    37141 gtgaatcgga agacgataac gtggaaattc gcaagtgggg cgaagtacgc gaatttgatt
    37201 ttgaaccaaa agctcactgg gacttaggaa cagacttaga tattcttgat tttgaaaatg
    37261 ctgcgaaagt aactggtagc cgttttgtct tttataaaaa attaggtgca agactggaac
    37321 gggcgctaat taactttatg atggacttgc actcgaatga acatggctat gaagaaatgt
    37381 taccaccgta catggtgaac cgtgcgagca tgactggaac tggtcaattg ccgaaatttg
    37441 aagaagatgc tttcttaatt gaagcagaag attatttcct tattccaaca gcggaagtac
    37501 cagtaacaaa ctaccaccgc gaagacattt taaaagcaga agatttacca agaaaatata
    37561 cagcatttag cgcatgtttc cgttctgaag cgggatctgc tggtcgtgat acgcgcggct
    37621 taattcgcca gcatcaattt aacaaagtgg aattagttca atttgttaaa ccagaagatt
    37681 cctacgcggc gcttgaaaaa ttaactggaa acgcagaaga agtattgcgt cgcctagaat
    37741 taccatatcg cgtattaagc atgtgtacgg ctgatttagg cttcactgct gctaaaaaat
    37801 atgatttaga agtttggatt ccaagctata attcttaccg tgagatttct tcttgcagta
    37861 attttgaaag cttccaagca agacgcgcta acattcgttt ccgccgtgaa ccagggagca
    37921 aaccggaata cgtgcataca ttaaatggtt ccgggttagc actaggtcgt acagtcgctg
    37981 ctattttgga aaactaccaa gatgcagatg gttctgtacg cattccgaaa gtattgcaag
    38041 gctacatggg cggtatcgag aaaatagaat taccaaaata atatggaaga aggaactgta
    38101 atggcgaacc ttagcgaatt accaaacatt ggcaaagtac tggagcagga tttaatcaaa
    38161 gcgggaataa aaactcccgt cgagctaaaa gatgttggaa gcaaagaagc ctttttacgt
    38221 atttgggaaa atgattcaag cgtttgtcta agtgaactat atgcgcttga gggagccgtt
    38281 caaggcatca ggtggcatgg tttagacgaa gcaaagaaaa tcgaactcaa aaagtttcat
    38341 caatccttat agaaaaagcg acgatgcata ttcgcatcgt cgttttttta tttcccggga
    38401 aatagttatt ttaattgttg ttctgcaaag gaagcgtaaa gtggatggga agcaactaat
    38461 tcactatgtg tgccacgacc agttatttcc ccgtgttcaa taaagagaat ttggtcggca
    38521 ttgacgatag tagaaaggcg atgagcgata acaaaagtag ttcgaccttc cattaagttt
    38581 gccaaagctt gttgaacgat ttgctcggat tggctatcta aactagctgt agcctcatct
    38641 aacataagga tattaggatt acgcaagaat gctcgagcaa tggcaattcg ctgtctttga
    38701 ccacctgaga gcttcacgcc acgttcgccg acttcggtcg ccattttgtc aggaagttcg
    38761 gaaataaagc cgtcagcata agctagtttt gctacattcc atagctcatc ttccgtaatt
    38821 tctcggtcca aaccataaca aagattatcg cgaattgtac cagaaagcat cgcactttct
    38881 tgggagacat aaccaatttg tgttcgccag gaattgatcg aaatctcgga aaggggaata
    38941 tcgcctacta aaatttctcc cgttttcggt tgataaaaac gctctaaaat cgcaaataag
    39001 gttgatttac ctccaccgct tggaccagcg aatgcgataa cttctccggg ttttgtatca
    39061 aaagaaacat gttttagaat aggctcacct tcattatagg agaaggaaat atcagacgcg
    39121 cgaatggttt ttccgctcac atctactttt ttaccagcgt cgaaatcttc ttctgtttca
    39181 ttcaaaatat ccgcaattcg ttctgttgcg ccttttgctt tttgaagttg ggcgaagaat
    39241 gttgcgaaag aagtgacagg aacgataatt tggaacagat agagcaaaaa ggcgatgagg
    39301 gtaccagtag tcatcgttcc agctgaaaca cgaatcccac cgtaaccgat gatgccaacg
    39361 ataaccccca tgacaacaaa gaaaattagc ggtccaagca cagcaacaac tttcgcctca
    39421 cgaataccaa agccaaatag gcgattaatt ccttgatggc cagcctcggt ttctagtgtt
    39481 tccgcattcg aagcctttac gagcctagct tctgatagcg tttggctaat ggaaccagtg
    39541 aagtcagccg tttcattttg aagaccttta gatattttaa acattttctg accaagtggt
    39601 gcaacaacta gcgcagtaat cggaacggcc actaaaataa tgagtgtcat tttccagtcc
    39661 atgaagaaca aaataataat cgccccgaca acagaaatta tcccagttac aaattgcgga
    39721 aaatggtcgg caatcagctc cttcactacc actgtatcat ttaccatgcg acttaccatt
    39781 tccccagtct ttgtattatc aaagtaagaa accggtaaat gcacaatttt cttccataaa
    39841 cgttcgcgaa tcgttgcaac gactttctga cccatgtagt taagtaagaa aatcgagaag
    39901 ccattcgtta tagcttgtaa aacaaatgcc aacacaatta aagcaatcat ttttacatcg
    39961 agtgaagcta ttgaaaagcc atcaattaag ttctttgtaa aaagtggcac aacaaggccg
    40021 gcaactgtag ttatcacact ggcaaataaa gcgcagaaaa ttatccaatt cgcaggtttt
    40081 gcgctaataa gtaattggaa aaattttcgc caactatatt ttttctgatc cattcatttc
    40141 acccttcctg agttacccat ccataaatta cttacttttt aagtataatc aatttatcta
    40201 aaaataaacc agtctaaagt g
//
LOCUS       DASEAA010000006        39883 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.006, whole genome shotgun sequence.
ACCESSION   DASEAA010000006 DASEAA010000000
VERSION     DASEAA010000006.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 39883)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 39883)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..39883
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.006"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(65..1576)
                     /locus_tag="U0342_000261"
     CDS             complement(65..1576)
                     /locus_tag="U0342_000261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomannomutase/phosphoglucomutase"
                     /protein_id="HEM2421643.1"
                     /translation="MNQSETKALEALQNGSDIRGIAIATEKYQITLTDERVEKIAYGF
                     AKWLKEEKKVEGQAKVAIGHDSRLSAERLKAALVKGLTFAGINVVDVGLATTPAMFMA
                     TQYEDYDCDAGIMITASHLPFMYNGLKLFTKSGGAEHEDIDYIVAHADKSFIENGLNL
                     GKVTKQDLLSTYAADLTDKIRAGITDAADKMKPLLGSHIIVDAGNGAGGFFAEKVLAE
                     LGADISGSQFLDPDGNFPNHIPNPDNEEAMASLKKAVLASGADLGVIFDTDVDRAAIM
                     DKNGESLNRNPLIAVISSIILEEKPGTTIVTDSTTSGHLQTFIEAKGGKQHRFKRGYR
                     NVINEALRLNADGTPSEIAIEVSGHAALKENYFLDDGAYLIAKILMTYATLRKNGKDL
                     PDLIADLREPAESEEIRLSITATDFKAYGKEVLADFLTFVEADPDMELEPVNQEGIRV
                     NTKGALGEGWFLLRMSLHEPVMPMNLESDEAGGIRKVKNRLAGFFASKAELKM"
     gene            complement(1645..2520)
                     /locus_tag="U0342_000262"
     CDS             complement(1645..2520)
                     /locus_tag="U0342_000262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM2421644.1"
                     /translation="MLSKMEINKRALKENMALLACPICGEAFEFKEPQSFVCLEGHGF
                     DIAKPGYVHLLKQAHKTKYDQALFESRKKVIASGFFEKLIERVTEIIAEKKKEQLVLY
                     DAGCGEGSHLARVVSNLQATGVNVQAVGLDIAKEGVKQAARDYPGTSWTVADLANCPN
                     QAETADVILNILSPSNYVEFKRLLKKDGFLLKVVPEANYLRELREFIYVDEKSSYSNE
                     SVTSRLAEKLSVEHVERVTYKAPIAKELFADFLEMTPLGWHIEADKKSELLGNPPEEL
                     TVDLQIIIANRAHLL"
     gene            complement(2573..3055)
                     /locus_tag="U0342_000263"
     CDS             complement(2573..3055)
                     /locus_tag="U0342_000263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM2421645.1"
                     /translation="MIIFVWAQDRAGNIGKDNKMPWHLPGDLQFFKKTTTGKTLVMGR
                     KTYESLGKALPNRKTIVLTRDQGLKLDDAEILHSKEAVLALAETGEPIYIVGGAEIYR
                     LFMDVADQLIVTKIDAEFEADTAFPEVDWENFSEVAKEFHEKDEKNKYNYTFYTYERN
                     "
     gene            complement(3071..4015)
                     /locus_tag="U0342_000264"
     CDS             complement(3071..4015)
                     /locus_tag="U0342_000264"
                     /EC_number="2.1.1.45"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidylate synthase"
                     /protein_id="HEM2421646.1"
                     /translation="MKQYLDLEKYVLENGTQKGDRTGTGTISTFGYQMRFDLQEGFPI
                     MTTKRVPFKLVVSELLWFLHGDTNIRYLLQHNNNIWNEWAFERFVKSDDYKGEDMTDF
                     GLRAERDSAFKEVYQAEMEKFKARILEDEAFANKYGELGNIYGKQWREWKTSQGETID
                     QLADLIEMIKTNPNSRRLIVSAWNPEDIPNMALPPCHSLFQFYVADGKLSCQLYQRSA
                     DIFLGVPFNIASYALLTHLIAREVGLEVGEFIHTMGDAHLYNNHIEQVKEQLSRTPHK
                     LPKLVLSDKPATIFDFDVADISLDGYNPDPAIKAPISV"
     gene            complement(4028..5920)
                     /locus_tag="U0342_000265"
     CDS             complement(4028..5920)
                     /locus_tag="U0342_000265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM2421647.1"
                     /translation="MKQLKVENLTKTYGGKSLFENISLTITEGERIGLIGVNGTGKST
                     LLQIISGSESGDKGTVTKAKDYTIGYLAQDPEFNEEDTVLSAVFDGDTAALRAMRKYE
                     EVLLAMSLDAENTKLHDAYTAASQEMDASAAWDMNTEAKTILERLGITDLTAKISELS
                     GGQRKRVGLAQVLIETPDLLILDEPTNHLDFQSIRWLEEYLNRFKGAVLLVTHDRYFL
                     DRVTNHMVELDRGSAYRYVGNYEKFMESKAIRMENEVRESEKNKNLYRKELAWMRRGP
                     QGRATKQNARQDRFHDLEKKVKTKTDDSELAIDFVTSRLGKDVFELKNLEKRFDEKQV
                     LQDFSLIIQPGERLGITGNNGTGKSTLLNMLAGKLAPDAGEVVTGQTVQIGYYTQQNE
                     EMDPDMRMIAYLQEAGEQVTTSGGEVISVSAMLERFLFPPNSHGKKIGSLSGGEKRRL
                     FLLRILMERPNVLLLDEPTNDLDTQTLTVLEDYLESFNGTVITVSHDRYFLDKVVNKL
                     LVFRAIGEVEIFYGEYSDYLKELEAKAKPAKSMKKMANTSVEKAAPEKKEKVKLTYQE
                     QLEWDGIEDAISELEQTIESLNETLEQTGADFTKAAEISELITAKETELEQMMERWEF
                     LSQYAE"
     gene            complement(6040..7722)
                     /locus_tag="U0342_000266"
     CDS             complement(6040..7722)
                     /locus_tag="U0342_000266"
                     /EC_number="6.3.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009928213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate--tetrahydrofolate ligase"
                     /protein_id="HEM2421648.1"
                     /translation="MSNKVKSDIEIASKAEILPVTTIAEHLGLDADALELYGKYKAKL
                     SYDTIHSLKDKEPGKLVLVTAINPTPAGEGKSTVTVGLGDALSKKDKKTVIALREPSL
                     GPTMGIKGGATGGGYAQVIPMEDINLHFTGDFHAITAANNALSAFIDNHMQQGNDLDI
                     DGRRIVWKRVVDLNDRALRKVVVGLGGPIQGVPREDGFDITVASEIMAIICLASDLKD
                     LKKRLSEIVIGYNYKKEPITVGEMGYEGALTLLLKDALKPNLVQTLEHTPAIVHGGPF
                     ANIAHGCNSVSATSTALRLGEYVVTEAGFGADLGAEKFLDIKVPALGKAPDCVVIVAT
                     IRALKMHGGALKTELSEENVDALAKGFTNLQKHTESIQTFGIPYVVAINKFITDSDAE
                     VAKLEALCKEHGIPFSLTEVWEKGGDGGLELADKVIAAVESGEADYKRIYDDAWSMEE
                     KLEAIVTKVYGGIGVELSSKAQKQIVEFKKYGWDRYPICMAKTQYSLSDDPTLLGRPT
                     DFVIHIREFIPKLGAGFVVALTGDVMTMPGLPKKPAALNMDVDENGNAQGLF"
     gene            complement(7880..8308)
                     /gene="mntR"
                     /locus_tag="U0342_000267"
     CDS             complement(7880..8308)
                     /gene="mntR"
                     /locus_tag="U0342_000267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator MntR"
                     /protein_id="HEM2421649.1"
                     /translation="MPTPSMEDYIEKIYSLIETKGYARVSDIADELFVHPSSVTKMVQ
                     KLDKDEYLIYEKYRGLILTPKGTQMGKRLLERHALLESFLSIIGVDPSHIYHDVEGIE
                     HHLSWNSIDRIGDVVQFFENHPDALKTLKAMETTKPETKE"
     gene            8673..8873
                     /gene="cspD"
                     /locus_tag="U0342_000268"
     CDS             8673..8873
                     /gene="cspD"
                     /locus_tag="U0342_000268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein CspD"
                     /protein_id="HEM2421650.1"
                     /translation="MQNGKVKWFNNEKGYGFIESDGGEDIFVHFTAIQGDGYKSLEEG
                     QAVTFEVVEGNRGAQAANVEKA"
     gene            8997..9398
                     /locus_tag="U0342_000269"
     CDS             8997..9398
                     /locus_tag="U0342_000269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HI family protein"
                     /protein_id="HEM2421651.1"
                     /translation="MEVFVDGASAGNPGPSGAGIVLKAEGIYEQFAIPLAVMTNHEAE
                     FIAIKLGLEEAIKKQATLIRLYSDSKVAIEAIHKRHAKNPLFKPHLEAILEMADSFEL
                     FFAEWRNVSQNKQADQLARQAIKKQKQPGVK"
     gene            complement(9417..10289)
                     /locus_tag="U0342_000270"
     CDS             complement(9417..10289)
                     /locus_tag="U0342_000270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-3' exonuclease"
                     /protein_id="HEM2421652.1"
                     /translation="MTENRENLLVVDGMALLFRAFYATAVSKQFMFNQHGIPTNGVQG
                     FMRHMFAAIRQSNPTHTLICWDMGSQTFRNELYDGYKTGRTAPPEEMIPQFDLAKEVA
                     AGFGFVNLGVPGFEADDCIGTITVQASNTIATTVLSGDKDLLQLIAPTNDVWIMQKGY
                     GNYKRYDEATFFEEMGISPRQFIDVKALMGDTSDGYPGVRGIGEKTAIKLIQEFESIE
                     GVLNNLDKLKPAQQTKIQEDLAMLELSQKLARIHTEVPLEIDLPSLKYDGFREDAFAV
                     VEKYGLKTLTRDIE"
     gene            complement(10367..10636)
                     /gene="rpsN"
                     /locus_tag="U0342_000271"
     CDS             complement(10367..10636)
                     /gene="rpsN"
                     /locus_tag="U0342_000271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S14"
                     /protein_id="HEM2421653.1"
                     /translation="MAKKSKVAKHERQQALVEKYAELRRTLKAEGRYDELRKLPRDSS
                     PSRLHNRCELTGRPHGYMRKFGMSRIRFRELAHQGQLPGVTKASW"
     gene            complement(10759..11817)
                     /gene="chiA"
                     /locus_tag="U0342_000272"
     CDS             complement(10759..11817)
                     /gene="chiA"
                     /locus_tag="U0342_000272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase ChiA"
                     /protein_id="HEM2421654.1"
                     /translation="MNGKQVMVGGLSLLLVGAGLGAFGSTAQAATDDASVMPDISNKQ
                     VLVGYWHSWKSSGNDGYQQGTSADIALKDTPKAYNVVDVSFMKGDGVNRIPTFKPVGI
                     NDSDFRAQVGALNKEGRAVLLALGGADGHVELKAGDEEAFANEIIRQVETYGFDGLDI
                     DLEQSAITAGDNKTVIPAALKIVKDHYKAEGKNFLITMAPEFPYLKPGSAYESYLTSL
                     ANYYDYIAPQLYNQGGDGVWVDETNQWIAQNNDTLKESFLYYMADSFINGTRGYLKIP
                     ANKFVFGLPANVDAAATGYVKDPQIVKNVFTRLQAKGTPVKGIMTWSVNWDAGKNKAG
                     VPYSNGFSNAYGPIVGTK"
     gene            complement(12009..13316)
                     /locus_tag="U0342_000273"
     CDS             complement(12009..13316)
                     /locus_tag="U0342_000273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine permease"
                     /protein_id="HEM2421655.1"
                     /translation="MLGKGKIAALGFQHVLAMYAGAVIVPLLIGGALGFNGEEMTYLV
                     SIDIFMCGIATLLQLTVNRFFGIGLPVVLGCAVQAIAPIILIGQDMGIGAIYGSIIVS
                     GLFVLLIAPFFSKVVRFFPPVVTGSVVTVIGLTLIPVAINNLAGGEGAKDFGSMYNLG
                     LGFGTLLLIILVYRFGQGFSKAIAVLIGLVGGSLFAALYKGISLGPVSEASWFHMPKP
                     FYFGTPTFEWPAIITMILIALVSMVESTGVYFALSDITERKLTQKDLTRGYRAEGLAI
                     MLGGVFNTFPYTAYSQNVGLVQLSGIKTRKVIYAAAGFLIVLGLIPKIGAVTTIIPTP
                     VLGGAMVAMFGMVVAQGIKMLGKVNFTSQENLLIIACAVGVGLGVTVVPDLFNAFPSF
                     VRLFTSNGIVAGSVTAITLNIIFNMIPHRKDKKVADPEPQHAK"
     gene            complement(13323..13901)
                     /locus_tag="U0342_000274"
     CDS             complement(13323..13901)
                     /locus_tag="U0342_000274"
                     /EC_number="2.4.2.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="xanthine phosphoribosyltransferase"
                     /protein_id="HEM2421656.1"
                     /translation="MKLLEEFIQEKGTVLPGNVLKVDAFLNHQIDPVLMQAMGNEFAK
                     RFQDLGITKIVTIESSGIAPAVFAGLALSVPVVFARKKKSVTLTDNLFTSTVYSYTKK
                     ESNDISVSKQFLTADDTILVIDDFLANGQAALGLLEIAEHAGAKVAGIGIVIEKSFQQ
                     GRELLNKTGIPVYSLARIASLENEEILFLEEE"
     regulatory      complement(13983..14083)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
     gene            complement(14129..15637)
                     /locus_tag="U0342_000275"
     CDS             complement(14129..15637)
                     /locus_tag="U0342_000275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxypeptidase M32"
                     /protein_id="HEM2421657.1"
                     /translation="MVETLEEEFLAYIKKMEALEEALALVYWDLRTGAPSKGMEGRSD
                     VIGVLSEEIFNMQTSEEMAAFIAGLNLDKENLSEITLKTLEESQKKYDLNKKIPSKEY
                     AEYTKLVAQAETAWTTAREQNDFAAFEPFLTKILEMKRKFVEYWGYEENKYDTLLDQY
                     EPGVTVSVLDSVFEKVRDGIMAIREKIANEGVKPDATILNTKISEAKQKEFSIRILNK
                     MGFDFEAGRLDETVHPFATGLNTGDVRITTRYNENDFKMAVFGTIHEGGHAIYEQNFD
                     AALVGTPLANGASMGIHESQSLFYEIIIGSSLAFWKSNYADFQAITKPAFDHVTLEDF
                     YRAVNISESSLIRIEADTLTYPLHIMIRYELEKALINGELEVKDLPKAWGDKYEEYLG
                     IRPDNDTNGVLQDIHWAGGDFGYFPSYALGLMYAAQFFNQMQKEIPNIDAIIASDDYS
                     ELKTWLTEHVHKFGKTKKPLEILTDTTGEGLNPTYLLDLLEKRYAYVYQFNK"
     gene            complement(15657..16805)
                     /locus_tag="U0342_000276"
     CDS             complement(15657..16805)
                     /locus_tag="U0342_000276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent RNA methyltransferase"
                     /protein_id="HEM2421658.1"
                     /translation="MKSFQLVATAASGLEAIVGKEVARLGYDPKVENGKVYFEGDLSA
                     IARANLWLRVADRVKIVVGVFKATTFDELFEKTKALPWEDYLPLDAQFPVAGKSVKST
                     LYSVPDCQAIVKKAIVNRVSEKYRRSGRLMETGALFKLEVSILKDEVTLTIDTSGAGL
                     HKRGYRLAQGSAPIKETMAAALVLLTSWHPDRPFYDPVCGSGTIPIEAALIGQNIAPG
                     FNREFVSETWDWMPKQVWADARQEAEDLANYDQPLNIIGGDIDARLIEIAKQNAVEAG
                     LGDLITFRQLQVADFQTEDEYGVVVANPPYGERLEDEEAVRQLYREMGIVYKRMPTWS
                     VYVLTSYELFEEVYGKKATKKRKLYNGYLRTDLYQYWGPRKPRPKKED"
     gene            complement(16967..17348)
                     /gene="rnpB"
                     /locus_tag="U0342_000277"
     ncRNA           complement(16967..17348)
                     /ncRNA_class="RNase_P_RNA"
                     /gene="rnpB"
                     /locus_tag="U0342_000277"
                     /product="RNase P RNA component class B"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00011"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00011"
     gene            complement(17385..17726)
                     /gene="gpsB"
                     /locus_tag="U0342_000278"
     CDS             complement(17385..17726)
                     /gene="gpsB"
                     /locus_tag="U0342_000278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division regulator GpsB"
                     /protein_id="HEM2421659.1"
                     /translation="MTSEQFEYHLTGKEILEKEFKTGLRGYSPEDVDEFLDMVIKDYS
                     TFTQEIEALQAENIRLVQELDNAPLRTSTQPAPTFQAAAQPAGTTNFDILKRLSNLEK
                     HVFGNKLDDNE"
     gene            complement(17858..18403)
                     /locus_tag="U0342_000279"
     CDS             complement(17858..18403)
                     /locus_tag="U0342_000279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1273 domain-containing protein"
                     /protein_id="HEM2421660.1"
                     /translation="MKSIAVTGYKNFELGIFKKDADEAVYIKETIKRHLLPLVEDGLE
                     WVIISGQLGIELWAGDVVAELKADYPIKLAILEPFEKQSANWNEANQLWASEVLEKAD
                     YHAFITKRPYESPAQFAARDGFIIDNTDGALLVYDLEKEGSPKFFYDRAIQAKEQSNY
                     YIDCIDFYALQEVVEDMNQTF"
     gene            complement(18400..18765)
                     /locus_tag="U0342_000280"
     CDS             complement(18400..18765)
                     /locus_tag="U0342_000280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YppE family protein"
                     /protein_id="HEM2421661.1"
                     /translation="MELLNRTEKLLLQNEKNWELYLSNREEAKPFDFYKDMKPFVDEA
                     KNSADAFLELAIPWVNKERPPYLGELQLRQACDNVQMTAVSAFNGKSFYKHFLDHYQS
                     TKYTLTRVRDFLKRKEELM"
     gene            19012..19617
                     /gene="recU"
                     /locus_tag="U0342_000281"
     CDS             19012..19617
                     /gene="recU"
                     /locus_tag="U0342_000281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RecU"
                     /protein_id="HEM2421662.1"
                     /translation="MAIGYPNGKKYAASHEVLPQQKRKAPVTYGKRGMSLEDDLNDTI
                     AYYLTHEIAVIHKKPTPVQIVSVDYPKRSSAKIKEAYFKTPSTTDYNGVYKGKYVDFE
                     AKETQNTTSFPLSNFHDHQMTHMANVLKQDGIVFVIIAFQKLGETHFIPFEKFYPFWE
                     RMQSGGRKSVTIAEIQDVSDQIPYGLNPRLDFLQSIDKLYF"
     gene            19649..22132
                     /locus_tag="U0342_000282"
     CDS             19649..22132
                     /locus_tag="U0342_000282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEM2421663.1"
                     /translation="MADKPQTRSQYRNKQSGGSKKKSQKRGKRVVANIFKTIFFVGLF
                     LAFFGIAAGATVFYDYAKDAPKLTDSKLRDPLSSKLLDKDGKVFAEVGTERREYIEYK
                     DIPETLKNAILTTEDARFYEHDGIDPIRLGGAVIANLTDGFGAEGASTLSQQIIKMSY
                     LDYTNKTLARKAQEAWLALQLEEKYSKNDILEIYVNKVYMSDRVHGMQTASEHYFGKN
                     LKDLTLAQTALLAGMPQSPNNYNPYEHPEAAKKRRDQVLTNMYTHDKITKEEMTEAQK
                     TSITTGLRSKKDREDKIYKYDSYVTQVLSEIPKEYDVYRDGLTIHTALDRDAQEYTEK
                     MLNTNEIVNFTDDEMQAGIVLQDTKTGRVQAIGGGRKQKVTRGYNYATQVKRSVGSTM
                     KPIADYGPAFEYLDWSTAHILEDEPYTYSGGTPINNWDFAYKGPISVRQALYQSRNIP
                     ALKTLQAVGLDKSEEFVNKLGITYDEGQNVESNAIGANSSNPMQMAGAYAAFGNKGIY
                     NKPHTVTKIVLSDGQTEIDTEPQSTVAMKESTAYMVSDVLKDVLSIGTGTSAAVPGVP
                     AAGKTGTTNIPPEFTSKYYYPSGAARDSWFAGYTTNYSIAVWTGYDDKKKYVSASEQK
                     IAQRMFSKLMAHASAGKTTADFKMPSNVVSVPILKGSNPIARAAAGTASDKVSYELFL
                     SGTAPTKTASTPEDEKKKAEEAAKKKKAEEDKKKTDEEKKKEEEAKKKAEEEAKKKAE
                     EEAKNLTAPAGLRASYNAGSKQINVSWSAVDGATYEVTVNGSTTTVSSTSVSVSGGNP
                     GDTVSINVVAVKDGNRSPASSTTVKIPDS"
     gene            complement(22175..22666)
                     /locus_tag="U0342_000283"
     CDS             complement(22175..22666)
                     /locus_tag="U0342_000283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421664.1"
                     /translation="MAEFKYAVELTHPDFPAPDVILEEYDPESIYVSGLPFWQEQQFF
                     TKGGGVIPWKNETERACRKLAKHMTNLAESMEADLKVHKKPSPVTVRDALGIFLSILF
                     WSNHRPVQLDNLMDQIKTLETKPLNLDERLEYVLKRGNTYLGFRQLNELMLEQRKLIA
                     KRS"
     gene            complement(22659..23318)
                     /gene="nth"
                     /locus_tag="U0342_000284"
     CDS             complement(22659..23318)
                     /gene="nth"
                     /locus_tag="U0342_000284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III"
                     /protein_id="HEM2421665.1"
                     /translation="MLSNKQTVLCIEEMAKMFPAAHCELVHKNTFELLVAVVLSAQCT
                     DVLVNRVTASLFEKYHSPEDYLAVPLEELMEDIRSIGLYRNKAKNIQGLSEKILIEFN
                     GEVPKTHAELESLPGVGRKTANVVLSVGFGIPAIAVDTHVERISKRLGICRWKDSVVE
                     VEETLKRKLPKELWSDAHHYMIFFGRYHCKARNPECPTCPLLYLCREGKKQAKVRGFD
                     G"
     gene            complement(23329..24048)
                     /locus_tag="U0342_000285"
     CDS             complement(23329..24048)
                     /locus_tag="U0342_000285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DnaD domain-containing protein"
                     /protein_id="HEM2421666.1"
                     /translation="MNPKILEKWMAEGQVTLPQVLVKNYATIGLNEVELVLLLQIQSF
                     AAEAEFFPSMEMLTNRTTLPLEETIKTMDSLLKKGVIAIEQSQDNSRMISEQYNLAPL
                     WGKLVALYENKEADSKHEKELEKQTSLYTLFEAEFGRPLSPMEAEMLSAWVEQDRTSP
                     DLIKEALKEAVISQKLNFRYIDRILLNWSKQGVKTIEDAKRVAEEFHQNGRTSQAINQ
                     TEVKKSAGSIPLYDWLEKRKG"
     gene            complement(24198..25490)
                     /gene="asnS"
                     /locus_tag="U0342_000286"
     CDS             complement(24198..25490)
                     /gene="asnS"
                     /locus_tag="U0342_000286"
                     /EC_number="6.1.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine--tRNA ligase"
                     /protein_id="HEM2421667.1"
                     /translation="MKITINQASEFVGKEVTIGAWLANKRSSGKIAFLQLRDGTGFMQ
                     GVVVKAEVGDDIFATAKALTQETSLYVTGTINEDTRSPFGYEMAVSGVEVISESHDYP
                     ITPKEHGTEFLMDHRHLWLRSNRQHAIMKIRNEIIRASYEFFNKEGFLKIDPPILTGS
                     APEGTTELFHTKYFDEDAFLSQSGQLYMEAAAMAFGKVFSFGPTFRAEKSKTRRHLIE
                     FWMIEPEMAFYKLEDSLQVQENYVAFLVKAVLDNCRLELDRLGRDVSHLEKMVAPFPR
                     ITYTEAIERLHELGFDDIVWGDDFGAPHETAIADSFEKPVFITHYPKAIKPFYMPEDP
                     ENDQVVLCADMIAPEGYGEIIGGSERIHDLETLQARMEDFDLDQEAYSWYLDLARYGS
                     VPHSGFGLGLERTVAWISGTEHVRETIPFPRLLNRLYP"
     gene            complement(25504..26685)
                     /locus_tag="U0342_000287"
     CDS             complement(25504..26685)
                     /locus_tag="U0342_000287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2421668.1"
                     /translation="MDLPLSKRVKGVAPSPTLAITAKAKQMKQEGIDVIGLGAGEPDF
                     NTPQNIIDAAIESMNKGFTKYTPSSGIIELKQAIVDKLQKDQFLNYETNQIFVGTGAK
                     HVLYSAFQTILDPGDEVIIPVPYWVTYPEQVKLAGGIPVFVETGFDADFKISAANFEK
                     AITKKTKAIVLNSPNNPSGMCYTKEELIAIGEVAEKHQIYILSDEIYEKLYYGNKADL
                     VSIASLSDRLYDLTIVINGVSKAYSMTGWRIGYAAANKEIIAGMSKLADHLTSNPTAN
                     AQYAALEAYVGSQEVPEKMYKAFEERMERFYPELSSIPGFKPKKPDGAFYFFIEVKEA
                     AHKKGFQDVDAFVAALLEEAKVAVIPGSGFGMPDYIRLSYATNPDLFQEAINRIKSFM
                     K"
     gene            complement(26708..27292)
                     /locus_tag="U0342_000288"
     CDS             complement(26708..27292)
                     /locus_tag="U0342_000288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5590 domain-containing protein"
                     /protein_id="HEM2421669.1"
                     /translation="MYLCENENAYRRRNSGNLEIEMSEIILRNRKPKRKIGKWIAIIL
                     GIIIVLVVAAFLYFRYAEKPVTNAETEALDRISGQVDLKTTDQFYLYNGPKEVYYVLT
                     GKNSKNKNIIVWVPKKKSDKVYVKFASDGITEQQARDKVTKEKNPKKILHVNLGMEKE
                     TPIWEVAYLDKNDKLNYFDINFETGEWYREIENL"
     gene            complement(27337..30123)
                     /gene="dinG"
                     /locus_tag="U0342_000289"
     CDS             complement(27337..30123)
                     /gene="dinG"
                     /locus_tag="U0342_000289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase DinG"
                     /protein_id="HEM2421670.1"
                     /translation="MKQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRLETYTTF
                     LNPEKPIPAFIQELTGISPKDVKNAPLFEDVAPIIANLLEDTIFVAHNVSFDWTFLER
                     EMTRAGISLGKMKKLDTVELARIMYPGIDSYKLQDLSDEFNLGHDKPHRADSDAEVTA
                     DLLLLLLEKLENLPLPVIRQMTTISGSLKSYLPELLFEIEMRKERENKPLDPAFVEHR
                     GLVIRKKEVEKPTYSRADLLEFPETDEAKMALFKKAGAPLYARSGQFEMMNLVFQAMK
                     SGKHALIEAGTGIGKSLGYFLPAIYQAKQAELPVVISTYTNLLQAQLFEKDVPLLTKL
                     TGFKVKASLLKGRDHYLNLFKFEQLLQEVDTQYDVVVTKLKLLVWLTETTTGDIDEVN
                     LSSGGELFWNRMKHTGWFLSEKHDPWLAHDFYKFNIKQAKNADLVIVNHALLLNDHFS
                     GRETLPKYAFAVIDEAHHFADSARMQGSFVLSYRKIKYFLNQLGSLEKYSLLTRLAMA
                     FPEADSLYDLDIAAMKLSDAVEEFFGLLKMQLNFARKNLQEVVLVENSEKDAWNDKVY
                     YAAEKVLHLLKESEKNMETLLEQGKQEENELGEAESAFLEEMYAFLLDWKNMVKQLEQ
                     MLHKKSPILTIYLQADKNHSISSIRLKAVLMEVEPTLGKEFFAKKESVIMTSATLTVK
                     GKFDYLRKSLGLEEEQIMEKRIPSPFDYKENARVMIPDDMPPIKDTPIERYTLELAKY
                     IRHIAVKTNGRMLVLFTASDMLQKTYYHMKNEKSLEEYVLLAQGVSAGSAARLTKQFQ
                     MFDKSILLGTTSFWEGIDIPGEDLSCLVIVRLPFAPMDDPYTKAQISLRKERGENAFQ
                     TYSLPEAVLRFKQGFGRLIRRESDRGIVFVFDNRVDTTKFGKAFLESIPSAPILKGKQ
                     ADLLEEVSEFFKEG"
     gene            complement(30220..30603)
                     /locus_tag="U0342_000290"
     CDS             complement(30220..30603)
                     /locus_tag="U0342_000290"
                     /EC_number="4.1.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate 1-decarboxylase"
                     /protein_id="HEM2421671.1"
                     /translation="MFRTMMNGKIHRATVTEANLNYVGSITIDSAILEAVDMLPNEKV
                     QIVNNNNGARIETYIIPGEPGSGVICLNGAAARHVQVGDVVIIMSYGMFTTEEAKTHE
                     PKIVVLDEKNHIEMILPEEKAHTTL"
     gene            complement(30607..31464)
                     /locus_tag="U0342_000291"
     CDS             complement(30607..31464)
                     /locus_tag="U0342_000291"
                     /EC_number="6.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantoate--beta-alanine ligase"
                     /protein_id="HEM2421672.1"
                     /translation="MLIIRNKQDLKEAILEQKKANKTIGYVPTMGFLHEGHMTLVSHA
                     RKETDFVVMSVFVNPTQFGPNEDFDAYPRDEAHDAKLAEEGGVDILFVPTVEEIYPTE
                     LATKLHVIKRVSVLDGADREGHFDGVVTVLTKLFHLVNPDNAYFGQKDAQQVAVVSGL
                     VEDYFFPINLRIIATVREADGLAKSSRNVYLTEKERKEAPVIHEALQLGRELIESGET
                     NEAKIVQVMTDKINEQPSHENIAYLALYSYPEFTPVTDWTKGIIIAAAVKYSKARLID
                     NELINVKRR"
     gene            complement(31468..32301)
                     /gene="panB"
                     /locus_tag="U0342_000292"
     CDS             complement(31468..32301)
                     /gene="panB"
                     /locus_tag="U0342_000292"
                     /EC_number="2.1.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-methyl-2-oxobutanoate
                     hydroxymethyltransferase"
                     /protein_id="HEM2421673.1"
                     /translation="MKRPVDFFAMKENGEKITMITAYDYPSAKNVEQAEADMILVGDS
                     LGMVVLGYDSTVPVTMDDMIHHTKAVKRGAPDTFVVTDMPFMTYHGSVDETIQNARKI
                     IQESGAHAVKLEGAGEVVNKIARLTEAGAPVVAHLGLTPQSVGLTGSYKVRAKSAQEA
                     QELMDNALAVEAAGAIALVLEAIPRQLAEKVSKALSIPTIGIGAGVETDGQVLVYHDI
                     IGYGISRRAKFVKAYADIDERIEPALASYVKEVKAATFPEVKHSFTMAEEDLKGLYGR
                     E"
     gene            complement(32468..32941)
                     /locus_tag="U0342_000293"
     CDS             complement(32468..32941)
                     /locus_tag="U0342_000293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2421674.1"
                     /translation="MKKILLLLTSITVILTLGACGDNKKETEEKANQTEKESASFLTT
                     ISTKDFKQKMADKTTGFVYVGRPTCEDCQAFQPMLKKELKKRQPDQKMAYYNTDKASE
                     KSRDDMIALLEKMDIDSVPTMVYLKDGKVASTYAATDEPAKLTNWMNKVSGEVSE"
     gene            complement(33089..34066)
                     /locus_tag="U0342_000294"
     CDS             complement(33089..34066)
                     /locus_tag="U0342_000294"
                     /EC_number="6.3.4.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin--[acetyl-CoA-carboxylase] ligase"
                     /protein_id="HEM2421675.1"
                     /translation="MKNNREKLLALFTESDGTYLSGQEIADSLGCSRTAVWKQMEALR
                     KEGFEIEAVRNRGYRLSATAEQYTKDALLLGLETKFIGQHLEIHESVSSTQIIAHQQI
                     ESSPEGTVIVADEQTAGKGRLLRPWSSKKGEGIWMSVILKPQIPIQKVPQFTFIASLA
                     ITEAIENSTKLEPKIKWPNDIYIGKRKICGVLTEMQAEAETIHAVIIGMGINVNQQEF
                     PEEIKDKASSLKLELGESVSRKALLQEILTSLEKYYELFLDKGFAPIKLLWETKAIPF
                     GEKLTASTTKGKIHGQVKGISDEGVLLLQDALGEVHSIYSADILLDNEK"
     gene            complement(34056..35237)
                     /locus_tag="U0342_000295"
     CDS             complement(34056..35237)
                     /locus_tag="U0342_000295"
                     /EC_number="2.7.7.72"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA tRNA nucleotidyltransferase"
                     /protein_id="HEM2421676.1"
                     /translation="MNDVFLKALPVLQKLTTAGFEAYFVGGSVRDYLLNRTISDVDIA
                     TSAFPEEVKEIFQTSYDTGIAHGTVTVRENNEFYEVTTFRTEGTYEDFRRPSEVTFIR
                     SLEEDLKRRDFTMNAIAMDEHFALQDPFSGQLAIQNKEIKAVGKASERFHEDALRMMR
                     AVRFLSQLDFELDKETEKALESQIELLQHTSVERITVEWLKMMKGKAAKRAIELLLKV
                     KMETYLPGLKDEKSALSEFASWDWEKRTTEESIWLGLVVAVKPNNVNAFLKAWKLPNK
                     TIQLVNKAYQYALNMKETWLTEELYHAGKAVFSLVNELNVIRGQENNQHKVSQAYEAL
                     PIHSKKDLAITGADLLKWSGESAGPWVKETLDKVECGVLSNEINNEKIQIKRWLGYHE
                     E"
     gene            complement(35252..35656)
                     /gene="mgsA"
                     /locus_tag="U0342_000296"
     CDS             complement(35252..35656)
                     /gene="mgsA"
                     /locus_tag="U0342_000296"
                     /EC_number="4.2.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylglyoxal synthase"
                     /protein_id="HEM2421677.1"
                     /translation="MHIALIAHDEKKDLMVGFATAYKHLLEPHQLYATGTTGLRIIEA
                     TGLTVHRFKSGPLGGDQQIGARISENKMDLVIFLRDPLTAQPHEPDVTALIRLCDVYE
                     IPLATNIGTAEILIRGLGAGFLDWRDLRRNDE"
     gene            complement(35672..36463)
                     /locus_tag="U0342_000297"
     CDS             complement(35672..36463)
                     /locus_tag="U0342_000297"
                     /EC_number="1.17.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate reductase"
                     /protein_id="HEM2421678.1"
                     /translation="MRVAVSGFKGRMGHEVVKTVLREADLELVAVLDHEPKEKNINEI
                     VEFSSLDVPVFGNLSEMLEEIKPDCVVDFTTPKVGYSNTKTILEHGVRAVVGTTGFTP
                     EQISELRSIAESKKIGALIAPNFAVGAVLMMQFAQKAAKYFPNVEIIELHHDNKLDAP
                     SGTAVKTAEMMAETREFVKQGAADEVELIEGARGAEYEGMRIHSVRLPGLVAHQEVIF
                     GAEGQGLTIRHDSYDRISFMSGVALSVRKTKELETLIYGLENILD"
     gene            complement(36460..36795)
                     /locus_tag="U0342_000298"
     CDS             complement(36460..36795)
                     /locus_tag="U0342_000298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HEM2421679.1"
                     /translation="MAKTMAEIQKEVDDFIGGFEEGYFSPLAMMARITEETGELAREI
                     NHYYGEKPKKTSEPTKTVAEELGDCLFVLTCMANSLDIDMEKAHDTVMAKFKERDKDR
                     WTKKEEKAK"
     gene            36936..37802
                     /locus_tag="U0342_000299"
     CDS             36936..37802
                     /locus_tag="U0342_000299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2421680.1"
                     /translation="MLKTLRTKNICFIMLGTAIYAFGLVNFNIANNLGEGGLAGVTLF
                     LLHFFQIDPAYSNLILNIPLFILGWRVLGNRSLIYTGIGTVSLSLFLWIFQRIPYTLD
                     LHSDLLLVALFAGGFSGIGLGLVFRYGGTTGGSDIIAKLLNHTKGISMGRTLFAIDAI
                     VLVASLSYLDVRQVMYTLVAVFIGSRVIDFVQEGAYAARGALIISKDNDAIASHVMLA
                     MNRGVTVLEGRGGFSKKDQDVLYIVVAKNEIIQLKNIVQAIDPHAFVSVSVVHDVMGE
                     GFTLDENKNPIY"
     gene            complement(37792..38898)
                     /locus_tag="U0342_000300"
     CDS             complement(37792..38898)
                     /locus_tag="U0342_000300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-binding oxidoreductase"
                     /protein_id="HEM2421681.1"
                     /translation="MQKIVIIGGGIVGASAAYLLSKENVQVTLIDSDEPGQATRAAAG
                     IICPWLSKRRNKYWYELAKNSAAFYKELAGTLEGDTGRNSGYKQVGVLALRKTEEKVT
                     ELFNLANERRLDAEVMGEIVKLSEEETKQKFPLVKPGFGSVYVSGAARVNGSLFCERL
                     LYAAKENGVKIKSGRAHFSTDGKVRVDGEDEHYDKLIIAAGAWLKELLDEASFHTEVL
                     AQKGQLLELDFSEFQTDEWPVILPPSAKSIVPFDNGKIIVGATHEKTAGFDTKPTVEG
                     KAEILTEVSQFMEGDLASKVAHVAVGTRPYTPDFAPLIGQLPGFESVFLANGLGASGL
                     TTGPYVGKLLADLALGNTVDLALENYEPSKYISR"
     gene            39218..>39883
                     /locus_tag="U0342_000301"
     CDS             39218..>39883
                     /locus_tag="U0342_000301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEM2421682.1"
                     /translation="MPNILDSLWNSMALFLSALFFHGMALRSIREKKPAWFQIKFSNE
                     IINYALGIYYGLLGVYFIIRGLPGTDSGIYTDMLLNILIVLHLFSSAGPATIALLLIV
                     AGKLFLGDALFANLIYAFLIIGFHFVCMEVAKLRLSSVQKVVLVKLSAIPLMLFYLHQ
                     KIHLLYTINDLPVWILYFLVSFFITFIIVSAAYYIDTSNKLIYDLQQSTILDPLTGLT
                     NFRH"
BASE COUNT        11283 a         8682 c         6871 g        13047 t
ORIGIN      
        1 ctagcattat ttagaactca aagcatatta aaaagcagcc aaaatatatc agctgctttg
       61 tagtttacat ctttaattct gctttactcg cgaaaaatcc tgctaaacga tttttcactt
      121 ttcggatgcc gccagcttca tcactttcta aattcatcgg cattaccggt tcatgtaagc
      181 tcattcgtag taagaaccag ccttcaccaa gcgcaccttt cgtattcaca cgaattcctt
      241 cttggttcac aggttctaat tccatatccg gatcagcttc tacgaaagtc agaaaatcag
      301 ctagaacttc ttttccataa gctttaaaat cggttgcggt aatactcaaa cgaatttctt
      361 cgctttcagc cggttctctt aaatcggcta ttaaatctgg caaatctttt ccattttttc
      421 gtaaagtggc ataagtcatt aaaattttgg caatgagata tgcgccatca tccaagaaat
      481 aattttcttt taatgcggca tgaccactta cttcgatagc aatttctgat ggtgttccgt
      541 ctgcatttag gcgcagtgct tcattgataa cattacgata accacgttta aatcggtgtt
      601 gtttcccgcc ttttgcttcg ataaaggttt gcaaatgccc agatgttgtg gagtcagtca
      661 cgatagttgt tcctggtttt tcttctaaaa taatactaga gataacagca attaatgggt
      721 tgcggtttaa actttcgcca tttttatcca taatcgcagc acggtctaca tccgtatcaa
      781 aaatcacgcc taaatccgct ccactagcaa ggaccgcttt tttcaaacta gccatagctt
      841 cctcattgtc agggttcgga atatgattag gaaaatttcc atccggatct aaaaactggc
      901 ttccagaaat gtctgcgcca agttctgcca atactttctc agcaaaaaag ccgccagcgc
      961 cgttccctgc atcgacaata atatggcttc ctagaagtgg cttcattttg tcagctgcat
     1021 ctgtgattcc agctctaatt ttatccgtta agtctgctgc atatgtagaa agtaaatctt
     1081 gttttgttac cttcccaaga tttagtccat tttctatgaa tgatttatct gcgtgagcca
     1141 cgatataatc aatatcttcg tgttcagctc caccagattt cgtaaataat tttagtccat
     1201 tatacataaa aggtaagtgg ctcgctgtaa tcataatgcc ggcatcgcag tcatagtctt
     1261 cgtactgagt tgccataaac atggccggcg tagttgcaag ccctacatcc accacattga
     1321 ttcctgcaaa agttaaccct ttgacaagtg ccgcttttaa acgttcagct gaaagtctgc
     1381 tatcatggcc aattgccact ttcgcttgac cttccacttt tttctcctct tttagccatt
     1441 tcgcaaagcc ataagcaatc ttttctacac gttcgtctgt tagcgtaatc tgatattttt
     1501 ccgtagcaat agctattcca cgtatgtctg atccgttttg cagtgcttct aacgctttcg
     1561 tttctgattg attcatgtca ttcctccagc ttctgtattt ttccccttca ttatagctta
     1621 aattgcgaaa ttttcacata gcttttacaa aagatgtgct ctattcgcga taataatttg
     1681 caagtcaacg gttaattctt ccggtgggtt tcccagtaat tcgctttttt tatccgcttc
     1741 aatatgccaa ccaagtggcg tcatttcaag aaaatctgca aataattctt tggcaatcgg
     1801 cgctttgtag gtcactcgtt cgacatgttc tacgcttaac ttttctgcta atcgtgatgt
     1861 gaccgactca ttcgaataac tacttttctc atcaacataa ataaattcac gtaattcgcg
     1921 taaataattc gcttctggca ctacttttaa caaaaaccca tccttcttta aaagccgttt
     1981 gaactccacg taattcgatg gcgataaaat atttaaaatg acatccgccg tctctgcttg
     2041 attcgggcaa ttggctaaat cagctaccgt ccaagaagta ccaggatagt cgcgtgccgc
     2101 ttgtttcact ccctctttgg cgatatctaa gccaaccgct tggacattaa caccagtcgc
     2161 ttgtaaattt gatacgactc gcgccaaatg acttccttcc ccgcaacccg catcatataa
     2221 aacaagttgt tcttttttct tctccgcaat aatttctgtc actcgttcga ttaatttttc
     2281 aaaaaagcca ctcgcaatca cttttttacg ggattcgaat aatgcttgat cgtattttgt
     2341 tttatgcgct tgttttagta aatgtacgta acctggtttg gcgatatcaa acccgtgacc
     2401 ttctaggcat acaaatgact gcggctcttt aaactcgaat gcttcgccac aaatcggaca
     2461 agcaagaagc gccatatttt ctttcaaagc gcgtttattt atctccattt ttgataacaa
     2521 ttaatactca ctccactcga aaaacgttgc ccgcaaacag gcaacgtttc tactaatttc
     2581 tttcatacgt ataaaaagtg taattgtact tatttttttc atctttttca tggaattctt
     2641 tcgccacttc ggaaaaattc tcccaatcca cttcaggaaa cgcagtatca gcctcaaact
     2701 ctgcatcaat ttttgtcaca atcagctgat ccgccacatc cataaataaa cgatagattt
     2761 ctgcaccacc aactatatag attggttccc ccgtctcagc aagggctaaa acagcttctt
     2821 ttgaatgaag tatctctgca tcatctaact tgagaccttg atctcgtgtc aatacgattg
     2881 tctttctatt tggtaaagct tttcctaacg attcataggt ttttcgcccc atgacaagtg
     2941 ttttcccagt cgtcgttttt ttgaaaaact gcaaatctcc cggtaagtgc cacggcattt
     3001 tgttatcttt tccaatatta ccagcgcggt cttgtgccca aacaaaaata atcatccaag
     3061 aaaacctccc ttatactgaa attggtgctt taattgctgg atctggatta taaccatcca
     3121 gtgaaatatc cgctacatca aaatcaaaaa tcgttgctgg tttatctgaa agcactaatt
     3181 ttggaagttt gtgcggtgtt ctagacagct gttctttcac ttgctcaata tgattgttat
     3241 aaagatgcgc atcacccata gtatggataa actcgccaac ttccagccct acttcacgtg
     3301 caatcaggtg tgttagaagt gcatagcttg caatattaaa cggtacacca aggaaaatat
     3361 cggcactacg ttgatacagc tgacatgata attttccgtc cgctacataa aattggaata
     3421 gcgaatgaca tggcggtaaa gccatattcg gaatatcttc tggattccaa gcagacacaa
     3481 tcaaacgacg cgagttcgga ttcgttttaa tcatttcaat caaatccgct aactgatcaa
     3541 ttgtttctcc ttgtgaagtc ttccattcgc gccattgttt accgtaaata ttacctagct
     3601 caccgtattt attcgcgaac gcttcgtctt ctaaaatccg agctttaaac ttctccatct
     3661 ccgcttgata cacttctttg aaagctgaat cacgctcagc acgcagtcca aagtcagtca
     3721 tatcttcgcc tttataatca tcgcttttca caaaacgctc aaaagcccat tcattccaaa
     3781 tattattatt atgctgtaaa aggtagcgaa tattcgtatc tccatgtaaa aaccatagca
     3841 gttcacttac tacaagttta aatggtaccc gttttgttgt cataatcgga aagccctctt
     3901 gtaaatcaaa acgcatttga taaccaaatg tgctgattgt tccagttcca gtgcgatctc
     3961 ctttttgtgt tccattctct aaaacgtact tttctaaatc caaatattgt ttcatcgttc
     4021 gcactcctta ttccgcgtat tgtgataaaa attcccagcg ttccatcatt tgttcgagct
     4081 ccgtttcttt tgccgtgatg agttcgctaa tttctgctgc ttttgtaaag tctgctccgg
     4141 tttgttccaa tgtttcatta agcgattcaa tggtttgttc taattcacta atggcatctt
     4201 caattccgtc ccactcgagt tgttcttggt aggtgagttt aactttctct tttttctcag
     4261 gtgctgcctt ttcgaccgaa gtattcgcca tttttttcat tgatttcgct ggttttgctt
     4321 tagcctccag ctctttcaaa taatcactat attcaccgta gaaaatttct acttcaccaa
     4381 ttgctcggaa aacgagcaat ttgtttacga ctttatcgag gaaatatcta tcatggctaa
     4441 ccgtaattac ggtaccattg aatgattcta aatagtcttc taatacggtt aatgtttgcg
     4501 tatctaagtc attagtcggc tcatccagta ataagacatt tggtcgttcc atcaaaatgc
     4561 gaagtaagaa taaccgtcgt ttttctccac ctgataagct accaattttc ttcccgtggg
     4621 aatttggtgg gaataaaaat cgttctaaca tcgcactcac actgattact tcgccaccag
     4681 aagttgtgac ttgctctccc gcttcttgca aataagcaat cattcgcata tccgggtcca
     4741 tttcttcatt ttgttgcgta tagtaaccga tttgtacggt ttgacctgtg actacttccc
     4801 cagcatctgg tgctagtttt ccagccaaca tgttcagtaa agtcgatttt ccagttccgt
     4861 tgttccctgt aataccaagg cgttcaccag gttggataat caagctgaaa tcctgcaata
     4921 cttgtttttc atcaaagcgt ttttccaagt ttttcagttc gaaaacatct tttccaagac
     4981 gactagtaac aaaatcaatc gccagttctg agtcatcggt ttttgttttc acttttttct
     5041 ctaaatcgtg gaaacggtct tgtctggcat tttgtttagt ggcgcgacct tgaggaccgc
     5101 gacgcatcca tgctagttcc ttacgataaa ggtttttatt tttctcagat tcacggactt
     5161 cgttttccat ccgaatggct ttagattcca tgaatttctc gtagttccca acgtatcgat
     5221 aagccgaacc ccggtcgagc tccaccatgt gatttgtcac tcggtcaaga aaataacgat
     5281 catgggtaac aagcaagaca gcccctttaa agcgatttaa atattcttcc aaccaacgaa
     5341 ttgactgaaa atccaagtgg ttggtaggct cgtccaaaat gagtaaatct ggcgtctcga
     5401 ttaagacttg cgccaaacct acccgttttc gttgcccacc agaaagctcg cttattttcg
     5461 cggttaaatc tgtaattcct aaacgctcca aaatcgtttt cgcttctgtg ttcatatccc
     5521 aagccgcact agcatccatt tcttggctgg cggctgtata agcatcgtgt aatttggtat
     5581 tttccgcatc aagtgacatc gcaagtaaca cttcttcgta cttgcgcatt gcccgaagcg
     5641 ccgcagtatc cccgtcaaaa acagccgaaa gaactgtatc ttcttcatta aattcaggat
     5701 cttgcgccaa ataaccaatc gtataatctt ttgctttcgt aacagtacct ttatccccag
     5761 attcactacc agaaataatt tgcaataacg tcgatttccc ggtaccattt acaccgatta
     5821 aaccaatacg ttcgccctct gttatcgtta gcgagatatt ttcaaacagg ctttttccac
     5881 catatgtttt tgttaaattt tccactttta attgtttcat ttagtcccat ccatttcctg
     5941 ttcgtcctta tctattctag ctgaaaacat agaacatagc aattgcttaa gatgaaaaaa
     6001 gttccaaaag cggctcttcc acttttggaa cttttacttt taaaataaac cttgtgcatt
     6061 cccattttca tcgacatcca tattaagtgc cgctggtttt ttcggtaaac ctggcatcgt
     6121 cattacatcg cctgttaaag caacgacaaa accagcacca agttttggaa tgaattcgcg
     6181 aatatgaata acaaaatcag ttgggcgtcc aagtaatgtt gggtcatccg ataaggaata
     6241 ttgggttttc gccatacaaa tcggataacg atcccaacca tattttttga attcaacgat
     6301 ttgtttctgc gccttgctgg aaagttccac accaataccg ccgtatactt tcgtcacaat
     6361 cgcttctagt ttttcttcca tcgaccacgc atcatcataa atgcgtttgt agtccgcttc
     6421 tccactttca acagccgcaa tgactttatc cgcgagttca aggccaccgt cgccgccttt
     6481 ttcccaaact tctgtcagag agaaaggaat cccgtgttct ttgcagagcg cttctaattt
     6541 cgctacttct gcgtcagaat cggtaatgaa tttgttaatg gctacgacat aaggaatacc
     6601 aaatgtttga atagattcgg tatgtttttg taaattcgta aaacctttag ctagcgcatc
     6661 cacattttct tcgctaagct cggttttcaa agcgccaccg tgcattttca gtgcgcgaat
     6721 cgttgctaca ataacaacgc aatctggcgc ttttccaagg gcaggaactt taatatctaa
     6781 aaatttctcg gcaccaaggt ctgcaccaaa tccagcctct gtcactacat actcacctag
     6841 tcgaagtgct gtgcttgtcg cagaaacact attacatccg tgagcaatat tcgcaaaagg
     6901 tccaccatgt acaatggcgg gtgtatgttc taatgtttgc accaaattag gttttaaagc
     6961 atcttttaat agtaaggtta gagcgccttc gtagcccatt tcgccaactg taattggttc
     7021 ttttttatag ttataaccga tcacgatttc acttaaacgt ttctttaaat cttttaaatc
     7081 acttgctaaa caaatgatcg ccataatttc agaagcaacc gtaatatcaa aaccgtcttc
     7141 acgtggaacc ccttgaatag gacctccaag accaacaacc acttttcgaa gtgcacggtc
     7201 gttcaaatca actacacgtt tccaaacgat tcttctaccg tcaatatcta ggtcattccc
     7261 ttgttgcata tggttatcaa taaatgccga taaagcattg tttgctgctg taatcgcgtg
     7321 aaaatcacca gtaaaatgta aattaatatc ttccattgga ataacctgcg cgtatccgcc
     7381 acctgttgcc ccgcccttaa tacccatggt aggtccgagc gatggttcgc gaagtgcaat
     7441 aacggttttc ttatcttttt tagagagtgc gtcgccaaga ccaactgtca ctgtcgattt
     7501 cccttcacca gcaggcgttg ggttaatcgc cgtaacaaga acaagttttc ctggttcttt
     7561 atcttttagc gagtgaatgg tatcatagga taactttgct ttatactttc cgtaaagttc
     7621 gagtgcatct gcgtctagtc ctaaatgttc cgcaatagtc gtaactggta gaatttctgc
     7681 ttttgatgca atttcaatat ctgatttcac tttatttgac atgatatccc ctccgaatat
     7741 gtatattgta acaaagaatt aagatgtttt ggcttcttta gtgcatcaaa aaagcgcgac
     7801 accaagcgat gtaacaccat tttgattcta aagtaaagcc tgattgcgca aaaatcaaca
     7861 tctcaacctt ggattaccgt tattcctttg tttctggttt ggtcgtctcc atcgccttga
     7921 gcgtcttcag tgcatccgga tgattttcaa aaaactgaac aacatctcca attcggtcaa
     7981 tcgagttcca gctcaagtgg tgttcaatac cttccacatc atgataaata tgggacggat
     8041 ctacgccaat aatacttaaa aaactctcta ataatgcatg tctttctagg agccttttcc
     8101 ccatttgtgt tcctttaggc gtcaaaatta atccacgata tttctcatag attaaatatt
     8161 cgtctttatc cagtttctgc accatttttg ttacagagga aggatggaca aatagctcat
     8221 cagcaatatc cgaaaccctg gcataacctt tcgtctcaat aagggaatag attttttcaa
     8281 tataatcttc catactaggt gttggcatag ctataccctc caacttaaat tctttcacat
     8341 agccaattgt actataatat cgccctttct aaaagcaatt accctttcga aaacgaaatt
     8401 tctcctagag cggtcttccg aaaaaaaacc gtaattagta ccaatttaag acatttaagt
     8461 caaaagtatg cccttacaag tccaaaaatt taaaaaatat cgaaaatcag cttgacgttt
     8521 ataggtattt tgatttatag tgttagtatc atatgcggca acgctatgaa ctgaaaaggt
     8581 agtatttgcg agaaattttt ttaagttaaa atgaaagcgt tttaacaaat gattctagca
     8641 attattagcc atacttagga ggatttattt caatgcaaaa tgggaaagta aaatggttta
     8701 acaatgaaaa gggttacggt tttatcgaat cagacggcgg cgaagatatt ttcgttcact
     8761 tcacagcgat ccaaggtgat ggctacaaat ctttagaaga aggccaagcg gtaacatttg
     8821 aagtagtaga aggtaatcgc ggcgctcaag cagccaatgt agaaaaagcc taatccagtt
     8881 gccaaataga cacggactta aaaccggtat ccttttaccg gtttttttat tgcaaaaaaa
     8941 tagctttcct tctataataa agccacatct attcatctaa ataggaggca cataatatgg
     9001 aagttttcgt cgatggtgca agtgctggaa atcctggacc aagtggggct ggaatcgtct
     9061 taaaagcaga aggtatttat gaacaattcg ccattccgct cgcagttatg acgaatcatg
     9121 aagcagaatt tattgcgatt aaactcggac tggaagaagc cataaaaaaa caagctacat
     9181 taattcgtct atactcagat tcgaaagttg caatcgaagc aattcataaa cgacatgcga
     9241 aaaatccttt attcaagccg catttagaag caattttaga aatggccgat tcatttgaat
     9301 tgttttttgc tgaatggcgt aatgtaagtc aaaataaaca agccgaccaa cttgcgcgcc
     9361 aggctataaa aaaacagaag caacctggag tcaaataacc agattgcttc tgttttttat
     9421 tcgatatcgc gcgttaacgt ttttaaaccg tatttttcaa ctacagcaaa agcatcctcg
     9481 cggaaaccgt catatttcaa gctaggcaag tctatttcta gtgggacttc tgtatgaatc
     9541 cgagctaatt tttgacttaa ttctagcatc gctaagtctt cttggatttt ggtttgttgc
     9601 gctggtttca gtttatcaag gttgttcaag acgccttcaa tagactcaaa ttcttgaata
     9661 agcttaatcg ctgttttttc accgattcca cgaacacccg gataaccatc tgaagtatcg
     9721 cccattaatg ctttcacatc aataaattgt cttggagaaa tacccatctc ttcaaaaaat
     9781 gtcgcttcat catatcgttt ataattgcca taaccttttt gcataatcca gacatcattc
     9841 gtcggtgcga ttagttgcag taaatctttg tcgccactta aaacagttgt agcaatcgta
     9901 ttactcgctt gaacggtaat tgtcccaata caatcatctg cttcaaaacc cggcacacct
     9961 aaattgacaa agccaaatcc agcagctacc tctttcgcta aatcaaactg cggaatcatt
    10021 tcttctggtg gcgctgttct gcctgtttta taaccatcat ataattcatt tcgaaatgtt
    10081 tgcgacccca tatcccagca aattagtgta tgcgttgggt tactctggcg aatcgctgca
    10141 aacatgtggc gcataaaacc ttgcacccca ttcgtcggga ttccatgttg gttaaacata
    10201 aattgtttgg aaacggctgt tgcataaaat gctcggaaaa gtagtgccat tccatcaaca
    10261 acgagcaaat tttctcgatt ttcggtcata tataatcctc caatttcctt ctactgccat
    10321 ctattgtagc ataattataa ctggctcgca gaaaaaaagg agctttttac cagcttgctt
    10381 ttgtcacgcc gggtaattgt ccttgatgtg ctagttcacg aaaacgaatc cgcgacatac
    10441 caaatttacg catgtagccg tggggacgtc cagttagttc acaacgattg tgtagccggg
    10501 acggggaaga atcgcgtggt aatttgcgta attcatcgta gcggccttct gcttttagcg
    10561 ttcggcgaag ttccgcatat ttttccacga gcgcttgttg acgttcatgt ttggcaactt
    10621 ttgatttttt agccatgtgt ctctcctttc ttaaataata atcattacga tttacatcat
    10681 acgccgattt aattaggaaa gcaagtcttc tgttttaaaa aaaccgatat ccagttaaac
    10741 tgaatatcgg ttgtcctatt atttagttcc aactatcgga ccatacgcgt tagagaaacc
    10801 attactataa ggcactcctg ctttattttt acctgcatcc cagttcaccg accaagtcat
    10861 aatccctttc actggtgtgc cttttgcttg taaacgagtg aaaacatttt tgacgatttg
    10921 cggatctttt acataaccag ttgcggctgc atccacattg gctggtaaac cgaacacgaa
    10981 tttattagct gggattttca agtaaccacg agtcccatta ataaaggagt ccgccatata
    11041 atataagaaa gattctttta atgtatcatt attttgcgca atccattggt ttgtttcatc
    11101 aacccaaaca ccatcgccac cttgattgta tagttgtggc gcaatatagt cataataatt
    11161 agcaagtgag gttaggtagc tttcataggc actacctggt tttaaataag gaaattctgg
    11221 tgccatcgta attaggaaat ttttcccttc cgctttataa tgatctttaa cgatttttag
    11281 cgctgctggg ataaccgttt tattatctcc cgcggtaatc gcactttgtt ctaagtcgat
    11341 gtctaatcca tcaaagccat atgtttctac ttggcggata atttcattcg cgaacgcctc
    11401 ttcatcccca gcttttagtt ccacgtgtcc atctgctcca cctagtgcca aaagaacggc
    11461 ccgaccttct ttatttaatg cgccgacttg cgccctgaaa tcgctatcat ttattcccac
    11521 tggtttaaat gtcggaatgc gatttacccc gtcccctttc ataaaggaaa catctaccac
    11581 gttataagct ttcggtgtat cttttagggc gatatcagcc gaagtccctt gttgatagcc
    11641 atcatttccg gaagatttcc aactatgcca gtacccaact agcacctgtt tgttagaaat
    11701 atctggcatt acagaagcgt catccgtcgc cgcttgtgct gtactgccaa atgcccccag
    11761 tcccgcacca actaaaagta aagacaaacc accaaccatt acttgttttc cattcatcta
    11821 cttttccccc ttactttatc taccccaagc ttgctttttt ggagctacta gaaaataccc
    11881 atcataatga aaataaaact agaaaaacag caaaaaagcg aaattgatat agaccaattt
    11941 cgctttcaaa taaatgaatg tgtataagta accgagaaaa aatagcccaa ttaaaactgt
    12001 tttatttttt acttcgcatg ttgtggttct ggatctgcta cttttttatc tttgcgatgt
    12061 ggaatcatat tgaaaatgat attcagtgta attgctgtca cactgcccgc aacaattcca
    12121 ttactcgtaa ataagcgaac aaaggatggg aaggcattga acaaatctgg tacgactgta
    12181 acgcctaaac caacaccaac tgcacacgca atgattaaca agttttcttg agaagtgaaa
    12241 ttaacttttc caagcatctt aatcccttgt gcgacaacca tgccgaacat cgcgaccata
    12301 gcgccgccga gaactggtgt cggaataatc gttgtcactg cgccaatttt tggaatcaga
    12361 ccaagaacaa taaggaaacc agctgccgca taaatcactt tacgtgtttt aataccagaa
    12421 agttgaacga gtccaacgtt ttgcgaataa gccgtatagg ggaatgtatt aaatacgccg
    12481 ccaagcataa tcgcaagccc ttctgcccgg taaccacgcg ttaaatcttt ttgcgttaat
    12541 ttgcgttcgg taatatcaga taaagcgaaa tatactcccg ttgattccac catgctgaca
    12601 agcgcaatta aaatcatcgt aataattgcc ggccactcaa aggtcggtgt gccaaaataa
    12661 aatggttttg gcatatggaa ccaactcgcc tcactcacag gaccaagcga gatcccttta
    12721 taaagcgctg caaaaagcga accaccaacc agaccaatta aaacagcaat cgccttcgaa
    12781 aacccttgtc caaaacgata cactaaaata attaaaagta atgttccaaa accaaggccg
    12841 agattataca ttgagccaaa atcttttgct ccttctccac cagcaagatt attaattgca
    12901 acgggaataa gtgttaaacc aatcactgtt acaaccgaac cagtcacaac aggagggaaa
    12961 aatcgtacaa ctttggagaa aaatggtgct attaataata caaaaagtcc tgaaacaata
    13021 atcgaaccgt aaatcgcgcc aatgcccata tcttgtccaa ttaaaataat cggcgcaata
    13081 gcttgaaccg cacatccaag tacaaccggt aaaccaattc caaagaagcg gttaaccgtt
    13141 aattgtagca atgtcgcaat cccgcacata aaaatatcaa tcgaaactaa gtaagtcatt
    13201 tcttctccat taaaacctag tgctccacca attaatagtg gaacgattac tgctcctgca
    13261 tacattgcta gaacatgttg aaatcctaaa gctgcaattt tccctttacc taacatttac
    13321 tcctattcct cctctaaaaa taagatttct tcgttttcaa gtgaggcaat tcgtgctagt
    13381 gaataaactg gaatccctgt tttatttaat aattcgcgac cttgttggaa agatttttca
    13441 atcacaatac caattcccgc cacttttgct ccggcatgtt ctgcaatttc aagtaagccg
    13501 agtgccgcct gaccatttgc tagaaaatca tcaataacta aaatcgtatc atctgctgtt
    13561 aaaaattgtt ttgatacaga aatatcattc gattcttttt tagtatacga atagacagtg
    13621 cttgtgaata aattgtccgt taatgtcact gattttttct tgcgggcaaa cacgactggt
    13681 acggaaagcg cgagccctgc aaaaacggcg ggtgcgatac ccgatgattc aatcgttaca
    13741 attttcgtaa tccctaaatc ttggaaccgt ttagcaaatt catttcccat cgcttgcatt
    13801 aaaaccggat caatttgatg atttaaaaaa gcatctactt ttaaaacatt ccccggtaaa
    13861 accgtacctt tttcttgaat aaactcttcc agtaatttca aaacgattct cctttcaaaa
    13921 taaaaaaact gcttctctaa aaatagagaa gcagtataga agccaccaat tttcggagtg
    13981 acttctttat acaaactact catagtccgg ttatttacgg taaccaggta gaaactcgtc
    14041 gcccaatcgc aactattata taagtatttc ggttttaagt tatgttgttt attatagctt
    14101 tctaaaggag cagggtcaag ctaatttttt acttattgaa ttggtaaaca taagcgtatc
    14161 ttttttctag taaatctagc aaatacgttg gatttaagcc ttctccagtt gtatctgtta
    14221 gaatctcgag aggtttcttc gttttaccaa atttatgcac atgttcagtc aaccacgttt
    14281 ttaattccga ataatcatcg cttgcgataa tcgcatcgat attcggaatt tctttttgca
    14341 tttggttaaa gaactgcgcc gcgtacatta aacctaatgc ataagacggg aagtaaccaa
    14401 aatcgccacc agcccagtga atatcttgca gaacgccatt tgtatcatta tctggacgaa
    14461 tgccgagata ttcttcgtat ttgtcgcccc atgctttcgg taaatctttt acttctaatt
    14521 caccgttaat aagtgctttt tcaagctcat agcgaatcat aatatgaagc ggataagtta
    14581 atgtatcagc ttcaattcga atcaacgaac tttcagagat gttcactgcg cggtaaaaat
    14641 cttccaaagt cacatgatca aaagccggtt ttgtaatcgc ttggaagtca gcataattac
    14701 ttttccaaaa tgctaaacta gaaccgataa taatttcata aaataatgat tgtgattcat
    14761 gaatgcccat tgatgcgccg tttgcaagtg gagtacctac aagtgctgca tcaaaatttt
    14821 gttcgtaaat cgcatgacca ccttcatgaa tcgtaccaaa aacagccatt ttaaaatcat
    14881 tttcattgta acgggtcgta atacgaacat cgccagtatt taaaccagtc gcaaaaggat
    14941 gcacggtttc atctaaacga cctgcttcaa agtcaaagcc cattttattc agaatgcgaa
    15001 tgctaaattc tttttgtttt gcttcggata ttttggtatt taaaatcgtc gcatctggct
    15061 tcacgccttc atttgcgatt ttttcgcgaa tcgccataat tccgtcgcgt actttttcaa
    15121 atacggaatc aagcacagat acggttacac ctggctcata ttgatcaagt aatgtgtcat
    15181 atttattttc ttcataaccc caatattcaa caaatttacg cttcatttca aggatttttg
    15241 ttaggaacgg ttcaaaagct gcaaaatcat tttgttcgcg agctgttgtc caagccgttt
    15301 ctgcttgcgc tactagttta gtatattccg cgtattcttt acttgggatt tttttgttta
    15361 aatcatattt tttttgagat tcttctaaag ttttaagagt gatttcagat agattttctt
    15421 tatcaaggtt aagtccagca ataaaagcag ccatttcttc agatgtttgc atattgaaaa
    15481 tctcttcaga tagaacgcca ataacatcag agcgaccttc cattcctttt gacggggcgc
    15541 ctgtacgaag atcccaataa actaatgcca gtgcttcttc cagtgcttcc atctttttaa
    15601 tatacgctaa aaattcctct tctaatgttt ctaccaaact taactcctcc attcaatcaa
    15661 tcttcttttt taggacgtgg ttttcttgga ccccagtatt gatataaatc tgtgcgcaag
    15721 taaccattgt ataatttccg ttttttcgtc gcttttttac cataaacttc ttcaaaaagt
    15781 tcataagagg taaggacata tactgaccat gtcggcatgc gtttataaac aatacccatt
    15841 tcgcggtaaa gttggcgcac tgcttcctcg tcttctaaac gttccccgta tggtggattc
    15901 gcaacaacga ccccgtactc atcttctgtt tgaaagtcag ctacttgtag ttgtctaaag
    15961 gtaattaagt caccaaggcc agcttcgacc gcattttgct ttgcgatttc aattaaacga
    16021 gcatcaatat cgccaccaat aatatttagc ggttgatcat agttagctaa atcttccgct
    16081 tcttgtctcg catccgccca aacttgcttc ggcatccaat cccatgtttc tgacacgaac
    16141 tcgcggttaa aaccaggcgc aatattttgc ccaattagtg ccgcctcaat tggaattgtt
    16201 ccagaaccac aaacgggatc ataaaatggt ctatctggat gccaactcgt aagtagtaca
    16261 agtgccgccg ccattgtttc tttgattggc gcactacctt gtgctaaacg gtaaccacgt
    16321 ttatgtaatc ccgcaccact agtatcaatt gttagcgtca cttcatcttt taaaatagaa
    16381 acttctaact taaataacgc gcctgtttcc atcaaacgac cagaacgacg atacttttca
    16441 ctgacacggt taacgatggc tttttttaca atcgcttggc aatcaggcac actataaagc
    16501 gttgacttaa ctgatttacc agccactgga aactgtgcat caagcggtaa ataatcttcc
    16561 caaggtaaag ctttcgtctt ttcaaatagt tcatcaaatg tcgttgcttt aaaaacacca
    16621 accacaattt tcacacggtc ggctacacga agccatagat tggctctagc aattgcagat
    16681 aaatctcctt caaaatatac tttaccgttt tctacttttg ggtcatagcc taaacgcgct
    16741 acttctttcc caacaattgc ctctaaaccc gaagcagccg ttgccaccaa ctgaaatgat
    16801 ttcattgttt cccatccttt aattaaattt ctaatgaaaa aagctgtttt aagaggagga
    16861 ggtttgtttt aaataggcat tcaaccaggt cgaacaccca ccttaaaact tgcgctccgg
    16921 ccttctaaaa cagccttcaa tgttaaatta aatcctgtaa ataacgctct gtaagccatg
    16981 ttctgttctt tactacgtac agggtaatag taaagagata accatctatc tgcgcaaaaa
    17041 tacatttgcg cctcgtccct tgttcttgat tcctcgggaa aagtgcccct accataagtt
    17101 tgagtttctc gctcgtgggg tttacctcgt tccacttccg agcatttctg ccggaacttc
    17161 gtcactgtgg caccttcaag gttataagac catatccgaa gacttaggtc attcacctgc
    17221 cgtcaaaccg gaaatccgga atgccctggc ttattgtttg accaggcacg atcactacgg
    17281 gcatcacagc accgtgcgag catggacttt cctctgcttc cataagaaaa cagcgattat
    17341 ccgaacgtta ttcatttatt cttaacttac ttatactagc atacctattc gttatcgtcc
    17401 agcttatttc caaaaacatg tttttctaaa ttagaaagac gctttagaat atcaaagttg
    17461 gtcgttccag caggttgtgc cgctgcttgg aaagttggag ctggttgtgt tgaagttcta
    17521 agtggagcat tatcaagctc ttgtacaagt cgaatatttt ccgcttgaag tgcttcgatt
    17581 tcttgcgtaa atgtactgta atctttaata accatgtcta aaaactcgtc aacatcttca
    17641 ggactataac cacgaagccc agttttaaat tctttttcca aaatttcttt acctgttaag
    17701 tgatactcaa attgttccga agtcatataa ctccacctct atctctattc ttacgtattt
    17761 ttgttctaat catatactta cccttatttt ttcaaatctc acaccatttg tcaatctatt
    17821 cgagtgtttt ttatgaaaat aactgtttac ttccatatta aaacgtttgg ttcatatcct
    17881 ctacaacttc ttggagtgca taaaaatcaa tacagtctat ataataatta gactgttctt
    17941 ttgcttgaat cgctcggtca taaaagaatt tcggcgaacc ttctttttct aaatcatata
    18001 caagtaatgc gccatccgta ttatcaataa taaaaccatc tcttgccgca aattgcgctg
    18061 gactttcata aggacgcttc gtaataaaag catggtaatc ggctttttct agtacttcgc
    18121 tcgcccataa ttggttcgct tcattccagt tagcactttg cttttcaaac ggttcaagga
    18181 ttgctagttt aatcggatag tctgctttta attctgcaac cacatcgcca gcccaaagtt
    18241 caattcctaa ctgaccagaa ataatcaccc attcaagccc atcttccacg agtggaagca
    18301 aatgccgttt aattgtttct tttatataaa ccgcttcatc tgcatccttt ttaaaaattc
    18361 ccagttcaaa atttttatac cccgtcactg cgatggattt cacatcaatt cctcttttct
    18421 ttttaagaaa tctctcactc tcgttagtgt atacttggta gattggtagt gatctaggaa
    18481 gtgtttataa aaagactttc cattaaatgc acttactgca gtcatttgaa cattatcaca
    18541 agcttgtctt aattgtagtt ctcctaaata aggaggacgc tctttgttta cccacggaat
    18601 agctaattct aaaaacgcat ccgcgctatt ttttgcttcg tcaacgaaag gtttcatatc
    18661 tttataaaaa tcaaacggct ttgcttcttc acggttactt aaatataatt cccaattttt
    18721 ttcgttttga agaagcaatt tttccgtacg gtttaaaagt tccattctat cactcttttc
    18781 ttcacatttt cagatacttc aagcatagca taggacgcaa aatcttgcct aaaattagat
    18841 tattagctaa aatatggtaa aatagacgaa ggtacgttct atttatgagg tagtttcatg
    18901 ccgaaaagag ctattttgca tttaattgat actatcattt tcatttttat ttgttataat
    18961 agatgatagt ctaaaattca gaatagaaat tttctgatag aggtgaaaaa aatggctatt
    19021 ggttacccta acggcaagaa gtatgcagcg agtcatgagg ttcttcctca acaaaaacgg
    19081 aaagctcctg taacttatgg taagcgtggt atgtctttgg aagatgacct aaatgatacg
    19141 attgcgtatt atttaactca cgaaatagca gtcatccaca aaaaacctac ccctgtccaa
    19201 attgtcagtg tggactaccc aaaaagaagt agtgccaaaa ttaaggaagc ctacttcaaa
    19261 acaccatcca caacagatta taatggtgtg tataaaggaa aatacgttga ttttgaagca
    19321 aaagaaacgc aaaatacaac ttcttttccg ttgagtaatt ttcacgatca ccaaatgaca
    19381 cacatggcaa acgtcttaaa acaagatggt attgtatttg tcattattgc tttccaaaaa
    19441 ctcggagaaa ctcatttcat tccctttgag aaattttatc cgttttggga acgtatgcaa
    19501 agtggtggaa gaaaatcagt tactatagca gaaatacaag atgtatcaga ccaaattcct
    19561 tatggtctaa atccaaggct tgacttcttg caatccatag acaaattata cttctagtca
    19621 aacctttttt aaaggagaga gatttttaat ggcagataaa ccgcagacaa gatctcagta
    19681 tcgcaataaa caaagtggtg gttctaaaaa gaaatcccaa aaacgaggaa aacgagtagt
    19741 agcgaatatt ttcaaaacta ttttctttgt gggattattt ttagctttct ttggtattgc
    19801 ggctggtgca actgtctttt acgattacgc aaaagatgca ccaaaactga ccgactccaa
    19861 gctacgagat ccactttcat ctaagttact tgataaagat ggaaaagttt tcgcagaagt
    19921 tggaaccgaa cggcgggaat atattgaata caaagatata cctgaaacac taaaaaatgc
    19981 aattctaaca acggaagatg cgcgttttta tgaacatgat ggcattgacc caattcgact
    20041 tggtggagca gtaattgcca atttgacaga cggttttggc gcagaaggtg caagtaccct
    20101 ttcgcaacaa atcatcaaaa tgtcctatct tgattacaca aataaaacac ttgcaagaaa
    20161 agctcaagaa gcatggttag ctcttcaatt agaagaaaaa tatagcaaga atgacatctt
    20221 agaaatttat gttaataaag tctatatgtc agaccgtgtc cacggcatgc aaacagcttc
    20281 cgaacattac ttcggtaaaa atttgaaaga ccttacgtta gctcaaacag ccctacttgc
    20341 aggtatgcca caaagtccga ataactacaa tccttatgaa cacccagaag cagcaaaaaa
    20401 acgtcgtgat caagttttaa caaatatgta tacacatgat aaaattacaa aagaagaaat
    20461 gaccgaagct caaaaaacat ctatcactac cggacttcgc tcgaaaaaag atcgtgaaga
    20521 taaaatttac aaatacgatt cttacgtcac acaagtgtta agtgaaattc caaaagaata
    20581 cgatgtttat cgtgatggtt taactatcca tacagcgctt gaccgtgatg cccaagaata
    20641 tacggagaaa atgctcaata cgaacgaaat tgttaacttc actgatgatg aaatgcaagc
    20701 cggtatagtg cttcaagata ctaaaactgg acgtgttcaa gcaatcggag gcggacgtaa
    20761 acaaaaagta actcggggat ataactatgc aacccaagta aaacgttctg ttgggtctac
    20821 catgaaacca attgctgact atggtcctgc ttttgaatat ttggattggt cgactgccca
    20881 tattttagaa gatgaaccat atacgtattc tggcggaacc cctattaaca actgggattt
    20941 cgcatacaaa ggaccaattt cagtaagaca agcactttac caatcacgta atattccagc
    21001 cctaaaaacc cttcaagctg ttgggctaga taaatccgag gaatttgtta ataaacttgg
    21061 catcacctat gatgaaggac aaaacgtaga atccaacgct attggagcaa acagttccaa
    21121 cccaatgcaa atggctggtg cctatgctgc attcggtaac aaaggaatct ataacaagcc
    21181 acacactgtt acaaaaatcg ttttatcaga tggacaaaca gaaattgaca cagaaccaca
    21241 aagtactgtt gctatgaaag aatcaactgc ttatatggtt tcagatgttc taaaagatgt
    21301 tctttctatc ggaacaggta catcagcagc cgtaccaggc gtacctgctg ctggtaaaac
    21361 aggtacaacg aatattccac ctgaattcac ttcgaagtac tactacccta gtggtgctgc
    21421 ccgtgactca tggttcgctg gatatacaac caattattcg attgctgtat ggaccggcta
    21481 tgatgacaag aaaaaatatg tttcagcaag tgaacaaaaa attgcgcagc ggatgtttag
    21541 taaattaatg gctcatgcat ctgccggtaa aactactgca gatttcaaaa tgcctagcaa
    21601 tgttgtttcc gtcccaattc taaaaggaag caacccaatt gcacgcgctg ctgcaggcac
    21661 tgcaagtgat aaagtaagtt acgaattatt cttatccgga accgctccaa ccaaaactgc
    21721 ttctactcca gaagacgaga agaaaaaagc agaagaagct gcgaagaaga aaaaagcgga
    21781 agaagataaa aagaaaacag atgaagagaa gaaaaaagaa gaagaggcta agaagaaagc
    21841 agaagaggaa gctaagaaaa aggctgaaga agaagccaaa aatcttactg cccctgccgg
    21901 cttaagagca agttataatg ccggctctaa gcaaatcaat gtttcttggt ctgcggtaga
    21961 tggtgcaacc tatgaagtaa cagtcaatgg ttctactacg acagtatctt ctacttccgt
    22021 ttcagtaagc ggaggtaatc ctggagacac tgtttccatt aacgtcgtcg ctgttaaaga
    22081 cggtaatcga agccctgcct cctctactac agttaaaatt ccagatagtt aatacaaaaa
    22141 gagcggaaga tgtttaaaca tcttccgctc ttttttatga tcttttcgca attaatttac
    22201 gctgttctaa cattaattca tttaattgcc gaaaacctaa atacgtatta cctcgcttta
    22261 atacatattc taaccgctca tctaaattga gtggttttgt ctccaacgtt ttaatttggt
    22321 ccatcaaatt atctagctgt actggccggt gattactcca aaataaaata gataaaaaaa
    22381 taccgagcgc atctctaacc gttacaggag atggtttttt atgcactttc aaatcagctt
    22441 ccatactttc agccaaatta gtcatatgtt tcgccaattt gcgacaagct cgctctgttt
    22501 catttttcca aggaataact ccaccacctt tggtaaaaaa ctgttgttct tgccaaaaag
    22561 gtagaccact aacataaatg gattctggat catattcttc taaaataaca tccggtgctg
    22621 ggaaatcagg atgtgttaat tctactgcat atttaaattc agccatcgaa tcccctcact
    22681 ttcgcttgtt tttttccttc tctgcataaa tagagtaagg gacaggtcgg gcattctggg
    22741 tttcttgctt tacaatgata tcttccaaag aaaatcatat aatgatgtgc atcagaccag
    22801 agttcttttg gtagctttct ttttaacgtt tcttccactt ctacaacaga atctttccat
    22861 ctacaaatcc ctaagcgttt actaattcgt tcgacatgtg tatctactgc gattgctgga
    22921 ataccaaagc caactgataa aacaacattg gccgtttttc tacctacacc tggaaggctc
    22981 tcaagttccg catgcgtctt tggtacttcc ccattaaatt cgattagaat tttctcggat
    23041 aatccttgaa tattttttgc tttattacga tataagccaa tagagcgaat atcttccatc
    23101 aattcttcca gtggaacagc caaataatct tctggtgagt gatatttttc aaacagcgag
    23161 gcagtcacgc gatttactaa cacatctgta cattgagcgg ataagacaac agccaccagt
    23221 aattcaaacg tatttttatg aactagctca cagtgtgctg ctggaaacat ttttgccatt
    23281 tcttctatgc ataatacggt ttgtttattc gataacaatt tgtgtacctc acccttttct
    23341 tttttcaagc cagtcgtata gaggaatcga acctgcgctt tttttcactt ccgtttggtt
    23401 aattgcttgg cttgtgcgcc cattttgatg aaattcttcc gctacacgct tggcatcttc
    23461 tattgtctta actccttgtt tcgaccagtt aagcagaatc ctatcaatat atcggaaatt
    23521 taatttttgc gaaataacag cttcttttaa tgcttctttg attaaatccg ggctcgttct
    23581 atcttgctct acccacgcgg ataacatttc tgcttccatt ggagaaagcg gtcttccaaa
    23641 ctctgcttcg aatagagtat ataaactggt ttgtttttct aactcttttt catgtttact
    23701 atctgcttcc ttgttttcat ataaagcgac tagtttaccc cagagtggtg ccaaattata
    23761 ttgttcagaa atcattcgtg aattatcttg gctttgttcg atagcaatca cacctttttt
    23821 caagagtgag tccatcgttt taattgtttc ttccagtgga agcgttgttc tattggttaa
    23881 catttccatc gacgggaaaa attctgcctc tgctgcaaag gattgaattt gaagtaatag
    23941 cactagttct acttcgttta agccaatggt tgcatagttt ttcactagca cttgcggtaa
    24001 tgtcacttgc ccttcagcca tccatttttc aagaattttt ggattcatat ttaacacctc
    24061 actacaaaat tataacatgg ttttcgaggg aaaaatataa aagtactgct aaaatcatga
    24121 aatcccgcgg aaaagattat tttcaattta aagtccacaa aaaaagtgaa gccagtatgt
    24181 tggcttcact ttttaactta cggatataaa cggtttagta aacgtgggaa cggaatggtt
    24241 tcacgtacat gttctgtgcc cgaaatccaa gcaactgtac gttctaagcc aagaccaaaa
    24301 ccggaatgtg gaacagagcc ataacgagct aagtcaaggt accagctgta ggcttcttga
    24361 tccaaatcga agtcttccat tctagcttga agcgtttcta aatcgtgaat acgttccgat
    24421 ccaccaatga tttctccgta tccttctgga gcaatcatat cagcgcacaa cacaacttga
    24481 tcgttttctg gatcttccgg catataaaat ggtttaattg cttttggata atgtgtaatg
    24541 aaaactggtt tttcgaagct gtctgcaatc gctgtttcat gtggtgcccc gaagtcatct
    24601 ccccaaacaa tatcatcaaa gcctaattcg tgtaaacgtt cgattgcttc tgtataagta
    24661 atacgcggga acggtgcaac cattttttct aaatgactaa catcacgacc aaggcgatct
    24721 agttctaagc ggcagttatc aagaactgct tttactagga atgccacgta gttttcttgt
    24781 acttgtaagc tatcttctaa tttgtaaaat gccatttccg gttcaatcat ccagaattca
    24841 attaagtgac ggcgagtttt tgatttctca gcacggaaag ttggaccgaa tgagaatact
    24901 ttaccgaaag ccattgctgc tgcttccatg tacaattgac cactttgaga tagaaacgca
    24961 tcttcatcaa aatatttcgt atggaaaagt tcggttgttc cttctggagc acttccggtc
    25021 aagattggtg gatcgatttt taggaatcct tctttattga aaaactcata gctagcgcgt
    25081 ataatttcgt tacgaatttt cataatcgca tgttgacggt tagaacgtag ccataaatga
    25141 cggtggtcca ttaaaaattc cgtgccatgc tcttttggtg taattggata atcatgtgat
    25201 tcgctaatta cttctacacc agatacagcc atttcataac caaatggtga acgagtatct
    25261 tcgttaattg tacctgtgac atataaactt gtttcttggg ttaatgcttt agcagttgcg
    25321 aaaatatcat cgccaacttc tgcttttacg acaacgcctt gcataaatcc tgttccatca
    25381 cgtaattgta agaaagcaat tttaccactt gaacgcttat tcgcaagcca tgctccaata
    25441 gttacttctt ttccgacaaa ttcggatgct tgattgattg taattttcac ttgtctacac
    25501 tccctatttc ataaaacttt tgattcgatt tatagcttct tggaataagt ctggatttgt
    25561 tgcataagaa aggcgtatat aatcaggcat tccgaatcct gagcctggaa tgactgcgac
    25621 tttcgcttct tctaaaagag ctgctacaaa agcatctaca tcctgaaaac cttttttatg
    25681 tgccgcttct tttacttcaa taaagaaata aaaagcgcca tctggttttt tcggtttaaa
    25741 acctggaatg ctacttagtt ctggataaaa gcgttccatt cgttcttcaa aagctttgta
    25801 cattttttct ggaacttctt gactaccaac atacgcttca agtgcagcat actgggcatt
    25861 agcagttgga ttacttgtta aatgatccgc taacttactc attccagcaa tgatttcttt
    25921 atttgcagct gcgtaaccaa ttcgccagcc cgtcattgaa tatgctttag atacaccatt
    25981 aataacaata gttaaatcat acaaacggtc actcaaactc gcgatagaga ctaaatcagc
    26041 tttgttacca tagtataatt tttcgtatat ttcatcagat aaaatgtaaa tctgatgttt
    26101 ttcagcaact tcaccaatag caataagctc ctctttcgta tagcacatac cagaagggtt
    26161 attgggtgaa tttaaaacga ttgcttttgt ttttttcgtg atagcttttt caaaatttgc
    26221 tgctgaaatt ttgaaatccg cgtcaaaacc agtttctaca aaaacaggaa taccacctgc
    26281 taatttgact tgttcgggat aagttaccca atatggaact ggaataatga cttcatcgcc
    26341 tggatctaaa atcgtttgaa acgcagagta gagtacatgt ttagcaccag tacctacgaa
    26401 aatctggttc gtttcgtagt ttaagaactg atctttttgg agcttatcaa caatcgcttg
    26461 ttttagctcg atgattccac tagaaggagt atatttggtg aatcctttgt tcatggactc
    26521 aattgctgca tcgataatat tctgcggggt attgaaatct ggttccccag cacctaagcc
    26581 gataacatca attccttctt gtttcatttg ttttgcttta gccgtaatcg caagtgttgg
    26641 cgacggggcc actcctttga cacgttttga taacggtaag tccattttat tccctcctcc
    26701 aatttagtta caagttttca atctctctgt accattcacc tgtttcaaag ttaatgtcaa
    26761 agtagtttag cttgtcattc ttatctaagt aggcaacttc ccaaataggc gtttcttttt
    26821 ccattcctaa attcacatgt aaaattttct ttggattctt ttcttttgtg actttatcgc
    26881 gtgcttgttg ttctgtaatc ccatcagatg cgaatttaac atatactttg tcggattttt
    26941 tctttggaac ccaaacaatg atattcttat tcttactgtt cttaccagtt aatacgtaat
    27001 acacttcttt tggcccatta taaagataaa attgatctgt tgtttttaaa tcaacttggc
    27061 cacttattcg gtctaaggct tctgtttctg cattggttac tggtttttct gcatatctaa
    27121 agtacagaaa agctgctacg acaagcacaa taattatgcc gagaataatc gctatccatt
    27181 tgccaatctt acgcttaggt tttctatttc gcaaaataat ctcgctcatt tctatttcta
    27241 aattaccgga attcctccgg cgatatgcat tttcattttc gcatagatac attatagcaa
    27301 tagcggccta agatttgaag tcatatcagg aaaaatttaa ccttccttaa agaattcact
    27361 cacttcttct aataaatccg cctgtttgcc tttcaagatt ggcgcgcttg ggattgactc
    27421 taaaaatgct tttccaaatt ttgtcgtatc tactcgatta tcaaaaacaa atacgattcc
    27481 gcggtcggat tctcttctaa ttaaccgacc aaaaccttgc ttaaatcgca gtacagcttc
    27541 aggtagagaa taggtttgga aagcattctc cccgcgttct ttgcgaaggg atatttgtgc
    27601 ttttgtataa gggtcatcca tcggagcgaa tggtaatctc acaataacta gacatgacaa
    27661 gtcttctcct ggaatatcaa tcccttccca aaagcttgtc gtaccaagca aaatagactt
    27721 atcaaacatt tggaattgtt ttgtcagtcg tgcggcgctt cccgctgaaa ctccttgcgc
    27781 tagaaggaca tactcttcta atgatttttc atttttcata tgataatacg ttttttgtaa
    27841 catatcagaa gcggtgaaaa gaacgagcat ccgtccattc gttttcactg ctatgtggcg
    27901 aatatatttc gcaagttcca aggtatatcg ctcaattggt gtgtctttaa ttgggggcat
    27961 atcatctgga atcatcactc gcgcattttc tttataatca aacggtgaag gaatgcgttt
    28021 ttccataatt tgttcttctt ccagaccgag acttttccgt aaataatcaa acttcccttt
    28081 tacggttaaa gttgccgaag tcatgatgac actttctttt ttagcaaaaa actcttttcc
    28141 aagtgtcggc tccacttcca tcaagacagc ttttagacga atgctagaaa tagaatgatt
    28201 tttgtctgct tgtaaataaa tggtcaaaat aggcgacttc ttatgcaaca tttgctccag
    28261 ttgttttacc atattcttcc aatcaagtaa aaaagcatac atttcttcca aaaaggcgct
    28321 ctctgcctca cctagttcat tttcttcttg tttcccctgt tctaacaatg tttccatatt
    28381 tttttcggac tcttttagca aatgtaatac tttttcagca gcgtaataaa ccttgtcatt
    28441 ccaagcatct ttttcgctgt tttctactaa gacaacttct tgtaaatttt tacgcgcgaa
    28501 gtttaactgc attttcagaa gaccgaaaaa ctcttccacc gcatcactta acttcattgc
    28561 cgcaatatct aaatcatata aactgtctgc ttctgggaaa gccattgcaa gccttgtgag
    28621 aagggaatat ttttctaaag agcctagctg attcaaaaaa tattttattt ttcggtaaga
    28681 cagaacaaaa cttccttgca tacgagcact atccgcaaaa tgatgggctt catcaattac
    28741 tgcaaaagca tacttaggca atgtttctct tcccgaaaaa tggtcattta aaagtagtgc
    28801 gtgattaaca atgactaaat ctgcattttt ggcttgtttg atgttgaatt tatagaaatc
    28861 gtgtgcgagc caaggatcat gtttttcaga taaaaaccag cctgtgtgct tcatccgatt
    28921 ccagaataac tccccgccgc tagataggtt cacttcatca atatcaccag tcgttgtttc
    28981 cgtcagccat acgagcaatt taagcttcgt cacaactaca tcatattgcg tatcgacttc
    29041 ttgaagtaac tgctcaaatt taaacaaatt caaataatga tcgcgccctt ttagtaagct
    29101 agctttcact ttgaatcctg ttaatttcgt taagagtggt acatcttttt caaacaattg
    29161 agcttgaagc aagttggtgt atgtactaat aactaccggt aattcagctt gtttcgcttg
    29221 gtaaatagct ggtaaaaagt aacctaacga tttcccaatc cctgttcccg cttcaatcaa
    29281 ggcatgtttt cctgatttca tcgcttggaa aaccaaattc atcatttcaa attgaccact
    29341 tcttgcataa agtggcgctc cagctttttt gaatagtgcc attttagctt cgtctgtttc
    29401 aggaaattca agtaaatctg ctctactata ggtgggcttt tcgacttctt ttttgcgaat
    29461 aactagtcca cgatgttcta cgaatgctgg atcaagtggc ttgttttctc gctcttttcg
    29521 catttcaatt tcaaataaga gctctggtaa atagcttttt agactgccag aaatcgttgt
    29581 catttgacga atgacaggta gtggtaaatt ttctagcttt tctaagagaa ggagtagtaa
    29641 atctgctgtc acttccgcat cactatccgc acggtgcggt ttatcgtgcc caagattaaa
    29701 ttcatcggac aagtcttgta gtttataact atcgatgccc ggatacataa ttctagctaa
    29761 ttccacagta tcgagttttt tcattttgcc aagagaaatt cctgcacgcg tcatttctcg
    29821 ttctaaaaat gtccagtcaa atgacacatt atgtgccaca aaaatagtat cttctagtaa
    29881 attcgcgata atcggtgcga catcttcaaa cagtggagca tttttaacgt cttttgggga
    29941 gattcccgtt aattcttgaa taaacgcagg aatcggtttt tctggattta aaaatgtcgt
    30001 gtatgtttcc agacgttttc ctgattcaac aaagcaagca gcgaactgga taatccggtc
    30061 ctctcgtgaa gcttgatttc ctgttgtttc taaatcgacg actatatagc gtttctgttt
    30121 catctgctcc acctctttcc ttcactgctt ttattcaaaa ataacgatgc aaacaaacga
    30181 gtagcttgag cagaaatcca ctcaagctcc ccgaactgat tataaagtcg tatgcgcttt
    30241 ttcttctgga agaatcattt caatatgatt tttttcatct aaaacaacta ttttgggttc
    30301 atgtgttttc gcttcttcgg tagtaaacat tccgtaactc ataataatta ctacgtcgcc
    30361 aacttggacg tgtctagctg cagctccgtt tagacaaatc acaccacttc ctggctcacc
    30421 tgggataata taggtttcaa ttctagcacc gttattgtta tttacaattt gaactttttc
    30481 gtttggaagc atatccactg cttctaaaat agcagaatca atcgtaatac ttccaacata
    30541 atttagattg gcttctgtta cagtcgctcg gtgaattttg ccattcatca ttgttctaaa
    30601 cattttttac cgcctcttca catttattaa ttcattatca attaaacgag ctttcgaata
    30661 ttttactgcc gctgcaatga ttattccttt ggtccagtct gttactggtg taaattcagg
    30721 ataggaatag agcgctaagt aagcaatgtt ctcatgggat ggttgctcat ttattttatc
    30781 tgtcatgact tggactattt tagcctcatt tgtttcccca gattcaataa gttctcgccc
    30841 tagttgtaaa gcttcatgaa tcaccggtgc ttcttttcgt tctttttctg ttaaatagac
    30901 atttcgtgaa cttttggcaa gtccatctgc ttctctaaca gtcgcaatga ttcgtaaatt
    30961 tatagggaaa aagtagtctt ctactagacc tgaaacaacg gccacttgtt gagcatcttt
    31021 ttgaccgaaa taggcgttat ctgggttcac taaatgaaat agcttcgtta aaaccgttac
    31081 tactccgtca aaatgacctt cacgatcagc accatcaagt acagaaactc gtttgatgac
    31141 atgtagtttg gttgctagtt cggttggata gatttcttcg actgtaggta caaataaaat
    31201 atccacgccg ccttcttctg cgagctttgc atcgtgcgct tcatctcgag gataagcatc
    31261 aaagtcttcg ttcggaccga actgggttgg attaacaaaa acactcataa cgacaaaatc
    31321 tgtttctttt ctcgcatggc tgacaagtgt catatgtcct tcatgtaaaa agcccatcgt
    31381 cggaacgtaa ccaattgttt tattcgcttt tttttgctct aaaatagctt ctttaaggtc
    31441 ttgtttattt cgaataatta acatttgcta ttcccttcca taaaggcctt ttaagtcttc
    31501 ttcagccatg gtaaagctat gtttcacttc tggaaacgtc gctgctttta cttcttttac
    31561 gtagcttgct agtgctggtt cgattctttc atcaatgtcc gcatacgctt ttacaaattt
    31621 ggcgcgacga ctgattccat aaccgataat atcgtgataa acgagtactt gtccatctgt
    31681 ttctacgcct gctccaatac caattgtagg gatagaaagt gctttactta ctttttcagc
    31741 gagttgacgt ggaattgctt caagtacgag tgcaatcgct ccagcagctt ctacagctaa
    31801 cgcattatcc attagctctt gtgcttcttg ggcagattta gcacgtactt tatagcttcc
    31861 agttaagcca acactttgcg gggttaagcc aagatgcgcg acaactggag cacctgcttc
    31921 tgttaggcga gcaattttgt taacgacttc tcctgctcct tctaatttta cagcatgagc
    31981 gccactttct tggataatct tccgtgcatt ttggatagtt tcatccactg aaccatgata
    32041 cgtcataaac ggcatgtctg taacaacaaa tgtatctggt gccccgcgct tcacggcttt
    32101 tgtatgatga atcatatcat ccatcgtaac tggtacagtt gaatcgtagc ctaatactac
    32161 cattccaagt gaatcgccga ctaaaatcat atcagcttct gcttgttcta cattcttagc
    32221 agaaggatag tcatacgcgg ttatcatcgt tattttctct ccgttttcct tcatagcaaa
    32281 aaaatctact ggtcttttca ttttcttagc tccttttcgt ccctgttaaa ttactttaat
    32341 caaggcaaaa aacatatttt tttagtagca ttagtatgat ccggtaaagg tatcatccat
    32401 tcattgctac catatgtata ataacataaa tagatgctta cttaaagtat gtaaattgaa
    32461 gagaggccta ctctgaaacc tctccactta ctttattcat ccaattcgtt aatttcgccg
    32521 gttcatccgt tgctgcatag gtagacgcta cttttccatc ttttaaataa accatcgttg
    32581 ggacagaatc gatgtccatt ttttctaaaa gagcaatcat atcatcgcga ctcttttcgg
    32641 aggctttatc tgtgttataa taagccattt tttggtctgg ttgtcttttt ttaagttctt
    32701 tctttaacat aggttgaaat gcttggcaat cttcacaggt cggacgccca acgtaaacaa
    32761 agccagttgt tttatcggcc attttttgct tgaaatcttt ggtggaaatg gttgttagaa
    32821 aagaggcgct ttctttttct gtttgatttg ctttctcttc cgtttctttt ttattatcgc
    32881 cgcatgctcc aagtgtaagg attacggtaa ttgatgttaa tagtaatagt atttttttca
    32941 tctaaacagc tccttcgcat ttattgtact tgatttttcc caaaaaagaa aaacccgaaa
    33001 aagtgatttt cacactatgt tttcgagtta aaagatatgt ttttgggtat tttattaggg
    33061 ttaaaacgtt cttttctata gtgtttcgtt atttttcatt atctagcaaa atatctgcgg
    33121 aatagattga atgtacttca ccgagtgcgt cttggagtaa gagtacacct tcatcagaaa
    33181 tcccttttac ttgtccatga attttgcctt ttgttgtgct agcagttaat ttttcgccaa
    33241 atgggattgc tttggtttcc caaagtaatt ttatcggtgc gaatccttta tctagaaaaa
    33301 gctcataata tttttctaaa gaagtgagaa tttcttgtag taaagctttt cttgagacgc
    33361 tttcgcctaa ttccagtttc agagaactcg ctttgtcttt gatttcttct gggaattcct
    33421 gttgatttac attgattccc atgccgataa ttactgcatg aatcgtttct gcctccgctt
    33481 gcatttccgt taaaacgcca cagatttttc gtttaccaat gtaaatatca ttcggccatt
    33541 tgattttcgg ttcgagcttt gtgctatttt caatcgcttc tgtgattgcg agtgaggcga
    33601 taaacgtgaa ctggggtact ttttgaatag ggatttgtgg ttttaaaatt acactcatcc
    33661 aaataccttc cccttttttg gaactccaag ggcgaagcaa gcgacctttt ccagctgttt
    33721 gctcatcggc tacgataacg gttccttcag ggctagattc gatttgctga tgggcgatga
    33781 tttgtgtaga gctaaccgat tcatggattt ccaaatgctg accgataaat ttggtttcta
    33841 aaccgagtag tagtgcatct ttcgtgtact gttctgctgt tgctgacaaa cggtaaccac
    33901 ggtttctgac tgcttcgatt tcaaatcctt ctttacggag agcttccatt tgcttccaaa
    33961 cggctgtgcg cgagcatcct agactatccg caatttcttg ccctgataaa taagtaccat
    34021 cactttctgt aaataaagca agtaattttt ctcgattatt cttcatgata gcctagccac
    34081 cttttaatct gaattttttc attgtttatt tcattggaaa ggacaccaca ttccacttta
    34141 tcaagcgtct cttttaccca tggacctgcg ctttctccag accattttaa taaatcagct
    34201 ccagtaatag ctaagtcttt tttggagtga attggtaacg cctcgtatgc ttgacttact
    34261 ttatgttggt tgttttcttg ccctcgaata acatttagtt catttactaa tgagaaaact
    34321 gccttgccag catgataaag ttcttctgtt agccatgtct ctttcatgtt tagcgcgtat
    34381 tgatatgctt tattcacaag ttgaattgtt ttattgggta atttccaagc tttaagaaat
    34441 gcgttaacat tgttaggttt gacagcaacg acgagtccaa gccaaatcga ttcttcggtt
    34501 gttcgttttt cccagtccca actagcaaac tcgcttagtg ctgatttctc gtcttttaag
    34561 cctggtaaat aagtttccat tttgactttt aaaagtagtt ctatcgcacg ttttgctgct
    34621 ttgcctttca tcatttttag ccattcaacc gtaattcgtt caacggaagt atgctgtaac
    34681 aactctattt ggctttctaa agctttttcg gtttctttat caagctcaaa gtcaagttga
    34741 ctcagaaagc ggactgctcg catcattcta agcgcatctt catgaaaacg ttcggaggct
    34801 ttaccaactg ctttgatttc tttattttga atcgctagtt gcccagaaaa cgggtcttgt
    34861 agcgcaaaat gttcatccat cgcaatggcg ttcatcgtaa aatcgcgacg ttttaaatcc
    34921 tcttctaggg agcgaataaa ggttacctcg cttgggcgcc tgaaatcttc atacgtccct
    34981 tccgttcgaa aagtggtcac ttcataaaat tcattatttt ctctaactgt aacagtccca
    35041 tgtgcaatcc cagtgtcata acttgtctga aaaatctctt ttacttcttc tgggaaagca
    35101 ctagttgcaa tatccacatc ggaaatcgtt ctatttagca agtaatctct gacagatccg
    35161 ccaacaaaat acgcttcaaa acccgctgta gttaattttt gcaatacagg aagcgctttt
    35221 aggaaaacgt cattcatctg tcatcgctcc tttattcatc attccgtctt aagtctcgcc
    35281 aatctaggaa accagctcct aaaccacgaa ttaaaatttc tgctgtgcca atatttgtcg
    35341 ctaaaggaat ttcgtataca tcgcataatc gaataagcgc cgtcacatct ggttcgtgag
    35401 gctgcgcagt gagtggatcc cgcaagaaaa taactaagtc cattttattt tctgaaatcc
    35461 gcgcaccaat ttgttgatcg ccaccaagcg ggcctgattt aaaacgatgt accgttaagc
    35521 cagttgcttc gataatgcgt aaacctgtcg tcccggttgc atataattga tgcggttcga
    35581 gcaaatgttt atatgcagtt gcaaatccaa ccatcaaatc tttcttttca tcgtgcgcga
    35641 ttaatgcgat atgcatctca ttcacctatc cttagtctaa aatattttct aagccataaa
    35701 taagtgtttc aagttctttt gttttacgta cagaaagtgc cacgccagac ataaaggaaa
    35761 ttcgatcata agagtcatgg cgaattgtta atccttgtcc ctctgctcca aaaatcactt
    35821 cttgatgtgc tacaagtcct ggtaaacgca cactatgaat tcgcatacct tcatattctg
    35881 cgcctctagc tccttcaata agttctactt catctgctgc accttgttta acgaattcac
    35941 gcgtttctgc catcatttcc gcagttttaa cagccgtacc acttggcgcg tctaatttat
    36001 tgtcatggtg caactcaata atttcgacgt tcgggaaata cttagctgct ttttgtgcaa
    36061 attgcatcat taaaacagcg cctacagcaa agtttggcgc aattaaagca ccgatttttt
    36121 tcgattctgc aattgatctt agttcactaa tttgttctgg tgtaaaacct gttgtaccaa
    36181 cgaccgcacg tacgccgtgt tctaaaatcg ttttcgtgtt actataccct actttagggg
    36241 tcgtaaaatc aacgacacaa tccggtttta tttcttctaa catctcgctt aaattaccaa
    36301 aaacaggtac atctaacgag ctaaattcca ctatttcatt tatatttttt tcttttggtt
    36361 catggtcaag tacggctact aactctaaat ctgcttctct taaaacagtt ttgacaacct
    36421 cgtgtcccat tcttccttta aatccagata ctgctactct cattttgctt tttcctcctt
    36481 ttttgtccaa cgatctttat cgcgttcttt aaattttgcc atgaccgtat cgtgtgcttt
    36541 ttccatatca atatcaagtg agttggccat gcaagtaaga acaaaaaggc aatcacccag
    36601 ttcctctgct acagttttag taggttcact tgttttcttc ggtttttcgc cataataatg
    36661 gttaatttct ctggctagtt ctccggtttc ttctgtaatt cgggccatca ttgctagtgg
    36721 ggaaaagtaa ccttcctcga atccaccaat gaaatcatcc acttcttttt gtatttctgc
    36781 cattgttttc gccatcggtt ttcccccttt atgtggtaaa ctaaaataga ttttaagact
    36841 aattgttaac ttcatttcat tatacctaaa caaatacgtc caagtccatg attttttact
    36901 tacatattaa ataggtttca gggaggaaaa aagttatgct aaaaacatta cgcacgaaaa
    36961 atatttgctt tattatgctt ggtacggcga tttacgcatt tggcttagtt aattttaata
    37021 tcgccaataa ccttggtgaa ggcggtttag ctggagtaac cttattcctt cttcacttct
    37081 tccaaattga tccagcgtac tctaacttaa ttttaaatat acctttgttt atattaggtt
    37141 ggcgagttct aggcaatcgt tccctcattt atacgggtat cggaacggtg agtttgtcct
    37201 tatttttatg gattttccag cgaatacctt atacgctaga tttacatagc gatttacttt
    37261 tagtcgccct ttttgctggt ggctttagtg gtattgggct tggcctcgtg tttcgctacg
    37321 gtgggacgac tggtggtagt gatattatcg ccaaactgct aaatcatacg aaaggcatta
    37381 gcatggggcg cacgctattt gctattgatg caattgttct cgttgcctca ctctcctatt
    37441 tagatgtccg tcaagttatg tacacgctcg tcgccgtatt catcggctct cgcgtaattg
    37501 attttgttca agaaggagct tatgcggctc gcggtgcgct cattatttct aaagataatg
    37561 acgcgattgc ttcccatgtg atgctcgcga tgaatcgcgg ggtgacagtg ttggaaggtc
    37621 gcggtggctt ctctaaaaaa gaccaagacg tcctttatat cgtcgttgcg aaaaatgaaa
    37681 taattcaatt aaaaaatatt gttcaagcaa ttgacccaca tgcctttgtt tccgtcagtg
    37741 tcgttcatga tgtgatggga gaaggtttca cactcgatga aaacaagaat cctatctact
    37801 aatgtattta cttggctcat agttttctaa agccaaatcg acggtgtttc caagtgctaa
    37861 atccgctaaa agtttgccaa cataaggccc ggtagttaaa ccagaagcac caagaccatt
    37921 cgctaaaaag actgactcaa atccaggaag ttgaccaata agtggcgcaa aatcaggcgt
    37981 gtatggtcta gttccgaccg ccacatgggc cactttactc gctaaatccc cttccataaa
    38041 ctggctgact tctgttagta tttctgcctt accttctact gttggtttcg tatcgaagcc
    38101 agcagttttt tcatgcgttg caccgacgat aattttccca ttatcaaaag gaacaattga
    38161 tttcgcgctc ggtggtaaaa ttactggcca ttcatccgtt tgaaattcgc taaaatcaag
    38221 ttccagcaat tgcccttttt gcgctaaaac ttctgtatga aaactcgcct cgtctagcaa
    38281 ttcttttaac caagcgcctg ctgcaatgat taatttgtcg taatgttcat cttccccgtc
    38341 aacacgaact tttccgtcag tagaaaaatg cgctcgcccc gacttgattt ttaccccatt
    38401 ttcttttgcg gcataaagta gcctttcaca aaataaacta ccgttcactc gtgctgctcc
    38461 gcttacatag accgagccaa atcccggttt aactaacgga aatttttgct ttgtttcctc
    38521 ttctgacaac tttacaattt cacccataac ttccgcatcg aggcgtcgtt cattcgcaag
    38581 attaaacagt tctgttactt tttcttctgt ctttcgaagt gcgagcacac caacttgttt
    38641 atagcccgaa ttccgcccag tatctccttc gagcgtcccc gccaattcct tataaaaggc
    38701 ggcactattt tttgcaagct cataccaata tttgtttcgc cttttagaaa gccacgggca
    38761 aattattccg gctgcagcac gcgttgcttg tcccggttca tctgaatcaa ttagcgttac
    38821 ttgcacgttt tcttttgaca ataaataggc ggcactagct ccaacaattc ccccgccgat
    38881 aatcactatt ttttgcatcg ttacacccct ctatatcaat tgtgacacaa gttgactttt
    38941 ttataactct ttgtaataat atgtgaaaat agttaagttt acaaactact aaaaatcctc
    39001 tacatcattc tatccattgt actgaaatcc agctttaatt acaaaaaggc agattttagc
    39061 ttatctcgtc gtcattacca catatcctct tagagaacgc tttcgcccat tggttggttc
    39121 tttgtactgc gtctcagcta aaaattcatt tatttttcct tctgcctata ttaacagttc
    39181 agctgattag ttatgctgag atatgggaga tttttttatg ccaaatattc ttgattcatt
    39241 atggaacagc atggcgcttt ttttatcagc gctttttttt cacggaatgg cactgcgatc
    39301 tattagagaa aaaaagcctg cttggttcca aattaaattt tctaatgaaa ttattaatta
    39361 tgcactgggc atttactacg gccttctagg tgtttatttt attatccgcg gattacccgg
    39421 cacagattct gggatttata cagatatgct acttaatatt ttaattgtcc tgcatttatt
    39481 ttcttcggca ggtcctgcta ctatcgcact attactaatt gtcgcaggaa aactttttct
    39541 cggtgatgcg ctgtttgcca atttgattta cgcgttttta attatcggtt ttcactttgt
    39601 atgcatggaa gtcgctaaac ttcgacttag ttccgttcaa aaagtcgttt tagtcaaact
    39661 tagtgcgatt ccccttatgc tattttattt acatcaaaaa atacatttat tgtataccat
    39721 aaatgactta cctgtttgga tactctattt tttggtttct ttttttatta cgtttattat
    39781 tgtttcagcg gcttattata tcgatacatc gaataagcta atttatgatt tgcagcaatc
    39841 caccatcctt gacccgctaa caggtttgac gaatttccgt cat
//
LOCUS       DASEAA010000007        34639 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.007, whole genome shotgun sequence.
ACCESSION   DASEAA010000007 DASEAA010000000
VERSION     DASEAA010000007.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 34639)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34639)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34639
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.007"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(40..891)
                     /locus_tag="U0342_000302"
     CDS             complement(40..891)
                     /locus_tag="U0342_000302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2421683.1"
                     /translation="MSNGSIINRIEGILNDLPKSEKKIGQAVLANPEFTTTASIHKLA
                     QQADASGAAVIRFCKSIGLQSFPELKRQLSLDLAQPQKKGYYDIEPNEDFHTITEKLV
                     SNMIQTMNDTASQLDEAKVLEACELLGEADTIYTYGVGASWLVAEDISQKWLRAGKHV
                     LATQDAHVLAMAFATGKKKAVFIAISNSGETSEVLQLVDQAKLNNVIVISLTRFGSNK
                     LKEKADLSLETSRAPEAEIRSTATSSRQAQLLVIDILFYYYASHHYDEMIQQIKHSRE
                     ATNRFRE"
     gene            complement(979..3390)
                     /locus_tag="U0342_000303"
     CDS             complement(979..3390)
                     /locus_tag="U0342_000303"
                     /EC_number="6.1.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465185.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine--tRNA ligase"
                     /protein_id="HEM2421684.1"
                     /translation="MTFNHKKMEPKWQQYWSEHNTFKTTEDKNKDNFYALDMFPYPSG
                     AGLHVGHPEGYTATDILSRMKRMQGKNVLHPIGWDAFGLPAEQYAIDTGNDPEEFTAL
                     NIANFTRQIKSLGFSYDWDREINTTDPEYYKWTQWIFEKLYEKGLAYEAEIAVNWCPA
                     LGTVLANEEVIDGKSERGGFPVFRKPMRQWMLKITAYADRLLDDLDLVDWPENIKDMQ
                     RNWIGRSEGAEVTFKIKDSDETFNVFTTRPDTLFGATYTVFAPEHELIEKITTPEQKE
                     AVEAYKKQVELKSELERTDLAKDKTGVFTGAYAINPINGEEVPIWIADYVLIQYGTGA
                     IMAVPAHDERDFEFAQQFGLNIRPVLEGGDVTKEAFTGDGPHINSDFLNGLAKAEAIT
                     AAIDWLEKEGIGSRKITYRLRDWLFSRQRYWGEPIPVIHWEDGETTLVPEDELPLLLP
                     KATEIKPSGTGESPLANLHDWVNVTDKNGRKGRRETNTMPQWAGSSWYFLRYIDPNNS
                     EAIADKEKLAEWLPVDVYIGGAEHAVLHLLYARFWHKFLYDIGVVPTKEPFQKLFNQG
                     MILGENNEKMSKSRGNVVNPDEVVEKYGADTLRLYEMFMGPLEASIAWNENGLEGARK
                     FLDRIWRLLVTEEGTLAEKVTTDANANLEKAYHHMVKTVTNHYENLRFNTGISQLMIF
                     INEAYKQDTIPKQYVEGFVQLLSPIAPHLAEELWEILGHTETISYVAWPTYDETKLVE
                     DEVEIVLQVNGKVKSKITVAKSLEKEELEKIAQEDNKMKENLEGKTIRKVIVVPGKLV
                     NIVAN"
     misc_binding    complement(3464..3665)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            3794..4759
                     /locus_tag="U0342_000304"
     CDS             3794..4759
                     /locus_tag="U0342_000304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465186.1"
                     /note="This family includes YhcC from E. coli K-12, an
                     uncharacterized radical SAM protein; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01212 family radical SAM protein"
                     /protein_id="HEM2421685.1"
                     /translation="MKQTNPFVYSNDNKRYHTWNYCLREEFGQKTYKVALDGGFDCPN
                     RDGTVAHGGCTFCSAAGSGDFAGNRALDLKVQFQQVRDKMQTKWKDGKCIAYFQAFTN
                     THAPVAELREKFETVLNEPGVVGLSIATRPDCLPDDVVEYLAELNERTYLWLELGLQS
                     AHDETGRLINRAHDYDCYLEGVHKLQKHNIRICTHIINGLPKETPEMMMETTRKVVES
                     GVDGIKIHLLHLLKGTPMVEDYKKGDLEFLTRDGYVNLVADQLEILPPEMVIHRITGD
                     GGVDDLIGPVWSLNKFEVLNAIDAELVRRDSWQGKHYQPVEVISE"
     gene            4756..5334
                     /locus_tag="U0342_000305"
     CDS             4756..5334
                     /locus_tag="U0342_000305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2421686.1"
                     /translation="MNLRGILPFAHDTLRKVVRPGDYVIDATCGNGHDTLLLAELVGI
                     NGHVLGFDIQQMAVDATKARLENAGVSSQVELVCASHARIPAYTSRPVRAAIFNLGYL
                     PGGDKEITTTADSTLESIGHLMQLLEVGGVIILVIYHGHPAGKIEKDAVVTFCEAIPQ
                     QDFHVLSYQFINQKNDAPFVIIIEKRKPRQAN"
     gene            complement(5356..7221)
                     /gene="asnB"
                     /locus_tag="U0342_000306"
     CDS             complement(5356..7221)
                     /gene="asnB"
                     /locus_tag="U0342_000306"
                     /EC_number="6.3.5.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparagine synthase (glutamine-hydrolyzing)"
                     /protein_id="HEM2421687.1"
                     /translation="MCGFVGCVHDRITEITGADKETFRQMNSMITHRGPDDEGYFTDD
                     HVQFGFRRLSIIDVENGHQPLTYENERYWIIFNGEVYNYVELREQLVAEGMTFETESD
                     TEVIIATYAKYKEKTAERLRGMFGFVIWDKQEELVYGARDPFGIKPFFYAEEDGKLFM
                     GSEKKSILHALKEKELDEVSLQNYMTYQFVPEPDSLTKNVKRLEPGHQFTKKIGQPME
                     ITTYWKASFAPVTKSEDAWIKEVRDVMYDSVKMHMRSDVPVGSFLSGGIDSSIIAAIA
                     KEYHPAIKTFSVGFERDGFSEIDVAKETADKLGVENISYVISPEEYMKELPKIVWHMD
                     DPLADPAAIPLYFLSREARKQVTVALSGEGADELFGGYNIYNEPNSLAMFNKMPSVFK
                     SMLNSVARIMPEGMRGKSFLERGTTPMEERYIGNAKMFTEKEKQILLPKYQAGHDYTN
                     ITDPFYAETTNYHPVERMQYIDIHTWLRGDILLKADRMTMANSLEVRVPFLDKEVYNV
                     ARNIPDTMKTTNGTTKYILRKAAATFVPEHVLNRRKLGFPVPIRHWLKDEMNAWVKNI
                     IKESPTDHLINKQYVLGLLDDHCAGKFDYSRKIWTVVIFMIWYDVYVADKYDFGK"
     gene            complement(7358..8557)
                     /locus_tag="U0342_000307"
     CDS             complement(7358..8557)
                     /locus_tag="U0342_000307"
                     /EC_number="2.5.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine adenosyltransferase"
                     /protein_id="HEM2421688.1"
                     /translation="MAKNRHLFTSESVSDGHPDKIADQISDAILDAIISKDPDARVAC
                     ETTVTTGLVLVAGEITTSVYVDIPKIVRDTIKEIGYTRAKYGFDAETCAVLTAIDEQS
                     PDIAQGVDEALESRSGKEIDAAIEAIGAGDQGLMFGFATDETEELMPLPIFLAHGLAR
                     KLTELRKTNKLDYLRPDAKTQVTVEYDEFNQPVRIDTIVVSTQHHPDITQEQIAKDLH
                     TYLFPEVIDASFLDEDTKYFINPTGRFVIGGPLGDAGLTGRKIIVDTYGGYARHGGGA
                     FSGKDPTKVDRSGAYAARYVAKNIVAAGLAKKVEVQVAYAIGVARPVSISIDTYGTSD
                     YSEQELIDGVNELFDLRPAGIIHMLDLRRPIYRQTAAFGHFGRSDLDLPWERTDKAEA
                     LKKLIVK"
     regulatory      complement(8664..8772)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            8979..9281
                     /locus_tag="U0342_000308"
     CDS             8979..9281
                     /locus_tag="U0342_000308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421689.1"
                     /translation="MSLIPLSLIIFLGFLAVLCLFDFVFRLYWFKYFLATMGLIASGV
                     VFFISFYGGGMSQTEIAIAIFIGSFGEYVVSLIISLVRFISRKSKKPKQKKKAKTA"
     gene            complement(9314..14452)
                     /gene="lapB"
                     /locus_tag="U0342_000309"
     CDS             complement(9314..14452)
                     /gene="lapB"
                     /locus_tag="U0342_000309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="surface-anchored adhesin LapB"
                     /protein_id="HEM2421690.1"
                     /translation="MKSKFFTGMMIFLLALICLTGMKAEAKSVGDISPDDISPEISDN
                     RFQSAEGKVLPNFEVDMSISDQSNGKLSIDEDFELTSDGDIILIGTVQGQYIQGTPIL
                     NENGQLNKIPNRDQGIIMRVDRTTKKVEWARVVNYEDGNYNSQYAADKWFSSYKSITT
                     NSSKSAFYVGGEVVNYYGDSGGGSTLIVKSIDANGNFQIAHKSYVSYGVPSRSDLTYA
                     YFMDIQMEGNTLIMSASARYAAQGKQFIRYTLEPASLSITKNEFNPLDNTFWAKYQRT
                     DVLKIDNKGLMAYNADVNGANQLKMSIRESENNYKEITLFDSVPEILANSSPYIFMED
                     RGDGNVFVVMSTPTTWYIALVNIASEQVVETKKMAMNSSTTLNSVIYSEGKGLLLGGS
                     THAEESIFGSEPLNKNNGYYLALGNDLNVTDSQILRTNQHNSLTTIINGVGNKVDGFF
                     SYDGLNNDGYIQNVESPNTYDVNPNGAMIFAEFNLQSAPVLDTGNPILAFYQGERRAD
                     FDELEGVKAYSGIDSSDITKSITKNTFDLYTVGVQQQLYQIEYLPGSGNKTTGTRNIQ
                     LLHPLETPKLEKSYADSHGAFKVGEVVPANAIHAFNGLDSANNVTYVVTAVDDEKITV
                     DASIKRTEGTKTAVISKEITLMTSTADETAVIDVTSVALAAGKYTSLTEVRSEGHFHI
                     YAETMDNVSIDPKYVKLTEDPENPVDWNVPGVYYVTASLDPASGYTAKDVKVSVAVVD
                     VGSPKVISVNMKPYNPTTALVVAEDDINGAGVYKINWAIKDANGLIIQQGVEESGATI
                     RVQTPVPIDLSTLNDGNYTLSVSAADRIGHTSEASEKAFTVDRQAPVVTADDKITYEI
                     NTKKTEEQFLNDVNVKTEAGAVIKTNFDTMVRMDSPGDYTVLVEATDAAGNQSDPIYV
                     IVTVEDTVAPIISADEAISYNQGNTRTEAQFLADIHATTDEPATITSDFADQVKFDTP
                     GVYAVTLKANDISGNQAIPRTVNVTVKDVIAPVITADEAIIYEKGITKSATDFLTDVH
                     AATNDGSAITSNFATVVDLNTPGDYDVTLNSTDAGGNKSDPITVTVTVRDTTPPVITA
                     DTTITYEKGTTKTAAAFLTDVNATTNDGSAVTSNFNPNSLKQVGTYQVTLSAIDENGN
                     YALPVKVTVIVQDTQKPVISSSATSITYERGEKKQETGFFLDLAIKTDDGTPVTSDFD
                     TAVNLDTAGSYTVTLNAEDESGNKADPVTITVTVADTEKPIITADTTITYAKGTTKTA
                     AQFLTDIHATTNDGSTITSNFDPTVLTQEGTYKVVLNAKDDSNNEADPVTVTITVVDT
                     KGPIINALNTITYERTINKNEADFLADIEATTDDGSTITTDFNSKDLDTVGTYTVTLN
                     AEDASGNKATPVKVTMKVEDNIPPIITADQSITYERGITKTEQAFYTDINAATSDNSA
                     ISSDFSKIDLTKTGNYEVLLQATDQSGNKALPLKINVLVQDTIAPVIKTTSREITNER
                     GVPMTEQQLLARIGANTDDGSKITTDYNPAIVNTSGDYLVHLYAVDAAGNQATPVEIT
                     IHVKDTTAPIITADKKISYPVGTDKTVTEFLQDIHATTDDGSKITTDFDPNMLKTKGT
                     YTIHLNAVDADGNKAKTIDVSLTVEEKVTPPTPPTPDDGGNNTNNGSNGTNDRNANIT
                     VNPTKQNTTATNESIPALGDTTSTIPVIVGMFLLATSLVLIRRK"
     gene            complement(14547..15458)
                     /locus_tag="U0342_000310"
     CDS             complement(14547..15458)
                     /locus_tag="U0342_000310"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM2421691.1"
                     /translation="MKRKVGIIGTGHVGSDVAFSLVTQGICDEIVLIDKIETKAESEA
                     LELRDMASMTNSYTTITSNDWSALGDADVIVMAVGPETLLREDRMEELVETSRSVAEI
                     VPKIIASGFKGIFVNITNPCDVITMLIQKLSGFDYSRVFGTGTSLDTARMRRVVGEAL
                     HINPKSVEGYVLGEHGESQFVAWSTVKIGGVSITDYKTTTPLDLPALKDAVRGGGWNI
                     LMGKGWTSFGIATAAAGIVDAILTDAKQVFPLAVFSEKTNTYIGQPAIIGANGVIDIL
                     EPKLTTDEVANFNASAEVIKTAFQLIE"
     gene            complement(15475..15717)
                     /locus_tag="U0342_000311"
     CDS             complement(15475..15717)
                     /locus_tag="U0342_000311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2584 domain-containing protein"
                     /protein_id="HEM2421692.1"
                     /translation="MGMPLEVNTMIVTKGKEKRISDNFFELEKLGYRIYPIDVPIAVR
                     KTKEGETLGEAIPRKLVWENNKTIIKYELIALNSSN"
     gene            complement(15768..16241)
                     /gene="ytkD"
                     /locus_tag="U0342_000312"
     CDS             complement(15768..16241)
                     /gene="ytkD"
                     /locus_tag="U0342_000312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphatase YtkD"
                     /protein_id="HEM2421693.1"
                     /translation="MFIYNDTLGNKVTIYFEAQENNPDDVLIIPKTEDGWLFTEHKIR
                     GLEFPGGKGEPGETNLDAAKRELMEETGAISDELHFVADYLVESEERTFTKRVYAADV
                     ISIESLDDYLETKGPVIIQGELSRFILQPAFSFFMRDAGMVQIVQQAERILNDKN"
     gene            16315..16581
                     /gene="yidD"
                     /locus_tag="U0342_000313"
     CDS             16315..16581
                     /gene="yidD"
                     /locus_tag="U0342_000313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertion efficiency factor
                     YidD"
                     /protein_id="HEM2421694.1"
                     /translation="MKKILIGGIRLYQKYISRFTPATCRFYPTCSAYGIEAIQTHGAL
                     KGSYLAIRRISKCHPFHKGGLDFVPPKKEKNADSEHSCKAHHHH"
     gene            16731..17684
                     /locus_tag="U0342_000314"
     CDS             16731..17684
                     /locus_tag="U0342_000314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM2421695.1"
                     /translation="MRKKYLIALTVLFSALLILTGCSDESDKKATKSDQLTVYTTVYP
                     LQYLTEQIGGEYVDVHSIYPPGSDAHSFEPTQKDMMKIADSDLFFYIGLGMEGFVDKA
                     EKTLANEHVSFVPTAEKLDLPKDPDAAEEHDHESEEEHEHGDINPHVWLNPVYMEQMA
                     TVVKDKLIKEMPDQKETFEKNYQAVEKKLKKLDQDFRTVTKEAKQKDFVTAHAAYSYW
                     ETEYGLHQIPIAGVSTSDEPSQKKLKSIVEKIEAEKIPYIMLEQNTNSKIADVIQQET
                     NTKTLTLHNLETLTQKDLDQKRDYLSIMNDNLKALKEGLNY"
     gene            complement(17702..19111)
                     /locus_tag="U0342_000315"
     CDS             complement(17702..19111)
                     /locus_tag="U0342_000315"
                     /EC_number="6.2.1.26"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681327.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate--CoA ligase"
                     /protein_id="HEM2421696.1"
                     /translation="MDMTNWLQKRVRLSPKETALVFEGKEETFEEISEAVKQLAGKLF
                     ALGIRKDEMVALLGKNDRMTFLLIHALQQLGAVTLFLNNRLTKKEISFQLANAEVKHV
                     IVADSLVDKVATGISYATLAETDYEAPALLETWDLSRAASVMYTSGTTGKPKGVVQTY
                     ENHWWSAVASVLNLGLTEKDSWLCAVPIFHISGLSIMMRSVIYGIPVYLEEHFDEEKI
                     TQLLESGKISTISVVTSMLERLLKIHSGSYHPNVRTVLLGGGPASKAVLEICKQRDIP
                     LVQSFGMTETASQIVTLPPKDALNKIGSSGKALFPAEVKIADDGEILLKGPSITPGYL
                     HNKKATEASFVDGWFKTGDIGYLDEEGFLFVLERRSDLIISGGENIYPTEIEHVISEY
                     EGVKEVAVIGKPDDKWGSVPVAFIVAEETFDEAELRLICETNLAGYKIPKQITIVEKL
                     PKTASGKIQRNKLKERHSM"
     gene            complement(19127..19945)
                     /gene="menB"
                     /locus_tag="U0342_000316"
     CDS             complement(19127..19945)
                     /gene="menB"
                     /locus_tag="U0342_000316"
                     /EC_number="4.1.3.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoyl-CoA synthase"
                     /protein_id="HEM2421697.1"
                     /translation="MSFNWQTEKVYEEIKYESYEGIAKITINRPEVHNAFTPKTVTEM
                     IDAFNLARDNSNLGVIILTGEGEKAFCSGGDQKVRGHGGYVGDDQIPRLNVLDLQRLI
                     RVIPKPVIAMVAGWSIGGGNVLQLVCDLTIAADNAKFGQTGPNVGSFDAGYGSGYLAR
                     VIGHKKAKEVWFMCRQYTADEALEMGWINTVVPVADLEKETVAWAKEMLQKSPTALRF
                     IKAAFNADTDGLAGIQQLAGDATLLYYTTDEAKEGRDAFKEKRDPDFDQFPKFP"
     gene            complement(19942..20769)
                     /gene="menH"
                     /locus_tag="U0342_000317"
     CDS             complement(19942..20769)
                     /gene="menH"
                     /locus_tag="U0342_000317"
                     /EC_number="4.2.99.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-6-hydroxy-2,
                     4-cyclohexadiene-1-carboxylate synthase"
                     /protein_id="HEM2421698.1"
                     /translation="MLVNGRHYHLTTAISGEKPALLMLHGFTGTSETFQDSISGLKEH
                     FNIIAPDLLGHGNTASPEEISPYTMENICEDLAGILHQLNISRCFVLGYSMGGRVATA
                     FAATFPKRVRGLILVSSSPGLEQADIRESRVAADNRLADWIEEEGLVPFVDYWENLAL
                     FASQKVLSPEMKRRIRSERLSQNSHGLAMSLRGMGTGKQPSYWNCLANFTFPVLLITG
                     ALDEKFEKIAQEMHQLLPNSTHVSIQEAGHAVYLEQPNSFSSQLNYWLEDILKEEEK"
     gene            complement(20771..22513)
                     /gene="menD"
                     /locus_tag="U0342_000318"
     CDS             complement(20771..22513)
                     /gene="menD"
                     /locus_tag="U0342_000318"
                     /EC_number="2.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-succinyl-5-enolpyruvyl-6-hydroxy-3-
                     cyclohexene-1-carboxylic-acid synthase"
                     /protein_id="HEM2421699.1"
                     /translation="MTNHEQVLTDYLAAFIEELVQAGVKEAIISPGSRSTPLALMMAE
                     HPILKIYVDVDERSAGFFALGLAKASKRPVVLLCTSGTAAANYFPAVAEANLSQIPLI
                     VLTADRPHELRNVGAPQAMDQLHLYGSHVKDFTDMALPENSEEMLRYAKWHGSRAVDI
                     AMKTPRGPVHLNFPLREPLVPILEPSPFTATGKKHHHVHIYYTHEVLDDSSIQKMVTE
                     CTGKKGVFVVGPIDKKELEQPMVDLAKKLGWPILADPLSGLRSYGALDEVVIDQYDAF
                     LKEAEIMDKLTPEVVIRFGSMPVSKPLKNWLEQLSDIRFYVVDPGAAWKDPIKAVTDM
                     IHCDERFLLDIMQQNMPDDAKDAAWLNGWTSYNKVAREIVLAEMANTTILEEGKIVAE
                     LRRLLPDKAGLFIGNSMPIRDVDTYFSQIDKKIKMLANRGANGIDGVVSSALGASVVF
                     QPMFLLIGDLSFYHDMNGLLMAKKYKMNLTIVIVNNDGGGIFSFLPQANEPKYFESLF
                     GTSTELDFRFAAAFYDADYHEAKSVDELEEAIDKASYHKGLDIIEVKTNRHENKANHQ
                     ALWVKIADALKALD"
     gene            complement(22510..23898)
                     /locus_tag="U0342_000319"
     CDS             complement(22510..23898)
                     /locus_tag="U0342_000319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isochorismate synthase MenF"
                     /protein_id="HEM2421700.1"
                     /translation="MNTKLPLDLFNQAKRSASQDQPALFSWVTELDELVSPVKLFKKA
                     GTAFKGERFFWQNPEMTLTMTGFGVTKQFLAEKKKDAFLGLQEKIEKRLRTSVTNATV
                     DATGPIYFGGFAFDPERDTEKEWQSFKDGLFYLPLFMLTNKDGKSYLTVNLSIYSDDT
                     ESKLEAVFNQWQKIIHQEVNEAEMALLTDFKEIGKDHFLETASEIIDMINHSEDVKKV
                     VLARRMGLRFQRQVDSAIILENMLATQENSYFFLIEKGTGVFFGATPERLLAVNGDEI
                     HSSCVAGSTERGATEEADEALGNALLKDAKNLREHSYVVQMMEETLKPFTTGLSLSSQ
                     PVLLKNRDIQHLYMNITAKKKPDVSMLEMVKALHPTPALGGLPQKMGLAIIRMKEEMD
                     RGFYGAPIGWVDLKGSGEFAVAIRSGLIVDSQGLIYAGCGIVGDSVPKEELQETAVKF
                     QPMLRVLGGIKK"
     gene            24073..25011
                     /locus_tag="U0342_000320"
     CDS             24073..25011
                     /locus_tag="U0342_000320"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465202.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM2421701.1"
                     /translation="MANASKSALTKQTGFQKWWTLLRPHTLVASFVPVFLGTSVAMSY
                     TSFHFTRFIVMLIACFFIQTSANLFNEYFDYKKGQDDEHSVGNGGAIVRNGMRPGFIL
                     FLAIFLYILSILGGVYLSIELNWYVGLLGAICMLVGFLYTGGPYPIAYTPFGEIMAGF
                     FMGGIITFISFYIQAEFISSFIVYVSIPVMVLVGNLLLANSIRDLVPDKKNGRLTLAI
                     LLGRKWATVLFAAAFLFSYVFEIALIFTQDAPWWTLLILLSLPEAIRAVRRFIGKTSP
                     ITMVPAMKSTSKALTIFGITLALAYLLSLLSRNLFM"
     gene            complement(25045..26898)
                     /locus_tag="U0342_000321"
     CDS             complement(25045..26898)
                     /locus_tag="U0342_000321"
                     /EC_number="1.5.1.20"
                     /EC_number="2.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465203.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional homocysteine
                     S-methyltransferase/methylenetetrahydrofolate reductase"
                     /protein_id="HEM2421702.1"
                     /translation="MNLRKDLSEKVLIADGAMGTLLYSYGVDRSFEELNLSHPEDIVA
                     IHKAYIGAGADIIQTNTYGANYIKLARYGLEDEVKRINQAAIRLAKEAARGTGTYIFG
                     TIGGINGAVDARLPAAPLEEIKRSFREQLYCFLLDGVDAILLETYYDLDELKTVLKIL
                     RETTDLPVVANVSMHEPGILQNGKKLPDALEELIALGADVVGINCRLGPYHMARALET
                     VPLYDNAYLAVYPNASLPEMQEGKVIYQSDTDYFEHYGEVFRQEGARIIGGCCGTTPD
                     HIRALRKGLETTKPILEKEVRPILELVPEEVEDVDSGERLLDKVKERLTILVELDPPR
                     TFDTTKFFEGAQALDEAGVDAITISDNSLATPRISNMALASILKHEYGIKPLIHLTTR
                     DHNLVGMHSHVMGFHKLGLHDVLAITGDPTKVGDFPGASSVFDLRSVELVQLIKKFND
                     GISYTGKSLKEKARFHVGAAFNPNVLNLEKAVRLIERKVEYGADYIITQPIYDVNKAI
                     LLKEALQKANIDVPLFIGVMPLLSSRNAEFLHNEVPGIRLTDDVRERMREAEEHGHAN
                     EEGMAIARELVDAICEHFQGIYIITPFLRYDLSIELAKYAQNKQQVQIGSK"
     gene            complement(26895..28067)
                     /gene="metC"
                     /locus_tag="U0342_000322"
     CDS             complement(26895..28067)
                     /gene="metC"
                     /locus_tag="U0342_000322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465204.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cystathionine beta-lyase"
                     /protein_id="HEM2421703.1"
                     /translation="MANEYAQDTAVIKASLGIDKETGALNTPIHLSSTFHQHDFDNYH
                     AYDYARSGNPTREKVEQAIAELEGGTNGFAFASGMAAVSAALFTLSKGDHFIIAKDVY
                     GGTFRFVEQVLPRFGITHTFVDTTNIDEVAKAFQANTKLVYLETPSNPLLHVTDIRTV
                     AKLAKANGCYTFVDNTFLTPLIQKPLELGADLVIHSATKFLGGHSDILAGLIVTNNPN
                     LAEAVYFLQNSTGGVLGVQDSWLLLRGLKTLSVRMKAGTETAEKIALFLNAEPDVVAV
                     HYPGLPSHAGYDIQVEQATSGGAVLSFDLGSEEAVRELVTHLELPVFSVSLGAVESIL
                     SYPAKMSHAAVPEEERLAQGITPGLLRFSAGLEDADDLIADLKQALSFIKKGSVAK"
     gene            complement(28060..29184)
                     /locus_tag="U0342_000323"
     CDS             complement(28060..29184)
                     /locus_tag="U0342_000323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465205.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2421704.1"
                     /translation="MAKLKQETIAAQIGNRKCERTGAVNMPVYFSTAYQHADLGVSTG
                     YDYTRTGNPTRDALQEALAELENGTHAFATSSGMSAIQLVFQLFKTGEHIISSQDLYG
                     GTFRYFEQFGAQYNIGFSYWDGAEIADLEKLVRPETKAIFIETPTNPLMQETDIAAVS
                     EWAGAHDLLVIVDNTFYTPILQQPLTLGADIVIHSATKYLGGHNDVLAGAVIVKEERL
                     GNFFFNQLNATGAVLSPFDSWLLIRGLKTLVLRVRQHQANAEKIAAFLESHELVEEVR
                     YPGRGGMISFFIQDAALVSPLLKELELFTFAESLGGVESLITYPTTQTHADIPEELRN
                     SYGLTDKLLRISVGIEASEDLIADLSKALDAVLEGVSARG"
     gene            complement(29206..31503)
                     /gene="metE"
                     /locus_tag="U0342_000324"
     CDS             complement(29206..31503)
                     /gene="metE"
                     /locus_tag="U0342_000324"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM2421705.1"
                     /translation="MVKAISSNLGYPRLGEKREWKRALEKFWNGTISEKELLAETKIL
                     RLHALKKQQDKGIDLIPVGDFSFYDQVLDTSVTFGIIPKRFQHDGGKVSLNTYFDIAR
                     GKNDAVASEMTKWFNTNYHYIVPELADAEPKVLDNRALYYYEEAKKELGIEGKPVLVG
                     PITYLKLGKGSDAKSFEVLLDKFIPAYVEILKELEAAGAKWVQIDEPYLATSFDKKEI
                     ALFEKVYQAFQTAVPNLKIELQTYFESLDYYEEVVNLPVAAIGIDFVHDHGDSIKALK
                     AHGFPEDKYLAAGVVDGRNVWRSDLDAKLELLTEIANYVADGKLIVQPSNSLLHVPVT
                     KLSEPDLDEVILGGLSFADQKLEEITILTKALTNGAESVAAELEESRAAVTALNESSH
                     RNNLEVQEAIANLKNVRVDRELPFAERIKLQHAWLKLPLFPTTTIGSFPQSPEVRKTR
                     ADWLKGNITDAEYNAFIEKETARWIKIQEDLDIDVLVHGEFERTDMVEYFGQKLAGFQ
                     ATKFGWVQSYGSRAVRPPLIYGDVAFTEEITVKESVYAQSLTKRPVKGMLTAPVTIIN
                     WSFVRDDVPESVVANQVGLALRKEVEALERNGIKVIQVDEPALREGLPLKQARWQKYL
                     DDAVYSFKLTTASVQNDTQIHTHMCYSDFDDIIDTISALDADVISIETSRSHGEIIST
                     FEEVTYDKEIGLGVYDIHSPRVPTVTEIQDNIRRALRAIDAKQFWINPDCGLKTRKEP
                     ETIAALQDMIKATKEVRAEYQVLEK"
     regulatory      complement(31610..31716)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            complement(31793..32968)
                     /locus_tag="U0342_000325"
     CDS             complement(31793..32968)
                     /locus_tag="U0342_000325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465207.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2421706.1"
                     /translation="MGAKGKFWILTMVVAISGLSQGVLLPLIAIILEEKGISAGINGF
                     HATGIYLGVLLISPFIEAPLHKYGYKPIILVGGGLVAVSILAFPIWFNLYFWFILRLL
                     IGVGDHMLHFSSQTWIGAMSDPSKRGRNMAIYGLFFSLGFAIGPQLVNLAKINANLPF
                     FLSGILVLIAWGLVWFVRNDFVAEKAVIRKISFWGSLKRFSDVFKLAWVAMIPPFLYG
                     ILETGLNATFPVVGLRDGLDTMMIAMVISSFSVGTIIFQVPIGIVSDKFGRGKVLPLL
                     TGAGAVVFMLTAFVKIPVLYVVFFFVLGILLGSLYSLGLSYMTDLTPLELLPAGNILV
                     GMCFSLGSIIGPSATGMMIGIFGNQIFYFVVAGILVLGCLLLVFGARKDALEKKMGN"
     gene            complement(33033..33104)
                     /locus_tag="U0342_000326"
     tRNA            complement(33033..33104)
                     /locus_tag="U0342_000326"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33069..33071),aa:Glu,seq:ttc)
     gene            complement(33110..33200)
                     /locus_tag="U0342_000327"
     tRNA            complement(33110..33200)
                     /locus_tag="U0342_000327"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33164..33166),aa:Ser,seq:gct)
     gene            complement(33235..33307)
                     /locus_tag="U0342_000328"
     tRNA            complement(33235..33307)
                     /locus_tag="U0342_000328"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33272..33274),aa:Asn,seq:gtt)
     gene            complement(33314..33387)
                     /locus_tag="U0342_000329"
     tRNA            complement(33314..33387)
                     /locus_tag="U0342_000329"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33351..33353),aa:Ile,seq:gat)
     gene            complement(33413..33483)
                     /locus_tag="U0342_000330"
     tRNA            complement(33413..33483)
                     /locus_tag="U0342_000330"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33449..33451),aa:Gly,seq:tcc)
     gene            complement(33508..33580)
                     /locus_tag="U0342_000331"
     tRNA            complement(33508..33580)
                     /locus_tag="U0342_000331"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33545..33547),aa:His,seq:gtg)
     gene            complement(33609..33681)
                     /locus_tag="U0342_000332"
     tRNA            complement(33609..33681)
                     /locus_tag="U0342_000332"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33646..33648),aa:Phe,seq:gaa)
     gene            complement(33686..33761)
                     /locus_tag="U0342_000333"
     tRNA            complement(33686..33761)
                     /locus_tag="U0342_000333"
                     /product="tRNA-Asp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33726..33728),aa:Asp,seq:gtc)
     gene            complement(33766..33839)
                     /locus_tag="U0342_000334"
     tRNA            complement(33766..33839)
                     /locus_tag="U0342_000334"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33803..33805),aa:Met,seq:cat)
     gene            complement(33882..33971)
                     /locus_tag="U0342_000335"
     tRNA            complement(33882..33971)
                     /locus_tag="U0342_000335"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(33933..33935),aa:Ser,seq:tga)
     gene            complement(33994..34067)
                     /locus_tag="U0342_000336"
     tRNA            complement(33994..34067)
                     /locus_tag="U0342_000336"
                     /product="tRNA-Ile"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(34031..34033),aa:Ile,seq:cat)
     gene            complement(34079..34152)
                     /locus_tag="U0342_000337"
     tRNA            complement(34079..34152)
                     /locus_tag="U0342_000337"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(34116..34118),aa:Met,seq:cat)
     gene            complement(34195..34267)
                     /locus_tag="U0342_000338"
     tRNA            complement(34195..34267)
                     /locus_tag="U0342_000338"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(34232..34234),aa:Ala,seq:tgc)
     gene            complement(34290..34363)
                     /locus_tag="U0342_000339"
     tRNA            complement(34290..34363)
                     /locus_tag="U0342_000339"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(34327..34329),aa:Pro,seq:tgg)
     gene            complement(34374..34447)
                     /locus_tag="U0342_000340"
     tRNA            complement(34374..34447)
                     /locus_tag="U0342_000340"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(34411..34413),aa:Arg,seq:acg)
     gene            complement(34457..34542)
                     /locus_tag="U0342_000341"
     tRNA            complement(34457..34542)
                     /locus_tag="U0342_000341"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(34506..34508),aa:Leu,seq:taa)
     gene            complement(34557..34631)
                     /locus_tag="U0342_000342"
     tRNA            complement(34557..34631)
                     /locus_tag="U0342_000342"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(34597..34599),aa:Gly,seq:gcc)
BASE COUNT         9892 a         7809 c         6079 g        10859 t
ORIGIN      
        1 ggcagtagct ttaattatta agctactacc tatcttctat tattctctaa aacgattcgt
       61 ggcctctcga gaatgtttaa tttgttgaat catttcgtcg tagtgatggg atgcataata
      121 gtaaaataaa atgtcaatta ctagcaattg cgcttgtctt gaacttgttg cggtacttct
      181 aatttcagct tctggagcac gagaagtttc taaagataaa tctgcttttt ccttcagctt
      241 attgctacca aaacgtgtaa gactaataac aatgacgttg ttcagtttgg cttgatctac
      301 gagttgcaag acttctgatg tttctccact gttagaaata gcaataaaaa cggctttctt
      361 cttccccgtt gcaaaagcca ttgctagaac atgtgcatct tgcgtagcta aaacatgttt
      421 ccctgcacgc agccactttt gcgaaatatc ttctgctact aaccaagaag ccccgacccc
      481 gtatgtataa atagtatctg cttcgccgag taattcgcat gcctctaaaa ctttggcttc
      541 atctagttgg ctagccgtat cgttcatcgt ttgaatcatg ttagaaacta gtttttctgt
      601 gatggtatga aaatcttcat ttggttcaat atcataatag cctttctttt gcggttgagc
      661 caaatctaat gataattgtc tttttagttc tggaaaactt tgaagtccga ttgatttaca
      721 gaaacggata acggccgcac cgcttgcatc tgcttgttga gctagtttat gaatcgatgc
      781 agtagttgta aattctggat ttgctaatac tgcttggcca atttttttct ctgacttcgg
      841 caaatcattt aaaatacctt ctattcgatt gataatacta ccattactca ttaacttttc
      901 tccattccat tttccgtaat tataccaaaa aattagtcaa aaataaaact gccagccaga
      961 agccagcagt ttccattatt agttcgcaac aatatttaca agtttccctg gaacgacaat
     1021 cactttacgg attgttttgc cttctaggtt ttctttcatt ttgttgtctt cttgtgcaat
     1081 tttttctagt tcttcttttt cgagagattt ggcaacggtg attttgcttt ttactttgcc
     1141 gtttacttga agtacgattt ctacttcatc ttctactagt tttgtttcgt cgtatgttgg
     1201 ccaagctacg tagctgattg tttcggtgtg acctaggatt tcccataatt cttctgcaag
     1261 gtgtggtgcg attggtgaca agagttgaac gaaaccttcg acatattgtt ttggaatcgt
     1321 atcttgttta tatgcttcat tgatgaaaat catcagttgc gaaatcccgg tattgaaacg
     1381 caggttttcg taatggttgg taactgtttt caccatatga tgatatgctt tttctaagtt
     1441 agcattcgca tcagttgtca ctttttcagc gagtgtgcct tcttcagtta ctagcaagcg
     1501 ccagatgcgg tctaggaatt tacgtgcacc ttccagtcca ttttcgttcc atgcaatcga
     1561 agcttctagt ggtcccatga acatttcgta caagcgaagt gtgtctgcgc cgtatttttc
     1621 tactacttca tcagggttaa caacattacc tcttgatttg gacatttttt cgttattttc
     1681 gccaagaatc ataccttggt taaatagttt ttggaaaggt tcttttgttg gaactacacc
     1741 gatatcgtac aagaatttat gccagaaacg tgcataaaga aggtgaagca ctgcatgctc
     1801 tgccccgccg atataaacgt caactggaag ccattctgct agtttttctt tgtcagcaat
     1861 tgcttcgctg ttatttggat cgatataacg caagaaatac cagcttgagc cagcccattg
     1921 tggcattgta tttgtttcgc gacgaccttt tcgaccgttt ttgtctgtta cgtttaccca
     1981 gtcatgcaag ttagcaagtg gtgattcgcc tgttcctgat ggtttgattt ctgttgcttt
     2041 tggcagaagt agtggtagtt cgtcttctgg tacaagcgtt gtttccccgt cttcccagtg
     2101 aataactgga attggttcac cccagtaacg ttgtctgctg aacaaccagt cgcgcaaacg
     2161 atacgtgatt ttacggctac cgatgccttc tttttctagc caatcaattg cagcggtaat
     2221 cgcttcggct ttagctagtc cgttcaagaa atcggagtta atatgtggtc cgtcgccagt
     2281 gaatgcttct tttgtcacgt cgccgccttc aagaacagga cgaatattca aaccaaattg
     2341 ttgcgcaaat tcaaagtcac gttcatcgtg agctggtacg gccataatcg cacctgttcc
     2401 atattgaatc aacacgtagt ccgcaatcca aattggcact tcttcgccgt tgattggatt
     2461 aatcgcataa gctcctgtga agacacctgt tttatctttt gcaaggtcgg ttctttccag
     2521 ttcgctttta agttctactt gttttttata agcttcaact gcttcttttt gttctggtgt
     2581 tgtgattttt tcgataagtt cgtgttctgg tgcaaaaacg gtatatgttg cgccaaaaag
     2641 tgtatctgga cgtgttgtga aaacattaaa cgtttcatcg ctatctttaa ttttaaaagt
     2701 aacttctgcg ccttctgaac gaccaatcca gttacgttgc atatctttaa tattttcagg
     2761 ccaatccact agatcaagat catctagcaa acgatctgcg tacgcggtga ttttaagcat
     2821 ccattgacgc attggtttgc ggaaaactgg gaagccaccg cgttcacttt tgccatcgat
     2881 aacttcttca ttggctaaaa ctgtaccaag tgccggacac cagtttacag cgatttcggc
     2941 ttcataagct aaaccttttt catatagttt ttcaaaaatc cactgtgtcc atttataata
     3001 ttcaggatct gttgtattga tttcacggtc ccagtcgtag gaaaaaccaa gtgatttaat
     3061 ttggcgagta aagttggcaa tattcagtgc ggtaaattct tctgggtcgt taccagtatc
     3121 aattgcatat tgctctgcag gaagaccaaa agcatcccaa ccgattggat gaaggacgtt
     3181 cttcccttgc attcgtttca tacgagacaa aatatctgtt gctgtataac cttctggatg
     3241 tcctacgtga agacctgctc cagatgggta agggaacata tctagtgcat agaagttatc
     3301 tttattttta tcttctgttg ttttgaaagt gttatgttca ctccaatatt gttgccattt
     3361 tggttccatt tttttgtgat taaatgtcac tttactcatc ctcttttcct taaaatatcg
     3421 aattttggct acaaaaaaat ccctacatcc caacggctta tcgccatggg acgagagatg
     3481 cttctcccgc ggtaccaccc acattagtgt ttgaccactc aacttatcaa ttccttaacg
     3541 cggaaaacgg ggatacaccc aagctccatg gtaagttcat ccggattttg tgactgactt
     3601 gcaccaaccg tcagctctct tcacatcaaa atatgcagat tactactcca attcatcgct
     3661 ttttcgcaaa attcattagt cttattgtag ctgaatttca tttttttagc aagcgctctg
     3721 aagatttatc taactttcct aacaaaatgt gctaaaatga atggagaatt tcatttgaag
     3781 gagtctaaaa ctagtgaaac aaacgaatcc atttgtatat agcaatgata ataaaagata
     3841 tcatacatgg aactactgct taagagaaga atttgggcaa aagacataca aagtggcgct
     3901 tgatggcggc tttgattgtc ccaatcgtga cggtacggta gcgcatggtg gttgtacatt
     3961 ttgtagcgcg gctggttctg gggactttgc tggcaaccga gcgcttgatt taaaagtaca
     4021 attccagcaa gtgcgcgaca agatgcaaac gaaatggaaa gacgggaaat gtatcgctta
     4081 tttccaagct ttcacgaata cacatgcacc ggttgccgag ttacgtgaga aatttgaaac
     4141 tgttttgaat gagccgggtg tagttgggct ttcgattgcg acaagaccgg actgtttgcc
     4201 agatgatgtg gtggaatatt tagctgagtt gaatgaacgt acttatttat ggttggagct
     4261 tggattgcag tctgctcatg atgagactgg ccgcttaatc aaccgggcgc atgattatga
     4321 ttgttatcta gaaggagtgc acaaactgca aaagcacaat atccggattt gtacccacat
     4381 tattaacggt cttccaaaag aaacaccaga aatgatgatg gaaacaacgc ggaaagtagt
     4441 cgaaagtggc gtggatggta tcaaaatcca tttgctccat ttattaaaag gaacgccaat
     4501 ggtagaagat tataaaaaag gtgacttaga atttttaact cgggatggct atgtaaactt
     4561 agtcgctgat caactagaga tcttaccgcc tgagatggtt attcaccgga ttactggtga
     4621 tggtggcgta gatgatttaa ttggccctgt ttggagttta aataagtttg aagtgttgaa
     4681 tgcgattgat gcagaacttg ttcgaagaga tagctggcaa gggaaacact atcaacctgt
     4741 ggaagtgatt tctgaatgaa tttaagaggc attctcccct tcgctcatga tacgctacga
     4801 aaagtagttc gtcctggtga ttatgtgatt gacgccactt gtggtaatgg acacgatacg
     4861 cttttattag cggaacttgt tggtattaat gggcatgtac ttggatttga tattcaacaa
     4921 atggctgttg atgcgacgaa ggctcgttta gaaaatgcgg gtgtttcttc gcaagtggaa
     4981 ctcgtttgcg ctagccatgc acgtatccct gcgtacacat ccagacctgt tcgcgccgct
     5041 atttttaatc ttggatattt accaggtggc gacaaagaaa ttacaacaac cgctgattcg
     5101 acgctagaaa gcattggtca tttaatgcag ctgctcgaag ttggtggcgt cattattctc
     5161 gttatatatc acggccaccc tgctggaaaa atcgaaaaag atgctgttgt gactttttgt
     5221 gaagcaatcc cacaacaaga tttccacgtt ttatcttatc aatttattaa tcaaaaaaat
     5281 gatgccccat tcgtcattat catcgaaaaa agaaaaccta gacaggctaa ttaatagctt
     5341 tgtctaggtt ttcttttatt ttccaaaatc gtatttatct gctacgtata catcatacca
     5401 aatcatgaaa ataacaactg tccagatttt acgactgtag tcgaatttac cggcacagtg
     5461 atcgtctagt aatcctagaa cgtattgttt gttaattaaa tgatctgttg gtgattcttt
     5521 aatgatgttt ttaacccaag cgttcatttc gtcttttaac cagtgacgaa ttggtactgg
     5581 gaatcctagt ttacggcggt taagtacgtg ttctggtaca aatgttgctg ccgctttacg
     5641 taagatatat ttggttgttc cattggttgt tttcattgta tctggaatat ttcttgccac
     5701 attgtacact tctttatcaa ggaaaggtac acggacttcc agcgaattag ccatcgtcat
     5761 gcggtcagct ttgagaagaa tatcgccgcg aagccacgta tgaatatcaa tgtactgcat
     5821 tctttctaca ggatgataat tcgttgtttc tgcataaaat ggatctgtaa tgttcgtata
     5881 gtcatgacca gcttgatatt ttggaagtaa aatttgtttt tctttttccg tgaacatttt
     5941 ggcgtttccg atatagcgtt cttccatcgg agtggttcca cgttctaaga aacttttacc
     6001 acgcatacct tctggcataa tgcgcgccac gctatttagc attgatttaa atacgcttgg
     6061 cattttgtta aacatcgcaa gggaattcgg ttcgttataa atgttataac caccgaaaag
     6121 ttcatctgca ccttcaccgg acaatgcaac cgttacttgt ttgcgcgctt ctcttgataa
     6181 gaagtaaagc ggaatagcag ctggatcagc aagtggatca tccatatgcc aaacaatttt
     6241 tggtaattct ttcatatatt cttcaggtga gataacataa ctaatgtttt ctacgccaag
     6301 tttgtctgct gtttcttttg cgacatcgat ttcactgaaa ccatcgcgtt caaaaccaac
     6361 agagaatgtt ttgattgcag gatgatattc tttagcaatc gcagcaataa tcgatgaatc
     6421 aataccacca gataggaatg aaccaactgg tacatcagag cgcatatgca tttttacaga
     6481 atcgtacatt acgtcacgca cttctttaat ccatgcgtct tctgatttag ttactggtgc
     6541 aaaagatgct ttccaataag tagtaatttc cattggttga ccaattttct tcgtgaactg
     6601 atgtcctggt tctaaacgtt ttacattttt agttaaggaa tctggttctg gaacgaattg
     6661 gtaagtcata tagttttgta atgaaacttc atccaattct ttttctttta aagcatgtag
     6721 aatggatttc ttttcagaac ccatgaacaa tttgccatct tcttctgcat agaaaaatgg
     6781 tttaatgcca aatgggtcgc gtgcgccgta aacaagttct tcttgtttat cccaaataac
     6841 gaaaccaaac atcccacgaa gacgttctgc tgttttttct ttgtatttcg catatgtagc
     6901 gataattact tcggtatcac tttcggtttc aaatgtcatt ccttcagcaa ctaattgctc
     6961 acggagttcc acatagttat aaacttctcc attaaaaata atccagtaac gttcattttc
     7021 atacgttaac ggttgatgac cgttttctac atcaataata cttaaacggc ggaaaccaaa
     7081 ctgcacgtga tcatctgtga agtatccttc atcatctggc ccacggtgcg taatcatact
     7141 gttcatttgt ctaaaggttt ctttatcagc gccagtaatt tctgtaatgc ggtcatgtac
     7201 gcatcctaca aatccacaca tggtaacatt tctcctctat atagataatc attttatctt
     7261 tttttcacaa cgtctatcat atcataacta gactttcttt gcactgttta ggaaagaaaa
     7321 aaaccgaaca ttccttacaa gaaatgttcg gttaagctta ttttacgatt aattttttta
     7381 aggcttctgc tttatcggtt ctttcccaag gtaaatcaag atcgctacgg ccaaaatgac
     7441 caaatgcagc tgtttgacga taaattgggc gacgcaaatc aagcatatga attatcccag
     7501 ctgggcgtaa atcaaatagc tcattaacgc catcaattaa ttcttgttct gaatagtcac
     7561 ttgttccata tgtgtcaatc gaaatggaaa ctggacgagc aactccgata gcatacgcga
     7621 cttgtacttc tactttttta gcaagtcctg cagcaacgat atttttagct acataccttg
     7681 cagcataagc gcccgatcgg tcaactttgg tcggatcttt accggagaac gctcccccgc
     7741 cgtgacgcgc ataaccaccg tatgtatcca cgataatttt acgcccagtt aagcccgcat
     7801 cgccaagagg accaccaata acaaagcgac cagttggatt aataaagtat ttcgtatctt
     7861 catctaagaa agaggcatca atcacttctg ggaaaaggta cgtgtgcaag tcttttgcga
     7921 tttgctcttg cgtaatgtcc ggatgatgtt gcgtcgaaac aacaattgta tcaatccgaa
     7981 ctggttgatt aaattcatcg tattccaccg ttacttgtgt tttcgcatcg ggacgcaagt
     8041 agtctaattt atttgtttta cgtaattctg ttaacttacg tgctaagcca tgtgctaaaa
     8101 agattggcag tggcattaat tcttctgttt catctgttgc aaaaccgaac attaatcctt
     8161 ggtctcccgc tccgattgct tcaatagccg catcgatttc cttaccactt cttgattcta
     8221 gtgcttcgtc gactccttgc gcaatatctg gggattgttc atcaatcgct gttaaaacgg
     8281 cacacgtttc tgcatcgaaa ccatattttg cacgtgtata gccgatttct ttaattgtat
     8341 cacgcacgat tttaggaata tccacataaa cagaggtggt aatctcacct gctactaata
     8401 ctaaacccgt tgtcacagta gtctcacaag cgacacgtgc gtccggatct tttgaaataa
     8461 ttgcatctaa aattgcatca gatatttgat ctgcaatttt atctggatgt ccatcagaaa
     8521 ccgattctga tgtaaataga tgacggttct tagccaattt attttcctcc ttcaattctc
     8581 tccaaatacg tctcatataa aaagcctctc tctattttgc acaaaacgcg cacgaataga
     8641 gaaaggctat aattatacct ttgctctcat cgttcagaag ataatactcc tgcaacagat
     8701 tagcaccttt cacttatatg tgtaggttgc tgggcttcaa agggtcagtc cctctaccgc
     8761 tctggataag agataaattt taattctaag atagaatacc ataaactggt gccagatgca
     8821 ataataattc ggttttgtgt tatgataaaa cagtcatcta tccgctaaaa ttagctgaaa
     8881 attagcgttc attatttttt cacttatcat tatttgtaac ctgtggtatg atagatggat
     8941 aaaaaagatg ttttacttaa ctaaaggaga ttgtaactat gagtttaatt ccactatcct
     9001 tgattatttt tcttggattt ttagcagttt tatgtttatt tgattttgtt tttcgtttat
     9061 attggtttaa atatttccta gcaactatgg gactaattgc aagtggtgtg gtatttttca
     9121 ttagttttta cggcggcggg atgtcccaaa cagaaatagc tattgccata ttcatcggtt
     9181 cattcggtga atatgttgta tctcttatta ttagcctcgt tcgttttatt tccagaaagt
     9241 caaaaaaacc taaacaaaag aaaaaagcta aaacagccta aaaagctagc gacatgtttg
     9301 tcgctagctt tttttatttg cgtctaataa gaacaagtga agtggctaaa aggaacatac
     9361 ctacgataac tggaatagtt gatgttgtat cacctaatgc tgggatgctt tcatttgtag
     9421 cggtagtatt ttgcttggta ggatttaccg ttatattggc gtttctatca tttgtcccat
     9481 tgctgccgtt attcgtatta tttccaccat catctggtgt cggtggtgtc ggcggcgtca
     9541 ctttctcttc tactgtgagg cttacatcga ttgtcttagc tttattcccg tctgcatcta
     9601 ctgcatttaa gtggatagta tatgttcctt ttgttttcaa catatttgga tcgaaatctg
     9661 tcgtgatttt agaaccatcg tccgttgtag catgaatgtc ttgtaaaaat tccgttaccg
     9721 ttttatctgt tccaacagga taactaattt tcttatctgc cgtaatgatt ggcgcggtag
     9781 tatcctttac atgaatagta atttctacag gtgtggcttg gttccctgcg gcatcaacag
     9841 catacagatg aactagataa tcccctgatg tgttaacaat tgcagggtta taatcggtgg
     9901 ttattttgga accgtcatct gtattggcgc caattcttgc aagtagttgt tgttcggtca
     9961 ttggtacacc acgctcgttt gttatttctc ggctggttgt ttttataacc ggagcgatag
    10021 tatcttgaac tagcacatta attttaagtg gcaatgcttt gtttccactt tgatccgttg
    10081 cttggagtaa gacttcataa tttcctgttt ttgttaaatc gattttcgaa aaatcagagc
    10141 tgattgcgct gttgtcactt gttgcggcat taatatcggt gtagaaagct tgctctgttt
    10201 ttgtaatgcc tctttcgtaa gtgattgatt ggtcagctgt gatgatggga ggaatgttat
    10261 cttctacttt cattgtcact tttacgggcg ttgctttatt gccacttgca tcctctgcat
    10321 ttaatgtgac tgtgtaggta ccaaccgtat caagatcttt actattaaaa tccgttgtta
    10381 ttgtagagcc atcatctgta gttgcttcaa tatctgctaa aaaatccgct tcgtttttat
    10441 tgatagttct ttcataggtg attgtattta atgcattgat aatcggtcct tttgtatcta
    10501 ccacggtgat agtaacagtt actggatctg cttcgttgtt gctatcatct tttgcattta
    10561 atacgacttt gtaagttcct tcttgcgtaa ggacagttgg gtcaaaattg ctcgtgatgg
    10621 ttgatccatc attcgtcgtt gcgtggatat ctgttaaaaa ttgagcagca gttttggttg
    10681 ttccttttgc gtaggttatc gttgtatctg ctgtgataat tggtttttct gtatcagcga
    10741 cagtgacggt aatagtgact ggatctgctt tattgccact ttcgtcttct gcgtttagcg
    10801 tcacagtata acttcccgct gtatccagat ttaccgctgt atcaaaatca cttgtaactg
    10861 gtgtgccgtc atccgtttta atagctaaat ctaggaagaa tcctgtttct tgtttctttt
    10921 cgccgcgttc atacgtaatg cttgtggcac tagatgatat tacaggtttt tgcgtatctt
    10981 gcacaataac agttaccttg actggcaaag catagttccc attttcatca atagcgctta
    11041 acgtcacttg ataagtccct acttgcttca aactatttgg gttgaagtta gaagttactg
    11101 ctgagccgtc attcgttgtt gcatttacat ccgttaaaaa ggcagctgca gttttcgtgg
    11161 ttcctttttc gtaagtgata gttgtatctg ctgtaataac tggtggtgtt gtatcacgta
    11221 cggtaactgt tacggtgatt gggtcagatt tattgccacc tgcatctgtc gagttaagtg
    11281 tgacatcgta atcccccggt gtatttaaat ctactaccgt tgcaaaatta gaggtgattg
    11341 ccgagccatc gtttgtagca gcatgcacat ctgttaagaa atcagtagca gatttggtta
    11401 tgcctttttc gtaaataatc gcttcatctg ctgtaattac tggagcaatg acatctttaa
    11461 ctgtgacatt tactgttctt ggtattgctt ggtttccgct aatatcgttt gcctttaatg
    11521 tgactgcgta gactcctggt gtatcaaatt tcacttgatc cgcaaaatca cttgtaatcg
    11581 ttgctggttc atctgttgtt gcatgaatat cagccagaaa ttgtgcttct gttcgtgtat
    11641 ttccctggtt ataactaatc gcttcgtctg cacttataat cggtgctacc gtatcttcta
    11701 ctgttacaat gacataaatg ggatcagatt ggttgcccgc tgcatcggta gcttccacta
    11761 aaaccgtata atcgcctggc gaatccattc tcaccatcgt atcaaaattg gttttaatca
    11821 ccgctccggc ttccgttttt acatttacat cgtttaaaaa ttgctcttct gttttcttgg
    11881 tgtttatttc atacgtgatc ttgtcgtcag ctgtcacaac tggcgcttgt ctgtctactg
    11941 tgaacgcttt ttctgaagct tctgatgtat gaccaattct gtcagccgct gatactgaca
    12001 aggtataatt gccatcattc aatgtagaga gatcaattgg aactggcgtt tgaactcgaa
    12061 tggtagcacc actctcttcc acaccttgtt ggataataag tccattcgcg tctttaattg
    12121 cccagttgat tttatacacg cctgcgccat taatatcatc ttccgcaacg acaagagcgg
    12181 ttgttggatt gtacggtttc atgtttacag aaataacttt cggacttcca acatcaacta
    12241 cagcgacact tactttcaca tctttcgctg tatatccact cgccgggtca agtgatgcag
    12301 tcacataata aacacctggc acattccaat caactgggtt ttcagggtct tctgttagtt
    12361 taacgtattt aggatcgatg gacacgttat ccatggtttc tgcataaata tgaaaatgcc
    12421 cttcacttcg aacctctgtt aaggatgtat acttcccagc tgctagagcc acactcgtca
    12481 catcgattac tgcagtttca tcagctgtcg aagtcataag tgtaatttcc ttactaatta
    12541 cagctgtttt cgttccttct gttcgcttaa ttgaagcatc tacagttatt ttctcatcat
    12601 ctactgcggt aactacataa gtcacattgt tagcactatc taaaccatta aatgcatgaa
    12661 tagcatttgc aggaactact tcaccaactt taaaagctcc atggctatct gcgtagcttt
    12721 tctctagttt tggggtctca agtgggtgaa gcaattggat atttcgtgta ccagtggttt
    12781 tatttccact acctggcaaa tattcaattt gataaagttg ctgttgtacg cctacagtat
    12841 ataaatcaaa cgtattttta gtgatagatt ttgttatatc tgatgaatca attccagagt
    12901 atgctttcac cccttccagt tcatcaaaat ctgcacgacg ttccccttga taaaatgcta
    12961 aaattggatt acctgtatca agcactggag ctgattgcaa attaaattct gcaaaaatca
    13021 tcgctccatt cgggttcaca tcataggtgt tcggggactc tacattttgg atatatccat
    13081 cattatttaa tccgtcatag ctaaagaaac catctacttt attgccgacg ccattaataa
    13141 tagtggtcaa tgaattatgt tgattcgttc ttaaaatctg gctatccgtt acgttcaaat
    13201 catttccaag cgctaaataa tatccgttat ttttattcaa tggctcactg ccgaaaatgc
    13261 tttcttctgc gtgtgtacta ccacctaaaa gcagaccttt tccttcactg taaatcacac
    13321 tgtttagcgt tgtagaggag ttcatcgcca tttttttcgt ctcaactact tgttctgacg
    13381 cgatattaac aagcgcgata taccatgtgg tgggggttga catgaccaca aacacattcc
    13441 catcgccacg atcttccata aatatataag gagaagaatt tgctaaaatt tcaggaacag
    13501 aatcaaataa agtaatttct ttataattat tttctgattc acgaatagac attttaagtt
    13561 ggttcgcacc atttacatct gcgttataag ccattagacc tttattatcg attttaagaa
    13621 catcggtcct ttgatatttg gcccagaaag tgttatctaa tgggttaaat tcatttttag
    13681 taatcgataa tgaagctggt tctaaagtat accgaataaa ctgtttccct tgagcagcat
    13741 acctagctga agctgacatg attaatgtgt taccttccat ttgaatatcc ataaaatagg
    13801 cataggttag atctgatctt gatggaacac cgtaactaac gtatgattta tgggctattt
    13861 gaaagttacc atttgcatca attgatttta caattaatgt actaccacca ccagaatcac
    13921 cgtaataatt gactacttcc ccgccaacat aaaaggcaga tttactcgag ttggttgtaa
    13981 tcgatttata cgaactaaac catttgtcag ctgcatattg tgaattgtaa ttaccgtcct
    14041 catagttaac aacacgtgcc cactccactt tttttgtggt tcgatcgaca cgcattataa
    14101 tcccttgatc acggtttgga attttattta attgcccatt ttcatttaaa atgggggttc
    14161 cttgtatgta ctgaccttgc actgttccaa tcaaaataat atcaccatct gaggttaatt
    14221 caaaatcctc atcaatcgat aatttcccgt tactttgatc actaattgac atgtctacct
    14281 caaaattagg caaaactttc ccttctgcag attgaaagcg attatccgaa atttccggtg
    14341 aaatatcatc tggagaaata tctcccaccg attttgcttc tgctttcatt ccagtaagac
    14401 aaattaatgc tagcaaaaaa atcatcatac ctgtaaaaaa tttacttttc attcatcccc
    14461 atctcccttt tataaacccc catttgtttt ccccatttca aaagctattg ccattttatt
    14521 cccctatttt ctccatggca aactaattat tcaattaact gaaaagctgt tttaataact
    14581 tcagctgatg cattaaaatt agccacttca tctgtagtta gtttcggttc taaaatatct
    14641 atcacgccat ttgcaccaat gattgctggt tgtccgatgt acgtatttgt tttttcggaa
    14701 aatacagcta atggaaaaac ttgtttagca tctgttaaaa tcgcatcgac aatccccgct
    14761 gcagctgtgg ctattccaaa actcgtccag cctttgccca ttaaaatatt ccaaccacca
    14821 ccacgaactg catcttttaa tgctggtaaa tcaagtggtg ttgttgtttt ataatccgtg
    14881 atgcttaccc cgccaatttt caccgtagac caagcaacga attgtgattc accatgctcg
    14941 ccaagaacgt atccttccac gctctttgga ttaatatgta atgcttctcc aactactcgt
    15001 ctcattcttg ctgtatcaag tgatgttccc gtcccaaata ctcgtgaata atcaaaccca
    15061 gataatttct gaataagcat cgtaatcaca tcacatggat tcgtaatatt cacaaaaatc
    15121 cctttaaacc ccgatgcgat aatttttggt acaatctcag ccactgaccg acttgtttca
    15181 acgagctctt ccatacgatc ctcgcgcagt aacgtttctg gaccaacagc catgacaatg
    15241 acatcggcat cacctagtgc gctccagtca ttcgaagtta ttgtagtata cgaattcgtc
    15301 atcgaagcca tatcgcgcag ttctaacgct tcactttctg ctttagtttc gattttatct
    15361 attaacacaa tttcatcaca aatcccttga gttacgaggg aaaaagccac gtcgctccca
    15421 acatgaccag taccaattat tccaaccttc cgtttcaaaa aatcccctcc acaattaatt
    15481 acttgaattt aatgcgatta attcatattt aatgatagtt ttattatttt cccacacgag
    15541 ttttcgaggg attgcttctc caagtgtttc gccttctttt gttttacgta ctgcgattgg
    15601 cacatcaatt ggataaatcc gataacctaa tttttctagt tcaaagaaat tatcagaaat
    15661 tcgcttttct tttccttttg ttacaatcat tgtgtttacc tctagtggca tacccaattt
    15721 tcccacctcc agtttcttta atcatagcag agattgcccc tatttgacta gtttttatca
    15781 tttaagattc gctcagcttg ttgcacaatt tggaccattc ccgcatctcg cataaaaaag
    15841 ctaaaagccg gttgtaaaat gaatcgactt aactcccctt gaatgatgac agggcctttt
    15901 gtttcaaggt aatcatctag tgattcaatg gaaataacat ccgccgcata aactcgttta
    15961 gtaaacgttc gttcctctga ttcgaccaaa taatcagcta caaaatgaag ttcatcacta
    16021 attgcgcccg tctcttccat gagctcgcgt ttcgctgcgt ctaaatttgt ttctcctggt
    16081 tcaccttttc caccagggaa ttcaagccca cgaattttgt gttcggtaaa aagccaaccg
    16141 tcctctgttt taggtataat gagcacatcg tctggattat tttcctgtgc ttcaaaatag
    16201 attgtaactt tgtttccaag tgtatcatta taaataaaca aaaactcact tccttttctt
    16261 ttttcaaaaa tgtggtaagc tgtatgtaag ctgaaattta gagggtgaaa atcaatgaaa
    16321 aaaattctta tcggaggaat ccgactttat caaaaatata tttcgcgttt cactccggct
    16381 acttgtcgtt tttatccaac ttgttctgcc tatggaatcg aagcgataca gacacatggc
    16441 gctttaaaag gtagttacct tgcgattaga cgtatttcta aatgccaccc gtttcataaa
    16501 ggcggactag attttgtgcc acccaaaaaa gagaagaatg ctgattccga gcattcctgt
    16561 aaagctcacc atcaccatta atcatatcat gaatcggttt ttgccggttc atttttttct
    16621 tgctttttaa gacagaataa ggtattatca aattcggact ataaatcgta attgctacga
    16681 ttcgtatatt atttaaacaa gaattatttc gatttagagg agtgaaaaga ttgagaaaaa
    16741 agtatcttat tgccttaact gtactatttt cagcattact catacttact ggctgctcag
    16801 atgagagcga taaaaaagcg acaaagagtg atcaattaac agtttataca accgtttacc
    16861 ctttgcagta tttaacagaa caaatcggcg gtgagtatgt agatgttcat agcatttacc
    16921 caccaggttc tgacgcccat agcttcgaac ccacccaaaa agatatgatg aaaattgccg
    16981 atagtgattt attcttctat atcggactgg gtatggaagg atttgtggac aaagcggaaa
    17041 aaacactcgc gaatgaacat gtctctttcg tccctaccgc tgaaaaatta gacttgccaa
    17101 aagatccaga tgccgcagaa gaacatgacc acgaaagcga agaagaacac gaacatggcg
    17161 acattaaccc gcacgtatgg ttaaatcctg tatacatgga acaaatggca acagttgtaa
    17221 aagataaatt aatcaaagaa atgcccgatc aaaaagaaac tttcgaaaaa aattaccagg
    17281 ctgtcgaaaa aaaattgaaa aagctagatc aagatttccg cacagttaca aaggaagcaa
    17341 aacaaaaaga cttcgtgaca gcacatgcag cctatagcta ctgggaaaca gaatatggtc
    17401 tgcaccaaat tcctattgcc ggtgtatcaa caagtgatga accttctcaa aagaaattaa
    17461 aatctatcgt tgaaaaaatc gaagcagaga aaatcccata tattatgtta gaacaaaaca
    17521 ctaactcaaa aatagcagat gttattcaac aagaaacaaa tacaaaaaca ctgacactcc
    17581 acaatttaga aacacttacg caaaaagact tagatcaaaa acgtgattat ctttccatta
    17641 tgaacgataa tttaaaagca ttaaaagaag gtcttaatta ttaaaaagaa aggcgctctg
    17701 tttacataga gtgcctttct tttaatttat tgcgttgaat ttttccagat gctgttttag
    17761 gtagcttttc gacaatcgtt atttgtttag ggattttata accagccaaa tttgtttcac
    17821 agataagccg taattcagct tcatcaaatg tttcttctgc aacgataaaa gcgacgggaa
    17881 cactacccca tttatcgtca ggcttaccga taacagccac ttctttcacg ccctcatact
    17941 cggaaatgac atgttctatt tcagtaggat aaatgttctc tcctcccgaa ataatcaaat
    18001 cagaacgacg ctctaacaca aataaaaagc cttcttcatc caaatagcca atatcaccag
    18061 ttttgaacca accatccaca aacgaagctt ctgtcgcttt tttattatgt aaatatccag
    18121 gtgtaatcga tggtcctttt agtaaaattt ctccgtcatc cgcaattttc acttctgctg
    18181 gaaataacgc tttacctgaa gaaccaattt tatttaaggc atcttttggt ggtaaagtaa
    18241 cgatttgtga agctgtttct gtcatcccga atgactgcac taagggaata tcacgctgtt
    18301 tgcaaatttc caaaacagct ttactagcag gcccgccgcc cagtaaaacg gttcgaacat
    18361 tgggatgata acttccgctg tgtattttca acaagcgttc cagcatagaa gtcacgaccg
    18421 aaatcgtaga aattttacca ctttcaagca attgcgtaat tttttcttca tcgaaatgct
    18481 cttccaaata tacgggaatt ccgtaaataa ccgaacgcat cataatcgat aaaccactaa
    18541 tatgaaaaat cggcacagca cagagccagc tatctttctc ggttaaacct aaattcagca
    18601 ccgaagcaac agcactccac cagtgatttt cgtaagtttg cacaacacct tttggtttcc
    18661 ctgttgtccc tgatgtatac ataacagaag ccgcgcgaga taagtcccat gtttctaaca
    18721 acgctggcgc ttcataatcc gtttctgcca aagtagcata actaattcca gtggctacct
    18781 tatctactaa cgaatccgct acaatcacat gttttacctc agcgttcgcg agttgaaacg
    18841 atatctcttt tttcgtcaaa cgattattca gaaataaagt gaccgcacca agttgttgca
    18901 gagcatgaat gagtaaaaaa gtcatccgat catttttccc tagcaaagca accatctcgt
    18961 cttttctaat ccctaacgcg aataacttac ccgcaagttg ttttactgct tcacttattt
    19021 cttcaaatgt ttcttctttt ccttcaaaaa cgagtgcggt ctctttagga gaaagccgca
    19081 ctcgtttttg aagccagttt gtcatgtcca tttttacacc ttcaaatcaa gggaattttg
    19141 gaaattggtc aaagtctgga tcacgttttt ctttaaaggc atcgcgacct tctttggctt
    19201 catcggttgt gtaatataga agtgttgcgt caccagctaa ttgctgaata cccgctaaac
    19261 catctgtatc tgcattgaaa gctgctttga tgaaacgcaa ggcagttgga cttttttgta
    19321 gcatttcttt tgcccaagct actgtttctt tttctaaatc tgctactgga acaacagtgt
    19381 taatccagcc catttctagc gcttcgtccg ctgtatattg acggcacata aaccaaactt
    19441 ctttcgcttt cttatgtcca ataacacgtg ctaaatagcc agaaccataa ccagcatcaa
    19501 agctaccaac attcggtcct gtttgaccaa attttgcatt atctgctgca attgttaagt
    19561 cacataccaa ttgaagaaca ttacctccac caatggacca gcccgcaacc atcgcaataa
    19621 ctggctttgg aataacacga attaaacgtt gtaaatcaag aacattcaaa cgtgggattt
    19681 ggtcatcgcc aacataccca ccatgaccgc gaactttttg gtctccgcca gaacagaaag
    19741 ctttttcgcc ttcccctgtt aaaataatca cgccaagatt cgaattatca cgcgctaagt
    19801 taaatgcatc aatcatctct gttactgttt ttggtgtaaa tgcattatgt acttctggac
    19861 gattaatcgt aattttcgcg attccttcgt aactttcata tttgatttcc tcatatactt
    19921 tttctgtttg ccaattaaaa ctcatttttc ttcctccttc aaaatatctt ccagccagta
    19981 attaagctga cttgaaaagc tgtttggttg ttctaaataa actgcatgcc ccgcttcttg
    20041 aattgaaaca tgcgtactat ttggtaaaag ttgatgcatt tcctgcgcga ttttttcaaa
    20101 cttctcatct aaagcaccgg taatgagtag cactggaaaa gtaaagttcg ctaaacagtt
    20161 ccagtaagat ggttgttttc cggtccccat cccacgtaga ctcattgcta aaccatgcga
    20221 gttttgcgat agccgttctg acctaattct tcttttcatt tcaggagaca aaactttttg
    20281 tgaagcaaac aaagctaaat tttcccagta gtccacaaaa ggcaccaagc cctcttcttc
    20341 aatccagtct gccaaacgat tatcagccgc aacacggctt tctcggatat ctgcttgttc
    20401 aaggccagga gagctactaa ctaaaataag tccacgcacc ctttttggaa aggttgctgc
    20461 aaacgcagtc gcgacccgcc cgcccatcga atagccaagt acaaaacatc tactgatatt
    20521 taattgatgt aaaattccag ctaaatcctc gcaaatattt tccatagtgt aaggcgatat
    20581 ttcttctggg cttgcggtat ttccgtgccc aagtaaatct ggcgcaataa tattaaaatg
    20641 ttctttcaaa cctgaaatac tatcttgaaa tgtttcgctt gttccagtaa aaccatgtaa
    20701 catcagtaaa gctggctttt ctccacttat agcagttgtc agatgataat gtcgaccgtt
    20761 tactagcata ttaatctaat gcctttaacg cgtccgcaat tttaacccaa agtgcttgat
    20821 gatttgcttt attttcatga cgatttgttt tcacttcaat aatatccaaa cctttatggt
    20881 agctagcttt atcgattgct tcttctagtt catctaccga cttagcctcg tgataatctg
    20941 catcataaaa agcagctgca aaacggaaat caagttcagt agatgtacca aataatgatt
    21001 caaaatactt cggctcgttt gcttgaggta agaacgagaa tatcccgccg ccatcattat
    21061 taacaatcac aatcgttagg ttcatcttat attttttcgc cataagtaac ccgttcatat
    21121 catgataaaa ggataaatca ccaattagta aaaacattgg ttggaagaca acactagcac
    21181 ctaacgccga agaaacaact ccgtcaatac cattagcccc gcgatttgct agcattttta
    21241 ttttcttatc aatttgtgaa aagtacgtgt caacatcgcg aatcggcata ctattaccaa
    21301 taaagagtcc cgctttgtcc ggtaacaaac ggcgtaattc cgcaactatc ttaccttctt
    21361 ccaaaatggt tgtgttcgcc atttcagcca aaacgatttc tcgtgccact ttattatacg
    21421 atgtccatcc atttaaccac gctgcatctt tcgcatcatc aggcatattt tgttgcatga
    21481 tatctagtaa aaatcgttca tcacagtgaa tcatgtctgt taccgcttta atcggatctt
    21541 tccaagcagc acccggatcc accacataaa aacgaatatc tgaaagttgt tctaaccagt
    21601 ttttcagtgg tttagaaact ggcatacttc caaaacgaat aactacttct ggtgttaatt
    21661 tatccataat ctctgcttct tttaagaatg catcatattg gtcaatcact acttcatcta
    21721 gcgccccgta agaacggagt ccagaaagcg gatcagctaa aatcggccaa cctagttttt
    21781 tcgctaaatc aaccattggc tgctccaatt ctttcttatc gattggacca acgacgaata
    21841 cgcctttttt accagtgcat tctgtcacca ttttttgaat cgagctatcg tccaatactt
    21901 catgcgtata ataaatatgt acgtgatgat gtttttttcc ggtagctgtg aacggtgaag
    21961 gttctagaat tggcacaagc ggttcgcgta atgggaaatt gaggtgcaca gggccacgtg
    22021 gagttttcat tgcaatatcc accgcgcgac ttccatgcca ttttgcatag cgaagcattt
    22081 cttcactgtt ttcaggaagt gccatatccg taaaatcctt gacatgtgaa ccatataaat
    22141 gcaactgatc catcgcttgt ggtgctccaa catttcgaag ctcatgtgga cgatcagcag
    22201 ttaaaacaat caatgggatt tgtgataaat tagcttcagc aactgctgga aaatagtttg
    22261 cagctgccgt tcctgaagta caaagtaaaa caactggacg tttcgatgcc tttgctagac
    22321 ctaaagcaaa aaagccagcc gagcgttcgt caacatccac ataaatcttc aaaatcggat
    22381 gctctgccat catcagtgca agcggagtgg aacgtgaacc cgggctaata attgcttctt
    22441 tcacaccggc ttgcacaagc tcctcaataa atgcagctaa ataatctgtc agcacttgtt
    22501 cgtggtttgt catttcttta tgcctcctaa tacgcgtaac atcggctgga attttactgc
    22561 cgtttcttgt aattcttctt ttggtacaga atctccaaca atcccgcaac cagcatagat
    22621 taacccctgc gaatcgacaa ttaagcctga acgaatggcc acagcaaact caccagaacc
    22681 ttttaagtca acccagccaa tcggtgctcc gtagaaacca cgatccattt cttctttcat
    22741 ccgaataatg gctaatccca ttttttgagg taaaccgcca agagctggcg ttggatgaag
    22801 agcttttacc atttcaagca tggaaacatc tggttttttc ttcgcggtaa tattcatata
    22861 tagatgttga atatcacgat ttttcagaag tactggttgg ctagataacg acaatcctgt
    22921 tgtaaatggt tttaatgttt cttccatcat ttgcactaca taagaatgct ctcgcaagtt
    22981 tttcgcatct tttaacagcg catttccaag tgcttcgtcc gcttcttcgg tagcgccgcg
    23041 ctccgtagaa ccagctacac atgacgaatg aatttcatcc ccattgaccg caagtaatct
    23101 ttcaggagtt gccccgaaaa agacccctgt tcccttttca ataaggaaga aataactatt
    23161 ttcttgtgtt gctagcatat tttccaaaat aatggcacta tctacttggc gctggaaacg
    23221 caagcccatt cgtctagcta gaaccacttt ttttacatct tctgaatgat taatcatatc
    23281 gataatttca ctcgcagttt ctaggaaatg gtctttgcca atctccttaa aatctgtaag
    23341 taatgccatt tcagcttcat taacctcttg atgaatgatt ttttgccatt gattaaaaac
    23401 agcttctaat ttgctttccg tatcatcaga gtagatagac aaattaacgg ttaagtaact
    23461 tttaccatct ttattcgtta acataaatag tggtaaataa aacaagccat ctttaaaact
    23521 ttgccattct ttctctgtat cacgctcagg atcaaaggca aaaccaccaa agtaaattgg
    23581 tccagtagca tctacggttg cattggttac actagttcgc agtctcttct caattttctc
    23641 ttgcagtcca agaaaagcat cttttttctt ctccgccaaa aattgtttcg ttacaccaaa
    23701 accggtcatg gtcagtgtca tttctggatt ttgccagaaa aaacgctcac ctttaaaagc
    23761 cgtgccagct tttttaaaca atttgactgg agacactaat tcatctaact cagttaccca
    23821 gctaaataga gccggttgat cttggcttgc gctacgtttc gcttgattaa ataaatcaag
    23881 aggcaattta gtattcatat gcttatctct ccttttacat tcacatcttc tattatacca
    23941 aaaatagagc taaactgctt ggtttgcgtt ttttctttca tttcgttatt aattattgac
    24001 gttcttgcaa tatttcccta aaatgaaggg tagacatctg aaacatatgg aagtgaaaaa
    24061 ggagagaaaa acatggctaa tgcctcaaaa tctgcactta caaaacaaac tggatttcaa
    24121 aaatggtgga cattacttcg cccccataca cttgtagcct ctttcgttcc agtatttctt
    24181 ggaacatcag tcgcaatgag ctacaccagt tttcatttta cacgttttat cgttatgcta
    24241 attgcttgtt tctttataca aacatccgcc aatctattca atgaatattt tgattataaa
    24301 aaagggcaag atgatgagca ctcggtagga aatggtggtg ctatcgtccg aaatggtatg
    24361 cgcccaggat ttattttatt cctagcaatt ttcttataca tattatcaat tctcggtggt
    24421 gtttatttat ccattgaact taattggtat gtaggattac ttggcgcaat atgtatgctt
    24481 gttggctttc tttatacggg aggaccttat cctattgctt atacgccatt tggtgaaatt
    24541 atggcaggat tctttatggg gggaattatt actttcattt ccttctatat tcaagcagaa
    24601 tttattagtt cgtttatcgt atacgtatcg attccagtaa tggtgctcgt tggtaacttg
    24661 ctacttgcta atagtattcg tgatttagta cctgataaga aaaatggtcg tttaacctta
    24721 gctatcttgc taggtcgcaa atgggcaacc gttctttttg cagctgcttt tctattcagt
    24781 tacgtatttg aaatcgccct tattttcaca caagatgctc cgtggtggac gcttctgatt
    24841 ttacttagtt tgccagaagc tattcgcgcc gtgcgtcgtt tcatcggcaa aacttcgccg
    24901 attacaatgg tcccagccat gaaatccaca tctaaagcat taactatctt tggtattaca
    24961 ttggcccttg cttacctttt aagtctatta tccagaaatt tattcatgta aaaaaactgg
    25021 ttgtcctcgt gacaaccagt ttttttattt agacccaatt tggacttgct gtttattttg
    25081 ggcatatttc gctaattcta tcgataaatc atatcgtaaa aatggcgtaa taatataaat
    25141 cccttggaaa tgctcacaaa tcgcatccac taattcacga gcaattgcca tgccttcttc
    25201 atttgcatga ccgtgctctt ccgcctctct cattcgctcc cgcacatcat ctgtcaaacg
    25261 aatcccggga acctcattat gcagaaattc cgcattccga ctagacaata atggcataac
    25321 cccaataaaa agtggcacat caatatttgc tttttgcaag gcttctttta ataagatagc
    25381 tttattcaca tcataaattg gctgtgtaat aatataatcg gcaccatatt ccacttttcg
    25441 ctcaattaac ctaaccgctt tctctaagtt cagcacattc ggattaaatg ccgctccaac
    25501 atggaatcgt gccttttctt tcagtgattt cccagtataa gaaatcccat cattgaactt
    25561 tttaattagc tgaactaatt ccacagacct taaatcaaac accgaagacg ctccagggaa
    25621 atcacctact ttagttggat cacctgtaat cgcaagcaca tcatgcagcc ccaatttatg
    25681 aaatcccatc acatgcgaat gcatcccaac caaattatga tcccgcgtcg tcaaatgaat
    25741 gagtggttta ataccatatt catgcttcaa aatcgaagct agcgccatat tactaatccg
    25801 cggcgtggca agcgaattat ccgaaatcgt aatcgcatca acgcctgcct cgtcaagtgc
    25861 ctgggctcct tcaaaaaatt tcgtcgtatc aaaagtcctc ggcggatcta gttcaaccaa
    25921 aatcgttaaa cgttccttca ctttatcaag caaacgttca ccagaatcca catcctccac
    25981 ttcttctgga acaagttcca atatcggccg aacttctttt tccaaaatgg gttttgttgt
    26041 ttcaaggcct tttcgtaaag cacgaatatg atctggcgtc gtgccacaac aaccaccaat
    26101 aatccgagca ccttcttgcc gaaaaacctc cccataatgt tcaaaataat ccgtgtcaga
    26161 ctgataaatc acttttcctt cttgcatctc tggcaaacta gcattgggat aaactgccaa
    26221 ataagcatta tcatacaacg gcactgtttc aagagcacgc gccatatggt aaggaccaag
    26281 tcggcaatta ataccaacta catccgctcc aagcgcaata agttcttcca gcgcatccgg
    26341 caattttttc ccgttttgaa gaatacccgg ctcatgcata gagacattcg caactaccgg
    26401 taaatcagta gtctcacgaa gaattttcaa cactgtttta agctcatcta aatcataata
    26461 cgtttccagc aaaatcgcat ccacaccatc taacaaaaaa cagtatagct gctccctaaa
    26521 acttcgcttg atttcttcga gtggagccgc tggaagtctt gcatccactg cgccatttat
    26581 tccaccaatc gtcccaaaaa tatacgttcc agtccctctt gccgcttcct ttgctaaccg
    26641 aatggctgct tgattaatac gcttcacttc atcttctaaa ccatatcgcg ctaatttaat
    26701 ataatttgca ccatacgtat tcgtttgaat aatatccgcc ccagcaccaa tatatgcttt
    26761 atgaatagca acaatatctt ccggatgaga caaatttagc tcttcaaacg aacgatccac
    26821 tccataagaa taaagcaaag tgcccatcgc gccgtcagca attaatactt tttcacttaa
    26881 atcttttctt aaattcattt cgcaacactt cccttcttaa tgaaagaaag tgcttgtttt
    26941 aaatcagcaa tcaagtcatc ggcatcttct agtccagctg aaaaacgtaa taatcctggc
    27001 gtaattcctt gcgccaaacg ctcctcttcc ggaacagccg catgagacat tttagccggg
    27061 taagaaagaa tactctccac cgcgcccaaa ctcacagaaa ataccggcaa ttccaaatgt
    27121 gttactagtt ctcgcacagc ttcctcactg cctaaatcaa acgataaaac ggccccgcca
    27181 cttgtcgcct gttccacttg aatgtcataa cccgcatgag aaggtaaccc cggataatgc
    27241 actgccacca catctggctc cgcatttaaa aatagcgcaa ttttctccgc tgtttccgtc
    27301 ccagccttca tccgcacaga aagtgttttt agtccgcgca ataacaacca cgaatcctgc
    27361 actccaagaa ccccaccagt cgaattttgc aaaaagtaca ctgcttcagc cagattagga
    27421 ttattggtga caattagccc cgccaaaata tcactatgcc ctccaagaaa tttcgtcgca
    27481 ctatgaataa ccaagtctgc acctaattct aacggttttt gaattaacgg cgtcaaaaat
    27541 gtattatcaa caaacgtata acacccattc gctttcgcaa gttttgcaac agtccgaata
    27601 tctgtcacat gcagcaacgg attagaaggt gtttccaagt aaaccagttt cgtattcgct
    27661 tgaaatgcct tcgcaacttc gtcaatattt gtcgtatcaa caaaagtatg cgtaatccca
    27721 aaacgcggca acacttgctc cacaaaacga aacgtcccgc cgtacacatc tttcgcaatg
    27781 ataaaatggt ctcccttaga aagagtaaag agcgctgcag aaacagccgc catcccacta
    27841 gcaaaggcaa aaccattcgt accaccttcc agttccgcaa tcgcttgttc cactttttct
    27901 ctcgttgggt tcccacttct cgcataatca taagcgtgat aattatcaaa gtcatgctga
    27961 tggaaagtag acgataaatg aattggcgta ttaagcgcac ctgtctcttt atcaatcccg
    28021 aggctcgctt taatcacagc cgtatcttgc gcatattcat tagccacgag cgctcacccc
    28081 ttccaaaacc gcatcgagtg ccttagataa atcagcaatc aaatcttcac tagcttcaat
    28141 tccaaccgaa atgcgcaata atttgtctgt aagtccataa gaattccgca actcttcagg
    28201 aatatctgcg tgcgtttgtg ttgttggata agtaatcaaa ctctccaccc cgcctaaact
    28261 ttccgcaaaa gtaaataact caagttcttt caaaagtggc gatacgagcg ccgcatcttg
    28321 aataaagaaa ctaatcatcc caccgcgccc tggataacga acttcctcca ccaattcatg
    28381 tgattccaaa aacgccgcga ttttctctgc attcgcttga tgttgtctta cacgcaaaac
    28441 cagcgtctta aggccacgaa tcaataacca actatcaaat ggcgatagca ctgcacccgt
    28501 cgcatttaac tgattaaaaa agaaattccc aagtcgctcc tcttttacaa taaccgcccc
    28561 agcaagcaca tcattatgcc caccaagata cttcgtcgca ctatgaatca caatatccgc
    28621 gcccaaagtt aacggctgtt gtaaaattgg tgtataaaat gtattatcca caatcacaag
    28681 taaatcatgc gcacctgccc attcagacac agccgcaata tctgtttcct gcattaaagg
    28741 atttgttggt gtctcaataa aaatcgcctt cgtttccgga cgaactaatt tctccaaatc
    28801 agcaatctcc gccccgtccc aatacgaaaa tccaatatta tattgcgcac caaactgttc
    28861 aaaatatcta aaagtccccc cgtacaaatc ctgtgaacta ataatatgtt cgccagtttt
    28921 aaaaagctgg aaaacaagtt gaatcgcact catccctgaa ctcgttgcaa aagcatgcgt
    28981 tccattttct agttccgcga gcgcttcctg taaagcatct cgcgtcggat ttccagttct
    29041 agtataatca taccccgttg acactccaag atcggcatgc tggtaagctg tagagaagta
    29101 gactggcata ttgacagcac ccgttctttc acattttcta tttccaattt gcgctgctat
    29161 cgtctcttgt ttcagctttg ccataattac ctctcctcca ttcctttatt tctctaatac
    29221 ttgatattcc gcacgaactt ctttagtcgc tttaatcata tcttgaagtg ccgcaatcgt
    29281 ttcaggctct ttacgcgttt tcaacccaca atctgggtta atccaaaatt gttttgcatc
    29341 aattgcacgt aacgctcggc gaatattgtc ttggatttca gtcacagtcg gaacgcgtgg
    29401 actatgaata tcataaaccc caagaccaat ttccttatca tacgtcactt cctcaaatgt
    29461 cgaaattatc tccccgtgac ttcttgacgt ttcaatcgaa ataacatccg catctagagc
    29521 actaatcgta tcaataatat cgtcaaagtc cgaataacac atatgcgtat gaatttgcgt
    29581 atcattttgg accgaagcag tcgttaattt aaacgaataa actgcatcat ctaaatattt
    29641 ttgccatctt gcttgtttta atggtaaacc ttcacgtaaa gctggctcat ccacttggat
    29701 aactttaatg ccattacgtt ctaacgcttc tacttcttta cgaagcgcaa gtccaacctg
    29761 atttgcaact acactctccg gcacatcatc acgaacaaaa ctccaattaa taattgtcac
    29821 cggcgccgtt agcattccct tcactgggcg cttcgttaac gactgggcat agacactttc
    29881 tttcacggta atttcctctg taaaagcaac atccccgtag ataagtggtg gacgaaccgc
    29941 tctcgaacca taagactgta cccatccaaa tttagttgct tggaaaccag ccaatttttg
    30001 cccgaaatat tccaccatat ctgtccgttc aaattccccg tgaactaata catcaatatc
    30061 caaatcctct tgaattttaa tccagcgagc cgtttctttt tcaataaaag cattatattc
    30121 tgcatcggtt atgttccctt ttaaccagtc agcgcgcgtc ttccgaactt ccggtgattg
    30181 tggaaaactt ccgattgttg tcgttgggaa aagcggtaat ttcaaccaag catgttgcaa
    30241 cttaatccgt tccgcaaatg gcaactcccg gtccacccgc acatttttca aattagcaat
    30301 cgcttcttga acttctaaat tatttcgatg actagattca ttgagcgccg tcactgctgc
    30361 acgagattct tctagttcag ctgccacact ttccgcacca ttcgtcaaag ccttcgtcaa
    30421 aatagtaatc tcctctaatt tttgatcagc aaatgataag ccaccaagaa tcacttcatc
    30481 caaatctggc tcacttaact tcgtcaccgg tacatggagc aatgaattag aaggttgaac
    30541 aatcaatttt ccatccgcca cataattcgc aatctccgta agtagttcca gtttagcatc
    30601 caagtcacta cgccaaacat tccgtccatc caccacaccg gccgctaaat acttatcttc
    30661 cggaaatccg tgagctttta acgcttttat cgaatcacca tgatcatgaa caaagtcaat
    30721 cccaatcgcc gcaactggta aattaacaac ctcttcataa taatccaaac tttcaaaata
    30781 agtttgtaac tctattttca aatttggaac tgccgtttga aacgcttgat atactttttc
    30841 aaataacgca atttcttttt tatcaaaact agttgcaaga tatggctcgt caatttgcac
    30901 ccacttggca ccagctgcct caagttcttt caaaatctct acatacgccg gaataaattt
    30961 atctaacaat acttcaaaac tttttgcatc gctacctttt ccaagtttta aataagtaat
    31021 tggcccaaca agcactggtt ttccttcaat accaagctct ttcttcgctt cttcgtaata
    31081 gtatagtgcc cgattatcca acactttcgg ctccgcatca gcgagttctg gaacaatata
    31141 gtgatagttc gtattaaacc atttagtcat ttcagaggcc accgcgtcat ttttaccacg
    31201 tgcaatatca aaatatgtat ttagcgaaac tttccctcca tcatgctgaa aacgttttgg
    31261 aataatccca aatgtaacac tcgtatcaag cacttgatca taaaaactaa agtcaccaac
    31321 tggaatcaaa tcaatccctt tatcttgttg tttttttagc gcatgtaatc ttagaatctt
    31381 tgtttccgcc aataattcct tttctgaaat tgtgccattc caaaactttt ctagtgcacg
    31441 tttccattca cgtttctctc caagtctcgg ataccccaag tttgaactaa ttgcctttac
    31501 catacttatc accttatcct ctccattttt tgccaataaa aaacctccct agagaactag
    31561 agaggtttgg aagtttcgat acacaaatac agtgaaactt tttaagtctc tcttatctct
    31621 cgaagcatca cacttcgcag gatttagcac cttttcaacg aattgaaagg ttgctgggtt
    31681 tcaacgggcc agtccctcta ccactcataa taagagtaat ttatttagtt tttttaatca
    31741 cttaaattgg attgaaatca tcataccact tgcacctaaa aactgtcaat cattaatttc
    31801 ccattttctt ttcaagtgca tctttcctag ctccaaatac tagcaacaaa cagccaagca
    31861 caaggattcc ggctactaca aaataaaata tttgatttcc aaaaatcccg atcatcattc
    31921 cagtcgcgct cggcccaata atgctcccca aactgaagca catgccaacc aaaatattcc
    31981 cagccggaag caattcaagt ggcgttaaat ccgtcatata agataatcca agcgagtata
    32041 aagatccaag taaaatcccc aaaacaaaga agaaaaccac atataaaact ggtatcttaa
    32101 caaatgctgt caacataaaa acaactgctc ctgctcccgt caaaagaggt aaaacttttc
    32161 ctcgtccaaa cttatcacta acaatcccaa taggcacctg aaaaataatc gtccctaccg
    32221 aaaaagaaga aataaccatc gctatcatca tcgtatcgag cccatcgcgc aacccaacaa
    32281 ccggaaaagt cgcattaagt ccagtctcca aaattccata taaaaacggt ggaatcatcg
    32341 ctacccaagc caatttaaat acatccgaaa aacgtttcaa actaccccaa aaagatattt
    32401 ttcgaattac agccttttca gcaacaaagt cattacgaac aaaccaaacg agtccccaag
    32461 ctatcaaaac taaaattcca gataaaaaga aaggcaagtt cgcatttatt tttgccaaat
    32521 taaccaattg tggcccaatc gcaaatccta atgagaaaaa caacccataa atagccatat
    32581 tccggccacg tttacttgga tcactcatcg ccccaatcca agtctgcgaa gaaaaatgta
    32641 acatatgatc ccccacacca ataagcaacc ttaatataaa ccaaaaatat aaattaaacc
    32701 aaattggaaa agccaaaatc gaaaccgcaa ctagtcctcc cccaactaaa ataatcggct
    32761 tataaccata tttatgaagt ggggcctcaa taaatggaga aataagtaaa actcctaaat
    32821 agattcccgt agcatgaaac ccattaattc ctgcacttat acctttctct tctaatatta
    32881 tcgcaataag aggtaataaa accccctgtg acaatcctga aatggcaaca accatcgtca
    32941 aaatccaaaa cttcccttta gcccccatta gatacctcca aaactttact aaataaaaaa
    33001 acaatgtcac aaattgacat tgttctttag gatgacccgt acgggattcg aacccgtgtt
    33061 accgccgtga aagggcggtg tcttaaccgc ttgaccaacg ggccatatct ggcggagaag
    33121 gagggatttg aaccctcgcg ccgcgcgagc gacctacacc cttagcaggg gcgcctcttc
    33181 agccacttga gtacttcccc agatataaaa aacttattct tattgaaaga ataactccac
    33241 aggcaggact cgaacctgcg accgatcggt taacagccga ttgctctacc aactgagcta
    33301 ctgtggaata aaatgggcct aaatggactc gaaccatcga cctcacgctt atcaggcgtg
    33361 cgctctaacc agctgagcta taggccccag taaaactata ttcatggtaa aaagcgggtg
    33421 atgggaatcg aacccacgac aacagcttgg aaggctgtag ttttaccact aaactacacc
    33481 cgcataatat aatttttaaa aacaaagggc ggataatggg aatcgaaccc acgaatgcct
    33541 gaaccacaat caggtgcgtt aaccacttcg ccatatccgc cataaggcaa aaatgtttaa
    33601 aaaaagaatg gcttgggaca gaatcgaact gccgacacct tgagcttcaa tcaagtgctc
    33661 taccaactga gctaccaagc cataatggcg gtcccgacgg gatttgaacc cgcgatctcc
    33721 tgcgtgacag gcaggcatgt taacccctac accacggaac cactattgcg ggggcaggat
    33781 ttgaacctac gaccttcggg ttatgagccc gacgagctac cagactgctc caccccgcga
    33841 caataatatt aaattttagt ccacatatca caagtgaaaa acggaggaag agggattcga
    33901 acccccgcgc ggtattaccc gcctgtcggt tttcaagacc gatcccttca gccagacttg
    33961 ggtattcctc catgataata ataaagtgac aagtggacct tgcaggactc gaacctgcga
    34021 ccggacggtt atgagccgtc tgctctaacc aactgagcta aaggtccaag attgaaaata
    34081 gcggcggagg gagtcgaacc cacgaccttt cgggtatgaa ccgaatgctc tagccagctg
    34141 agctacaccg ccataataat aaggcaacta ttttctactt aaatgtgaag caagtggagc
    34201 ctagcgggat cgaaccgctg acctcctgcg tgcaaagcag gcgctctccc agctgagcta
    34261 aggccccata ataataaggg attaaactat cgggaagaca ggattcgaac ctgcgacccc
    34321 ttggtcccaa accaagtgct ctaccaagct gagctacttc ccgtttaata aagtgcgccc
    34381 aagaggagtc gaacctctaa ccgcttgatt cgtagtcaag tactctatcc agttgagcta
    34441 tgggcgcaaa taaaagtgcc gaggaccgga atcgaaccgg tacggatatc actatccgca
    34501 ggattttaag tcctgtgcgt ctgccagttc cgccaccccg gcgttgctat aaaatatgga
    34561 gcggaagacg gggttcgaac ccgcgacccc caccttggca aggtgatgtt ctaccactga
    34621 actacttccg catattcca
//
LOCUS       DASEAA010000008        34489 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.008, whole genome shotgun sequence.
ACCESSION   DASEAA010000008 DASEAA010000000
VERSION     DASEAA010000008.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 34489)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 34489)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..34489
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.008"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            94..1299
                     /locus_tag="U0342_000343"
     CDS             94..1299
                     /locus_tag="U0342_000343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonium transporter"
                     /protein_id="HEM2421707.1"
                     /translation="MESVFMFFCTLLVWLMTPGIALFYGGMVRRKNVLSTAMYSFSSM
                     AIVSILWVIVGYSLAFAPGNGFIGSFDWTFLHNVGFAANDTYSDAIPHILFMMFQMTF
                     AILTVAIISGAFAERMNFSAYLIFIILWSLLVYSPVAHWVWGDGGWLRNLGALDFAGG
                     NVVHISSGVTGLVLAIMIGRRKEADSASPHNLPLALIGGILVWFGWYGFNVGSALTID
                     NVAMIAFVNTNTAAAAGIIGWGLVEWLTNKKPTMLGTISGAIAGLVSITPAAGFVTVP
                     SSLIIGFLGGALCFWAVFWLKGKVKYDDALDAFGLHGIGGIWGGIATGLFATTKVNEA
                     GADGLFYGNASLVVKQLIAIGSTVAYVAIATAIIVVIIKLFLPIRVNEEQEYKGLDLT
                     LHGEKAYQE"
     gene            1313..1678
                     /locus_tag="U0342_000344"
     CDS             1313..1678
                     /locus_tag="U0342_000344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="P-II family nitrogen regulator"
                     /protein_id="HEM2421708.1"
                     /translation="MSGLTKIEIITRPNRFHLFQKELAKIGVSGLTVTKALGTGLEKG
                     FIELYRGTKKESNIHERMKIEIVVSTVPVEDVLRVVKETLRTGEPGDGKVFIYPLAEV
                     VKISTGETGIDALQDKPSK"
     gene            1828..2208
                     /locus_tag="U0342_000345"
     CDS             1828..2208
                     /locus_tag="U0342_000345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421709.1"
                     /translation="MRKIPIFTVLVAILLFGGYYLYQHASSKVDVTFNFVVDQKSKNN
                     TITGKIDGAGNKSITLPLSEESWDAVKKGNRYNVEATFYNKNKISSSEAKELDGPFWS
                     NDSNRGLLVNKVHVENIQELSDDF"
     gene            complement(2248..4023)
                     /gene="aspS"
                     /locus_tag="U0342_000346"
     CDS             complement(2248..4023)
                     /gene="aspS"
                     /locus_tag="U0342_000346"
                     /EC_number="6.1.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate--tRNA ligase"
                     /protein_id="HEM2421710.1"
                     /translation="MEKRTSYCGELNEAHIGQSVVLHGWVQKRRDLGGLIFIDLRDRE
                     GIVQVVFNPEFSKEALEIADSVRNEFVVTIKGTVHARGEKAINEKLATGKVEVLAEEI
                     TILNSSKTPPFYIEDGVNVSDELRLKYRYLDLRRPEMNNIFKMRHTVTRTFRNKLDAL
                     GFFDIETPYLTKSTPEGARDYLVPSRVYPGNFYALPQSPQILKQLLMTAGFDKYYQIV
                     RCFRDEDLRGDRQPEFTQIDLETSFLTKEEIQAITEDMLVDVVKEAKNITIDKPFPRM
                     TYKEAMDRFGSDKPDIRFGLELQNVSDVVKDVDFKVFQSAIENGGEVKAINAKAAAAN
                     FSRKDLDALGVFVANYGAKGLAWLKVEAGELKGPIAKFFPEEKATELKASLQAEDGDL
                     LLFAADKADIVAASLGALRNKLGKELNLINEEELAFLWVTDWPLFEYDEEAGRYVSAH
                     HPFTLPKEEDIPLLETDSSKVMAEAYDIVLNGYEIGGGSLRIYKKEVQESMFRALGFT
                     DESAKEQFGFLMDALEYGTPPHGGIALGLDRIVMILAGRNNLRDTIAFPKTGSAVDPL
                     TNAPGEVSEAQLAELKLETVKKETN"
     gene            complement(4025..5302)
                     /locus_tag="U0342_000347"
     CDS             complement(4025..5302)
                     /locus_tag="U0342_000347"
                     /EC_number="6.1.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine--tRNA ligase"
                     /protein_id="HEM2421711.1"
                     /translation="MDLQLPRGTRDILPEEVSKWHFLETEFKKVCENYQYEEIRTPVF
                     EHTELFERGVGDSTDIVSKEMYTFQDKGGRSLTLRPEGTASVVRAFVEHKLYGEVSQP
                     IKMYYNEPMFRYERPQGGRQRQFTQMGIEALGSDDPSIDVEVISLAMEFFRKIGLINI
                     KLVINSLGDKESRLKHREALVAHFEPHIDEFCAECQVRLHKNPLRILDCKKDHDNPLI
                     QSAPSILDFLNEESVAYFENVKKYLNALEIPFEIDSTMVRGLDYYNHTTFEIMSVEEG
                     FGAKTTLCGGGRYHGLVREFGGPDTPGMGFGIGVERILLALEKADIKIPAKKPLEVYV
                     ITAQPEAELKAVTLVNKLRQNGISAEKDYLKRKFKAQLKDANRKNAVYTIILGEEELQ
                     TGNYQLKNMETGEQEAVSETTILEKLINTKGEN"
     misc_binding    complement(5366..5593)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            5753..7036
                     /locus_tag="U0342_000348"
     CDS             5753..7036
                     /locus_tag="U0342_000348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM2421712.1"
                     /translation="MKNKFIFITVVSILLIAAGIFTTIAMANANSVVVKAEVLNVRSG
                     PGLAYDVTSQARKNEVLRVVGEENQWYKVQLDNGNSGWVASWLVENTDVSAASNSVAI
                     VSSDGGLNVREKPSTSSKALGLLNNGDQVTVTSQQNGWAQIQYNGTSAWVSSDYLTIR
                     ESVTKVDESELQTVTIRDDSTNIRNKPSRDGAVIEKANSGQGFAIQGVQGDWYKIRTT
                     SGEEGYVANWVVDVSDKGQTSSPRSKTTKLSEATIVIDPGHGGNDPGAKGSNGTIEKE
                     MTLKTAKQLKQKLEARGAKVILTRNSDKYVSLKGRTNIAAENNADVFISIHFDSLEDA
                     SKGVSGQTTYYYDNSDKSLAESINTTLGKDLPTTNRGARVGDYYVVRENSQPAVLLEL
                     GYLSSAKDESNINSASYRSQIAESVTDGLSNYFSN"
     gene            complement(7074..7526)
                     /locus_tag="U0342_000349"
     CDS             complement(7074..7526)
                     /locus_tag="U0342_000349"
                     /EC_number="3.1.1.96"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-tyrosyl-tRNA(Tyr) deacylase"
                     /protein_id="HEM2421713.1"
                     /translation="MRVLLQRCYEASVSVEEEVISEIAGGLCLLVGFTHKDTPETVDY
                     MAKKIVGLRIFEDESEKMNISLAERGGAILSVSQFALYADVSRGKRPSFTKSAPAEKA
                     ETLYDLFNQKLTEAGFIVETGVFGAMMDVKIVNHGPVTIMLDSDEMRK"
     gene            complement(7542..9758)
                     /locus_tag="U0342_000350"
     CDS             complement(7542..9758)
                     /locus_tag="U0342_000350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM2421714.1"
                     /translation="MAKEQNLTAEQVIDMASHYMNQEHLALVKKAYEFARDSHKEQFR
                     KSGEPYIIHPIQVAGILVELKMDPSTVASGFLHDVVEDTPVTLADLEEVFGSEVAMLV
                     DGVTKLGKIKYKSHEEQQAENHRKMFIAMAQDIRVILIKLADRLHNMRTLKHLPVEKQ
                     RRIANETLEIFAPLAHRLGISRVKWELEDTALRYLNPQQYYRIVHLMKQKRDARERYL
                     HDVIDGVNENLDELNIQADISGRPKHIYSIYRKMSEQNKQFNEIYDLLAVRIVVSSIK
                     DCYAVLGIIHTRWKPMPGRFKDYIAMPKSNMYQSIHTTVIGPQGEPLEVQIRTHEMHQ
                     IAEYGVAAHWAYKEGKVVNSKTSFDNKLTWFREILEYQNESDNAEEFMESLKLDLFSD
                     VVYVFTPKGDVYELPNGSVPLDFAYRVHTEIGNKTIGAKINGKIVTLDYKLKTGDIID
                     ILTSKHSYGPSRDWLKLVQTSQARNKIKQFFKRQAKEENVEKGRDLVEKEIRQLGFES
                     KKIMTPENLRKLADKLNFSHEDDLFAAVGYNGITALQVANRLTEKLRKERELEAETEK
                     LLTQSENKPSNSDANNEKLKIKHNAGVVVQGVGNLLIRLSRCCNPVPGDAIVGYITKG
                     RGISIHRQDCPNVQAIEPERLIEVDWEDADSQAKNDYNVDIEIYGYNRNGLLNDILQV
                     INSLTSNINGVNAKVDNNKMATLVVTLQIHNINHLQRVVDKIKQIPDVYTVRRLMN"
     gene            complement(9964..10485)
                     /locus_tag="U0342_000351"
     CDS             complement(9964..10485)
                     /locus_tag="U0342_000351"
                     /EC_number="2.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine phosphoribosyltransferase"
                     /protein_id="HEM2421715.1"
                     /translation="MEIKDLQDYVAIVNDWPKKGIVFKDITPLMNDGEAYRFATDKIV
                     EYAKELKIDIIVGPEARGFIIGCPVAYALGIGFAPVRKPGKLPRETIEMEYDLEYGTN
                     KLSMHSDAIKPGQRVLITDDLLATGGTIEATIKLVEELGGIVAGCAFLIELKELEGHK
                     KLNGYDRLILMQL"
     gene            complement(10475..12826)
                     /gene="recJ"
                     /locus_tag="U0342_000352"
     CDS             complement(10475..12826)
                     /gene="recJ"
                     /locus_tag="U0342_000352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded-DNA-specific exonuclease RecJ"
                     /protein_id="HEM2421716.1"
                     /translation="MIHSKYLWNIEEAAEDKASQLAEQLKISLPLAKLLWKRKITTQG
                     QFDKFFHPEKYESYDPFLFAEMDLAVARIKRAIELNEQILVYGDYDADGVTSIAVLMK
                     TLRHLGANAEFYIPNRFTEGYGPNITAFDMAKNQGTDLIITVDNGIAALEVMTHAKEI
                     GLDVIVTDHHEPREVMPEAVAVIHPKHPKSAYPFDELAGVGVAYKLSHALLGEEPKEL
                     LDLVAVGTVADLVSLTDENRLLVQLGLRQLRESANLGLSVLAKKASLKLEEATEETIG
                     FGLAPRLNAVGRLGPADPAADLLLTEDPEEALFLAEEIDDANKERKQIVVDTTKLAME
                     AIEAKETLGNVLVVYGEGWNTGILGIVASKLVGTYSRPAIVLGIDPVTGIAKGSGRSV
                     DAFHLYQALDKHRDLMTAFGGHPMAAGLTLPAENLTELEAKLQEEASFLSEEDFRPAL
                     KIEEKINIADVSVAFIAQLEKLAPFGMDNPKPIFLLENMHLKGTKRIGADKTHLKTML
                     ATEENDATLDSIGFGVGDLVEKISPNAAVDVVGELSINEWNNVKKPQLRMMDIHISHW
                     QLFDVRNKSEWARILQEQTESRVFVCFEERTIGTLGEKNYILVDEKADFTADFQTEEL
                     VFADMPTKTELVETIVRETKPERIFVHFDAAEGNQIPAIPDRLAFAELYSLIKKFQPF
                     PIKKYTPRLMQKFGWNKEQIDFMSKVFFDLEFAKMESGQIIINEVVEKRNLDESLVYQ
                     QKVEEITTRKKLLYSNYTELHSWMESMMETSIYPNAEELENGN"
     gene            complement(12931..13275)
                     /locus_tag="U0342_000353"
     CDS             complement(12931..13275)
                     /locus_tag="U0342_000353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1049 domain-containing protein"
                     /protein_id="HEM2421717.1"
                     /translation="MKENKVQWQVIAGIILALIIAIFAVINVDPVEVNFLFAQAEWPL
                     ILIILGSVLCGCLIIFFLNIAKSRGMKKQVKQLTSEKAELERQLAAAKAMKTHSSKVE
                     TRDTENVVDTTK"
     gene            complement(13373..15637)
                     /gene="secDF"
                     /locus_tag="U0342_000354"
     CDS             complement(13373..15637)
                     /gene="secDF"
                     /locus_tag="U0342_000354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein translocase subunit SecDF"
                     /protein_id="HEM2421718.1"
                     /translation="MVKKSKIVIFFLVVAIIFGAVFGTAKMVMQNINLGLDLQGGFEV
                     LYEVSPADGKGTVSKQTLTDTVTSLDKRINSLGVAEPSIQIEGDNRIRVQLAGVTDQE
                     EARKMLSTTAQLSFRDANDKMMMNGSDLVAGGAKQAFDSSNNPIVTLKLKSADKFASV
                     TKTILAEAPDNQLVIWLDWKEGQKYKTEREKKDPAYLSAPNVSSVLDTDKVEISGSFT
                     TEEAKDLADLLNSGALPVKMKEVYSTSVGAQFGQDALQETILAGIIGVIAIFIFMMAV
                     YRLPGVIACITLVAYTYLVLLILSLLNATLTLPGIAGLILGIGMAVDANVITYERIKE
                     EIKVGRSTKAAFEVGGKEAFRAILDGNLTTLIVAAVLFYFGTSSIKGFATVLIISILV
                     SFLTAVWGSRFLLGLLVKSNWLNNKPGFFAVKRKDIHNLHEGINSFSLKTHFDRFDFV
                     KHHRLFLSIFAAIVIVGIVILSIFRLNLGIDFASGTRAEVTANQTLTETQIKKDLDAI
                     NMPSDDIVFQGSGSKTAVVSYKGTLSQNDVAKFKNYFEDKYKHEPSISTVSPTVGKEL
                     AKNGFWALGVASVLIVLYIAVRFEFYMGIAAILSLLFDAFIIFIFFSVTRLEVDLTFI
                     AAVLTVIGYSINDTIVTADRIRDISMKMQRFKTKEEIANAVNKALRQTFTRSINTILT
                     VIFTVLALVLFGSESILNFSIALLVGLVSSVFSSIFMAMQLWYVFKARQLRKKGPIST
                     VKKKKPRNNGQPVV"
     gene            complement(15738..16028)
                     /locus_tag="U0342_000355"
     CDS             complement(15738..16028)
                     /locus_tag="U0342_000355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="post-transcriptional regulator"
                     /protein_id="HEM2421719.1"
                     /translation="MDTFSEWYEDLAPAISIKVEDFHILGYREIKASHIWAFLTEEKW
                     KNEPTPALHERINDVMQMNIGQLMQFIMTTAEQESNNHVSQADSMLQPNVED"
     gene            complement(16171..16500)
                     /gene="yajC"
                     /locus_tag="U0342_000356"
     CDS             complement(16171..16500)
                     /gene="yajC"
                     /locus_tag="U0342_000356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit YajC"
                     /protein_id="HEM2421720.1"
                     /translation="MGGIVTFIPIILMIVLFYFLLIRPQQKRQKEVQNMQSSLAKGDK
                     IITIGGLHGIVEAIEDGTVILKCGNSKLTFDRNAIRTVLEKGNAVSNPVVAETTSDDT
                     EVVEDNK"
     gene            complement(16534..17673)
                     /gene="tgt"
                     /locus_tag="U0342_000357"
     CDS             complement(16534..17673)
                     /gene="tgt"
                     /locus_tag="U0342_000357"
                     /EC_number="2.4.2.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA guanosine(34) transglycosylase Tgt"
                     /protein_id="HEM2421721.1"
                     /translation="MSAIRYELIKTDKQTGARLGKIHTPHGTFDTPMFMPVGTLATVK
                     TMSPEELKAMGAGIILSNTYHLWLRPGEELIREAGGLHKFMNWDQPILTDSGGFQVFS
                     LSKMRDIKEEGVHFRNHLNGDKLFLSPEKAIQIQNALGSDIMMSFDECPPYPASHEYM
                     KKSVERTSRWAERGLKAHVRPEDQGLFGIVQGGAYEDLRAQSAKDLVSLDFPGYSIGG
                     LSVGEPKDVMNRVLEHTTPLLPANKPRYLMGVGSPDSLIDGVIRGVDMFDCVLPTRIA
                     RNGTCMTSSGRLVIKNAKFTHDFRPIDENCDCYTCKNYSRAYIRHLIRCEETFGIRLT
                     TYHNLHFLLNLMKQVRGAIMEDRLADFREEFFEQYGFNRPDAKNF"
     gene            complement(17760..18788)
                     /gene="queA"
                     /locus_tag="U0342_000358"
     CDS             complement(17760..18788)
                     /gene="queA"
                     /locus_tag="U0342_000358"
                     /EC_number="2.4.99.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA preQ1(34) S-adenosylmethionine
                     ribosyltransferase-isomerase QueA"
                     /protein_id="HEM2421722.1"
                     /translation="MKVEDFDFDLPEELIAQTPLLDRTSSRLMVLDKKSGDIKDQHFT
                     DIISYLNEGDALVLNDTRVLPARLHGIKDETGAHIEVLLLKQKEGNAWETLVKPAKRI
                     RKGATITFGDGALKAICLEELEHGGRILEFSYEGIFYEVLEQLGEMPLPPYIKEQLAD
                     QDRYQTVYAKENGSAAAPTAGLHFTEDLLAKISAKGVEIIFVTLHVGLGTFRPVDVED
                     TTNHKMHSEFYRLTEESAERINKIKAQGGKVVAVGTTSIRTLETIASRHDGKLVAESG
                     WTEIFISPGYTFQAVDALITNFHLPKSTLIMLVSALSDRTKILAAYNHAVEEQYRFFS
                     FGDAMFIH"
     gene            complement(18792..19799)
                     /gene="ruvB"
                     /locus_tag="U0342_000359"
     CDS             complement(18792..19799)
                     /gene="ruvB"
                     /locus_tag="U0342_000359"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration DNA helicase
                     RuvB"
                     /protein_id="HEM2421723.1"
                     /translation="MDERIISSETVDAEEVSFETSLRPQNLSQYIGQDKVKNNLTVFI
                     EAATLRNEALDHVLLYGPPGLGKTTLAMVIAAEMGSQIKTTSGPAIERPGDLATILTS
                     LEPGDVLFIDEIHRLSRAIEEILYPAMEDYCLDIVIGTGPTARSVRLDLPPFTLIGAT
                     TRAGLLSAPLRDRFGVIDHLEFYTEEQLTEIVLRTSNILDTKIDDLGAREIARRSRGT
                     PRIANRLLKRVRDFAQVRGNGTVTEKLAKEALTLLQVDPRGLDTIDQKLLHTIIQSFR
                     GGPVGLDTIAASIGEERETIEDMQEPYLLQIGFLQRTPRGRIATETAYNHLGISYEKE
                     V"
     gene            complement(19815..20420)
                     /gene="ruvA"
                     /locus_tag="U0342_000360"
     CDS             complement(19815..20420)
                     /gene="ruvA"
                     /locus_tag="U0342_000360"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction branch migration protein RuvA"
                     /protein_id="HEM2421724.1"
                     /translation="MYDYIKGTVTTITPEYIVVEAGQIGYQIITGNPFSFQRLEGTEA
                     QVFLYQHVREDNISLFGFQTTEERYLFKKLLSVSGIGPKSALAIIASGDVVPLISAIE
                     SEDDVYLTKFPSVGKKTARQIILDLKGKLADVVASEIVYVAPENDMVAGLSPQLEEAV
                     LALEALGYSTRELKKVIPKLSKEEDLTSDAYIKLALQLMTK"
     gene            complement(20544..21479)
                     /locus_tag="U0342_000361"
     CDS             complement(20544..21479)
                     /locus_tag="U0342_000361"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM2421725.1"
                     /translation="MKPRKVMIIGAGNVGTAAAHAFVNQKFVEELILVDLNKERVEGN
                     RKDLADAAAFMPGKMDITVRDASDCADVDIAVITVTAGPLKEGQTRLDELRSTSRIVS
                     SIVPEMMKGGFNGIFLIATNPCDIITYQVWKLSGLPRERVLGTGVWLDTTRLRRLLAE
                     KLDIAAQSIDAFILGEHGDSQFPVWSHSSIYGKPVNEYSVEKLGEALDLKQIGETARD
                     TGFEIYHQKGCTEYGIGGTIVEICRHIFSGSQRALTVSCVLDGEYGESGLAIGVPAVL
                     SQNGVKEIISLKLDEKEKEAFANSVAVIKKSIQSI"
     gene            complement(21549..22274)
                     /locus_tag="U0342_000362"
     CDS             complement(21549..22274)
                     /locus_tag="U0342_000362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2421726.1"
                     /translation="MSGHSKWNNIQGRKNAQDSKRSKVFQKLAREIFVAAKKGPDPNL
                     NPSLRLVMDKAKAVNMPNDNIKRAIDKAAGNTSGENYDEVTYEGYAPGGIAVLVHALT
                     DNKNRTSTNVRVAFNKNGGSLGETGSVSYMFDRKGYLVILREGLDVDEEEFMLEAIEA
                     GADDVEVSEDVFEIFTDPATFPEVKEALQEAGYTFATAELSMFPTVYNEVAENNQTQF
                     DKMLEALEDDDDVQEVYTNAEIN"
     gene            complement(22385..23233)
                     /gene="pheA"
                     /locus_tag="U0342_000363"
     CDS             complement(22385..23233)
                     /gene="pheA"
                     /locus_tag="U0342_000363"
                     /EC_number="4.2.1.51"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011702338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydratase"
                     /protein_id="HEM2421727.1"
                     /translation="MKIAYLGPAASFTHAAAAKAFPKEEMIAKSTIPDCIMAIEKEDV
                     DVAVVPIENTIEGSVNITLDYLFHFSSVPVVAEIVLPIAQHLMVHPAHVSAWKSVQKV
                     MSHPQALAQCHTFLQAELYGVEREVTPSTAYAAKWVSNNPTELVAAIAPRMAANEYGL
                     EIVKENAQDLELNQTRFFVLSRKPVSILLPKEEEKTSISVILPNNMPGALHKVLSTFA
                     WRDIDLSKIESRPLKTSLGEYFFLIDVLSEGKETLVTNALDEITLLGGTANKLGTYHV
                     HRLQTT"
     gene            complement(23300..24589)
                     /gene="obgE"
                     /locus_tag="U0342_000364"
     CDS             complement(23300..24589)
                     /gene="obgE"
                     /locus_tag="U0342_000364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase ObgE"
                     /protein_id="HEM2421728.1"
                     /translation="MFVDQVKIYVKAGNGGDGMVAFRREKFVPNGGPAGGDGGKGADV
                     VFVVDEGLRTLVDFRFKRIFKAEHGEHGMSKSMHGRGAEDLVVKVPQGTIVKDIDTGE
                     IIADLVAHGQRAVIAKAGRGGRGNKRFATPANPAPELSENGEPGQERNVQLELKVLAD
                     VGLVGFPSVGKSTLLSVVSAARPKIAAYHFTTIVPNLGMVDAGDGRSFVMADLPGLIE
                     GASQGVGLGHQFLRHIERTRVIVHVIDMSGSEGRVPYEDYMAINNELEQYNLRLMERP
                     QIIVANKMDMPDAEENLNEFKTKIAEDIPVFPISAVTKTGLRELLLAIADKLETTPEF
                     PLNEILEQEDEDTVLYKYVAEEPDFEISREPDGTFVLSGAKIERLFTMTNFERDASIS
                     RFARQLRAMGVDEALRKRGAKDGDIVRLLDYEFEFMD"
     gene            complement(24748..26241)
                     /gene="glpK"
                     /locus_tag="U0342_000365"
     CDS             complement(24748..26241)
                     /gene="glpK"
                     /locus_tag="U0342_000365"
                     /EC_number="2.7.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase GlpK"
                     /protein_id="HEM2421729.1"
                     /translation="MEKKYILALDQGTTSSRAMIIDEEGEVIGVAQEEFDQIFPKPGW
                     VEHNANEIWASILAVIAGVLLKTNISSKEIAGIGITNQRETTVIWDKESGNPIYNAIV
                     WQSRQTEDICKQLRKDGYEDTIRSKTGLLIDPYFAGTKARWILDHVDGAQERAEKGEL
                     LFGTIDTWLVWKLTGGRAHITDYSNASRTLLYNIYDLEWDDELLKMLNIPKAMLPEVR
                     PSSEVYADTVPYHFFGEEVPVAGIAGDQQAALFGQGCFEKGMAKNTYGTGCFLLMNTG
                     EKAVRSENGLLTTLAWGIDGKVEYALEGSIFVAGSAIQWLRDGLRMVRQSSDSENYAS
                     RIESSDGVYVVPAFVGLGAPYWDSDVRGAVFGLTRGTEKEQFIRATLESLAYQTRDVL
                     YAMEQDSGISLKTLRVDGGASANNFLMQFQSDILGVPVERPENKETTVLGAAFLAGLA
                     VGVWKDKNEIKKHWKLDKRFEVEMKDEQREDLYEGWHKAVKAAQAFK"
     gene            complement(26316..27134)
                     /locus_tag="U0342_000366"
     CDS             complement(26316..27134)
                     /locus_tag="U0342_000366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aquaporin family protein"
                     /protein_id="HEM2421730.1"
                     /translation="MIDTSLATQFLGEVIGTAILIILGAGVVAGVSLKRSKAENGGWV
                     VITLAWGLGVTMGVYVSGYMSMAHLNPAVTIGMALAGAFPWNYVLPYILAQFIGAFIG
                     ATLIWLHYYPHWKQTEDKPTKLGVFATAPAIRHFTSNFFGEALGTFILVFGLLSLGAN
                     SFSDGLNPLVVGALIVAIGMSLGGTTGYAINPARDLGPRIAHFVWPISGKGGSDWGYS
                     WVPVIGPIMGGALGALGYNAIINGELGMWFWVFAVLFVLILILTMQLDKKKDLA"
     gene            complement(27500..27790)
                     /gene="rpmA"
                     /locus_tag="U0342_000367"
     CDS             complement(27500..27790)
                     /gene="rpmA"
                     /locus_tag="U0342_000367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L27"
                     /protein_id="HEM2421731.1"
                     /translation="MLKFDIQHFAHKKGGGSTSNGRDSESKRLGAKRADGQFVTGGSI
                     LYRQRGTKIYPGTNVGRGGDDTLFAKTDGVVRFERMGRDKKKVSVYPEVQEA"
     gene            complement(27804..28121)
                     /locus_tag="U0342_000368"
     CDS             complement(27804..28121)
                     /locus_tag="U0342_000368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal-processing cysteine protease Prp"
                     /protein_id="HEM2421732.1"
                     /translation="MIQVDVMREDNQIISFTMSGHADFAEHGSDLVCAGASSIAFGMV
                     NAISEVRDFEPVIEESEGYLYYSVPADYVGDDVVQILLTGMENQLRSLAYSYPDHIKI
                     NSK"
     gene            complement(28140..28448)
                     /gene="rplU"
                     /locus_tag="U0342_000369"
     CDS             complement(28140..28448)
                     /gene="rplU"
                     /locus_tag="U0342_000369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L21"
                     /protein_id="HEM2421733.1"
                     /translation="MYAIIETGGKQIKVEAGQEIYVEKLAGEVGDVVTFDKVLFVGGD
                     SAKVGVPFVEGATVTAKVEKQGRAKKLTVYKYKPKKNYHKKQGHRQPYTKLTIDAINA
                     "
     misc_feature    complement(28461..28539)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00559"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L21 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00559"
     gene            complement(28605..29966)
                     /locus_tag="U0342_000370"
     CDS             complement(28605..29966)
                     /locus_tag="U0342_000370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease E/G"
                     /protein_id="HEM2421734.1"
                     /translation="MKKLVVSAAPIEKRIAAMEDDLLIDIEIVRPSEKVQVGDIYYGF
                     IQKIDRKVEAAFVDLGNNNKGFIHLKDIPESYDKTQGAKIPVQIVREGSATKLPLLTG
                     ILEFSGDLLIYLYGKEYISISKRIGDKIRLKKITETMVEENEAVIIRSNAEFATKEQL
                     QQALVQARDKHQTLLKEASKRKKPGLLLSVASGILNSTKQFIQRYAPSEVITDDFEFA
                     KMLEMLWPDKQIIIKKSADLFADLGIKAQIDRLARPVVHLSNGSSLFIEKTEAMWVVD
                     VNSGKFKGTTAKEKTVESVNLKAVPEILRQIRLRNMSGMILVDFIGGMSELGYTALYE
                     ALEIKTREEYITTQVAALSQSGLLQLTRRKKQQSFLETTTMPCPVCYATGHVASKETL
                     AFELERELSGIMQNEPSNIQIITTEDVLDTFLDLNTLSNAPIDWEVADERVPFYQIGR
                     VEN"
     gene            complement(30019..30819)
                     /gene="minD"
                     /locus_tag="U0342_000371"
     CDS             complement(30019..30819)
                     /gene="minD"
                     /locus_tag="U0342_000371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinD"
                     /protein_id="HEM2421735.1"
                     /translation="MGEAIVITSGKGGVGKTTSTANLGTALALQGKKVCLIDMDIGLR
                     NLDVVLGLENRIIYDLVDVVEGRCKIHQAMIKDKRFDDLLFLLPAAQTTDKNAVSGEQ
                     MVDLINQLRPDYDFILIDCPAGIETGYKNAVAGADKAIVVTTPEISAVRDADRIIGLL
                     EKEDIEPPKLIINRIRTQMMMNGDVMDIDEITTHLSIELLGIIIDDDEVIRSSNSGDP
                     VAMLPNNRASQGYRNIARRILGESIPLMSIETKKAGFFARLKQLFSGK"
     gene            complement(30822..31499)
                     /gene="minC"
                     /locus_tag="U0342_000372"
     CDS             complement(30822..31499)
                     /gene="minC"
                     /locus_tag="U0342_000372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein MinC"
                     /protein_id="HEM2421736.1"
                     /translation="MKKNVQIKGTKDGISIFLSDKASISELQQELTQLLADQKQNPYS
                     GEKLEVQVQIGNRLFSEEEEREISTIIHENSQMKISAFYSNVMSKDEAKKWKENDQIF
                     SMATIIRSGQVVQVPGDFLLIGDVNPGGQIRSNGNVFVLGNIKGIIHAGFEGNGNAIV
                     AGKFLYPSQVRIADKVYGFDSEDYKEVTETDLFSAFVNDAGEIVIDGIHKIRKIRPEI
                     SNFQGGR"
     gene            complement(31677..32195)
                     /gene="mreD"
                     /locus_tag="U0342_000373"
     CDS             complement(31677..32195)
                     /gene="mreD"
                     /locus_tag="U0342_000373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreD"
                     /protein_id="HEM2421737.1"
                     /translation="MNVKKNIALPAIMVGTFILEGVFSLQFANGLFNDRHLFIPHFLL
                     IMLTIMTCFYKRNTTLAYAFILGLLFDIYYTGVMGIYFAIFPFTVYITDKFMKVLQNN
                     ILLVGLIAIFNIILTESLVYAFYYLIGTTTMSIPVFIDQRLWTTILINLAFFLVVFFP
                     FRLFLDRLVKSE"
     gene            complement(32198..33085)
                     /gene="mreC"
                     /locus_tag="U0342_000374"
     CDS             complement(32198..33085)
                     /gene="mreC"
                     /locus_tag="U0342_000374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreC"
                     /protein_id="HEM2421738.1"
                     /translation="MPQFFLNKRLIILLISIIVLVALVGFSLRDRENASWPEQFVKDV
                     VGFGENIVAKPTSFISGAVDGVVDLKNTYTENQHLKERLEELAQLESEVADLKKENKD
                     LKESLDITDSIRDYDPLNASVISRNPTNWNDQVEIDKGSSDGVKPDMAVTTPSGLIGK
                     VTTTGAKSATVELLTSSDVKNRVSAKVQGKENAFGIINGYDSDTKLLELKQLPYDMKF
                     KKGQKVVTSGLGGKFPAGIFIGTIEKVETDKMGLSQTAFIKPGADMYDLNHVTVLKRS
                     AEAGTTDDDTTSSDTTGGQ"
     gene            complement(33171..34184)
                     /locus_tag="U0342_000375"
     CDS             complement(33171..34184)
                     /locus_tag="U0342_000375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEM2421739.1"
                     /translation="MFGFGNKDIGIDLGTANTLVYMKGKGIVLREPSVVAMKKDTQEI
                     VAVGSDAKNMIGRTPGNIVAIRPMKDGVIADYDTTAAMMKYYIQKAGKSVNASKPRVM
                     ICVPSGITGVEKRAVIDATRQAGAKDAFTIEEPFAAAIGAGLPVGEPTGSMVVDIGGG
                     TTEVAVISLGGIVTSRSVRTAGDDLDEVIINYIRKKYNLLIGDRTAEAIKMEIGSASP
                     NGLDLSPFSIRGRDLVTGLPKTIEITPEEISGALADTVAAIIDAVKGTLENTPPELSA
                     DIMDKGIVLTGGGALLRNLDTVISEETKMPVIIADEPLDCVAIGTGKALENMDMYKRK
                     KMN"
BASE COUNT        10132 a         7395 c         5745 g        11217 t
ORIGIN      
        1 aaaatattct tgcctttatt aaaatatagt gtattataaa cgcataaata atatattaca
       61 tgttagttta tctaacaaaa aggagagttg agtatggaat cagtatttat gttcttttgt
      121 actttattgg tttggttaat gacaccaggt attgcattat tttacggtgg gatggttcga
      181 cgcaaaaatg tgttgagtac ggccatgtat agttttagtt cgatggcaat tgtatctatc
      241 ctttgggtga tagttgggta ttcattagct ttcgcccctg gaaacggctt tataggaagt
      301 tttgactgga ccttcctcca taatgttggc ttcgcagcaa acgatactta ctcagatgct
      361 attccacata ttctattcat gatgtttcaa atgactttcg caattttgac tgtagctatc
      421 atttctgggg catttgcaga aagaatgaat ttctccgctt atttgatttt cattatctta
      481 tggtcgttac ttgtttattc ccctgttgct cactgggttt ggggtgacgg tggttggtta
      541 cgtaatctcg gcgcacttga tttcgccggt gggaatgttg ttcatattag ttcaggtgta
      601 acaggattag tccttgcaat tatgattgga cgtagaaaag aagccgattc tgcttcacct
      661 cataatttac ctttagcgct tattggtggt attctagttt ggtttggttg gtatggtttt
      721 aatgttggta gcgcccttac aattgataat gtggctatga tagcttttgt taatacgaat
      781 acagctgctg ctgcaggtat tatcggttgg ggtttggttg aatggttgac gaataaaaag
      841 ccaactatgc ttggaaccat ttccggagca attgctggtt tagtatccat tacccctgcc
      901 gctggatttg ttaccgttcc aagttcactt atcattggtt tcctcggcgg agcactatgc
      961 ttctgggctg tgttctggtt gaaaggaaaa gtaaaatatg atgatgcact tgatgcattc
     1021 ggacttcatg gaatcggagg tatttggggt ggtatcgcaa ccggcctttt cgccacaaca
     1081 aaagtaaatg aagctggagc agacggatta ttctacggca atgcttctct cgtagtaaaa
     1141 caattaatcg ccattggttc aacggtagca tatgtggcta tagcgacagc aataatcgtc
     1201 gtaattatca aactattttt accaatccgt gtaaacgaag aacaagaata taaaggactt
     1261 gatttgacgc tgcacggcga aaaagcatat caagaataaa ggaggcaaca atatgtctgg
     1321 attaacaaaa atcgaaatca ttactcgccc aaaccgcttt cacttgtttc aaaaagagct
     1381 tgcgaaaatc ggcgtgagcg gcttaactgt cacaaaagca ctcggtacag ggttagaaaa
     1441 aggatttatc gaactttatc gcggtacaaa aaaagaaagc aatattcatg aacgaatgaa
     1501 aattgaaatc gttgtttcca ctgtcccggt tgaggatgta cttcgtgtcg ttaaagaaac
     1561 gctacgtact ggcgaacccg gcgacggaaa agtatttatt tacccacttg cagaagtcgt
     1621 taaaatcagc actggcgaaa ccggaatcga cgcattacaa gataaaccat caaaatgaat
     1681 agttaaaatg gtgaattaat taaaaatggg gcctctattc taaaaaatca atgagaaatg
     1741 gcgtttaccc cttccgcttc ttagctttta cacttataat gaaaaaggaa gaacgtttag
     1801 aacagataag gaggcgcgaa attccctatg cgtaaaatcc ccattttcac cgttctagta
     1861 gctatcctgc tttttggcgg ttattatctt tatcaacacg cttcgtcaaa agtagacgtt
     1921 acctttaatt tcgtggtgga ccaaaaatca aaaaacaata ccatcactgg caaaattgat
     1981 ggcgctggaa acaaatcaat tacactacca ctttctgaag agagttggga tgcagtaaaa
     2041 aaagggaatc gctacaatgt ggaagccact ttttataata aaaataaaat cagctccagt
     2101 gaagcgaaag aattggacgg cccattctgg tccaatgatt ccaatcgagg gttattagtt
     2161 aataaagtac acgttgaaaa cattcaagaa ttaagtgatg atttttaaaa cgaaaagaag
     2221 gtgagcattt gcgctcacct tcttttttta gtttgtttct tttttcactg tctcgagttt
     2281 caactctgct agctgtgctt cactcacttc acctggtgca tttgttagcg gatccactgc
     2341 actacctgtt ttagggaatg ctattgtgtc acgcaagtta tttcggccag ctaagatcat
     2401 aacgatacga tctaatccaa gcgcgatacc accatgaggc ggtgtaccat attctaacgc
     2461 atccattagg aagccaaatt gttctttcgc tgattcatcc gtaaagccaa gtgcacggaa
     2521 catcgattct tgcacttctt ttttataaat ccgtaatgaa cctccgccga tttcatatcc
     2581 atttaatacg atatcataag cttctgccat tactttagaa gagtccgttt caagaagtgg
     2641 aatatcttct tcttttggta aagtgaatgg atgatgcgca gatacatagc gccctgcttc
     2701 ttcatcatat tcaaataacg gccaatcagt cacccataag aaagcaagtt cttcttcatt
     2761 gattaagttt aactctttac caagtttatt acgaagcgcc cccagtgatg ctgcaacgat
     2821 atctgcttta tcagctgcaa atagtaataa atcgccatct tctgcttgta gagatgcttt
     2881 tagttctgtt gctttttctt cagggaagaa tttagcaatc gggcctttca gttcaccagc
     2941 ctctactttt aaccaagcaa gaccttttgc cccgtagtta gcaacaaaaa cacctagtgc
     3001 atctaaatct ttgcgtgaaa aattagctgc ggctgctttt gcattgattg ctttcacttc
     3061 tccaccattt tcgattgcgg attggaaaac tttaaaatca acatctttta cgacatcgga
     3121 tacattttgt aattctaaac caaaacgaat atccggttta tcactgccaa aacgatccat
     3181 tgcttcttta tatgtcatac gaggaaacgg tttgtcgata gtaatatttt tcgcttcttt
     3241 cactacatct actaacatat cttccgtaat cgcttggatt tcttctttcg ttaaaaagct
     3301 agtctctaaa tcgatttgtg taaattcagg ttgacggtca ccgcgcaaat cctcatcgcg
     3361 gaagcaacgt acgatttggt aatatttatc aaacccagca gtcattagta actgttttaa
     3421 aatttgcgga gattgtggca atgcatagaa gttaccaggg taaacacgac ttggtacaag
     3481 ataatcgcgt gcaccttctg gcgtactttt cgttaaataa ggtgtttcaa tatcaaagaa
     3541 tccgagtgca tccagcttat tgcggaacgt tctcgttacc gtgtgacgca ttttgaaaat
     3601 gttgttcatt tccgggcgtc gtaagtctaa ataacggtat ttcaaacgca attcatccga
     3661 aacattcaca ccatcttcaa tataaaatgg tggtgtttta gacgaattta aaatggtaat
     3721 ttcttctgct aaaacttcta ctttaccagt tgctaatttt tcattgatag ctttttcacc
     3781 acgagcatgg actgtccctt taatagtaac aacaaattca tttcgaacac tatcagcgat
     3841 ttcaagcgct tctttcgaaa attcaggatt gaaaacaact tggacaattc cttcgcgatc
     3901 acgtaaatca ataaaaatta aaccacctaa gtcgcgtctt ttttgcaccc acccatgaag
     3961 gacaacactt tgaccaatat gcgcttcgtt taattcaccg cagtaacttg tacgtttttc
     4021 cattttaatt ctcccccttg gtgtttatta atttttctag tatagttgtt tcagacacag
     4081 cttcttgctc gcctgtttcc atatttttca attgataatt gcctgtttgt aattcttctt
     4141 caccaagaat aatggtatat acggcatttt ttctattggc gtcttttagt tgtgctttga
     4201 atttacgttt taagtaatct ttttctgcac taatgccgtt ttgtcttaat ttatttacga
     4261 gtgttacggc ttttagttct gcttccggtt gcgctgtaat cacataaacc tctaacggtt
     4321 ttttcgcagg tattttgatg tccgcttttt ctagcgccag taaaatacgt tccacaccaa
     4381 taccaaagcc cattcctggt gtatctgggc caccaaactc tctcactaaa ccgtgatatc
     4441 ttccgccacc acaaagcgtt gttttcgcgc caaatccttc ttctacgctc ataatttcaa
     4501 atgtcgtatg gttataataa tctaaaccac gaaccatcgt tgaatcaatt tcaaacggaa
     4561 tctctagcgc atttaagtat ttttttacat tttcaaaata ggcaacagat tcttcattta
     4621 aaaagtccag aatagatggt gccgattgaa ttagtggatt gtcatgatct tttttacagt
     4681 ctaaaatacg cagtggattt ttgtgtaacc gcacttggca ttccgcacaa aattcatcaa
     4741 tatgtggttc aaaatgcgca accagggctt cccggtgttt tagacgactt tctttatcac
     4801 caagactatt aatgaccaat ttaatattta ttagaccaat ttttctgaaa aactccattg
     4861 ctagtgaaat tacttctaca tcaatagaag gatcatcact tccaagcgcc tcaatgccca
     4921 tttgagtaaa ctggcgttgt cttccgcctt gtggacgttc ataacgaaac attggctcat
     4981 tataatacat tttgattggt tggcttactt cgccgtataa tttatgctca acaaaagcac
     5041 gaacaacaga agcggtcccc tctggtctca gcgttaaact tctgccaccc ttatcttgga
     5101 aagtgtacat ttcttttgat acgatatcgg tggaatcacc aaccccgcgt tcaaataatt
     5161 ctgtatgttc aaaaacaggt gttctaattt cttcatattg atagttctca cacacttttt
     5221 taaactctgt ctctaaaaaa tgccatttac taacctcttc tggcaaaata tctcgtgtcc
     5281 ctctcggtaa ttgcaaatcc atcaccataa gcctcctttt tcacttcaaa atataaagaa
     5341 aaacccccgt cacttgttat aaaaaacaag ggacgagagt ttgtttacac ccgtggtacc
     5401 accctaatta gaactactaa tgagtcctca cttaagtcag ttaacgcctg aatacgttct
     5461 tgcttactgt tttcaacaag aaacctcgag agtgtctttt cagaaaatgt gactatcttt
     5521 atcctttcag ccaaatggga taaattctct gtatagcatg gatttcctta cttttctctg
     5581 tcgctagttt taaatatgaa ttattctaag attactaaaa acacactgaa aagtcaacat
     5641 tttgccagtt tttttataaa aaaccacttt ctagttccat gaaagcgcat tttatggtaa
     5701 cattttactg tcagataaaa gtttatgagt atatgggtgg tgttagcttt aaatgaagaa
     5761 taaattcatt tttatcaccg ttgtctccat tttattgatt gcagcaggta tttttacaac
     5821 catagcaatg gcgaacgcga attccgtagt cgtcaaagca gaagtcttga atgtccgcag
     5881 cggtcctggt ttagcatatg atgtaacgag ccaagccaga aaaaatgaag tactccgggt
     5941 agtcggtgaa gaaaatcaat ggtacaaagt tcagttagat aacggaaata gcggttgggt
     6001 tgcaagctgg ttagtagaaa acactgatgt cagcgcagca agtaacagtg tcgctatcgt
     6061 ttcttctgac ggcggtttga atgtacgtga aaaaccaagt acctcaagta aagcacttgg
     6121 attgctaaat aatggtgatc aagtaacagt tactagccaa caaaacggct gggcgcaaat
     6181 ccaatataac ggtacaagcg catgggttag ctccgattac ttaacgattc gtgaatctgt
     6241 tacaaaagta gatgaaagcg agctacaaac agtaaccatt cgcgatgact ccactaatat
     6301 tagaaataag ccaagtcgtg atggcgccgt catcgaaaaa gcaaattctg gtcaagggtt
     6361 cgctattcaa ggagtacaag gtgactggta taagatacgt acgacaagcg gcgaagaagg
     6421 ttatgtagct aactgggtag tcgatgtttc tgacaaaggt caaacatcca gccctcgaag
     6481 caaaacaacc aaattatccg aagcaaccat cgttattgac cccggacacg gtggcaacga
     6541 tccgggcgct aaagggtcaa atggcacaat tgaaaaagaa atgactttga agacagcaaa
     6601 acaattaaaa caaaaattag aagctagagg cgctaaagta atcctaacga gaaacagtga
     6661 taaatatgtc tctctaaaag gaagaacaaa tatagctgcc gaaaataatg cagatgtgtt
     6721 tattagtatt cactttgata gcttagaaga cgcgagcaaa ggggtaagcg ggcaaacaac
     6781 ttattattat gataatagtg ataaatcgct tgctgaaagt attaatacta cgctcgggaa
     6841 agacctccct actactaatc gtggtgcaag agtcggcgat tattatgtag tcagagaaaa
     6901 ttctcaacca gcagtccttc tagaacttgg ttatctaagt tctgcaaaag atgaaagtaa
     6961 tatcaactca gcatcataca gaagccaaat cgctgaatca gtaacagatg ggctatctaa
     7021 ttacttctct aattaaaaaa aacaatcatt caggagactg aatgattgtt tttttattta
     7081 cgcatttcat ctgaatcgag cattattgtt actggaccgt gattgacaat tttcacatcc
     7141 atcattgcgc caaatactcc agtttcaaca ataaaacccg cttctgtaag tttttgatta
     7201 aataagtcat acagtgtttc tgctttttct gctggggcgg attttgtaaa gcttggacgt
     7261 tttcctctac ttacatcagc gtataaagcg aactgggaaa cgctaagaat cgcgccgcct
     7321 cgttctgcta aagaaatatt catcttctcg gattcatctt caaaaattcg taatccaacg
     7381 attttttttg ccatatagtc cacggtttct ggggtatctt tatgggtgaa tccaactaat
     7441 aaacaaagac ctccagctat ttcgctaatg acttcctcct ccacactcac ggaagcttca
     7501 taacaccgtt gcagtagtac acgcatcgct tctccactcc tttagttcat taatcttctc
     7561 actgtataaa catctggaat ttgttttatt ttatccacta cgcgttgtaa atgattaata
     7621 ttatgaatct gtagcgtgac cactaatgtt gccatcttgt tgttatcaac cttagcattg
     7681 acgccgttaa tattggaagt tagactgtta atcacttgta gaatatcatt tagcaaaccg
     7741 ttacgattat agccataaat ttcgatgtct acattatagt catttttcgc ttgtgaatca
     7801 gcatcttccc agtccacttc gatcagccgc tctggttcaa tagcttgaac atttgggcaa
     7861 tcttgacgat gtatagaaat gcctcgacct tttgtaatat aaccaacgat agcatcacca
     7921 ggcactggat tacaacatct ggatagtcga atcaatagat tacctactcc ttgaacaact
     7981 actcctgcat tatgcttaat cttcagtttc tcattgttag catctgaatt cgaaggttta
     8041 ttttctgatt gcgtcaataa cttctctgtt tctgcttcta attcacgttc ttttcgaagt
     8101 ttttctgtta agcggttagc tacttgtaaa gctgtaatgc cattataacc aacagctgca
     8161 aacaaatcat cttcatgcga aaaatttagt ttatcagcta atttacgaag attttctggc
     8221 gtcataattt ttttcgattc gaatccaagt tgtctaattt ctttctcaac taaatcgcga
     8281 cctttttcga cattctcttc ttttgcttgt cgtttgaaaa attgtttaat tttatttcgc
     8341 gcttgcgaag tttgaactaa tttaagccag tcgcgacttg ggccgtaaga atgtttggac
     8401 gttaaaatat caataatatc gcccgttttt aatttatagt cgagtgtcac aatttttccg
     8461 ttaattttag ccccgattgt tttgtttccg atttcggtat ggacacggta agcaaaatcg
     8521 agtggtacag agccatttgg taactcgtac acatcgcctt ttggagtaaa tacgtaaaca
     8581 acatccgaaa ataagtcgag tttcaagctt tccataaact cttccgcatt atccgattca
     8641 ttttgatatt ctaaaatttc tcggaaccat gttaatttat tatcgaatga agttttggaa
     8701 ttaaccactt tgccttcttt ataggcccag tgtgccgcaa ccccgtattc agcgatttgg
     8761 tgcatttcgt gcgttctaat ttgaacttca agcggttctc cttgaggccc tataaccgtc
     8821 gtgtgaatcg attgatacat attcgacttc ggcatcgcaa tataatcttt aaagcgacct
     8881 ggcatcggtt tccagcgcgt atgaataata ccaagaacag catagcaatc cttgatacta
     8941 ctaacgacaa ttcgaacagc caacaaatca taaatttcgt taaattgttt attttgttcg
     9001 ctcattttcc ggtaaatcga ataaatatgt tttggtcttc cagaaatatc cgcttgaata
     9061 ttgagttcat ctagattttc attcacaccg tcaatcacat catgcaaata acgctctctt
     9121 gcatcccgct tttgtttcat taagtggacg atgcgataat attgttgtgg atttaaataa
     9181 cgcagcgctg tatcttccag ctcccatttc actcgcgaaa tacccaagcg atgtgcaagt
     9241 ggcgcaaaaa tttctaatgt ttcgttcgca attctacgtt gtttttccac gggcaaatgt
     9301 tttaatgtcc gcatattatg caaacggtcc gccagtttga ttaaaataac gcgaatatcc
     9361 tgcgccatcg caatgaacat tttccgatga ttttcagctt gttgctcttc gtgtgattta
     9421 tatttaattt taccaagttt cgttactccg tctactagca tggcaacttc actgccaaaa
     9481 acttcttcta aatccgctag tgtgactggc gtatcttcca cgacatcatg taaaaatcca
     9541 gatgcaacgg tcgatggatc catttttaat tcgactaaaa tgccggcaac ttgaattgga
     9601 tgaataatat acggctcacc tgatttacga aattgctctt tatgagaatc gcgcgcaaat
     9661 tcatacgctt tttttacgag cgctagatgt tcctgattca tataatgaga agccatatcg
     9721 atgacctgct cagctgtcag attttgttct ttcgccattt acattcaccc tcttatctcc
     9781 atgtcatata tacaacttaa aaacacccaa aaactgagtg ttctaaaaaa tattcttgtt
     9841 taatattata gcatgagccg tctttgttta gaaagcactt ttccttgatt tttcacattt
     9901 tctggcagtt ttcagctttt taatcaaaaa actaccccta aaataatagg agtagtttga
     9961 tttttataat tgcataagga ttaaacggtc gtaaccattt aattttttat gtccttctag
    10021 ctcttttagt tcgattaaga aagcacaacc agcaacaata ccgcctaatt cttctacaag
    10081 tttgatagtt gcttcgattg ttccaccagt tgcaagtaaa tcatctgtaa ttaaaacgcg
    10141 ttgccccggt ttaatcgcat cactatgcat agataattta ttcgtaccat attctaaatc
    10201 gtattccatt tcgattgttt cacgaggaag ttttcctggt ttacgaacag gcgcaaaacc
    10261 aattcctaac gcataagcaa ctgggcagcc aataataaag ccacgtgctt ctggtccaac
    10321 aataatatca atttttaatt cttttgcgta ttccacaatt ttatctgtag caaaacgata
    10381 tgcttctccg tcattcataa ggggtgtgat gtctttaaat acaatccctt ttttgggcca
    10441 atcgttcaca atcgctacat aatcttgtaa atctttaatt tccattttct agttcctccg
    10501 cattcgggta aattgatgtt tccatcattg attccatcca actatgaagt tccgtatagt
    10561 tagagtacaa cagttttttt cttgtagtta tttcttctac cttttgttga taaacaagtg
    10621 attcgtccag attacgtttt tcaacaactt cattaataat aatctgacca ctttccattt
    10681 tagcaaattc taaatcaaaa aacacctttg acatgaaatc tatttgctct ttattccagc
    10741 caaacttttg cattagccgt ggtgtgtact ttttaattgg aaatggttgg aattttttga
    10801 tgagactata cagctcagca aaggctaacc ggtctggaat tgctggaatt tgattcccct
    10861 ctgctgcatc aaaatggaca aaaatacgct ctggtttcgt ttcacgaaca atcgtttcca
    10921 ctaattcagt cttcgttggc atatccgcaa aaacaagttc ttctgtctgg aaatccgccg
    10981 taaaatcagc tttttcatcc actaaaatat agtttttttc tccaagcgtg ccaatcgttc
    11041 tttcttcaaa acaaacaaaa actcttgatt ctgtttgttc ttggagaatc ctagcccact
    11101 cagatttatt acgtacatcg aaaagttgcc aatgcgagat gtgaatgtcc atcatgcgta
    11161 gttgtggttt tttcacatta ttccattcat tgatggataa ttccccaacc acgtccacgg
    11221 ctgcatttgg agaaattttt tctaccaaat cgcctacacc aaatccgata gaatctaaag
    11281 tggcatcatt ttcctctgta gcaagcattg tttttaaatg ggttttatct gccccaattc
    11341 ttttcgttcc ttttaaatgc atattttcta acaagaaaat tggtttaggg ttatccattc
    11401 caaaaggagc taatttttca agttgagcaa taaatgctac ggaaacatcc gcaatattta
    11461 ttttctcttc tattttcaag gctgggcgga aatcttcttc agaaagaaaa ctcgcttctt
    11521 cttgtaattt agcttctaat tctgttagat tttcagcggg caatgtaaga cccgcagcca
    11581 ttggatgccc accaaatgca gtcattaaat cacgatgttt atcaagcgct tgatacaaat
    11641 gaaatgcatc gacgcttcga ccagatcctt tggcaattcc agtaactgga tcaattccta
    11701 gtacaatcgc cggacgagaa tatgttccaa ctaatttaga agcaactatc cctaaaatcc
    11761 ctgtattcca accctctccg taaacaacga gcacatttcc taatgtttct tttgcctcaa
    11821 ttgcctccat cgcgagcttc gttgtatcaa caactatttg tttacgttct ttattcgcat
    11881 catcaatttc ttctgctaag aaaagtgctt cttctggatc ctctgttaaa agtaaatccg
    11941 ccgctggatc tgctgggcct aaacgaccaa cagcattcag tcgtggagct aaaccaaagc
    12001 caatagtttc ttccgtagcc tcttctaact tcaaactagc ttttttagct aacactgaaa
    12061 gtccaaggtt cgcggattcg cgcaattggc gcaatccaag ttggacaagt aagcgatttt
    12121 catctgttaa agaaactaaa tctgccaccg ttccaactgc aactaaatca agcaattctt
    12181 tcggttcttc tccaagtaat gcatgcgata acttataagc aacacccaca cccgctaatt
    12241 catcaaaagg ataagctgac ttaggatgct tcggatgaat tactgcaaca gcttccggca
    12301 taacttcccg tggttcatgg tgatccgtca caataacatc taaaccaatc tctttggcat
    12361 gcgtcattac ttcaagcgcc gcaataccat tatcaaccgt aataattaaa tccgttcctt
    12421 ggtttttagc catatcaaaa gcagtgatat ttggaccata accttccgta aaacgattag
    12481 gaatataaaa ttcagcattt gctcctaaat gccgcagtgt tttcattaaa acggcaatac
    12541 tagtaactcc atctgcatca taatctccgt aaactaaaat ctgctcattt agttctatcg
    12601 ctcgcttaat tctagcaacc gcaagatcca tttcagcaaa taaaaatggg tcatagcttt
    12661 catatttttc tgggtggaaa aatttatcga attgtccttg cgttgtaatt tttcttttcc
    12721 aaagtagttt tgcaagtgga agcgaaattt ttagctgttc tgctaattgg cttgctttgt
    12781 cttccgccgc ttcctcgata ttccataagt attttgaatg aatcacatta ccccacctct
    12841 caaccttcct attatatcga aaatcactag aaaaaccaag aggaatcttc taacaaaaaa
    12901 cgccaacata ttttgtcagc gtcccatttt ttatttagtt gtgtctacca cattttctgt
    12961 atcacgtgtt tctactttag atgaatgagt tttcattgct ttagcagctg ctagttggcg
    13021 ttctaattct gctttttcgg atgttaattg ttttacttgt ttcttcattc cacgcgattt
    13081 cgcgatattt aagaaaaaga taattaaaca accacaaaga acagagccta aaataattaa
    13141 aattaatggc cactccgctt gcgcaaataa aaagtttact tctactggat ctacattaat
    13201 aactgcaaaa atagcaataa tgagtgctaa aataatcccc gcaattactt gccactgtac
    13261 tttattttct ttcatgtttt ttctcctcct tgcacaatta tcttattatt tacccgtttc
    13321 taggctatta aaaacgaccg aatctctttt tatgaaattc ggccgttcgt ttttatacga
    13381 caggttgccc gttattacgt ggttttttct ttttaactgt gctaattggg cctttttttc
    13441 gtagttgtcg tgctttgaat acgtaccaca attgcattgc cataaagatg gaggagaata
    13501 cactcgaaac aagtccaaca agtaaggcga tggagaagtt cagaatagac tcactaccaa
    13561 atagtacaag tgccagtacg gtgaaaataa ccgttaaaat ggtattaatt gaacgagtga
    13621 atgtttggcg taatgcttta ttaaccgcat tcgcaatttc ttctttcgtt ttgaaacgtt
    13681 gcatcttcat actaatatcc cgtatccggt cggcggtgac tatcgtgtca ttaatggaat
    13741 aaccgataac cgtcagcacc gcggcaatga aggttaagtc aacctccagc cttgttacac
    13801 tgaagaatat gaagatgata aatgcgtcga atagtaagga cagaatcgcc gcaataccca
    13861 tataaaattc aaaccggact gcaatataaa gtacaatcag cacagacgcc acaccgagtg
    13921 cccagaagcc atttttggca agttctttac cgacagttgg tgaaacggta ctaatgcttg
    13981 gttcgtgctt atacttgtcc tcaaaatagt ttttaaattt agctacatca ttttgtgata
    14041 atgtcccttt ataagaaaca acggctgttt tagaccctga tccttggaaa acaatatcat
    14101 ccgatggcat attaatcgca tctaaatctt tcttaatttg cgtttctgtc agcgtttgat
    14161 tagctgttac ttccgctcgt gtcccactgg caaagtcaat acctagattt agcctaaata
    14221 tggagagaat aacaataccg acaataacaa ttgcagcaaa aatagataag aacagacgat
    14281 gatgttttac aaaatcaaag cgatcaaagt gtgtttttaa gctaaagcta ttaattccct
    14341 catgtaaatt atgaatatct tttcgtttaa ctgcaaagaa tcctggttta ttgttaagcc
    14401 aattactttt cactaataag cctaataaga atcttgatcc ccaaacggct gtcaagaagc
    14461 tgactaaaat actaatgatt agaaccgtag caaaaccttt gatggagctt gttccaaagt
    14521 agaagagaac cgcagctacg ataagtgtcg tcaagttacc atctaaaatc gcacggaatg
    14581 cttctttacc gccgacctca aaagccgctt tcgtcgacct accgactttg atttcttctt
    14641 ttatccgctc gtaggttatt acgttcgcgt caacagccat acctatcccc agaatcaaac
    14701 ctgcaatccc tggtaaagta agtgttgcgt taagcagact cagtattaat agtactaaat
    14761 aagtgtatgc aactaaagtg atacaagcaa taacgcctgg taaacggtaa actgccatca
    14821 tgaaaataaa gatagcaatg accccaataa taccagctaa aattgtttct tgtaacgcat
    14881 cttgcccaaa ttgagcacca acagatgtcg agtaaacttc tttcatttta acagggagtg
    14941 caccagagtt tagcaaatca gctaaatctt ttgcttcttc cgttgtgaaa cttccggaaa
    15001 tttctacttt atctgtatca agcacgctac taacgtttgg tgctgataag taagctgggt
    15061 ctttcttctc gcgttctgtt ttgtattttt gtccttcttt ccaatctaac caaataacta
    15121 attgattgtc aggcgcttcc gctagtattg tttttgttac actagcaaat ttatctgcac
    15181 tttttagttt tagcgtaacg attgggttgt tgcttgaatc gaaagcttgt ttggcaccgc
    15241 ccgcaactaa gtcactacca ttcatcatca tcttgtcatt tgcatctcta aatgataatt
    15301 gggctgtggt tgatagcatt tttcgtgctt cttcctgatc agttacccca gcaagttgaa
    15361 cacgaatacg gttatcccct tcgatttgaa tacttggttc agctacacct aatgaattga
    15421 tacgcttgtc gagtgaagtt accgtatctg tcaatgtttg tttggataca gttcctttgc
    15481 catcagctgg tgaaacttca tatagaactt cgaatccccc ttgaagatcc aagcctaggt
    15541 tgatgttttg cataaccatt tttgcggtac caaatacagc accaaagata attgcaacta
    15601 ctagaaagaa aataactatc ttactctttt ttaccatttc tgtttcgttc ctccctcatc
    15661 taaaccataa caaatcccag tctaacaaca aatacttcta ttttatgtat gaaacccaag
    15721 catttgctaa caggctgtta atcttccaca tttggttgaa gcatactatc tgcttgagaa
    15781 acatggttat tagattcttg ttcagctgtt gtcataataa attgcattaa ttgtccaata
    15841 ttcatttgca taacatcatt tatacgttca tgcaaagcag gggttggttc attcttccac
    15901 ttttcttctg ttaaaaatgc ccaaatgtgg cttgccttga tttctcggta acctaaaata
    15961 tgaaaatctt ccacttttat tgaaatcgct ggcgctaaat cttcatacca ttccgaaaat
    16021 gtatccatat caagtcgtcc cctttcttaa acaataagca tattcccatt ttatctaaaa
    16081 aaagcttaaa tgggaagtat aagctctatt tttatggtta aaaaatgcca tttcaccgtt
    16141 taaagggaaa tggcattttt atttcaagta ttatttgttg tcttctacaa cttcagtgtc
    16201 atcagaagtt gtttctgcta caactggatt agaaactgca ttaccttttt caagtacagt
    16261 tctgattgcg ttacggtcaa aagttaattt gctgtttccg catttcaaaa tgactgtgcc
    16321 atcttcaatt gcttcaacaa taccgtgaag tccaccaata gtaataattt tatcaccttt
    16381 tgctaaacta ctttgcatat tttgtacttc tttttgacgt ttttgttgag gtctgattaa
    16441 taagaagtaa aacaaaacga tcatcaagat aattggtata aatgttacaa taccgcccat
    16501 attttccaac tcctttcgat actttatata tatttagaaa ttttttgcat caggacgatt
    16561 gaatccatat tgctcaaaaa attcttccct aaaatcagca agacgatctt ccataatagc
    16621 gccacgaact tgcttcatta agtttaacag aaaatgaaga ttatgataag ttgtaagtcg
    16681 aattccaaat gtttcctcac aacgaatcaa gtgtcgaatg tatgcacgtg agtaattttt
    16741 acaagtataa cagtcacaat tttcatcaat tggacggaaa tcatgggtaa acttagcatt
    16801 tttaataact aagcgaccac tagatgtcat acaagtacca tttcgtgcaa tacgtgtggg
    16861 aagaacacag tcaaacatgt ccactcctcg aattacgcca tcaatcaatg agtcaggcga
    16921 acctactccc attagataac gtggtttatt agctggtagt agtggtgtcg tgtgttccaa
    16981 aacgcgattc atcacgtctt ttggttcacc aacagacaat ccaccaattg agtatccagg
    17041 gaaatctaga gataccagat ctttcgcact ttgcgcacgt aaatcttcgt aagctccacc
    17101 ttggacgata ccgaacaaac cttggtcttc tggtctaacg tgcgctttta agccacgttc
    17161 agcccagcga gatgttcttt ctactgattt cttcatatat tcatgcgacg ctggatatgg
    17221 tggacattcg tcaaaactca tcatgatgtc agatccaagc gcattttgaa tttgaatcgc
    17281 tttttctggt gataggaaaa gtttgtctcc gtttaaatgg ttacggaaat gaacgccttc
    17341 ttctttgata tcacgcattt tactcaaact aaacacctga aaaccacctg aatccgttaa
    17401 gattggttga tcccagttca taaatttatg tagtccgccc gcttctcgga taagttcttc
    17461 tccaggacgc aaccataaat gatacgtatt gcttaaaata atacctgcac ccatggcttt
    17521 taattcttcg ggtgacattg tttttaccgt cgcaagcgtg ccaactggca taaacatagg
    17581 tgtatcaaat gtgccgtgcg gtgtatggat tttaccaaga cgagcacctg tttgtttatc
    17641 tgttttaatt agttcataac gaatggcaga catgtgttac ctctttctta tttactctat
    17701 tcactagcat aacgaaaatt accaatgaaa acaagctttt ctattaattt tttcgcaatt
    17761 taatgaataa acatggcatc gccaaaacta aagaagcgat attgttcttc tacagcatga
    17821 ttataggctg ctaaaatttt cgtgcggtcc gataaagcag acacgagcat aattaatgtt
    17881 gattttggta aatggaaatt cgttattagt gcatctactg cctgaaaagt ataccctggg
    17941 gaaatgaaga tctctgtcca acctgattca gccactagtt tgccgtcatg acgactcgca
    18001 attgtttcta atgttcggat agaagtcgtt ccaactgcaa caacttttcc gccttgtgct
    18061 ttgattttat taattcgctc agcagattct tctgttaaac gataaaattc agaatgcatt
    18121 ttatgattgg tagtatcttc tacgtccact gggcggaatg ttccgagccc tacatgaagc
    18181 gtcacgaaaa tgatttctac accttttgcg ctaattttcg ccagtaaatc ttctgtaaaa
    18241 tgaaggcccg ctgtcggcgc tgctgctgaa ccattctctt tcgcatagac ggtttgataa
    18301 cgatcctgat cagcaagttg ttctttaatg tatggtggaa gtggcatctc gccaagttgt
    18361 tctaaaactt cataaaaaat gccttcataa gaaaattcta aaatccgacc accatgctcg
    18421 agctcttcca agcaaatcgc ttttaaagca ccatcaccaa aagtaatggt agcacctttt
    18481 cgaattcttt tggcaggttt tactaaagtt tcccatgcat tgccttcttt ttgtttcaaa
    18541 aggagcactt caatgtgcgc gccagtttca tctttaatac catgcagcct tgctgggaga
    18601 acacgtgtgt catttaatac tagtgcatcc ccttcgttta aatagctgat aatatcagtg
    18661 aaatgttggt cttttatgtc acctgacttt ttatcaagca ccattagccg gcttgaagtc
    18721 cggtctaata gtggggtttg tgcgattaat tcttctggta aatcaaaatc gaaatcttct
    18781 actttcatgc tttatacctc tttttcataa cttattccta aatggttata cgccgtttca
    18841 gttgcgattc ttccgcgcgg cgtcctttgt agaaaaccga tttgtagtaa atatggttct
    18901 tgcatatctt caatggtttc tcgttcttct ccaatacttg cagcgattgt atccagtcca
    18961 actggaccgc ctctaaatga ttggataatt gtgtggagca atttttggtc aatggtatct
    19021 aatcctcttg gatctacttg aagcaaagta agtgcttctt tcgctagctt ttctgttacc
    19081 gttccgtttc ctcgaacttg cgcgaaatca cgtacccgtt ttaataaacg attggcaatc
    19141 cgtggggttc ctcttgaacg tctagctatt tcacgtgcac caagatcatc aatctttgta
    19201 tctaatatat tcgaagttct gagtacaatt tctgttaact gctcttctgt ataaaattcc
    19261 aagtggtcaa ttacgccaaa acgatctctg agtggtgccg ataaaagtcc cgctcgtgtg
    19321 gtagctccaa tcaatgtaaa tggtggtaag tctagacgaa cagagcgcgc agttggacct
    19381 gttccaatca caatatccaa acaataatct tccattgccg gatataaaat ttcttcaatc
    19441 gctctcgata aacgatggat ttcatcaata aataaaacat cccctggctc aaggcttgtt
    19501 aaaattgtcg ccaagtcacc tggtcgttca attgctggtc cactcgttgt tttaatttga
    19561 ctccccattt cagctgcaat aaccattgca agcgttgttt taccaagccc tggaggtccg
    19621 tataaaagca cgtgatccaa ggcttcattc cggagtgtgg cagcttctat aaaaactgtt
    19681 aaattattct ttactttgtc ttgcccaata tattgtgaaa ggttctgtgg ccgcaaacta
    19741 gtttcaaaag atacttcttc tgcgtctacc gtttcacttg aaataattcg ttcatccatg
    19801 ccacaagctc ctctctattt tgtcattaat tgtagtgcta gcttgatata tgcgtcgctt
    19861 gttaggtctt cttcttttga caattttggt attacttttt ttagttctcg cgtgctataa
    19921 ccgagcgctt ctaaagctaa tacagcttct tctaattgcg gagaaagtcc agcaaccata
    19981 tcgttttctg gagcaacata aacaatttcg ctcgcgacaa catcagctag tttgcctttc
    20041 aaatcaagaa tgatttggcg tgctgttttt ttaccaacgc ttggaaattt ggttaaataa
    20101 acatcgtctt cggattcaat agcagaaatc agtggaacga catcgcctga agcaataata
    20161 gctagcgcgc tttttggtcc aatgcccgaa acactcaata attttttgaa taaataacgt
    20221 tcttctgttg tttgaaaacc gaatagagaa atattatcct cccgcacatg ttgatacaaa
    20281 aagacttgtg cttctgtacc ttctaatcgt tgaaaggaaa acgggtttcc tgtaattatt
    20341 tgatagccga tttgtcctgc ctcgacaaca atatattcgg gtgtaatcgt cgtaacggtt
    20401 ccttttatgt aatcgtacaa tttattcgtc ctctcttcat ttcacgtcat acattatatg
    20461 atagcataaa acggaacgtc tgtactagtt tttgtttata aaagaaacgc ttatttagtt
    20521 tacataataa tattattgac accttaaata gattgaatac tttttttaat aaccgccaca
    20581 gaattcgcaa atgcttcttt ttctttctca tctaatttta aagagatgat ttcttttaca
    20641 ccattttgac ttaaaacggc tggaactccg atagctagac cactttctcc gtattcgcca
    20701 tcgagcacac aagacaccgt taaagcacgc tggctcccac taaatatatg gcgacaaatc
    20761 tcgacaatcg taccacctat gccgtattct gtgcagcctt tttggtggta gatttcaaaa
    20821 ccagtatccc gagcagtttc acctatttgt ttcaaatcta gtgcctcgcc tagtttttcc
    20881 acactatatt cattcactgg tttaccataa atagatgaat gggaccacac ggggaattga
    20941 gaatctccgt gctcaccaag gataaaagca tcgatacttt gagcagcaat atctagtttt
    21001 tctgcgagta aacggcgtaa ccttgttgta tcaagccata cccccgttcc gagtactcgt
    21061 tctcttggta aaccggacaa tttccacact tggtatgtga tgatatcaca cggattcgtc
    21121 gcgattaaga aaataccatt aaacccgcct ttcatcatct cgggcacaat gcttgaaacg
    21181 attcttgaag tacttctcag ttcgtctaaa cgagtttgtc cttcttttaa aggaccagca
    21241 gttacagtga ttacagcgat atctacatct gcacaatcgc tcgcatcacg aacagtaata
    21301 tccattttac cgggcataaa tgcagctgca tcagccaagt ctttccgatt cccttctaca
    21361 cgttctttat ttaaatctac aagaattaac tcttccacaa atttttgatt aacaaatgcg
    21421 tgtgctgcag ctgttcctac atttccagct ccaattatca ttactttacg cggtttcata
    21481 ttttcttcct cctagtgatt catataaaac acccctattc aaattgtccg aaaaaggggt
    21541 gtgttgactt aatttatctc tgcgttcgta taaacttctt gcacgtcatc atcatcttca
    21601 agtgcttcta acattttatc aaattgtgtt tgattatttt ctgcaacttc attataaacc
    21661 gttggaaaca tggataattc agcagtagca aaagtgtacc cggcttcttg caaagcctct
    21721 ttcacttccg gaaaagtagc cggatcagta aaaatttcaa atacatcttc gcttacttcc
    21781 acatcatctg cccctgcttc aatagcctcc agcatgaatt cctcttcgtc cacatctaaa
    21841 ccttcgcgta aaataacaag ataaccttta cgatcaaaca tatagctcac actaccggtt
    21901 tcaccaagac ttccaccgtt tttattaaaa gctacacgaa cattggtgct cgtacgattt
    21961 ttattatctg taagcgcatg gacaagaacc gcaattcctc ccggcgcata tccttcatag
    22021 gttacttcat cataattttc gccactcgta ttaccagcag ctttatcaat agctcgctta
    22081 atattatcgt tcggcatgtt gaccgctttt gctttatcca taactaatcg gagtgacggg
    22141 tttaaattcg gatcaggacc ttttttcgct gcaacaaaaa tttctctcgc taatttttgg
    22201 aatactttgg aacgcttgga atcttgtgca ttttttctac cttgaatatt attccatttt
    22261 gaatgtcctg acatatattt cactcctttt agatttagta aagcttttct cctacaaatt
    22321 ctaacgtaaa aagggaggaa tcgcaataaa aaagttaccg caaaaaattg cgataactct
    22381 ttatttaagt cgtttgtaag cggtgaacgt gataagttcc aagtttattt gccgttccac
    22441 ctaaaagtgt tatttcatca agcgcattag ttacgagcgt ttctttccct tctgaaagta
    22501 catcaatcaa gaaaaagtac tcgcctaatg aggttttaag cggtcttgat tcgattttac
    22561 ttaaatcaat atcccgccaa gcaaacgtag ataagacttt atgtaacgca cctggcatat
    22621 tgttaggcaa aataacagaa atagacgttt tttcttcttc ttttggtaat aaaattgaaa
    22681 caggtttacg acttaaaaca aaaaatcttg tttgatttaa ttccaagtct tgcgcatttt
    22741 ctttgacgat ttcaagcccg tactcattcg ccgccatgcg tggtgcaata gctgcgacaa
    22801 gttctgtcgg attattacta acccattttg cagcataggc tgtagaaggt gtaacttcac
    22861 gctctactcc atataattct gcttgaagaa atgtatgaca ctgggcaagt gcttgtgggt
    22921 gggacattac tttttgcact gatttccaag cggatacgtg tgctggatga accattaaat
    22981 gttgcgcaat cgggagaaca atctccgcta ctacagggac acttgaaaaa tgaaataagt
    23041 agtccagcgt gatattgacg cttccttcaa tcgtattttc aattggaaca acagccacat
    23101 ccacgtcttc cttttcaatt gccataatac aatctggaat cgtactctta gctatcatct
    23161 cttcttttgg aaaagccttt gctgctgccg cgtgtgtaaa agatgctgct gggcctaaat
    23221 aagcaatttt cattttcaac tctcctttta tcgtagctag gaaaaaagcg tgcgccaact
    23281 aattggcgca gcactttatt taatccataa attcaaattc ataatcaagc aggcgaacga
    23341 tatcgccgtc tttagcacca cgttttctaa gcgcctcatc gacacccatt gcacgaagct
    23401 gacgagcaaa acgactaata gatgcatcgc gctcgaagtt tgtcatcgtg aataagcgtt
    23461 caatttttgc accacttagt acaaaagtac cgtctggctc tctagagatc tcgaagtcag
    23521 gttcttcagc aacatatttg taaagaactg tatcttcgtc ttcttgttcc aaaatttcat
    23581 taagtggaaa ttctggagtt gtttctaatt tatccgcaat agcaagaagt aattcgcgaa
    23641 gtcccgtttt tgttaccgca gaaattggga ataccggaat atcttcagca atttttgttt
    23701 taaattcgtt taaattttct tctgcatctg gcatatccat tttattagct acaataattt
    23761 gtggacgttc cattaggcgc aagttgtact gttcaagttc attattgata gccatatagt
    23821 cttcgtatgg aacgcgtcct tctgagcccg acatatcaat gacatgcacg ataacacgtg
    23881 ttctttcgat atgacgtaag aattgatgcc ctaaaccaac accttgacta gcgccttcaa
    23941 ttagacccgg taaatcggcc ataacaaagc tacgaccatc tcctgcgtca accattccta
    24001 agtttggaac aatcgtcgta aagtgatacg cagcgatttt tggtctcgca gcagaaacaa
    24061 cagataatag ggttgattta ccgacacttg ggaaaccaac taaaccaaca tctgctaaca
    24121 ctttaagttc taattgcaca tttcgttcct gtccaggttc tccgttttca gaaagttctg
    24181 gagccggatt tgctggtgtt gcaaagcgtt tgttaccacg tccgccacgt ccagcttttg
    24241 caataactgc gcgttgacca tgtgcgacta aatcagcaat aatctcaccc gtatcaatat
    24301 cttttacaat ggttccttgt ggtactttga caactaaatc ttctgcgccg cgtccatgca
    24361 tacttttact catgccatgt tcgccgtgct ctgctttaaa gattcgttta aagcggaaat
    24421 caaccaatgt acgcagacct tcatctacta caaatacaac gtctgctcct ttaccaccgt
    24481 caccgccagc aggaccaccg tttggtacaa atttttcgcg acggaatgct accataccgt
    24541 ccccaccatt accagctttt acatatatct taacctgatc tacaaacata atttttatat
    24601 tctcccgttc cttaaaagtc ttatctttca ttataacgaa taaactatac atctgtcact
    24661 atatttattt ctatttccaa atatttattt gttttacata acaaaaaagc gccaaatgct
    24721 tttacacatt tggcgcatct taaaatttta tttaaaggct tgtgcagctt tgacagcttt
    24781 atgccaacct tcatataaat cttctctttg ttcatctttc atttctactt caaaacgttt
    24841 gtctagtttc caatgttttt taatttcgtt tttgtctttc caaacgccta ccgcaagtcc
    24901 agctaagaat gccgcaccta gaacggttgt ttctttgttt tctggacgtt ctaccggaac
    24961 gcctagaata tcggattgga attgcattaa gaagttatta gcagaagccc cgccatccac
    25021 acgtaacgtt tttaagctaa taccagaatc ttgttccatt gcataaagca cgtctcttgt
    25081 ttgataagca agagattcca atgtcgcacg gataaattgt tctttttcgg taccacgagt
    25141 taatccaaaa acagcaccac gaacatcgga atcccagtaa ggtgcgccta aaccaacgaa
    25201 tgctggtaca acatatacac catcactaga ttcaatccgg ctcgcatagt tttcagaatc
    25261 gcttgattga cgaaccattc gtaacccgtc acgtaaccac tgaatagccg aaccagcaac
    25321 gaatatacta ccttcaagtg catattctac ttttccatca attccccaag ctagtgttgt
    25381 taataagccg ttttcagaac ggactgcttt ttccccagtg ttcattagta agaaacaacc
    25441 agttccataa gtatttttcg ccatcccttt ttcaaaacaa ccttgtccga ataaagcggc
    25501 ttgttggtca ccagcaatac ctgcaaccgg cacttcttca ccaaagaagt gataaggcac
    25561 tgtgtccgca tacacttcag aggaaggacg aacttcaggt aacattgctt ttgggatatt
    25621 aagcattttt agaagttcat catcccactc taaatcgtaa atattataaa gaagtgtccg
    25681 agaagcattg gaataatctg taatatgagc acgaccacca gttaatttcc aaactaacca
    25741 agtatcgatt gttccgaaaa gaagttctcc tttttcagca cgttcttgcg caccatctac
    25801 atggtcgaga atccagcgag cttttgtacc cgcaaaatac ggatcaatca aaagaccagt
    25861 tttagaacga atggtatctt catagccgtc tttacgtaat tgtttacaaa tatcttctgt
    25921 ttgacgagat tgccaaacaa tcgcattata aattggattt ccgctttctt tatcccaaat
    25981 aacagtagtt tcacgttggt ttgtaatacc aatcccagca atttctttag aagaaatatt
    26041 tgttttgagt aatacgcctg caataacagc taaaatcgaa gcccagattt cattggcatt
    26101 atgttcaacc caacctggtt taggaaaaat ttgatcaaat tcttcttgtg caacgccaat
    26161 tacttctcct tcttcgtcaa taatcatcgc tcttgaactc gttgttcctt gatccagtgc
    26221 taaaatatat ttcttttcca tgtaaaattc ctcctctagt tttaagtaca acgaaagccc
    26281 gaagaccttc gcttggagct agttattatt ctagcttatg ctaaatcttt tttcttgtcg
    26341 agttgcatcg ttaaaataag aattaaaaca aataatactg cgaacaccca gaaccacatt
    26401 cctagttctc cgttaataat ggcattatac cctaaagcac ctaatgcacc gcccatgatt
    26461 ggtccaataa ctggaaccca tgagtaaccc caatcagatc cacctttgcc agaaatcggc
    26521 caaacaaaat gcgcaattct cggtccaagg tcacgagctg ggttgatggc ataaccagta
    26581 gttccaccaa gagacatccc gatagctacg attaatgcgc cgacaacaag tggatttaat
    26641 ccatctgaaa aagaatttgc acctagtgat agtaatccaa atactaaaat aaaagtacct
    26701 aatgcttcac caaaaaagtt agatgtaaaa tggcgaatag ctggcgccgt tgcaaaaaca
    26761 cctagttttg ttggtttgtc ttctgtttgt ttccagtgag gatagtaatg taaccatatt
    26821 agcgttgccc caataaatgc tccgataaac tgagcaagaa tatatggcaa tacgtaattc
    26881 cacgggaaag cacctgcaag cgccatacca atagttacag cagggttaag atgggccata
    26941 ctcatatatc ccgaaacata tacacccatt gtaacaccta gcccccaagc taaagtaata
    27001 acgacccagc cgccattctc cgctttagat cttttcagtg aaacacctgc tacgacacca
    27061 gcacctaaaa taattaggat agccgtacca ataacttcac ctagaaattg tgttgctaaa
    27121 cttgtgtcaa tcatcttttc caactccttc ttcttgctta tttgtatcac cggaatttta
    27181 acacttacta gtccccttac attccgatta tcaattaact tcaaaaaaag aatgacaatc
    27241 aaaacgtagg cacactagta cccttgcatc gtttcgattg tcatctcttc tcctgacatt
    27301 ttaattaact tgagtctatt taatcatatc aagaaaacgc tgtcaatcaa acgacttgtc
    27361 ctatttttca caatgtctct tcatctgcct ctttacattt accccaattc acgagagtta
    27421 taaccctttt taaaagaaat taattcacaa agatgaaaac acaaaaaaac cgccacaagt
    27481 gacggtttta aatttgtatt taagcttctt gtacttcagg ataaacgcta acttttttct
    27541 tgtcgcgtcc catacgttcg aaacgtacaa cgccgtcagt tttagcgaat aaagtatcat
    27601 cgccgccacg tcctacgtta gttcctggat agattttagt accacgttga cggtaaagga
    27661 tagatccacc agtaacaaat tgtccgtccg cacgttttgc acctaaacgt tttgattcag
    27721 agtcacgtcc gttagaagtc gaaccgccac cctttttgtg cgcaaaatgt tgaatatcaa
    27781 attttaacat gaaattccac ctcctatttg gagttaattt ttatatgatc aggatagctg
    27841 tacgctaatg accttagttg attttccatc cctgtaagca agatttgcac cacgtcatct
    27901 ccgacataat cagcaggcac agaatagtaa aggtaaccct ccgactcttc tattacaggc
    27961 tcaaaatcac gtacttccga aatagcattc accattccaa aagcaataga ggatgctcct
    28021 gcacatacca aatcactgcc atgttcggca aaatcggcgt gtccactcat tgtaaaagaa
    28081 attatttggt tgtcttctcg cataacatcg acttgaatca ttgttttcgt cctttcaaat
    28141 taagcattga tagcatcaat agttaatttt gtgtaaggtt gacgatgacc ttgttttttg
    28201 tggtagttct ttttcggttt atatttataa actgtcaatt tcttcgcacg gccttgtttt
    28261 tcaactttag ctgttacagt tgcgccttcc acgaatggaa cgccaacttt agcggaatct
    28321 ccacctacga atagaacttt gtcaaaagta acaacatcac caacttcacc tgctaatttc
    28381 tcaacataga tctcttggcc tgcttctact ttgatttgtt tcccacctgt ttcaataatt
    28441 gcgtacatac ttgcacctcc tcatatacta agactcgcca tcacagggga tttacacgaa
    28501 gtaaacactt gacccagctc tgtgcggttg tagcttggtg cgctacaaac ataacagtaa
    28561 aatgatagca taagcaagca gcctatgtca accaattgtt gattttagtt ttccacccgg
    28621 ccaatttgat aaaacgggac tctttcatcc gccacttccc aatcaattgg cgcattactt
    28681 agcgtattca aatctaaaaa agtatctaaa acatcttctg tcgtaataat ttggatattg
    28741 cttggctcat tttgcataat ccctgaaagc tctcgttcta attcgaaagc aagcgtctct
    28801 ttggaagcca catggcccgt cgcataacaa actggacaag gcatcgttgt cgtttctaaa
    28861 aaggattgct gttttttgcg tctcgtcagt tgtaatagcc ctgactgcga taaagcagca
    28921 acttgtgttg taatatattc ttcgcgagtt ttgatctcta acgcttcata aagcgctgtg
    28981 tagcccaatt ctgacattcc tccaataaaa tccactaata tcatcccact catattacgt
    29041 aacctaattt gtcgaaggat ttcaggaact gctttgagat ttactgattc tactgttttt
    29101 tcttttgctg tggtaccttt aaatttacct gagtttacat caacaaccca catcgcttct
    29161 gttttttcaa taaataaaga agaaccatta cttaaatgaa ccactggtcg tgcgagccta
    29221 tctatttgag ctttgatacc taggtccgca aataaatcag cgcttttctt tatgatgatt
    29281 tgcttatccg gccatagcat ttctagcatt ttagcaaact caaaatcatc cgtaattact
    29341 tctgatggtg cgtatcgttg aatgaactgt ttcgtactat ttaaaattcc cgaagccact
    29401 gataatagta agccaggttt tttccgcttg ctagcttctt ttaataatgt ttgatgttta
    29461 tctctcgctt gaaccaaggc ttgttgcaat tgctctttcg tcgcaaattc tgcattagat
    29521 cgaataatta ccgcttcatt ttcttccacc atggtttccg ttattttctt taatctgatt
    29581 ttgtctccta ttcttttaga aatagaaata tattcttttc catacaaata aataagcaag
    29641 tcaccagaaa attccagtat accagttaat aacggaagtt tcgtcgcgct gccttcccgc
    29701 acaatttgaa ctggaatttt agcaccttgc gttttatcat agctttccgg aatatctttt
    29761 aaatggatga aacctttgtt attattacct aaatcaacaa aagctgcttc cacttttcga
    29821 tcgatttttt gaataaatcc ataataaata tcaccaactt gaactttttc agaaggtcgt
    29881 acaatttcaa tatctattaa caaatcatct tccattgctg ctattcgttt ttctatagga
    29941 gccgcactta ctactagctt tttcatacaa tcacctttta taaagaccct tcatcttaaa
    30001 gataaagggt ctaatttttt atttcccgct aaaaagttgc tttaagcgag cgaaaaatcc
    30061 cgcttttttt gtttcaatcg acattaaagg gatagattct ccaagaatac gtcgagcaat
    30121 attacgataa ccttgtgaag cacggttatt tggtaacata gcgacaggat ccccactgtt
    30181 cgaagagcga ataacttcat catcatcaat gataatacca agtaattcaa ttgataaatg
    30241 tgtggtaatt tcatcaatat ccattacatc accattcatc atcatttgtg tacgaatacg
    30301 gttaataatt aattttggtg gctcaatatc ttctttttcc agtaaaccga taattctatc
    30361 tgcatcacga actgctgata tttctggcgt tgtaactaca attgctttgt ctgcaccagc
    30421 aacggcattt ttatagccag tttcaattcc tgcaggacaa tcaattaaaa taaaatcata
    30481 gtctgggcgg agttgattaa ttaaatccac catttgttca cccgaaacag catttttatc
    30541 agtagtttgc gccgctggaa gcaagaaaag taaatcatca aaacgtttat ctttaatcat
    30601 tgcttgatga attttacagc gaccttctac cacatctact aaatcataaa taattcgatt
    30661 ttcaagacct aaaacaacat ctaaattgcg aaggccgata tccatatcaa tcaagcacac
    30721 tttcttacct tgaagagcaa gtgccgttcc caagttagca gttgaagtag tttttcctac
    30781 tccacctttc ccagaagtaa tgactatagc ttctcccatg tttaacgccc tccttgaaaa
    30841 ttagaaattt caggtctaat ttttcttatc ttatgtattc catcaattac tatctcacct
    30901 gcatcattta caaatgcaga aaacaaatct gtttcagtga cctctttata atcctcacta
    30961 tcaaatccgt ataccttatc ggcaattcta acttgtgagg gataaagaaa ttttcctgct
    31021 acaatagcat ttccgttgcc ttcaaagcca gcatgaataa ttcctttaat attccctaga
    31081 acaaatacat tgccatttga acggatttgt cccccaggat taacatcgcc aatcagcaaa
    31141 aaatcccctg gaacctgaac aacttgtcca gaacgaataa tcgttgccat agaaaaaatt
    31201 tgatcatttt ctttccattt tttggcctcg tctttagaca tcacattact ataaaatgca
    31261 ctaattttca tttggctatt ctcatgaata atagttgata tttcacgttc ttcttcctct
    31321 gaaaacagac ggttaccaat ttgaacttgc acctctaatt tttcaccaga gtatgggttt
    31381 tgtttctgat ctgcaagcaa ttgagttagt tcttgttgca attcagatat actcgcttta
    31441 tcactaagaa aaatactaat gccatctttt gtgcctttaa tttgaacatt cttcttcata
    31501 taccatttca ccccgcaaca tttatactct agcctttagt atacactaac tcaaattaaa
    31561 tgataataaa aaaatacttt ttttgaaaaa acagcttgaa atcgcaaact gtggatattc
    31621 tccacagtca tactttttca agtaatagcg acttcaaact gttaaaatta cgatagttat
    31681 tctgatttaa ccaaacgatc aagaaacaat cggaatggga aaaagacaac taaaaagaat
    31741 gctaaattaa tcaaaatggt tgtccataaa cgctgatcaa taaaaactgg gatagacatg
    31801 gttgtcgtac caatcaaata ataaaacgca tatactaaac tttctgtaag aataatatta
    31861 aatatcgcaa ttaacccaac caaaagtata ttattttgca acactttcat aaatttatct
    31921 gtgatataca ctgtaaacgg gaagatagca aaataaatgc ccatcacgcc agtataataa
    31981 atatcaaaca gcaagcctag aataaaagca tatgctaaag tcgtatttcg tttataaaaa
    32041 caagtcataa tcgtcaacat aataagtaaa aaatgtggaa taaaaagatg tctatcatta
    32101 aacagaccat tcgcaaactg aagactaaaa acaccctcaa gaataaaggt tccaaccatg
    32161 attgcaggaa gtgcaatgtt tttcttaacg ttcatgatta ttgtcctcca gtcgtgtctg
    32221 aactagttgt atcgtcatcc gttgtccctg cttccgctga acgcttcaac acagtaacat
    32281 gatttagatc atacatgtca gcacctggct taataaacgc ggtttgagat aatcccattt
    32341 tatcagtttc tactttttca attgtaccga taaagatacc tgctgggaat tttccaccga
    32401 gtccagaagt aacaactttc tgtccttttt taaatttcat gtcatacggt aattgtttta
    32461 attctaataa cttagtatca ctgtcataac cattgataat cccgaatgca ttttccttgc
    32521 cctgcacttt agcagaaaca cggtttttaa catccgacga agttaataat tcaaccgtag
    32581 ctgatttagc gcctgtcgtt gttactttac caataagacc acttggtgtt gtaactgcca
    32641 tatccggttt tactccatca cttgaacctt tgtcgatttc tacttgatca ttccaattag
    32701 taggatttct agaaataaca gaagcattaa gtggatcgta gtcacgaata ctatccgtaa
    32761 tatcaagact ttcttttaaa tctttatttt ctttttttaa gtctgcaact tcactttcaa
    32821 gttgtgccaa ttcttctaaa cgttctttta gatgttggtt ttcagtataa gtgtttttta
    32881 aatcaaccac tccatcaact gcacctgaga taaatgaagt aggcttagct actatatttt
    32941 cgccaaatcc aacaacatct ttcacaaatt gttctggcca cgaagcattc tcacgatcac
    33001 gtaaagaaaa accaactagc gcgacgagaa caataataga tattaacaag ataatcaaac
    33061 gtttattgag aaaaaattgt ggcataacga cacctcatct cgttagtact ctttttccat
    33121 ttttttgaag ctaattcatc ttgttatatg acataaatga gcgtgtccat ttagttcatt
    33181 tttttgcgtt tatacatatc catattttcc aaagctttcc ctgttccaat tgcaacacaa
    33241 tcaagtggtt catctgcaat aataacaggc atttttgttt cttcggaaat aactgtatct
    33301 aaattacgta aaagagctcc cccacctgtg agtacaatac ctttatccat aatatcagct
    33361 gacaattctg gtggtgtatt ttcaagtgtt ccttttacag catcaataat cgctgctact
    33421 gtatcagcaa gtgctccgct aatttcttct ggagtaattt caatagtttt aggaagtcca
    33481 gttactaaat cacgtcctcg aatgctaaat ggagataagt ccaaaccatt tggactagct
    33541 gagccaattt ccattttgat tgcttcggca gtacgatcac caattaatag attatatttt
    33601 ttacgaatgt aattaatgat aacttcatct aaatcatcac cagcagttct tacagagcga
    33661 ctggttacaa taccacctag agaaataaca gcaacttctg tagttcctcc accaatatct
    33721 acaaccatgc tacctgtagg ctcgccaact ggaagcccag caccaatagc cgcagcaaat
    33781 ggctcttcaa ttgtaaatgc atctttagct cctgcttgac gagtcgcatc aataacagca
    33841 cgtttttcta cacctgtaat tccagaaggt acacatatca ttacgcgtgg tttacttgca
    33901 ttaacacttt taccagcttt ttgtatgtaa tacttcatca ttgctgcagt tgtatcataa
    33961 tcagcaataa caccatcttt cattggacga attgcaacga tatttcctgg tgttctacca
    34021 atcatatttt ttgcatcgct accaactgca actatttctt gagtgtcttt tttcattgct
    34081 acaacggaag gttcacgaag gacaatacct tttcccttca tatagacaag tgtgttcgct
    34141 gttcctaaat caattccaat atctttatta ccaaatccaa acatctgtat tctccttttc
    34201 cttcgtaata ttctacagga tacattaagt ttccttattc gtccattaaa ttaatgttac
    34261 cttatccctt tgtgtcaatg tttctgttta gacacataaa caaccatctt attataacat
    34321 aagtaagact atgagacatt aatttttcat gagaaggaaa aaattttaac ttttctttaa
    34381 aaacattttt tgagcgttac taaatttact aagaatatac ttttgaaagg ataaattttc
    34441 acttaaaaaa ttcaatcaga caaagaaaaa ctggaatggc aaacatacc
//
LOCUS       DASEAA010000009        33171 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.009, whole genome shotgun sequence.
ACCESSION   DASEAA010000009 DASEAA010000000
VERSION     DASEAA010000009.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 33171)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 33171)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..33171
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.009"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(244..957)
                     /locus_tag="U0342_000376"
     CDS             complement(244..957)
                     /locus_tag="U0342_000376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2421740.1"
                     /translation="MVKYELIAADIREKINNGTYPPESILPDQVSLCKAYDCSRMTIK
                     KAFDVLALEGLVYRQRGAGTFVMKNALANKQDASLRDYDGLTKMMGDNRISSKIIAFD
                     IAFPDEKTQEQLLIKADQPVYKLIRLRLLDGAPYVLEHTTMPADLVPGLTKEILHHSI
                     YAYLQDSLGLVLSGAFRKINADKPSEYDQEYLACGEHDPVLEVEQVVYLKDGRPVEYS
                     RSRHRYDTRSFIMVDHREK"
     gene            complement(1038..2324)
                     /gene="celB"
                     /locus_tag="U0342_000377"
     CDS             complement(1038..2324)
                     /gene="celB"
                     /locus_tag="U0342_000377"
                     /EC_number="2.7.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464427.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS cellobiose transporter subunit IIC"
                     /protein_id="HEM2421741.1"
                     /translation="MNKFMELLGEKLMPLAAKLGENRYLTTLRDAFMLAFPLTMFGSI
                     AVVLMNLPFWSDETKAVLQLYLGNAQSATMSIMTVFVVFGIGYSLSKYYKVEAIYGGA
                     VALASFLILTPFFFNSPDGELITGALSLDRLGAKGMFIGMITGFIAAELYRFFVQRDW
                     TIKMPAGVPPAVAKSFAALIPAILTLSIFLAINVMVQFFFHTNLHDVVYTVIQKPLVG
                     LGSGIVPTLIALFFVQVLWFFGLHGQIIVNSVMDPIWNTLMLENLDAYKAGLPLPHII
                     TKPFMEVFTVGMGGSGMTLAVVIALAFLMKSKQSKEIGRLALGPGIFNVNEPVLFGMP
                     IVLNATILIPWIIAPLIVTTLNYFVMAAGIVPAPTGVAVPWTVPIVINGILATNSWLG
                     GALQVVDFFIVLIIWYPFLKLVDRTNIARESEAAIK"
     gene            complement(2469..2861)
                     /locus_tag="U0342_000378"
     CDS             complement(2469..2861)
                     /locus_tag="U0342_000378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464426.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chaperone"
                     /protein_id="HEM2421742.1"
                     /translation="MDNKLEFTTIDEYITQAPPETKEVLQKIRETIKAAAPEATEKIS
                     YQMPTFYLEGNLVHFAVAKNHYGFYPASSGIAAFESKLGNYKHSKGAVQFPIKEEVPY
                     ELIKEMTLFRLAENKQKAAEKLAKKKKK"
     gene            complement(2916..3401)
                     /locus_tag="U0342_000379"
     CDS             complement(2916..3401)
                     /locus_tag="U0342_000379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEM2421743.1"
                     /translation="MEPINHFFEWAKNNNWQVDLSAVEKNLPEQILKRYGKLPDAYKA
                     FYRQLNLCSNVGDTCWFLLEEDFLENEDDAFSWNSFEQMSLEAAEGDTNLENEVKLFW
                     NAHLPIMMSVGGCYEYYAITLNDGNIVHGSEPEFEESSIVADSFADFLLKIVAGEIVI
                     S"
     gene            complement(3417..3857)
                     /locus_tag="U0342_000380"
     CDS             complement(3417..3857)
                     /locus_tag="U0342_000380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADAR family protein"
                     /protein_id="HEM2421744.1"
                     /translation="MKVIHFYSENADYGCFSNFSLHPIVIDGVTYPTTEHYFQAQKFI
                     DKKIIKKVINTKKPIDAAKLGRNRDFPLRKGWESMKDEVMLKAIRAKVAQHSEVKEML
                     LTTENAILVEHTENDHYWGDGGDGSGKNRLGKILMKVRDEWNSK"
     gene            complement(4010..4097)
                     /locus_tag="U0342_000381"
     tRNA            complement(4010..4097)
                     /locus_tag="U0342_000381"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4061..4063),aa:Ser,seq:gct)
     gene            complement(4101..4173)
                     /locus_tag="U0342_000382"
     tRNA            complement(4101..4173)
                     /locus_tag="U0342_000382"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(4138..4140),aa:Asn,seq:gtt)
     gene            complement(4226..4693)
                     /locus_tag="U0342_000383"
     CDS             complement(4226..4693)
                     /locus_tag="U0342_000383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SprT family protein"
                     /protein_id="HEM2421745.1"
                     /translation="MNQAELQRHMEEVSLQFFQKEFRHQAVFNARLRTTGGRYLLKSH
                     HIEMNPKYLENFGLAYFIGIMKHELCHYHLHLEKKGYQHRDQDFRELLKKVDAPRFCA
                     TIPREITMHEYTCKSCGKSFLRQRRFNVNRYRCGSCGGKLIQTGSKKIYTENA"
     gene            complement(4693..6870)
                     /locus_tag="U0342_000384"
     CDS             complement(4693..6870)
                     /locus_tag="U0342_000384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464424.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding transcriptional accessory protein"
                     /protein_id="HEM2421746.1"
                     /translation="MEQMQDKIIKLVQKSLTYKPAQINAVIKLMEEGNTVPFIARYRK
                     EMTGSLDEVEIRDIEETFEYVTKLENRKEEIIRLIDEQGKLTDELRAAITKAEKHQAL
                     EDLYRPYKQKKRTKATIAKEKGLEPLADWLMSFPSNADPLKEAANYISEEKEVESAEA
                     ALLGAHEIIAEQISDEPSFREWIRNFTRKFGMIESRAKNAEVDEKGVYEMYYEFNEMI
                     GKVASHRILAFNRGEKEDILRVQVQVDTTKIFQYLFEKVIQNRNSATRPYVEEAIMDA
                     YKRFIGPAIEREIRGELTEKGEEQAIHIFSENLRKLLLQPPLKGKIILGVDPAFRTGC
                     KFSVLDQTGKVLEIGVVYPHTAKARRPEAKQKIAEILSTYKVEVIAIGNGTASRETEQ
                     FIVEVIRESKSNAYYCIVNEAGASVYSASETAREEFPDYQVEERSAVSIGRRLQDPLA
                     ELVKIDPKSVGVGQYQHDVAQKRLNETLTFVVETAVNQVGVNVNTASASLLQYVAGLN
                     KTVANNIRKYREENGSFASRKELKKVPRLGAKSYEQSIGFLRILEGENPLDKTAIHPE
                     SYKAAEQIVKAAGFGLKDIGSEDLKAALQALSIPEEAEKLSIGKETMRDIIDNLIAPG
                     RDLRDELPAPLLKQDVISMEDLKQGMELQGTVRNVVDFGAFVDIGVKQDGLVHISKLS
                     NSFVKNPMDVVSVGDVVTVWVDEVDTKKNRIALTMLNPNGSVK"
     gene            complement(6941..8572)
                     /locus_tag="U0342_000385"
     CDS             complement(6941..8572)
                     /locus_tag="U0342_000385"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEM2421747.1"
                     /translation="MKKVWLNSVKDYTWARFRKDLLAGIIVGIIALPLAMSFAIASGV
                     SPEYGIYSSFVAGIIVSIFGGSKFQIAGPTGAFIPVLLGIVLTYGYQDLLVAGMMAGV
                     LLCLMGIFKIGTLIKFIPRPVTIGFTAGIAVTIFMGQVGNFLGLTGMEKHESFVANMN
                     EIWLHLDSWNFYSVFISCICMLVLFIFPKILPRIPAPLIGLVITTAIAMLFFPDALPT
                     IGSAYGDIPSTFPPFEFPDMTFANMSKLIGPAFVIAMLGGIESLLSAVVADGMTNTKH
                     NSNRELIGQGIANIVTPMFGGIPATGAIARTATNINNGATSRVSGVIHGIFVLLTLLV
                     LAPVAVNIPIAAMAPILMLVAWNMSERKTFQHIIKLKSGDTLVLIITFLLTVFASLTV
                     AVEVGLLLAVVLFAKQMGSSMQIEEIEPEGAEIAPHLHEKISIFTIRGPLFFGAAQIF
                     QQNIIKAIHVKPKYLILRMGKVPIIDATAEGYFHQIEKEFSKQGGQILITGLTDKAKE
                     SLKGSGLYDRIGEEHFFSHTEDAIHYAENALNKGD"
     gene            complement(8777..9376)
                     /locus_tag="U0342_000386"
     CDS             complement(8777..9376)
                     /locus_tag="U0342_000386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464422.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SpoIIE family protein phosphatase"
                     /protein_id="HEM2421748.1"
                     /translation="MNKAVESNNLFVFQRSKALQQYCGDVYYTHEDENGFLYVLSDGL
                     GSGLEANRAAKATVDAIKEDIHADITDMLEKANQAVSGLRGAAIAIIKGDYLTKTLYY
                     TGMGNIRFYMIGMEDKLIFPLSGSGFLSGRKQKYRLQSFKYKPGSKFLMHSDGLVLSR
                     VRKSLESPLCVVKIGHLIERNILDIPTDDVTFMVGKFPE"
     gene            complement(9377..10156)
                     /gene="sigB"
                     /locus_tag="U0342_000387"
     CDS             complement(9377..10156)
                     /gene="sigB"
                     /locus_tag="U0342_000387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464421.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor SigB"
                     /protein_id="HEM2421749.1"
                     /translation="MPKVSQPDKEAKEKVYIWIAAYQENGDQDAQYNLVVHYKNLVES
                     IARKYSQGKSFHEDLVQVGNIGLLGAIRRYDATFGKSFEAFAVPTIVGEIKRFLRDKT
                     WSVHVPRRIKELGPKIKNAVEELTRELQSSPQISDIADFIGVTEEEVLEAMEMGKSYQ
                     ALSVDHSIEADSDGSTITLLDVVGGTDDGFERVNQRMLLEKVLPVLDEREQKILQFTF
                     IENRSQKETGELLDISQMHVSRIQRQAIKKLREALQNEEVE"
     gene            complement(10134..10607)
                     /gene="rsbW"
                     /locus_tag="U0342_000388"
     CDS             complement(10134..10607)
                     /gene="rsbW"
                     /locus_tag="U0342_000388"
                     /EC_number="2.7.11.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma B factor RsbW"
                     /protein_id="HEM2421750.1"
                     /translation="MATMHDKITLQLPAKPEYVSLGRLSLSGIASRAGFSYEAIEDLK
                     IAVSEAITNSVKHAFKGEDDGEITVEYLIYEDKLEVRVSDNGTSFDLETRKQEIGPYE
                     VGEDAEMMRIGGLGLFLIETLMDDVKLYYDEGVSVVMTKYINEKQVEENAKSIST"
     gene            complement(10591..10935)
                     /gene="rsbV"
                     /locus_tag="U0342_000389"
     CDS             complement(10591..10935)
                     /gene="rsbV"
                     /locus_tag="U0342_000389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464419.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti sigma b factor antagonist RsbV"
                     /protein_id="HEM2421751.1"
                     /translation="MNISIEIKERDTDHIDIFVAGEIDAYTAPKVKEALEVYQVKEGI
                     VLRIDLTEVSYMDSTGLGVFVGAFKSLRQRQSELVLFGLSDRLFRLFEITGLSDIIEI
                     KNVEGEMNGNNA"
     gene            complement(11085..12089)
                     /locus_tag="U0342_000390"
     CDS             complement(11085..12089)
                     /locus_tag="U0342_000390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464418.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PP2C family protein-serine/threonine
                     phosphatase"
                     /protein_id="HEM2421752.1"
                     /translation="MEKAFEGKYRDILIQYLEHQDEEILYTCEKLSREAMEERVSPEE
                     IVHLHRSVLELYGKELPDFVRLSFDVLLEIMVGYGLAYMEHLSLRTEQKELRSEIAQA
                     EDMQKTLMKTEVPEHDELDFGVISVAARQMSGDYYSFTEEGDKQIGIALADVIGKGIP
                     AAFSISMIKYALAGMTGDDRKPSIVLESLNQVAEENINDNMFITMFYGLYHEDTHLFE
                     YGSAGHELGLYYQHKENSFSDLYAKGLPLGVDKNAVYRQFDKKIEVGDAIFIMSDGVT
                     ETRTANGFLEREELTEIIAAHISLSAEKMVHAIYDQLVKMQNFELHDDFTLICIKRTK
                     "
     gene            complement(12106..12516)
                     /locus_tag="U0342_000391"
     CDS             complement(12106..12516)
                     /locus_tag="U0342_000391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464417.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anti-sigma regulatory factor"
                     /protein_id="HEM2421753.1"
                     /translation="MTFQSCVKIINEWDIVAARQLGRKISKEIGFGTVDQARITTAIS
                     ELARNIFLYAGRGEICIEKVNESGKQGMIIVAKDKGPGIVDIRKVMQDGYTTSGGLGA
                     GLPGVKRLMDSFDIESSIEGDSKGTVITTTKWVR"
     gene            complement(12519..12875)
                     /locus_tag="U0342_000392"
     CDS             complement(12519..12875)
                     /locus_tag="U0342_000392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014096810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2421754.1"
                     /translation="MGIPILKLGECLLISIQSELDDHTAVEFQEDLLAKIHETSARGV
                     VIDITSIDFIDSFIAKILGDVVSMSKLMGAKVVVTGIQPAVAITLIELGITFSGVLSA
                     MDLESGLEKLKQELGE"
     gene            complement(12881..13717)
                     /locus_tag="U0342_000393"
     CDS             complement(12881..13717)
                     /locus_tag="U0342_000393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464415.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2421755.1"
                     /translation="MYKDFANFIRTNKADLLNNWMNEMEKQSDQLINDIAKEAMYEET
                     SKEFVDLIVSNVTENGSKFNEKLDDFAEKVVHLGWPIHFVTTGLRVFGLLVYTAMRDE
                     DLFLKREEKPEDDAYYRFETWLSSMYNKVVTAYADTWEKTVSIQKSALQELSAPLLPI
                     FEKISVMPLIGTIDTERAKLIIENLLIGVVKNRSEVVLIDITGVPVVDTMVAHHIIQA
                     SEAVRLVGCQAMLVGIRPEIAQTIVNLGIELDQIITTNTMKKGMERALALTNREIVEK
                     EG"
     gene            complement(13968..14315)
                     /locus_tag="U0342_000394"
     CDS             complement(13968..14315)
                     /locus_tag="U0342_000394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464414.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system PemK/MazF family
                     toxin"
                     /protein_id="HEM2421756.1"
                     /translation="MMVKRGDVYYADLSPVVGSEQGGIRPVLIIQNDIGNRFSPTVIV
                     AAITAKIQKAKLPTHVEATRKDGFERDSVILLEQIRTIDKQRLTDKITHLDEDLMAKV
                     NKALEVSLGVVEF"
     gene            complement(14319..14597)
                     /locus_tag="U0342_000395"
     CDS             complement(14319..14597)
                     /locus_tag="U0342_000395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family ribbon-helix-helix protein"
                     /protein_id="HEM2421757.1"
                     /translation="MLEKEKRMIISVELTQEMIQELDVVVEKEKMGRSEVIMEATQQF
                     LQEKRARELRDEMERGYAEMATINFAIACECTHVEAEAEDRNISILGG"
     gene            complement(14803..15909)
                     /locus_tag="U0342_000396"
     CDS             complement(14803..15909)
                     /locus_tag="U0342_000396"
                     /EC_number="5.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine racemase"
                     /protein_id="HEM2421758.1"
                     /translation="MVTGWHRPTWIEIDRAAIRENIKNEQNKLPENVDLWAVVKANAY
                     GHGIIEVARTAKEAGAKGFCVAILDEALALREAGFQDDFILVLGATRKEDANLAAKNH
                     ISLTVFREDWLEELTLEAPLRIHLKVDSGMGRLGIRTTDEARRIETTIAKDNQLQLEG
                     IYTHFATADQLETSYFEQQLAKFQTILTSLKNRPTYVHTANSAASLLQPQIGFDAIRF
                     GISMYGLTPSTEIKTSLPFELKPALALYTEMVHVKELAPGDSVSYGATYTATEREWVA
                     TLPIGYADGLIRHYSGFHVLVDGELAPIIGRVCMDQTIIKLPREFQTGSKVTIIGTDH
                     GNTITADDAAHYLDTINYEVTCLLNERIPRKYIH"
     gene            complement(15928..16284)
                     /locus_tag="U0342_000397"
     CDS             complement(15928..16284)
                     /locus_tag="U0342_000397"
                     /EC_number="2.7.8.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464411.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holo-ACP synthase"
                     /protein_id="HEM2421759.1"
                     /translation="MIKGIGLDMIDLERVKQVVEKNPRFIERVLTEKEIKQFEKYEGN
                     RKIEFLAGRFAAKEAYAKANGTGFGKHLSFTDVEILQVEDGRPHVTLPVKSGENVFVS
                     ITHTARSAAAQVIIEI"
     gene            complement(16286..17665)
                     /locus_tag="U0342_000398"
     CDS             complement(16286..17665)
                     /locus_tag="U0342_000398"
                     /EC_number="1.3.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464410.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoporphyrinogen oxidase"
                     /protein_id="HEM2421760.1"
                     /translation="MKHIVIIGGGLSGLAAAYELQKTHPNYTWELVEKDKKLGGKFET
                     VKRDGFLIEKGPDSFLARKPAGVGLVKDLGLEDKLIANATGRSYIYHQKALHPIPEGS
                     VMGIPTDKEALLASTLVSEIGKARALQEPTMERNNQEQDQALGEFFEARFGKELVKTI
                     IEPLLSGIYAGDIYKMSLRATFPQFEQAVKKYGNLMDGLKESSMQTTGTKATIGAFRT
                     LEGGLDALPKAIAAALPKENLHTAKQATNITKKNSSYEISFVDGDKMEADGVIIAATH
                     DALIHLLAEKTTEPFAGQPLTTLATVSLAYNEQDVPILPDGTGYLVARTAPYKTTACT
                     WVQKKWPHMVPENKMLLRGFVGKAGETWLEQASDEAIVSAVLRDYAEMMDLHAAPLFY
                     EVSRMKSAMPQYLVNHQDRLKQLKKNIKADYPGVYFAGMSYEGVGIPDCIAGAQTAAK
                     ELVDYLEEV"
     gene            complement(17815..19290)
                     /locus_tag="U0342_000399"
     CDS             complement(17815..19290)
                     /locus_tag="U0342_000399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM2421761.1"
                     /translation="MFEERRLHPIALIKEIITNVRRNIVPIVVGLFSVFRAINSNGYL
                     PDWAVYLIIVIVILLILTPAVLKYITYKYTLEDQGIRIKYGLIFRKNTYIPYERIQTV
                     QKKQWFFFIPFNVCQILIETAGGNGKAEADLVAVPVGVVDELNDLRDGKKRDIQEAVP
                     ETEETTVEVAEAPEKTVMLQTKQLILMAVTSGGVFGTLLIVLAFMQQFREVIPTDWME
                     AQAEELWKMGIIVLIVLIVLILLVLWGISIVTTLFKYFQFKLMKYPNSLVVEKGLLER
                     NHTTISLSRIQGITIIESPLRQMLGLVAVKVTTAGNSGDEKLSGDILLLPIMKKALAL
                     KTLKEMLPDYLFEIEKMERAPKASLRRFLQIYLIWTIIPAAVASILFFPLGLISIILP
                     VLAGIKGVTSYRATGVFTDKHTLLVQSRPIFSKLTHIIRKERIQGLSLRQSIWMEKGG
                     SRHLNVWLKSGSTSAEAYVRYINQDLAIKVYNWYSPSKTIN"
     gene            complement(19283..19765)
                     /locus_tag="U0342_000400"
     CDS             complement(19283..19765)
                     /locus_tag="U0342_000400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM2421762.1"
                     /translation="MELDNLEKKLPEKIKTVWRQTEGIAVLTFLLCSVVAAIILYYAG
                     ASVWWSAIGFGLTVLYAAFIYLFIIPFRFARWSYQIKPDEMEIQHGIIFRSRVLIPMI
                     RIQHVETEQGPLLRRQKLVSLSITTAAKTHKIEAVNESESDELRHHILELVKVAKEDV
                     "
     gene            19898..20374
                     /locus_tag="U0342_000401"
     CDS             19898..20374
                     /locus_tag="U0342_000401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421763.1"
                     /translation="MKKKGYILLIIALLSLTLNWLPEIAHAQKEATGTTYTTATTNEL
                     MDMFLPHSIQNPYIETTKNSAELMFVTEEAATITTETNNQTQSIAGSTENHQFALANL
                     QPGNNLVTITATMTDGTSESKTITINLPEKPKKNSKSFHDHSKNQQVTHRKKGHLL"
     gene            complement(20420..21808)
                     /locus_tag="U0342_000402"
     CDS             complement(20420..21808)
                     /locus_tag="U0342_000402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464406.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2421764.1"
                     /translation="MKKRWLVFAIICLIITGFLSPKAEAATDYGSSFFTNVSLQNQNG
                     EQTTNFKENSKVRVAYDFVITQPVASGETMTLTIPNQLKLINYGGFPLMDSQGNTIAN
                     ATIDQATGTITLTFTDYVNTHTDLSGSLYYNATFNSKNIQTDQVNPIAFPVKNSTQTI
                     NAFISKVNTGGGTGSPTIVFKQGRMDDKDLSILHWTVTLNNALTPIDNAVYTDTLGSG
                     QNLLGSATIKYRDANKKVITTNIQPITLDADRNFELSIGTLNNQSVVITYDTKITTKQ
                     KSYTNKATLSGDNLEAVSRNATVNDYGSGGQGTGTPPAPPVKEEPPFIPAEKQLIEKT
                     VETDFGPLEIVKDSEQNGKIKVIYKVKDGDTLPGVANKFDVSVAEIKDWNNLTSDTLQ
                     AGQKLQLTIEKTLLSKITIPPVQKVTSTTSVDGVVKATGVLPHTGDSNPFIPFVTGVS
                     LVALGFTFGRRN"
     gene            complement(21926..22693)
                     /locus_tag="U0342_000403"
     CDS             complement(21926..22693)
                     /locus_tag="U0342_000403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464405.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2421765.1"
                     /translation="MNIKEKIAVQLYSVRKEMERDLEGTLRKMHEIGFRYVQLDGMRG
                     NDPSEVRRLLQKYELKVIGMHIKHDRFMNDLDGIIEEAYFFDCKTVFDKYIEEEDQTT
                     AGYTATKAALINAAEKLHPLGFRIGLHNPEYDFNECIHGRRVMDYITDPVDGICIYAE
                     PDTYWIRAAGHDETEFIKRYSGRAPIVHMKDFVSGFELEDMDNNLVEIGQGEVDFRAI
                     IEWGEANGVEYYCIEQDRSKRAMFETLEASYQYLLQL"
     gene            complement(22711..23664)
                     /locus_tag="U0342_000404"
     CDS             complement(22711..23664)
                     /locus_tag="U0342_000404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2421766.1"
                     /translation="MEKIIVNGRKNGQKIEIACSNLVMGAGDFLRADNMDFAGPVLDQ
                     YFEMGGNIFDTARHYRHSEKAIGAWMNMRGNRDSVIIQTKGGHPVREASDVPRVTPEA
                     IHEDISVSLDTLQTDHVELFALHRDNPDVEVGPIMEAMHKEVEDGRVYAIGLSNWELP
                     RIIEANEYAVSHGLTPLSFNSPNFSLAKVNRPRWENCVSASEEMIRWHEATNLPLFSW
                     SSQAGGFFSGRFSEEDTRDTEMVEVYYSEANWERYSRAKQLANQKGCTPIQISLAYVL
                     TQSFPTAAVIGPENATELQSSVAAAGIKLTASEVDWLDLKA"
     gene            complement(23664..24392)
                     /locus_tag="U0342_000405"
     CDS             complement(23664..24392)
                     /locus_tag="U0342_000405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464403.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2421767.1"
                     /translation="MKLIINESEQLVAQTVSQRIIELVKEKPASLICIAGGDTPLLTI
                     EALIKANQTGEVDFSETQFVGLDEWVGLGRETKGSCIQTLYDAFFDRLKNVSSEQICF
                     FDGKATSLTDECARVDKFIDDRGGMDFILLGIGLNGHIGFNEPFVPVDVNCHVVELDD
                     VTKRVMSKYFDTDLPLTHGISLGMQQILAAKEIYLVATGEKKIDIVKQVVEKEPTVAI
                     PATLVKDSNTTLVVDKIAASGVEA"
     gene            complement(24413..25738)
                     /locus_tag="U0342_000406"
     CDS             complement(24413..25738)
                     /locus_tag="U0342_000406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2421768.1"
                     /translation="MSSKNKQSFMNRFIAFMEKYFEPVAARIEKQRHISSIKNGMIAL
                     ISVLIIGSFSLIISAIGNMFPAGSVVKEFFVQNAAALNLPFQFTFGLLSIYAAITISY
                     SHAKQMKVPVLHSVMAAVMVTLILNTKMVDGVLNTEFLDSRGLFIAIFAALISVELIG
                     LFIRKNITIRIKGLPAGIATTFEAIIPLVVLLFSAVGLSILMQSVTSGQIIPEAFTTM
                     LAPAINSIDTPYAVFLICFLEMLFWFIGLNGYAILIGFVLPFMTQYLGANAAAYAAGE
                     PIPHVFAPNFWDYFMGFSGSGITGALVILALFSKSRELKAVGKVLVVPAIFTISEPVV
                     FGLPICFNPYLFIPFVLGTPILAVGQWFVFHFGWVRPPIANVGGTPIPLAQYLATMDW
                     RAIILIIFVLAAAVCMYYPFFKMYEKSLIKEEEVVSERQAAHDALDLDF"
     gene            complement(25758..26093)
                     /locus_tag="U0342_000407"
     CDS             complement(25758..26093)
                     /locus_tag="U0342_000407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464401.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2421769.1"
                     /translation="MEINQLHVLLVCNLGASTGVMVTKMKEIAQNSEKLTNTDVKIEA
                     HPAGELREHIEDFDVILVGPQIKHQLKHLSEIAAEYNKPIQVIDTKDYGTVNGANILK
                     DAIILKLNK"
     gene            complement(26094..26423)
                     /locus_tag="U0342_000408"
     CDS             complement(26094..26423)
                     /locus_tag="U0342_000408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464400.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2421770.1"
                     /translation="MDIEKISFSLISLAGDSFSKLIEALQAAKESDSELVEQLLKEAD
                     DLMIEAHKVQTEMLIQETRGEQANFSVLLVHAQDTLMNTILASTLIREMIEMHQEIKT
                     LRKEEEK"
     gene            complement(26438..28456)
                     /locus_tag="U0342_000409"
     CDS             complement(26438..28456)
                     /locus_tag="U0342_000409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2421771.1"
                     /translation="MKLNQQCIQILDFLMEQEDFKNIGYISNALGCSERSVRYSLEKI
                     DIFLHEQTLPALIRHTRKGVLLPEKNIVNPVVRKFKQQITPKKYRYSQEEVQQFLLLK
                     LLLSEEVLPVTYFEEVLFISRSSVLNHLRAIEGELFLNNLDLSHQPRHGFLVTGNLIT
                     KTSLFARSFLRFINIREFYQFLDSENSLSKKGELFFYNLFELEILQEVNREAHSVEEN
                     MTRAMDEQLYLTLIAILLKQHEAKPDFQFTADFMIKDELDQALATIIGSLKQYQYGRE
                     DEAVIEAFVTGICEKMGEIYQVDFVHGDTDFFTQIKAHIKLMIRRVRAGVTIENPIFN
                     EFMRDNREIFMRVKESLDALKPLLPISVSSQEISFLAIYFASEVQRNKQTVEMKPNLL
                     IICPEGVAVSKMIAIQLKRMFEFESIQTIGLRKFKRAMMADFDFVISTVDLPDMQDAK
                     VLRIHSYLQKEDMELLQKHLRMKLIKSDKQIINKFSKILAIIGENTQITNLSKLEFDL
                     LEALISDEGETPKRLIPPFQFTEEAIVMEETCPTWRQAIKLGTKCLEHLEVIEPSYHE
                     KIIHNLKAYGPYMVVAPGVVIAHAGASDGVLMDGIGVTIIEDGIMFFDRYEEPVHVIF
                     TLALKTKEAHLIVEQLMKLALDEEKMQKIKMASSKRDIYHYVKSAIFE"
     gene            complement(28664..29830)
                     /locus_tag="U0342_000410"
     CDS             complement(28664..29830)
                     /locus_tag="U0342_000410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464398.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2421772.1"
                     /translation="MDMKKVNPNLTLLALAISAFGIGSTEFISVGLLPLISSSMGVSI
                     STAGLTVSIYALGVMVGAPVLTTMTAKMNRKNLLLLVMLVFLIGNLVSAFAVSFGMLL
                     TGRVVAAFAHGVFMSIASVIAADVVHPSKRASAIAVMFTGLTVATVTGVPLGTFIGQL
                     FGWRMSFLFIVAIGVIAIIANFFLVPKNLSNGKSISFKAIGQLLVNKKIVMVLLMTAF
                     GYGGTFVVYTYLSPMFSGMGYSTSMIVILLIVYGVMVAIGNTIGGHFANERPAKALFV
                     MFSLQGITLLLLQFTSTNAIFGLMTIMLMGFFAFMNVSGLQLYVVQLAERYLPETVSM
                     ASALNISAFNVGIAVGAFIGGLVTEYIGLGYTPIVGFLMVFIAIILTFYMKKDK"
     gene            29958..30311
                     /locus_tag="U0342_000411"
     CDS             29958..30311
                     /locus_tag="U0342_000411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464397.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2421773.1"
                     /translation="MTKVYNIGVEATLEVIGGKWKPVILCHLREGKKRTGELKRLIPN
                     ITQKMLTQQLRELEKSGVIVRKVYEQIPPKVEYSLSEYGESLSEILNKLCLWGENHVD
                     LLLTKNEDIILLKRD"
     gene            complement(30344..30655)
                     /locus_tag="U0342_000412"
     CDS             complement(30344..30655)
                     /locus_tag="U0342_000412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464396.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2316 family protein"
                     /protein_id="HEM2421774.1"
                     /translation="MTLSKEQIKATKSEFAENLALANLTIAEVAKELNTSEVKIERIL
                     NLKQRSLNDGWILRNYLLRKVAEVGKTPVPFTALSGDYHGYWFLDGEEIDSGILSIGN
                     H"
     gene            complement(30672..31670)
                     /locus_tag="U0342_000413"
     CDS             complement(30672..31670)
                     /locus_tag="U0342_000413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2421775.1"
                     /translation="MKIITIEEHFESEVITNEINKVTGNLVSGQVSPEMFQYMQKELP
                     SAAEMQDTEKRLAFMDQHGIDIQVLSYGNSSPQNLDPKISVALCKRANDELAKVIQQN
                     PTRFAGFAVLPVGSPEDAAIELKRAVEELGFKGALVKGQFENKYFDNRFYYPIFEMAE
                     KLDVPISFHPSFIPETITEQYFASDAWSDVVTGVFSSAGFGWHMDVGIQVVRMILSGI
                     FDKLPNLKIITGHLGEMVPMFLNRMDNTLGHWTTLERKISDYYRTNVYVTPSGLLYQN
                     EWKFLLNELDENHLIYALDYPFVKPENARTFLDTLDLTDEVKAKIAHENAEKLLHL"
     gene            31772..32329
                     /locus_tag="U0342_000414"
     CDS             31772..32329
                     /locus_tag="U0342_000414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2421776.1"
                     /translation="MNNYVKVHQPLNVDLRTQKTQTKLYTVLERFYVEGRTFESISIK
                     DLCEQARVSRATFYRHHEEIIQVIEVQILRTMQYFSLEFDQIILTKENIQRLILRTIQ
                     KNPLLFQAIFWSRAENIFVDVVSGEILRISLLKEVSFSDSHFIPNYFARMILSLATEI
                     QQSNKDYTNGQLVELIQEAARFLQK"
     gene            complement(32361..32849)
                     /locus_tag="U0342_000415"
     CDS             complement(32361..32849)
                     /locus_tag="U0342_000415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="QueT transporter family protein"
                     /protein_id="HEM2421777.1"
                     /translation="MKMKILTVNAIIAALYVVLGMIVAPIGFMALQFRIPEIFNHLIV
                     FNKKYFWGIIVGVFITNLFFSGLGWIDLVFGVAQSAISLLLMIGISKYVKGIIPRMII
                     NTILFSLTMAIIAWELVIVFDLPFLITWATTAASEFIVMGVGIPLMYLLNKRLNFRKM
                     ID"
     regulatory      complement(32855..32902)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00522"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="PreQ1 riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="preQ1"
                     /db_xref="RFAM:RF00522"
     gene            complement(32997..>33171)
                     /locus_tag="U0342_000416"
     CDS             complement(32997..>33171)
                     /locus_tag="U0342_000416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003766098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421778.1"
                     /translation="KINKIIEYIVVAIIVLGWTYFIVIKEILPKNIGFISLVILSIIL
                     YFVGKRLNGKHSR"
BASE COUNT         9671 a         7221 c         5508 g        10771 t
ORIGIN      
        1 ttaccgccgt gaaagggcgg tgtcttaacc gcttgaccaa cgggccagat aaaaaacgaa
       61 aaatgaatat atattcaatt gaattcattt ctcttacacc agctttttta ttataacata
      121 atctgagtga ctgtcaacgg ctttttctaa ttttatttac atttttttca tcggaagttt
      181 tttatacatt tttacctcca taaaacaaag tcagctatgc tttacgggca tgctgacttt
      241 attttacttt tctcggtggt caaccataat aaaacttctc gtatcatagc gatgtcttga
      301 tctagaatat tccactggtc taccatcttt caaatacact acttgctcca cttctaaaac
      361 tgggtcgtgt tccccgcacg ctaaatattc ttgatcatat tcagatggct tatcggcatt
      421 aattttccga aaggcaccgc ttagcacgag tccaagtgaa tcttgtaagt atgcataaat
      481 cgaatgatgc aaaatttctt tcgttaaacc aggaactaaa tctgccggca tcgttgtatg
      541 ctctaacaca tatggtgcgc cgtccaagag ccgtaaccga atcaacttgt acactggctg
      601 gtctgctttt attaaaagtt gttcttgtgt tttttcatct gggaaagcaa tatcgaatgc
      661 aataatttta ctcgagattc ggttgtctcc catcattttt gtcaaaccgt cataatcccg
      721 caaactcgca tcttgcttat tagctaaggc atttttcatg acaaaagtcc ccgcaccccg
      781 ttgtctgtaa acaagtcctt caagcgctaa aacgtcaaag gcttttttta ttgtcattct
      841 gctacaatca taagctttac acaagctcac ttgatcagga agaatggatt ctggtggata
      901 agtaccgttg tttatttttt cgcggatatc tgctgcaatc aattcatact taaccaattc
      961 gatcgctcct tcgcttgaat taaaaatgtc tagccatttc tagtcaaatt atagcatatc
     1021 gaaaaggaaa atttaactta tttgatagct gcctctgatt ctctcgcaat atttgtccga
     1081 tcgactagtt ttaagaacgg ataccagata atgaggacga tgaagaaatc gactacttgg
     1141 agcgccccgc ctagccatga gttagttgca agaataccat tgatgacaat tggcaccgtc
     1201 caaggaacag caaccccggt tggagcagga acaataccag ctgccatgac gaaataattc
     1261 aaagtagtta caatcaaagg cgcaataatc catggaatta aaatcgttgc atttaataca
     1321 attggcatac caaaaagtac cggttcatta acgttaaaaa ttcctggccc aagtgctaat
     1381 cgaccaattt ctttactttg cttactcttc attaagaatg ctagtgcaat aacgactgct
     1441 aaagtcattc cagatccgcc cataccaaca gtaaagactt ccataaatgg tttcgtaata
     1501 atatgtggca atgggagtcc agctttatag gcatctaaat tttcaagcat taacgtattc
     1561 caaatcgggt ccattaccga gttgacgatg atttgaccat gcagtccgaa aaaccataat
     1621 acttggacaa aaaataaagc gattagtgtt ggaacaattc ctgaaccaag ccccactaaa
     1681 ggcttttgaa taacagtata aacaacatca tgtaagtttg tatggaagaa gaattgtacc
     1741 ataacattaa ttgctaaaaa aatacttaat gttaagatag cgggaataag tgctgcaaat
     1801 gatttagcta cagcaggtgg aactcctgca ggcattttga ttgtccaatc ccgttgaaca
     1861 aaaaatcgat ataattctgc agcaataaaa ccagtaatca ttccgataaa catacctttt
     1921 gccccaagtc gatctaacga aagcgctcca gtaataagct ctccatcagg actattaaag
     1981 aaaaatggcg ttaaaatcaa gaagctagca agggcaactg cccctccata aattgcttca
     2041 actttataat atttagatag tgaatatcca attccaaaaa caacaaaaac agtcataata
     2101 ctcatcgtgg cgctttgggc attcccaaga tacaactgta aaactgcctt cgtttcatca
     2161 ctccaaaacg gtagattcat taaaaccacc gcaatcgaac caaacattgt tagcggaaat
     2221 gccaacatga aagcatctct taaagtggtt aagtacctat tctctcctag ttttgcagca
     2281 agaggcatta acttttcccc aagtaactcc ataaacttat tcactttact tcccccaaac
     2341 atgatatttt tctaaaaaga aaacgttttc tatttattat tatactcatt taattttaaa
     2401 tgtctagtct ttttaaaata aaagaccgaa caaaaaagac tttcatcatc acaatgaaag
     2461 tctccttctt attttttctt cttctttgct agcttttctg ctgctttttg tttattttct
     2521 gctagtcgga aaagtgtcat ttctttaatt aattcataag gaacttcttc tttgattgga
     2581 aactgtacag caccttttga atgcttgtaa tttccgagtt tagattcgaa tgccgcaata
     2641 ccactagagg ctggataaaa cccgtagtga tttttcgcaa cagcaaagtg caccaagttt
     2701 ccttccaaat aaaaagtcgg catttgataa ctgatttttt ctgttgcttc cggtgcagct
     2761 gctttaatcg tttctctgat tttttgcaac acttcttttg tttccggtgg cgcttgggta
     2821 atatattcat caatcgttgt aaattctagt ttattatcca tagtcgattc ctttctgaaa
     2881 cgtttttctt attatagcaa atttcctaat taattttaac ttatcactat ttctccagcc
     2941 acgattttca gtaaaaaatc cgcgaacgag tctgctacaa tcgaactttc ttcaaactct
     3001 ggttccgaac catgaacaat atttccgtca tttaaagtga tagcataata ttcataacaa
     3061 ccgccaacac tcatcataat tggtaaatgt gcattccaaa atagttttac ttcattttct
     3121 aagtttgtat cgccttctgc tgcttctaaa ctcatttgtt caaaagaatt ccacgaaaag
     3181 gcgtcatcct cattctctaa aaaatcttct tccaacaaaa accaacaagt gtcacccaca
     3241 ttgctacaga ggttaagttg tctataaaag gccttatatg catctggcaa ctttccatat
     3301 ctctttaaaa tctgctctgg caagtttttc tctacagcag acaaatctac ttgccaatta
     3361 ttatttttag cccattcaaa aaaatgattt attggttcca tttaagctac ctcccactat
     3421 ttagagttcc attcgtctct gactttcatc aaaatcttgc ctagacgatt ttttccagag
     3481 ccatctccgc cgtcgcccca ataatgatca ttttccgtat gttccactaa aatagcattc
     3541 tctgtggtta aaagcatttc tttcacttcc gaatgttgcg ctacttttgc tctgattgct
     3601 tttaacatca cttcgtcttt catactttcc cagccttttc gcagtgggaa gtctctattt
     3661 ctacccaatt ttgctgcatc tattggtttt ttcgtattaa ttactttttt aataattttt
     3721 ttatctataa atttttgtgc ttggaaatag tgttctgtgg ttgggtaagt cacgccgtct
     3781 atgacaattg gatgtaaaga gaaattagag aaacagccat agtccgcatt ttcactataa
     3841 aaatggataa ccttcatttt gcacctccga gtatttacgt tatgttattt gcaacttgag
     3901 cttatctttc aaaataactt tagcatacat atagacgcaa atctatcgct atttttccgc
     3961 aaaaaaagac actgcttagt ttcctaaaca atgtctttat aagttattac ggagaaggag
     4021 ggatttgaac cctcgcgccg cgcgagcgac ctataccctt agcaggggca cctcttcagc
     4081 cacttgagta cttccccaaa ctccacaggc aggactcgaa cctgcgaccg atcggttaac
     4141 agccgattgc tctaccaact gagctactgt ggaattatct gacttccact agtatacgca
     4201 gaacttagta aaattgcaag acttttcatg cgttttctgt ataaattttc ttggaacctg
     4261 tttgtattaa ttttccacca caactgccac agcgataacg gttcacattg aatctgcgtt
     4321 gtcttaaaaa ggacttcccg caacttttgc atgtatattc atgcatggta atttcacgtg
     4381 gtatcgttgc acaaaatctc ggtgcgtcta ctttttttaa taactcacgg aaatcttgat
     4441 cgcgatgctg atagcctttt ttctctaaat gaaggtgata atgacatagt tcgtgcttca
     4501 taatcccgat aaagtacgct aatccaaagt tttctaggta cttggggttc atttcgatat
     4561 gatgactttt tagcaaataa cgtcccccag tggttcgtaa gcgcgcatta aacacggctt
     4621 ggtgacgaaa ttctttttgg aaaaattgca gcgacacttc ttccatgtgt cgctgcaatt
     4681 ctgcttgatt cattatttaa cacttccatt aggattaagc atagttaaag caatacggtt
     4741 tttctttgta tctacttcat ctacccaaac agttacaacg tctcctactg aaacgacatc
     4801 catcgggttt ttaacaaaag aattgcttag tttcgaaata tgcacaaggc cgtcttgttt
     4861 cacgccaata tcaacaaatg cgccaaagtc aactacgttc cgaacggttc cttgtaattc
     4921 catgccttgt tttaaatctt ccatcgaaat aacatcttgt tttaaaagtg gtgctggaag
     4981 ttcgtcacga aggtcgcgac caggagcaat taaattatca atgatatcgc gcatggtttc
     5041 tttaccgatg cttaatttct ctgcttcttc tgggatacta agcgcttgaa gtgcggcttt
     5101 taaatcctcg ctaccaatat ctttcaatcc gaaaccagct gcttttacaa tttgttcagc
     5161 tgccttataa ctttccgggt gaatggcggt tttatcaagc ggattttcac cttccaaaat
     5221 acgtaagaaa ccgatacttt gttcatacga ttttgcccca agacgaggta cttttttcaa
     5281 ctctttacga gaagcgaacg agccgttttc ttcgcgatat ttacggatat tatttgcgac
     5341 tgtcttgttt aagccagcaa catattgtaa caaagaagcc gaggccgtat taacgtttac
     5401 gcccacttgg ttaacggccg tttcaacgac gaaagttagt gtttcattta aacgtttttg
     5461 cgctacgtca tgttgatatt gccctacgcc tacagatttt ggatcgattt tcacaagttc
     5521 agctagcgga tcttgcaaac gacgaccaat cgaaacagcg ctacgctctt ctacttgata
     5581 gtctgggaat tcttcgcggg ccgtttcact cgctgaataa acactcgcac cagcttcatt
     5641 gacgatacaa taataagcat tcgatttcga ttcacgaatc acttccacaa taaattgctc
     5701 tgtttcacgt gaggctgttc cgttaccaat tgcgataact tccactttgt atgtggataa
     5761 aatctccgca attttttgtt tggcttccgg acggcgtgct tttgctgtat gtggataaac
     5821 aacgccaatt tctagtactt tccccgtttg atctaataca gagaatttac aacctgttct
     5881 aaaagccgga tcgaccccaa gaatgatttt tccttttaaa ggtggttgta aaagtagttt
     5941 gcgcaagttc tcggagaaaa tatggatggc ttgttcttcg cctttttctg ttagttcacc
     6001 gcgaatttca cgttcaattg ccggtccgat aaagcgttta taagcatcca ttatagcttc
     6061 ttctacgtat ggtcgtgttg cagaattacg gttttggata actttttcaa ataaatattg
     6121 gaaaattttt gtcgtatcta cttggacttg tacacgtaaa atgtcttctt tctctccgcg
     6181 gttaaatgca aggatgcggt gacttgctac tttgccaatc atttcgttaa attcataata
     6241 catttcgtaa acgccttttt cgtctacttc ggcgtttttc gctctggatt caatcatccc
     6301 aaatttgcgc gtaaagttac gaatccactc acggaaacta ggctcatcac tgatttgttc
     6361 cgcgatgatt tcatgtgcgc cgagtaaagc agcttctgct gactccactt ctttttcttc
     6421 tgaaatatag tttgcagctt ctttcagtgg gtccgcgtta cttgggaagc tcattagcca
     6481 atcagcaagc ggctctaatc ctttttcttt cgcaatcgtt gcttttgtgc gtttcttttg
     6541 tttgtaagga cggtataaat cttcgagcgc ttgatgtttt tccgctttgg taattgccgc
     6601 tctcagttcg tctgttaatt ttccttgttc atctattagg cgaataattt cttctttacg
     6661 attttctaat tttgttacat attcaaaggt ttcttcgata tcacggattt ctacttcatc
     6721 taagctacca gtcatttctt tacggtaccg cgcgataaat ggaactgtgt tgccttcttc
     6781 cattaatttg ataacggcat tgatttgcgc tggtttatac gttagcgatt tttggactag
     6841 ttttattatt ttatcttgca tttgttccat acttgatagc ctccaattat ttcattatct
     6901 actaagtgta acataattac gtttcaactg acaaaagcta tcagtctccc ttatttaaag
     6961 cattttccgc ataatgaatc gcatcttcgg tatgggaaaa gaagtgttct tcgccgattc
     7021 ggtcgtaaag cccgctaccc ttcaaacttt ctttcgcttt atctgttagt ccagtaatca
     7081 aaatttgccc gccttgcttc gaaaattctt tttcaatttg gtggaaatag ccttctgccg
     7141 tagcatcaat aatcggcact ttccccattc gcaagataag atattttggt ttaacatgga
     7201 ttgctttgat aatattttgt tggaaaatct gtgctgcacc aaagaaaagc ggcccacgaa
     7261 tagtaaaaat actaattttc tcgtgtaaat gaggagcaat ttcggcgcct tctggttcga
     7321 tttcttcaat ttgcatcgaa cttcccattt gtttagcgaa aagcaccact gccagcagca
     7381 aaccaacttc gacggccaca gttaagcttg caaatactgt taataaaaag gtaataatta
     7441 gcactaaagt atcgcccgat ttcaacttaa taatgtgctg gaaggttttt cgttcactca
     7501 tattccaagc aactagcatt aaaatcggtg ccattgcagc aattggaata ttgacagcta
     7561 ctggtgcaag tacaagtaaa gtgagtaaaa cgaaaatccc gtggataacg ccagagacac
     7621 ggctagttgc gccattatta atgttggttg ccgttcttgc gatagctccc gttgcgggaa
     7681 ttccgccgaa cattggcgtt acaatatttg cgataccttg cccaatgagc tcgcgattac
     7741 tattgtgttt tgtattcgtc attccatctg ccacaaccgc tgaaagaagt gattcaatcc
     7801 cgccgagcat cgcaataaca aaagctggcc caatcaattt actcatattc gcaaaagtca
     7861 tatcgggaaa ttcaaaagga ggaaaagtac tcggaatatc tccatacgct gacccaatcg
     7921 tcggaagcgc atccgggaaa aatagcatcg caatcgccgt cgtaatcaca agtccaataa
     7981 gtggtgctgg aattctcggt aaaattttag gaaaaataaa taagacaagc atacaaatac
     8041 aggaaatgaa cacactatag aaattccatg aatctaaatg taaccagatc tcattcatat
     8101 tcgcgacaaa tgattcatgt ttttccatac ctgttaaacc gaggaagttc cccacttgcc
     8161 ccataaaaat cgtgacagca atcccggctg taaatccgat agttacagga cgcgggataa
     8221 atttaattaa agtcccaatt ttaaaaatcc ccattaagca aagtaagacc cctgccatca
     8281 ttccagcaac gagtaaatct tggtacccat aagttaatac gattcctagt aaaactggaa
     8341 taaaagcacc agttggacca gcaatttgaa acttcgagcc cccgaaaata gaaacgatta
     8401 ttcccgctac aaaactcgaa taaatcccat attctggact tacacctgat gcaatcgcga
     8461 aggacatcgc tagtggtaaa gctataatgc ccacgataat tcccgcaagc aagtctttcc
     8521 taaatctcgc ccacgtataa tcttttacac tattcaacca aactttcttc aatttgctcc
     8581 ttctctctta tttatatttt aatccgcgcg aaaaaacgca aagcaagatt gcttcacgct
     8641 tattaagtga tatttatcac atgatgaagt ataaaaaact agcgctctat tctaatatac
     8701 cataaataga ctaagttctc atgtccatta agaaaaaaca ccttttaaac taggaatcat
     8761 ttaaaaggtg tttttgttat tccggaaatt tcccaaccat aaaagtaaca tcatctgttg
     8821 gaatatctaa tatattacgc tcgattaaat gcccgatttt cactacacaa agtggcgatt
     8881 ctaggctttt tctaacgcga gaaagaacaa gtccatctga atgcattaaa aacttactgc
     8941 ctggtttata tttaaacgat tgcaaccgat atttctgttt tcgaccggac aaaaatccag
     9001 agccagaaag cggaaaaata agcttatctt ccatcccaat catataaaaa cgaatattac
     9061 ccataccagt ataataaagg gtcttcgtta agtagtcacc tttaataata gctatcgcag
     9121 cacctcgaag tcctgaaaca gcctggttcg ctttttcgag catatcggta atatctgcat
     9181 ggatatcctc ttttatggca tcaacggtcg ctttggcagc tctattagct tcgagcccgc
     9241 ttccaagtcc atcagaaaga acatacagaa aaccattttc gtcttcatgg gtataataaa
     9301 catccccgca gtattgttgt aatgctttag aacgttgaaa tacaaataaa ttatttgatt
     9361 caactgcctt gttcatttac tccacttcct cattctgcaa cgcctctcga agttttttaa
     9421 tagcttgacg ttggattcta gacacatgca tttgtgatat atcgagtagt tcacccgttt
     9481 ctttttgact gcgattttca ataaatgtaa attgcaaaat cttctgttct cgctcatcta
     9541 aaacagggag aactttctct aagagcatac gttgattcac acgttcaaat ccatcatccg
     9601 taccaccaac aacatctaat aaggtaattg tacttccatc cgaatcagct tcaatcgaat
     9661 gatctacaga aagcgcttgg tagctttttc ccatttccat tgcttctaaa acttcttcct
     9721 ccgtgacacc gatgaaatca gcaatgtcgc taatttgcgg cgagctttgt agttctctcg
     9781 tcagctcttc tacggcattt ttaattttcg gacctaattc tttgattcgg cgcggcacat
     9841 gcacactcca tgttttatca cgtaaaaatc gtttaatttc gccaacaatg gttggtacag
     9901 caaatgcttc aaagcttttc ccaaacgtcg catcatatct tctaatagct ccaagtaagc
     9961 caatatttcc aacttgaact aaatcttcat gaaaagattt accttgggaa tatttgcgag
    10021 caatagactc tactaggttt ttgtaatgaa caactaaatt atattgggcg tcttgatcgc
    10081 cattttcttg gtaagcggca atccatatat agactttttc tttcgcctct ttatcaggtt
    10141 gagatacttt tggcattctc ctccacctgc ttttcattaa tatatttggt cattacgaca
    10201 gaaacccctt catcataata aagtttcacg tcatccatta atgtttcaat taaaaataaa
    10261 cctagacctc cgatacgcat catctccgca tcttccccta cctcatatgg gccaatttct
    10321 tgtttacggg tttctaagtc gaagcttgtt ccattatcag aaacacgaac ttctaatttg
    10381 tcttcataaa taagatattc tactgtaatc tcaccatcat cttctccttt aaatgcgtgc
    10441 tttacagaat tagtgatggc ttcacttacg gctattttca aatcttcaat tgcttcataa
    10501 gaaaatcctg cgcgacttgc aattcctgat aatgaaagtc tacctaaact aacatattca
    10561 ggcttggcag gaagttgtaa tgtaattttg tcatgcattg ttgccattca tttcaccctc
    10621 tacatttttg atttcaatga tatctgacaa tcctgtgatt tcaaacaatc ggaaaagtcg
    10681 gtcgcttaaa ccaaacaaga caagttcact ttggcgttga cgtaagcttt taaacgctcc
    10741 tacaaatacg cctaatccgg tactatccat ataacttact tctgttaaat cgattcgaag
    10801 tactataccc tcttttactt gatatacttc aagtgcttct tttacctttg gcgctgtata
    10861 agcatcgatc tccccagcaa caaatatgtc tatgtggtca gtatcacgtt cttttatttc
    10921 tatactaata ttcatcactt caccccatct aattttaagt atactgtcga ttttacccta
    10981 actaataaaa ttaaaacatt caaaaataaa aacgctccac tctttaaata cgtttactca
    11041 ccagtaaatg ctctctaaag aatgaggtac gtcttcactt cttcttattt agttcgctta
    11101 atacaaataa gcgtaaagtc atcatgcaac tcaaagtttt gcattttaac taattgatca
    11161 taaatcgcat gaaccatttt ttcagcagat aatgaaatat gcgctgctat aatttctgtt
    11221 aactcttcac gttcaagaaa accattggct gttcttgttt ctgttacacc atctgacata
    11281 ataaatatag cgtcccccac ttcaattttc ttatcaaatt gacggtagac agcattttta
    11341 tctacaccca gtggtaaacc tttggcgtat aaatcagaaa agctgttttc tttatgttgg
    11401 taatataagc ccagttcatg tccggctgaa ccatattcaa acaaatgtgt atcttcgtga
    11461 taaagcccgt aaaacatcgt gataaacata ttgtcgttaa tattttcttc tgctacttgg
    11521 tttaatgatt cgagtacgat agatggtttt ctgtcgtccc cagtcattcc agctagtgcg
    11581 tattttatca tggaaatact aaatgcggct ggaattcctt taccaataac atcagcaagc
    11641 gcgataccaa tttgtttgtc accttcttct gtaaagctat agtagtcacc gctcatttgt
    11701 ctagctgcga cgctaataac tccaaaatca agttcatcgt gttccggtac ctctgttttc
    11761 attaacgttt tttgcatatc ttctgcttga gcgatttcac tacgtaattc tttttgctcg
    11821 gttcttagac taagatgctc catataagct aagccgtagc ctaccattat ttctagtagt
    11881 acatcaaatg ataatcgtac aaaatccggc aactcttttc cgtatagttc aagaaccgag
    11941 cgatgtaaat ggacaatttc ttctggtgat actcgctctt ccatagcttc tctggataat
    12001 ttttcgcaag tataaagaat ttcttcatct tgatgttcta aatactgaat aagaatatca
    12061 cggtattttc cctcaaaagc tttttccatt tttttctagc tctccttacc gaacccattt
    12121 cgttgttgta attaccgttc ctttagaatc gccttcaata ctggattcaa tatcaaaact
    12181 gtccattaaa cgtttgactc ctggaagccc tgctccaagt ccgcccgatg ttgtataacc
    12241 atcttgcatt acttttctta tgtctacaat acctggacct ttgtctttgg caacaataat
    12301 catcccttgt ttaccagatt catttacttt ttcgatacag atttctcctc gtccagcata
    12361 aaggaaaata tttctagcta attcactgat ggcagttgta attcttgctt ggtcaacggt
    12421 tccaaagcca atttctttag atatttttct acctagttgc ctagcagcta caatgtccca
    12481 ttcattaatt atctttacac aggattggaa tgtcatgttc attcccccaa ttcctgttta
    12541 agtttttcca gaccactttc aaggtccatc gccgaaagta ctccgctaaa cgtaattccg
    12601 agttcaatta gtgtaatcgc aactgctggc tgtatcccag ttacaaccac ttttgcaccc
    12661 attagtttag acatacttac tacatctcca agaatttttg caataaatga atcaataaaa
    12721 tcgatggaag ttatatcaat gactactcct ctggccgacg tttcatggat ttttgcaagc
    12781 aaatcttcct ggaattctac cgcagtatga tcatctaatt cactctggat agaaattaat
    12841 aaacattcac ctaactttaa gattggtatc cccacagtat tcacccctct ttttctacta
    12901 tctctctgtt cgtcaaggct agcgcacgct ccatgccttt tttcattgtg ttggtcgtga
    12961 taatttgatc taattcaatt cctaagttaa cgattgtttg cgcgatttct ggtctaatac
    13021 ctacaagcat cgcctgacag ccgacaagtc taaccgcttc ggacgcttga ataatatggt
    13081 gcgcaaccat tgtatcaaca acaggaactc ccgtaatatc aatcaaaacc acttctgacc
    13141 gattttttac aacacctatt aataaatttt ctatgattaa cttggctctt tccgtgtcaa
    13201 tcgtcccaat taacggcatt acagaaattt tttcaaatat tggcaaaagt ggtgccgata
    13261 attcctgtag tgcacttttt tggatagaaa ctgtcttttc ccacgtatcc gcgtaggctg
    13321 tgaccacttt gttatacatg gaggaaagcc atgtttcaaa gcgataatag gcatcatctt
    13381 caggtttttc ttctctcttt aaaaataaat cttcatctct cattgctgta tatactaaaa
    13441 gcccaaaaac acgtaggcca gtggtaacaa aatgaatcgg ccaacctagg tggaccactt
    13501 tctctgcaaa atcatctagt ttttcgttga atttagagcc gttttcagtt acattcgaaa
    13561 caattaaatc cacaaattct ttgctagttt cttcgtacat tgcttctttt gcaatgtcgt
    13621 tgattagctg atctgattgt ttttccattt cattcatcca gttgtttagt aagtctgctt
    13681 tatttgtacg gatgaagttt gcaaaatctt tatacatcag ttattttcca acctttctcc
    13741 actattaaca aaattttctc tcttattgtg cggtttgctt aactgccttt taaaaaagac
    13801 attagaaaca aatttagcga gtatgttgat acgcgttgtt tgtaggtttc tgatgtcctt
    13861 actgtttctt cagagcagtt aattatttca ttatgtatta aacttattat tttacgtcag
    13921 acccttttgt cctgcattca tcattgtatg ttatttttta ggatggatta aaattctact
    13981 actcctagac tgacttcaag tgccttgttt accttggcca ttaaatcttc gtccaaatgt
    14041 gtaattttgt ctgtcaggcg ctgtttgtca atcgttctaa tttgttctaa aagaatgaca
    14101 gaatctctct caaagccatc tttacgagta gcttccacgt gtgttggcaa ttttgctttt
    14161 tgaatttttg cagttattgc tgccacaatc acagttggac tgaatctatt accaatatca
    14221 ttttgaatga tgagaacagg ccgtattccc ccttgctcgc ttccgaccac gggggaaagg
    14281 tccgcgtagt atacgtcacc acgcttcacc atcagccatt aacctcctaa aatactaata
    14341 ttcctgtctt ccgcttctgc ttcgacatgg gtacactcgc atgcgatagc gaaattaatt
    14401 gtcgccattt ctgcatagcc gcgctccatc tcgtctctta attcgcgagc ccttttctct
    14461 tgtaaaaact gttgcgttgc ttccattata acttcactcc gccccatttt ttctttttct
    14521 acaactacgt cgagttcttg tatcatttcc tgtgtcagtt ctacggatat tatcatccgc
    14581 ttttctttct ctaacacgtg tcacaccccc aaagcctcgt acctgtaagt aacaactata
    14641 tcgtaccatt atcacgcctt gaagaaaaga gttatttcgc attttattgt taagaatatt
    14701 acagttctag ctgatatact ctcttaagtc ctatatatag ctataaagtt tcatatgtta
    14761 gattataaac gcttcttcta aaaaaagcac gaatattacc ttctaatgga tgtattttct
    14821 aggtatacgc tcatttaaca gacaagtaac ctcataattt attgtatcta aatagtgagc
    14881 ggcatcatct gctgttatcg tgtttccatg gtccgtgcca attatcgtta cttttgaacc
    14941 agtttgaaat tcgcgcggta gttttatgat ggtttgatcc atacaaacgc gtcctataat
    15001 tggggctagt tccccgtcta ctaaaacatg aaatccgctg taatgacgaa tcaacccatc
    15061 tgcatagcca atcggtaacg ttgcaaccca ttctcgttct gttgcagtgt aggttgctcc
    15121 gtagctaaca ctatcacctg gtgcgagttc tttcacatga accatttcgg tatagagtgc
    15181 aagggctggt ttaagctcaa atggtaagct agttttgatt tcggtggaag gggttaaccc
    15241 gtacatcgat ataccaaagc gaatcgcatc aaacccgatt tgtggctgta ataatgaagc
    15301 agctgaattg gctgtatgaa catacgttgg gcgatttttt aaactcgtta aaatggtttg
    15361 gaacttagct aattgttgtt cgaaataact agtttcaagt tggtcggctg tcgcaaaatg
    15421 cgtgtagata ccttctagtt gtagttgatt gtctttagca attgtcgttt cgattcgcct
    15481 tgcttcgtcg gttgtacgaa tcccaagacg ccccataccg ctatctactt ttaaatgaat
    15541 gcgaagtggc gcttctaagg ttagttcctc tagccagtcc tctctaaaaa cagtgaggga
    15601 aatgtggttt ttggccgcta aatttgcatc ttcttttcta gttgcgccaa gtacaagaat
    15661 aaagtcatct tgaaacccag cttctctaag agccaacgcc tcatctaaaa tggcaacaca
    15721 gaaacctttt gctccagctt ctttcgctgt tctagcaact tcgataattc cgtgaccata
    15781 tgcattagct ttgactactg cccataaatc cacattttct ggaagtttat tttgttcatt
    15841 ttttatattt tcgcgaattg ctgcgcggtc tatctcaatc catgtaggac gatgccagcc
    15901 tgtcaccatg attgttcact ttcctttcta aatttcaatt atcacttgag ctgcggctga
    15961 tctagctgtg tgggtaatgc tcacaaaaac gttttcacct gatttgactg gtaaagtaac
    16021 atggggtcgc ccatcttcta cttgcaaaat ttctacatcc gtaaaactta aatgtttgcc
    16081 aaaaccagtt ccattcgcct tagcatatgc ttcttttgct gcaaaacgcc cagctaaaaa
    16141 ttcgattttg cgattacctt cgtatttttc aaattgctta atttcttttt ctgttaaaac
    16201 acgttcgata aagcgtggat tcttttccac gacttgtttt acacgttcta aatcaatcat
    16261 atctagtccg attcctttaa tcatgttaca cctcttccaa gtaatctact aattccttag
    16321 cggctgtttg agctcctgcg atgcaatcag gaatacccac accttcgtag ctcattcctg
    16381 caaaataaac ccctgggtaa tctgctttga tgttcttttt caattgtttt agtcggtcct
    16441 ggtgattaac taagtattga ggcattgcgg atttcattcg gcttacttca taaaaaagtg
    16501 gcgcggcgtg aaggtccatc atttccgcat aatctctcaa aacagctgaa acgattgctt
    16561 catcacttgc ttgctctaac caagtttctc ccgctttccc aacaaagcct cgtagtaaca
    16621 ttttattttc tggtaccata tgcggccatt ttttctgcac ccatgtacaa gcagtggttt
    16681 tatatggggc ggttctggca actagatagc ctgttccatc tggtaaaatc ggtacatctt
    16741 gttcattgta tgctaatgag acagttgcga gagtcgtaag cggttgtccc gcgaatggtt
    16801 ctgtcgtttt ttctgctaat aaatgaatta gcgcatcatg tgtggcagcg ataatgacgc
    16861 catctgcctc cattttatcg ccatctacaa aagaaatttc gtaagagcta ttctttttcg
    16921 taatgttcgt tgcttgtttt gctgtatgca aattttcttt tggaagtgcg gcggcaatgg
    16981 cttttggtaa cgcatctagc ccgccttcta atgttcgaaa agcaccaata gtagcttttg
    17041 tccctgtcgt ttgcatgcta ctttctttta agccatccat caaattccca tattttttaa
    17101 ctgcttgttc gaattgtgga aaagtggcgc gtaaactcat tttgtatata tctccggcat
    17161 aaattcctga taaaagtggt tcgataattg ttttgactaa ttctttaccg aatcgcgctt
    17221 caaagaattc gccaagtgct tgatcttgtt cttgattatt tcgttccatt gttggttctt
    17281 gaagtgcgcg agctttccca atttcggata cgagtgtact agctagcaat gcttctttat
    17341 ctgttggaat tcccatcact gagccttctg gaatcggatg aagtgctttt tggtggtaaa
    17401 tgtaggatct tcctgtcgcg ttcgcaatca gtttatcttc gagtcctaaa tccttcacta
    17461 agcctacacc agctggtttt cttgctaaaa aggagtctgg tcctttttca attaaaaatc
    17521 cgtcccgttt aaccgtttca aatttcccgc ctagtttttt gtctttttct actaattccc
    17581 acgtataatt cggatgtgtt ttttgtagtt catacgctgc tgcaagccct gataagccgc
    17641 ctccgataat gactatatgt ttcactactt aaccaatcct ctctatctac tctttcgttt
    17701 attctatcta ttttaccaga tttcagggta attgaacaaa aaataaaaga acagccattt
    17761 ccaaaattac agtcgctatt gatcagcgat ttttaggaaa tgacgtgttc ttttttaatt
    17821 tattgttttg gacgggctgt accaattgta taccttgata gctaagtctt gattgatata
    17881 gcgaacataa gcttcagcgc ttgtacttcc tgatttaagc caaacattta agtgccttga
    17941 tccgcctttt tccatccaaa tgctttgtct taagcttaaa ccttgaattc gctctttgcg
    18001 gataatgtgc gttaacttgg agaaaattgg gcgtgactgg acaaggagtg tgtgcttatc
    18061 tgtgaaaact ccggttgcgc ggtagctggt tacccctttt atccctgcta aaactggcaa
    18121 aataatacta attaagccga gtgggaaaaa taaaatactt gctactgcgg ctgggataat
    18181 tgtccagatc aagtaaatct gcaaaaatct gcgcaaactg gcttttggag cacgttccat
    18241 tttttctatt tcaaataaat aatctggtag catttctttt aatgttttta aagccaacgc
    18301 ttttttcata ataggcaaaa gtaaaatgtc gccggatagt ttttcatcac ctgagttccc
    18361 tgcagtagta actttgaccg ctactaagcc gagcatttgt cgtagtggtg attcaataat
    18421 ggtgattcct tgaatacgcg aaagtgaaat ggttgtatgg tttcgttcta atagtccttt
    18481 ttctacaaca agtgaattgg gatatttcat caatttgaac tggaaatact tgaacaatgt
    18541 cgtcacaatc gatattcccc ataataccaa aagaatcaag acaattaata caattagtac
    18601 gataatgccc attttccata actcttctgc ttgagcttcc atccagtctg tcgggatgac
    18661 ttctcggaat tgttgcatga atgctagaac gataaggagc gtcccgaaaa cgccgccgga
    18721 tgttactgcc attaaaataa gctgttttgt ttgtagcatg accgtttttt ctggtgcttc
    18781 tgccacttct actgtggttt cctcggtttc tggcacggct tcttggatgt ctctcttttt
    18841 accgtcgcgt aaatcattta attcgtctac tacgccaact gggacagcga ctaaatcggc
    18901 ttctgctttc ccgttaccgc cagctgtttc gattaaaatt tggcagacat taaatgggat
    18961 aaagaaaaac cattgtttct tttggacggt ttggatgcgc tcgtaaggta tgtatgtatt
    19021 ttttcgaaaa atcaaaccgt atttgatgcg aatcccttgg tcttcgaggg tgtatttgta
    19081 ggttatgtat tttaagactg cgggggttaa aatgagtaat ataacgatga caataattaa
    19141 atatacagcc cagtccggca aataaccgtt actattaatg gcgcggaaaa cggaaaataa
    19201 accgacgacg ataggaacaa tattgcgtct tacgttcgta ataatttctt taatgagggc
    19261 aatcggatgg aggcgtcttt cttcaaacat cttctttcgc caccttcaca agttcaagaa
    19321 tatgatgtct aagttcatct gattcagact cgtttaccgc ttcaatctta tgtgtttttg
    19381 cagcagttgt aatcgataaa gaaacgagtt tttgtcttct aagtagcgga ccttgctccg
    19441 tttccacgtg ttgaatgcga atcatcggaa ttaagacacg acttctaaaa ataatgccgt
    19501 gctgaatttc catttcgtct ggtttaatct ggtagctcca acgtgcaaaa cgaaacggaa
    19561 taatgaataa gtaaataaag gcagcataaa gtaccgttaa tccaaaaccg atcgcactcc
    19621 accacaccga agctcctgca taatacaaaa tgattgccgc tacaaccgaa caaagtagaa
    19681 aagtaagaac agcaattccc tccgtttgcc gccaaactgt tttaattttc tccggtaatt
    19741 tcttttctaa attatcaagt tccattgctc tactcctttt ttcttttatc ttacgttaaa
    19801 aacagctaaa ttggtagcga ttttttaaat ctatcatgtt ttattcatag tttgttcata
    19861 tttctttttt ataatataac aagaagaggt gagaaggatg aagaaaaaag gttatattct
    19921 attaataata gcgcttttgt cgctaacgtt aaactggctt ccggagattg cccacgcgca
    19981 aaaagaagca acaggaacta cttatacaac tgcaaccaca aacgaattaa tggatatgtt
    20041 tctacctcac tccatccaaa atccttatat tgaaacgaca aaaaatagcg cggaattaat
    20101 gtttgtaaca gaggaagccg ccacgattac caccgaaaca aataatcaaa cgcaatcaat
    20161 tgctggtagc accgaaaacc atcaatttgc attagctaat ttgcaacctg gaaataattt
    20221 agtgacaatc acagcgacaa tgacagatgg gactagtgag agcaaaacaa tcaccataaa
    20281 ccttccagag aaaccaaaga aaaactctaa atcgtttcat gatcattcta aaaaccaaca
    20341 agtgacgcat cgaaaaaaag ggcacttatt ataataaaaa aggaagcact cattcataag
    20401 aagagtgctt cctttttcgt taatttctac gtccaaatgt aaaaccaagt gctactaaac
    20461 ttacccctgt tacaaatggg ataaacgggt tcgaatcccc agtatgaggt aaaacccctg
    20521 ttgcttttac gacaccgtct acgcttgttg tgctagtcac tttttgcaca ggtggaatgg
    20581 tgattttgga taagagtgtt ttttcaatcg ttagttgtaa tttttgaccg gcttgtaaag
    20641 tatccgatgt gagattgttc cagtctttaa tttctgcaac agagacatca aacttattag
    20701 ctactccagg taatgtatcg ccatctttca ctttatagat gactttaatt ttaccatttt
    20761 gttcggaatc tttaacgatt tcaagtggac caaaatctgt ttcgactgtt ttttcaatca
    20821 gttgcttttc agccggaata aatggtggtt cttctttaac cggtggcgct ggcggggttc
    20881 ctgttccttg tccaccgcta ccgtaatcat tcactgtcgc atttctcgaa acagcctcta
    20941 ggttatcacc ggatagcgtt gctttattcg tatagctttt ttgtttcgtc gtaattttcg
    21001 tatcataagt aatgacaaca gattgattat ttaacgttcc aatagataat tcaaaattgc
    21061 gatctgcatc cagcgtaatt ggctggatat tggtagttat cacttttttg ttggcatcgc
    21121 ggtatttgat tgttgcactt ccaagcagat tttgccctga gccaagcgta tccgtgtaaa
    21181 cggcattatc aataggtgtc agcgcattat ttaaagtaac agtccaatgt aaaatactca
    21241 agtctttatc atccattcgc ccttgcttaa aaacgattgt tggtgagccc gtaccgccac
    21301 cagtattaac tttgctaata aaggcgttta tcgtttgggt cgaatttttc acaggaaaag
    21361 caattggatt tacttgatct gtttgaatat ttttgctgtt aaaagttgcg ttataataaa
    21421 ggctgccact taaatctgta tgtgtattta catagtcggt aaaagttaat gtaatggttc
    21481 ccgttgcttg atcaatggtt gcatttgcga tcgtgtttcc ttgcgaatcc ataagaggga
    21541 atccgccata attaattaat tttagctgat taggaatagt aagcgtcatt gtttctccgc
    21601 ttgcaactgg ctgtgtaata acgaaatcat acgccactcg cactttacta ttttccttaa
    21661 aattcgttgt ttgctccccg ttttgatttt gtaatgatac attagtaaaa aaactgctgc
    21721 cgtaatctgt tgcagcttct gcttttgggc ttaaaaatcc agtgataatt aaacatataa
    21781 ttgcaaatac taaccatctt tttttcattt tgtttcattc ccccttaaaa catctatctt
    21841 tatagttccc acaacttgct tgttaaaaac cgtacaatga ttttgcgcac aaaaaaacgc
    21901 cagaacaagt ctgacgtttt tctttttata gctgcaataa atattggtaa ctggcttcta
    21961 gtgtttcgaa catagctcgt ttggatctat cttgctcaat gcaatagtac tcgactccgt
    22021 ttgcttcgcc ccattcaata atagcgcgaa aatccacttc accttgccct atttcgacta
    22081 aattattatc catatcttct agttcaaaac cgctcacaaa atctttcata tgcacaatcg
    22141 gcgcgcggcc gctgtagcgt ttaataaatt ctgtttcatc atgtccagct gcgcgaatcc
    22201 agtaagtatc aggttcagca taaatacaaa taccgtcaac tgggtcggta atataatcca
    22261 tcactctgcg accatgaatg cattcattga aatcgtattc cggattatga agaccaatgc
    22321 gaaaacctag tggatgtagt ttttccgccg cattaattaa cgccgctttt gttgccgtgt
    22381 agcccgctgt cgtttggtcc tcttcttcaa tatatttgtc aaaaacagtt ttacaatcaa
    22441 agaaataagc ttcttcaatg atgccatcca aatcattcat aaaacgatca tgcttgatgt
    22501 gcatgccgat cacttttaac tcatattttt gcagtaaacg acgtacctcg cttggatcat
    22561 tgccacgcat accatcaagt tgcacatatc gaaagccgat ttcatgcatt ttccggagcg
    22621 taccttctaa atcgcgctcc atttcttttc gtacagaata aagttggact gctatttttt
    22681 cttttatatt cattgtttct ccgcctttcc ttatgccttt aaatccagcc aatcaacctc
    22741 agacgctgtt aatttaatcc cggccgctgc aacggaagat tgaagttccg tagcattttc
    22801 cggaccgatg acagcggctg tcgggaatga ttgcgttaat acataagcaa gcgaaatttg
    22861 gattggagtg caaccttttt ggttagctag ttgcttggca cgactgtatc tttcccagtt
    22921 tgcctcacta taataaactt cgaccatttc cgtatcgcgc gtgtcttcct cagaaaatct
    22981 accagagaaa aatccgcctg cttgtgatga ccaagaaaat agtggcaaat tcgtcgcctc
    23041 atgccagcga atcatctctt cactcgccga aacacaattt tcccagcgtg gtcgattcac
    23101 ttttgccaaa ctaaaattag ggctgttaaa gcttagtggc gtcaatccat ggctcactgc
    23161 atattcattc gcttcgataa tacgcgggag ctcccagttt gaaagtccga tagcataaac
    23221 gcggccatct tccacttctt tatgcatcgc ctccataata ggacccactt ctacatctgg
    23281 attgtcgcga tgaagtgcga ataattcaac atgatctgtt tgtagcgtat ctaaactaac
    23341 cgaaatatct tcgtgaattg cttccggagt aacccgcggc acgtcgcttg cttcccgaac
    23401 tggatgcccg cctttcgttt ggataatgac actatcacga tttcctctca tattcatcca
    23461 cgcgccaatc gctttttcac tatggcgata atggcgcgcc gtatcaaaaa tatttccacc
    23521 catttcaaaa tattgatcta gtactggacc cgcaaaatcc atattatctg cacgtaagaa
    23581 atctcctgca cccatcacta aattagagca agctatctcg attttttgtc cattttttct
    23641 gccgttaacg ataatttttt ccattatgct tccaccccac tcgcggcaat tttatcgact
    23701 acaagtgttg tattcgaatc ttttacgagt gttgcaggaa tcgctactgt cggttctttt
    23761 tccactactt gtttcacgat atcaattttt ttctcgccag ttgctactaa atatatttct
    23821 ttcgccgcta aaatttgttg cataccaaga gaaattccgt gtgttaatgg caaatctgta
    23881 tcaaaatatt tgctcatgac gcgtttcgtt acatcatcaa gttccacgac atgacagttc
    23941 acatctactg gcacaaatgg ctcgttgaag ccaatatgcc cattaagtcc aatccccagc
    24001 aaaataaaat ccattccgcc acggtcgtcg ataaacttgt ctacacgagc gcattcatcc
    24061 gttaagctcg ttgctttccc atcgaaaaag caaatttgtt cactagaaac atttttcaaa
    24121 cggtcgaaaa atgcatcata gagtgtttgg atacagctac cttttgtttc gcgtccaagg
    24181 ccaacccatt catccaaacc aacaaattgc gtctcactaa aatctacttc gcccgtttga
    24241 ttcgctttaa taagcgcttc tattgttagt aaaggcgtgt ccccaccagc gatacaaatt
    24301 aaacttgcag gtttttcttt taccaattca atgattcttt ggctcactgt ttgcgccacg
    24361 agttgttcac tttcattaat aattaatttc attttaaaat caacctttct tattagaaat
    24421 ccaagtctag tgcatcgtgc gcagcttggc gttctgatac aacttcttct tctttaatca
    24481 agctcttctc atacattttg aagaacggat agtacataca aacggctgct gcgagaacga
    24541 agatgattaa aataatcgcg cgccaatcca tcgtcgccaa atactgcgcg agtggaatcg
    24601 gtgtcccgcc aacattcgca atcggcggac gaacccaacc aaagtggaac acaaaccatt
    24661 gccctactgc taaaattggc gttccaagta cgaatggaat aaacaaatac ggattaaaac
    24721 agattggcaa accgaataca actggttcag aaattgtgaa aatcgctgga acaaccaaca
    24781 cttttccgac cgcttttaat tctcttgatt tactaaatag cgcaaggata actaatgcac
    24841 ctgtaatacc agaaccagag aagcccatga agtaatccca gaagtttggc gcaaatacgt
    24901 gcggaattgg ttctcctgcc gcatatgcag ccgcgttcgc tcctaaatat tgtgtcataa
    24961 atggaagcac aaaaccaatc aaaatcgcat aaccatttag accgataaac cagaatagca
    25021 tttcaaggaa acaaataagg aaaaccgcat aaggcgtatc aatactatta atcgccggag
    25081 ctagcatcgt cgtaaaggct tccggaatga tttgaccgct agtgacactt tgcattaaaa
    25141 tacttagtcc aacagcactg aatagcagta caactagtgg aataattgct tcaaaagtag
    25201 tcgcaatccc cgccggtaac cctttaattc gaatcgtaat attttttcta ataaataaac
    25261 cgataagttc tacagaaatc agcgctgcaa aaatggcgat aaatagccct cttgaatcca
    25321 gaaattctgt attaagcacc ccgtcaacca ttttcgtatt gaggatgagc gtcaccataa
    25381 cagctgccat cacactatgt aacacaggta ctttcatttg ttttgcgtgg ctataggaaa
    25441 ttgttatagc cgcataaatc gatagtaatc caaacgtaaa ttgaaacggt aagttaagcg
    25501 ctgctgcatt ttgaacaaag aattctttca caacagaacc tgctggaaac atatttccga
    25561 ttgctgaaat aatcagcgaa aatgatccaa taattaaaac cgagatcaaa gcaatcatcc
    25621 cattttttat tgaggaaata tgacgttgtt tttcaattct agctgcgaca ggttcaaaat
    25681 atttctccat aaaagcaata aaacggttca taaaagattg tttgttttta ctcgacatgt
    25741 tgtttccctc cactttttta tttgttcagt ttaagaataa ttgcgtcttt taaaatgttt
    25801 gcgccattaa cagtgccgta atctttcgta tcgatgactt gaattggttt attatattcc
    25861 gccgcaattt cacttaaatg tttaagttga tgtttgattt gaggaccgac taaaataacg
    25921 tcaaagtctt caatatgctc gcgtaattct cctgctggat gcgcctcaat tttcacatct
    25981 gtattcgtga gcttttcact gttttgggcg atttccttca tttttgtaac cattacccct
    26041 gtagatgcgc ctaagttaca cactaaaagt acatgtaatt gattgatttc catttacttt
    26101 tcctcctctt ttcttaatgt tttaatctct tgatgcattt caatcatttc tcgaattaaa
    26161 gtcgatgcta agatggtatt cattaaagta tcttgcgcat gtacgagtaa aacggaaaaa
    26221 tttgcttgtt cccctcttgt ttcttgaatc agcatttccg tttgtacttt gtgcgcttca
    26281 atcattaggt catctgcttc ttttaaaagt tgttctacta attctgaatc tgattctttt
    26341 gcggcctgta atgcttcaat taatttagaa aacgaatccc ccgccagtga aattaatgaa
    26401 aacgatattt tttctatgtc cattatgaaa ccctctctca ttcaaagata gccgacttaa
    26461 cgtaatgata aatatcacgt tttgagctag ccattttaat tttttgcatt ttttcctcgt
    26521 ccagcgctaa cttcattaat tgttccacga tcaagtgtgc ctcttttgtt tttaaagcta
    26581 aggtgaaaat gacatgaacc ggctcctcgt atctatcgaa aaacatgatg ccatcctcaa
    26641 taatcgtcac tccaatgcca tccatcaaaa caccgtcact tgcccccgca tgtgcaatga
    26701 caacacctgg cgcaacgacc atatacggcc cgtatgcttt taagttatga atgatttttt
    26761 catgataact cggctcaatg acttctaaat gctccaaaca ttttgttcca agcttaattg
    26821 cctgcctcca tgttgggcat gtttcttcca taacaatcgc ttcttctgta aattgaaacg
    26881 gtggtataag cctttttggt gtttcacctt catccgatat aagcgcttcc aataaatcga
    26941 attctaattt acttaaatta gtaatttgcg tgttttcgcc aataatcgct aaaatcttac
    27001 tgaacttatt aataatctgt ttatcacttt tgatgagttt catccgtaaa tgcttttgca
    27061 gtaattccat atcctctttt tgcaaatagc tatgaatccg gagtactttt gcgtcttgca
    27121 tatctggtaa atccactgtg ctaatcacaa aatcaaaatc agccatcatc gcgcgtttga
    27181 actttctgag gccaattgtt tgaatcgatt caaactcaaa catacgcttt aactgaatcg
    27241 caatcatttt tgaaacagcg acaccttccg ggcaaataat cagcaaattc ggcttcattt
    27301 caactgtttg tttattgcgt tgtacctcag atgcaaaata aatagctaaa aatgaaattt
    27361 cttgagagct gacagaaatc ggcaataacg gcttgagtgc atccaaactc tccttcacac
    27421 gcataaaaat ttctcgatta tcgcgcataa attcattaaa aatcggattc tcgatagtaa
    27481 ctccggcgcg aacacgccta atcattaatt taatgtgtgc tttgatttgc gtgaaaaaat
    27541 ccgtatcgcc atgcacaaaa tccacttgat aaatttcacc cattttttcg caaatacctg
    27601 ttacaaatgc ttcaattacc gcctcatctt cacgcccata ttgatactgc ttcaaagacc
    27661 caataattgt tgctaacgcc tgatcaagct catctttaat cataaaatct gctgtaaact
    27721 gaaaatccgg tttggcttca tgctgcttca gtaaaatcgc aattagcgtt aagtaaagct
    27781 gctcatccat cgcacgtgtc atattctcct ccaccgaatg cgcctcacga ttcacctcct
    27841 gcaaaatctc cagttcaaaa agattataaa aaaataactc gcctttttta gataagctat
    27901 tttccgaatc taaaaactga taaaattcgc ggatattaat aaaacgcaag aaacttctag
    27961 caaaaagcga tgttttcgta attaaatttc cagtcactag aaagccatgc ctaggctgat
    28021 gcgataaatc taaattattt aaaaaaagtt ctccttcaat agcacgtaga tgatttagca
    28081 cagaggatct ggaaataaac aggacttctt caaaataagt aaccgggagc acttcttcac
    28141 ttaaaagcag ttttagcagt aaaaattgct gcacttcttc ttggctgtaa cgatattttt
    28201 tcggcgtaat ttgttgctta aatttacgca caaccggatt tacgatattc ttttccggaa
    28261 gtagcacccc tttccttgta tgtctgataa gagctggtaa tgtttgctca tggagaaaaa
    28321 tatcgatttt ttccaaacta taacgaacac ttcgctccga acaaccaagc gcgttagaaa
    28381 tataaccaat atttttaaaa tcttcctgct ccataagaaa atctaaaatt tgaatacact
    28441 gctgatttag tttcatcagg tatcactcct ctttctaaat tcaatttatc attttcatga
    28501 tagggcttac aataagctat atagctattt ttgtcagata cgtagggaca aaaaaactat
    28561 ccattttact ataactggaa aaaaaccttg ccggaatagg tcggagctac tgaaagcaca
    28621 aaaaaagcct tctacattca ctgtaaaagg cctattattt gaactattta tcttttttca
    28681 tatagaaagt taaaataatt gcgatgaaaa ccattaaaaa tccaacaatc ggggtataac
    28741 ccaaaccaat atattccgta actaatccgc caataaatgc acctactgct atcccaacat
    28801 taaaagctga aatattaagt gccgaagcca tgctcaccgt ttctggcaaa taccgctctg
    28861 ccaattgcac gacatacaac tgcaaaccag acacattcat aaaggcaaaa aatcccatca
    28921 acataatagt cattaatcca aaaatcgcgt tggtcgatgt aaattgaagt aataataacg
    28981 taatcccttg caaactaaac atcacgaaca gtgccttagc cgggcgctca ttcgcaaaat
    29041 gcccaccaat cgtattccca atcgcaacca tcacaccata cacaataagt aaaataacaa
    29101 tcatgcttgt agaatagccc attccgctaa acatcggcga caaatacgta taaaccacaa
    29161 aagtaccacc atagccaaac gctgtcatga gtaacaccat cacgattttt ttattaacta
    29221 ataattgtcc aatcgcttta aatgaaatac tttttccatt ggataagttt ttcggaacga
    29281 ggaaaaaatt agcaataatc gcaatcacgc caatcgcaac aataaacagg aatgacatcc
    29341 gccaaccaaa tagttgcccg ataaacgtcc caagcggcac ccctgtcaca gtcgccaccg
    29401 tcaaccctgt aaacatcacc gcaatcgcac tagctcgttt gctcggatga accacatcgg
    29461 cagcgataac agaagcaatc gacataaaca ccccatgcgc aaacgccgca acaacacgcc
    29521 cagtaaggag cattccaaaa ctcacagcaa atgccgagac aagattccct atcagaaaca
    29581 cgagcatgac taataataac aaatttttac gattcatctt cgccgtcata gttgttaaaa
    29641 ccggcgctcc aaccatcaca ccaagcgcat atatcgatac agttaaacca gccgtactaa
    29701 tcgacacacc catactagaa gaaatcagcg gaagcagtcc cacactaata aattctgttg
    29761 aaccaatccc aaacgcacta atcgctagcg ccaaaagtgt caaattagga tttacttttt
    29821 tcatatccac atcgttcccc cctaaaaaat tgcaaattgt ttcgttctgt tatacagtat
    29881 cttatatacc gtacagaata acaagaaggt acttaaaagt catatagata ctaaaaagtg
    29941 cctataggag gattacgatg actaaagtat ataatatcgg cgtcgaagct acactagaag
    30001 ttataggcgg aaaatggaaa ccagtcatcc tttgccattt acgcgaaggc aaaaaacgaa
    30061 ctggcgaatt aaaacgactc atccccaaca tcacacaaaa aatgctcaca caacaattgc
    30121 gcgagctgga aaaatccggg gttattgtcc gcaaagtata tgaacaaatc ccaccaaaag
    30181 tcgagtattc attgagtgaa tacggcgaat cgttgtcgga gattttgaac aaactttgct
    30241 tatggggcga gaatcatgtg gatcttttgc tcactaagaa tgaagatatt attttgttga
    30301 aacgagatta atagaaaaat agccacctct cgggtggcta tttttaatga ttccctatac
    30361 ttaatatccc tgaatcaatt tcttctccat ctaaaaacca atacccatga taatccccac
    30421 tgagcgctgt aaacggaact ggtgtcttcc ctacttccgc tacctttcta agtaagtaat
    30481 tccgcaaaat ccaaccatca tttaaagaac gttgctttaa attcaaaatc cgttctattt
    30541 ttacttcact tgtatttagt tctttcgcta cttcggcaat tgttaaattc gcaagcgcca
    30601 aattctccgc aaactcactt ttcgttgctt tgatttgttc ttttgataaa gtcatttttc
    30661 agttccacct tttataaatg taataatttt tcagcatttt cgtgagcgat ttttgctttt
    30721 acttcatccg ttaaatcaag cgtatctagg aaagtcctag cattttctgg ttttacaaaa
    30781 ggataatcta gcgcataaat aagatgattt tcatctaatt catttaataa aaacttccat
    30841 tcattttggt ataataagcc gcttggtgtc acatacacat tcgtccggta gtaatcagaa
    30901 attttccgtt caagcgttgt ccagtggccg agtgtattgt ccattctgtt taaaaacatt
    30961 ggcaccattt cacctaaatg acctgtgatg atttttaaat tcggtaattt atcaaatata
    31021 cctgaaagaa tcatccgcac gacttgaatg ccaacatcca tatgccaacc aaaaccagca
    31081 gatgaaaata cccctgtcac cacatcagac caagcatcac tggcaaaata ttgttctgta
    31141 atagtttctg ggataaacga tggatggaac gaaatcggta catctagttt ctccgccatt
    31201 tcgaaaatcg gataataaaa gcgattatca aaatatttgt tttcaaactg cccttttaca
    31261 agtgcacctt tgaaaccaag ttcttctacg gctcttttta attcaatagc agcatcttct
    31321 ggtgatccta ctggtaagac agcaaaaccg gcaaatcgcg taggattttg ttgaatcacc
    31381 ttcgctagtt catcattagc tcgcttacac agagctaccg aaatttttgg atctaagttt
    31441 tgcggagaac tatttccata agagagtact tggatatcaa taccatgttg gtccataaat
    31501 gctaaacgtt tttctgtatc ttgcatttcc gctgctgaag gaagttcctt ttgcatatat
    31561 tgaaacattt ccggactaac ctgtccactt actaaatttc cagtgacttt gttgatttca
    31621 ttcgtaatga cttcggattc aaaatgttct tctattgtta taattttcat gttcattcct
    31681 ccttaagtaa acaatacccc tttttaagtt gctaaaatag ccacatttcg atacactaat
    31741 aacaattatg tatcataaaa aggagagttt tatgaataac tacgtaaaag tgcatcaacc
    31801 gttgaatgtt gatttacgta cacaaaaaac acaaaccaaa ctatatacgg ttttggagag
    31861 gttttatgtg gaaggtagaa catttgaatc aatatctata aaagatttat gcgaacaagc
    31921 gcgagtatca cgagccactt tttatcgtca tcatgaggag attattcaag tgattgaagt
    31981 ccagattttg cgaaccatgc agtacttctc tttggaattc gaccaaatta ttttaacaaa
    32041 agaaaatatc caacgcttaa tcctccgaac tattcaaaaa aatccgcttt tatttcaagc
    32101 gattttttgg agccgggcag aaaatatttt tgtcgatgta gtgtctggag aaatacttcg
    32161 aattagtttg ttaaaagaag tttccttttc agatagtcac tttattccta attattttgc
    32221 taggatgatt ttaagtttag cgacagaaat tcagcaatcg aataaagact atacgaatgg
    32281 tcaattagtt gaattgatac aggaggcagc tcgcttttta caaaaataaa aagagcctaa
    32341 gttcccttag actctctcat ttaatcaatc attttacgga aattcaaccg tttatttaat
    32401 agatacatta gcggaatccc gacacccatt acgatgaatt cacttgcggc tgttgttgcc
    32461 caagtaatta ggaacggtaa gtcaaaaaca attactaact cccaagcgat aattgccatc
    32521 gttagcgaga aaagaatcgt attaataatc atccgcggaa taattccttt aacgtattta
    32581 gaaattccaa tcattagtaa aagcgagata gccgattgtg ctacgccaaa aactaaatca
    32641 atccacccta atccagaaaa gaataaattc gtaataaaca cacctacgat aataccccaa
    32701 aagtattttt tattaaagac gattagatgg ttaaagattt ctggtattct aaattgtaat
    32761 gccataaacc caattggtgc aacaatcata ccgagcacta catacagtgc ggcgataatt
    32821 gcattcaccg tcaaaatttt cattttcatt atttttcctc ctagtttttt tacgtgggat
    32881 ggtatgaatg aaccacgtgt ggcaattttg ccaacatgct attttctcat atttggaagt
    32941 taatgtaaat gaattattgc acataaaaaa cggctactta gagtatagcc gtttttttat
    33001 ctgctatgtt tcccattcaa ccttttgcct acaaaataaa gaattattga taaaattact
    33061 aatgaaataa atcctatatt tttagggaga atttctttaa taacaatgaa gtaagtccaa
    33121 cctaaaacga tgattgctac tacaatatat tcgataattt tgtttatctt c
//
LOCUS       DASEAA010000010        32663 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.010, whole genome shotgun sequence.
ACCESSION   DASEAA010000010 DASEAA010000000
VERSION     DASEAA010000010.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 32663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 32663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..32663
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.010"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            33..491
                     /locus_tag="U0342_000417"
     CDS             33..491
                     /locus_tag="U0342_000417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421779.1"
                     /translation="MLNFEEKKALIESIDGFELHEISMGRINVHYPASKRDKKIIVKH
                     LHPNGNAFVYAPFLEVEPLDKQGYVNVKDYSENEIRVLLLEAKEFMDSDEDGYKEGLT
                     KIYQDNSGEKLSLVYENKMWVIFTGENLEAVFPTLESAEGYLLDEGFFEA"
     gene            508..2250
                     /gene="ade"
                     /locus_tag="U0342_000418"
     CDS             508..2250
                     /gene="ade"
                     /locus_tag="U0342_000418"
                     /EC_number="3.5.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenine deaminase"
                     /protein_id="HEM2421780.1"
                     /translation="MVENLEQLQERVAVSDGRAKADLVIKNGRIINVFSGEIMDGDIA
                     IKNGYIAGIGNFPDAEKIIDAAGAFIAPGFIDAHVHVESAMVTPAEFARVLLPNGVTT
                     IVTDPHEIANVAGEKGIEFMLEDAKGVPIDMFVMLPSSVPATEGEHNGETLHAEKLHP
                     LYRHEKVIGLAEVMDFPSVAKGSSDILTKIIDAKKEGGRIDGHGAGLTSADLNNYLAV
                     GIRTDHESTTAKEATDRLRAGMFVMLREGTVGRDLLQTIPAVSEKNSHRFCFCTDDKL
                     INDLITEGSINYNIRLAIKNGIDPITAIQMATINAANCHNLPYLGAVAAGYQADIVFL
                     TDIETVEISKVLKNGEVVVDNGVRHEAAFKQQAAVPFVSPPINHHVSLQDLALPLTKE
                     TCYVIGMQPNSLFTEKRIEQVAIQDGKFVPTVENDLLKMAVVERHHDTGCVGLGIVKG
                     FGLTEGAIATTVAHDSHNIVAVGISDEAMKAAIDHITQTGGGIAVVNGAGQVLHDLAL
                     PIAGLLSDKSYEEVENDLAGLLNAFKQISTADGFDPFLTLSFLTLPVIPELKLTDQGL
                     FDFATFQIISNEVN"
     gene            2272..3312
                     /locus_tag="U0342_000419"
     CDS             2272..3312
                     /locus_tag="U0342_000419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2421781.1"
                     /translation="MNWWSYIKDKRFFLLFFCSIMFFVGVLISIDPNSKLTLGNFIYL
                     YVFVLVFLLSYLVLGYFFKYNYWREMKELVSGEIEENIIELLPKPRTREQAFFNQLMA
                     KKHKEELRTISKLQDKQQEYHDFILYWVHEVKTPVVASKMLINNPDLNDTETIFKQID
                     EELTTIDKLVMQALYFSRLDTFSKDYFIQEQNLGVVVRESVKRHSKLFIGKKMKLDLQ
                     NVDMDVRTDSKWLGFILDQILSNALKYTKSSGEVKIWCDTEASEKKVLHIKDNGRGIK
                     EEDLPRVFEQGFTGNIGRQEKKATGMGLYLAKQMAKKLGHEICIQSESGVGTEVKIYF
                     EQKDDYLLIAKD"
     misc_binding    3412..3652
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            3710..4351
                     /locus_tag="U0342_000420"
     CDS             3710..4351
                     /locus_tag="U0342_000420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM2421782.1"
                     /translation="MDYITEILPALLDGAKTTLLVFAVTLVCSIPLGAVVAVGNISKI
                     APLKFILNIYIWIMRGTPLLLQLIFIYYGLPIIGVVFDRMDAVFIAFILNYAAYFAEI
                     FRGGFLSIENGQYESAKVLGLTYGQTLQKIVLPQVVKRVLPAIGNEVINLVKDSSLVY
                     ILGIGDLLRAGKIAMSRDVTLIPLVLVAAIYLALTAILTILFKQLEKRFSYYK"
     gene            4362..5009
                     /locus_tag="U0342_000421"
     CDS             4362..5009
                     /locus_tag="U0342_000421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465264.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2421783.1"
                     /translation="MLEIKNLSKKFDQKTILDNVNISLQDGEILSIVGPSGGGKTTLL
                     RCISGLEKMDTGEIFIDEEKIDPMSRKDVENTIGVVFQEFHLFPHLSVLDNLILAPTL
                     ARKTKKADAVKEAERLLGLLDLADKANSMPYQLSGGQKQRVAIARALAMNPKVLLFDE
                     PTSALDPDLRDHVAALILSLKKVGITQIIVTHDHTFAEKVADQMMEVEPLKKEAI"
     gene            5011..5826
                     /locus_tag="U0342_000422"
     CDS             5011..5826
                     /locus_tag="U0342_000422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2421784.1"
                     /translation="MKKGLLITVMLMVMLALGACSSGESKEDQWSRIKKDKEVVIGLD
                     DSFVPMGFRDKDDNLVGFDIDLAKAVFAEYGIKAKFTPIDWTMKESELKNGSIDLIWN
                     GYTVTDARKKQVAFSQPYMKNEQVLVTLKSSNINQFSDMKNKTLGAQNGASSIDDMAK
                     KTEVLTDIINNNEPELYDTFDTAFIDLNNKRIDGLIIDEVYARYYIDKQKNKDDYNII
                     TGGFDATDFAVGMRKSDKELQTKINEAFEKLYKEGKMQEISKKWFGDDEIAKQ"
     gene            5918..7024
                     /locus_tag="U0342_000423"
     CDS             5918..7024
                     /locus_tag="U0342_000423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase family
                     protein"
                     /protein_id="HEM2421785.1"
                     /translation="MLNKELIVRGAPQEYLCQVGAWDTLPTHLERRGLKNVLVVRGNA
                     SWEVAKKKFPVLSTVTSTFEVYNGGSTYEERDRLVAIMETNKMDAIIAVGGGKIADVC
                     KATAAVLRLPVIILPTLASTCAAYTPLSVMYDEEGAMIRYDVFASSNALLLIDPEMIL
                     DSPKELLVAGIGDTLAKWYEADVIINSLPTKSVEIEIAHFAAKMCRDNLLQYSEEALA
                     AMDKQVLNEAFVKIIETNILVGGMVGGFGDDYGRCAGAHSIHDALTMVPETHHLLHGN
                     KVAYGILVQLVIENRWDEIERLLPFYSELGLPMSLYDMGLATLAEETLVAVSKRATEP
                     HETIHMMPGEMTADVVLNAMKQLEDSMAMKRVAK"
     gene            7027..7545
                     /locus_tag="U0342_000424"
     CDS             7027..7545
                     /locus_tag="U0342_000424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM2421786.1"
                     /translation="MIIRKEQPQDYEAIRRVNEEAFKGTVEADLIESIRTSDYYQPGL
                     SLVAEAEDGLIVGYIMFSEISLEAAGRSRFILALAPLAVLPAYQGTRVGSRLMEEGIR
                     LSREKAYPAIAVLGHADYYPRFGFIPSEQFAIPAPFDVPAEYFMLLELYDGSLENLAG
                     TIHYPAAFSENN"
     gene            complement(7542..8429)
                     /locus_tag="U0342_000425"
     CDS             complement(7542..8429)
                     /locus_tag="U0342_000425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2421787.1"
                     /translation="MELRQLKYFMEVARVEHMTKASENLHVAQSAVSRQITKLEEELG
                     VHLFDRVGRNMQLTSVGQDFLKQAAIALNELQKAEALVTEYTDPAKGTVRVGLPNSLS
                     TKVLPSVISTFREKYPQITYQFMEGTNEELTEMLLSGVLDMTFLSPVPESSEQIEAIR
                     FFDEKLKLIVPKTHPLAENFTVSLKELASEKFVLYPEDFDLYKIVTKAANKKGFEPQI
                     AFQSRDFYTIQGLVGAGLGISILPEMILDGAIFKETKSIALRDKELRRSVGIITTKKR
                     NLSPSENLFRSFIISFFSN"
     gene            8622..13214
                     /gene="gltB"
                     /locus_tag="U0342_000426"
     CDS             8622..13214
                     /gene="gltB"
                     /locus_tag="U0342_000426"
                     /EC_number="1.4.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase large subunit"
                     /protein_id="HEM2421788.1"
                     /translation="MKQTNLPKKHGLYNPENEHDACGIGFVANIKKISSHKIVEQGIH
                     MLCQLKHRGGEVGGDTGDGAGILLEISDSFFRRECSKLGINLPEKYHYAVGMFNFPQN
                     KTERECLMAETEKLIASEGQTFLGWRKLPTDVTKVGAGARKTEPAIYQLFIQKNAKLD
                     EAGFERALYLIRKQIEKFAATSKQITETFYVPSLSTRTVIFKGMLLPEQINQYYLDLA
                     DPAYVSAFALVHSRFSTNTFPSWERAHPYRYLIHNGEINTQRGNVNWMKAREKRAESD
                     LLGEDLAKLLPIIDESGSDSATLDNALEFLVQAGRSLPHAAMMLIPEPWDKNPHMTDP
                     KRAFYEYHSTLMEPWDGPTSISFTNGRVIGTILDRNGLRPARYYETKDHTIIYSSETG
                     VVPVDSSEIIRKETVGAGTMLLIDLEEGRIVTDAELKEELTTEKPYREWLEAEMTEIA
                     DLATADLHYEAMDKSERFKKQRAFGYTQDELNKILIPMVTEKKDPMGAMGYDAPLAVL
                     SQRPQVLFNYFKQLFAQVTNPPIDGIREETVTSAMTLLGDEGNILNPTAQNANRIRLK
                     TPILSRKEFAALEQQTKFAQPTVTLPILFKAEERDGLEARLESLFVEADEKIAAGAEL
                     LILSDDGVNADWIGIPSLLAVSGLHHHLVKAGTRTQVSIVVKTAEARDVHQCALLIGY
                     GADAVFPSLAIDTFDGLIKEGRMKGFTLDEAESRYIEAITDGILKIMSKMGISTVQSY
                     RGAQIFEAIGIGDDVIKHYFPGTASQIGGIPLEVIAQEAWLRHREAYHDVGYQSFTLN
                     TGGEYQWRSNGEYHVYNPLAIHSLQQATRENDRETYNLYSDLMQNQNNAFLRGLLTFT
                     SDRKPIPLDEVEPAEAIFKRFKSGAMSYGSISQEAHEALAIAMNRIGGKSNSGEGGEN
                     PNRFTPDENGDWRRSAIKQIASGRFGVTSHYLVNAEELQIKMAQGAKPGEGGHLPGNK
                     VYPWISKTRGSTTGVGLISPPPHHDIYSIEDLSQLIFDLKNANQNARINVKLVSKTGI
                     GTIAAGVAKGNADVILVSGYEGGTGAAARTSIRHAGVPWEIGLAETHQTLLLNGLRNK
                     VVVETDGKLMTGKDVLVAAMLGAEEFGFATAPLVTLGCVMMRVCHLDTCPVGVATQNP
                     ELRKKFSGSADYVVNFFHFIVAEMREMMAELGFRSLTEIIGHKEFLTTHEKKEAHWKA
                     KYIDFSNMLYSDDFYKNQVQYCTKQQDHKIDQTLDMRELVPLIQPALENGEKVTGTFA
                     VRNVDRAIGTVAGSFISKKYGAEGLPEDTISLDFVGSAGQSFGAYTPLGMTLRIHGDA
                     NDYFGKGLSGGKLIVSPDAKTPIKPHDSAIVGNVTLYGATGGYAYVHGKAGARFAVRN
                     SGATAVVEGIGDNGCEYMTGGAVVVLGEIGENFAAGMSGGVAYLYTNNKQATTAKINH
                     ELVNSRSTLNTSELTKLKQLIEQHANLTGSNFAKDILQNWEAEKANFIFVIPNEYEMM
                     LTRITTLEQTGKTHDEAELQAFYEHKDGKLVAGVAK"
     gene            13229..14698
                     /locus_tag="U0342_000427"
     CDS             13229..14698
                     /locus_tag="U0342_000427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate synthase subunit beta"
                     /protein_id="HEM2421789.1"
                     /translation="MGKATGFMEYDRIPSPGRDPKSRTRDWNEYSLPMPVADLTLQAA
                     RCMDCGVPFCSVGMEIKNGVSGCPLHNLIPEWNDAVYRGDWYEALQLLLKTNNFPEFT
                     GRICPAPCEGGCTVAISEPAVGIKSIEKAIIDRGFEEGWIKPAPPKKRTGKRIAVIGS
                     GPAGLACADQLNKAGHSVTVIEKSDRIGGLLMYGIPTMKLEKEQVTRRVNLMAEEGIE
                     FVTGVAAGTDVTFAELREEYDSIVLATGAGNARDIPLAGRDAVGIHFAVPYLSQSTRD
                     NLDNGGVQTLSAKGKNVVIIGGGDTGADCVATALRQGAKSIYQFGIQDKLPELRDGEN
                     PWPQYPRVFKMDYAHEEAEAVYGRDPREYLINTTSFEKDEAGNLIGLHTVEVEENKAE
                     RKYTPVEGSEKYFEVDMVLIAIGFAGTTEDIFTNFGVGKTERHTIDAAKGFYRTSEEG
                     VFACGDARHGQSLVVTAIAEGREAAREVDFYLMGETFLP"
     gene            complement(14743..15573)
                     /locus_tag="U0342_000428"
     CDS             complement(14743..15573)
                     /locus_tag="U0342_000428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2421790.1"
                     /translation="MNQYRQKSRGAQIAVITILTVGGFFMILPFIWMVLSSLKTDAEI
                     LKIPPTIWPETFTLDNFTKLFTEMDFAIYLKNTLIIVFFSFFGLFLNAMAGYGFAKFK
                     FKGKNKLFYLVLATMMIPGQVTMIPVYLLLNAAGLTNTMTGIVLPGLVGAFGIFLFRQ
                     FMSTISDDLLEAARLDGASEFYIFWRIVIPISRPVLAVQGILTFIAGWNSFLWPLIIA
                     NDEKFYTLSVGLQLLKGQYGSNYALQMAGATFMVIPIILIFMTFQKYILKGFNVSGMK
                     "
     gene            complement(15591..16484)
                     /locus_tag="U0342_000429"
     CDS             complement(15591..16484)
                     /locus_tag="U0342_000429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2421791.1"
                     /translation="MKQFLNKNTPYLFISPALFLLLLFSLLPILLAFVISFTDIDLVG
                     LADYSKINFVGVDNYVNIMQDPVFLKSIFNTLFYVIIGVPLVIVCSLGIALMINFSQA
                     KIFQFFRLIFYTPSITNVVAVAVVWSYLYNPRFGLLNYLLSFLDLGPVPWLQDPTIAK
                     LSLIILAVWRAIGVNMIIFLAALQGIPREYYEAASLDGANSRQQLFKITVPMLRFAIF
                     FVTVTTMIGWLQFFEEPFVMTEGGPLDSTNSVALFIYQNGFQLSKFGYAAAGSFILFI
                     AIIIITIIQFRIQRKNNDGDI"
     gene            complement(16545..17789)
                     /locus_tag="U0342_000430"
     CDS             complement(16545..17789)
                     /locus_tag="U0342_000430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2421792.1"
                     /translation="MKKKMFVVLALVLSLSLVLMACGGSKDDANSGDSKVLNVWAMGD
                     EAKSLKELAQKFTKDTGIEVKVQVIPWANAHDKLLTAVASKSGPDVVQMGTTWMPEFV
                     EAGALLDITKDVEKSKNMNSDLFFPGSVKTTQFDGKTYGVPWYAETRVLFYRTDLLKK
                     VGYNEAPKTWDELSDAALKLSKRGKDMYGFAIDPNEQTTGFIFGRQNGSPLFDKDGQP
                     VFNKKPFVDTVSYLDSFIKNGSAPDTDLGLDASQSFGGDGIVPMFMSGPWMVNTLKDT
                     APDIDGKWATAVLPKKENNESSLGGANLSIFKYSDKKDDALKFMDYMSQPDVQLSWLK
                     DTNSMPARMDAWEDDMLKNDPYYKVFGEQMKTAEPMPLIPQFEEIAQLYGKSWEQIYR
                     GGADVQTQMDTFNDQVEALLKK"
     gene            18218..20389
                     /locus_tag="U0342_000431"
     CDS             18218..20389
                     /locus_tag="U0342_000431"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEM2421793.1"
                     /translation="MKQEKVQDLVNQMTLDEKIAQCLQLSPFLFKGTNKNAELTGPLL
                     QEMKLTDAHTENAGSVLGSSSALDMIGIQEAYLKTNRLGIPLVFMADVIHGYKTVFPI
                     PLALGCSFDRETVRVMAEVSALEATADGHHVTFSPMLDLVRDPRWGRVMESTGEDPFL
                     NSELGKAMVDGYQGDASKLHENLEQMAACVKHFAAYGAAEAGLEYNTVNMSTRELYQN
                     YLPAYNAAIQAGAKLVMTAFNVVDGIPATMNKWLNRDVLRDEMGFDGVLISDWGAVAE
                     VINHGTARNPKEAAQFSMEAGVDLEMMTTCYIHELKGLIEEGQLSESLLDEAVLRMLT
                     LKNDLGLFEDPYRGLKNNDRTKDILTDDSRGKARAAGIESAVLLENKNRLLPLAKEAK
                     IALVGPLATSPDILGGWNVYGEEKDGINVETGLREVFETVEVVSTEYTELSEEDKVAV
                     KAAVENMDVVVLALGEKNEWGGEAGSLATIRLPEAQYELAKFVQTLGKPVVITLFNGR
                     PLEVKELAESSDALLELWFPGTEAGRVTADLLSGASNPSGKLSMSFPQTTGQIPVYYN
                     HLRTGRPQTPENKGERYVSHYLDIPNEPFYPFGYGKSYSEFELKTSSLPKELNLGESL
                     HVEVTIKNISDIAGKEVIQVYLQDVTASISRPVKELKAFEKVALQAGEEKTVRFELTS
                     EAFSFYNQQLEKVQEPGLHRVFVGTSSEDVDVFEVEVGGYV"
     gene            20386..23646
                     /locus_tag="U0342_000432"
     CDS             20386..23646
                     /locus_tag="U0342_000432"
                     /EC_number="2.4.1.333"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,2-beta-oligoglucan phosphorylase"
                     /protein_id="HEM2421794.1"
                     /translation="MTMLKEIKKADLSAAFYPSGELAWLKWKDIMLNQVIQNPLENRL
                     SQIYVRAHLGDKIEIYPLLSRDAEVGFNENGVEYRGVVGPFRYSVQMHFHTRGWFYDV
                     SVDGDLEFDFVYLQDLGLAEQAAVRTNEAYMSQYIDYHVTEGATGFTVQARQNQPQSE
                     RFPAVQIGALTKIVGYATDGFDIYGTNYKLTSELANLKEKSLPNRVYQYEFAQISLQT
                     ELFTNHGETSFYGYATENQPKASGAPIENLAELKSNISGQSYQTSTKATLNKHIGTPI
                     IGETISDNWLQENFPDRIQEEQQNGDLLSFFTPNYAHVVMREKEAELERPHGSILLDK
                     VDVLNPEATLSATTYMYGAFLSQLVAGNTNMNKWNSHARNPLNILQTSGLRIYIELDS
                     ELRLLGVPSVWETSTNYSTWYYQWNDDLITVKTTLTAESKEAFVTVHSEKGRSYKLVL
                     TNQVTMGTNEYDTTVKKEVKEGIVTYFPAEDSPILETYPALQFRVDGTYNELTDERYF
                     AKEYVGTAGLDVFVFEPSDKATFHVQAKLTDEFSEPTEDLEANNKVIRASYDELTAQF
                     HLNHQSTTAEKLNLTVYWYAHQMLVHYASPHGLEQYSGAAWGTRDVSQGPFEFFLATG
                     NKAVLRKLVLTIFSHQYQDTGDWPQWFMFDKYTSIQQEESHGDVIVWPLKIIGDYMEM
                     SGDTGILEEAIPFVDRESKTFTKEQGTLLEHIELAVETIEARFMKGTALSNYGDGDWD
                     DTLQPANAQLKKNMVSSWTVALTYQTFKRLAAFLPVGEKYETLANNVQADFAKYMTND
                     TDVIPGFLYLEEGKAPVWMIHPEDKDTNIKYRLIPLTRSVISELVDKKQASRNFEIIG
                     EHLLHPDGVRLMSEPAHYAGGVSTHFKRAEQAANFGREVGLQYVHAHIRYIEALAKIG
                     DKSAWHMLDVINPINIKEVVPNAALRQSNTYFSSSDAAFLDRYQAQNEFSRVKEGSIP
                     VKGGWRIYSSGPGIYLHQLISSVLGIRQTEDALIFDPILPEELDGLECHIELDNYPLD
                     LTFESADEGSIVVNGEKQPVENEANLYRTGALVLPKKNLTTKCSQITIKFSKNNRL"
     gene            23694..24659
                     /locus_tag="U0342_000433"
     CDS             23694..24659
                     /locus_tag="U0342_000433"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2421795.1"
                     /translation="MVGIKDIAKKAGVSISTVSYALNGSPKVTEKTRKRIMTIANELN
                     YIPNMAARTLKTRETKIIGVYLTNYGGIFYGTLLEGLTQTLYKHGYELIACSGTKTHR
                     FLPEKMIDGAIILDANFPSSEIINYANRGHKLVVLDRELTHENVSQVLLDNKGGATLA
                     IDYLSTNFKGDFYVITGPEDSYDARVRLETAKQELARSGDKKVHIIEGDFSEESGEKA
                     AAIITENWKAPVSVFALNDNMAIGMYRYFAGTDLEIGKDVRIIGFDNTDISEYLVPRL
                     ATIEYSKYKWGAVAADKLVELLEGGKAENEIIYTTRISGPSVSNN"
     gene            24719..25702
                     /locus_tag="U0342_000434"
     CDS             24719..25702
                     /locus_tag="U0342_000434"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2421796.1"
                     /translation="MKLGIMGTNWITDSFIEGAINSGEWNLTAVYSRTEEKARAFGEK
                     YGDLTYFTDIEEMGKSDALDAVYIASPNALHYQHAVSLLKNKKHVIVEKPIFSTVAEL
                     EHAHQIARENNVFLFEAARHIQEPNFKRLQENIEKVGTIHGATLAYMKYSSRYDQVLN
                     GEEPNIFSLKFSGGSIVDLGVYPLYSAITLFGEPIKATYFATKLPTGVDGLGPIILEY
                     PTFNITIIQGKNSQSFLPSEIYGQKGTLIVDPLTGIEKITFYDNATKEETELAGPVVA
                     NDMQFEAAEFARIIEQSDRDTYEYLADLSLKVLRVSNELRHQNDIWFDAEK"
     gene            25836..27164
                     /locus_tag="U0342_000435"
     CDS             25836..27164
                     /locus_tag="U0342_000435"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2421797.1"
                     /translation="MTESNIPSFWAEKWQEHGYETPTEIQSAMYQPIKDGADVLAVSP
                     TGTGKTVAYALPTLEKIEAIPKTQWLVLAPSHELVMQITEVIRSWLPSDELTVISLIG
                     GANVKRQIEKLKKKPQIIVASPGRALELIKQKKIKMHEIKTITLDECDQLLRQENFKS
                     TLEIVESAVRDRQLTLVSATKLENPDMFFAQTENTPVMLEVTAKPEELTNVEHLYMDV
                     ESRDKATLLRRISHIKDMRGLVFVKDKPRMEILLEKLHYDKVKAAGIHGEIRKEKRKK
                     YLDDFKKGTLTYLIVTDVAARGLDIEDLPYVIHYDLAASEKEYTHRSGRTGRMGKSGT
                     VITFANPREIRTLKQYLTIHNLKGKQVRFYQGKLLDGAVPENKIAKKASRLPKQVQKG
                     KKDDVKKPFRKDKPTETAGKRKDKPTNASKPTRNNKPNKFNKKPTNFKRS"
     gene            27298..29976
                     /locus_tag="U0342_000436"
     CDS             27298..29976
                     /locus_tag="U0342_000436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HEM2421798.1"
                     /translation="MSSRKEEVLQLLNEKEEKVSAADVAELLQMDRANASRYLNDLFK
                     EKRIDKLPGKPVFYQAIKKAERASQHAGNIQESAFGRLIGSEDSLKVSIQQAKAAILY
                     PPNGLHSLILGRTGTGKSLFAECMYQFAKESETIPADAPFVSFNCADYAQNPQLLFGH
                     IFGVIKGAYTGAEETREGLLKKADGGILFLDEIHRLPPEGQEMLFTFIDKGEFRPLGE
                     SANVHHAQVQIIGATTESPDNFLLETFTRRIPMTITLPSLAERNLEERYQLVEFFLNQ
                     EATRLHQSIRVHRKALIAFLLYHASANVGQLQRDLKLACAKAFLHYKTKTANYILIEQ
                     DDLPIHVQKGLLHLKDEPEKLNRLIDVNKAIFKFVDTSDEFVETEDVHDVYHAIQEKA
                     DQLMKEGKDQSELEEALYVDVDQYFHNYMVQLPTHQTAKEIIAPAVWELTEKVYAMAE
                     EKLNRKYNEKMKFAFSLHLQSTIERVREQKHIIHPDLNNIRKKYPKEFQVAIDLSALI
                     EQELSIEIPFDEIGFLTMFLTEEVVDTSLSQENQVEVIVMMHGRSTATSMVETVQELL
                     SIESGIALDMPLTVEVKAMYEKLKQMVIKLNPVKGVLILSDMGSLTSFGNMLTEELGI
                     RTKTVTMVSTPVVLEAMRKASLGRGLEDIYQSCEQLFENKYKAHVLRAKPVKNAVIFT
                     CFTGEGVAEQLRKVVAPIIDETKIEIIVLQFLHKEAFRERIDQLMEEYNILAIMGSVA
                     FEYRDIPFFSALEVLSEGGLGIVSRILNDEVPYEKLIASLEGNLQAVSSAEQLVYFLR
                     KVISELQLQLNVILESGVDIGMILHLAFLIERVKLGAVDREFPDLNEFAKNHMVEMQI
                     TQQMMENVEIEYDIVIPQSEIAYLTQMMLSNQVEEN"
     gene            30136..30444
                     /locus_tag="U0342_000437"
     CDS             30136..30444
                     /locus_tag="U0342_000437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2421799.1"
                     /translation="MNNIMLVCSAGMSTSLLVKKMTEAIEKQQVDAAVIAVAEADFDK
                     YKGNVDVVLLAPQVRFLEKNLKRVLDPLGIPVAIINGIDYGTMDGEKVLNDALAMIEK
                     "
     gene            30514..30816
                     /locus_tag="U0342_000438"
     CDS             30514..30816
                     /locus_tag="U0342_000438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2421800.1"
                     /translation="MELEQTIMQLIVHGGNAKSDAMLAIEAAKKGDFDAADEQIKSAE
                     AALLEAHHSQTSLIQGEARGEKAEVSLLLVHAQDHLMNAITFKDLAKEIVDLYRSK"
     gene            30838..31926
                     /locus_tag="U0342_000439"
     CDS             30838..31926
                     /locus_tag="U0342_000439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF871 domain-containing protein"
                     /protein_id="HEM2421801.1"
                     /translation="MRKLGISVFPQHVALEESLEYIETAAKYGFSRIFTCLISANDEA
                     EFAKLETICKRAKELGFDVIADVDPTVFESLNITYKELDRFKELGLAGLRLDLGFSGS
                     EEAAMSFDDTDLKIELNISNGTRYVENILSYQANVGNIIGCHNFYPRKYTGLSREHFL
                     RTSKQFKDLNLRTAAFISSNSGEFGPWFVVDGGLPTMEEHRGVDITVQAKDLWNTGLI
                     DDVIVGNMFASEDELRALSELNRNELQLAVEFLDGATDVEKEIVLTQKHFNRGDASEY
                     VLRSTMTRVNFKQFDFPAHDTNTIAKGDVTIDNDGYERYKGEMQVALQEMENSGNTNI
                     VARIVPEERYLLDTILPWQHFRLVEKKK"
     gene            complement(32018..32602)
                     /locus_tag="U0342_000440"
     CDS             complement(32018..32602)
                     /locus_tag="U0342_000440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2421802.1"
                     /translation="MNNYEKRTLKKKTAIIQAALSLFGEQGFSDVSIKDIAALADVSQ
                     VSIYNYFGSKEALVGECASIIMQDTITLAEEILASEGTFTQKLERALQLCNAEINLSL
                     SKFISQEASKDAQFITLLVNNINALKNEIYMKYIAIGKQEKIIDNRLSDQSIQLFIEA
                     INGLGFTVPEEELEEKQAEIVQLFLYGLIGKCKE"
BASE COUNT        10760 a         5713 c         7023 g         9167 t
ORIGIN      
        1 aaagaaaatt aatttggggg aaaaataata ctatgttaaa ctttgaagaa aaaaaagcat
       61 taatagaatc tatcgacggc tttgaattac acgaaatttc tatgggccgt attaatgtac
      121 actatccagc aagtaaaaga gacaagaaaa tcatcgtcaa acatcttcat ccaaacggta
      181 atgcttttgt ttatgcacca tttctagagg tagagccact cgacaaacaa ggctatgtga
      241 atgtaaaaga ttactctgaa aatgaaatcc gcgtattact attagaagca aaagaattca
      301 tggatagtga cgaggatggc tataaagaag gtctaactaa aatatatcaa gacaatagtg
      361 gcgaaaaact ttcactagtg tatgaaaata aaatgtgggt tatttttacg ggggagaact
      421 tggaagcagt tttcccaacc cttgaaagcg cagaaggtta tttgcttgat gaaggttttt
      481 ttgaagctta attgacggag gcgagttttg gtggagaatt tagaacagct gcaagaacga
      541 gttgcagtaa gtgatggacg agcaaaagca gatttagtaa taaaaaatgg acgaataata
      601 aatgtgtttt caggagaaat aatggacgga gatattgcca tcaaaaatgg ttatattgct
      661 ggtattggca attttccaga tgcagaaaag ataatagatg ctgctggtgc cttcattgca
      721 cctggtttta ttgatgcaca tgtccacgtg gagagtgcga tggtcacacc tgctgagttt
      781 gcccgtgtct tactcccaaa tggtgttaca acgattgtta cagacccgca tgaaattgcc
      841 aatgtggctg gagaaaaagg aattgaattc atgctagaag atgccaaagg agtaccaata
      901 gacatgtttg tcatgctccc atcttctgtt cctgcaacgg aaggcgaaca taatggcgaa
      961 acattacatg ctgagaaact ccatccgctt tatagacatg aaaaagtaat cggccttgca
     1021 gaagtgatgg attttccatc tgtagcaaaa ggaagttcgg atattttaac caaaattatc
     1081 gatgctaaaa aagaaggcgg acgaattgat ggacatggag ctggcttaac gagcgctgat
     1141 ttgaataatt atttggctgt tggtattcgg acagatcatg aaagtactac tgctaaggaa
     1201 gcaacagacc gcttacgtgc cggaatgttt gttatgctac gcgagggaac tgtaggccgt
     1261 gatttacttc aaacaattcc tgcagtatct gaaaaaaata gccatcgttt ttgcttttgc
     1321 acagatgata aactaattaa tgatttaatt acggaaggat caattaacta taacattaga
     1381 ctggctatca aaaacggaat agacccaatt accgctatcc aaatggcaac tattaatgca
     1441 gctaattgtc ataatttgcc ataccttggt gcagttgctg caggatacca agcagatatt
     1501 gtttttctaa cagatataga aacagtagaa attagcaaag ttttgaaaaa tggagaagta
     1561 gtcgtggata atggtgttcg tcacgaagct gcatttaagc aacaagcggc agtaccattt
     1621 gtatctccac caattaatca tcatgtgagt ttacaagatt tagcattacc tttgaccaaa
     1681 gaaacgtgtt atgtaatcgg gatgcaaccc aatagtttat ttacagaaaa acgtatcgaa
     1741 caagtggcta ttcaagacgg taagtttgtt ccaaccgtgg aaaacgattt actcaaaatg
     1801 gcagttgtag agcgtcacca tgatactggt tgtgttggat taggcattgt aaaaggcttt
     1861 ggtttaacag aaggcgcaat tgctacgact gtcgcgcacg attctcataa tattgttgct
     1921 gttggcatta gtgatgaagc aatgaaagcg gctattgatc atattactca aacaggtggc
     1981 ggtattgctg tagtaaatgg agctggtcag gtacttcatg atttagccct tccaatcgct
     2041 ggattgctta gtgataaatc atacgaagaa gtggaaaacg atttagcggg tcttttaaat
     2101 gcctttaaac agattagtac ggctgatggt tttgatccat ttttaacatt gtcattctta
     2161 acattaccag tgattccaga attaaaatta accgatcaag ggttgtttga ttttgctacg
     2221 tttcaaatta tttcaaatga agtaaactaa ttagtagcga ggaggtgcgc catgaattgg
     2281 tggagttata taaaagataa gcgatttttc ttattgtttt tttgtagtat tatgtttttt
     2341 gtaggcgtgt tgatttcgat cgatccgaac agtaaattaa cgcttggaaa tttcatttac
     2401 ttgtatgttt ttgttttagt cttcttgctt tcctatctcg tgctgggcta tttctttaaa
     2461 tataattatt ggcgtgaaat gaaggaactt gttagcggag agattgaaga gaatatcatt
     2521 gaattactac caaaaccacg tactcgcgaa caagcctttt ttaatcaact aatggcaaaa
     2581 aaacataaag aagaattacg aactattagt aagctacaag ataaacagca agaatatcat
     2641 gattttattt tatattgggt gcatgaagtg aaaaccccgg ttgttgcaag taaaatgtta
     2701 attaacaatc ctgatttaaa tgatacagaa acgattttca aacaaatcga tgaagaatta
     2761 acaacaatag ataaattagt tatgcaggca ctttattttt cacgtctaga tactttctca
     2821 aaagactatt ttattcagga gcaaaatctt ggagtagtag tgcgcgaatc agtcaaacgg
     2881 cattctaaac ttttcattgg gaagaaaatg aagttggatt tgcaaaatgt ggacatggat
     2941 gtgcgtacgg atagcaagtg gcttggtttt attttggatc aaatcttgtc caatgcactc
     3001 aaatacacaa aaagcagtgg cgaagtaaaa atttggtgtg atacagaagc atctgagaag
     3061 aaagtgctac acataaaaga caatggacgt ggaattaagg aagaagattt gccacgtgtg
     3121 ttcgagcaag gtttcacggg taatattggt agacaagaga aaaaagctac gggtatgggt
     3181 ttatacctag ctaaacaaat ggcaaagaaa ctaggtcacg aaatttgtat tcaatctgaa
     3241 agcggcgtag gaacagaagt gaaaatctac tttgaacaga aagatgatta cttactgatt
     3301 gccaaagatt aataaaaagt ggtacaccaa ttatgattgg cgtatcactt tttttgtaaa
     3361 taaaatggtt gactctatcg ctttatcgtg gtagagtatt agcaagaaga agtaaaagcg
     3421 tcgaacagaa caagtagagc gtaattcttt aaaagagagt ccttggttgg tgtgaaagga
     3481 taaagatagc gttatcgaac acatctcgga gctggtttgc tgaagcataa gtgagtaggt
     3541 gaactcgggt taagcccgtt atagcttgtt agtctcgaac taacagaggt tggtactgcg
     3601 aagtatcagc aaattgaggt ggaaccacgt gaatattatt ctcgtcctct tggccaatta
     3661 gcgccaagtg cgacgggatt tttttatgtt aaaaaaggag cgaagaatga tggattatat
     3721 cacggagatt ttaccagcat tacttgatgg agcaaaaaca acactgctcg tttttgcagt
     3781 tacgttagtt tgttcgatac cactcggggc ggttgtggca gtcggaaata ttagcaaaat
     3841 agccccactt aaatttattt taaatattta catttggatt atgcgaggca cgccattact
     3901 tttacaatta atttttattt attatggctt accgattatc ggggttgttt ttgaccgaat
     3961 ggatgccgtt tttattgctt ttattttaaa ttatgcagct tattttgcag agattttccg
     4021 cgggggattt ctttccatcg aaaatgggca atatgagagc gccaaggttt taggtcttac
     4081 ttacggccag acactgcaga aaattgtctt accacaagtt gtcaaacgtg tcttaccagc
     4141 aattgggaat gaagttatta acttagtaaa agactcttct ttagtatata ttcttggaat
     4201 tggcgactta ctaagagcag ggaaaattgc tatgagtaga gatgttacac tgattccact
     4261 cgtattagta gctgcaatct acttagcttt aacggctatt ctaaccatat tatttaaaca
     4321 actcgaaaaa cgttttagtt attataaatg aggtgaagaa aatgttagaa attaagaatc
     4381 tatcgaaaaa atttgatcaa aaaacaattt tagataatgt gaatatttct cttcaagatg
     4441 gtgaaattct ctcaattgtt ggtccatcag gtggtgggaa aacaacttta ctgcgctgta
     4501 ttagtggact ggaaaaaatg gatacaggtg aaatttttat tgacgaggaa aaaattgatc
     4561 caatgtcgag aaaagatgtg gaaaatacga ttggtgttgt tttccaagaa ttccacttat
     4621 ttccgcattt aagtgtttta gataacttga ttttagcacc gacccttgct cggaaaacaa
     4681 agaaagcaga tgccgttaaa gaagcagaac gattacttgg cttacttgat ttagccgata
     4741 aagcaaatag tatgccgtac caattatcag gcggacaaaa acaacgggtc gcgattgcca
     4801 gagcgcttgc gatgaatccc aaagtgctgc tatttgatga accgacatcc gctttagatc
     4861 ctgacttgcg cgatcatgtt gcagcattaa ttttaagttt gaaaaaggtt ggtattacgc
     4921 aaattatcgt tacacatgat cacacttttg ccgaaaaagt agcggatcaa atgatggaag
     4981 tagaaccatt aaaaaaggag gcaatctaac atgaaaaaag gattattaat aactgtaatg
     5041 ttaatggtaa tgttagcgct gggagcttgt tccagcggtg aatctaaaga ggaccagtgg
     5101 agtagaatta aaaaagataa agaagttgta attggtttag atgatagttt tgtaccgatg
     5161 ggatttcgtg ataaagacga taacttagtt ggctttgata ttgatttggc gaaagctgta
     5221 tttgcagaat atggcattaa agcaaaattc acaccgattg actggacgat gaaagaatct
     5281 gaactgaaaa acggctcgat tgatttaatt tggaatggat atactgtgac ggatgcgagg
     5341 aaaaaacaag tcgcttttag ccagccttac atgaaaaatg aacaagtatt agtcacttta
     5401 aaatcaagca atattaatca atttagcgat atgaagaata aaacgctcgg agcacaaaat
     5461 ggggcaagtt cgatcgatga catggcgaaa aaaacagaag tgctaacaga cattataaat
     5521 aataacgaac cagaattata cgatacgttt gatacagctt ttattgattt gaataacaaa
     5581 cgaatcgatg gtttaatcat tgatgaagtg tacgcgcgtt attacattga taaacaaaaa
     5641 aataaagacg attacaacat tataacaggc ggttttgatg ccacagattt tgctgtagga
     5701 atgcgcaaaa gtgataaaga actgcaaaca aaaatcaatg aagcttttga aaaattatac
     5761 aaagaaggaa aaatgcaaga aattagtaaa aaatggttcg gtgatgacga aatcgctaag
     5821 caatagtgcg attgacagta ggtttaagtt cctatacaat ttgaattata aatgtcgcag
     5881 ccgaatatcc gaccgtgcca gacagaaggg atgatttttg ttgaataaag aattgattgt
     5941 tcgcggagct ccgcaagaat atttatgcca agtaggcgcg tgggatacat tacctactca
     6001 cctagaacgc cgcggtttga aaaatgtatt agtagttcgt ggaaatgctt cttgggaagt
     6061 cgctaaaaag aaattccctg ttttatcaac tgttacatct acttttgaag tatataatgg
     6121 tggttctacc tacgaggagc gcgatcgtct ggtggcaatc atggaaacaa ataagatgga
     6181 tgcgattatc gcagtaggtg gcggaaaaat agctgacgta tgtaaagcga cagcagcagt
     6241 tctacgttta ccagtcatta tcttaccgac acttgcatca acttgtgccg cttatacacc
     6301 acttagtgtg atgtacgacg aagagggcgc tatgattcgt tacgatgtgt ttgcgagtag
     6361 taatgcgctg ttattaattg atccggaaat gattttagac tcaccgaaag agttactagt
     6421 tgctggaatt ggcgatacgt tagccaaatg gtacgaagca gacgtgatta ttaattcctt
     6481 accaactaaa tcagtcgaaa ttgaaatcgc gcattttgct gccaaaatgt gccgtgataa
     6541 cttgttgcaa tatagcgaag aagcacttgc tgccatggac aaacaagtat tgaatgaagc
     6601 gtttgttaaa attattgaga cgaatatttt agttggtgga atggtcggtg gttttggcga
     6661 tgattatgga cgttgtgcag gagcgcattc gattcatgac gcgctaacga tggttccaga
     6721 aacacatcac ttattgcatg gtaataaagt agcttatggt attttagttc aattagtaat
     6781 agaaaataga tgggatgaaa tcgagcgttt gttgccattt tattctgagc ttggtcttcc
     6841 gatgagttta tatgatatgg gacttgcgac acttgcggaa gaaacgcttg tggccgtatc
     6901 taaacgtgca acggagccac atgaaacaat ccatatgatg cccggtgaaa tgacagctga
     6961 tgtagtatta aatgcgatga aacagttaga agatagtatg gcaatgaaac gagtggctaa
     7021 gtaaaaatga ttattcggaa agaacaacca caagattacg aggccattcg tcgtgtgaat
     7081 gaggaagctt ttaagggtac tgtggaagca gacttgattg aaagtatccg gacatccgat
     7141 tattatcaac caggtttatc ccttgtcgca gaagcggagg atggacttat tgttgggtac
     7201 attatgttta gtgagatttc gcttgaagca gccggacgaa gcagatttat tttagcactt
     7261 gcgccacttg ctgttttacc tgcgtatcaa gggacgcgag ttggctcgag attaatggaa
     7321 gaaggaatcc gtttatcacg cgaaaaagca tatccggcca ttgctgtgct tggacatgct
     7381 gattattatc cgcgatttgg ctttattcct tctgagcagt ttgctattcc tgcgccattt
     7441 gatgtgcctg ctgaatactt tatgttatta gaattatatg atggtagttt agaaaattta
     7501 gctggaacta tccattatcc agctgcattt tctgaaaata attaattcga aaagaacgaa
     7561 ataataaacg aacggaacaa attctcggaa ggggataggt tccgtttttt tgtcgtaata
     7621 atcccgaccg aacgccgcaa ttctttatca cgcaaagcga tacttttcgt ttccttaaaa
     7681 atcgctccat ctaaaatcat ttctggcaaa atgctaatac caagacctgc tccgacaagt
     7741 ccttgaattg tataaaaatc tctactttga aatgctattt gtggctcgaa tcctttttta
     7801 ttggcagctt ttgttacgat tttatataaa tcaaagtctt ctggataaag gacgaacttt
     7861 tcggaagcga gctcttttag tgaaacggtg aagttttcag caagtggatg ggttttaggg
     7921 acaattagct tcaatttttc atcaaaaaaa cgaatggctt caatttgttc gctagattct
     7981 gggacgggcg ataaaaaagt catatcaagg acgccactta agagcatctc ggtaagttct
     8041 tcattggtgc cttccataaa ctggtaggta atttgcggat atttttcccg aaaggtcgaa
     8101 ataacggatg gcaacacttt ggtagacagg gagttcggta agccgacgcg aacagttcct
     8161 tttgcgggat cggtatattc ggtcacgagt gcttcggctt tttgtagctc gtttaaggcg
     8221 attgctgctt gttttaagaa atcttgacca acgctggtga gttgcatatt tcttccaaca
     8281 cggtcaaata aatgtacgcc gagttcttct tcgagtttcg ttatctgtct actaacggca
     8341 gattgggcta cgtgtaaatt ctcactagct ttggtcatat gctcgacacg ggctacttcc
     8401 ataaaatact ttaattgtcg cagttccatt tcttacctcc aattgttctc gaaatgagat
     8461 tgttttattc tattatatat attgtttcga taaatgaaaa ggaataaaat agatactaca
     8521 agaaatgtaa ggtaagctga atcgctggtt aattatcagt taatttaaat aattaccaga
     8581 aagacttaga aggattcggt ttttgaagag gaggaactag gatgaaacaa actaatttac
     8641 caaaaaaaca cggcctatac aacccagaaa atgagcacga tgcttgtgga attggcttcg
     8701 tagcaaatat taaaaagatt tcttctcata aaattgtcga acaaggtatt catatgcttt
     8761 gtcaattaaa gcaccgcggt ggagaagttg gtggggatac gggtgatggc gctggtattt
     8821 tacttgagat ttcagactct ttcttccgac gcgagtgtag caaactaggt attaatttgc
     8881 ctgaaaaata tcattatgcg gttgggatgt ttaatttccc tcaaaataaa acagaacgcg
     8941 aatgtttaat ggccgaaacg gaaaaactga ttgcgagtga aggtcaaacg ttccttggtt
     9001 ggcgcaaatt accaactgat gtaacaaagg tgggtgccgg tgcaagaaaa acagaaccag
     9061 cgatttatca gctattcatt caaaaaaatg ccaagttaga cgaagctggg tttgaacgag
     9121 cactttattt aattagaaag caaatcgaaa aatttgctgc gacttctaag caaattacag
     9181 agactttcta cgttccaagt ttatccacaa gaacggttat ttttaaagga atgttactac
     9241 cagaacaaat taatcaatac tatttagatt tagcagatcc agcatatgta tcggcttttg
     9301 cgctagtgca ttctcgtttt tcgacgaata cttttcctag ttgggagcgg gcgcatccgt
     9361 atcgatattt aattcataac ggtgaaatta atacgcaacg tggtaatgtc aactggatga
     9421 aagctcggga aaaaagagca gaatctgatt tacttggaga agatttagcc aaattgctac
     9481 caattattga cgaaagtggt agtgattcgg ctactttgga taatgcctta gaatttttag
     9541 tgcaggcagg ccgttcgtta cctcatgcgg caatgatgct tattccagaa ccatgggata
     9601 aaaatccgca tatgacggat ccgaaacgtg ctttttacga atatcatagt acattaatgg
     9661 agccgtggga tgggccgaca tccatttcct ttacgaatgg tcgagttatt gggacgattt
     9721 tggatagaaa tggcttacgt ccggcgcgtt attatgaaac gaaagaccat acgattattt
     9781 attcttcgga aacgggcgtt gtgccagtgg attcgagtga aattattcgc aaagaaacgg
     9841 ttggcgcggg aacgatgttg ttaattgatt tagaagaagg acgaattgtg acggatgctg
     9901 aattaaaaga agaactaaca acggaaaaac cgtaccgtga atggttggaa gcagaaatga
     9961 cagaaattgc cgatttagca acagccgatt tacattatga agcaatggat aaatcagaac
    10021 gttttaaaaa acaacgcgca tttggttaca ctcaagatga gttaaataaa attttgattc
    10081 cgatggtaac agagaaaaaa gatccaatgg gcgcaatggg ttatgacgca ccacttgctg
    10141 ttttaagcca acgaccacaa gtgttattta attactttaa acaacttttt gcgcaagtaa
    10201 ccaaccctcc gattgatggg attcgcgaag aaacggtaac ttctgcgatg acgttacttg
    10261 gtgatgaagg taatattcta aatccaactg ctcaaaatgc taaccggatt cgcttgaaaa
    10321 caccaatttt atctcgaaaa gaatttgcgg cacttgagca acaaacaaaa tttgcccaac
    10381 cgactgtcac tttaccaatt ttatttaagg cagaggaaag agatggttta gaagctcgct
    10441 tagaatcatt atttgtagaa gcagatgaaa aaatcgcagc tggggcagaa ttgctcattt
    10501 tatcagatga tggggtaaat gcggattgga ttggcattcc ttctctctta gctgtcagtg
    10561 gattacatca tcatttagtt aaagctggga cgcgtacaca agtgagtatt gttgtgaaaa
    10621 cagcggaagc gagagatgtc catcaatgtg cgctcttaat tggttacggg gcagacgcgg
    10681 tatttccaag tcttgctatc gatacgtttg acggcttgat taaagaagga cggatgaaag
    10741 gatttacact tgatgaggcg gaaagtcgtt atattgaagc aattacagat ggaattctaa
    10801 aaatcatgtc caaaatgggg atatctacag tgcaaagtta ccgtggtgcc cagatttttg
    10861 aagcaatcgg tattggtgat gatgtaatta aacattattt cccgggaaca gcctcgcaaa
    10921 ttggcgggat tccactggaa gttatcgcgc aagaagcttg gctccgtcat cgcgaagcct
    10981 atcatgatgt cggctaccag agtttcacgc ttaatacagg cggggaatat cagtggcgct
    11041 caaacggaga atatcatgtc tacaatccac tagcgattca ttctttgcaa caagctactc
    11101 gagaaaatga ccgtgaaacg tataatcttt attcagattt aatgcaaaat caaaataatg
    11161 cctttttaag aggattactc acttttacaa gtgatcgcaa gccgattcca ctggacgaag
    11221 tagagccggc cgaagccatt tttaaacgat ttaagtctgg cgcgatgtct tatggttcga
    11281 ttagtcaaga agctcatgaa gcgcttgcta tcgcaatgaa ccgtatcggc gggaaaagta
    11341 atagtgggga aggcggcgaa aacccgaacc gatttacccc ggacgaaaat ggcgattggc
    11401 gtagaagtgc tatcaaacaa attgcatctg gtcgttttgg tgtaacaagc cattacttgg
    11461 tcaatgcaga ggaactgcaa atcaagatgg ctcaaggagc gaaacctggt gaaggtggac
    11521 acttgcctgg aaataaagtc tatccatgga tttcgaaaac gcgtggttca acaactggtg
    11581 taggattgat ttcaccaccg ccacatcatg atatttactc gattgaagat ttgtctcaat
    11641 tgattttcga tttaaaaaat gcaaatcaaa atgcacgtat caatgtgaaa ctagtttcga
    11701 aaactggtat tggtacgatt gctgctggcg tagcgaaggg gaatgccgac gttattttag
    11761 taagcggtta tgaaggcgga actggtgcgg cggcaagaac aagtatccgt cacgcgggag
    11821 tgccgtggga aatcggctta gctgaaacac accaaacgct cttgctaaat ggacttagaa
    11881 acaaagtcgt tgtcgaaaca gatggcaaac taatgacagg aaaagacgtt ctggttgccg
    11941 ctatgctcgg cgcggaagaa tttggttttg caacggcacc actcgtaaca cttggttgcg
    12001 tcatgatgcg tgtttgtcac ttggatacat gtccagtagg tgtagcaaca caaaatcctg
    12061 agctgcggaa aaaattcagt ggttcggcag attatgtcgt gaacttcttc cattttatcg
    12121 ttgctgaaat gcgcgaaatg atggcggaac ttggctttag aagtttaaca gaaatcattg
    12181 gacataaaga atttttaact actcacgaga aaaaagaagc acattggaaa gcaaaatata
    12241 tcgacttttc gaatatgctt tatagtgatg atttttataa aaaccaagtc caatattgca
    12301 caaaacaaca agaccacaaa atcgaccaaa cgcttgatat gcgcgaactt gtgccattaa
    12361 ttcagccggc actagaaaac ggtgaaaaag taactggaac tttcgctgta cgaaatgttg
    12421 accgcgcgat tggaacggtt gctggctcct ttattagcaa aaaatatggt gcagagggat
    12481 tgccggaaga taccatttca cttgattttg ttggttcagc tggacaaagc ttcggtgctt
    12541 atacgcctct tggcatgacg ctccgaattc acggtgacgc caatgattac ttcggaaaag
    12601 gactttctgg tggcaaattg attgttagtc cagatgctaa aacacctatt aaaccgcatg
    12661 attccgcgat tgtcgggaat gtaacgcttt acggtgcaac tggtggttat gcctatgtgc
    12721 acggaaaagc aggtgcacgt ttcgctgttc ggaatagtgg tgcgacagct gttgtggaag
    12781 gcatcggtga caatggttgt gaatatatga caggcggtgc agtagttgtt ctcggtgaaa
    12841 ttggtgagaa ctttgcggct ggaatgtctg gtggagttgc ttatctttat acaaacaata
    12901 aacaagcgac gacagccaaa atcaatcatg aactcgtaaa cagccgttct actttaaata
    12961 cttccgaatt aactaaatta aaacagctga ttgaacaaca cgcaaacctt acaggaagca
    13021 attttgctaa agatattctg caaaattggg aagcagagaa agcgaatttt attttcgtca
    13081 ttccaaatga atatgaaatg atgctgacga gaatcacgac gcttgaacaa actggaaaaa
    13141 cacatgatga agctgaatta caagcttttt atgaacataa agacggaaaa ttagttgccg
    13201 gagtggcgaa atagagagga gtgaaaccat gggaaaagca actggattta tggaatatga
    13261 ccgaattccc tctccaggac gtgatccgaa aagccggaca cgtgactgga acgaatatag
    13321 tttaccaatg ccggtagcag atttaacatt acaagccgct cgttgcatgg attgtggcgt
    13381 accgttttgt agtgtaggaa tggaaattaa aaatggtgtt tcaggctgtc cgctgcataa
    13441 tttaattccc gagtggaacg atgccgttta tcggggtgac tggtatgaag ccttacaact
    13501 actcttaaaa acaaataatt ttccagagtt tactggtcgt atttgtccgg caccgtgtga
    13561 aggtggctgt acggtggcaa tttcggaacc tgctgtaggg attaaatcca tcgaaaaagc
    13621 gattattgac cgaggttttg aagaaggctg gattaaaccg gctcctccta aaaaacgtac
    13681 cggtaaacga attgctgtga ttgggtcagg accggctgga cttgcctgcg ccgatcaatt
    13741 aaataaagct ggccatagcg taacggtcat tgaaaaaagt gatcgcattg gtggcttatt
    13801 aatgtacggt attccaacga tgaaactgga gaaagaacaa gtaacgcgcc gagtgaactt
    13861 gatggcggaa gaaggaatcg aattcgtcac aggtgttgca gcagggacag atgttacttt
    13921 tgcagaacta cgagaagagt atgattctat cgttcttgcg acaggagcag ggaatgcgcg
    13981 cgatatccca cttgctggac gtgatgcagt tgggattcac ttcgctgttc cgtatttatc
    14041 gcaaagtacg cgtgataatc tggataacgg cggggtacaa acactttctg ctaaaggtaa
    14101 aaatgtggtg attatcggtg gtggagatac aggtgctgac tgtgtggcaa ctgcgctcag
    14161 acaaggggca aaaagtattt atcaattcgg tattcaagat aaactacccg aattgcgtga
    14221 tggcgaaaac ccttggccgc aatatccacg tgttttcaaa atggattatg cgcacgaaga
    14281 agcggaagca gtgtatggaa gagatccacg tgagtacctt attaatacaa cttcttttga
    14341 aaaagatgaa gcaggaaatc ttattggact gcatactgta gaagtagaag aaaataaggc
    14401 agaaagaaaa tatacacctg tagaaggtag cgaaaaatac tttgaagtag atatggttct
    14461 aattgcgatt ggttttgcag gaacaaccga agatattttt acaaactttg gtgtaggaaa
    14521 aacagagcgc catacgatag atgctgctaa aggattttac cgcacaagcg aagagggcgt
    14581 attcgcttgc ggagatgcgc gtcacggtca aagtttagtt gtaaccgcga ttgcagaagg
    14641 acgagaagca gctcgtgaag tagactttta cttgatgggt gaaacatttt taccataata
    14701 aaaaagagct tatcctaaat gggtaagctc ttttttgact aattatttca ttccagaaac
    14761 gttgaagcct tttaaaatgt acttttggaa tgtcatgaaa atcaagataa ttggaataac
    14821 catgaaggtt gctccggcca tttgtaaggc gtagttgctg ccatattgac cttttaataa
    14881 ttgaaggcca actgataggg tgtagaattt ttcgtcgttg gcaatgatta acggccataa
    14941 gaacgagttc caaccagcga tgaaagtaag aataccttgt accgcaagca cagggcggga
    15001 aatagggata actatccgcc agaaaatata aaattcacta gcgccatcaa gtcttgctgc
    15061 ttcgagtaaa tcatcggata tggtggacat aaattgacgg aataagaaaa ttccgaatgc
    15121 cccaacaagt cctggaagca caatccctgt catcgtattc gttaatccag ccgcattaag
    15181 cagcaagtaa accggaatca ttgttacttg tcctggaatc atcattgtag caagaacaag
    15241 ataaaataac ttgtttttcc ctttaaattt aaatttagca aagccgtaac ccgccatcgc
    15301 atttaaaaat aaaccgaaaa acgagaagaa cacaatgatt aacgtatttt ttaagtaaat
    15361 agcaaagtcc atttcagtaa atagtttggt gaaattatct agtgtgaaag tttctggcca
    15421 aatagtaggt gggattttta aaatttcagc atccgttttc aaagaggaga gaaccatcca
    15481 aatgaacggt aaaatcataa agaatccgcc aaccgttaaa attgtaatta cggcaatttg
    15541 agcgccgcgc gatttttgtc tatattgatt catttataaa cactcctctc ttaaatatcc
    15601 ccatcattat ttttgcgctg aatccggaat tgaataatcg tgataataat aatcgcgata
    15661 aacaagatga acgatccagc agcggcataa ccaaatttac ttaattggaa accgttttga
    15721 tagataaaga gggcgacaga gttcgtacta tcaagtggtc caccttctgt cataacgaac
    15781 ggctcctcga agaattgcaa ccaaccaatc atcgttgtaa ctgttacaaa gaaaatggcg
    15841 aaacgaagca ttggaaccgt aattttaaat aattgttggc ggctatttgc gccgtcaagg
    15901 gaggctgctt cataatattc acgtggaatg ccttgtagtg cggctaagaa aataatcata
    15961 tttacaccga ttgcccgcca aacagctagg ataatcagtg ataatttcgc aatagtaggg
    16021 tcttgtaacc atggaactgg tcctaagtct aaaaacgaga gcaaatagtt aagtaaacca
    16081 aagcgcggat tatataagta actccaaacg acagctacag caacaacgtt tgtaattgaa
    16141 ggagtgtaga agattaagcg gaaaaattgg aaaatcttcg cttgtgagaa gttaatcatc
    16201 agcgcaatac caagcgagca gacgataaca agtggaacgc caataattac atagaaaagc
    16261 gtgttaaaaa tagattttaa aaataccggg tcttgcataa tattgacgta attgtccaca
    16321 ccaacaaagt taattttaga gtaatcggca agcccgacta aatcaatgtc cgtaaaacta
    16381 atgacaaaag caagcaaaat cggaagtagg gaaaacagaa gaagtaaaaa cagtgctggc
    16441 gatataaaca aatagggtgt atttttattt aaaaattgtt tcataacatc cagtccattc
    16501 taaaagggca aatggcagaa taaatcattt gcccttttta ttcgttattt tttaagaagt
    16561 gcttctactt gatcgttgaa agtatccatt tgtgtttgta catctgcacc accacgataa
    16621 atttgttccc aagattttcc atataattga gcgatttcct caaattgtgg gataagtggc
    16681 attggttcag ctgttttcat ttgttcgccg aatactttgt agtaagggtc atttttcagc
    16741 atatcatctt cccaagcatc catacgagct ggcatggagt ttgtatcttt taaccaagat
    16801 aattgcacat caggttgact catgtagtcc atgaatttta gagcatcatc tttcttatca
    16861 ctatatttga aaatggaaag gttagcgcca ccaaggcttg attcgttatt ttctttttta
    16921 ggtaatactg cagtagccca ttttccgtca atgtcagggg cagtgtcttt cagtgtatta
    16981 accatccaag gaccactcat gaacattggc acaataccgt cgccgccgaa gctttgagaa
    17041 gcatctaaac caagatcagt atctggagcg gaaccatttt taatgaaact atctaaataa
    17101 ctaacagtgt ctacgaaagg ttttttattg aatactggtt gaccatcttt atcgaaaaga
    17161 ggggagccgt tttgacgtcc gaaaatgaaa ccagtcgttt gttcgtttgg atcaatggca
    17221 aagccgtaca tatctttgcc acgtttagaa agtttaagtg cagcgtcgga tagttcatcc
    17281 catgtttttg gagcttcatt ataaccaact tttttcagta aatcggtacg gtagaataat
    17341 acgcgagttt ctgcatacca cggaacaccg taagttttcc cgtcaaattg agtagttttt
    17401 actgaacctg ggaaaaatag atcagaattc atatttttac ttttttcgac atcttttgta
    17461 atatcaagta gtgcgccagc ttcgacaaat tcaggcatcc aagtagttcc catttggact
    17521 acatcggggc cagatttaga agcaacggct gtaagtaatt tatcatgtgc atttgcccaa
    17581 ggaataactt gaactttaac ttcaatgcca gtatctttcg tgaatttttg tgcgagttct
    17641 tttagtgact tggcttcatc acccattgcc caaacattta atactttaga atcgccggaa
    17701 tttgcatcat cctttgaccc accacacgcc attaacacta aactaagcga caacactaaa
    17761 gctaaaacga caaacatctt tttcttcatg atttttcctc cattttttgt ttttttcaaa
    17821 gcaacttgat taactaaaag ctgttaaaga ataaaaactg ttgcacggaa ctagtgcgcc
    17881 gtacgggatg aagcaaattg tgaaaattaa ttcacataca caatatttca tagaaacgtt
    17941 tcgacaaggt tattatagta tattatgtaa tcggtttcaa gtgaattgct attttatttt
    18001 tactttatag cgtctgaaca ttgtatatca atggttttgt ggatataaat tttttctgga
    18061 taaactttta cgaaaacgag atagtataga agaaaaagaa aaaaaggagc gtttcaccat
    18121 gtgaatgtcg tttttggttg actaaagaaa agaaagcgct tatactgttg ttatatttga
    18181 atagaaacgt ttcgaaaaaa gtgttcagga ggttcctatg aaacaagaaa aagtacagga
    18241 tttagtcaat caaatgacat tagatgaaaa aatcgctcaa tgtcttcaac tttccccttt
    18301 tctttttaaa ggtacaaaca aaaatgcaga actaacaggg ccgcttcttc aagaaatgaa
    18361 attgacggat gcgcatacgg aaaatgcggg ttcggtgctt ggatcaagct cggcgcttga
    18421 tatgattggt attcaggaag cttatttaaa aacgaatcga ttaggaattc cgcttgtttt
    18481 tatggcggat gtcatacacg ggtataaaac ggtatttcct attccgcttg cacttggttg
    18541 ttcttttgac cgggagactg ttcgagtgat ggcagaagtt tcggcgctcg aagcaacggc
    18601 agatgggcat catgtcactt tttcaccaat gcttgattta gtacgggacc ctcggtgggg
    18661 acgtgtgatg gaatcaactg gtgaggatcc atttttaaat agtgaacttg gaaaggcaat
    18721 ggtagatggt taccaaggcg atgcgagtaa actacatgaa aacttggagc aaatggcggc
    18781 atgtgtcaaa cattttgcgg catacggggc tgcggaggct gggctggaat acaacacagt
    18841 taatatgtct acgcgcgaac tttatcaaaa ttatttacca gcttataatg ccgcaataca
    18901 agctggagct aaattagtca tgactgcttt taacgtggta gacgggattc cagcaacaat
    18961 gaacaaatgg cttaaccgag atgttctacg agacgaaatg ggttttgacg gtgtacttat
    19021 ttctgactgg ggcgctgttg ccgaagtaat taatcacgga acagccagaa atcctaaaga
    19081 agccgcacag ttttcgatgg aagcaggcgt tgatttagaa atgatgacga cttgttatat
    19141 ccatgaatta aaaggtttaa ttgaagaagg ccaattatcc gaaagccttt tagatgaagc
    19201 agtacttcgg atgttaactt taaaaaatga tttagggcta tttgaagatc cctatcgcgg
    19261 attaaaaaat aacgaccgca caaaagatat tttaaccgat gatagccgcg ggaaagctcg
    19321 ggcagcaggt attgaatctg ctgtgttatt agaaaataaa aaccgattac ttccactggc
    19381 taaagaagca aaaattgcct tggttggtcc acttgcaacg tcgcctgata ttctcggtgg
    19441 ttggaatgta tacggtgaag aaaaagatgg catcaatgtt gaaacaggtt tgcgtgaagt
    19501 atttgaaacg gtcgaagtcg tttcaacgga gtacactgaa ttgtcggaag aagacaaagt
    19561 ggcagtgaaa gcggcagtag agaacatgga tgttgtcgtg cttgccctag gtgaaaaaaa
    19621 tgaatggggc ggggaagcag gaagtcttgc tactatacgc ttgccggaag cacaatatga
    19681 attagcgaaa ttcgtccaaa cattaggaaa accagttgtt attacattat ttaatggtag
    19741 accgctcgaa gtgaaagagt tagcagaatc tagtgatgct cttcttgaat tatggttccc
    19801 agggacagaa gcaggccgtg tcactgcaga tttattaagt ggtgcaagta atccttcggg
    19861 gaaattatcc atgtcattcc cgcaaacaac tggtcaaatt ccggtttatt ataatcattt
    19921 acgcactgga cgaccacaaa caccggaaaa taaaggcgaa cgctatgtgt cgcattatct
    19981 tgatattcca aatgaaccat tttatccatt tggttacgga aaaagctata gcgaattcga
    20041 gttaaaaaca agcagtcttc cgaaagaact aaatctaggt gaatcactac atgtggaagt
    20101 aaccattaaa aacattagtg atattgctgg aaaagaagta atccaagttt atttacaaga
    20161 tgtgacagcg agcatttcac gaccagtcaa agaattaaaa gcttttgaaa aagtagcgct
    20221 tcaagctggc gaagaaaaaa cagttagatt tgaattaaca agcgaggcat tttcattcta
    20281 taaccagcag cttgaaaaag tgcaggaacc gggacttcac cgagtttttg ttgggactag
    20341 tagtgaagat gtagacgttt ttgaagtgga agtgggtgga tatgtgtgac aatgttaaaa
    20401 gaaattaaaa aagcggattt atcagccgca ttttatccga gcggagagct tgcttggtta
    20461 aaatggaaag atattatgtt aaatcaagtg attcaaaatc cattagaaaa ccgcttgtcg
    20521 caaatatatg tacgcgcgca tttaggagat aaaatagaaa tttatccact acttagcaga
    20581 gatgcggaag ttggttttaa cgaaaatggc gtggagtatc gcggtgtagt tggaccgttt
    20641 cgttatagtg tgcaaatgca ttttcatacg cgcggttggt tttatgatgt ctcagtggat
    20701 ggggatcttg agtttgattt tgtttactta caagacttgg ggcttgcaga acaagcagca
    20761 gtgagaacaa atgaagctta tatgtcgcaa tatattgatt atcatgtgac agaaggcgcg
    20821 actggtttca cggttcaagc ccgccaaaat caaccacaaa gtgagcgttt cccagcagtt
    20881 caaattggag cattaacgaa aattgttggg tatgcaacag atggttttga tatttatgga
    20941 acaaattata aactgactag cgaactagcg aaccttaagg aaaaatcatt gccaaaccga
    21001 gtctaccaat atgaattcgc tcaaatatcc ttacaaacag agctatttac taatcacggt
    21061 gaaacaagct tttacgggta tgcaacagaa aatcaaccaa aagcatctgg agcaccaatc
    21121 gaaaatttag cggaactaaa aagtaatatt tcagggcaat cttaccaaac aagtactaaa
    21181 gctacactaa acaaacacat aggaacaccg attatcggtg aaacaatttc tgacaactgg
    21241 cttcaagaga acttcccaga ccgaattcaa gaagagcaac aaaacggcga tctactttcc
    21301 tttttcacac caaattatgc ccatgttgtg atgcgtgaaa aagaagcaga attagaacgc
    21361 ccgcatggca gtattttgct tgataaagtg gatgttttaa atccagaagc gacactttcg
    21421 gcaacaacgt acatgtatgg ggcattttta tcacaattag ttgctggaaa tacgaatatg
    21481 aacaaatgga atagccatgc gcgtaatccg cttaatattc ttcaaacaag tggattaaga
    21541 atttatatcg aattagattc cgaacttcga ctactcggtg tgccgtctgt ctgggaaact
    21601 agtacaaatt actcgacttg gtattatcag tggaatgacg acctaattac ggtaaaaacc
    21661 acattaacag ctgaaagtaa agaggcattc gtcactgttc attcggaaaa aggtcgctca
    21721 tataaattag tcttaacaaa tcaagtaact atggggacaa atgaatacga tactaccgtg
    21781 aaaaaagaag ttaaagaagg aatcgtcact tatttccctg cagaagactc gccgatttta
    21841 gaaacctatc cggcgcttca attccgcgta gatggaactt ataacgaact gactgacgaa
    21901 cgttattttg caaaagaata tgtgggaaca gcaggtttgg atgtgtttgt ttttgaacca
    21961 agtgataaag cgactttcca cgttcaagca aaactcactg atgaattttc tgaaccaaca
    22021 gaggatttag aagcaaataa caaagtaatt cgcgctagct atgacgaatt aactgcgcag
    22081 ttccatttaa atcatcaaag tacaacagcg gagaaactga acttaacggt ttattggtac
    22141 gcgcaccaaa tgttagttca ctatgcttca ccacatgggt tagaacagta cagcggggcg
    22201 gcctggggta cgcgtgatgt gagccaaggt ccatttgaat ttttccttgc aacaggcaat
    22261 aaagctgttt tacgtaagct agtgttgacg attttttctc atcaatatca agatactggt
    22321 gattggccac aatggtttat gtttgataaa tatacatcga ttcagcaaga agaaagccat
    22381 ggcgatgtta ttgtttggcc tctgaaaatt attggtgatt acatggaaat gagcggggat
    22441 acagggattt tagaagaagc tattcctttt gttgatcgcg aatcgaaaac ctttacgaaa
    22501 gagcaaggaa ctcttcttga acacatcgaa cttgcagtag aaacgattga agcccgcttt
    22561 atgaaaggaa cggctctttc taattacggc gatggtgact gggatgacac acttcaacca
    22621 gctaatgccc agctgaagaa aaacatggtg tccagctgga cggtcgcgct aacatatcaa
    22681 acatttaaac gtttagctgc atttttgcca gtaggtgaga aatacgaaac attagcaaac
    22741 aatgttcaag cggactttgc gaaatatatg acaaatgata ctgatgttat tccaggtttc
    22801 ctatatttag aagaaggaaa agcacctgta tggatgattc acccagaaga caaagatacg
    22861 aatattaaat atcgcttaat accactgacg agaagtgtaa tttctgaatt agtcgataaa
    22921 aagcaagcca gtcgcaattt tgaaattatt ggtgagcatc tacttcatcc tgatggcgta
    22981 agattaatga gtgagccagc gcattatgct ggtggtgtaa gtactcattt taaacgggca
    23041 gagcaagcag ccaattttgg tcgagaagtc ggtttgcaat atgtgcacgc gcatattcgt
    23101 tatattgaag ctttagcaaa aattggcgat aaatccgctt ggcatatgct ggatgttatt
    23161 aatccaatca acataaaaga agttgtccca aatgcggcac ttcgtcaaag taatacttat
    23221 ttcagtagtt ctgatgcagc gtttttagat cgctatcagg cgcaaaatga gtttagtcgt
    23281 gtaaaagaag gtagtattcc tgtgaaaggc ggctggcgga tttattctag tggcccagga
    23341 atctatttac atcaattaat aagttctgtt cttggtattc gccaaacgga agatgcgctt
    23401 atttttgatc caattttacc tgaagaatta gatggattag aatgtcatat tgaactagat
    23461 aattatccgc ttgatcttac tttcgaaagt gcggatgagg gttctattgt cgtgaatggt
    23521 gaaaaacaac cagttgaaaa tgaagcgaat ttgtaccgaa ctggcgcact cgttttaccg
    23581 aaaaagaatt taacgacaaa atgttcacaa atcacgatta aattttcaaa aaataaccgt
    23641 ctctaaggtt gttttgtgta taataaaaga aaacagaaaa ggatgcgatt cacgtggtag
    23701 gaattaaaga tatcgcgaaa aaggcagggg tttccatttc aacagtatcc tacgcgctta
    23761 atggcagccc gaaagtgacc gaaaaaacgc gaaaacgaat tatgaccatc gcaaatgaat
    23821 tgaattatat tcccaatatg gcagcacgaa cgttaaaaac aagagaaaca aaaattatcg
    23881 gcgtctattt aacgaattac ggcgggattt tttacgggac tttactggaa ggtttaacgc
    23941 aaacgctata taaacatgga tatgaactca tcgcttgcag tggcacgaaa acacaccgat
    24001 ttttacccga gaaaatgatt gatggcgcta ttattttaga tgcgaatttc ccgtctagcg
    24061 aaatcattaa ttatgctaat cgtggtcata aattagtggt gcttgaccgc gaacttaccc
    24121 atgagaacgt gagccaagtc cttctagata ataaaggcgg cgcaacgcta gcaattgatt
    24181 atttatctac taattttaaa ggtgatttct atgtcattac cggtccagaa gattcttatg
    24241 atgcaagagt caggctcgaa accgcgaaac aagaactcgc tcggtcaggt gacaaaaagg
    24301 tgcatattat tgaaggagac ttttccgaag aaagtggcga aaaagcagca gccattatca
    24361 cggaaaactg gaaggcgcct gtttctgtat ttgccctaaa tgataacatg gctattggga
    24421 tgtatcgtta ttttgcaggg acagatttgg aaatcggcaa agacgtacga attattggct
    24481 ttgataatac ggatataagt gagtatttgg ttccacgtct tgctactatc gaatactcga
    24541 agtacaaatg gggcgcagtt gccgcagata aactagtgga actccttgaa ggtggaaaag
    24601 ctgaaaacga aataatctat actactagaa tcagtgggcc atctgtttca aacaattagt
    24661 acgctttttt ccttatttta aggtatactt aagataaaat gaagggagct gttggctaat
    24721 gaaacttgga attatgggaa cgaactggat tacggattct tttattgaag gtgctattaa
    24781 ttcaggtgaa tggaatctta ctgcggtata ttcgcgcaca gaagaaaaag cacgcgcatt
    24841 tggagaaaaa tatggggact tgacttattt cacggatata gaagaaatgg gcaaatcaga
    24901 tgcacttgat gcggtctaca ttgcttctcc taatgcgctc cattatcaac atgcggttag
    24961 cttactgaaa aataaaaaac atgttatcgt agaaaaaccg attttttcta ccgtagccga
    25021 attagagcat gcgcatcaaa ttgctcgcga aaacaatgtc tttttatttg aagcagcgcg
    25081 ccacattcaa gagccaaact tcaaacgcct acaagaaaac atcgaaaaag taggtactat
    25141 tcacggggca acactagcgt acatgaagta ttcttccaga tacgatcaag ttttaaacgg
    25201 tgaagaacca aacatcttct ccttgaaatt ttctggcgga tccatcgttg acttaggtgt
    25261 ctatccatta tattcagcga ttacactatt cggtgaaccc ataaaagcaa cttattttgc
    25321 cactaaatta ccaactggtg tagacggact tggaccaata attctcgaat acccaacatt
    25381 caatattact atcattcaag ggaaaaactc acagtccttc ctgccaagcg aaatttatgg
    25441 tcaaaaagga acactaattg tcgatccact tactggaatt gaaaagatta ctttttacga
    25501 caacgcaaca aaagaagaaa cagaacttgc tggtccagtt gtagccaatg atatgcaatt
    25561 tgaagcagca gagtttgcta gaattatcga acaaagcgac cgagatacat atgaatactt
    25621 agcagaccta agcttgaaag tattacgtgt ctccaacgaa cttcgtcacc aaaatgacat
    25681 ttggtttgac gcagaaaaat aattttgaag agctaggaaa aggctttcgg gctgttttct
    25741 agctcttttt ctgcgcaatg taaattctaa ataaaagtgc agacttgcag taagcatggt
    25801 atgatacaga gaagaactaa taaaggagtc gggtcatgac agaatcaaat atcccaagct
    25861 tttgggcgga aaaatggcaa gaacatggtt atgaaacgcc aacagaaatt caaagcgcaa
    25921 tgtaccaacc aatcaaagac ggtgcagatg tacttgcagt atcaccaact ggaacgggga
    25981 aaacggtggc ttatgcactg ccaacccttg aaaaaataga ggcaattcca aaaacacaat
    26041 ggcttgtttt agcgccatca catgaattag ttatgcaaat cacggaagta attcgttcgt
    26101 ggttgccaag tgatgaactc acagtaatct ctttaatcgg aggagccaat gtcaaacgcc
    26161 aaatcgaaaa attaaagaaa aaaccacaaa ttatcgtagc ctctccaggg cgtgcacttg
    26221 aactaatcaa acaaaagaaa attaaaatgc atgaaattaa aacgattacg ttggacgaat
    26281 gcgaccaatt acttcgccaa gaaaatttta aaagcacact tgagattgtt gaaagtgctg
    26341 ttcgcgatcg ccaattgaca cttgtatctg cgacaaaatt agaaaatccg gacatgtttt
    26401 ttgcacaaac agaaaacaca ccagtaatgc tagaggtaac agcaaaacca gaagaattaa
    26461 cgaatgtgga acacctatac atggatgtgg aatcacgtga taaagctact ttactgcgcc
    26521 gtatttcgca tattaaagac atgcgcggct tagttttcgt aaaagacaaa ccacgaatgg
    26581 aaattttact agaaaaactt cattacgata aagtaaaagc agctggaatt cacggcgaaa
    26641 ttcgcaaaga aaaacgcaaa aaatatctgg acgactttaa aaaaggcacg ttgacttatt
    26701 taatcgtgac agatgtagcg gctcgtgggc tagacataga agatttacct tacgtgattc
    26761 actatgactt agcagcaagt gaaaaagagt acacgcaccg ttctggacgg actggacgaa
    26821 tgggtaaatc aggtacggtt attactttcg ctaacccacg tgaaataaga acattaaaac
    26881 aatatttaac tatccacaac ttaaaaggga agcaggttcg cttttatcaa gggaagcttc
    26941 ttgacggcgc tgttccagaa aacaaaattg ccaaaaaagc atctagacta ccaaaacaag
    27001 ttcaaaaagg taaaaaagat gacgtgaaga aaccattccg taaagacaaa ccaacggaaa
    27061 ctgctggaaa acgtaaagat aaaccaacta acgcgtctaa accgacacgt aataataaac
    27121 caaataaatt taacaaaaaa ccaactaatt tcaaaagatc ttaagatgcg ttgaatgttt
    27181 ttctctcttg atagatagga aagcattcgc gcttttttta gttaattttt atcgttgcga
    27241 ggatgctgtt taaaaaggta taatggaaac atagagtttc aaaaaggagt agagtagatg
    27301 tctagtagaa aagaagaagt cctccaactt ctaaacgaaa aagaagaaaa agtatctgct
    27361 gcagatgtcg cagaattgct tcaaatggac agagcaaacg ctagtcgtta tctaaatgat
    27421 ctttttaaag agaaaagaat agacaaactt cctgggaaac cggtatttta tcaagccatt
    27481 aaaaaagcgg aaagagctag ccaacatgcg ggaaatatac aagagtctgc ttttggaaga
    27541 ttgataggtt cagaagatag tttaaaagta agtattcaac aagccaaagc cgccattcta
    27601 tacccgccaa acgggctgca cagcttaatt ctaggacgga cgggtacagg gaaatcactc
    27661 tttgctgaat gtatgtatca atttgcgaaa gaatcggaaa ctatcccggc cgatgcgccg
    27721 tttgtttcgt ttaactgtgc cgactatgca caaaatccac aacttttatt tggtcacatt
    27781 tttggggtaa ttaaaggagc atatacaggg gcagaagaaa cgcgcgaagg tttgctaaaa
    27841 aaagcagatg gcgggatttt attccttgat gaaatccacc gcttgcctcc agaaggtcaa
    27901 gaaatgctct ttacttttat tgataaaggg gaatttcgtc cactaggtga aagcgcgaat
    27961 gtccaccatg cacaagtcca aattattgga gcgacaacag aatcaccaga taatttttta
    28021 ttagaaacat tcacaagacg tattccgatg acaattacct taccatccct tgcagaaaga
    28081 aatctggaag agcgttatca attagtggag tttttcttga accaagaagc tacaagactt
    28141 caccaatcca tacgtgtaca cagaaaagcg ctgattgctt ttttacttta tcatgcaagt
    28201 gcgaacgtcg gtcaattgca aagagactta aaactagcct gtgccaaagc atttttacat
    28261 tataaaacca aaacggctaa ttatatatta atcgaacaag atgacttgcc tatccacgtt
    28321 caaaaaggtt tactccactt aaaagacgaa ccagaaaaat taaatcgttt gattgacgtg
    28381 aacaaagcca tttttaaatt tgttgatacg agtgatgaat ttgttgaaac agaagatgtt
    28441 catgatgttt accatgccat ccaagaaaaa gcagatcaat taatgaaaga agggaaggac
    28501 caaagcgagt tagaagaagc actttatgtt gatgtagatc aatatttcca caactacatg
    28561 gtccagttac caacccacca aactgccaaa gaaattattg cgcctgctgt ttgggaatta
    28621 acagaaaaag tatatgccat ggcagaagaa aaactaaatc gcaaatacaa cgaaaaaatg
    28681 aaatttgctt tttctttaca tttacaaagt accatcgaac gagtacggga acaaaagcat
    28741 atcattcatc ctgatttaaa taatattcgc aaaaaatatc caaaagagtt ccaagtagct
    28801 attgatttat ccgcactgat tgaacaagaa ttaagcattg aaattccttt tgacgaaatt
    28861 gggtttttaa cgatgttcct gacagaggaa gtagtagata cgtcactttc tcaagaaaat
    28921 caagtcgaag ttattgtgat gatgcatggc cgttcaactg ctacgagtat ggtggagacg
    28981 gtacaggaat tactgagcat tgaaagcggg attgctcttg atatgccgct cactgttgaa
    29041 gtaaaagcga tgtatgaaaa attaaaacaa atggtcatta agttaaatcc tgtcaaaggc
    29101 gttctaatcc tttctgatat gggttccctc acttctttcg gcaacatgct gaccgaagaa
    29161 ctgggaatcc gtacaaaaac cgttacgatg gtaagtacac cagttgtact ggaagcgatg
    29221 cggaaagctt cacttggtcg tggtttagaa gatatttatc aaagctgtga gcaattattt
    29281 gaaaataaat ataaagcgca tgtcttacgc gctaaacctg tgaaaaatgc ggttatcttc
    29341 acttgtttta ctggagaagg agtagccgaa cagttgcgta aagtcgtagc accaattatt
    29401 gatgaaacaa aaattgaaat tattgtatta caattcttgc ataaagaagc ttttcgggag
    29461 cgaattgatc aactcatgga agaatataat attctagcca tcatgggatc agtagccttt
    29521 gaatatcgcg atatcccatt ctttagcgca ctggaagttc tatcagaagg tgggttaggg
    29581 attgtttcta gaatattaaa tgatgaagta ccttacgaaa aattaatcgc ttcattagaa
    29641 ggaaatttac aagcagtaag ctctgctgaa caactggttt actttttacg aaaagtaatt
    29701 tcagaattgc aattgcaact taatgttata cttgagtcag gtgtggacat tggtatgatt
    29761 ctacacttag ctttcctcat cgaacgcgtg aaattaggcg ctgtcgaccg ggaattccca
    29821 gacttaaatg aatttgccaa aaatcatatg gtggaaatgc aaattacaca acaaatgatg
    29881 gaaaacgtag aaattgagta tgatatcgta ataccgcaat cagaaatcgc atatttaaca
    29941 cagatgatgc tctcaaacca ggtggaagaa aattaagaaa aaggaatctg ccaagtgtgt
    30001 attgtcttac acacttggct tttttacttg tgtaagcgaa aaactttgta ggcaagcaac
    30061 aaattagaag aaaagttggc acatatcttg catattatat atacgtgcag cttttcaaac
    30121 taggaggtta agttaatgaa taacatcatg ttagtttgtt cggccggtat gtccacaagt
    30181 ctgctcgtaa aaaaaatgac agaagctatc gaaaaacaac aagtggatgc tgctgtaata
    30241 gcagttgcag aagctgattt cgacaagtat aaaggcaacg tagatgttgt tttactcgca
    30301 ccacaagttc ggtttttaga gaagaatttg aagcgagtac tggatccatt aggtattcca
    30361 gttgcgatca ttaatggaat tgactatgga acaatggacg gcgaaaaagt gctaaatgat
    30421 gcactagcaa tgattgagaa ataatctcga gttcgagact gcttgaagag gaattaaaca
    30481 caagttcgat aaatgaaaaa ggatgtgtaa acaatggaat tagaacaaac aattatgcaa
    30541 ttaatcgtac acgggggaaa cgctaaaagt gacgcaatgc tagcaatcga agcggcaaaa
    30601 aaaggggatt ttgacgcggc agatgagcaa atcaaaagtg cagaagcagc actacttgaa
    30661 gcgcatcatt cacaaacttc attaattcaa ggggaagcac gcggcgaaaa agcagaagta
    30721 tctttactac tagttcacgc acaagatcac ttaatgaatg ctattacttt taaagattta
    30781 gcaaaagaaa ttgttgattt ataccgttct aaataagctt ttgaagggat gatttaaatg
    30841 agaaaattag gaatatccgt atttccgcaa cacgtagcgc ttgaagaatc attagaatat
    30901 attgaaacag ctgcaaaata tggttttagc cgtatcttca cttgcttgat ttctgctaat
    30961 gatgaagctg aatttgctaa attagaaacc atttgcaaac gcgcaaaaga attaggattt
    31021 gacgttattg ctgatgttga tcctactgta tttgaatcgt taaatatcac ttataaagaa
    31081 ttagatcgtt tcaaagagct gggtctagct ggattacgcc tagatttagg tttctctggt
    31141 tccgaagagg cagcaatgtc ctttgatgat acggacttga aaatcgagct aaacattagt
    31201 aatggtactc gctacgttga aaatatccta tcttaccaag caaacgtagg aaatatcatt
    31261 ggttgtcaca acttttatcc aagaaaatac accggtcttt ccagagagca tttcttgcgc
    31321 acgagtaaac aattcaaaga cttaaaccta cgtacagctg ctttcatatc ttctaacagt
    31381 ggcgaatttg gcccttggtt tgttgtagac ggcggacttc caacaatgga agaacatcgc
    31441 ggagtggaca ttactgtgca agcaaaagac ctttggaaca ctggcctgat tgatgacgtc
    31501 atcgttggga acatgttcgc ttcagaagac gaattacgcg ctttaagcga attaaaccgt
    31561 aatgaattac aattagcagt agagttttta gacggtgcaa cagacgtgga aaaagaaatc
    31621 gttttaacac aaaaacattt caatcgtggc gatgcttccg agtatgtgtt acgttcaaca
    31681 atgacgcgtg ttaatttcaa acaattcgat ttccctgcac acgacacaaa tactattgca
    31741 aaaggcgatg tgactatcga taacgacggc tacgaacgct acaaaggcga aatgcaagta
    31801 gcacttcaag aaatggaaaa ctccggcaac accaatatcg ttgctcgaat tgttccagaa
    31861 gaacgttatc tactagacac cattctaccg tggcaacatt ttagattggt tgagaagaag
    31921 aaataataaa aattacaagt taaaaaacgt ctgcaatcca tttttcaatg ttgattgcag
    31981 acgttttatt ttgtcgaaaa ttaatatgtt gcttgattta ttctttacat ttcccaatca
    32041 acccatacaa aaacaactgc actatctccg cttgtttctc ctcaagttct tcctctggga
    32101 ctgtgaaacc taaaccatta attgcttcaa taaaaagttg aatagattga tccgaaagac
    32161 ggttatcaat aattttttct tgcttgccga tagcgatgta tttcatataa atctcatttt
    32221 taagtgcatt aatattattc actaacagcg tgataaattg cgcgtctttg cttgcttctt
    32281 gcgatataaa tttacttaaa gacagattta tttctgcatt acagagctgg agagcccgct
    32341 ctaatttttg cgtgaatgtt ccttctgatg ctaaaatttc ttccgctaaa gttatggtat
    32401 cttgcataat aatgctagca cattcaccaa caagcgcttc tttacttcca aaataattat
    32461 aaatagacac ttgcgaaaca tctgcgaggg cggcaatatc tttaatactt acatcagaaa
    32521 aaccttgttc tccaaataat gaaagagctg cctgaataat tgcagtcttc ttttttagcg
    32581 ttcttttttc ataattattc atatcctaaa cacatcccta agctaatctt atctttagta
    32641 ataatataac atagaaactt tta
//
LOCUS       DASEAA010000011        31787 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.011, whole genome shotgun sequence.
ACCESSION   DASEAA010000011 DASEAA010000000
VERSION     DASEAA010000011.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 31787)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 31787)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..31787
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.011"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..419
                     /locus_tag="U0342_000441"
     CDS             <1..419
                     /locus_tag="U0342_000441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEM2421803.1"
                     /translation="LSVIIIDIDYFKRVNDTYGHLVGNGVLSTFSQMLLKISFPPNTL
                     ISRIGGEEFAIILPNINVSETEHLAEKIRRKVEKIDVPIVASGSVITISAGIANYDGR
                     NYPNPNELLNAADQALYNAKRNGRNQVHIRETEPVV"
     gene            445..1572
                     /locus_tag="U0342_000442"
     CDS             445..1572
                     /locus_tag="U0342_000442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEM2421804.1"
                     /translation="MFELVNSYIDSLALFLAILFIQGMSFRKIRQYRPNWFQNGGRRL
                     FLSILLGVYYGLAGIYFIYEGAYENNPVIYTNMRILILMVTSVFGGRVPLIFAYLVML
                     FGRISFDIASPVTSRYVILMTLIFAACLLVTFWKKQRFSRFVALIILNFPAILYYFVN
                     NFDEGRILQGFEIIEYFLLFFVTALLVFYACNYIDKSNLVIQNLTETAMTDSLTNLPN
                     MRFFTQQFGWIFAKSQKRKKSLSLFIIDIDHFKEINDFHGHQAGNTVLAQFSSILKNR
                     TFPPRTMFARIGGEEFAVLLQNVGTEQAALIADFFREEVERAKFPYNPASGKVTVSIG
                     VASASSNFSTTESLFEAADQALYQAKQNGRNQIAVHQGELE"
     gene            1569..2573
                     /locus_tag="U0342_000443"
     CDS             1569..2573
                     /locus_tag="U0342_000443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside transferase"
                     /protein_id="HEM2421805.1"
                     /translation="MKRFILIFILIILIGAGFFFFLRPEPKKTVSAPKETTPTSTSVQ
                     TYVKENYTAKNGLIVDYKNAQEPHYLAESIGLYMEYLVEVNDSKTFQEQVSHLEKNFI
                     TEDNFIKWEATDATTTNAIVDDFRITEALYQASEKFIFPSYKKMADKILANTKKYSAE
                     QGVPVDFYDFVHKKKADTLHLSYLNIQAMQQINYRDKAYLPIQTVNADPFFTEVFQNE
                     QFQYADPSEVNMIDQMLIAMAYFDENGDVEPNFDNFLQTELASKGKVYARYQRETKNP
                     SSENESTAVYAFLTQYFNKTNQAKNGKITKELLEKMDTSNPETTHFFDYINKEITLKK
                     "
     gene            2592..3275
                     /locus_tag="U0342_000444"
     CDS             2592..3275
                     /locus_tag="U0342_000444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEM2421806.1"
                     /translation="MKKPTVREIIDQNHFDTIYEPIVVVENTQIFGYESLTRLKTDHW
                     NAISDFIEEAEQDGLQKAFELLTLHNAVKRFNKSGDTPLFVNISYDTFLENQEELHDT
                     LLDNGKIVFEFLETSKLPQERMNDLEKQLLQFQKKHETKFAIDDFGSGYADLHRVFAH
                     HSDFVKTDRLLLRDLFESDGKKIFFEQLHNYVKKHHKSLIVEGVETKEQLEFLQEIGI
                     PYAQGYYFH"
     gene            3386..5029
                     /locus_tag="U0342_000445"
     CDS             3386..5029
                     /locus_tag="U0342_000445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent malic enzyme"
                     /protein_id="HEM2421807.1"
                     /translation="MTVKPGFDYMNNPLLNKGTAFSKEERASYQLDGLLPPIIETIEQ
                     QAVRIETQIENLETPLHKHQLLTNLYNENRTLYYYVVTKNVTDYLPIIYTPTIGDAVI
                     QYHKEYTAPDEALFIDAFAPEKLSASIKNYAKNNPNIDMIVITDGEGVLGIGDWGVNG
                     VKIAVGKLAVYTVAAGLAPDRVLPVVIDAGTNNETLLNDPLYLGNKRPRLSESEYDAF
                     IASFVNVMKEVFPKAILHWEDFGRANASRILHNYRDKICTFNDDIQGTGAMVVAAVLA
                     TIQVSKIPLSEQKIIIFGAGTAGIGIADQLSAQWMRETGLPFESAKKHFYLVDRNGLV
                     LDNMTDLTTGQKKYAHPSTEWSNVPTDTLENLMEAVHPTMLIGCSGVTGAFKESIVKK
                     MTQYTERPAILPLSNPTKLAEATASDLIQWTDGKALIVTGSPSKPVEYQHTTYEIGQA
                     NNALLYPGLGLGALVTRAKYITDGMLAAASMAVAEQISPNKAGAALLPHVRTLRETSR
                     AVAIAVANQAIKENIHQVELTNVTEAIEREMWQPIYKGV"
     gene            5032..6039
                     /locus_tag="U0342_000446"
     CDS             5032..6039
                     /locus_tag="U0342_000446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-lactamase family protein"
                     /protein_id="HEM2421808.1"
                     /translation="MFYKTKQSLDQLVQNGSTPGISYQIKTNYLEENNIMGLKSVFPE
                     AEILPRTTENIYDIASLTKVIATTTRILQLIEQQRFQLNDPIQMYLPDFRYNNVTILH
                     LLTHSSGLAQNIPNFSMNNREDVIRYVYATPQINIPGTVVTYADANFLLLGYLISKMD
                     GNYEKAIQNNILEPLSMTNTSFHPANKKQVIPTELDQTRGLIQGDVHDFKAWTAKSGT
                     GHAGLFSTLSDLSKFRDALMLQHGAPILSEKTWQLMQINHTPGLNRSRGLGWDLRGDS
                     VLYHTGFTGTFMVLDLKHQASLIVLSNRVHPSRANPNFVDKRDSIVDTFLEEVANTTE
                     V"
     gene            6272..8551
                     /gene="pflB"
                     /locus_tag="U0342_000447"
     CDS             6272..8551
                     /gene="pflB"
                     /locus_tag="U0342_000447"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM2421809.1"
                     /translation="MTKAWDGFKGTAWQENISVGQFVQDNYTPYDGDESFLEKSTPRT
                     TKLNEKINKLVEEMDAKGGVLDMDNAIVSNVASHKAGYVDQENEVIVGLQTDKPFKLA
                     FMPNGGLRTAEQCLTDNGYSIDQELHDFYVKNRSTANDGIFRAYTDDIKRARHSHIVS
                     GLPDAYSRGRIIGLYQKPALYGVDRLIAEKQQDLKKIAISSDENIRLREEIWLQIKAL
                     KDLIVLGNEYGLELGRPAENATEAVQWTYMGYLASIKQANGAASSFGRIPIFLDIYIQ
                     RDLEKGIITEFDAQELIEQLTLKLRMVRFARTDGYNELYASNPTFVTTSMAGMGADGR
                     HRVTKTDYRFLHCLDNLGNSAEPNLTVLWDARLPESFKEYCMKMSVKHSSIQYENDKL
                     MQEEGYGDMQCISCCVSPLNPEADKDKGETHNLQYFGARVNVLKCLLGAINGGKDDLH
                     KNQVFDVVEPITTEYLEYEEVLEKFDKSMDWLTDTYVDAMNIIHFMTDKYNYESMQMA
                     FLPSKVTANMGFGICGFANVVDSLSAIKHAKVKTIRDEDGFVYDYEVEGDFPRYGEND
                     DRADDIAVMVLKMFKDKLDSHKLYKDSEATVSVLTITSNVAYSKQCGNSPVHKGPVFD
                     ENGKIVKEPEFFSPGANPSNKAKGGFLDNLASLSKLPFHYANDGISLTIQGAPKMFGK
                     TTEEQHHNLVGILDGYFTKGGQHINLNVLNHDEVIEKIKAGIPVILRISGYCLNTKDL
                     NEEQKMELCQRMFHEKLIG"
     gene            complement(8599..9864)
                     /locus_tag="U0342_000448"
     CDS             complement(8599..9864)
                     /locus_tag="U0342_000448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2421810.1"
                     /translation="MDYDVIVIGGGPSGLMAAISAAEKNKRVLLIEKGPKLGRKLIMS
                     GGGRCNVTNRRPAEEIIKHIPGNGRFLYSAFHAFDNEDIIRFFERLGVALKEEDHGRM
                     FPVSNSARSVAEAMIQRMEKLGVKIYMQTAVKQVDYEDGHVKGVTLKDGQEISASAVI
                     VAVGGKSVPRTGSTGDGYAWAKKAGHTITELYPTEVPITSSEPFIKQKVLQGTSLRDV
                     SLSVLNAKGKPIITHQMDMIFTHFGVSGPAALRCSMFVLRELKKTGASTVKMRLDLFP
                     NVSAAELSKDVYKLLEENPKKALKNSLSSLLQEKMLLFLLEKADLDETADYKQVSPKK
                     IEQFIQLLKDFTFEVNGTLDFEKAFVTGGGVSVKEIKPKEMQSKLMEGLFFCGEILDI
                     NGYTGGYNITCALVTGHTAGAYAAEVSNA"
     gene            complement(9974..10657)
                     /locus_tag="U0342_000449"
     CDS             complement(9974..10657)
                     /locus_tag="U0342_000449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metallopeptidase"
                     /protein_id="HEM2421811.1"
                     /translation="MSFSQYIIYFIIVAAIPLWAQYRVKTTYAHYSKVGVANGLTGAE
                     VARHILDTNGLTNVPVHETKGILSDHYDPRKKAVFLSEANFRGRSIAGAAVAAHEVGH
                     AIQDQQDYAFMRFRSALVPVTMFSSNISWVFLIIGMLANVASFMLLGIILMAVGVLFQ
                     LITLPVEFDASKRALVQLESGGLVASSELPQAKKVLSAAAMTYVAAMAVAVLELLRLL
                     LIFTNMNRN"
     gene            complement(10744..11340)
                     /locus_tag="U0342_000450"
     CDS             complement(10744..11340)
                     /locus_tag="U0342_000450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1405 domain-containing protein"
                     /protein_id="HEM2421812.1"
                     /translation="MLYSLLANRAFLRLLFFGNLLGAIYGYIWYLPQLQMTEPRFWLF
                     VPDSPTAILFFTLALVAFLGKKHWPLMEALGFVCLVKYGLWAVGMNIFYMIDQGMLVW
                     GSVALILTHGFMAVEGILYAPFYRFRIGHFMIAAVWVFHNDVIDYVFGQMPIYMGLEK
                     YLPEIGYATFWLTVFVLWFVYDKTIKNKHLTLEFPHDE"
     gene            complement(11428..11973)
                     /locus_tag="U0342_000451"
     CDS             complement(11428..11973)
                     /locus_tag="U0342_000451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpiB family protein"
                     /protein_id="HEM2421813.1"
                     /translation="MKASISIDEKKDFIRWFLNKHQMKTREAMWVLNYIAGHDQIVKY
                     VHFVDNLEGCARGLSLSAHGVESEPFLFFKGNIMTTDPEKAFHDIRLNWDEELYVELH
                     FEEAMSSPEYALVREDNPFTAVKLADEEKEMADALIYQSVHQFSREKVLQQIDEALDT
                     RDEAAFHKLVRILQQMDTEKE"
     gene            complement(12009..13262)
                     /locus_tag="U0342_000452"
     CDS             complement(12009..13262)
                     /locus_tag="U0342_000452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM2421814.1"
                     /translation="MELANKMLHALEHEDMALAKKYFDEVVQAGTDEEQYYLAEELFT
                     LGFLDETEDLYELLLAKYKDEGELLVRAAEVALEKDDIDSAQDYLEKVNKEDEAYIES
                     LLVLADLYQMQGLFEVSEQKLLEAKQMAPNEPIIDFALGEYYLSQARFASAVQSYQTA
                     VEAGLTIISNGAVSVYERIAEAFAASGAFEEALSYYERALEDKESVDTLFGMGLTAYQ
                     AKDYTKAIHALEHLREHDPSYTTLYSYLAKSYEENGEPEKAIAVLRDGLTQDEFNKEM
                     FLEAGKLAVTLRLPEEAEEFYRQAIVLDEEYSEAIMQLNKLLLAKEDYEGVIELVEGL
                     GEEVISEPQIFWDVSVAYQETEQYNKAKANYELAYSHFTNNPTFLKEYGLFLREEGEY
                     AKSQEVLRNYLELEPEDTEILSLFD"
     gene            complement(13394..14680)
                     /gene="aroA"
                     /locus_tag="U0342_000453"
     CDS             complement(13394..14680)
                     /gene="aroA"
                     /locus_tag="U0342_000453"
                     /EC_number="2.5.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoshikimate 1-carboxyvinyltransferase"
                     /protein_id="HEM2421815.1"
                     /translation="MKLITNKQGLVGAITVPGDKSMSHRSIMFGAIAEGKTVIRHFLR
                     ADDCLGTIKAFKALGVKIEETEEEIIVHGTGFDGLKQADGPLDIGNSGTTIRLMMGIL
                     AGRDFDTVILGDESIAKRPMNRVMLPLQQMGAKMHGKDGSEFAPITINGKQSLKRMEY
                     HMPVASAQVKSAIIFAALQAEGETIIHEKEKTRDHTEHMIRQFGGEIEMDGLTIRVKG
                     GQTFTGQEMTVPGDVSSAAFFIVAGLITPGSEIELTHVGLNPTRTGIFDVVEQMGGSL
                     VVKDSSRSTGKLAGTVVVKTSDLKGTEIGGDIIPRLIDEIPVIALLATQAEGTTIIKD
                     AAELKVKETNRIDAVATELNKMGADITPTEDGLIIRGKTPLHAANVTSYGDHRIGMML
                     QIAALLVEEGDVELERPEAVSVSYPTFFEDIRSLLK"
     gene            complement(14694..15797)
                     /locus_tag="U0342_000454"
     CDS             complement(14694..15797)
                     /locus_tag="U0342_000454"
                     /EC_number="1.3.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prephenate dehydrogenase"
                     /protein_id="HEM2421816.1"
                     /translation="MKGTVVIVGLGLIGGSIALAIKAKHPEAHIIGIDVSYHSLEVGK
                     SLGVIDEIGESILIDGPKADLLVFCCPVKETEQLLTRLPGLRLKENVIVTDTGSTKGT
                     IMEASTALRESGITFIGGHPMAGSHKSGVRAAKELLFENAYYLLTPTKDVAEDKVAEL
                     RTWLSGTNAKFLVLSPNEHDEITGMLSHLPHIVAAALVNQTQSFTEEHPAAFRLAAGG
                     FRDITRVASSDPRMWTDISISNQKTLTKQLTIWRDSMNEALEMLESEDASSIYAFFDG
                     AKEFRDSLPVHQGGAIPSFYDLFVDVPDYPGVISEVTRYLGEEEISLTNIKILETRED
                     IFGVLQITFQSDEDRDRAKRCIETRSNYTCHYE"
     gene            complement(15818..16900)
                     /gene="hisC"
                     /locus_tag="U0342_000455"
     CDS             complement(15818..16900)
                     /gene="hisC"
                     /locus_tag="U0342_000455"
                     /EC_number="2.6.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465449.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphate transaminase"
                     /protein_id="HEM2421817.1"
                     /translation="MKWKKSLTGLSSYKPGKREEEVMAELGLTKITKLSSNENPLGTS
                     PKVAELQANSSVETEIYPDGWASSLRTVVADFYQLEEEELIFTAGVDELIELLTRVLL
                     DTTKNTVMATPTFVQYRQNALIEGAEVREIPLLVDGAHDLDGMLNAIDDNTTIVWVCN
                     PNNPTGNYIDLADIQAFLDKVPSDVLVVLDEAYIEYVTPQPEKHEKLIRTYKNLIITR
                     TFSKIYGLASARVGYGIADKAIIEQLNIVRPPFNTTSIGQKLAIEAIKDQAFIEACRT
                     SNANGIKQYEAFAKRFEQVKLYPANGNFVLIDLGIEAGTIFSYLEKNGYITRSGAALG
                     FPTAVRITIGKEEENSAVIALLEKLL"
     gene            complement(16900..17274)
                     /gene="aroH"
                     /locus_tag="U0342_000456"
     CDS             complement(16900..17274)
                     /gene="aroH"
                     /locus_tag="U0342_000456"
                     /EC_number="5.4.99.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate mutase"
                     /protein_id="HEM2421818.1"
                     /translation="MRAIRGATTIETNSPEAIYAATKELFEEILTQNEITDSEQLTSV
                     IITVTEDIFAAFPAKAVRETPGFEYVPVMGMQEIPVPNSLPMCIRFMVFTDLHKPLEA
                     INHVYLRGAKVLRPDLVKEEDA"
     gene            complement(17271..18368)
                     /locus_tag="U0342_000457"
     CDS             complement(17271..18368)
                     /locus_tag="U0342_000457"
                     /EC_number="4.2.3.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-dehydroquinate synthase"
                     /protein_id="HEM2421819.1"
                     /translation="MPEITVRAKSKTYPVYINEFALEDVREKWTESLAKFSHVFVLTD
                     EHVAELHKAKLDAVLADLPVVTYYVAPNGEEAKTFRVYEDVMTKLIETGLDRKAVLIA
                     FGGGVIGDLGGFVAATYMRGIPFYQVPTTVLAHDSAVGGKVAINHPLGKNMIGNFYQP
                     EAVIYDTQFFATLPEREMRSGFAEMIKHALISDQTLLRALMDTFTEPKDFYTKDLTPF
                     LQRGIEIKANIVAQDETEQGVRAYLNFGHTFGHALEAYGNFGKWLHGEAITYGMIYAL
                     TMSETIYGLDFDLAEFKTWLKQLGYDTTFDATVPFNKILENMRHDKKTTFNEISMVLL
                     EEIGEPVIFKAEDDLIFETYKRVMRNGGNGI"
     gene            complement(18371..19537)
                     /gene="aroC"
                     /locus_tag="U0342_000458"
     CDS             complement(18371..19537)
                     /gene="aroC"
                     /locus_tag="U0342_000458"
                     /EC_number="4.2.3.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chorismate synthase"
                     /protein_id="HEM2421820.1"
                     /translation="MRYLTAGESHGPGLTTIIEGLPAGMPLLAEDVNKELKRRQGGHG
                     RGARMRIEKDQVQITAGIRHGKTLGAPVAMFVENKDWKHWETVMSIEPVPEKNEKSRR
                     VSRPRPGHADLVGGMKYGHNDMRNVLERSSARETTVRVAAGAVAKKLLHELGIEVAGH
                     VLEIGGTRANLTRDYAVSEIQETSEASPVRCLDGVAAEEMMQKIDDAKKNGDTIGGIV
                     EVVVGGVPAGLGSYVQWDKKLDAKIARAIVSINAFKGAEFGVGFEAARKPGSEVMDEI
                     LWSKEDGYTRRTNNLGGFEGGMTNGMPIVVRGVMKPIPTLYKPLQSVDIDSKETFNAS
                     VERSDSCAVPAASVVAEAVVAWEVAVAVLEKFDGDRFDTLKKHVEEHRNLTKEF"
     gene            complement(19741..20184)
                     /gene="ndk"
                     /locus_tag="U0342_000459"
     CDS             complement(19741..20184)
                     /gene="ndk"
                     /locus_tag="U0342_000459"
                     /EC_number="2.7.4.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside-diphosphate kinase"
                     /protein_id="HEM2421821.1"
                     /translation="MEQTYVMVKPDGVERGLIGEIVTRIEKKGLKIVAGKLMQIDREL
                     AEKHYAEHIGKSFFEDLIGFITSGPVFAMVLEGDDAIATARRMMGKTNPLEADPGTIR
                     ADYAVHTNRNVIHGSDSPESAKREIQLFFAPQEILSYQKAIDTWI"
     gene            complement(20203..21168)
                     /gene="hepT"
                     /locus_tag="U0342_000460"
     CDS             complement(20203..21168)
                     /gene="hepT"
                     /locus_tag="U0342_000460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component II"
                     /protein_id="HEM2421822.1"
                     /translation="MKLNFLYANMQKDIDSVEKELKKALSGAAAETTSDAALHLLEAG
                     GKRIRPMFVCLSARLAPNADFDAVKNASVAIELIHMASIVHDDVVDNADLRRGRETIK
                     SKWGNHIAMYTGDFLFAKSLEYMTEIKDVAAHKMLSHVTVELSTGEIEQLKDKYNFDQ
                     SVRNYLRRIKRKTALLIAASCGLGGVVSGQSEADYQKLYRFGYYVGMAFQITDDVLDF
                     VGTEKELGKPAGEDLRQGNVTLPVFFAMEDPFLKKRISQVTEETPAEEIAVLVEEVKK
                     AGAKQAEDVATAYLKKAVEILDSLPQVPELKPLKQIVRVLDKRNY"
     gene            complement(21179..21892)
                     /gene="menG"
                     /locus_tag="U0342_000461"
     CDS             complement(21179..21892)
                     /gene="menG"
                     /locus_tag="U0342_000461"
                     /EC_number="2.1.1.163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="demethylmenaquinone methyltransferase"
                     /protein_id="HEM2421823.1"
                     /translation="MTETKEEKVHKVFEKISPSYDRMNSVISFKLHVKWRKETMKLMR
                     VQKGTNVLDVCCGTADWSIMMAEEIGPEGHVTGLDFSENMLKVGREKVKEADLHNVEL
                     IHGNAMELPFPDNSFDYVTIGFGLRNVPDYMQVLREMYRVLKPGGQLACIDTSQPNIP
                     GWKQVFNAYFRYVMPVFGKFFAKSYKEYSWLQESTREFPGMARLAEMFQEAGFSYVRY
                     ISHSGGASATHFGFKKKEQ"
     gene            complement(21915..22682)
                     /locus_tag="U0342_000462"
     CDS             complement(21915..22682)
                     /locus_tag="U0342_000462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenyl diphosphate synthase component 1"
                     /protein_id="HEM2421824.1"
                     /translation="MTYQAREAGLKEVEQLVHEQAVYQYLQENNEGGQMDKDQMLFLH
                     EAISGSDLTDASAYRVVSATLYMILAHDTHEKIDEPGDVVQLTRKEQELTVLAGDFYS
                     ALYYRTLAELEMIPLLRALQSGVQETNTAKTNIYQLHVATDEEYLSQLTLTNAAIFAK
                     FAKYFMKDDTFIALGCQFFLLKRLQTELATYKEIGASRLKRAFDHGYFAKEAVSNFES
                     WLVAIIHDVKSEVKRLKDKSEPLSNILGKRIIEVIND"
     gene            complement(22739..23308)
                     /gene="folE"
                     /locus_tag="U0342_000463"
     CDS             complement(22739..23308)
                     /gene="folE"
                     /locus_tag="U0342_000463"
                     /EC_number="3.5.4.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP cyclohydrolase I FolE"
                     /protein_id="HEM2421825.1"
                     /translation="MEQIDKQKIADAVKVILEAVGENPEREGLIDTPMRVARMYEEVF
                     AGLKKDPSVHFDTIFEEQHEELVLVKDIRFSSMCEHHLVPFFGVAHVAYLPQNGRVAG
                     LSKLARVVDDVSRRPQLQERITTTVAEIMMEKLKPLGVMVIMEAEHMCMTIRGVNKPG
                     TKTITSAVRGAFKNDDKLRSEVLALIKHN"
     gene            complement(23544..23819)
                     /locus_tag="U0342_000464"
     CDS             complement(23544..23819)
                     /locus_tag="U0342_000464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465458.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HU family DNA-binding protein"
                     /protein_id="HEM2421826.1"
                     /translation="MANKTDLVNSVAELADLSKKDAAKAVEAVFETIQTSLSKGEKVQ
                     LIGFGNFEVRERAARKGRNPRTKEEIDIPASKVPAFKPGKALKEAVK"
     gene            complement(24230..25210)
                     /locus_tag="U0342_000465"
     CDS             complement(24230..25210)
                     /locus_tag="U0342_000465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-protein phosphatase"
                     /protein_id="HEM2421827.1"
                     /translation="MEVTRTDKAVTLTWNKEEVSEGTVVFVSSSPKLEDNSDPVFKVT
                     NDVDHYSYDTKDIPIYFFLETPNGDRTTVSERILPLESVFNFRDMGGYASKNGKHVKW
                     GKLYRSSNLVNINENDAALLQKLHIKWICDLRSSSEVQAQPTPAIEGVLNKHIPIGTA
                     KNEETKLPVTNDTTIYEPLMGESYRVFVQSVEGFREIFTEVLEDAKAGLPFVFHCTAG
                     KDRTGVLGALLLTLLDVPEKTIFDDYAITNRYQDDILQEMGGIVALFSNGTEKIDLET
                     FRPMAEARPEYLEIAFDEMKKQYGSVANYLEKGIGITAAEKAAFQKEMLE"
     gene            complement(25313..26329)
                     /locus_tag="U0342_000466"
     CDS             complement(25313..26329)
                     /locus_tag="U0342_000466"
                     /EC_number="1.1.1.94"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent glycerol-3-phosphate
                     dehydrogenase"
                     /protein_id="HEM2421828.1"
                     /translation="MTQKKVAILGAGSWGTGLALVLADNNHQPVIWGNLDKIVNEINE
                     SHTNSHYLPDIILPTEVKATLSLDEAIDGAEIVVIAIPTNAMRIVCKQLNEALKEPTI
                     LVHVSKGIEPETNLRMSEVIEDEIDASKRKALVVLSGPSHAEEVALRHPTTLCASCKD
                     LSAAEIVQDRFINNNLRIYTNDDVIGAEIGGALKNIIALGAGISDGLGYGDNAKAALM
                     TRGMAEITRLGVAVGSNPQTFYGLTGIGDLIVTCTSVHSRNWRAGNMLGKGENLDEVL
                     EKMGMVVEGVRTAKAVHGWAKKLDIDMPITESIYAILFENKDAREAVDLLMGREKKIE
                     KESF"
     gene            complement(26352..27662)
                     /gene="der"
                     /locus_tag="U0342_000467"
     CDS             complement(26352..27662)
                     /gene="der"
                     /locus_tag="U0342_000467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase Der"
                     /protein_id="HEM2421829.1"
                     /translation="MAKPVVAIVGRPNVGKSTIFNRIVGERVSIVEDVPGVTRDRIYN
                     SAEWLGKEFNIIDTGGIDLSDEPFLEQIRAQAEIAIDEADVIIFITNGREGVTDADEQ
                     VAKILYRSNKPIVLAINKVDNPEMRDQIYDFYSLGFGEPYPISGSHGLGLGDMLDAVR
                     AHFPKEEEEEYPDDTVKFSLIGRPNVGKSSILNALLGEDRVIVSDIAGTTRDAIDTTY
                     TFDGQDYVMIDTAGMRKRGKVYESTEKYSVLRAMRAIERSDVVLVVINAEEGIREQDK
                     RIAGYAHDAGRAIIIVVNKWDAINKDEKTINVWTEDIREQFQFLSYAPIVFVSAKTKQ
                     RLNNLFPLINQVSDNHSLRVQSSMLNDVISDAVAMNPSPMDKGKRLKIFYTTQVAVKP
                     PTFVVFVNDPELMHFSYERFLENRIREAFPFEGTPIRVIARKRK"
     gene            complement(27806..28951)
                     /gene="rpsA"
                     /locus_tag="U0342_000468"
     CDS             complement(27806..28951)
                     /gene="rpsA"
                     /locus_tag="U0342_000468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S1"
                     /protein_id="HEM2421830.1"
                     /translation="MSEDLFDVEVRNFEEGDKVTGTVTSVEDKQVYVGIPGSKLDGVV
                     PISELSNIHVETASDVVSVGDTLDLIVTKVEDDILVLSKRKVDAEKASDDIKAKFESG
                     EVFEAVVSDVVKGGLVVDLGVRAFVPASLVEDHFVEDFADYKGTTLTFKVVEFEPENN
                     RVILSHRAVVETEKASQKQALLSEIKEGDVIEGTVQRLANFGAFVDIGGVDGLVHISQ
                     ISYKHIATPQEALEEGQKVTVKVIGIDPENERISLSIKATLPGPWDGIAEKAPVGSVL
                     EGKVVRLVTFGAFVEIFPGVEGLVHISQISHEHIGTPQEVLSEGQTVEVKVLEVNEAD
                     KRLSLSIKELKDAPVEEADYELPEENTGFQMSDLIGDKLKGLQNDDK"
     gene            complement(29310..29984)
                     /locus_tag="U0342_000469"
     CDS             complement(29310..29984)
                     /locus_tag="U0342_000469"
                     /EC_number="2.7.4.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(d)CMP kinase"
                     /protein_id="HEM2421831.1"
                     /translation="MTKKICIAIDGPAAAGKSTVAKIVAKKLRFVYIDTGAMYRAVTY
                     IALKNNIAYEDEKAIATLLQKTVIRFEPGEVQQVFVGEENVTEVIRSLEVTNHVSIVA
                     AHPSIREALQERQQVFATEGGIVMDGRDIGTAVLPNAELKIFLLASVEERAERRYKEN
                     MAKGFAGDLGQLKKEIEERDHLDYTRTHSPLKKADDAIEVDTTSMSIDEVANKILSLA
                     ELKINN"
     gene            complement(30000..30962)
                     /locus_tag="U0342_000470"
     CDS             complement(30000..30962)
                     /locus_tag="U0342_000470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="asparaginase"
                     /protein_id="HEM2421832.1"
                     /translation="MAKVALITTGGTIASKKTASGKLASGELSGEELAALCQLPTEIQ
                     IDIYSTFQLPSMHITLPDLISLKQLIESIFMDETYDGIVVTHGTDSLEETAYFLDLAV
                     TDARPIVVTGSQRAPEEPGTDAYVNIRHAIYTACEINLRQAGTVVVFNERIFAARYVK
                     KVHASNIQGFSAFGFGYLGIIDNDQVFLYQKPLEHECFDIRLDLPEVVVIKCYIGADG
                     LFIDAAIDSGVSGIVLEGVGRGQVAPKMMPAIIRALDAGIPVVITTSAEEGNVYTTYD
                     YEGSTFDLYNRGVILGKDYDSKKARMKLMVLLASQEEINQTNFR"
     gene            complement(31043..31762)
                     /locus_tag="U0342_000471"
     CDS             complement(31043..31762)
                     /locus_tag="U0342_000471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465465.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2421833.1"
                     /translation="MVKTRKEKREYEEPADYDMSSEGQDEFNNEPPMLSRSDSRRGKK
                     KTIFRYPLLNLLIVFFLLIPIVIVIVFVTVQNMGSSNEVKTETESTVNVSDNTQSKEE
                     KEKAKKAAEEKAAAEKAAEEKKAAEEKAAADKKKQEEDAVKAANAKKEQEAAEEKAAA
                     DKAAAEKAAAEKAEQQKANEASQQKAGGSHTVKAGDTLYSIARSTYGQAGAAAGVEKI
                     KQANGLGSDNVPVGTVLTIPQ"
BASE COUNT         9429 a         7038 c         5305 g        10015 t
ORIGIN      
        1 atctaagtgt gattattatt gatattgatt attttaaacg ggtaaatgat acatatggcc
       61 atttagtcgg aaatggggtt ttatctactt ttagtcaaat gctattaaaa atcagcttcc
      121 cgccaaacac attgatatca aggattggcg gcgaggaatt cgccattatt ttgccaaata
      181 ttaatgtcag tgaaacggag catttggcgg agaaaatccg acgtaaagtc gaaaaaattg
      241 atgttccgat tgttgcttct ggctccgtta ttactatttc tgctggtatc gcaaattatg
      301 acggcagaaa ttatccaaat ccgaacgagc tactaaatgc agccgatcaa gcgctatata
      361 atgcgaaacg aaatggacga aaccaagtgc atattcgcga aacagaacca gttgtttaag
      421 agagtaaaaa ggagatgagt ccatttgttc gaactagtta attcatacat agatagttta
      481 gcgctctttc tcgctatcct ttttatccaa gggatgtctt ttcgaaaaat aagacaatat
      541 cgcccaaatt ggtttcaaaa tggtggtaga cggctatttc tttccatcct actaggcgtc
      601 tactatggtt tagcaggtat ttattttatt tatgaaggtg cttacgaaaa taatcccgtt
      661 atttacacga atatgcggat tttgattttg atggtaacaa gtgttttcgg tggccgcgtt
      721 ccactcattt tcgcctattt agtaatgctt tttggtcgga ttagttttga tattgcttct
      781 cctgttacta gtcgctatgt cattttgatg acgctcattt ttgccgcgtg tttacttgtt
      841 actttttgga aaaaacaacg cttttcgaga tttgttgctt taatcatttt aaacttccca
      901 gcgattcttt attatttcgt gaataatttt gacgaaggac gaatcctgca aggttttgag
      961 attatcgagt atttcctgct attctttgta accgccttac tggtatttta cgcctgcaat
     1021 tacattgata aaagtaatct cgttatccaa aatttgacgg aaactgcgat gacggatagt
     1081 ttaactaatt taccaaacat gcgctttttc acccaacagt ttggttggat ttttgcgaaa
     1141 tcgcaaaaaa ggaaaaaatc tttatctctt ttcatcattg atattgatca ttttaaagaa
     1201 ataaacgatt ttcatggtca tcaagctggt aataccgttc ttgctcagtt tagtagcatt
     1261 cttaaaaatc gcaccttccc gccaagaacc atgtttgcac gaattggtgg cgaagaattt
     1321 gctgttttac ttcaaaacgt tggtacagag caagctgctt taattgctga ttttttccgt
     1381 gaagaagtgg aacgagcgaa gtttccttat aatcccgcaa gtggcaaagt tactgtatct
     1441 ataggtgttg cttctgctag ttccaacttt tcaacaaccg aatcactttt cgaagctgct
     1501 gaccaagcgc tctatcaagc aaaacaaaac ggccgcaatc aaattgctgt tcatcagggg
     1561 gaactcgaat gaaacgattc atcttaattt tcattttaat tatccttatt ggcgccggat
     1621 ttttcttttt ccttcgtcca gaacctaaaa aaacagtgag tgcaccaaaa gaaaccacac
     1681 ccacttccac ctctgttcaa acgtatgtga aagaaaacta tactgcaaaa aacggtttaa
     1741 ttgtggatta caaaaatgcg caagaaccgc attatttagc cgaaagcatc ggactttata
     1801 tggaatattt ggtcgaagtg aatgatagta aaactttcca agaacaagta agtcatttag
     1861 aaaagaattt tataaccgaa gataacttta ttaaatggga agcaaccgac gcaacaacga
     1921 ctaatgcgat tgtagatgat ttccgtatta cagaagcact ttatcaagcg agcgaaaaat
     1981 ttattttccc gtcctacaaa aaaatggcag ataaaatcct agccaacacc aaaaaatata
     2041 gcgctgaaca aggtgttcca gtagactttt acgattttgt tcataagaaa aaagcagata
     2101 cgctccattt aagctatcta aatatccaag cgatgcaaca gattaattat cgagataaag
     2161 cctatctacc aattcaaact gttaatgctg acccattttt tacagaagtg tttcaaaatg
     2221 aacagtttca atatgctgac cctagtgaag ttaatatgat tgatcaaatg ctcattgcga
     2281 tggcttattt tgatgaaaat ggtgatgtag agccaaattt cgataatttt ttacaaacag
     2341 aattagcttc taaaggaaaa gtttatgcac gttatcaaag agaaacaaag aatccaagtt
     2401 cagaaaacga atctaccgcc gtttatgcct ttttgacaca gtattttaac aagacaaatc
     2461 aagctaaaaa tggtaaaatc accaaagagt tattagagaa aatggacacg tcaaatccag
     2521 aaacaaccca ttttttcgat tatataaata aagaaataac tcttaagaaa taacggaaag
     2581 aagttggaca aatgaaaaag cccactgtac gtgagattat tgatcaaaat cactttgata
     2641 caatatatga accgattgtt gttgtagaaa acacacaaat tttcggatac gagtcactca
     2701 cccgcttaaa aacagatcac tggaatgcga ttagtgattt tatcgaagaa gcggaacagg
     2761 atggtctgca aaaagcattt gagctgctca cgcttcataa cgcagtgaaa cgctttaaca
     2821 aaagcggaga cacgccacta tttgtcaata tttcgtatga tacattttta gaaaatcaag
     2881 aagagttgca cgatacccta cttgataacg ggaaaatagt ttttgaattt ttggaaacat
     2941 ccaagttacc acaagaacga atgaacgact tagaaaaaca actgcttcaa ttccagaaaa
     3001 aacacgaaac taaatttgct attgatgatt ttggctccgg ttatgcggac ttgcatcgcg
     3061 tttttgcgca ccattctgat tttgtcaaaa ccgatcgctt attactacga gatttatttg
     3121 agagcgatgg caaaaaaatc ttctttgagc aacttcataa ttatgttaaa aagcatcata
     3181 aatccttaat tgtcgaggga gtggaaacaa aagagcagct agaattcctt caagaaatcg
     3241 gcattcccta tgcgcaaggt tattattttc attaaaaata aaaaagaaaa tctgcttatt
     3301 gtcaggtttt ctttttgttt ggaatcagtt gttattcttc tttcccccat gtaaaataga
     3361 atagaataaa aaggagtgct gaaaaatgac tgtaaaacca ggttttgact atatgaataa
     3421 tccattatta aataaaggaa ccgctttttc aaaagaagaa agagcaagct atcaattgga
     3481 cggattactg ccaccaatta tcgaaacaat tgaacaacaa gccgtgcgca tcgagacgca
     3541 aatagaaaat ttagaaacac ctttacataa acatcagctt ttaacaaact tatataatga
     3601 aaatcgcacc ctctactatt atgtcgtaac aaaaaacgtg actgactatt tgccaattat
     3661 ttatacacca actatcggcg acgcagttat ccagtaccat aaagaataca ctgcgccgga
     3721 tgaagcctta tttattgatg cctttgcacc cgaaaaatta agcgcatcaa taaaaaacta
     3781 cgcaaaaaat aatccgaata ttgatatgat tgttataaca gatggtgagg gtgtgcttgg
     3841 aattggcgac tggggtgtga atggtgtgaa aatcgctgtt ggaaaattag cggtttatac
     3901 ggttgcagct ggacttgcac cagaccgtgt tctgccagtt gttattgacg ccggaacgaa
     3961 caacgaaaca cttcttaacg atccactata tctaggaaat aaacgccccc gcctttcaga
     4021 aagtgaatat gacgctttta ttgcttcttt tgttaatgtt atgaaagaag ttttcccgaa
     4081 agccatcctt cactgggaag actttggacg cgcgaatgca agtcgtattc tgcataatta
     4141 ccgcgataaa atttgtacat ttaacgatga tattcaaggt acaggggcca tggtggttgc
     4201 tgctgttctt gcgacgatcc aagtttccaa aataccatta agcgagcaaa agattattat
     4261 tttcggggct ggaactgctg gaatcggtat cgctgatcaa cttagtgctc agtggatgcg
     4321 tgaaactggt cttccttttg aatcggcgaa aaagcatttt tatttagtcg accgaaatgg
     4381 tttagtgctt gataatatga ccgacttaac taccgggcaa aagaaatatg cacatccgtc
     4441 gactgagtgg tctaacgtgc ccacagatac gttagaaaac ttaatggaag cagttcatcc
     4501 aacaatgtta atcggctgtt ctggtgtcac cggtgccttt aaagagagca tcgtcaaaaa
     4561 aatgacccag tatacagaac gaccagcgat tttgccactt tctaatccaa caaaattagc
     4621 cgaagcaact gcttctgatt taattcagtg gacagatgga aaagcgctta ttgttacagg
     4681 tagcccttcc aaaccagtag aatatcaaca tactacttat gaaatcggtc aagcgaacaa
     4741 tgcacttctc tatccggggc tcggactagg tgctcttgtc actcgtgcga aatatattac
     4801 agatggtatg ctcgctgctg cttccatggc tgtcgctgag cagatttcac caaacaaagc
     4861 aggcgcagcc cttctaccac atgtgcgcac ccttcgcgaa acatcgcgtg cagtagccat
     4921 cgctgtcgct aaccaagcta ttaaagaaaa catccatcaa gtcgaattaa cgaatgtcac
     4981 cgaagctatc gagcgggaaa tgtggcaacc tatttataaa ggagtttaga tatgttttac
     5041 aaaacgaagc aatcactaga tcaactcgtc caaaacggct ccactccggg aattagttat
     5101 caaataaaaa ctaattatct ggaagaaaat aacatcatgg gattaaaatc cgtttttcca
     5161 gaagcagaaa tcttaccaag aacaacagaa aacatttatg atatcgcttc tttgaccaaa
     5221 gtaattgcta cgactactcg tattttgcaa cttatcgaac aacaaagatt ccaattaaac
     5281 gaccctattc aaatgtattt accagatttc cggtacaata atgttacgat tttacattta
     5341 ctaacacata gctccggcct tgcacaaaat atccctaact tctcaatgaa caaccgagag
     5401 gacgttattc gttatgtgta tgccacgcca caaattaata ttcctggaac cgtagtcaca
     5461 tacgccgatg ctaattttct tttactcggt tatttgatta gtaaaatgga cggcaattat
     5521 gaaaaagcca tccaaaacaa tattttagaa cccctgagta tgacaaatac aagttttcat
     5581 cccgcaaata aaaaacaagt catcccaacc gaacttgacc aaacgcgcgg tttaattcaa
     5641 ggtgatgtcc atgattttaa agcttggact gccaaatcag gcacaggcca tgccggactt
     5701 tttagcaccc taagcgatct ttccaaattc cgagatgcgc tcatgctaca acacggtgct
     5761 ccaattcttt ctgaaaaaac ttggcaactg atgcaaataa atcatacccc tggtctcaat
     5821 agaagtcgcg ggctaggctg ggatctacgc ggtgattctg tcttatatca taccggattc
     5881 actggtactt ttatggtgct cgatttgaaa caccaagcca gtttaattgt tctttctaac
     5941 cgcgttcatc caagccgagc caacccaaat ttcgttgaca aacgtgacag cattgtcgac
     6001 acttttttag aagaagttgc aaacacaacg gaagtctagc atattagcta ggcttctttt
     6061 tctgcctttt gcctcccgcc ctacttcgat aaaaactgta ttaacacagc tgttgaaagc
     6121 cttttctagt tatataaaag aaatttattt tctttctggt tttatattgt tttcgttttc
     6181 acaaaggagt atgctgttca atgaagaaag attctaaaga cttgtttctg gctttaagtg
     6241 aaaaggaaca caattgaagg aggaaattat aatgacaaaa gcatgggatg gttttaaagg
     6301 aaccgcatgg caagaaaaca ttagtgtagg gcaattcgtt caagacaact acactcctta
     6361 cgatggcgat gaaagctttt tagaaaagag cacaccaaga acaacgaaac taaatgaaaa
     6421 aataaataaa ctagtagaag aaatggatgc aaaaggcggc gtacttgata tggataacgc
     6481 tatcgtatcc aatgttgcat ctcacaaagc tggttacgtg gatcaagaaa atgaagttat
     6541 tgttggttta caaacagaca aaccattcaa attagcattt atgccgaatg gtggtcttag
     6601 aacagccgaa caatgtttaa cagacaacgg ctattccatt gatcaagaat tacatgactt
     6661 ctacgtaaaa aatcgttcta cagcaaatga tggtattttc agagcatata cagacgatat
     6721 caaacgtgcg cgtcactccc atatcgttag tggtcttcct gatgcatact ctcgcggaag
     6781 aatcatcggc ttgtaccaaa aaccagcact ttacggtgtg gatcgtttaa tagcagaaaa
     6841 acaacaagac ttgaaaaaaa ttgcgatttc ttctgatgaa aacattcgtt tacgtgaaga
     6901 aatttggtta caaatcaaag cacttaaaga cttaatcgtt ttaggtaacg aatacggttt
     6961 agaacttgga cgtccagctg aaaatgcaac agaagcggta caatggactt acatgggcta
     7021 ccttgcttct atcaaacaag caaacggtgc tgcaagctca ttcggtcgta ttccgatttt
     7081 ccttgatatc tatatccaac gcgatttaga aaaaggcatt atcactgaat tcgatgcaca
     7141 agaattaatc gaacaattaa cccttaaatt aagaatggtt cgttttgcaa gaacagatgg
     7201 ttacaacgaa ctttacgctt ccaatccaac attcgttaca acttcaatgg ctggtatggg
     7261 cgcagacggt cgtcatcgtg tgactaaaac agattatcgt ttcttacact gcttagataa
     7321 cctaggaaac tcagcagaac caaacttaac tgtcctatgg gatgctcgtt taccagaaag
     7381 ctttaaagaa tattgtatga aaatgagtgt aaaacattcc tccattcaat acgaaaatga
     7441 taaattaatg caagaagaag gctacggcga tatgcaatgt atcagctgtt gcgttagccc
     7501 acttaaccca gaagcagaca aagacaaagg tgaaacacat aacctgcaat atttcggtgc
     7561 tcgtgtcaac gtactgaaat gtcttcttgg agctatcaac ggcggtaaag atgatcttca
     7621 caaaaaccaa gtattcgacg ttgtagaacc aattacaacc gaataccttg aatacgaaga
     7681 agtactagaa aaattcgata aatcaatgga ctggttaaca gacacttatg tagatgcgat
     7741 gaacatcatt cactttatga cagataaata caactatgaa agtatgcaaa tggccttctt
     7801 accatctaaa gtaacagcca acatgggctt cggtatttgt ggattcgcta acgtagtaga
     7861 tagcctaagt gccatcaaac atgccaaagt aaaaactatc cgtgacgaag atggttttgt
     7921 atatgactat gaagtagaag gcgacttccc tcgttacggt gaaaatgatg accgtgccga
     7981 cgatatcgct gtaatggttc ttaaaatgtt caaagacaaa ttagactccc ataaactata
     8041 caaagatagt gaagcaaccg tttctgttct aacaatcact tctaacgttg cttactcaaa
     8101 acaatgtggt aactcccccg tgcacaaagg acctgtattt gatgaaaatg gcaaaatcgt
     8161 caaagaacca gaattcttca gcccaggagc taacccttct aacaaagcaa aaggtggttt
     8221 cttagataac cttgctagtc tttctaaatt accattccac tatgcaaatg acggaatctc
     8281 cttaacaatc caaggagctc caaaaatgtt cggtaaaaca acggaagaac aacaccataa
     8341 ccttgttggt attctggatg gttactttac aaaaggtggt caacacatca acttaaacgt
     8401 tcttaaccac gatgaagtaa tcgaaaaaat caaagctggt atcccagtaa tcttacgtat
     8461 cagcggttat tgcttaaata cgaaagatct aaatgaagaa caaaaaatgg aactttgcca
     8521 aagaatgttc cacgaaaaat taatcggtta ataagaaaaa aagaaccaaa tctgcgaata
     8581 acagatttgg ttcttttttt atgcgttcga aacttccgcc gcataagctc ctgccgtgtg
     8641 cccagtcact agcgcacaag taatattata tccacccgta taaccattaa tatctagtat
     8701 ttccccgcag aaaaataatc cttccatcaa cttcgattgc atctcttttg gtttaatttc
     8761 ctttacagaa accccaccac ctgtcacaaa cgctttttca aaatcaagcg tgccattcac
     8821 ttcaaaagtg aaatctttta ataactgaat aaactgctcg atttttttcg ggcttacttg
     8881 tttataatca gccgtttcat ctaagtctgc tttttcaagt aaaaacaata acattttctc
     8941 ttgtaaaagc gaacttaacg aatttttcaa ggctttcttc ggattctctt ctaacaattt
     9001 atacacatct ttcgaaagtt ccgcagcgga tacattcggg aataaatcaa gacgcatctt
     9061 caccgtgcta gcgcctgttt tctttaattc tcgaaggacg aacatactac aacgaagagc
     9121 cgctggtcct gacacaccaa aatgcgtgaa aatcatatcc atttgatgcg taataatcgg
     9181 cttccctttt gcatttaaaa cagaaaggga cacatcacga agcgacgttc cttgtaacac
     9241 tttttgttta ataaaaggct cactagacgt aattggcact tctgtcggat aaagttctgt
     9301 gatggtatgt cctgcttttt tcgcccaagc atagccatct ccggtcgaac cagtccgtgg
     9361 aacagattta ccgccaactg caacaatgac cgcactcgct gaaatttctt ggccgtcttt
     9421 cagcgtcacc cctttcacat gtccatcctc ataatccact tgtttcacgg ctgtttgcat
     9481 gtaaattttt acgcctagtt tttccatccg ctgaatcatt gcctcagcga cagaacgcgc
     9541 gctattcgat acaggaaaca ttctaccgtg gtcttcttct tttaacgcca cgccaagtct
     9601 ttcaaaaaag cgaataatat cttcattatc aaaggcatga aacgcactat ataaaaagcg
     9661 accattacca ggaatatgtt taataatttc ttctgctggt cgcctgttcg ttacattaca
     9721 acgtccgcca ccagacataa ttaatttacg tcccaatttt ggtccttttt caattaatag
     9781 tactcgttta tttttctctg ctgcactgat agccgccata agtccagatg gcccgccacc
     9841 aataacaatt acatcataat ccattgtccc gctcctttac tttatccgtg tttaagtata
     9901 gcaagcattc ggctcagtgc caagcttttt tcaccaaaca aaaaacccaa gaaaaatctc
     9961 aggttttttg attctaattt cgattcatat tcgtaaagat aagtagcaat cttagaagtt
    10021 ctagtacagc tacggccatt gcagcaacat aagtcattgc agcagcactt aatacttttt
    10081 tcgcttgtgg gagttctgaa gatgcgacta gtccgccgct ttctaattga acaagtgccc
    10141 gtttactagc gtcaaattca actggtaacg taattaattg gaaaagtaca cccactgcca
    10201 tcaaaataat ccccagcaac atgaaactag caacgtttgc aagcattccg ataattaaga
    10261 acacccaaga aatattggaa ctaaacattg ttacaggaac aagcgccgaa cgaaaacgca
    10321 taaatgcata atcttgctga tcttgaatcg cgtgtcctac ttcatgggct gcaacagctg
    10381 ccccggcgat agaacgaccg cggaagttag cttcagaaag aaaaaccgct ttttttcgag
    10441 gatcgtagtg gtcacttaat attccttttg tttcatgaac tggaacattc gttaaaccat
    10501 tggtatccaa aatatgacgc gcaacctcgg caccagttaa accatttgcc acaccaactt
    10561 tggaataatg tgcataggta gtttttaccc gatactgtgc ccaaagtgga attgccgcga
    10621 cgataataaa ataaataata tactgactaa acgacattta atcatcttcc tcctactact
    10681 ttttttcggt gaatatcctt atgttcttag tataaattaa ctatcaccaa gactcaacct
    10741 ctttcactca tcatgaggaa attctaatgt taagtgctta ttttttatcg ttttatcata
    10801 tacaaaccat agaacaaata ccgttaacca aaatgtcgca taaccaattt ccggtaagta
    10861 tttttctaac cccatataaa tcggcatttg gccaaataca taatcaatta catcattatg
    10921 aaatacccat accgctgcaa tcataaagtg cccgattcga aaacgataaa acggcgcata
    10981 aagaattcct tctactgcca taaaaccatg cgtcaaaatc aatgccacag agccccaaac
    11041 aagcatccct tggtcaatca tataaaaaat attcatacca actgcccata aaccatactt
    11101 cactaaacat acaaaaccta gtgcctccat taaaggccaa tgctttttcc caagaaaagc
    11161 aactagcgcc aaagtgaaga acaaaatcgc cgttgggcta tcaggtacaa acagccaaaa
    11221 gcgcggctct gtcatttgta attgcggtaa ataccatatg tatccataaa tcgctccaag
    11281 taaattacca aagaaaagta atcgtaaaaa ggcccgattt gcgagtaaac tatataacaa
    11341 tatcccccag ctcccttaaa aaatcctagc acagcaagga aatgatgcat ctttcacatc
    11401 atttccatac taactaggat ttatttctta ttctttttcc gtatccattt gctgtaaaat
    11461 tcgaactaac ttatgaaaag cagcttcatc acgtgtatcc agcgcctcat cgatctgttg
    11521 taatactttt tctcttgaaa attggtgcac agattgataa ataagcgcat ccgccatttc
    11581 tttttcctca tccgcaagct tcactgctgt aaaaggatta tcttcacgaa caagtgcgta
    11641 ttcaggcgaa gacattgcct cttcaaaatg aagttctaca tacaactctt cgtcccaatt
    11701 taaccgaata tcatgaaatg ctttttctgg atcagtcgtc ataatgttac ctttaaaaaa
    11761 taggaacggt tcggattcaa cgccgtgagc actaagtgaa agcccacgcg cacacccttc
    11821 caaattatca acaaaatgaa catattttac aatttgatca tggccagcaa tataatttaa
    11881 aacccacatt gcttctctag tcttcatctg gtgtttattt aaaaaccagc gaataaaatc
    11941 tttcttctcg tctattgaaa tggatgcctt catctttcct cagtcccttc ctgtattctt
    12001 tttagcattt aatcaaataa agataaaatc tctgtgtctt ctggctctag ttctaaatag
    12061 ttacgcaaaa cttcttgtga tttcgcgtac tctccttctt cccttaaaaa taaaccatat
    12121 tcctttaaga aagtaggatt gtttgtaaag tgcgagtatg ccagttcata atttgctttt
    12181 gctttattat attgttctgt ttcctgatat gcaacactta cgtcccagaa aatttgtggt
    12241 tccgaaataa cttcttcccc aaggccttcc actaattcga taaccccttc gtagtcttct
    12301 ttcgcaagta ataatttgtt caactgcata attgcttccg aatattcttc atctagcaca
    12361 attgcttgac gataaaattc ttcggcttct tctggcaaac gtagcgtaac agcaagcttc
    12421 ccagcctcta agaacatttc tttattaaat tcatcttgcg ttaagccgtc ccgaagcact
    12481 gcaatggctt tttccggttc gccgttctcc tcataacttt tcgctaaata agagtagagc
    12541 gttgtgtaag agggatcatg ttcacgcaaa tgttcgagcg catgaatagc tttcgtgtaa
    12601 tcttttgcct gataagccgt taaacccatc ccgaaaagtg tatcaaccga ttccttatct
    12661 tcgagcgcgc gttcatagta agataacgct tcttcaaatg ccccactagc agcaaaagct
    12721 tcagcgatac gttcatatac agacaccgca ccattcgaaa taatcgttaa tcctgcttct
    12781 acagcagttt gataagactg tacagcggat gcgaatcttg cttgcgataa ataatattcc
    12841 ccaagtgcaa aatcaataat cggctcattt ggcgccattt gtttcgcttc gagtaatttc
    12901 tgctcactga cttcgaataa accttgcatc tgatataaat cagctaatac gagcaaactt
    12961 tcaatatatg cttcatcttc tttgtttact ttttctaaat agtcttgcgc agagtcgata
    13021 tcgtcttttt caagtgctac ttcagctgca cggacaagca actcgccctc atccttgtat
    13081 tttgctaata gaagttcgta taaatcttcc gtttcatcta ggaatccaag tgtaaataat
    13141 tcttctgcta aataatattg ttcttcatct gttcccgctt gcactacttc atcaaaatat
    13201 ttcttcgcaa gcgccatatc ttcatgctct aacgcatgta acattttatt agctaattcc
    13261 atttctgcac cttctttaat aataagtcgt ttttctatta taccattact tcactcataa
    13321 gaaaaagtga ttgcctctct taaataaaaa taccagcgct gatgtgatta gcatacagca
    13381 ctggtagaag tgattatttt aaaagtgagc gaatatcttc aaagaaagtc gggtaagaaa
    13441 cagaaactgc ttctgggcgt tctaattcca catcgccttc ctcgacaaga agtgctgcaa
    13501 tttgtagcat catgccaata cggtgatccc cgtagcttgt tacattggcc gcatgaagtg
    13561 gtgttttccc gcggataatt aaaccgtctt cggttggagt aatatctgcg cccattttgt
    13621 ttagttctgt cgcaaccgca tcaatccggt ttgtttcttt tacttttagt tcagcagcgt
    13681 ctttaataat cgtcgttcct tctgcttgtg tcgctaaaag tgcgataacc ggaatttcgt
    13741 caattaaacg aggaataatg tcgccaccga tttccgttcc ttttaaatcg ctagttttaa
    13801 ctacaaccgt acccgctaat ttaccagtac ttctgctaga atctttgaca actaaacttc
    13861 cacccatttg ctcaactaca tcaaaaatcc ctgttctagt agggttcaag ccaacatgcg
    13921 taagttcaat ttcactgccg ggtgtgatta agccagctac gataaagaac gcagcagagg
    13981 aaacatcgcc tggaaccgtc atttcttgcc cagtaaatgt ttggccacct ttgacgcgaa
    14041 tggttaagcc atccatttca atttcaccgc caaattggcg aatcatgtgt tccgtatgat
    14101 cacgagtctt ttctttttca tggataatcg tttcaccttc tgcttgtaaa gctgcaaaaa
    14161 taatcgcgct ctttacttgt gcactagcaa ctggcatatg atattccatg cgttttaatg
    14221 attgcttccc atttatcgta attggagcaa attcagagcc atctttgcca tgcatttttg
    14281 cccccatttg ttgcagtggt agcatgacac ggttcatcgg acgtttcgca attgattcat
    14341 cccctaaaat gactgtgtca aaatctcggc cagctaaaat gcccatcatt aaacgaatcg
    14401 ttgttcccga gttaccaata tcaagtggac catctgcctg ttttagccca tcaaaaccag
    14461 ttccgtgaac aataatttct tcttcggttt cttcaatttt tacacccaat gctttaaatg
    14521 ccttaattgt tccaaggcaa tcatctgcac gtaagaaatg acgaatgacc gtttttcctt
    14581 ctgcaatggc cccgaacata atgctgcgat gggacattga tttatctcca gggactgtga
    14641 ttgcgccaac cagcccttgt ttatttgtaa ttaatttcat cgtcatttct ctcctattcg
    14701 taatggcatg tatagttact tcttgtttca atgcaacgtt tcgcccggtc cctgtcttca
    14761 tccgattgga aagtaatttg taacacaccg aaaatatctt cccgtgtttc caaaatcttg
    14821 atgtttgtta aactgatttc ttcttcgccc agatacctag tcacttcaga aattacccct
    14881 ggataatctg gtacatcgac aaataaatcg taaaaagatg gaatcgcacc accttgatga
    14941 actggaagtg aatctcgaaa ttcttttgcc ccatcaaaaa aggcatatat agaactcgcg
    15001 tcttcacttt caagcatctc aagcgcttcg ttcatactgt ctcgccaaat cgtcagctgt
    15061 ttcgttaacg ttttttggtt gctaatagaa atatccgtcc acattcttgg atcagaagaa
    15121 gcgacccgtg taatatcacg aaatccgcct gccgcaagtc gaaatgctgc aggatgttct
    15181 tctgtaaagc tttgcgtctg gttcactaaa gccgccgcca caatatgcgg taagtggctc
    15241 aacatgccag taatttcatc atgctcattt ggtgataaca ctaagaactt agcattcgta
    15301 ccagacagcc acgtcctaag ttcagccact ttgtcttctg ctacatcttt cgttggtgtt
    15361 aacaaataat aggcattttc aaacaacagt tctttagcag cacggacacc acttttatgc
    15421 gaaccagcca ttggatgacc gccaataaac gtaataccac tttctctaag tgccgtggat
    15481 gcttccatga tggttccttt tgtactacct gtatctgtaa cgatcacatt ttcctttaaa
    15541 cgcagccctg gtaaacgcgt taataactgt tctgtttctt ttaccggaca acaaaaaaca
    15601 agtaaatctg cttttggccc atctattaaa atactttcgc caatttcgtc aatcacaccg
    15661 agagactttc caacttctaa cgaatgatag gaaacgtcaa ttccgatgat atgtgcttct
    15721 gggtgtttgg ctttaatcgc aagggcaata gaaccgccaa ttaacccaag cccaacaata
    15781 actaccgtcc ctttcattca aaaacgcctc caaacactta caataatttt tctaaaagtg
    15841 caattaccgc actattttcc tcttcttttc cgatcgtaat tcgaacagca gttggaaaac
    15901 caagcgccgc gccagaacgc gtaatatagc catttttttc caagtagcta aaaatagttc
    15961 ctgcttcaat tcctaaatct attaaaacaa agttgccatt cgctggatac agttttactt
    16021 gctcaaaacg tttcgcaaac gcttcgtatt gtttaattcc atttgcatta gaagttcggc
    16081 atgcttcaat aaaagcttga tcctttattg cttctattgc taatttttga ccgatgctcg
    16141 ttgtattaaa cggcggacga acgatattta gttgctcaat gattgcttta tccgcaatac
    16201 cataaccaac acgagcgctt gccaaaccat aaattttact aaaggtccgg gtaataatta
    16261 aatttttata agtgcgaatt agtttttcat gtttttcagg ctgcggcgtc acatattcaa
    16321 tatatgcttc atctaaaaca acaagtacat cacttggtac tttatctaaa aacgcttgaa
    16381 tatctgctaa atcaatgtaa ttcccagttg ggttattcgg attgcaaacc caaacaatcg
    16441 tcgtattgtc atcaatcgca ttcaacatac catctaaatc atgcgcacca tccacaagta
    16501 gcggaatttc tcttacttcg gcgccttcga ttaacgcatt ttgacgatac tgcacaaatg
    16561 tcggtgtcgc catcactgta ttttttgtcg tatccagtaa aacccgcgtc aacagttcaa
    16621 tcagttcatc cacaccagct gtaaaaatca gttcctcttc ttccagttgg tagaaatcag
    16681 cgaccactgt acgcaagcta gaagcccagc catctggata aatttctgtt tccacactag
    16741 aattggcttg aagctccgcc acttttggag aagttcccag tgggttttcg ttagatgata
    16801 gtttggtgat tttcgttaaa ccaagttctg ccatcacttc ttcttcgcgt tttccaggtt
    16861 tataagaaga tagacctgta agtgattttt tccatttcat tacgcatcct cctcttttac
    16921 taaatctggg cgcagtactt ttgctcctcg taagtagaca tggttgatgg cttcgagtgg
    16981 tttatgtaga tctgtgaata ccatgaaacg aatgcacatt ggaagcgaat ttggcaccgg
    17041 aatttcttgc atccccatga caggaacata ttcaaagcca ggtgtttcac gcaccgcctt
    17101 agctggaaaa gcggcaaaaa tatcttctgt cactgtaatg atgacggatg ttagttgctc
    17161 actatctgtt atttcatttt gcgttaaaat ttcttcaaat aattctttcg tcgctgcata
    17221 aattgcttcc ggtgaattag tttctattgt cgttgcccct cgaattgctc tcaaatgcca
    17281 ttccctccat ttcgcatcac acgtttgtaa gtttcaaaaa tcaaatcatc ttccgcttta
    17341 aaaataaccg gttctccaat ttcttcgagt aaaaccatac ttatttcatt aaaagttgtt
    17401 tttttatcat gacgcatatt ttccagtatt ttattaaatg gaacagttgc atcaaatgtc
    17461 gtatcatagc ctaactgttt tagccacgtt ttaaattctg ctaaatcgaa atccagtccg
    17521 taaattgtct cactcatcgt gagtgcataa atcatcccat aagtaatcgc ctcgccgtgc
    17581 agccacttgc caaagtttcc gtaggcttca agtgcatgac caaatgtgtg accaaaattc
    17641 aaataagcgc gcacgccttg ctcggtttca tcttgcgcaa cgatatttgc tttaatttca
    17701 atcccacgtt gtaaaaacgg cgtcaaatcc ttcgtataaa agtctttcgg ctccgtaaat
    17761 gtatccatta aggcccgtag taacgtctga tcgctaataa gcgcatgttt aatcatttcc
    17821 gcaaaaccag agcgcatttc ccgttctggc aaagtagcaa agaactgggt atcataaatg
    17881 actgcttctg gctggtaaaa gttcccaatc atgtttttgc caagcggatg attgatcgca
    17941 accttgccac ccacggcact atcatgcgca agaaccgtcg taggcacctg ataaaaagga
    18001 atgcccctca tatacgtagc cgcaacaaaa ccacctaaat caccaataac gcctccacca
    18061 aaagcaatta aaaccgcttt acgatcaaga cctgtttcaa tcaattttgt catcacatct
    18121 tcatatacac gaaacgtttt cgcttcttcc ccgtttggcg ccacataata agtgactaca
    18181 ggtaaatcag cgagaaccgc gtcaagcttt gctttatgaa gttccgccac atgctcgtct
    18241 gtcaaaacaa acacatggga aaatttagct aggctctccg tccacttttc ccggacatct
    18301 tctaatgcga attcattaat atatactggg tatgttttac ttttagcacg gactgtaatt
    18361 tctggcatgt ttaaaactcc ttcgttaagt ttcggtgttc ctccacatgt tttttaagtg
    18421 tgtcaaaacg atcaccatca aatttttcta acacagcaac tgcaacttcc caagcgacaa
    18481 cagcttcagc taccacactt gcagcaggta ctgcacaact atccgaacgt tctacacttg
    18541 cattaaacgt ttcttttgaa tcaatatcca cactttgaag tggtttgtat aatgttggaa
    18601 ttggcttcat tacgccacga acaacaattg gcataccatt ggtcattccg ccttcgaatc
    18661 caccaaggtt atttgtacgt ctcgtgtagc catcttcttt actccataaa atttcatcca
    18721 tcacttcact accaggtttt ctagcagctt caaaaccgac accgaattca gcgcctttaa
    18781 atgcattaat acttacaatc gcacgcgcaa tttttgcatc tagttttttg tcccactgta
    18841 cgtagctacc aagtccagct gggacaccac caactacaac ttctacgata ccgccaatgg
    18901 tgtcgccatt tttcttcgca tcatcaattt tttgcatcat ttcttctgcc gctacgccgt
    18961 ctaaacaacg cactggagaa gcttcggatg tttcttgaat ttcgctaacc gcgtaatcac
    19021 gtgttaagtt cgcacgagtt ccaccaattt caagtacatg accagctact tcaatgccaa
    19081 gttcatgcaa taattttttc gctactgctc cagctgccac acggacagtc gtttcgcgcg
    19141 cgctagaacg ttctagtacg ttacgcatat cgttatgacc atatttcata ccgccaacta
    19201 agtccgcatg tccaggacgt ggacgggata cgcgacggga tttttcattt ttttctggaa
    19261 ctggttcaat gctcataacc gtttcccaat gcttccagtc tttattttca acaaacattg
    19321 ctacaggtgc gcctaatgtt ttaccatgac gaatccctgc tgtgatttgt acttggtctt
    19381 tttcgatacg catccgtgcc ccacgaccat gcccaccttg tcttcttttt agttctttat
    19441 ttacatcttc tgctagtaaa ggcattcctg ctggcaaccc ttcaataatt gttgtaagcc
    19501 ccggtccgtg tgattctcct gccgttaagt atctcatctg ctcatctctc ctttttctat
    19561 ttcagctaga ttttctagcg tttatatttt agcgctttaa agtatatgtg taatatctta
    19621 acatatgcca cgcgagaaaa caatactttc gtttcattct ttcatcttac caaaaaaccg
    19681 catgaaatgg taatttctct ataaaaaaag agcctaggtt tccctaaact ctatactatg
    19741 ttaaatccaa gtgtcgattg ccttttgata acttaaaatt tcctgcggtg caaaaaacaa
    19801 ctgaatttcc cgtttcgcac tttctgggct atccgatcca tgaatcacat ttcgatttgt
    19861 atgtaccgca taatcagcgc gaattgttcc ggggtcagct tctaacggat ttgttttgcc
    19921 catcatacgg cgagctgttg caatcgcatc atctccttct aacaccatcg caaacactgg
    19981 tccagaagta ataaatccaa ttaaatcctc gaaaaaagat tttccaatat gttccgcgta
    20041 atgtttttct gctagttcac ggtcaatttg cattaatttt ccagcaacta tttttaagcc
    20101 ttttttctct attcttgtga caatttcacc aataagtcct cgttctacac catccggctt
    20161 aaccattaca taagtttgtt ccataaagaa tcctccctca cgttaataat ttcttttatc
    20221 taaaacacga acgatttgtt ttaatggttt taattcaggc acttgcggca aagaatccag
    20281 tatttctaca gctttcttta agtaggctgt tgctacatct tcggcctgtt ttgcgcccgc
    20341 ttttttgact tcttccacta aaacagcaat ttcttctgct ggagtttcct ccgtaacctg
    20401 gctgatgcgt ttttttagaa aaggatcttc cattgcaaag aatactggca atgtcacatt
    20461 tccttgtctt aaatcttccc cagctggctt accgagttct ttttctgttc caacaaaatc
    20521 aagtacatca tccgtaattt gaaacgccat gccaacataa taaccaaaac gatataactt
    20581 ctgataatca gcttcacttt gaccagaaac aacaccaccg agtccgcaac tagctgctat
    20641 cagtaaagct gttttccgtt taattcggcg taaataatta cgcacacttt ggtcaaaatt
    20701 atatttatct tttaattgtt cgatttcacc cgtagaaagc tccaccgtaa catgtgatag
    20761 cattttatgc gcagcaacgt ctttaatttc tgtcatatat tccagtgatt tggcaaacaa
    20821 aaaatcaccg gtatacatcg caatatggtt gccccacttc gatttaatcg tctcgcgtcc
    20881 gcgtcttaaa tccgcattat ccaccacatc atcatgcaca atcgacgcca tatgaattaa
    20941 ttcaatcgct acactcgcat tttttactgc atcaaagtct gcattaggag caagtcttgc
    21001 tgataagcaa acgaacattg gtctaattcg ttttccacca gcctctaata aatgaagtgc
    21061 tgcatcagaa gtagtttcag cagctgcgcc agaaagggcc tttttaagtt ctttttcaac
    21121 tgagtcaatg tctttttgca tatttgcata taaaaagtta agtttcatgc ttgccacctt
    21181 attgttcctt ctttttaaat ccaaagtggg ttgcactcgc gccgccactg tgtgaaatat
    21241 atcttacgta tgaaaatccg gcttcttgaa acatttccgc aagtctagcc attcctggaa
    21301 actcacgcgt tgattcttgt aaccagctat attctttata acttttcgca aaaaacttcc
    21361 cgaaaacagg cattacatag cgaaaataag cattaaacac ttgtttccag ccaggaatat
    21421 tgggttgaga cgtatcaata catgccagct gtccacctgg ttttagcaca cggtacattt
    21481 ctcgcagcac ttgcatataa tccggtacat ttctaagccc aaagccaatc gtcacatagt
    21541 caaaactatt atctggaaaa ggtaattcca ttgcattccc atgaataagt tctacattgt
    21601 gcaaatccgc ttcttttact ttttcgcgac caaccttcag catattttca ctaaaatcaa
    21661 gccccgtcac atgaccttca ggaccaattt cttccgccat cataatcgac caatctgccg
    21721 ttccacagca aacatcaaga acattcgtcc ctttttgaac acgcattagc ttcattgtct
    21781 ctttacgcca tttcacatgt agtttaaaac taataacact attcattcgg tcataacttg
    21841 gagaaatttt ctcaaatact ttatgtactt tttcttcttt agtttccgtc atatcccgaa
    21901 tctccttcta tttatcagtc gttaataact tcgatgattc tttttcctag tatattagaa
    21961 agcggttctg atttatcttt caaccgtttc acttcacttt tcacatcatg aataattgct
    22021 actaaccagc tttcaaaatt agatacagct tccttcgcaa aatagccatg atcaaacgcc
    22081 cgcttcaatc tagacgctcc aatttctttg taagtagcaa gttctgtttg gagtcttttg
    22141 agcaaaaaga actgacaacc aagcgcgata aatgtgtcat ctttcataaa atacttcgca
    22201 aacttggcaa aaatagccgc atttgttaac gtaagctgag ataaatactc ttcatctgtt
    22261 gcgacatgta actggtaaat attggttttt gctgtgtttg tttcttgaac cccgctttgc
    22321 aatgctcgaa gcagtggaat catttctaat tcagcaagtg tgcggtaata gagagcacta
    22381 taaaaatccc cagcgagaac cgtcaactct tgctccttac gtgttagctg tacaacatcg
    22441 cctggttcat caattttttc atgtgtatca tgcgctaaaa tcatgtacag cgttgcacta
    22501 acgacgcgat atgcagaagc atcagtcaaa tcagagccag aaatcgcttc atgaagaaat
    22561 agcatttgat ctttgtccat ttgcccgcct tcattattct cttgtaaata ttgatagact
    22621 gcttgctcat gtaccaactg ctccacttcc tttagcccag cctctcttgc ctgataagtc
    22681 atttaacaat cccctttgaa tctccttatt atgtaaaaaa ttataccata aaggatattt
    22741 aattatgctt aattaaagct aaaacttcac ttctaagctt atcgtcattt ttaaaagcac
    22801 cacgaacagc acttgtaatt gtttttgttc caggtttatt tacaccgcgg atagtcatgc
    22861 acatatgctc tgcttccatg atgaccatta cacccaacgg ttttagtttt tccatcataa
    22921 tttctgcaac agtcgttgta atccgttctt gtaactgcgg gcggcgactt acatcatcca
    22981 ctacgcgagc aagtttacta agaccagcaa ctcttccatt ttgtggtaag tatgctacat
    23041 gagctactcc aaaaaaaggg acaaggtgat gttcacacat agacgaaaag cgaatgtctt
    23101 tcacaagtac taattcttca tgttgttctt caaaaatagt atcgaaatga acagaaggat
    23161 cttttttcag cccagcgaaa acttcttcat acatacgagc tactcgcatt ggtgtatcaa
    23221 tcagtccttc acgttctgga ttttctccta ctgcttctaa aataactttt accgcgtcag
    23281 caatcttttg cttgtctatt tgctccatcc ttaattcccc tatcttttta gcattatata
    23341 ccttgtatat cttaacacag ccaaacttca aggtaaattt aatttgcttg aataagtgat
    23401 aataataggg gtttttttgc tttcgtaagt atattcccta tttctaaaac agaaaaccac
    23461 taaaaatggg cataaaaaaa ctagcctagc ttaattataa aattaaggcc agactagagt
    23521 tagtgcttaa aagtctatgt agcttattta acagcttctt taagcgcttt accaggtttg
    23581 aaagctggta ctttacttgc agggatgtcg atttcttctt tagtacgagg gttacgacct
    23641 ttacgggcag cacgttcacg tacttcaaag ttaccaaatc cgattaattg aactttttca
    23701 cctttagata aagaagtttg aatagtttcg aatacagctt ctactgcttt cgctgcgtct
    23761 tttttagaaa gatcagctag ttcagcaacg ctatttacta aatcagtttt atttgccatt
    23821 gtgttttcac ctccttcaca gaatactaca aaataagcag gtacaagata tacctgtatt
    23881 tctctttttt tccaaaaaca aaaatcaatt tggaaatcta aggagaatca tgactgaaat
    23941 ggcttaacta caagccttaa cagtaattct gataaaagat tatcacataa tccctacaac
    24001 tgcaaggaat aatgccaaac tgacaccgtt tcttaacatt ttcaatcaca aatattttct
    24061 ttaaatgctt gaaaacgtga tagtatcaac ctgttatcca taatactaac ttggaagcct
    24121 tagaatagca agcgatacca ccacaattag ctaaaatagt tcttttttca taaaaatatg
    24181 ggtaaatttg cgtctattac ctgaaaactc taggtttctg agcctagttt tattctaaca
    24241 tttctttttg gaaagctgct ttttctgccg cagtaattcc aattcctttt tctaaataat
    24301 tagctactga gccatattgt tttttcattt catcaaaggc aatttccaaa tattcaggac
    24361 gagcttctgc cattggcctg aacgtttcta aatcaatttt ttcggttcca ttcgaaaaga
    24421 gcgccacgat tcctcccatt tcttgtaaaa tgtcgtcctg gtagcgatta gtgatggcgt
    24481 aatcgtcgaa aatcgttttt tctggtacat ctaacaatgt tagtaataat gcccctagga
    24541 cgcctgtacg gtcttttcct gcagtgcaat ggaaaacgaa cggcaatcca gcttttgcat
    24601 cttctaatac ttctgtaaaa atttctctaa agccttccac tgattgcaca aacacgcggt
    24661 agctttcacc catcagcggt tcataaatag ttgtatcatt tgttaccggt agctttgttt
    24721 cttcattttt ggcagtacca ataggaatat gtttatttag cacaccttca attgcaggcg
    24781 taggttgtgc ttgtacttcc gaactactgc gcaaatcaca aatccattta atatgtagtt
    24841 tttgaagcaa agctgcatcg ttctcattaa tattcactaa attagaagag cgatataact
    24901 taccccattt tacatgcttg ccgtttttgg atgcataacc gcccatatct cgaaaattga
    24961 atacactttc aagtggcaaa attcgttctg aaacagtggt tctatctccg tttggtgtct
    25021 ctaaaaagaa ataaatagga atatcctttg tgtcatatga atagtgatca acatcatttg
    25081 ttactttgaa aacaggatca ctattatcct ctagtttagg actgctactt acaaaaacga
    25141 ctgtgccttc gctgacttct tctttgttcc aagttagtgt tacggcttta tctgtacgag
    25201 taacttccat attatccacc tactttttat tatttggctc ttctgctaca ttttagcata
    25261 tttcataaaa aaagagccaa aataagcgga tagcccattc tgactctttc tattaaaatg
    25321 attctttttc gatctttttt tcgcgaccca ttaataaatc aactgcttcg cgagcatctt
    25381 tattttcgaa taaaatcgcg taaatcgatt cggtaattgg catatcaata tctagttttt
    25441 tcgcccaacc atgtactgct ttagctgttc gaacaccttc aacgaccatg cccatttttt
    25501 ctaatacttc atctaaattc tcgcctttac ctagcatatt accagcacgc caattacgtg
    25561 aatgcacact agtacaagta acgattaagt caccaatacc tgtcaatccg taaaatgttt
    25621 gcggattaga gccaacagca acaccgagac gagtgatttc tgccatcccg cgagtcatta
    25681 gtgccgcttt agcattatcg ccataaccaa ggccgtcaga aattcctgca cctagtgcga
    25741 taatattttt cagcgcgcca ccaatttctg caccaatcac atcatcattc gtataaatac
    25801 gcaaattatt attgatgaaa cgatcttgaa caatttctgc agctgataaa tctttacagc
    25861 tcgcacaaag tgttgtcgga tgacgaagcg caacttcttc cgcatgactt ggtccagaaa
    25921 gaacaacaag cgctttacgt ttggacgcat ctatttcgtc ttcaatcact tcggacattc
    25981 gaagatttgt ttctggttca atacctttac tcacatgcac taaaatggtt ggttctttta
    26041 gcgcttcatt taactgctta caaacgattc gcatcgcatt tgttggaata gcaattacga
    26101 caatttctgc accatcaata gcttcatcaa gtgacaatgt cgcttttacc tcagttggta
    26161 aaataatatc tggcaaatag tgactattcg tgtgcgattc gttaatttca ttcacaattt
    26221 tatctaagtt tccccaaata actggttgat gattattatc agctaggaca agtgcaagac
    26281 ctgttcccca acttccagcg ccaagaatag ctactttttt ctgtgtcatt atatttttcc
    26341 tcccgaaaac tttacttacg cttacgagca atcactcgaa ttggcgtacc ctcaaacgga
    26401 aatgcctctc taatccggtt ttctaagaaa cgttcatacg agaaatgcat tagttctgga
    26461 tcattaacaa atacaacaaa cgtcggtggt tttacagcca cttgtgttgt atagaaaatc
    26521 ttcagtcgtt tacctttatc cataggtgat gggttcattg caacggcatc actaataaca
    26581 tcattcagca tacttgattg tacacgtaat gaatggttat cgcttacttg attaataagt
    26641 gggaataggt tatttaagcg ttgttttgtt ttcgcagata caaagacaat tggtgcatag
    26701 cttaagaatt ggaattgctc ccgaatatct tccgtccata cgttaattgt tttttcatct
    26761 ttgttaattg catcccattt gtttactaca ataataatcg cacgtccggc atcatgcgca
    26821 tatccagcaa ttcgtttatc ttgctcacga ataccttctt ctgcgttgat aaccacaaga
    26881 acaacgtctg agcgttcaat tgctctcatt gcacgtaaaa cactatattt ctctgtgctt
    26941 tcatacactt tcccacgttt tctcattccg gctgtatcaa tcatgacata atcttggcca
    27001 tcgaaagtat aagttgtatc aattgcatca cgagttgtac ccgcaatatc agaaacaata
    27061 acacgatctt ctccaagaag tgcatttaaa atagaagatt taccaacatt tggtcgacca
    27121 atcaaactaa atttcactgt atcgtctgga tattcttcct cttcttcttt tggaaaatga
    27181 gcccgaacag catcaagcat gtcgccaagc cctagcccat gtgaaccaga aattggatac
    27241 ggttcaccaa acccaagaga ataaaagtca taaatttgat ctcgcatttc tgggttatct
    27301 actttattaa tcgctaaaac aattggttta ttagaccggt aaagaatttt tgctacttgt
    27361 tcgtctgcat cggtaacccc ttcacgacca ttggtaataa aaataattac gtctgcttca
    27421 tcaattgcga tttccgcttg tgcgcgaatt tgctctaaga atggttcatc ggaaagatca
    27481 ataccacctg tatcaataat gttaaattct tttccaagcc attccgctga attatatatg
    27541 cggtcacgtg tcacaccggg aacatcttcc actatggaaa cacgttcacc aacgattctg
    27601 ttaaaaatag tcgatttgcc aacgtttgga cgtccgacaa tcgctacaac tggttttgcc
    27661 attatttcac cttctttttt ctcgaatcct atttatcaaa ctttctttag tttatcagta
    27721 aaacagctta ctggcaatga aaagttcgat ttgaaaaaga aaaagagccc atgggaacag
    27781 tctccctagg ctcttttgcg tacaattatt tatcgtcgtt ttgaagacct tttaatttat
    27841 caccaattaa atcgctcatt tggaatccag tgttttcttc tggaagttca taatcagctt
    27901 cttcaactgg agcatctttt aattctttaa tgcttaatga taaacgtttg tctgcttcat
    27961 ttacttcaag tactttcact tctactgttt gcccttctga aaggacttct tgtggtgtcc
    28021 caatatgttc atgagaaatt tgagaaatat gaaccaaacc ttctactcct gggaatattt
    28081 ccacaaatgc accaaaagta actaggcgta ctacttttcc ttctaaaaca gaaccaactg
    28141 gcgctttttc ggcaatgccg tcccaaggtc caggtaaagt cgctttaata gaaagagaaa
    28201 tacgttcatt ttcaggatca atcccaataa ctttaaccgt tactttttga ccttcttcta
    28261 acgcttcttg tggtgttgca atatgtttat aagaaatttg tgagatgtga actaatccgt
    28321 ccacgccacc aatatcaacg aatgcaccaa aattagctaa acgttgaaca gtaccttcaa
    28381 tcacgtcgcc ttctttgatt tcgctcagta gcgcttgctt ttgactagct ttttctgttt
    28441 ccacaactgc acgatggctt aaaatcactc ggttattttc tggttcaaat tctactactt
    28501 tgaaagtaag agtagttcct ttgtaatctg cgaaatcttc cacaaaatgg tcttccacta
    28561 aagaagctgg aacgaacgca cgaacaccta ggtcgacaac taatccacct ttaacaacat
    28621 cactgactac tgcttcaaaa acttcaccag attcgaattt agctttaata tcatcagatg
    28681 ctttttctgc atccactttt cgtttagata aaacaagtat atcgtcttct actttagtga
    28741 caatcaaatc aagtgtgtcg ccaacgctca caacgtcaga agctgtctcc acatgtatat
    28801 tggaaagttc acttattgga acgacaccat caagtttgct acctggaata ccaacataaa
    28861 cttgtttatc ttccacgctt gtaactgtgc cagtgacttt gtctccttct tcaaaatttc
    28921 taacttccac atcaaataaa tcttcagaca tgtgtagccc tccattcgtt agtcgaattt
    28981 taggaatttc taattcagaa gcaaccttca cgcttgcttc atctgcttga ctagttttcc
    29041 tagataggca aattccgatt aaataaagaa aaatatcaaa tacaccttct gtaaaactga
    29101 tcttccagct agaaaatcct ttcaagatac ttttcacaaa gtaaaaaatc tctcttataa
    29161 catcctacaa atccagacat ttgtcaagct cttttaaggg gttggaaaag cctacagggc
    29221 gtgaaatcgc ttcgtttgtt tagcctttca cggttaaatt aaaaaagtgc tacatttcca
    29281 tttagttaag aaaatgtagc acttttttgc taattattga tttttagttc tgctagtgaa
    29341 agaattttat tggctacttc atcaatcgac attgatgttg tatctacttc aatggcatca
    29401 tctgcttttt ttaaggggga gtgtgttctt gtataatcta aatgatctcg ttcttcaatt
    29461 tcttttttga gttggcctaa atctccagca aaacctttcg ccatattctc tttatagcga
    29521 cgttccgctc gttcttctac gcttgctagt aagaatattt ttagttcggc gttaggaaga
    29581 actgcagtac cgatatcacg accatccatt acaattccgc cttctgtagc aaaaacttgt
    29641 tgacgttctt ggagtgcttc acgaatagac gggtgtgcgg caacgataga tacatgattg
    29701 gtcacttcta aagaacgaat cacttctgtg acattttctt cacctacaaa tacttgttgt
    29761 acttcgccag gttcaaaacg aataactgtt ttttggagta aagtagctat agctttttcg
    29821 tcttcatatg cgatgttatt ttttaaagcg atataggtta ctgcacgata catggcaccc
    29881 gtatcaatat agacaaagcg caattttttt gcaacgattt tcgccaccgt gcttttccca
    29941 gccgcagccg gtccatcaat cgcgatacat atctttttag tcataaaata aaactccttt
    30001 tatctgaaat tggtttgatt aatttcttct tgtgatgcta aaagtaccat taatttcatc
    30061 cgtgcttttt tgctatcgta atcttttcct aaaataacgc cacgattata caagtcaaac
    30121 gtgctacctt cataatcata tgtagtatat acatttcctt cttccgcact tgttgttatg
    30181 acaactggaa ttcccgcatc taatgctctg ataatagctg gcatcatttt tggcgccact
    30241 tgccctcgtc caacaccttc taaaacgatt cctgatacgc cactatctat cgctgcatca
    30301 ataaacaaac catctgcacc aatataacat ttaatcacaa ccacttctgg taaatcaagg
    30361 cgaatatcaa aacactcatg ctccagtggt ttttgataca gaaaaacttg gtcattatca
    30421 ataataccca gatagccaaa cccaaaagca ctaaaacctt gtatgttgga tgcatgaact
    30481 ttttttacat atctcgctgc aaaaattcgt tcattgaaaa caacgactgt cccagcttga
    30541 cgtaaattta tttcacacgc tgtataaatt gcatgacgaa tattaacata ggcatctgtc
    30601 cctggctcct caggtgctcg ctgagatcca gttactacga ttggtcgcgc atcggttact
    30661 gcaagatcaa gaaaataggc tgtttcttct aatgaatctg ttccgtgcgt cactactatt
    30721 ccatcatatg tttcatccat gaagatagat tcgataagtt gcttcagact gattaaatca
    30781 ggtagcgtaa tgtgcataga tggtaattgg aaagtagaat agatatcaat ttgaatttct
    30841 gttggtaatt ggcataatgc agctaattct tctccagata attctcctga tgcaagtttt
    30901 cctgatgctg ttttcttact tgcaattgta ccgcctgttg taattagtgc tacttttgcc
    30961 acggttattc ccccctacat tttcctttta aacaaacaaa tgagtctcgg aagcgtttcc
    31021 cagacccatt cagtgttgtt tattactgtg gaattgttag aactgtacca actggaacat
    31081 tgtcacttcc tagtccattg gcttgtttaa ttttttctac tccagcagct gcccccgctt
    31141 gtccatatgt tgaacgtgca atactataaa gggtgtcccc agctttaaca gtatgagatc
    31201 ctccagcttt ttgctgtgag gcttcattcg ctttttgctg ctcagctttt tcagcagcag
    31261 ctttctcggc agcagctttg tcagccgcag ctttttcttc ggcagcttct tgttcttttt
    31321 ttgcatttgc agctttcact gcatcttctt cttgtttttt cttatctgcc gcagcttttt
    31381 cttcggcagc ttttttctct tcagctgcct tttcagccgc tgctttttct tcggcagctt
    31441 ttttcgcttt ttctttttct tctttagatt gcgtgttgtc agatacattt acggttgatt
    31501 ctgtttctgt tttcacttca tttgatgaac ccatattttg tactgttaca aatacaatca
    31561 cgataacgat tggtattaat agaaaaaaaa caatcaataa attaagtaat gggtatctaa
    31621 aaatggtttt cttttttcct cttctgctat cagaacggga taacattggc ggttcattgt
    31681 tgaattcatc ttgaccttca gaactcatat cataatcagc cggttcttcg tattcccgtt
    31741 tttcttttct tgtttttacc actcaaagtt cctcctttag tgctttc
//
LOCUS       DASEAA010000012        30640 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.012, whole genome shotgun sequence.
ACCESSION   DASEAA010000012 DASEAA010000000
VERSION     DASEAA010000012.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 30640)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30640)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30640
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.012"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..374)
                     /locus_tag="U0342_000472"
     CDS             complement(<1..374)
                     /locus_tag="U0342_000472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421834.1"
                     /translation="MLNLQWEDLDCLEVEGDLEKILDYSYNAWNLDQRNTRYFVRTFF
                     IKWYLIIDDFDIEDYETQEKQLMNMYEYGEKKLLDVTEVKWIIGYCISLNPEYFMKQG
                     DNYEEVRIKGDKYLHELALANP"
     gene            complement(401..613)
                     /locus_tag="U0342_000473"
     CDS             complement(401..613)
                     /locus_tag="U0342_000473"
                     /inference="COORDINATES: protein motif:HMM:NF026872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421835.1"
                     /translation="MRKKHDWNSITDGSWGQVRNLINRTMRNGKESAYGSARQKTMKY
                     GKRTIVVTFKRVEGKIRISDAWVKTK"
     gene            complement(695..1150)
                     /locus_tag="U0342_000474"
     CDS             complement(695..1150)
                     /locus_tag="U0342_000474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HEM2421836.1"
                     /translation="MTTNYHYNADDDVIALTEEAGKVVAEYAYDAWGNVLKNTASTEE
                     AKANSYGYKGYTYDKEIKQYYLMARYYEPEQVAFTAVDPDPGDEDDPQTMNGYNYASN
                     NPVMLADPDVLWAGVLFRFAAKGGKTAWKYAKKGAKKSFKEHEKMVEGI"
     gene            complement(1287..2075)
                     /locus_tag="U0342_000475"
     CDS             complement(1287..2075)
                     /locus_tag="U0342_000475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421837.1"
                     /translation="MLKIKKQAQSIYAFKETGGEVLNFQIEKNCLKLFSGEEISCEIN
                     DEIISDRYFKVKEVKLSDEKVCIFCHDGVYDYLLISCIGKHFKYPLGEGVADFLVLND
                     EAYVIYSEEGMFGSEENLPIAQLGLIKIDIFTGEITGLLDDSILETLIDVQSMSCKNK
                     RIRILCYEENDDDFTLDYDLTSKKVQNKVVINYTVDELLSVGDNFYARYQNHIYKVDE
                     SMEITKEIIIDKKVYDEAYAISTGYSEVVLESENEFNIVQLSKL"
     gene            complement(2092..8730)
                     /locus_tag="U0342_000476"
     CDS             complement(2092..8730)
                     /locus_tag="U0342_000476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RHS repeat-associated core domain-containing
                     protein"
                     /protein_id="HEM2421838.1"
                     /translation="MKIHAKAKKILVSLIAIMLFLSLIPGYAPMAEETSTGVAEPEKK
                     AGEQAPTEVKDERTENEVVFDNHDGSFTKQIFADPINMEVDGEMKRIDANVEKEADSD
                     MIVPKQTPLELGFLDKMEDGAYQKLTKAGAEVTFRLKGARTGENEQAVTDQPATYKEN
                     EVTYENVFPKTDLRHLTFPQSVKEDIVLHEPNQVDTYVYQIETKLGLELAKNGDVLFK
                     NKSGETMYTLPKPVMTDSNVGAETGEAALSENVSFEVKQLTKTVYELQLKVDTAWLND
                     AAREYPVYIDPSVRLDEVYNANINSAKPTETNIGSKLWDSGQNAYTLKLGKWDNSTGN
                     NAAYLKMDTSTLNKATISKATLKVYNIWHMSPTVKNDLWYYESNANWSPWQVTWNTAP
                     ATTRIGSVNVGRGEWANLDVTKTVQAWASGVRPNNGFRLATNIDQNYWKKLVASENNK
                     NYPYLEVNYTYAQPEKPTVKTNSNGVGTGTGYMDLSWKAVPGATSYNIVISNGYNYEY
                     INTKSTATTWSTKGKKIFPTNDEIANGEFEFHHDGKGTEFALDPRAQYENAFQAGSTF
                     GLRNLTRYLFRVQAVFPGGESPNSDLVFAYMPIEKPQPPAAKAYSNLAHKETGYVELN
                     WEKSPMADGYKVLVFNGKAYEEYDVGAETKWTTQNKGIWPTKEEIAEGKFALHHDGKG
                     DELAKDPSPVYTNSGGNYKERTNYWFRIVAYQKAGNNATSIQSEPATPSLPEVVNKQL
                     GMVDYWTSVPVRGGEVNATNGNFLFHETDFNLEGRGPSINVDRTFNSQDDATGIFGKG
                     WTSTLEEKLIEEENGNIVWVESDKKVHRFTKKGDKYEAPPGIYSEITKNADGYLKIEE
                     DKSETRFLADGRLKSEKDTKGNELTYEYTDGKLTNMRDASGRTVTLAYEGELVKELVG
                     PEDRKISYTYNDKQELISSSTARGKIYCYGYTDGLLTSIYDPKHTEEKPYETTFAYEE
                     EKLTEITDPVGKKTTLSYDMEEQQTTLTNEKKKKTIYSYNDAGNPKKEIVDADGLKLT
                     TTYTYESNNLVKEVNPKGQEETYSYDADGNITQATDAYGTESYTYNGNNDVTSATDTE
                     GRKTTVTYDGADAVSETLATESQVSSVTQYDAYGNPIRGSGELSSAGNLLQNSGFEKG
                     AGVSNWTLIQSDAKGSMTFDSTQSAPGTLGGSGSVKLTSEANSTVKGYSSVTQRVDVE
                     PETTYTFSAWIKTSGMTNADAILIGRLQDANAKDITDAGVWQSNRATSIKKNGGWVKR
                     QLTFKTSKNTRQVLLYLDNEQPAPHKGKGTIWYDNVQFEKGSVASSYNPVVNSSFEEH
                     NGTLPTGWARSGNTALTQAKVVDNEGYSGDSAVYFERKATSEAYTHIAQDVPVNQKEA
                     KALTISALSKSEDAKSNGSVATMSNDYSVWGTINYQDGTTSSVQGQFPLGTNDWNRSA
                     VVIKPTKPIKSVKVYTMFRNGLTGKAWFDDVRVIEGEVLTKNEYDASGNYVTASYDEE
                     GRKISFTYDIYGNKTSETDEKGNKKTLTYDADNALIDTKLANGTSVAYKYDDNGNTTE
                     KNVTASGKTQKNIYEYDVDNKITAFTDALNRTIKYEYDAAGNKTKAIMPNGRVTESTY
                     DSADRMDGIKWNDKLAFKFQYDPNGNQTKVTDEINSIVTDKTYDDANRITKVAERGGD
                     VSYTYKDKPTKDNKGKTDKVGEVAINHGDYTAKTSYTYNDLDRNTRVNDGSKNAYFEF
                     DEFGNINVYTAGNGTAANYTYDSTQKVTNAAISSASGTQILDENYTYDAASNRTSIDN
                     KQDGKTTYEYDAVNQLTKETLPDGTVKAYTYDGFGNRTQVAISGNETKTIAASYNDGN
                     QLVSWNGEALTYDANGNRTSDGKYTYTWDTGDRLSSITKKGESEPFTSYTYDDDDRRL
                     SKTVDGVTTNYHYDGDSIDVLYETDGDGKVVRQYVYSDDNVRLAMKMNGKTLYYHYNA
                     HGDVIALTDEAGKIVAEYAYDAWGNVLKNTASTEEAKANPYGYAGYTYDKEIEQYYLM
                     ARYYEPEQGVFTAYDPDPGDEDDPQTMNGYNYANNNPVMMVDPDGNFPLAIPAVYWGV
                     SGAIAAAPFVGYGIGAAGTKIWNNTKKVNRGYKFLWNNRKQIARKVYKSTRIKWGHIK
                     NRHSPKSSIKKKGKFRNNRTLKRTTRATLRSGKARPGEKGRTILEKTFKERVGVNRDG
                     DPSYRVRVIRAPNGKVITSYPI"
     gene            complement(8986..9411)
                     /locus_tag="U0342_000477"
     CDS             complement(8986..9411)
                     /locus_tag="U0342_000477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421839.1"
                     /translation="MGYIRVIFDSFIILEKYHTRVGFDGFALVANEAIFKVQQDTQYL
                     KPYQNLNRPQEQIPELSEEGDTLLNFLEWTKKNNKLVEIMTVWDELIIGTIETIEANL
                     VMINTLAPEEFASDGKCFIECDNIVDICIDTARLKFITA"
     gene            complement(9607..10353)
                     /locus_tag="U0342_000478"
     CDS             complement(9607..10353)
                     /locus_tag="U0342_000478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2421840.1"
                     /translation="MTIKNKVIIITGASSGIGEATALLLAEKGAKVVLAARRVEKLEK
                     IVQTIKASSGEAIFAKTDVTKREDNKKLVELAIETYGKVDAIFLNAGIMPNSPLSALK
                     EDEWEQMVDINIKGVLNGIAAVLPSFIAQKSGHIIATSSVAGLKAYPGGAVYGATKWA
                     VRDLMEVLRMESAQEGTNIRTATIYPAAINTELLETITDKETEQGMTSLYKQYGITPD
                     RIASIVAYAIDQPEDVNVNEFTVGPTSQPW"
     gene            complement(10367..10936)
                     /locus_tag="U0342_000479"
     CDS             complement(10367..10936)
                     /locus_tag="U0342_000479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar O-acetyltransferase"
                     /protein_id="HEM2421841.1"
                     /translation="MIEQDLQKRLVGQEILQGSDLLDEIHKVKQNNEQLIIELNTKYH
                     SKKEVIKYLSDITGKPVDPSVDVSLPFYSDFGKHITFGKNIFINLNVTFVDLGGITIE
                     DNVLIGPGARLVTVNHLVSPKKRRGLRVAPICVKKNAWIGANATILSGVTIGENAIVA
                     ADATVTRDVPANVIVAGSPAKQIRKIIEE"
     gene            11054..11929
                     /locus_tag="U0342_000480"
     CDS             11054..11929
                     /locus_tag="U0342_000480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2421842.1"
                     /translation="MELRVLNYFLTVAREKTISRAAEVLHLSQPTLSKQLKELEEELG
                     VTLFIRGNRSITLTEDGLYLANRGKEILSLVELTTSNLLQNETISGKIMIGAAETRGF
                     EFIGSVLHELREKHPDITFQLHSGNADDVLEKIEHGLLDFGLVINPVEKLQYEYLPLN
                     IEDTWGILVNTKHSLAKKAVVTPSDIEANPIVVSNQSFIDNQLASWLGEHFEQLNVIG
                     RYNLLYNASLLAKENIASILCIDGIINTENTNLKFIPFSPPLTAGISIVWKKNQTFSS
                     ASKEFLRLIQKTCSK"
     gene            complement(11952..14534)
                     /locus_tag="U0342_000481"
     CDS             complement(11952..14534)
                     /locus_tag="U0342_000481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HEM2421843.1"
                     /translation="MVKAHIVNHTHWDREWYFTSADALVLSEQLFTEVIDELKKHPEA
                     NFVLDGQLSILDDYVALYPEKLADIKQLIADKQLFIGPWFTQTDAFFAHGESILRNAM
                     IGIFDSKKYGDYMEIGYLPDTFGFNAQMPTLLEHAGFDNVIFWRGIHLGEHVASPYFK
                     WQGLGEEASIYAINMPQGYGTGMLLEPTSAYVDGRLDPAIDFIEKYSKTTEVLIPSGN
                     DQLNIISNFAEKLVEINKMGRHDYQLSTYQDFIQYVRELPDLEEYRGEFRSPVLARVH
                     KTIGSSRMNIKLKSASLEQKLLTRIEPLLVIAKASGISISERLLMHTWKKLLEGQAHD
                     SLAGCVSDPVAEDILHRMKEADELCDSIENTIVKKIADDLSLAANEIIVFNTDSHDFD
                     GCKEIQVVTEHKNIHFPAFPDATIVQEEFIPSRENVLEETPAGNRFIEEPGYYVLQVR
                     VKVELPGLGYRVIAFEENDRELDSMIASNDVAITNNFYKITFENGEIALEKPNGERIT
                     SFITLEDDVNAGDTYDYSPLAGDIAELFTFSEVKTEKSSEVERLILTGKSDFPLDRLT
                     KEGHGDLQIKLILEVKKGSELLDVKVEVDNQIKNHRLRLKVNTGVKTDYNIASLPFGY
                     IKRKPVVPANWRETYSEMPIDIEPLEQSVTLTNEAESCTIFTQGIKEYQQLDQYLALT
                     LLATTGQLGKPDLAYRPGRASGDTTKKGHVLIETEGAQLLGKHEFSLAIYLGDQAFDE
                     HKTAERTKAFNQANVSYQRQPFNHFLHRLDNKIQKTERKLGAKQTLGMLNLPKEYLVS
                     ACHPSYYSADKYIIRLENPTNTPQKLALSDMSFEYVNAIEEVVANDNNTIPAYGSVTL
                     RLEI"
     gene            complement(14550..15656)
                     /locus_tag="U0342_000482"
     CDS             complement(14550..15656)
                     /locus_tag="U0342_000482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HEM2421844.1"
                     /translation="MFRKIGSELKKHVLTGISYMIPLVIAGAVIMAIARVGGSFFGIT
                     DIWDAKYADSANSLISLLHSLDGFGGLALGMMFPVIAAFIGYSIADKLALAPGLVGGL
                     LARDIGAGFLGALAAGLIAGYTCLLIKKYVKLPKAAASIVPVFLVPVFGTLITVLIIN
                     YVVGIPFADLNTALENWLNGMSGSNQILMAAIIGAMVGFDLGGPVNKAAVTTAMALLT
                     SGIYAPNTAAQVAIIIPPLGLGLATLIAKRKYNTEMREAGKSSLIMGLVGISEGAIPF
                     AVESPLKVIPATVLGSAVGGALAVGLGAINQAPISGFYGWFTVENWPVYILAIAVGTL
                     IVAGMSVALRKASAGEEMAGSSYDDEIDEAEWEA"
     gene            complement(15669..15989)
                     /locus_tag="U0342_000483"
     CDS             complement(15669..15989)
                     /locus_tag="U0342_000483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HEM2421845.1"
                     /translation="MKRKIIAVTACATGVAHTYMAAQALKKGAKKMGNLIKVETQGAT
                     GIENELTEKDVNIGEVVIFAVDTKVRNKERFDGKVVLEVPVSAPIKDAEKVINAALAL
                     IDEK"
     gene            complement(15986..16450)
                     /locus_tag="U0342_000484"
     CDS             complement(15986..16450)
                     /locus_tag="U0342_000484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2421846.1"
                     /translation="MEVKDILTKELVVFDLEATTKEAAIEEMAEMLDEHGILADKATY
                     VRAVLDREAHSTTGIGNNIAIPHGKSESVTKSAIVFARTKEMIEWESLDDEPVNMIFL
                     LAITDSDKTDGHLKILAEIATKLMDDDIVENLKNTRDEEEVIRILNGGVVEI"
     gene            complement(16450..18411)
                     /locus_tag="U0342_000485"
     CDS             complement(16450..18411)
                     /locus_tag="U0342_000485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2421847.1"
                     /translation="MKAVTKMIANREKNIIQFLMKTGQTRVGTIANHLGLSEKTVSNS
                     LKEIDVFLKDFDMTVVRKPKIGVYIEGDNKAFAEVSRFLDNQVSPIPSTKEERVIYIF
                     SKLLKADDYITIHQLADELYISRSTIEKNMVEVTKMLEKEGITLYKKPSKGMKLLISE
                     REKRALTSKFINNFWGNNWYLKQEGEKVLQAFDTIKADVTGIFPEEGLKEIIAIVQAF
                     SERHDFAFTDYAFQSIVIHLAIAVERIRAGEYIENVESDPMKDVFDSQRNNTEILVSM
                     LEDRLDIKIPAFEVGYIQLHLTAAYNQQHDELLVSVRPKEDDVAEFVSTCLAEGNYDK
                     SLLDDLTTHMKSAINRLKLGMHFKNPYLSKIKQNFPQAFEEALYFKAKFEQKYDVQVN
                     EDETAYIALHFEAYKERSRSFPDQIRVVLVCSTGLGSSRLLAARIKKYFPMITIEKIL
                     SVQALMETEVDVDLVISTIYLELEDIPSIVVSPMMSKADLQQVESQIERTRRKKKKRS
                     QPFVDLIEPKTIFAKLDVATMEDAITQIGDKLVNLGIAQSGIVESALKREALSFTSFE
                     EMATPHADPALINESHIAIATLKNPVKWGLVEVDKIFFIALTEQNGINLDAMYEQFYK
                     YIDNKKWLEKLTQLKSAAEIYEHLLKDGM"
     gene            18573..19430
                     /locus_tag="U0342_000486"
     CDS             18573..19430
                     /locus_tag="U0342_000486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GRP family sugar transporter"
                     /protein_id="HEM2421848.1"
                     /translation="MSIYLIALLPVLGWGFMPIIANLRKSTPEEQLLGTSISALLFAF
                     ILFWILSPEITVLSFIVSFVSGIFWSFGQLLQFKGIAASSVAKAMPISNGTQLVGATL
                     FAVLVFREWQTVTAVIIGVVAVILILIGVVMTGFQKRGNHITESVSFHVYGIVILSSF
                     FLTLYVVTNQLFDVTGFSIILPQAIGMLTCAIGINLAKKTAISRKNVTFNLMTGLSWS
                     IANLGMFLATAVLGVATSFSISQACVIVATIGGILIFKQKKSPLEWTFILSGILLIMV
                     GVVFLSLLK"
     gene            complement(19449..20261)
                     /locus_tag="U0342_000487"
     CDS             complement(19449..20261)
                     /locus_tag="U0342_000487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2421849.1"
                     /translation="MIRAISVDMDGTFLDGNGEYDRARFEKIYVELMKRGIKFIVASG
                     NQYYQLKSFFPGKDEELFYVAENGAVIFHQGELRSVNRFEERLVQKILRTLIQEYQDL
                     QVILCGVKSAYLLKAADPDFKAFAKKYYFELQELDSFDVLPDDTFIKFALDVEVAKTG
                     QIVEDLNQTFAGEIRAVSSGHGSIDIIIPGVTKGSAIQQLLNEWQVAPDDLLAFGDAN
                     NDIEMLQLTSHSYAMQESSPEVLAAAKHVAPSNKEAGVLQVIEEYMKKSQRP"
     gene            20408..20962
                     /locus_tag="U0342_000488"
     CDS             20408..20962
                     /locus_tag="U0342_000488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1211 domain-containing protein"
                     /protein_id="HEM2421850.1"
                     /translation="MSKGRLEAFSDGVFAIIITIIVLGMTLPDVFTAASTQAFLWEIF
                     IFIEGGLIIGQFWYSHSRLFDQVTFISTSAVLFNILFLLVLSLIPLFTRAIMQHPDMT
                     APIIGFVMTILITSVIFQLLHHAVYGKDSGIDNWKFRISSFIFVIALGIISFFAPQIS
                     TILFIIFPIAGWIIQLTNRRQPPK"
     gene            21043..21342
                     /locus_tag="U0342_000489"
     CDS             21043..21342
                     /locus_tag="U0342_000489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage repressor protein"
                     /protein_id="HEM2421851.1"
                     /translation="MRSLDAVEILRRGETIERYKEGGNSMLPLIKSMQPVRLEPIGMR
                     ELKVNDIVFCKVRGSFFTHKISKIRGKQYQISNNHKHVNGWITRNSIYGIVTKIW"
     gene            complement(21395..21805)
                     /locus_tag="U0342_000490"
     CDS             complement(21395..21805)
                     /locus_tag="U0342_000490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2'-O-methyl transferase"
                     /protein_id="HEM2421852.1"
                     /translation="MKRYIINRGIMVAVVIIYMYPLLGIIKGEKIFGDIGTPIVMIIA
                     ALIGTLSSVFLSEEKTKREYEKEKLEKDERYINNRKTFSHYLLIVLALTIPIVLIVLN
                     LNGIEQISISSLTIIFLIFCFSYMIVLEIIRKKV"
     gene            complement(21807..22010)
                     /locus_tag="U0342_000491"
     CDS             complement(21807..22010)
                     /locus_tag="U0342_000491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2421853.1"
                     /translation="MKVRNKVKQLREERGIGQNELALALEVSRQTIHAIEKGKYNPSL
                     ELSLKMARYFRLTIEEIFQLEEN"
     gene            complement(22137..23537)
                     /gene="pdgA"
                     /locus_tag="U0342_000492"
     CDS             complement(22137..23537)
                     /gene="pdgA"
                     /locus_tag="U0342_000492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan N-acetylglucosamine deacetylase
                     PdgA"
                     /protein_id="HEM2421854.1"
                     /translation="MKIRWIRLSLVTVLIIAVVFVGVIGFQKYQFSKSRNKVIMQMDR
                     LMKDQDGGNFRRLDKKENGVEIISYIPKTTEKKDNEIIQKEIEKATDAEVKKLNRDKE
                     TQGIIFYTYQKHRMAEQAISYKAVQSEYVKEGRTKFVLKDKKDICKNIVTDAETGALL
                     TLGEVLIKSNQTKLNLKTAVEEELIKTGGFSLKDVGNLGEIKSLVKWNQTDFEITNSE
                     LILPVKIPGAPEPNKVKVKLADIASSVNKRYLPSSVKVPEVPKAKTNKRIALTFDDGP
                     SASVTPGVLDTLKRHNVKATFFVLGSSVIQNPGLVKRELEEGHQVGSHSWDHPQLTKQ
                     STQEVYNQILKTQKAVFDQTGYFPTTMRPPYGAVNKQVAEEIGLPIIQWSVDTEDWKN
                     KNAGIVTKKVLAGATDGAIVLMHDIHKTTAASLDATLTKLKNQGYEFVTIDELYGEKL
                     QIGKQYFDKTDSRMVK"
     gene            complement(23830..24639)
                     /locus_tag="U0342_000493"
     CDS             complement(23830..24639)
                     /locus_tag="U0342_000493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ZIP family metal transporter"
                     /protein_id="HEM2421855.1"
                     /translation="MLNYLSSLNPVLLALLAGIFTWACTAAGASLVFFFKNLNKKWGN
                     VMLGFAAGVMLAASFWSLLAPAIEMSKDLGKFSFVPALVGFLLGGIFLRVIDRIIPHL
                     HFGFPEQAKEGPKTSLRKSILLVLSITIHNIPEGAAVGVAFGAVITGDTETLITAIVL
                     ALGIGIQNFPEGAAVSIPLRGEGLSRGKSFWYGQLSAVVEPIFAVIGAVLVVFVTPIL
                     PFALAFAAGAMIFVIVEELIPESQVEGSTDLATAATMAGFAVMMVLDVALG"
     gene            complement(24666..24857)
                     /locus_tag="U0342_000494"
     CDS             complement(24666..24857)
                     /locus_tag="U0342_000494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421856.1"
                     /translation="MAKPIEEIGEEIGAKVEKVARKTGNVAGTAAKLSVYSSIWAVKT
                     GVNKTRAFAQGFKQGWSGK"
     gene            25200..26072
                     /locus_tag="U0342_000495"
     CDS             25200..26072
                     /locus_tag="U0342_000495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell envelope integrity protein TolA"
                     /protein_id="HEM2421857.1"
                     /translation="MTGLGTLLFLVGIGVLIFGLVSFRRKNWPRKKTQIIIISSILAI
                     IIGVGIIPTTDEEASTEEPTKQEEKTEKVDNTPILKAETTFTTDDEGTLVVEGKTNPG
                     AEVTLDFVAIPDAVTTADENGAFSLSVNQLDKAQDAVLSIVIDGQTKEQTLKLALTPA
                     YETKLTAKAEAERVAAEKAEAERVERERVAAEEKRAADAKIAAEKKAEEARVAAEKKA
                     AEEKRVAAERSKAAAAQPDTSNEQGQMVYITATGKRYHYDQNCRGLNNSNGETAVTVA
                     QAKAQGLTLCKFEQ"
     gene            26272..28875
                     /gene="ppsA"
                     /locus_tag="U0342_000496"
     CDS             26272..28875
                     /gene="ppsA"
                     /locus_tag="U0342_000496"
                     /EC_number="2.7.9.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate synthase"
                     /protein_id="HEM2421858.1"
                     /translation="MKPYVLKFQEIRPHSEALVGGKGMNLGACSYIEGVHVPAGFCLT
                     TEAYKRTLAENNEFTQLLQRLSSLKTSDMDAIREISETIRTLIQHTQIPSEIASYMDA
                     TLLDVGGYEMPFAVRSSATAEDLPHASFAGQHDTYLNIIGKDALLQHISMCWASLFTE
                     RAIIYRIQNQFDHRKVQLAVVIQQMISPEASGILFTADPITSNRKSLSIDASFGLGEA
                     LVSGLVSADSYTVRENTITNKIIATKKLAIYSLKEGGTETRILEKSQQTKQTLTDQQI
                     IQLAKLGRKIEAYFGKPQDIEWCLAEGAFYIVQSRPITTLYPIPEVNEPGNRVYISVA
                     HQQMMTDAMKPLGLSFYLMTTPATMYTAGGRLFVDITQSLSAKVSRDMMVNSLGQSDP
                     LIKDALLTVINKKGFLPPLPTEENPSQAPVSGKPPVRSIPDSSSVFELVRNSENSIKH
                     LKQSIETKNGSDLFDFIVEDLEELKRVLFNPTSIDAIMAGMDASAWLNEHIYQWLGEK
                     NVADKLSESAPNNITSQMGLELLDVADVIRPYPAVRAYLEQTKNPDFMNELATLEGGA
                     ETKKALEDYLQKYGMRCAGEIDLTKTRWIENPLTLIPLILSNIKNFDSSASMHKFAQG
                     EKEAFHKEQEILRRLQELPDGEQKAMETKEKIDILRHFIGYREYPKYGMINRYFIYKL
                     ALLRAGEQLVKDGILQEHEDIYFLYFEELREVVRTGQVDYELINARKRDFATFEKLTP
                     PRILTSDGEMINGEYKRENLPKDAILGLPVSSGTVEGRARVILEMEKADLEDGDILVT
                     AYTDPSWTPAFVSIKGLVTEVGGLMTHGAVIAREYGLPAVVGVENATTIIKDGQQIRI
                     NGTEGYIEILD"
     gene            complement(28923..>30640)
                     /locus_tag="U0342_000497"
     CDS             complement(28923..>30640)
                     /locus_tag="U0342_000497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2421859.1"
                     /translation="MTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISDINAVKD
                     LTKLKMLNVGSNQISDISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN
                     HITDIRPLASLSKMDSADFANQVIKKPARNFSKTLSVPNNITSIDGTLVTPKTISNNG
                     TYDAPNVNWSSPSYLPEVRYTFKQDVAVGSTTSSYTGIIIQPLNEPVDYNVTFNIDGN
                     TSEVKTVTEEDLIPEPTNPTKQGYTFDGWYDAETGGTKWDFTTGQMPANDLMLYAHFS
                     VNSYQVNFDIDGAVMNEAVVYDTLLNEPTAPTKQGYTFDGWYDAETGGNKWDFKTMKM
                     PANDVTLYAHFTVSSYQVNFDIDGAVTNEAIVYDALLNEPATPTKQGYTFDGWYDAET
                     GGNKWDFKTMKMPANDVTLYAHFTINNYQANFDIDGAVTNETITYDTLLNEPTAPTKQ
                     GFLFDGWYDAEVGGTKWDFNTMKMPANDINLYAHFSKETPLIPSPSDESDSKPTNGSI
                     TINEPSATSMPAQNNNITVTAGENTPELTTAKLPKTGDNNPWQTLFAGILLSSSAFYI
                     WRKKA"
BASE COUNT         8315 a         6444 c         5489 g        10392 t
ORIGIN      
        1 tctggattag ctaaagccaa ttcatggaga tatttatctc cttttatacg tacctcctca
       61 taattgtctc cttgcttcat aaaatattct ggattaagtg aaatacaata accaataatc
      121 cactttacct ctgtcacatc aagaagcttt ttttctccat attcatacat attcatcaat
      181 tgcttttcct gtgtttcata atcttcaata tcaaaatcat caattatcaa ataccatttt
      241 atgaaaaagg ttcttacaaa ataacgggta ttcctctggt ccaaattcca tgcattatag
      301 ctatagtcta atattttttc caaatcaccc tctacctcta agcaatctaa atcttcccat
      361 tgaagattta acatgattca ttttccccct cgttagtttt ctatttagtt ttaacccatg
      421 catcactaat tctaattttc ccttcaactc gtttaaacgt cactacaata gtccttttac
      481 catatttcat cgttttctgc ctagcacttc cataggctga ttccttacca ttccgcatcg
      541 ttcgatttat aagatttctc acctgccccc aactaccatc cgtaatcgaa ttccaatcat
      601 gtttttttct caatatatat ttcgattttt ttctgtaata gaatttacag catttgttga
      661 ttcttttaca gatttcttct tagctgcaga taatctaaat cccttccacc attttttcat
      721 gctctttgaa actttttttt gcgccttttt tcgcgtactt ccaagctgtt tttccgcctt
      781 ttgcggcaaa cctaaacaat actcctgccc atagtacatc tggatctgct aacatcactg
      841 gattattact cgcataatta tatccattca tcgtttgcgg atcgtcttca tcccctgggt
      901 ctgggtcaac agctgtaaat gcgacttgtt ctggttcgta ataccgcgcc atcaaataat
      961 attgtttaat ttccttgtca tacgtatatc ctttataacc atacgaattg gctttggctt
     1021 cttccgtgga ggcagtattt ttcagcacat ttccccaagc atcatacgca tattctgcga
     1081 caaccttgcc tgcttcctcc gtgagcgcga ttacgtcgtc atccgcattg taatgataat
     1141 tcgtcgtcac gccatcaatg attatttatt ttatagtatt taacgttcct gatttgattt
     1201 tcatttttaa aataagccct ccctataaaa acggagggct cattttcagg ttatttttaa
     1261 tgctaattct tctctatagg ccttcttcaa agtttagaaa gctggacaat gttgaattca
     1321 ttttcacttt ctaaaactac ttcactatat ccggtactta ttgcatatgc ctcatcatat
     1381 acttttttat ctataatgat ttctttcgta atttccatac tttcatctac tttataaata
     1441 tgattctgat atctagcgta aaagttatct cccacactca acaattcgtc cacagtataa
     1501 tttattacga ctttattctg aacttttttc gaggttaaat catagtctaa agtaaagtca
     1561 tcatcatttt cttcataaca cagtatccgt atccttttat tcttacagct cattgattgt
     1621 acatcaatga gtgtttctaa aatgctgtca tctaagagcc cagtaatttc tcctgtaaat
     1681 atatctattt taataagccc taattgtgct atgggtaaat tctcctcact cccaaacata
     1741 ccttcttctg aataaataac ataagcttca tcatttaaaa cgaggaaatc cgccacacct
     1801 tctcccaatg gatatttaaa atgcttccct atacatgaga ttaataaata atcgtaaaca
     1861 ccatcatgac aaaaaataca aactttctca tcagacaatt tgacttcctt aactttgaaa
     1921 taccgatcag aaattatttc atcgtttatt tcacatgaaa tttcttcccc agaaaaaagt
     1981 ttcaaacagt ttttttctat ttggaaatta agtacttctc ctccagtttc tttaaaagcg
     2041 taaatagatt gtgcttgttt ttttattttt aacatagtgt ttacctcctg cttaaatggg
     2101 atatgatgta attactttac catttggagc tctgataact cttactctat agctcgggtc
     2161 cccgtcacga ttcacgccta ccctttcttt gaatgttttc tctaaaattg tccggccttt
     2221 ctctcctggt ctagctttcc cacttcttaa tgtagctctt gttgttcttt ttagagtcct
     2281 attatttctg aatttcccct tttttttaat cgatgactta ggagagtgcc tattcttaat
     2341 atgtccccac ttaattctag ttgacttata cacctttcta gcaatctgtt tacgattatt
     2401 ccaaaggaac ttatatcccc tattcacttt tttagtgtta ttccatatct ttgttcctgc
     2461 tgcacctata ccataaccaa caaatggcgc agctgcaata gctccactaa ctccccaata
     2521 aacagctgga atggctaatg gaaagttccc atccgggtca accatcatca ccggattatt
     2581 attcgcataa ttatacccgt tcatcgtctg cgggtcgtct tcatcacctg ggtctgggtc
     2641 gtaagcagta aacacacctt gctctggttc gtaataacgc gccatcaagt aatattgttc
     2701 gatttccttg tcatacgtgt atcctgcata accataagga ttcgctttgg cttcttctgt
     2761 agaggcagtg tttttcagca catttcccca agcatcatac gcatattctg cgacaatctt
     2821 acctgcttca tccgtgagtg caatcacgtc gccatgcgca ttatagtgat aatagagggt
     2881 tttaccattc atcttcatcg ctaaacgaac attatcatcc gaataaacat actgacgaac
     2941 tacttttcca tccccatcag tttcatacag aacatcaata ctatcgccgt cataatgata
     3001 attcgtcgtc acaccatcga ccgtttttga tagacgacga tcgtcatcat cgtacgtata
     3061 actcgtaaac ggctcgctct cacctttttt tgtgatgctg cttaaacggt cgccggtatc
     3121 ccatgtatac gtgtacttgc catcgcttgt acggttacca ttcgcgtcat acgtcagagc
     3181 ctctccgttc cacgaaacca gttgattacc atcattataa cttgcggcaa ttgtttttgt
     3241 ctcgtttccg ctgattgcta cttgtgtgcg gtttccgaag ccatcgtagg tgtatgcttt
     3301 tacggtgcca tctggtagtg tttctttagt tagttggttg actgcatcat attcgtaggt
     3361 tgtttttccg tcttgtttgt tgtcgatgct tgtgcgattg cttgctgcgt cataggtgta
     3421 gttttcgtct aaaatttggg tgccgcttgc gctactaata gctgcgttgg tgactttttg
     3481 ggtgctatcg taggtgtagt tggctgcggt gccgtttcct gctgtgtaga cgttgatgtt
     3541 tccaaattcg tcaaactcga aataggcgtt tttgcttcca tcgtttacgc gggtattgcg
     3601 gtctaagtcg ttgtatgtgt agcttgtttt tgctgtgtag tcgccgtggt taatggctac
     3661 ttcgccgact ttgtctgttt ttcctttgtt atcttttgtt ggtttgtctt tgtatgtgta
     3721 gcttacgtcg ccacctcgtt cggctacttt ggtgattcgg ttggcatcgt cgtaggtttt
     3781 gtcggttacg atgctgttga tttcgtcggt tacttttgtt tggttgccgt ttggatcgta
     3841 ttggaattta aaggctagtt tatcattcca tttaatcccg tccatgcggt cagcggaatc
     3901 gtatgtgctt tcggttacgc gaccatttgg catgattgct tttgttttat taccggctgc
     3961 atcgtattca tacttgattg tgcgatttag tgcatcggta aatgcggtga ttttgttatc
     4021 cacgtcatat tcatagatat ttttttgcgt tttgccggat gcagtgacat ttttttcggt
     4081 ggtgttgcca ttgtcgtcgt acttataggc tacggatgtg ccgttcgcta gttttgtgtc
     4141 tataagcgcg ttgtctgcat cataggttaa agtttttttg ttgccttttt cgtctgtttc
     4201 ggatgtttta ttgccgtaaa tatcgtaagt gaagctgatt ttgcggcctt cttcgtcata
     4261 gctggctgtt acatagttgc cggaagcgtc gtattcattt tttgttaata cttcgccttc
     4321 tatgacacgt acgtcgtcaa accatgcttt tcctgttaaa ccattgcgga acatggtgta
     4381 aactttaact gatttgattg gtttggttgg tttaattact actgcgcttc ggttccagtc
     4441 gttggttcct agcgggaatt gtccttgtac ggaagaagtt gtgccatctt gatagttgat
     4501 tgttccccag acagaataat cgttcgacat cgttgcaact gagccgtttg atttggcatc
     4561 ttctgatttg gatagtgcgg aaatcgttaa tgctttggct tctttttgat ttactggcac
     4621 atcttgggca atgtgtgtat aggcttcact tgttgctttt cgttcaaaat aaacggcact
     4681 atcaccactg taaccttcat tatctactac ttttgcttgt gtaagtgcgg tatttcctga
     4741 acgtgcccag ccagtcggaa gcgttccatt gtgctcttca aaactgctgt tgactaccgg
     4801 gttgtaactg gaagcaacac tacctttttc aaattgaaca ttgtcgtacc aaattgttcc
     4861 ttttccttta tgcggagctg gttgttcgtt gtccaaataa agcaagactt ggcgcgtgtt
     4921 tttagatgtt ttaaaggtta attgacgttt tacccagccg ccgttctttt tgatggatgt
     4981 cgcacggttg gattgccata cgccagcatc ggtaatatct tttgcattcg catcttgtaa
     5041 acgtccaatg agaattgcat cggcgtttgt cattccggat gttttaatcc aggcgctaaa
     5101 tgtatacgtt gtttctggtt ctacatcaac gcgttgagta acggatgaat agccttttac
     5161 ggtagaattt gcttcactcg ttagtttaac ggaaccgctg ccgccgagtg ttcctggagc
     5221 tgactgagtg ctatcgaatg tcatgcttcc ttttgcatca gattgaatca gtgtccagtt
     5281 ggaaactcct gctccttttt caaagccgct gttttgaagt aagttacctg ctgaagaaag
     5341 ttcaccacta cctcgaattg gatttccata ggcgtcatac tgcgttacag aggatacttg
     5401 ggattctgtc gcaagtgttt ctgacaccgc atctgctccg tcataagtaa ccgtcgtttt
     5461 gcgtccttct gtgtcagttg cgctcgttac atcgttattt ccattgtagg tatatgattc
     5521 tgtaccgtaa gcatctgtcg cttgcgtgat attaccatct gcatcgtaag aatatgtttc
     5581 ttcttgtccc ttaggattca cttcttttac taggttattt gattcatacg tgtaggtcgt
     5641 tgtgagtttg agaccatctg catccacaat ttctttcttt ggatttccag catcattgta
     5701 ggaataaatg gttttcttct ttttctcgtt tgttaaagtt gtttgttgct cttccatgtc
     5761 ataagaaagt gttgtttttt tgccgaccgg atcggttatt tctgttaatt tctcttcttc
     5821 ataagcaaag gttgtttcgt atggtttttc ttctgtatgt tttggatcgt aaatcgatgt
     5881 taataagcca tctgtgtagc catagcagta tattttaccg cgggcagtgg atgaactgat
     5941 tagctcttgt ttgtcattat acgtgtagct gattttacgg tcttctggtc cgacaagttc
     6001 ttttacgagc tcgccttcat acgctaaagt cacggtacgt ccggaagcgt cgcgcatgtt
     6061 tgttagtttg ccgtcagtat attcgtaagt taattcgttg ccttttgtat ctttttcgga
     6121 ttttaatcgt ccatcagcta aaaagcgcgt ttctgactta tcttcttcta ttttcaaata
     6181 gccatctgcg tttttagtaa tctcggagta aatgcctggt ggagcctcgt atttatcacc
     6241 ttttttagtg aaacgatgga ctttcttgtc cgattccacc catacgatat ttccgttttc
     6301 ttcttcaata agtttctctt caagcgtact tgtccagcct ttaccaaaaa tgcctgttgc
     6361 gtcatcttga ctgttaaaag tacggtcgac attgatgctc gggccgcggc cttctaagtt
     6421 aaaatctgtt tcatggaata aaaagtttcc atttgtagcg tttacttcgc cgccacgtac
     6481 cggcacactt gtccagtaat ctaccattcc tagctgttta tttactactt ctggaaggga
     6541 tggtgtcgct ggttcggatt gaatacttgt ggcattattt cccgcttttt ggtacgcaac
     6601 aattcggaac cagtagtttg ttcgttcttt ataattaccg ccagaattgg tataaactgg
     6661 agaaggatct tttgctagtt catcgccttt tccgtcatga tgaagagcga atttaccttc
     6721 tgcaatttct tctttggttg gccaaatccc tttattttgg gtggtccact ttgtttctgc
     6781 gccaacatcg tattcttcgt aggctttccc attgaagaca agtactttat agccatccgc
     6841 cattgggctc ttttcccagt taagttccac gtatcctgtt tctttatgag ctaagttaga
     6901 atatgctttc gcagcagggg gttgtggttt ttcgattggc atataggcaa atactaagtc
     6961 ggaattcgga ctttctccac ccgggaaaac ggcttgcact ctgaataaat agcgcgttaa
     7021 attgcgcagt ccaaaagtac ttccagcttg aaacgcattt tcatattgcg ctcgcggatc
     7081 aagagcgaat tcggttcctt tgccatcatg gtggaattcg aattctccat tagcgatttc
     7141 gtcatttgtt gggaaaattt tcttcccttt agtgctccaa gtggttgcgg tgctttttgt
     7201 attaatatat tcgtagttat atccattaga aataacgata ttataactcg ttgcaccagg
     7261 aacagccttc caagataaat ccatgtaacc tgttccagtt cctactccat tcgaattcgt
     7321 tttaacagta ggtttttccg gttgagcata cgtataattt acttctagat aaggatagtt
     7381 tttattattt tcacttgcta ctaatttttt ccaatagttt tgatcgatgt tcgtagctag
     7441 acggaaaccg ttatttggtc gcacgccact tgcccatgct tgaactgttt tagtgacatc
     7501 taaattcgcc cactcacctc ggccgacatt gacgcttcca atccgtgtcg ttgcaggagc
     7561 tgtattccat gtcacttgcc atggggacca gttcgcatta gattcatagt accaaagatc
     7621 atttttaact gttggggaca tatgccaaat gttatacact tttagcgttg ctttagaaat
     7681 cgtcgcttta tttaaagtag acgtgtccat ttttaaatag gcggcattat ttcctgttga
     7741 attgtcccat ttaccaagtt ttaacgtgta agcattttgg ccagaatccc aaagcttgct
     7801 cccgatattg gtttctgttg gtttagctga attgatgttg gcattataca cttcatctaa
     7861 ccggacagat ggatcaatat agacaggata ttcgcgcgcg gcatcattta gccatgctgt
     7921 atctactttt aattgtagct catagactgt tttggttagt tgcttcactt caaaggaaac
     7981 attctcggat aacgctgctt ccccggtctc agcgccgaca ttggaatctg tcataactgg
     8041 tttcggaagc gtatacattg tttcgccaga tttatttttg aatagcacat cgccattctt
     8101 tgccagctct aaacctagtt ttgtttctat ttgataaaca tacgtatcta cttgattagg
     8161 ttcatgtagc acgatgtctt cttttactga ttgtggaaaa gttaaatgac gtaaatctgt
     8221 tttaggaaat acattttcat aagtaacttc attttctttg taggtcgctg gttggtctgt
     8281 gactgcttgt tcattttcgc ctgtacgtgc tccttttaag cgaaaagtaa cttctgcgcc
     8341 agcttttgtt agtttctggt atgcgccgtc ttccattttg tctaagaagc ctagttctaa
     8401 tggggtttgt tttggaacaa tcatgtcaga atctgcttct ttctccacat tcgcatcgat
     8461 gcgtttcatc tcgccatcaa cttccatatt gataggatcc gcaaagattt gttttgtaaa
     8521 gctcccgtcg tgattatcaa aaaccacttc attttctgtt cgttcgtctt tcacttctgt
     8581 tggtgcttgt tctcccgctt tcttttctgg ttctgctacc ccagttgacg tctcctccgc
     8641 cattggtgca taaccaggta ttagtgaaag aaatagcata atagctatta ggctcactaa
     8701 gatttttttt gcttttgcat gtattttcat gtgtcaagct ctcccttttt caatgtaatt
     8761 tcattcgatg ccttgctaat ttctcttttt ttaacttgcc gctaacaact tcactgccct
     8821 ctctttctaa aaaaggacca gttttaattg agataaaact ggtccttttc ctaatattac
     8881 aaaattatta tagcatgttt tcattccaaa aagttatgca aaatgtaaaa tttttacttt
     8941 ttgtttgaat tattaatttt attaattata attagtgtta aatagttaag cagtaataaa
     9001 tttcagtcgc gctgtatcaa tacaaatatc aacaatattg tcgcattcta taaagcattt
     9061 cccatcagat gcaaattctt ctggtgcaag ggtattaatc attactaaat ttgcttcaat
     9121 cgtttctatt gtcccgataa ttagctcatc ccaaacagtc attatttcca ctaatttgtt
     9181 gttctttttc gtccattcca gaaaattcaa tagtgtgtcg ccttcctcac ttaattcagg
     9241 tatttgttcc tgaggtcggt ttaaattttg atacggcttc agatattgag tatcttgttg
     9301 aactttaaaa atagcttcat ttgctacgag tgcaaaacca tcaaatccca ctctagtatg
     9361 gtatttttcc aatataatga acgaatcaaa aataactctg atatatccca cacgaaaatc
     9421 atttgtttgt tgctcatcat catatacttc ataaaggcac ttttggttta gttgttctaa
     9481 ttgtttacga tttcattggt tcacctcttt tttaagcgct ttcaatttaa gataccatgt
     9541 ttaatcctct cctgcaatac aaaaaaagcc ttgaacgaat aatcaatccg ttcaaggctt
     9601 ttccatttac cacggttggc tggttggacc tactgtgaat tcatttacgt tgacgtcttc
     9661 gggttgatcg atagcatacg caacaatgct cgcgatacga tcaggtgtga tgccgtattg
     9721 tttgtataag ctcgtcattc cttgttcggt ttctttatcc gtgattgttt ctagtaattc
     9781 cgtattgata gctgctggat aaatggtcgc tgtgcggata ttggttcctt cttgcgctga
     9841 ctccatccgt aatacttcca ttaagtcacg gactgcccat ttagtcgcgc catatactgc
     9901 gccgccggga tatgctttta atcctgctac agaagaagtg gcgatgatat gtcctgattt
     9961 ttgagcgatg aaagaaggca aaactgcggc aattccattc agtacgcctt taatattgat
    10021 atcaaccatt tgctcccatt cgtcttcttt taaagcagat aatggcgaat tcggcatgat
    10081 tcccgcattt aaaaagattg catctacttt tccgtatgtt tcaatcgcta attctactaa
    10141 tttcttattg tcttcgcgtt ttgtcacatc cgttttggca aaaattgctt cgcctgaact
    10201 cgctttaatc gtttgaacaa ttttttccag cttttctacg cgacgagcag caagaaccac
    10261 tttcgcccct ttttcagcta aaagtaaggc tgttgcttca ccaattccgg atgatgctcc
    10321 ggttataata attactttat ttttgattgt catttgctat ctctccttat tcctcgataa
    10381 ttttacgaat ttgtttggct gggcttccgg cgacgataac gtttgctggg acatctcttg
    10441 tgacggtagc atccgcagca acgatagcat tttcgccgat tgttacgcct gataatatcg
    10501 ttgcgtttgc gccaatccag gcgtttttct tcacacaaat tggggctact cttaagccac
    10561 gtcttttttt cgggctaact aaatggttga cggtcacaag tcttgctcct gggccaatta
    10621 aaacattatc ttcaattgta atcccaccca aatccacgaa agttacattt aaattgataa
    10681 agatattttt cccaaaagta atatgtttcc cgaagtcgct ataaaaagga agtgagacat
    10741 cgactgatgg atcgactggt tttccagtga tgtcactgag atatttaatc acttcttttt
    10801 ttgagtggta cttggtgttt agttcgatga taagttgttc attgttttgc tttactttgt
    10861 gaatttcatc taacaaatcc gacccttgga gaatttcttg gccgactagt cttttctgta
    10921 aatcttgttc tatcatgcgc tttccccctc gaaaatcttt tactatttaa ttatagcggg
    10981 agaagttata attgaataat acttataaaa catatccaac tattcatttt agttatagga
    11041 aagggtgatt ttaatggagc ttcgtgtgtt gaattatttt ttaactgttg ctcgtgaaaa
    11101 aacgattagt agagctgcgg aagtgcttca tctttctcag ccaacgcttt ctaaacaatt
    11161 gaaggaactt gaggaagaac taggggtaac tttatttatt cgtggaaatc ggtccattac
    11221 gttaacagag gatgggcttt atttagctaa tcgcgggaaa gaaattttat ctttagtgga
    11281 gttaactact tcgaatttac ttcaaaatga gacgattagc ggaaaaataa tgattggtgc
    11341 tgctgaaacg agaggatttg aatttatcgg tagcgtgtta catgaactta gagagaagca
    11401 tcccgacatt acttttcaat tgcatagcgg caatgcggat gatgttttag aaaaaattga
    11461 gcacggttta ctagattttg gtttggtaat taatcctgtg gaaaaactac aatatgaata
    11521 tttaccactt aatatagaag atacttgggg aattttagtc aatacaaaac attctttagc
    11581 gaaaaaagcg gttgtaactc ctagtgatat tgaagctaat ccgattgtcg tttccaacca
    11641 atctttcatt gataatcagc tagctagttg gcttggagag cattttgaac aattgaatgt
    11701 aattggtaga tataatttac tgtataatgc ctctttgctc gctaaggaga acatcgcaag
    11761 tattctttgt attgatggta ttatcaatac ggaaaatact aacctgaagt ttatcccttt
    11821 ttcgccgcct ctaactgctg gaattagtat tgtgtggaag aagaatcaaa ctttctccag
    11881 tgcttcgaag gaatttttac gattaataca aaaaacttgc tcaaaataaa tactttgagc
    11941 aagttttctt tctatatttc taatcgtaac gtaacagagc catatgctgg aatcgtgttg
    12001 ttgtcatttg caacaacttc ttcgatagca ttcacatact caaacgacat atccgagagt
    12061 gccaactttt gtggtgtgtt agttgggttt tccaggcgga taatgtattt atctgctgag
    12121 tagtaggacg ggtggcacgc tgaaactaag tattctttcg gcaaattcaa catacctaac
    12181 gtttgcttcg cgcctaattt ccgttctgtt ttctggattt tgttatccaa gcgatgtaaa
    12241 aagtggttga atggttgacg ctggtaagac acgtttgctt ggttgaacgc ttttgttcgt
    12301 tcagcggttt tatgttcgtc gaaagcttgg tcgccaagat agatggctaa tgaaaattca
    12361 tgtttaccaa gtaactgcgc gccttctgtt tctatgagca cgtgaccttt tttcgttgtg
    12421 tcgcctgatg ctcggcctgg ccggtatgct aaatcaggtt ttccgagttg tccggttgtt
    12481 gccagtagcg tcagtgctaa atattgatcc aattgttggt attctttgat gccctgtgtg
    12541 aaaatggtac aactttctgc ttcatttgtt agcgtcacgc tttgttcaag tggttcgatg
    12601 tcgattggca tttcgctata tgtttctcgc caattcgctg gtacaactgg ttttctcttg
    12661 atatatccga atggaagtga agcgatgttg tagtctgttt tcacacctgt gtttactttt
    12721 aagcgtagac ggtgattttt aatttggtta tctacttcaa ctttaacatc cagcagttcg
    12781 ctaccttttt tcacctctaa aatgagtttg atttgcaggt cgccatgccc ttctttcgtc
    12841 aaacgatcaa gtgggaaatc gctttttcct gttaaaatta aacgttcgac ttcgcttgat
    12901 ttctccgttt tcacttcgga aaaagtgaat aattccgcga tatctccggc tagtggtgaa
    12961 taatcatacg tatctcccgc attcacatca tcttctagtg taataaaaga agtgatgcgc
    13021 tcgccgtttg gtttttcaag agcaatttcg ccattttcaa aagtgatttt gtagaaatta
    13081 ttcgtgattg ccacatcatt ggaagcaatc atcgaatcca gttcgcggtc attctcttca
    13141 aaagcaatca cgcggtaacc aaggcctgga agctccactt tgacgcgcac ttgaagcaca
    13201 tagtagcccg gttcttcaat aaatcggttt ccagctggcg tttcttctag cacattttcg
    13261 cgcgatggaa tgaactcttc ttggacaatc gttgcgtccg gaaacgctgg gaaatggatg
    13321 tttttatgct cggttactac ttgtatttcc ttacatccgt caaaatcatg tgaatccgtg
    13381 ttaaaaacga taatttcgtt cgccgcaagt gacaaatcat cggcaatttt cttcacaatc
    13441 gtgttttcga tactatcgca tagttcgtcg gcttctttca tccggtgcaa aatatcttcg
    13501 gcaactggat cagaaacgca gcccgccaag ctatcatgcg cttgaccttc taaaagtttc
    13561 ttccacgtat gcattagtaa acgctcgcta atagaaattc cagatgcttt agcaataaca
    13621 agaagtggct caatacgtgt tagcaatttt tgctcgagtg acgcgctttt tagcttaata
    13681 ttcattcggc tagatccaat ggttttatgc actcgcgcaa gaaccggact tctaaattcg
    13741 ccgcgatatt cttctaagtc aggcagctct ctaacatatt gaataaaatc ttgataggta
    13801 ctaagttgat aatcatggcg tcccatcttg ttgatttcca ctaatttttc ggcaaagtta
    13861 ctaataatat tcagctgatc attcccagat ggaattaaaa cttcagttgt tttactgtac
    13921 ttttcaatga aatcaattgc cgggtcgagg cgtccatcca catatgccga ggttggttca
    13981 aggagcatcc ctgtgccgta accttgtggc atattaatcg cataaatcga cgcttcttct
    14041 ccaagtcctt gccatttaaa atatggagac gcaacatgtt caccaagatg aatcccacgc
    14101 cagaaaatca cattatcaaa gccagcatgt tcaagtaaag tcggcatttg ggcattaaaa
    14161 ccaaatgtat ctggcaaata accaatttcc atatagtcgc cgtatttttt actatcaaaa
    14221 atcccaatca tcgcattgcg caaaatcgac tcaccatgcg cgaaaaaggc atctgtttgc
    14281 gtaaaccacg gtccaatgaa aagttgttta tccgcaatta attgcttaat atccgctaat
    14341 ttttccgggt acagtgcgac ataatcatct aaaatcgaca gttgcccatc aagtacaaag
    14401 tttgcttctg ggtgcttttt taattcgtca attacttctg taaaaagttg ttcacttaga
    14461 accagtgcat cggccgaggt aaaataccac tctcggtccc aatgcgtatg gttcacaata
    14521 tgtgctttaa ccatagttac ctccgttttt taagcttccc attctgcttc gtcaatttcg
    14581 tcatcgtagc ttgaaccagc catttcctcg ccagcacttg ctttacgtaa agcgactgac
    14641 atacccgcaa cgattagcgt tccaacggca atcgctaaaa tataaactgg ccaattttct
    14701 actgtgaacc agccataaaa accactgatt ggcgcttggt taattgcgcc aagacctaca
    14761 gctagtgccc cgccgacagc agaaccaaga accgtagccg gaataacttt aagcggagat
    14821 tctaccgcga aaggaattgc cccttcacta atcccaacaa gtcccatgat aagagaagat
    14881 tttcctgcct cacgcatttc agtattatat ttacgttttg cgattaaggt tgctaaacca
    14941 agaccaagtg gtgggatgat gattgctact tgtgctgctg tatttggtgc ataaattcca
    15001 cttgttaaaa gtgccatcgc cgttgttaca gctgctttat ttacaggtcc gcctaagtca
    15061 aaaccaacca ttgctccgat aatagccgcc attagaattt gattcgatcc agacatacca
    15121 tttagccaat tttcaagggc tgtatttaag tcagcaaaag gaataccaac cacataatta
    15181 ataataagaa cggtaataag tgtgccaaaa actggtacta aaaataccgg tacaatcgaa
    15241 gccgccgctt ttggcagttt cacgtatttt ttaatcaata gacatgtgta accagcgatt
    15301 aaaccagctg ccagtgcccc gaggaaacca gcgccaatat cacgtgccag taaaccacca
    15361 acaagaccag gtgctagtgc taatttgtcc gcaatcgaat acccgataaa tgctgcaata
    15421 accgggaaca tcattcctag cgccaagcca ccaaaaccat ctaaactatg cagtagtgaa
    15481 attaaactat tcgcactgtc tgcgtatttc gcatcccaaa tatctgtaat tccgaaaaac
    15541 gaaccaccaa cccgagcaat cgccataatc acggcgcctg caataacgag cggaatcata
    15601 tatgaaatac ctgttaaaac gtgttttttc agttcactcc caatttttct gaacatggta
    15661 gatcctcctt atttttcgtc aattaacgca agtgctgcgt tgattacttt ttctgcatct
    15721 ttaatcggtg cgcttactgg aacttccagc acgactttac catcaaaacg ttctttgtta
    15781 cgaacttttg tatctactgc gaaaataact acttcgccga tatttacatc tttttcggtt
    15841 aattcattct caattcctgt cgcgccttgt gtttctactt tgataagatt gcccattttt
    15901 ttcgcgcctt ttttaagtgc ttgtgctgcc atatatgtgt gcgccactcc tgtcgcacat
    15961 gcggttactg cgataatttt acgtttcata tctctactac gcctccattt aaaattcgaa
    16021 taacttcttc ttcgtctctt gtatttttta aattttcgac aatatcatcg tccattagtt
    16081 tcgttgcaat ttctgcaagg atttttaagt gaccgtctgt tttgtcagaa tcagtaatcg
    16141 ccagtaagaa aatcatattt accggttcgt catccagtga ttcccactca atcatttctt
    16201 tcgttcttgc aaaaacgatg gccgattttg tgacactttc actttttccg tgtgggatag
    16261 caatgttatt tcctattcca gttgttgaat gtgcttcgcg atccaaaact gcccgaacat
    16321 aagtcgcttt atccgctaaa ataccatgtt catctagcat ttctgccatt tcttcaattg
    16381 ctgcttcttt tgtcgtcgcc tctaaatcaa agacgactaa ttcttttgtt aaaatatctt
    16441 ttacttccat tacatcccat cctttaacaa atgctcataa atttctgcgg cactttttag
    16501 ttgtgtcagc ttctcaagcc attttttatt atcaatatat ttataaaact gttcatacat
    16561 cgcgtctaaa ttaatgccat tttgttcggt cagagcgata aaaaagattt tatccacctc
    16621 gactaagccc catttcactg gatttttaag tgtggcaata gcgatgtgcg attcattaat
    16681 aagtgcagga tctgcgtgtg gtgtcgccat ttcttcaaaa gaagtgaacg ataacgcttc
    16741 tctttttagc gcactttcaa caatccctga ttgagcaata ccaagattca caagcttatc
    16801 accaatttgc gtgattgcgt cttccatcgt tgcaacatct agcttcgcaa aaatagtttt
    16861 cggttcaatc aagtcaacaa atggttggct gcgtttcttt ttcttgcgtc tcgttcgttc
    16921 gatttggctt tcaacttgtt gtaaatcggc tttactcatc atcggactga caacaatact
    16981 tggaatatct tccagttcga gataaatcgt gctgatgact aaatccacat cgacttctgt
    17041 ttccattaac gcctgaacgg ataatatttt ttcaatcgta atcattggaa aatatttttt
    17101 aattctcgcc gcaagtaatc ttgatgaacc aagcccggta ctgcatacaa gtacaactcg
    17161 aatttggtcg gggaaagaac gacttctttc tttgtatgcc tcaaaatgta gcgcgatata
    17221 cgccgtctca tcttcgttca cttgcacatc gtacttttgt tcaaattttg ctttaaaata
    17281 tagcgcttct tcaaacgctt ggggaaagtt ttgcttaatt ttgctaaggt acggattttt
    17341 aaaatgcata ccaagtttta accggttaat ggcggatttc atgtgtgtcg tcaagtcatc
    17401 cagtaagctt ttatcgtaat tcccttccgc taaacacgtg ctgacaaatt ctgccacatc
    17461 gtcttctttt ggtcgaacgc ttacaagtaa ctcatcatgc tgttggttat atgctgctgt
    17521 taaatgcaac tgaatatagc cgacttcaaa tgctggaatt ttaatatcca aacggtcttc
    17581 tagcatgcta acgaggattt ccgtattgtt tcgctgcgaa tcaaatacat ctttcattgg
    17641 atcgctctca acattttcga tatactctcc tgctcgaata cgctctaccg caatcgcaag
    17701 gtgaatgaca atcgattgaa acgcataatc agtaaaagca aaatcatgtc gctcactaaa
    17761 tgcttgaaca atcgcaatga tttctttcaa gccctcttct ggaaaaattc cggtgacatc
    17821 ggctttaatc gtgtcaaaag cttggaggac cttttcgcct tcttgcttta aataccaatt
    17881 attgccccaa aaattattaa taaatttcga tgttaaggcg cgcttttctc gttcactaat
    17941 aaggagtttc atgcccttac taggtttctt atacaaagta ataccttctt tttccagcat
    18001 tttcgtaact tcaaccatat ttttctcaat cgtgctccgg ctaatgtaaa gttcgtctgc
    18061 aagctgatga atcgtgatat agtcgtctgc tttaagcaat ttactgaaaa tgtagataac
    18121 ccgctcttct ttcgttgatg ggattgggct gacttggtta tctagaaatc ggctaacttc
    18181 ggcaaaagcc ttgttatcac cctcaatata cacaccgatt tttggtttac ggaccactgt
    18241 catatcaaaa tcctttagaa aaacatcgat ttccttcagt gaatttgaaa cagttttttc
    18301 tgaaagtccg agatgattcg cgatagttcc aacacgtgtt tgacctgtct tcattagaaa
    18361 ctgaatgata tttttttcgc gatttgcaat cattttcgtt accgctttca tttttaattt
    18421 tcctttccct acgcttattc tattacaaag actcatcccc agaaaactac gaaaattacc
    18481 gcattgaata ccgtaatttt gggatattgc tgttcatttt ggagaatggt agatttaaat
    18541 agcaccacta acctagaaag gaagcttatt ttatgtctat ttatcttatt gcgttactcc
    18601 ctgttcttgg gtggggattt atgccgataa ttgcgaactt acgaaaaagc acccccgagg
    18661 aacaactact ggggacttcg attagcgcgc tattatttgc tttcattttg ttctggattt
    18721 tatcaccaga aataacggtt ctttctttta tagtgagttt tgtttcgggt atcttttgga
    18781 gttttgggca attactacag tttaaaggga ttgcggcttc tagtgtcgcg aaggcaatgc
    18841 cgatttcaaa cggtacacaa ctcgttggcg caacgctttt tgccgttctt gttttccggg
    18901 aatggcaaac ggttacggct gttattatcg gagttgttgc agtaatttta atcttgattg
    18961 gggtggtaat gaccgggttt caaaaacgcg ggaatcatat cacggagtcg gtttcatttc
    19021 atgtctacgg tatcgttatt ctatcttcgt tctttttaac gctttacgta gtgacaaacc
    19081 agctttttga tgtcactggc ttttctatca ttttaccaca agcaatcggt atgctgacat
    19141 gcgccattgg tattaactta gcgaaaaaga ctgctatttc ccgaaaaaat gttacattca
    19201 acttaatgac cggattatcg tggtccatcg ccaatttagg catgttctta gcgactgctg
    19261 tacttggtgt cgcaacgagc ttctcgattt cacaagcttg cgttatcgtc gcaacaatcg
    19321 gcggtatcct cattttcaaa cagaaaaaaa gcccgctaga atggactttt atcctttctg
    19381 gcatactgtt aataatggtg ggcgtcgtgt tccttagttt attgaaataa aaaaagccaa
    19441 agaccacctc aaggtctttg gctttttttc atatactctt ctataacttg taacacgccc
    19501 gcttctttat tagaaggagc cacatgtttc gcagcagcaa gaacttccgg actgctttct
    19561 tgcattgcgt aactatgcga cgttaattgc aacatttcga tatcattatt cgcatcacca
    19621 aaagcgagta aatcatctgg cgccacttgc cattcattca atagttgctg aatcgcgctc
    19681 cctttcgtca cacccggaat tataatatca atacttccat gcccgctcga cacagcgcga
    19741 atttcaccgg caaacgtttg attcaaatct tccacaattt gccctgtctt agccacttcc
    19801 acatcaagcg cgaacttaat aaacgtatca tccggaagta catcgaacga atccaactct
    19861 tgcaactcaa aataatactt tttcgcaaat gctttaaaat cgggatcggc ggcttttaat
    19921 aaatacgcac tcttcacccc acaaagaatc acttgcaaat cttgatattc ttgaatcaac
    19981 gtccgcaaaa tcttttgaac taatctttcc tcaaaacgat tcacactccg aagttcccct
    20041 tgatgaaaaa taaccgcccc attttcagca acataaaaaa gctcctcatc cttccctgga
    20101 aaaaaagatt taagctgata atattgattc ccactcgcaa caataaattt aatcccacgc
    20161 ttcattaatt caacataaat cttctcaaat ctagcacgat catattcacc atttccatct
    20221 aaaaaagtcc cgtccatatc tacagaaatc gctctaatca tccgtttaag ctccttttaa
    20281 agttaatttt attctattat accaaatttt ttcgcgccac attgctacag cttgtttaat
    20341 tataaaatat gctatactaa actagcccat atcataaata acaagacacg aaaggagggc
    20401 ccaaaccttg tcaaaaggaa gattagaagc atttagtgat ggtgtttttg caattataat
    20461 tacaatcatt gttttaggaa tgaccttacc agacgtattt accgcggcta gcacacaggc
    20521 tttcttatgg gaaattttta tatttatcga aggcggatta attatcggac aattttggta
    20581 ttcacatagc aggctgtttg atcaagtcac attcatttcc acatctgccg tcttatttaa
    20641 tattttattt ttattagttt tgtcacttat cccattattt acaagagcaa tcatgcaaca
    20701 tccagatatg accgcaccga ttattggatt tgttatgact attttgatta cttcggtgat
    20761 attccaatta ttgcatcacg ctgtatatgg aaaagattca ggtatcgaca attggaagtt
    20821 tcgaatctct agtttcatat ttgttattgc acttggtatt atcagtttct tcgctccaca
    20881 aatatccacc attttattta ttattttccc aatcgctggt tggattattc aactcacaaa
    20941 ccgccgtcag cctccaaaat aaaaaaagtc agcgaaaaat ttcgttgact tcgctttact
    21001 attttgttat tctggcacta acaacaagaa aggagcataa ttatgagaag cctggatgca
    21061 gtagaaatac tcagacgtgg cgaaaccatt gagcgttata aagaaggcgg aaattcgatg
    21121 ttacctttga ttaaatcgat gcaacctgtt cgtttagaac cgattggcat gagagaactc
    21181 aaagtcaacg atatcgtatt ttgcaaagtt cgcggtagtt tttttacaca taaaatcagt
    21241 aaaatccgcg gtaaacaata tcaaatttct aataatcaca aacacgtgaa tggttggatt
    21301 acacgtaata gtatttatgg cattgtcacc aaaatttggt aaatgctagg taacatgcaa
    21361 cgaacaagtt ggatgttttt tattttgcct aaaatcatac tttttttcgg ataatttcta
    21421 gaacaatcat atacgaaaaa cagaagataa gaaaaataat cgtcagactc gaaatggaga
    21481 tttgttcaat cccatttaaa ttaagaacaa ttaacacaat tggtatcgtc aaagctaaaa
    21541 caatcagcaa ataatgggag aatgttttgc gattgttgat atatctttca tctttttcta
    21601 gtttttcttt ctcatattct cgcttcgttt tttcttcaga taagaataca gaactcagtg
    21661 taccaattaa agccgcaata atcataacaa ttggtgtacc gatatctcca aatatttttt
    21721 cccctttaat tattcctaaa agtggataca tatatataat aactaccgca accataatac
    21781 ctcgattaat aatgtatcgt ttcatgctaa ttctcctcca gttgaaaaat ctcttctatt
    21841 gttaaacgaa aatagcgtgc catcttcaaa cttagctcta aactaggatt atatttacct
    21901 ttttcaatag catggattgt ttgtcttgaa acttctaatg ctaaagctaa ttcattttgt
    21961 ccgattcctc tttcttcccg cagctgtttc actttattac ggactttcaa ttaaccacca
    22021 ccaaataaga agtatttaca gttattataa aataaataca gcttcacgta aagaaaactt
    22081 tacatttcgt ataaaaaaag tagctaaaat gattcattca tcttagctac tgatttttat
    22141 ttcaccattc ttgaatctgt tttatcgaaa tattgcttcc caatttgcaa tttctcgcca
    22201 taaagttcat caatagtaac aaactcatat ccttgattct ttaatttagt caatgtagcg
    22261 tcaaggctcg cagcagtggt tttatgaata tcatgcatta gtacaatcgc tccgtccgtt
    22321 gcaccagcaa ggactttttt cgttactata ccagcatttt tgtttttcca atcttctgta
    22381 tcaacagacc actgaattat tggaagacca atctcttcag ccacctgttt gtttactgca
    22441 ccatatggag ggcgcattgt agttggaaaa tatccagttt gatcaaatac tgctttttgc
    22501 gtttttaaaa tttggttgta cacttcttgt gtcgattgtt tagttaattg cgggtgatcc
    22561 catgagtggc tgccaacttg gtgcccttcc tctaattcac gttttactaa acccggattt
    22621 tgtatgacac tagagccaag tacaaagaat gtcgctttta cattgtggcg tttcaatgta
    22681 tcaagtacgc ctggtgttac cgaggcactt ggaccatcat caaaagtaag cgcaattcgc
    22741 ttgttggttt ttgcttttgg cacttctgga actttcacac tgcttggtaa gtagcgttta
    22801 ttcacagaac tagcaatatc agcaagtttt acttttactt tattcggttc cggtgcacct
    22861 ggtattttta ctggcaaaat tagttcagag ttcgtaattt cgaaatctgt ttgattccat
    22921 ttcactaaac tcttaatttc cccaagattc ccaacatctt ttaaagaaaa accccctgtt
    22981 ttaatcagtt cttcttcaac agctgttttt aaatttaatt tagtttgatt actttttatt
    23041 aatacttccc caagtgttaa caaagcacct gtttctgcgt cggttactat gtttttgcaa
    23101 atatcttttt tatctttgag tacaaattta gttctacctt cttttacgta ctctgattga
    23161 acagctttat aagatattgc ttgctcggcc attctatgct tttggtaagt gtaaaaaata
    23221 atcccttgag tttctttatc tctatttaac tttttaacct ctgcatctgt ggccttttca
    23281 atttcttttt ggataatttc gttgtctttt ttctcagttg ttttaggaat gtaagaaatg
    23341 atttccactc cattttcttt cttatccaag cggcggaaat ttcctccatc ttggtctttc
    23401 attagtctgt ccatctgcat tattactttg ttgcgcgact ttgaaaattg gtatttttgg
    23461 aaacctatta caccaacaaa aaccacggca ataatgagaa cggtaactag tgaaagtcta
    23521 atccacctaa ttttcacatt atgcacctca ccttagaaaa accttcccca gcttttctta
    23581 taaaacaatt atacatgaaa aaaagcaact ttctagcttt tgtactaaaa taggaaaaaa
    23641 ggaccaacaa ttctataaca attgtcaaaa aaaagacacg gataaagtgg gagcttttac
    23701 cgtgtccgat ttatagttac aggattaccc ctgaaaacta acatattgtg aagtatttca
    23761 ctattaattt taccgtaaaa aaacgcattc cgcaaatatt aaatgtcgtt ttttgtccag
    23821 tttattattt tatcctaacg caacatctaa aaccatcatt actgcaaatc ccgccatcgt
    23881 tgcagcagtt gctaaatcgg tcgaaccttc tacttgagat tcaggaatta attcctctac
    23941 aataacaaaa atcattgcac ctgctgcaaa ggccagcgca aacggcaaaa taggtgtaac
    24001 aaaaacaacc aatacagcac caattacagc gaaaattggt tcaactaccg ctgaaagttg
    24061 gccataccag aaacttttcc ctctcgagag cccttctccg cgcaaaggaa tggatactgc
    24121 cgctccctct ggaaagtttt gaataccaat accaagcgcc aaaactattg cagtaataag
    24181 cgtctccgtg tctccagtta tcactgctcc gaaagctacc ccaacagctg ccccttctgg
    24241 aatattatga atagtaatgg aaagaaccag taagatactt tttcgaagag aagtttttgg
    24301 tccttccttc gcttgctctg gaaacccgaa atgtaaatgt ggaataatac ggtcaataac
    24361 acgtaaaaat attcccccaa gcaaaaagcc aactagagct ggtacgaagg aaaacttccc
    24421 taaatcttta ctcatttcga ttgcaggggc aagaagcgac cagaagcttg ctgcgagcat
    24481 aacgcctgca gcaaatccta gcataacatt gccccatttt ttatttagat ttttaaagaa
    24541 aaatacgagt gaagctcctg ctgcggtaca agcccatgta aaaataccgg caagaagtgc
    24601 taacagtacc ggatttagtg acgataagta atttaacaat tcatgctctc ccttttccta
    24661 tgcttttatt taccagacca gccttgttta aagccttgag caaatgcacg agtcttattt
    24721 acgcctgttt tcacagccca aatggaacta taaacagata gtttagctgc cgttccagca
    24781 acatttccag ttttccgtgc aactttctct acctttgctc cgatttcttc accaatttct
    24841 tctatcggtt tcgccatttc tagcacctcc aaagcacttg tctttccttc atcataaagc
    24901 aatcaatcgg attattcaag ctgcttcctc tttatccttt tcactaatac gcttcctttc
    24961 gctatgatga atttctagct aattcatcta acctcgacat tctgattaat ctccatttac
    25021 ttagacaact actgtctttt tagcaaaata tgtaattttt ttatcatttt tttgattttc
    25081 tgaacatttt cattgaattt ctttgtaaaa agtacaaaaa acgactgatt taacttgtgc
    25141 attaactcac attatgcata taataatttt gttagacaaa aagggagagg aagatgtata
    25201 tgacgggatt aggaacttta ttgtttctag taggtattgg tgtattgatt tttggactgg
    25261 tgagctttag aaggaaaaat tggcctcgta aaaaaacaca aatcattatt attagttcta
    25321 ttttagctat tattattggt gttggaatta ttccgaccac agacgaggaa gcctcaactg
    25381 aagaaccaac caaacaagaa gaaaaaacgg agaaagttga taatacccca attttaaaag
    25441 cagaaacgac ttttacaaca gatgatgaag gtaccttggt cgtcgaaggg aaaacaaatc
    25501 caggggcaga agtaacgctt gatttcgttg caattcctga cgccgtgact acagctgatg
    25561 agaacggcgc tttcagtctt tctgtaaatc aactggataa agcacaagat gccgttcttt
    25621 ctattgtcat tgatggccaa acgaaagaac aaacgcttaa actagcacta acccctgctt
    25681 acgaaacaaa acttactgct aaagcggaag cagagcgagt agccgcggaa aaagcggaag
    25741 cagaacgagt agaacgcgaa cgtgtagcag cggaagaaaa acgcgcagct gatgcaaaaa
    25801 ttgcggctga aaagaaagcc gaagaagcta gagtggcagc cgagaaaaaa gctgcggaag
    25861 aaaaacgggt tgcagcagaa cgttcaaaag ctgcagctgc acaaccggac acgagtaacg
    25921 aacaaggaca aatggtttat atcactgcta ctggcaaaag atatcattat gatcaaaatt
    25981 gtcgcggctt aaataactct aatggcgaaa ctgctgtgac agttgctcaa gcaaaggcac
    26041 aaggcttaac tttatgtaaa tttgaacaat aaaaaaaaag caaaatttct tatcatgaga
    26101 aattttgctt ttctatttgt ttttaattga atttaggcta gattcatggt aaatttagat
    26161 agataatatc ggtaaaatat actaatgtaa agcaatccct actttaatta tacaacaaga
    26221 ggttctttac agtcaagtat tatttttcga aaaaaattgg gggataaata tatgaaacca
    26281 tatgtactca agtttcaaga aatacgaccg cattcagaag cacttgtcgg tggtaaagga
    26341 atgaatttag gtgcttgctc ttatatcgaa ggagtacatg ttcccgcagg tttttgcctg
    26401 acaacagaag cttacaagcg aaccttagcg gaaaacaatg aatttacgca actgctccaa
    26461 cgcctttctt ccctaaaaac aagtgacatg gatgctatta gagaaatcag cgaaacgatt
    26521 cgaacgctta ttcaacatac acaaatcccc tctgaaatag cgagttatat ggatgctacg
    26581 cttttagatg tgggtgggta tgagatgcct ttcgccgtac gttctagcgc cactgccgaa
    26641 gaccttcccc acgcttcctt cgctgggcaa catgatacgt atttaaatat tattggtaaa
    26701 gatgccttat tacaacatat cagtatgtgc tgggcttctt tgtttaccga acgcgcgatt
    26761 atttatcgca ttcaaaatca gttcgatcat cgtaaagtcc aacttgccgt cgttattcaa
    26821 caaatgattt cccccgaagc atccggaatc ctatttacgg ctgatccaat tacatcgaat
    26881 cgcaaatccc tctctatcga tgccagtttc gggctaggtg aagcgcttgt ttccggttta
    26941 gtttctgctg actcatacac agtccgagaa aatactatta cgaacaaaat aatcgctact
    27001 aaaaaactcg ccatttacag tttaaaagaa ggtggaacgg agactcgcat acttgaaaaa
    27061 tcacaacaaa ccaagcaaac attaactgac caacaaataa tacaacttgc gaaacttggt
    27121 agaaaaatcg aagcctattt tgggaaacca caagatattg aatggtgttt agcggaaggt
    27181 gctttttaca ttgttcagag tcgacctatc acgactttat atccaattcc agaagtaaac
    27241 gaacccggca atcgtgttta tatttctgtt gcacatcagc aaatgatgac tgacgcgatg
    27301 aaaccactgg gactttcctt ttatttaatg acgactcccg ccacgatgta tacagcagga
    27361 gggcggttgt ttgtcgatat tactcagagc ctgtcagcca aagtttctcg cgatatgatg
    27421 gtcaattcac tcggtcaatc agacccactt attaaagatg ccttgctcac tgtaattaac
    27481 aaaaaaggat tcctgcctcc actaccaacc gaggaaaatc caagtcaggc acccgtgtct
    27541 ggaaaaccac ccgtgcgtag cattcctgat tcatctagcg tttttgaatt agttcgaaac
    27601 agcgaaaact ctataaagca cttgaagcaa tccattgaaa cgaaaaacgg atctgatttg
    27661 tttgatttta tcgtagagga tttggaagaa ttaaagcgag ttttatttaa tcctactagc
    27721 attgatgcca ttatggcagg tatggacgct tcagcttggt taaatgaaca tatctaccag
    27781 tggctcggag aaaaaaatgt cgccgataaa ctgtcagaat cagccccaaa caatattact
    27841 tcacaaatgg gacttgaatt attagatgta gctgacgtca ttcgccccta ccctgctgtc
    27901 agagcctatt tagaacaaac gaaaaaccct gatttcatga atgaactagc tactttagaa
    27961 ggtggtgcag aaaccaaaaa agcgctagaa gattaccttc aaaaatacgg gatgcgctgt
    28021 gcgggtgaaa ttgacttaac caaaactcgt tggattgaaa acccgctaac gcttattccg
    28081 ctgattttaa gtaacatcaa aaatttcgac tccagcgcga gtatgcacaa atttgctcag
    28141 ggagaaaaag aagctttcca taaagaacaa gaaatcctaa gacgtttgca agagcttccg
    28201 gacggggaac aaaaagcgat ggaaacaaaa gaaaaaatcg atattttacg tcatttcatc
    28261 ggctatcgtg agtatcctaa atacgggatg attaatcgct actttattta caaactggct
    28321 ttacttcgag ctggcgaaca acttgtaaaa gatggcattc tgcaagagca tgaagatatt
    28381 tattttcttt actttgagga actgcgcgaa gtcgtgcgta ctggtcaagt tgattacgaa
    28441 cttattaacg ctcgaaaacg tgatttcgcc acttttgaaa aattaacgcc accacgcatc
    28501 cttacttctg atggagaaat gattaacggc gaatacaaac gcgaaaatct ccctaaagac
    28561 gccattcttg gacttccagt ttcatcaggg acagttgaag gtcgcgctcg cgtcatttta
    28621 gaaatggaaa aagcggattt agaagatggc gatattcttg ttacggctta tactgaccct
    28681 agttggactc ccgcatttgt atctattaaa gggcttgtga ccgaggttgg cgggcttatg
    28741 acgcacggag cagtgattgc gcgcgaatac ggccttcccg ctgtcgtggg tgtcgaaaat
    28801 gcaactacca ttataaaaga tggccagcaa attcgcatca atgggacaga aggctatatt
    28861 gagattcttg attaaaccaa aaacccagta atctccattt taggaaatac tgggtttttt
    28921 aattatgctt tttttctcca aatataaaac gcggatgatg aaagtaatat cccggcgaat
    28981 agtgtttgcc acgggttatt atctccagtt ttcggaagtt tagctgttgt tagttctgga
    29041 gtattttccc ctgctgttac tgtgatgtta ttattttggg ctggcatact agttgcactc
    29101 ggttcattta tagtgattga tccattggta ggtttcgagt ctgattcgtc agatgggcta
    29161 ggaataagtg gcgtttcttt actgaaatgt gcgtacaaat taatatcgtt cgcaggcatt
    29221 ttcatcgtgt taaaatccca ttttgttccg cctacttctg cgtcatacca cccatcgaaa
    29281 aggaaacctt gtttggttgg agcagtcggt tcattaagta aggtatcata tgttatcgtt
    29341 tcattcgtta ccgcaccatc tatatcaaaa ttagcttgat agttgttgat ggtaaaatgc
    29401 gcatataaag tgacatcatt tgcgggcatt ttcattgttt tgaaatccca cttattaccg
    29461 cctgtttctg cgtcatacca gccatcaaat gtataacctt gtttagttgg agtcgccggt
    29521 tcattgagta aggcatcgta tactattgct tcattcgtta ccgcaccatc tatatcaaaa
    29581 ttcacttggt aactgctgac agtaaaatgt gcatataaag taacatcatt tgcgggcatt
    29641 ttcatcgttt tgaaatccca cttattaccg cctgtttctg cgtcatacca accatcgaat
    29701 gtataacctt gtttggttgg agcggtcggt tcattgagca aagtatcgta tactaccgct
    29761 tcattcatta ctgcgccatc tatatcaaaa ttcacttgat aactatttac ggaaaaatgg
    29821 gcatatagca tgagatcatt tgcaggcatt tgcccagttg taaagtccca ttttgttcca
    29881 cctgtttcgg cgtcgtacca accatcaaat gtataacctt gtttggtcgg gttcgtaggt
    29941 tctggaatta gatcttcttc tgttacagtt tttacttcgc ttgtattgcc gtctatatta
    30001 aatgtgacat tgtagtctac tggctcattt agcggttgaa ttatgatacc agtataacta
    30061 cttgtggttg atcccaccgc cacatcttgc ttgaatgtat atcttacttc tggaagatag
    30121 ctcggcgaag accaattcac gtttggcgcg tcgtaggttc cattattgct aattgtctta
    30181 ggagtaacta gtgttccatc tatgctagtt atattattcg gaacagataa tgtcttcgaa
    30241 aaattacgtg ctggtttttt tatcacctga tttgcaaagt cagcggaatc cattttactt
    30301 aaacttgcta atggtcttat gtctgtaata tgattttgcg ataaaaataa agtagttaaa
    30361 ttagttaatc caccaatcac ttccatatct tcattcccaa gttgattatt attcaagaat
    30421 aaagaattca attgggaaag attatttaga acagatatat cactaatttg gttactacca
    30481 acattcaaca tttttaattt agttaaatct ttaaccgcat taatatcgct aatttgattg
    30541 gtaccgattt ctagccaagt taattgtgat agattagcta atgggcttaa atcagtaatt
    30601 ttattatttc ctatctttaa agaatttagc cttgtcatat
//
LOCUS       DASEAA010000013        30546 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.013, whole genome shotgun sequence.
ACCESSION   DASEAA010000013 DASEAA010000000
VERSION     DASEAA010000013.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 30546)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30546)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30546
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.013"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..76)
                     /locus_tag="U0342_000498"
     CDS             complement(<1..76)
                     /locus_tag="U0342_000498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fatty acyl-CoA reductase"
                     /protein_id="HEM2421860.1"
                     /translation="MNPFLKNKTVLITGASNGLGAEIAR"
     gene            complement(81..1001)
                     /gene="rnz"
                     /locus_tag="U0342_000499"
     CDS             complement(81..1001)
                     /gene="rnz"
                     /locus_tag="U0342_000499"
                     /EC_number="3.1.26.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Z"
                     /protein_id="HEM2421861.1"
                     /translation="MELVFLGTGAGVPSRGRNVTSIALSMLNERNTIWLFDCGEATQH
                     QIMRSQIKLSKLEKIFITHMHGDHIFGLPGLLSSRSFQGGDSNLTIYGPAGIAEYVET
                     SLRLSGTRLTYKINFEEIEPGLIFEDEMFLVTADDLDHGVRSFGYRIVEKDKQGALNA
                     EKLKADGVEAGPVFQKLKNGEIVTLADGRVIDGKNYIGEPQKGKIISIFGDTKETANE
                     LELALNADILVHEATFEGDKAKMAGEYMHSTTLQAANLAKTANVKKLILTHISSRYDR
                     DASKELLIEAKTIFENTEIAYDLAVFPIGE"
     gene            1302..2777
                     /locus_tag="U0342_000500"
     CDS             1302..2777
                     /locus_tag="U0342_000500"
                     /EC_number="1.1.1.49"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate dehydrogenase"
                     /protein_id="HEM2421862.1"
                     /translation="MTDELEQKALITIFGGTGDLANRKLYPSLYHLYSKGSLGDNFAV
                     IGTARREWSNDFFRDKVKESIKDIDGSEKDADAFASHFYYQSHDVTNKESYVTLKDLS
                     DELDAKYELGGNRLFYLAMAPNFFGTIASRIKSEGFVDTDGFHRLIIEKPFGHDLASA
                     EELNNSLRQAFKEDEIYRIDHYLGKEMIQNISVIRFANSIIESLWNNRYIDNIQVTLT
                     EVLGVEDRGRYYDESGALRDMVQNHILQIVSLLAMEPPINLTTREIRHEKVRALRSLR
                     VFEGKEVHQNFIRGQYGPGEVGGKELKGYRQEDNVDPHSNTETFVAAKLEIDNFRWAG
                     VPFYIRTGKRLAKKTTQIAIQFKDVPLNLFGQQQSLGGNVLVIHIQPDEGITLHLNVK
                     EPGQGMVTMPVNLNYIHSSPDGMNTPEAYEKLILDCLRGDATYFSHWDEVSLSWNFID
                     HIADVWTNTKDHFPNYKSGSMGPKEADDLIQRDGFQWFPID"
     gene            2896..3327
                     /locus_tag="U0342_000501"
     CDS             2896..3327
                     /locus_tag="U0342_000501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1694 domain-containing protein"
                     /protein_id="HEM2421863.1"
                     /translation="MAENIDDYLEKGMYGAKEINPAEKKKYLGTYRERVLVALTKEEV
                     LTQEYLPELEKAILENSDSKLLLNGLLHYNSLRPYIKLAEKCKHEFSIVTRLEGETDI
                     YLVLACQKAVNKEDIHLYKEAEVEQEEEPVSLLEKVRKLFN"
     gene            3359..3496
                     /locus_tag="U0342_000502"
     CDS             3359..3496
                     /locus_tag="U0342_000502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465504.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421864.1"
                     /translation="MLHIITLSLAILMALQTIYFFIRKNVNMGVMFLLITAALLLLST
                     I"
     gene            complement(3479..3964)
                     /locus_tag="U0342_000503"
     CDS             complement(3479..3964)
                     /locus_tag="U0342_000503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421865.1"
                     /translation="MGISNKTNLIIIASGKPKIWDKSPDIGPVKASEVYTGTFHRLSR
                     AYAEQFANEYLILSPKYGFLRPDDIISKTYDVRFTMKGTSADTIQLEELKEQWQKLQI
                     NPTEPIPMLGGKKFRGLLTSITDGKQVFNFPLDGASGIGVMQRNLKQAIETGIPLNRT
                     E"
     gene            complement(3937..4464)
                     /locus_tag="U0342_000504"
     CDS             complement(3937..4464)
                     /locus_tag="U0342_000504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2421866.1"
                     /translation="MDNLETDRLILINYTLEMIQATINGTEALEKASGYHVSPDWPGI
                     DFFFYLPYVLENVKKDDRMIKWTRLVVLKEENKIIGEIGGQGNPDETGEIEIGYSIVP
                     DYQNKGYMSEALIGMIAWLEEQPAIHRIFARSYEQNMASIQVLKHNHFVHIKEKDTEE
                     KQGRVMMWEYPIKRT"
     gene            5155..6849
                     /gene="ilvD"
                     /locus_tag="U0342_000505"
     CDS             5155..6849
                     /gene="ilvD"
                     /locus_tag="U0342_000505"
                     /EC_number="4.2.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxy-acid dehydratase"
                     /protein_id="HEM2421867.1"
                     /translation="MRSDKIKKGVEQAPARSLLHATGQIKSPGDMDKPFIAICNSYID
                     IVPGHVHLRELADVAKEAIREAGGIPFEFNTIGVDDGIAMGHIGMRYSLPSREVIADA
                     AETVINAHWFDGVFYIPNCDKITPGMLLASVRTNVPAIFCSGGPMKAGLSAHGKALTL
                     SSVFEAVGAFKDGSMSQEDFLDMEANACPTCGSCAGMFTANSMNCLMEILGMAVPGNG
                     TTLAVSDARRDLIRESAFHLMDLVKKDIRPRDIITKDAIDDAFALDMAMGGSTNTVLH
                     TLALANEAGIEDYDLERINDIAKRVPYLSKIAPSSSYSMHDVHEAGGVSAIVKELVDL
                     GGAIHPDRITVTGKTIRENVADAKINNTDVIHPKENPYSPVGGLSMLFGNIAPKGAAI
                     KVGGVDPSVQVFKGEAICFSSHDEAVEAIDNHTVREGHVVVIRYEGPKGGPGMPEMLA
                     PTSSIVGRGLGKDVALITDGRFSGATRGIAVGHISPEAAAGGPIALVHDGDIITIDLP
                     NRTLNVDVSDEVLEERRKELPKFKAKVKTGYLARYTALVTSAHTGGILQIPEDLID"
     gene            6867..8588
                     /gene="ilvB"
                     /locus_tag="U0342_000506"
     CDS             6867..8588
                     /gene="ilvB"
                     /locus_tag="U0342_000506"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biosynthetic-type acetolactate synthase large
                     subunit"
                     /protein_id="HEM2421868.1"
                     /translation="MIDTTKTNEKATKKQNKSGAELLIDSLKKQQVEMIFGYPGGAVL
                     PLYDAFYDCDIPHILTRHEQGAIHAAEGYARVTGKPGVVVVTSGPGATNVLTGIADAM
                     SDSIPLVIFTGQVHTPGIGKDAFQEADMIGLTIPITKYNYQVRDVRDLPKIVNEAFHI
                     ASTGRKGPVVVDIPKDMGIIQTESVRPDTIDLPGYQPTYSPNPLQLEKLMQSLSAASK
                     PLILAGAGVNHARATAELLEFAERYQIPIVNTLLGLGSFPQSHDLFLGMGGMHGSYAA
                     NMALTDCDLLINFGSRFDDRLASAPKEFATKATIAHIDIDPAEIGKIIETQIPIVADI
                     NETLTQLLQMELPVHPDTSHWYKLNMTRKNRHPFNFDRTKKAEIKPQRVIELIGEITQ
                     GEALVSTDVGQHQMWAAQFYPFQFDHQIITSGGLGTMGFGFPAAVGAQLAFPDKTVVA
                     IVGDGGFQMTNQELAILNDYQINVKTVIINNGSLGMVRQWQEKFHGERYSHSIFTSQP
                     DFVKLAEAYGVKGVRLTNPETLEKDLRKAFAHPGPIVIDVHVAKDELVLPMVPSGKPN
                     HQMEGVE"
     gene            8589..9080
                     /gene="ilvN"
                     /locus_tag="U0342_000507"
     CDS             8589..9080
                     /gene="ilvN"
                     /locus_tag="U0342_000507"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase small subunit"
                     /protein_id="HEM2421869.1"
                     /translation="MRRIITATVNNSSGVLNRITGVISRRQYNIDSISVGWTEIPNVS
                     RITIVVHVDSLYEIEQVTKQLNKQIDVLKVSDITDDAHIERELALLKINSPAALRSEL
                     NAVIEPFRATVIDVGTKNVVIQVTGTSEKIDAFVDTVRPYGIKQMARTGVTGFTRSPK
                     KMG"
     gene            9179..10174
                     /gene="ilvC"
                     /locus_tag="U0342_000508"
     CDS             9179..10174
                     /gene="ilvC"
                     /locus_tag="U0342_000508"
                     /EC_number="1.1.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketol-acid reductoisomerase"
                     /protein_id="HEM2421870.1"
                     /translation="MTKVYYEDAVKNNALEGKTVAVIGYGSQGHAHSQNLRDNGNNVI
                     IGIREGKSAESARNDGFDVYSVSEAAEKADVIMILLPDETQGETYENEIKPNLKAGNA
                     LVFAHGFNIHFDVINPPNDVDVFLVAPKGPGHLVRRTFVEGGAVPSLFAIYQDATGNA
                     RDTALSYAKGIGATRAGVIETTFKEETETDLFGEQAVLCGGATHLIQAGFETLVEAGY
                     QPELAYFEVLHEMKLIVDLMYEGGMEKMRHSISNTAEYGDYVSGPRVVTADTKKAMKE
                     VLTDIQNGNFAKSFIDDNKNGFKEFHRMRKEQQGHQIEKVGAELREMMPFVKPQH"
     gene            10332..11870
                     /locus_tag="U0342_000509"
     CDS             10332..11870
                     /locus_tag="U0342_000509"
                     /EC_number="2.3.3.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-isopropylmalate synthase"
                     /protein_id="HEM2421871.1"
                     /translation="MKKIQFFDTTLRDGEQTPGVNFDVKEKIQIALQLEKLGIDVIEA
                     GFPISSPGDFECVKAIAKAIKHCSVTGLARCVEGDIDRAEEALKDAVSPQIHIFLATS
                     DVHMEYKLKMSRAEVLASIKHHISYARQKFDVVQFSPEDATRSDRAFLIEAVQTAIDA
                     GATVINIPDTVGYTNPTEFGQLFQDLRREIKQFDDIIFASHCHDDLGMATANALAAIE
                     NGARRVEGTINGIGERAGNTALEEVAVALHIRKDFYQAETNIVLNQFKNSSDLISRLS
                     GMPVPRNKAVIGGNAYAHESGIHQDGVLKNPDTYEIITPALVGVDKNSLPLGKLSGKH
                     AFNTRMEEMGYTLTEQEQKDAFKRFKQLADAKKEVTEEDLHALILGQSSESADDFELK
                     HLQVQYVTGGVQGAIVRIEERDGALVEDAATGSGSIEAIYNTINRLMKQDIELTDYRI
                     QAITAGQDAQAEVHVVIKNDKGAVFHGIGIDFDVLTASAKAYLQASGKSKTASKQADF
                     EEVK"
     gene            11872..12924
                     /gene="leuB"
                     /locus_tag="U0342_000510"
     CDS             11872..12924
                     /gene="leuB"
                     /locus_tag="U0342_000510"
                     /EC_number="1.1.1.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydrogenase"
                     /protein_id="HEM2421872.1"
                     /translation="MTYKITSLAGDGIGPEIMTSGLQVLEAVAKKYNHTFEIESHPFG
                     GAGIDVAQDPIPSSTLKACRDADAILLGAIGGPKWDNAPKRPEDGLLALRKALGLFAN
                     IRPIQVPSSITHLSPLKKEIVENTDFVVVRELTGGLYFGEPKYWDNEAAVDSLTYTRA
                     EIERIIEKAFEIAATRNKKVTSVDKANVLASSKLWRKIADEVASRHPDITLEHLYVDA
                     AAMLMIQRPTTFDVIVTENLFGDILSDEASVITGSLGMLPSASHAENGPSLYEPIHGS
                     APDIANQNIANPMSMISSVSMMLRQSFSLFEEADATDAATARTMQAGFLTADLGGNTS
                     TTDFTNEVLKQIEGGE"
     gene            12926..14314
                     /gene="leuC"
                     /locus_tag="U0342_000511"
     CDS             12926..14314
                     /gene="leuC"
                     /locus_tag="U0342_000511"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase large subunit"
                     /protein_id="HEM2421873.1"
                     /translation="MGKTLFDKLWNRHVIYGKEGEPQLLYVDLHLIHEVTSPQAFEGL
                     RMENRPLRRPDKTFATMDHNVPTEDIFNIQDLVAKKQIEALQTNCEEFGVTLADMGSD
                     RQGIVHMVGPETGLTQPGKVIVCGDSHTATHGAFGAIGFGIGSSEVEHVFATQTIWQQ
                     KPKSMGIEINGNLPKGVYAKDIILHLIATYGVAFGTGYAVEYYGETIRNMSMEERMTI
                     CNMAIEGGAKMGMMAPDETTFEYVRGREYAPADMDKAISDWKTLQTDPDAEYDLHIKM
                     DASILEPYVTWGTNPEMGVPFSKAFPEIKDMNYERAYEYMGLKPGQTAEEIELGYVFI
                     GSCTNARLSDLEEAARIVKGNKVKNNIRALVVPGSRQVRNAAESIGLDKIFIEAGFEW
                     REPGCSMCLGMNPDQVPDGVHCASTSNRNFEGRQGKGARTHLVSPAMAAAAAINGHFI
                     DIRKEAVISGGN"
     gene            14301..14882
                     /gene="leuD"
                     /locus_tag="U0342_000512"
     CDS             14301..14882
                     /gene="leuD"
                     /locus_tag="U0342_000512"
                     /EC_number="4.2.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-isopropylmalate dehydratase small subunit"
                     /protein_id="HEM2421874.1"
                     /translation="MEEIKVHIGKTVALMNDNIDTDQIIPKSFLKRIERTGFGEFLFD
                     SWRYLPNRKPNPDFPLNAPDRQEATILITGDNFGCGSSREHAAWALLDYRFRVIIAGS
                     YSDIFYMNCTKNGVLPIVLPREAREKLAKIAADENVTIDLPNQQVISSVGTYPFEIDA
                     TWKNKFINGLDDIAITFEHIDAIKAYEQKVDSI"
     gene            14901..16169
                     /gene="ilvA"
                     /locus_tag="U0342_000513"
     CDS             14901..16169
                     /gene="ilvA"
                     /locus_tag="U0342_000513"
                     /EC_number="4.3.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine ammonia-lyase"
                     /protein_id="HEM2421875.1"
                     /translation="MELVDLLVTEEDVEKAYEVLKAVVKHTPLEYDFYLSEKYHCNVY
                     LKREDLQRVRSFKLRGAFYAISRLSAEQLEKGVVCASAGNHAQGVAYTCKRMTVPATI
                     FMPTTTPQQKVSQVKFFGGSNVEVVLVGDTFDASATAAKEFAATHGQTFIPPFDDPDI
                     IAGQGSLAVEMVKDLNKAHEQADYVFAGIGGGGLISGVATYLKAKSPITKIIGVEPDG
                     APSMTAALKQNQVVTLDKIDKFVDGAAVKEVGGLTFQHAKVLVDEVTTVSEGAVCSTI
                     LDMYTKQAIVAEPAGALSVAALEIYREEIKDKTVVCIVSGGNNDINRMQEIEERSLLH
                     EGLKHYFIVNFSQRPGALKEFVNDVLGPHDDITKFEYTKKVNRGNGPVIIGVLLQDKN
                     DYEGLLERVAAFDPSYIPINDNQTLYTLLV"
     gene            16362..17081
                     /gene="budA"
                     /locus_tag="U0342_000514"
     CDS             16362..17081
                     /gene="budA"
                     /locus_tag="U0342_000514"
                     /EC_number="4.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate decarboxylase"
                     /protein_id="HEM2421876.1"
                     /translation="MDTVRKNRLFQHSTMAALVGGLFSGTTSFKELLQHGDLGIGTLD
                     QFDGELIILDGEAFQIRSDGQAYKVKPEDTTPYASTTFFDADTSFSVSEPTSKQAVEE
                     KIAELVQGPNVFYAVKMTGNFRYVDTRVVPKQQRPYPPLIEAVKEQPTYHFEYITGTI
                     VGFWTPAYISGIGVSGYHVHFIDDMRKIGGHVFDYEMLEGTVEVAQQTEFELQLPQTT
                     EFLRSDLSTPDMLEQIEAAEN"
     gene            complement(17118..18419)
                     /locus_tag="U0342_000515"
     CDS             complement(17118..18419)
                     /locus_tag="U0342_000515"
                     /EC_number="2.4.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrimidine-nucleoside phosphorylase"
                     /protein_id="HEM2421877.1"
                     /translation="MRMVDIISKKRDGKALSTEEIQFFIDGYTNGEIPDYQASALAMA
                     IFFQDMNDQERADLTMAMVGSGDTIDLSAIEGIKVDKHSTGGVGDTTTLVLAPLVAAV
                     GVPVAKMSGRGLGHTGGTIDKLESIEGFHIELDKKDFIDLVNRDKVAVIGQSGNLTPA
                     DKKMYALRDVTGTVNSIPLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTDEDAENLA
                     HAMVRIGNNVGRNTMAVISDMSQPLGEAIGNALEVKEAIDTLKGQGPEDLTELVLVLG
                     SQMVVLAKQAETLDEARAKLIEVIENGAALEKFKTFLSNQGGDASIVDHPEKLPQAKY
                     QIEVPAKSSGFVSQIVADEIGIAAMILGAGRATKEDEINLAVGLMLRKKVGDAVKEGE
                     SLVTIFADQEDVENVKAKIYENIQISDHATAPTLVHKVITE"
     gene            complement(18550..19560)
                     /locus_tag="U0342_000516"
     CDS             complement(18550..19560)
                     /locus_tag="U0342_000516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEM2421878.1"
                     /translation="MAATIREIAEKTGVSITTISQILNGKGERFSDLTREKVLKTAKE
                     MSYKPNFFAKNMIVSHTNTIGMIVPEVTDPFFSQMVKGAEDYLNKEGYMIMLCNSSND
                     KEREDLYVEELLHRAVDGLIIASPNILLSGVIKRMEEKRSPYILLDRQRNPRQEGNIA
                     IDDFKGGYMATEHLIKLGHTRIGIIISDTSFYNVHERYEGYLACMKDYKLTVKDTWIV
                     SGDQTMNGGYVATQKLLQENLSAIFATNDLMAMGTYRAALEKNLHIPTDLSVIGFDDI
                     ELSEYMTPPLTTIRQPIYGIGEIAAELLLKNLQNPTEKLENRLLDISLINRSSTKSID
                     NQ"
     gene            complement(19640..20311)
                     /gene="deoC"
                     /locus_tag="U0342_000517"
     CDS             complement(19640..20311)
                     /gene="deoC"
                     /locus_tag="U0342_000517"
                     /EC_number="4.1.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribose-phosphate aldolase"
                     /protein_id="HEM2421879.1"
                     /translation="MTIAKMIDHTALKPDTTKEQILTLTKEAREYGFASVCVNPTWVK
                     LSAEQLAGAESVVCTVIGFPLGANTPEVKAFEVKDAIQNGAKEVDMVINIGALKDKDD
                     ELVERDIRAVVDAAKGKALVKVIIETCLLTDEEKVRACEIAVKAGTDFVKTSTGFSTG
                     GATAEDIALMRKTVGPNIGVKASGGVRTKEDVEKMIEAGATRIGASAGVAIVSGEKPA
                     KPDNY"
     gene            complement(20374..21321)
                     /locus_tag="U0342_000518"
     CDS             complement(20374..21321)
                     /locus_tag="U0342_000518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM2421880.1"
                     /translation="MDKQKEQLSVEVARLYYQADLGQQEIATRLGVSRPTVSRLLQNA
                     KTKGYVKIEVQDPFSNLTELAVALKEKYQLKNVTVAFSQTNDYSEITKQISQSAAEYL
                     EEIIHDGDILGVSWGTTMYKIAQKLAPLKAEIKVVQLKGGVSHSDVNTYAAETLALFG
                     AAYDTAPVSLPLPVVLDNPLAKQMVEADRHIKNIIELGKKANISIFTVGTVRDEALLF
                     RLGYFSDQEKARLKEKAVGDICSRFFTIGGEIADEKMDERTIGIDLQDLKQKETAILV
                     AGGERKIKAIHGALRGGYANHFITDQFTAKQLLEQNFIN"
     gene            complement(21419..21835)
                     /locus_tag="U0342_000519"
     CDS             complement(21419..21835)
                     /locus_tag="U0342_000519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2421881.1"
                     /translation="MKAIFVCTHGNAAKELIQSAEMICGKQENTSFVPFEVNESAENL
                     QAKIASEVAKLDLTEGILFLTDLKGGTPFNVLVRLLRNFDAVELVAGVNIPLLLEAFI
                     SRETLSLKELANQVAETGRLGIYEYAAPLEEIEEDF"
     gene            complement(21852..22847)
                     /locus_tag="U0342_000520"
     CDS             complement(21852..22847)
                     /locus_tag="U0342_000520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2421882.1"
                     /translation="MLKFDEQKVRENMEGALKLRPQINEVVDQIHDRGFSNICWLGIG
                     GTYASAMQAVVHMKEKTALETFYENAAVFLTTGNKRVTKDTLVVISSVTGSTQEVVDA
                     VKKCNEIGATVFGFIDKAEAELATLVDHLISYPLNEQLKFFMVADRFMYLAGEFEDYD
                     AFYQEMDQHFAEGIVEVEKAADKFGQEFALKHHQDDIHYFVGAGNQWGATYSYAMCYW
                     EEQHWIKTKSIESHEFFHGMFEIVERDTPVTIYVTEDSQRSLSERVVNFIPQICANYT
                     VIDAKDYDMPGISAKFRGALSPFIIHAVNNRIDVHVEKINCHPMEIRRYYRQLDY"
     gene            complement(22870..23934)
                     /locus_tag="U0342_000521"
     CDS             complement(22870..23934)
                     /locus_tag="U0342_000521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2421883.1"
                     /translation="MKNMDYYIRSEQSVYENIIRSRKDLLQKVIQMEKVDYQAIVIFA
                     TGSSSNAAFAAQLYMSDKLAIPVYVEEPSTAGNYMLHLNKNTLYIAISQGGHSYSTIH
                     LVKEIERQGGIVFTLTSDLTSPIAKESTRAIDLGMGIEEMPYVTLGYSATILMLNLMA
                     LELALLQEKMLEEEYQAEIAELKKITANLPKVVEKSAAWVDAHTQELMEAERVFFIGY
                     GAAYGVAREGETKVTETIRITAFGKELEEYMHGPYIGLSEQDYIIFLEPQGLLEDRAE
                     KLKQFLQGHVKKIRTFYADAGGEKTDDLLLGVRAAELLTPLFMTIPVHLLSFEISKKK
                     GINLEVSAFPEFDQITKSKI"
     gene            complement(23947..24768)
                     /locus_tag="U0342_000522"
     CDS             complement(23947..24768)
                     /locus_tag="U0342_000522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM2421884.1"
                     /translation="MKMKSSDVLTKKDLMKVFWRSFTMEWSWNYERQSNLGYGFSMLP
                     ALNKIFKNDKDKRISSYQRHLEFYNVTPWLSTFPLGISIAMEEQSAKDKDFDTDSINN
                     IKVALMGPLSGIGDSFFWGTLRVIATGIGTSLALQGNMLGPILFLLIFNIPAILTRYY
                     GLFIGYNIGANFIEKIQKTGLMDKLSYGASVIGLAVVGAMVATMVNINMPMKFGSGDD
                     AVTIQSVFDGIVPGILALGFTFFIFWLDKKGLKAHWILLLIAGIGILGAFTGLLK"
     gene            complement(24749..25567)
                     /locus_tag="U0342_000523"
     CDS             complement(24749..25567)
                     /locus_tag="U0342_000523"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2421885.1"
                     /translation="MEQFGTAILLALAAMLANGEYLFGSSMLSRPLVTCTLAGLIMGD
                     VQMGIIMGATLELAFVGSFSIGASIPPEIISGSILGTAFAISTGESTAVALALGIPIA
                     SLVLVVKNLCFIFVLPYFVHKADKYALEGNSRGISRMQLLGGFLSINLPIGIIVATSY
                     LVGSPVIQNVLDAIPAFVITGLGIATGLLPAYGFALLLKLMVNKKNAVFFVFGFALAV
                     YLKVPVTGVAIFAACLALILTGYATLKNDNGPKNSNTEPALANDGGINYEDEEF"
     gene            complement(25590..26057)
                     /locus_tag="U0342_000524"
     CDS             complement(25590..26057)
                     /locus_tag="U0342_000524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465526.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2421886.1"
                     /translation="MIQFLRVDHRLLHGQVAVSWFNALDVNTILVANDGVAADDFRKS
                     AIRLAKPEAAKLVMKSIDESIEAINSGVTDKYNMLIVVESVEDAYKLIHGTNGKIPML
                     NLGGTKQREGTANFSKAINLTPEEVAKLKELQKENVDVFMQQVPNEKKVTFEA"
     gene            complement(26077..26778)
                     /locus_tag="U0342_000525"
     CDS             complement(26077..26778)
                     /locus_tag="U0342_000525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2421887.1"
                     /translation="MGAKKPLFEVIASEIKDSINRDEYKPGMLMPNETALQEIFSSSR
                     TTIRRAVDLLVEEGLVVRKNGVGLYVQPKLTAQNILEMTGVMKTDTNENLKKDIKDFY
                     IRKAGKFYAEKFGIKENELVYSIKFVQKSEHGVTLDRLILPLSLYPDLQAKDFQIINI
                     IELVNSGKYKLFELEQELQLILAGNEQIKNMHIDENDPVFKLSSVFYAENEMPIAIQY
                     HYEDAESTKYVVDFN"
     gene            complement(26780..27511)
                     /locus_tag="U0342_000526"
     CDS             complement(26780..27511)
                     /locus_tag="U0342_000526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2421888.1"
                     /translation="MEYKDLSPAVQSEEQLRQLIQEKVAAGETSFPSERALENELGVS
                     RTTLRRSLDTLEKEAVIQKRNRKGIEINQKQTINILQMNSMSSQLPGEQKVEVMSQEI
                     VAGKDEVNHFLNLSEDKPVFKLVRRRIVDNKPFSYEISFIDSTRFAGIEKIDLNNSSL
                     YNVLEKQFAIKPTYGREELRFVSANEKLAEALKVPLNTPLFEVVSKAFDQNDEPFEYS
                     KQYLIGNQIKYKINAKNIFDYLEDE"
     gene            complement(27684..28679)
                     /locus_tag="U0342_000527"
     CDS             complement(27684..28679)
                     /locus_tag="U0342_000527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2421889.1"
                     /translation="MEYVKFGNTGMDVSKICLGTMGFGDKDKWIHKWVLNEANSRPII
                     KKALDLGINFFDTANIYSYGESEKIVGRALKDYANRDDVVLATKVQQTMRPDRPNSGG
                     LSRKTILSEIDHSLKRLETDYVDLYIIHRFDENTPIEETMEALHDVVKSGKARYIGAS
                     AMYAWQFQKAQRVAERNGWTKFVSMQNHYNMIYREEEREMIPFCRDEKIAITPYSPLA
                     SGRLTRDLNETTNRSETDPVQKSKYDDMMNADRGIIERVAELAETHQVSRDKIALAWL
                     LNKDEITSPIIGAQKESHLESAVEALNIQLTAAEVNYLEELYIPHPVVGALPTTK"
     gene            complement(28796..30493)
                     /gene="alsS"
                     /locus_tag="U0342_000528"
     CDS             complement(28796..30493)
                     /gene="alsS"
                     /locus_tag="U0342_000528"
                     /EC_number="2.2.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetolactate synthase AlsS"
                     /protein_id="HEM2421890.1"
                     /translation="MAKLEKDQEKVITQGKSGADLVVDSLINQGVTHVFGIPGAKIDK
                     VFDVMEERGPELIVSRHEQNAAFMAAAIGRLTGKPGVVLVTSGPGASNLATGLVTATA
                     EGDPVVAIAGNVTRQDRLKKTHQSMDNAALFRPITKYSEEVVHAESIPEAITNAFRSA
                     AEPNQGAAFVSLPQDIVNEPNVPVKAIRPLAKPENGPASKEQVAKLVARLKKAKLPVL
                     LLGMRASSPEVTGAIRRLLQKTSIPVVETFQAAGVISRDLEDNFFGRVGLFRNQPGDI
                     LLNKADLVITVGYDPIEYDPKAWNASGDRTIVHLDDIRADIDHYYQPVTELVGNIALT
                     LDRVNAKFSGLELAEKELETLKELHAQLEERDVPPESDETNRVHPLSVIQTLRSAIDD
                     NVTVTVDVGSHYIWMARHFRSYEPRRLLFSNGMQTLGVALPWGIAATLVHPGEKVVSI
                     SGDGGFLFSAMELETAVRLRAPLVHLVWNDGSYDMVAFQQKMKYGKEAAVRFGDVDIV
                     KFAESFGAKGLRVTKPSELSDVLKEALETEGPVVVDIPIDYRDNIKLGETLLPDQFY"
BASE COUNT         8819 a         6215 c         5996 g         9516 t
ORIGIN      
        1 gtcttgcgat ttcagctcca agaccgttag aagctccggt aattaaaacc gttttattct
       61 tcaaaaaagg gttcattttg tcactctcca attggaaaaa cagctaagtc ataagctatt
      121 tcagtatttt caaaaatagt ttttgcttct attaatagtt ctttacttgc atctcgatca
      181 tatcttgagc tgatatgggt taaaattaat tttttgacat tggcggtttt agcaagattg
      241 gctgcttgaa gcgttgtaga atgcatgtat tctcctgcca tttttgcttt atcgccttca
      301 aacgttgctt catgaaccaa aatatcggca ttcagtgcta gttctagttc gttagcagtt
      361 tcttttgtat caccaaaaat actaataatc ttcccttttt gcggctctcc gatataattt
      421 ttaccatcaa tgacgcgtcc atcagctaat gttacgattt cgccgttttt cagcttttga
      481 aaaaccggtc ccgcttcgac gccgtccgct tttaattttt cagcattgag tgcaccttgt
      541 ttatcttttt cgacaatacg gtaaccaaag ctacgtacgc catgatcaag atcgtcagct
      601 gtaactaaaa acatttcatc ttcaaaaatc aaacctggct ctatttcttc aaaattaatt
      661 ttatatgtaa gccttgttcc actgagtctt aaggaagttt cgacatattc tgctattccg
      721 gcaggaccgt aaatagtcaa attagagtcc cctccttgaa aagaacgact acttaataag
      781 cctggcagtc caaaaatgtg atctccgtgc atgtgagtaa taaagatttt ttctagttta
      841 ctaagtttaa tttggcttcg catgatttgg tgttgtgttg cctctccgca atcaaatagc
      901 caaattgtat ttcgttcatt taacattgaa agtgcgatgg atgtgacatt acggcctcgc
      961 gacggtacgc ctgctccagt tcctagaaaa acaagttcca taatctgttt cattcccttc
     1021 ccagttcgtg tcttatttta tcatattctt aaacgaacag gaaataaaca tttctaagaa
     1081 aaaaccctta taattcagaa ataactgtca aattaaaaaa atattcaaac caaacagttg
     1141 cacaaatgct tctttatgga taaaatagta tggactaatg aggaaaatta atagctcatt
     1201 taataaggcc tttttttgtg gggttctttt caaactaaga aatctttttc ttagcagtta
     1261 atttttgcca ttaagagaat aagaaagagg gtaaatgacg tatgacagat gagttagaac
     1321 aaaaagcact gattactatt tttggcggta cgggagattt ggcaaatcgc aaactttacc
     1381 cttcgctata tcatttgtac agtaagggat ctcttggcga caattttgct gttattggaa
     1441 cggctcgtcg tgaatggagt aacgatttct tccgtgataa agtaaaagag tctatcaaag
     1501 acattgacgg ttccgaaaaa gacgcggatg catttgcttc tcacttctac tatcaatctc
     1561 atgatgtgac aaataaagaa tcttatgtaa ctttaaaaga tttgtctgat gaattagatg
     1621 caaaatacga attaggtggc aatcgcctct tctatcttgc aatggcgccg aatttctttg
     1681 gaactatcgc aagtcgcatt aaatctgaag gatttgtaga tacagatggc tttcatcgtt
     1741 taattatcga aaaaccattt ggtcacgatt tagctagtgc agaagaatta aataattcgc
     1801 ttcgtcaagc atttaaagaa gatgaaattt atcgtattga ccattattta ggaaaagaaa
     1861 tgatccaaaa tatctcggtt attcgttttg caaattctat cattgaatcg ctttggaata
     1921 atcgttacat cgataacatc caagttactt taactgaggt gcttggggtt gaagatcgtg
     1981 ggcgctatta cgatgaaagt ggcgcgcttc gagacatggt tcaaaaccat attctccaaa
     2041 tcgtttctct acttgcgatg gagccaccaa ttaacttaac gacacgcgag attcgtcatg
     2101 aaaaagttcg cgcgcttcgt tccttacgcg tttttgaagg taaagaagtt caccaaaact
     2161 ttattcgtgg tcagtacggt cctggtgaag taggtggcaa agaactcaaa ggctatcgtc
     2221 aagaagataa tgtggatcct cattccaata cggaaacatt tgttgcagcc aaactagaaa
     2281 tcgataactt ccgctgggct ggcgttccat tttatattcg cacgggtaaa cgtcttgcga
     2341 agaaaacgac ccaaattgcg attcagttca aagatgtacc gctgaattta tttggtcaac
     2401 aacaatcgct tggtggtaat gtgcttgtta ttcatatcca accggacgaa ggtattacac
     2461 ttcatttgaa cgtcaaagaa cctggtcaag gtatggttac aatgccagtc aacttaaatt
     2521 atattcattc ctctccagac ggcatgaaca cacctgaggc ttacgaaaaa ttgattctag
     2581 actgtcttcg cggtgatgcg acttacttct ctcactggga tgaagtatca ctatcatgga
     2641 actttattga ccatatagca gatgtttgga caaatacgaa agatcatttc ccgaactaca
     2701 aatccggttc gatggggcct aaagaagcag atgacctcat tcaacgcgac ggattccagt
     2761 ggttcccaat cgattaatca aaaaaccaga aatatggcta ccctagccta tttctggttt
     2821 tctttgttta cttgcaaaaa cccctatgca tgttagaata gagaggaaaa ctaactagtt
     2881 aaaggagctc atataatggc tgaaaatatt gatgactact tagaaaaagg catgtatggg
     2941 gcaaaagaga ttaatcccgc tgagaagaaa aaatatttag gaacttatcg cgaacgtgtt
     3001 ttagttgcac tcacaaaaga ggaagttttg acccaagagt atcttccaga actagaaaaa
     3061 gcaatactag aaaacagtga ctccaagctt cttttaaacg gattactcca ttataattct
     3121 ttacgccctt atattaaact agcagaaaaa tgtaaacatg aattttcgat tgttactcgt
     3181 ttagaaggtg aaacagatat ttacctcgtc ctcgcctgtc aaaaagcggt aaacaaggaa
     3241 gacattcatt tatataaaga agcagaagta gaacaagaag aagaacctgt ctcgttactt
     3301 gagaaggttc gtaaactgtt taattaagtt taccgcttac tatttaggag gtcgatttat
     3361 gctacacatt atcactctgt cactcgctat tttgatggcg ttacaaacga tttatttctt
     3421 catccgtaaa aatgttaata tgggcgttat gtttttgctc ataactgctg cacttctttt
     3481 actcagtacg atttaatgga attcctgttt cgatagcttg ctttaaattt cgctgcatga
     3541 caccaattcc tgatgccccg tcaagtggga aattaaatac ttgcttacca tccgtgatgc
     3601 tcgtcaataa ccctctgaac tttttgccgc ctaacatcgg aattggttcg gtagggttta
     3661 tttgtagttt ctgccactgc tcctttaatt cctcgagttg aatcgtatca gcactagtcc
     3721 ctttcatggt gaagcggaca tcatatgttt ttgaaataat atcgtccggt cgcaaaaaac
     3781 catatttggg ggataatatt aaatattcat ttgcaaactg ttccgcatag gctctactta
     3841 aacgatgaaa tgttccagta tacacttcgc ttgcttttac tggaccaata tctggcgact
     3901 tatcccatat ttttggtttt ccagatgcaa taataatcag gttcgtttta ttggatattc
     3961 ccacatcatc actcttcctt gtttctcttc tgtatctttt tctttgatat gtacgaaatg
     4021 gttgtgtttt agtacttgta tggatgccat gttctgctcg tagcttctgg caaatatgcg
     4081 atgaatggcg ggctgttctt ctagccaagc aatcatacct ataagcgctt ctgacatata
     4141 acctttattt tgataatctg gtacgatgct gtagccaatt tcgatttcgc ccgtttcgtc
     4201 cggatttcct tgtccaccaa tttcgccgat aattttattt tcttctttta aaacgactag
     4261 gcgtgtccat ttaatcattc tatcgtcttt tttcacgttt tctaatacat atggtaaata
     4321 aaaaaagaaa tcaattcctg gccagtcagg tgacacatgg tagccacttg ctttttccaa
     4381 agcttctgtc ccattaatcg ttgcctgaat catttctagt gtgtaattaa ttaatattaa
     4441 tcgatctgtc tctaaattat ccacaacaat aacccggctt tcctactaat ttattacttt
     4501 caatttagca gaattagata gaagaacgca actaatgtgt gattttttat ccgaattatt
     4561 aaataaataa tagaaaacta taaaaataaa actattctga ctatatactt gacctttcat
     4621 ttttgaatgc gcttccattt aagttatact tcaaatataa gacctggtac taatttcagc
     4681 taaaagtgta agttgcttga attgtgcaaa ctgacggaaa actttcaaaa taacaattga
     4741 caatcgcatg gcaaccatat atattaaata ctaacataac atttcttgat attaattttt
     4801 ttcaaaaatg tgcgactaat cgaaaaaata aaaccattta acgaagggga taatgactta
     4861 tgaaaacgac caaatcagtc attacaattt tattactcta gaaggacttt gagcactgta
     4921 gaaatttaca gtagtttgag tcctgtttac gttaaatggg attctagcaa agcatcccat
     4981 tgttttcatc attggggtgc tttttcttta gctagatttc gagttttcaa gcatcgagaa
     5041 gccattatca agcaagcagc tacttaatca tatatattaa tgccacgcta tttagtgaat
     5101 tctaaaaatt cagtgtcggc aaataattct taattagaaa tggggtaaag tcatatgcgt
     5161 agtgacaaaa taaaaaaagg tgtcgaacaa gctccagcaa gaagtttgct gcatgctaca
     5221 ggtcaaatta aaagtccagg tgatatggat aaaccattta tcgctatttg taactcttac
     5281 attgatatcg ttcctggtca tgttcatttg cgagaattag cggatgtggc taaagaagct
     5341 attagagaag ctggcggtat cccatttgaa tttaatacga ttggtgtaga tgacggcatt
     5401 gcgatgggac atatcggtat gcgctattcc cttccctctc gtgaagttat cgcggatgca
     5461 gcggaaacgg taatcaatgc gcactggttt gatggggttt tctacatccc aaactgtgac
     5521 aaaatcacgc ctggaatgct tctcgcttct gttcgtacaa atgtacctgc tatcttctgt
     5581 tctggtggcc caatgaaagc tggattatct gcacacggaa aagcactcac tctctcttct
     5641 gtttttgaag cggttggcgc atttaaagat ggcagcatgt cgcaggaaga ttttcttgat
     5701 atggaagcta atgcgtgtcc gacttgcgga tcttgcgcag gaatgtttac agcaaactca
     5761 atgaattgtt tgatggaaat cctaggtatg gctgttccgg gaaatggtac aacacttgct
     5821 gtttctgacg cacgccgtga tcttattaga gaatctgctt ttcatttaat ggatttagtt
     5881 aaaaaagata ttcgtcctcg tgacattatt acaaaagatg cgattgacga tgcttttgcg
     5941 ctagatatgg caatgggtgg ttcgacaaat accgtattac atacacttgc acttgcaaac
     6001 gaagctggta ttgaagatta tgatttggaa cgtatcaatg atattgctaa acgtgttccc
     6061 tacctttcca aaattgcacc ttcctcttct tactcaatgc atgatgttca cgaagctggc
     6121 ggtgtttcag ccattgttaa agaactggtt gatctaggtg gcgcaataca tccagacaga
     6181 atcactgtta ctggtaaaac gattcgcgaa aacgtagctg atgcaaaaat taataatacc
     6241 gatgttattc atccaaaaga aaatccgtac agcccagttg gcggactttc gatgttgttt
     6301 ggtaacatcg caccaaaagg agctgctatc aaagttggtg gcgtagatcc ttccgtacaa
     6361 gttttcaaag gagaagcgat ttgctttagt tctcatgatg aggcggtgga agcaattgat
     6421 aaccataccg tccgcgaggg gcatgtcgtg gtcattcgct acgaaggtcc taaaggcggt
     6481 ccgggaatgc ctgaaatgct tgcgccaaca tctagtattg ttggtcgagg tttaggaaaa
     6541 gatgttgctt tgattacaga tggtcgcttt tctggggcta ctcgtggtat cgcagttggc
     6601 cacatttctc cagaagctgc agctggtggt cctatcgccc ttgttcatga cggcgatatc
     6661 atcacgattg atttgccaaa ccggacgtta aacgtggatg tttctgatga ggttttggaa
     6721 gaacgaagaa aagaattacc gaaatttaaa gctaaagtaa aaactggtta ccttgcaaga
     6781 tatactgcgc ttgtaactag cgcccacact ggtggcattt tgcaaattcc agaagattta
     6841 atcgactaaa aaatgaggtg ataagcgtga ttgatacgac gaagacaaat gaaaaagcga
     6901 caaaaaagca aaataaaagt ggtgcggaac ttttaattga ctccttgaaa aagcaacaag
     6961 tcgagatgat ttttggctat ccgggtggtg cggttctccc tctctacgat gctttttacg
     7021 actgtgatat tccgcatatt ctaacaagac acgagcaagg agcgattcat gctgcggaag
     7081 gttatgcacg tgttactggg aaacccggtg tggtagttgt aacaagtgga cctggggcga
     7141 caaatgtatt aactggtatt gcggatgcaa tgagtgattc gattccatta gtgattttca
     7201 ccggacaagt tcatacgcct ggtatcggaa aagatgcctt ccaagaagcc gatatgattg
     7261 ggctaaccat tccaattact aaatataatt accaagtgcg tgatgttcgt gacttaccaa
     7321 aaattgtcaa tgaagctttt catattgcaa gtactggtcg taaaggtcct gttgtcgtgg
     7381 atattccaaa agacatgggg attatccaaa cagagtctgt acgaccagat acgatagatc
     7441 tgccgggtta tcaaccgact tattcaccaa acccacttca actggaaaaa ctaatgcaat
     7501 ctctttctgc cgcaagcaag ccactaatac ttgccggagc tggcgtcaat catgcgagag
     7561 ctacagctga attactagaa ttcgctgaac gctatcaaat tccaatcgtg aatacgctgc
     7621 ttggtctagg aagtttcccg caaagtcatg atttgttcct tggtatgggc ggcatgcacg
     7681 gttcatacgc ggcaaacatg gcacttacag attgcgattt gctcattaat tttggttccc
     7741 gcttcgatga caggcttgcc agtgcgccaa aagaatttgc cacaaaagca acgattgcac
     7801 atatcgatat tgatcctgct gaaattggca aaattatcga aacacaaatt ccgattgtag
     7861 ctgatattaa cgaaacactt acacaactac tacaaatgga acttccggtt catcctgata
     7921 catcccattg gtacaaatta aatatgaccc gtaaaaaccg tcatcctttt aattttgata
     7981 gaacgaaaaa agcagaaatt aaaccacagc gtgtgattga gctaattggt gaaattacgc
     8041 aaggtgaagc gcttgtttct accgatgttg gccagcatca aatgtgggcg gcacagtttt
     8101 atccattcca atttgatcat caaattatta cgagtggcgg gcttggcaca atgggctttg
     8161 gctttccagc agctgttggt gcgcaacttg ctttcccaga taaaacggta gtcgccattg
     8221 ttggggacgg tggtttccaa atgaccaatc aagaactagc gattttaaat gattaccaaa
     8281 tcaatgtgaa aacggtcatt atcaataacg gttcgctcgg catggttcgt cagtggcaag
     8341 aaaaattcca cggcgaaaga tattctcatt cgattttcac gagccaacca gattttgtta
     8401 aactagctga agcttacggt gtcaaagggg ttcgcttgac gaatcctgaa acgctagaaa
     8461 aagatctaag aaaagccttc gctcaccctg gaccgattgt cattgacgtt catgtggcca
     8521 aagatgagct agtacttcca atggttccaa gcggcaaacc aaatcaccaa atggaaggag
     8581 tggaataaat gcgccgaatc attaccgcta cagtaaacaa ctcttctggc gtgttaaatc
     8641 gtatcactgg ggttatctcc agacgccaat acaatattga tagcatctct gtcggctgga
     8701 ccgaaatccc aaatgtttct cggattacca tcgtcgtcca tgtcgattcc ttatacgaaa
     8761 tcgagcaagt aactaaacaa ctcaataaac aaatcgatgt gctcaaagtg agcgatatta
     8821 ctgacgatgc gcacatcgaa cgcgaactag ctttacttaa aatcaactcc cctgctgcct
     8881 tacgatctga gctaaacgca gtcatcgaac catttcgcgc cactgtcatt gatgtcggca
     8941 cgaaaaatgt cgtcattcaa gtaactggaa caagtgaaaa aatcgatgct ttcgttgaca
     9001 cagttcgacc gtatggtatt aagcaaatgg cgaggaccgg cgtcacaggc tttacaagaa
     9061 gccctaaaaa aatgggttaa aaatcattta ctacagagca gtctcttgct ttgctagcat
     9121 cagaacagca catcgctatt ctgaaatata aaaagaaatt agttggaggt taggaaaaat
     9181 gacaaaagtt tattatgaag atgcagtaaa aaacaacgca ctagaaggta aaacagtagc
     9241 agtaatcggg tacggttcgc aaggtcacgc acattctcaa aatctacgtg acaatggcaa
     9301 taacgttatt atcggcattc gcgaaggaaa atctgccgaa tctgctagaa acgatggctt
     9361 tgatgtttat tctgttagcg aagccgctga aaaagcagac gttatcatga ttcttttgcc
     9421 agatgaaacg caaggtgaaa catacgaaaa cgaaattaaa cctaacctaa aagctggcaa
     9481 tgcgcttgtt ttcgcacatg gtttcaacat tcattttgac gtaattaatc ctccaaacga
     9541 tgtggatgtt ttcctagtag ctccaaaagg tcctggtcac ttagttcgcc gtacatttgt
     9601 tgaaggtggc gcggttcctt ccctattcgc tatctatcaa gatgccactg gaaacgcacg
     9661 cgacacagcc ctttcctatg caaaaggtat tggcgcaact cgtgctggcg ttatcgaaac
     9721 cactttcaaa gaagaaaccg aaaccgatct atttggcgaa caagcagttc tttgtggggg
     9781 tgcaactcac cttatccaag ctggttttga aacacttgta gaggctggct accaaccaga
     9841 acttgcttat tttgaagtat tacacgaaat gaaactaatt gttgatttga tgtatgaagg
     9901 cggcatggaa aaaatgcgcc actcaatctc caatacagct gaatatggtg attatgtttc
     9961 cggtcctcgt gttgttacag ctgatacgaa aaaagcaatg aaagaagtac ttaccgacat
    10021 tcaaaatggt aactttgcta aatcattcat tgacgacaat aaaaatggtt ttaaagaatt
    10081 ccatagaatg cgcaaagaac aacaaggtca tcaaatcgaa aaagttggtg ctgaacttcg
    10141 tgaaatgatg ccgtttgtta aaccacaaca ttaatactta attcggattg ctaggtgaga
    10201 tttcttgcct agcaaccgtt atcctttttc aatatgagtt taaggaagaa cctttttctt
    10261 tcctaaactg atactgaaag caggaaaaat ccaagcttcc ctatctaata taaaacaaga
    10321 ggtgaaatcg aatgaagaaa atccagtttt ttgatactac acttagagat ggcgaacaaa
    10381 cccctggagt taattttgac gtaaaggaga aaatccagat tgccttacaa ctcgaaaaac
    10441 ttggaattga tgtgattgaa gccggctttc cgatttcttc tcctggagat tttgaatgcg
    10501 ttaaggcgat tgcaaaagcg attaaacatt gttctgtaac agggctagcg cgctgtgttg
    10561 aaggagatat tgaccgtgcc gaggaagcgc taaaagacgc tgtttctccg caaatacata
    10621 tcttccttgc aacgagcgat gtgcatatgg aatacaaatt aaaaatgagt cgggcggaag
    10681 ttcttgcttc cattaaacac cacattagtt atgcgagaca aaaatttgat gttgtacagt
    10741 tttcaccaga agatgcaact cggtcagatc gtgcttttct gattgaagca gttcaaacag
    10801 cgattgatgc aggagcaact gtcatcaaca ttccagatac ggtcggatat acaaacccca
    10861 ccgaatttgg gcaattattc caagatttgc gccgcgaaat aaagcaattt gatgatatta
    10921 ttttcgcttc tcattgccat gatgaccttg gtatggcgac agcaaacgca cttgctgcaa
    10981 tcgaaaatgg cgcaagacgc gtcgaaggta cgattaatgg gattggtgag cgtgctggga
    11041 atacggcact ggaagaagtt gcggtagcgc ttcatattcg caaagatttt tatcaagctg
    11101 aaacaaacat tgtattgaat caatttaaaa attcaagtga tttgattagc cgcttgtctg
    11161 gtatgcctgt tccacgtaac aaagctgtaa ttggtggcaa tgcttacgcg catgaatctg
    11221 gtattcatca agatggtgtc ctaaaaaatc ctgatacgta tgaaatcatc acccctgctc
    11281 ttgtcggcgt ggataaaaac tctcttccac ttggcaaact ttctggcaaa catgccttca
    11341 atacgcgcat ggaagaaatg ggctacacac taaccgaaca agaacaaaaa gatgccttta
    11401 aacgtttcaa acaattagca gatgcgaaaa aagaagtaac agaagaagac ttgcacgcgt
    11461 taattctcgg acaatcttcc gaatcagccg atgatttcga actaaaacat ttgcaagttc
    11521 aatatgttac tggcggcgtc caaggtgcga ttgttcgcat tgaagaacgt gatggcgctc
    11581 tagtagaaga cgcagcaact ggttcaggta gcattgaagc gatttataat acgattaacc
    11641 gtcttatgaa acaagatatt gaattaaccg attatcgtat ccaagcaatt acagccggtc
    11701 aagatgccca agcagaagtc catgtcgtca ttaaaaatga caaaggcgct gtgttccatg
    11761 gtatcggtat tgattttgac gttttaactg ctagtgctaa agcttatttg caagcatcag
    11821 gcaaaagcaa aaccgccagt aagcaagctg atttcgagga ggtaaaataa cgtgacctat
    11881 aaaattactt ccttagctgg cgacggaatt ggtccagaaa ttatgacttc tggacttcaa
    11941 gtattagagg cagtcgcaaa aaaatacaac catacgtttg aaattgaatc tcatcccttt
    12001 ggcggcgcag gaattgacgt agcacaagac ccaatccctt cttccacctt aaaagcgtgc
    12061 cgagacgccg acgccatttt actcggagca attggtggtc caaaatggga taatgcgccg
    12121 aaacgtcccg aagatggcct acttgcactt cgaaaagcgc ttggtctttt cgccaacatt
    12181 cgacctatcc aagtcccaag ctccatcacg cacctttctc ctttaaaaaa ggaaattgtt
    12241 gagaacactg attttgtcgt tgttcgtgaa ttgactggtg gactttattt cggagaaccg
    12301 aaatattggg ataatgaggc agcagtggat tcattaacat atacccgtgc agaaatcgag
    12361 cgaattatcg agaaagcttt cgaaatcgcc gctactagga ataaaaaagt tacttcagta
    12421 gataaagcga atgtgcttgc ttctagtaaa ttatggcgaa aaatcgctga tgaagtcgca
    12481 agtcgtcacc cagatatcac actagaacat ctatacgtcg acgctgccgc aatgcttatg
    12541 attcagcgac caacgacctt tgatgttatc gtgacagaaa acttatttgg cgatatttta
    12601 agtgatgaag cgtctgttat tactggctcg cttggaatgc tcccttctgc tagccacgcg
    12661 gaaaacggac catctttata cgaaccaatt cacggatctg cgccagatat cgctaaccaa
    12721 aatatcgcga atccaatgtc gatgatatcc tctgtatcca tgatgcttcg tcaatctttc
    12781 tctctttttg aagaagcaga tgcgactgat gcagctacag caagaacgat gcaagctgga
    12841 tttttaactg ctgacctcgg aggcaatact tccacaactg attttacaaa tgaagttcta
    12901 aaacaaattg aaggaggaga ataaaatggg gaaaacactt tttgataaac tttggaatcg
    12961 ccatgtcatt tatggcaaag aaggtgaacc gcaattatta tacgttgacc ttcatttgat
    13021 tcatgaagtt acttctcctc aagcgtttga aggacttaga atggaaaatc ggccactgcg
    13081 tagaccagat aaaacgttcg cgacaatgga tcataacgtt ccaactgaag atattttcaa
    13141 cattcaagac cttgttgcta aaaaacaaat cgaagcactg caaaccaatt gcgaggaatt
    13201 tggcgtgacg ctagctgata tgggtagtga tcgccaagga atcgtgcata tggttggacc
    13261 agaaactggg ctaacacaac ctggaaaagt cattgtatgt ggagattcgc atactgcaac
    13321 tcatggagca tttggagcaa ttggctttgg gattggttct agtgaagtag agcatgtttt
    13381 tgcgactcaa accatttggc aacaaaagcc aaaatcaatg ggcatagaaa ttaacggcaa
    13441 tcttccaaaa ggtgtctatg caaaagatat tattttgcat ctgattgcca cgtatggcgt
    13501 cgcttttgga actggctatg ccgttgagta ttacggcgaa actattcgca atatgtcgat
    13561 ggaagaacgg atgacgattt gtaatatggc aattgaaggt ggcgcaaaga tgggcatgat
    13621 ggcgccagat gaaactactt ttgaatatgt gcgcggtcgt gaatacgctc ccgctgatat
    13681 ggataaagca attagtgact ggaaaacgct ccaaacagat ccagatgccg aatatgacct
    13741 tcatatcaaa atggatgcga gcattttgga accgtatgtc acttggggaa cgaatcccga
    13801 aatgggagtg ccattttcta aagcatttcc ggaaattaaa gatatgaact atgagcgtgc
    13861 ttatgaatat atggggctaa aacctggtca aactgcagaa gaaatcgagc ttggctatgt
    13921 gtttattggt tcttgtacaa atgccagact ttctgactta gaagaagctg ctcgtatcgt
    13981 caaaggaaat aaagtgaaaa ataatattcg cgcactcgtg gtccctggtt ctcgccaagt
    14041 gcgtaatgcg gcagaatcta tcggactaga taaaattttt atagaagctg gctttgagtg
    14101 gcgtgaacct ggttgttcga tgtgtctagg aatgaaccct gatcaagtac cagacggcgt
    14161 tcactgtgct tctacttcga accgaaattt tgaaggtcgt caaggtaaag gcgctcgtac
    14221 tcatcttgtt tcaccagcaa tggctgctgc tgcggcaatt aacgggcact ttatcgatat
    14281 tcgaaaggag gcggttatca gtggaggaaa ttaaagtaca cattggaaaa acagtagcgc
    14341 taatgaatga caatattgat accgaccaaa tcattccaaa aagtttctta aaacgcattg
    14401 agcgaacagg ctttggcgaa tttctctttg atagttggcg ctacctgccg aaccgtaaac
    14461 caaacccaga cttcccgctc aatgctccag atcgtcagga agcgactatt ttaattacgg
    14521 gagataactt tggttgcggg tcctccagag aacatgctgc gtgggcacta ctagactacc
    14581 gtttccgtgt aattatcgct ggcagttata gtgatatatt ttatatgaat tgtacaaaaa
    14641 acggcgtgct ccctatcgtt cttcctagag aggcgcgtga aaaattagcg aaaattgcag
    14701 ccgatgaaaa tgtgaccatt gacttgccaa atcaacaagt tatcagttca gttggtacct
    14761 acccgtttga gattgatgct acttggaaaa ataaatttat taatggactg gatgatatcg
    14821 ccattacatt tgaacatatt gatgcgatta aagcctatga acaaaaagtg gattcaatat
    14881 aagaaaaggt agtgaggatg atggaattag ttgatttatt agtaacagaa gaagatgtcg
    14941 aaaaggccta tgaagtctta aaggcggtcg tcaaacatac gccactagaa tatgattttt
    15001 atctttcgga aaaatatcat tgcaatgtct atctgaaacg cgaagatttg caaagagtgc
    15061 gttcttttaa attacgtggt gctttttatg ctatttctag attatcagcg gaacaattgg
    15121 aaaaaggtgt ggtatgtgca agtgcgggaa accatgcgca aggagttgca tatacgtgca
    15181 aacgaatgac cgtcccagct acgattttta tgccaacgac tacgccgcaa caaaaagtat
    15241 cacaagtaaa atttttcggt ggtagtaatg tcgaagtggt tttagttggc gatacgtttg
    15301 atgcttctgc aactgccgcg aaagaatttg ctgcaacgca tggccaaact ttcatccctc
    15361 cgtttgatga tcctgatatt atcgctggcc aaggctctct tgctgtggag atggtgaaag
    15421 atttaaataa agcacatgag caagcagatt atgtttttgc aggaatcggt ggtggtggct
    15481 taattagcgg tgttgcaacg tatctcaaag caaagagccc gattacaaaa atcatcgggg
    15541 tagaacctga tggcgcgcct tcaatgacag cagctttaaa acaaaatcaa gtcgtaacac
    15601 tagataaaat cgataaattt gttgatggcg ctgcggtaaa agaagttggt ggcttaacgt
    15661 tccaacatgc gaaagtatta gttgatgaag tgacaaccgt ctctgaggga gctgtttgtt
    15721 ctacgatttt ggatatgtat acgaagcaag caattgttgc agaacctgct ggagcactat
    15781 ccgttgccgc acttgaaatt taccgtgaag agattaaaga caagaccgtt gtctgtattg
    15841 taagtggcgg aaacaacgac atcaaccgga tgcaagaaat tgaagagcgt tccctcttac
    15901 acgaaggatt aaaacattat tttatcgtca atttctcgca gcgtcctggg gctttgaaag
    15961 aatttgttaa cgatgtgctc ggtccacatg acgatatcac caaattcgaa tatacgaaaa
    16021 aagtgaatcg aggtaatggg cctgtaatta tcggtgtttt gttgcaagat aaaaatgatt
    16081 atgaaggatt gcttgagcgg gttgctgctt ttgacccgag ctatattccg attaatgata
    16141 atcaaaccct atacacatta cttgtataaa aagagttctc gtatgatgcg agaactcttt
    16201 ttatattaca gtttactatc ctgttatagt aacagtttat tttaaaattc ggtttaaaat
    16261 cttttgttta aggatataaa gtagtataat gaacatatag aaattaaact gtattattaa
    16321 aaaataactt ttcatatata acaatgcaag gagtggcaat aatggacaca gttagaaaaa
    16381 atcgattatt tcagcattct acaatggcag cacttgttgg tgggcttttt agcggaacaa
    16441 cgagtttcaa agaattatta caacacggtg acctcggtat aggaacactt gaccaatttg
    16501 atggtgaatt aattatttta gacggagaag cttttcaaat acgatcagac gggcaagctt
    16561 ataaagtaaa gccagaagat acgacacctt atgcgagcac cacttttttt gatgctgata
    16621 cttctttttc cgtttccgaa ccgacatcaa aacaagcggt ggaagaaaaa atcgcagaat
    16681 tagtacaagg accaaatgtt ttttatgcag tgaaaatgac cgggaatttc cgttatgtgg
    16741 atacgcgcgt tgtaccaaaa caacaaaggc cttatccgcc actcattgaa gcggtaaaag
    16801 aacaaccaac gtaccatttt gaatatatta cgggtacaat tgttggtttt tggacgcccg
    16861 cttatattag cggtattggc gtttctggct atcatgtgca ttttattgac gatatgcgta
    16921 aaatcggcgg tcatgtattt gattatgaaa tgctggaagg taccgtagaa gttgcgcaac
    16981 aaacagaatt tgaactacaa ttacctcaaa cgacggaatt cttaagaagt gatttaagta
    17041 cgccggatat gttggaacag attgaagccg cggaaaattg ataaagaaag ctcccaaatt
    17101 aaattgggag ctttctttta ttctgtaata actttatgaa caagggttgg tgctgttgcg
    17161 tggtcggaaa tttgaatgtt ttcgtagatt tttgctttta cgttttcgac atcttcttgg
    17221 tcagcgaaaa tcgttacgag tgattcgcct tccttaacag catcgcccac ttttttgcgt
    17281 agcattaaac ctactgctag attgatttcg tcttccttcg ttgcgcgacc agcgcctagg
    17341 atcattgcag caatgccaat ttcatcggca acgatttgac ttacgaagcc agatgattta
    17401 gcgggtactt cgatttggta ttttgcttgc ggaagttttt ctgggtgatc aacaatgctt
    17461 gcatcgccac cttgattgga aaggaatgtt ttgaatttct caagtgctgc accgttttcg
    17521 attacttcaa ttaatttagc gcgggcttcg tcgagtgttt ccgcttgttt ggctagtacg
    17581 accatttgac taccaagtac aagaactaat tctgttaaat cttctggtcc ttggcctttt
    17641 aatgtatcga tggcttcttt tacttctaaa gcatttccga ttgcttcgcc aagtggttgg
    17701 gacatatcag aaatgactgc catcgtattt ctaccaacgt tattaccgat gcgaaccatt
    17761 gcatgtgcta ggttttcggc atcctcgtcg gttttcataa atgcaccagc acctgttttt
    17821 acatcaagta cgattgcatc tgcgcccgct gcgatttttt tactcataat agagcttgca
    17881 attagtggta ttgagtttac ggttcctgtt acatcacgaa gcgcgtacat ttttttatct
    17941 gctggtgtaa gattacctga ttgaccaata actgctactt tgtcgcgatt tactaggtca
    18001 atgaaatctt tcttatctag ttcgatatgg aagccttcga tagattctag tttatcaatg
    18061 gttcctcctg tatgacctaa gccacggcca gacatctttg caaccggtac gccaactgct
    18121 gctacgagcg gagcaagaac aagtgtcgtc gtatcaccaa caccgccagt actatgttta
    18181 tcgactttga ttccttcaat tgcggatagg tcaatcgtat cgccagagcc aaccattgcc
    18241 attgttaaat ctgcgcgttc ttgatcattc atatcttgga aaaagattgc catggctaga
    18301 gcacttgctt gataatctgg aatttcccca tttgtatagc catcaatgaa aaactgaatt
    18361 tcttctgttg acaaagcttt gccgtccctt ttcttggaaa taatatccac cattctcatt
    18421 tctcttcacc ctttcttttt gtccacttta gcattttatg tacctttatt gagaacggtt
    18481 acacttttta agtaaaccgt tttactaaac aagaacatgt gcttaacatg ctcactataa
    18541 cttactccct tactggttgt caatactttt tgtactacta cggttgatta gtgaaatatc
    18601 gagtaaacga ttctctaatt tctcggttgg attttggaga tttttcagta atagttcggc
    18661 agcaatttcg ccgataccat agattggttg ccgaatggtt gtaagtggcg gtgtcatata
    18721 ttcggaaagt tcaatatcat caaatccgat gacgctaaga tcagtaggaa tatgcaggtt
    18781 tttttcaagt gcggctcggt aggttcccat cgccattaaa tcattggttg caaaaatggc
    18841 actcagattt tcttggagta acttttgcgt cgcaacataa ccgccattca tcgtctgatc
    18901 cccgcttaca atccaagtat cttttacagt aagtttatag tctttcatgc atgccaagta
    18961 accctcgtag cgttcatgta cgttataaaa agatgtatcc gaaataatga ttccgatgcg
    19021 cgtatggcct agtttgatta aatgctcggt cgccatataa ccgcctttga aatcatcaat
    19081 cgcgatattc ccttcttgcc ttggattccg ctgacgatcg agtaaaatat acggagaacg
    19141 cttctcttcc atgcgtttga taacacctga aagcagaata ttagggctgg cgataattaa
    19201 gccatcgaca gcccggtgca ataattcttc tacatataaa tcttcacgtt ctttatcatt
    19261 agaagagtta cagagcataa tcatgtaacc ttctttattc aagtaatctt cggccccttt
    19321 taccatttgt gaaaaaaaag gatccgttac ttccgggaca atcattccga tggtgtttgt
    19381 gtgactaaca atcatatttt tggcgaaaaa gtttggtttg taagacatct cttttgctgt
    19441 tttcagaact ttttcacgag ttaagtcgct aaatcgttcc cctttaccat tcaaaatttg
    19501 agaaatcgtc gtaattgaaa cgcctgtctt ttctgctatt tcgcggatgg ttgcagccat
    19561 ttaaactccc ccagtcagat tatctattct ccttattttg ccacatttaa gaataataat
    19621 aaaggggttt catccaaaat tagtaattat ctggtttggc tggtttttcg ccggaaacaa
    19681 ttgcaacacc tgcgcttgcg ccaatacgag ttgcgcctgc ttcgatcatt ttttctacgt
    19741 cttctttcgt acgaacccca ccagatgctt ttacgccgat gtttggtcct acagttttac
    19801 gcattaaggc gatatcttcg gcagttgcgc cacctgtgga gaatccagtg gatgttttaa
    19861 cgaagtctgt tcccgctttt acagcgattt cacatgcgcg aactttttct tcgtctgtta
    19921 ataggcaagt ttcgataatt acttttacta atgcttttcc tttggcagca tcgactacag
    19981 cgcgaatatc acgttctact agttcgtcgt ctttgtcttt tagtgcgccg atattaataa
    20041 ccatatccac ttcttttgca ccgttttgga tagcatcttt tacttcaaat gcttttactt
    20101 caggggtatt cgctcctagt gggaaaccga taacagtaca tactacggat tctgctccag
    20161 caagttgttc agcggataat tttacccaag ttggatttac gcatacggaa gcaaaaccgt
    20221 attctctcgc ttcttttgtt agtgttaaaa tttgttcttt cgttgtgtct ggttttaaag
    20281 cagtgtgatc gatcattttg gcaattgtca ttttaaaaac tcctttaaaa ttggatttgg
    20341 tttcatcata tcgcactaca gaacatttgt aaactaattg atgaaatttt gttcaagtag
    20401 ttgttttgcg gtaaattggt cggtaataaa atgattggca taaccgcctc gaagtgcgcc
    20461 atgaatcgct tttatttttc gttcaccacc tgcgacaaga atggctgttt ctttttgctt
    20521 taaatcttgc aagtcgatac caatggttcg ttcgtccatt ttctcgtcag cgatttcgcc
    20581 gccaattgtg aaaaatcgcg aacaaatatc gccgactgct ttttctttta agcgagcctt
    20641 ttcttgatcg gaaaaatagc ctaggcggaa aagcagggcc tcatcacgca cggttcctac
    20701 tgtaaaaata gagatattgg cttttttacc aagctcgatg atatttttta tatggcggtc
    20761 cgcttctacc atttgtttag cgagtggatt atcaaggact acaggaagtg gaagtgatac
    20821 tggcgcggtg tcataagccg caccgaataa cgctaatgtt tcggccgcat acgtattgac
    20881 atcagaatga ctcacaccac ctttaagttg gacgactttt atttctgctt ttagcggggc
    20941 tagtttttgg gcaattttgt acatcgttgt tccccaactt acgccaagaa tatcgccatc
    21001 atggataatt tcttctaagt attcagcggc actttggctg atttgcttgg tgatttcgct
    21061 ataatcattt gtttgactga atgcaacggt gacattttta agttggtatt tttcttttaa
    21121 agccacggcc agttctgtta ggttagaaaa tggatcttgg acttcgattt tgacgtatcc
    21181 ttttgttttc gcgttttgga gtaatctgga aacggtcggt ctggatacac ctaggcgtgt
    21241 ggcgatttct tgctgaccta gatccgcctg ataataaagt ctcgcaacct ctacgctgag
    21301 ctgttctttc tgtttatcca tttcatccct ccatcgtttt ctttttagta taacgtaaca
    21361 gcggggatag ttcgagagag aagataaaaa aaagacagcc gcggctgtct ttttcctatt
    21421 aaaagtcttc ttctatttct tcaagcggcg cggcatattc ataaattcct aaccgcccag
    21481 tttcggcaac ttgattcgca agttctttta aggatagcgt ttcacggctg atgaatgctt
    21541 ctaataaaag cggaatattc acgcctgcga caagttctac tgcatcaaaa ttccgaagta
    21601 accgaacgag tacattaaac ggagtcccac cttttaaatc agttagaaat aagatccctt
    21661 ctgttagatc gagtttagct acttcactgg caattttcgc ctgtaaattt tccgcggatt
    21721 cattcacttc aaaaggaaca aaacttgtat tttcttgttt accgcaaatc atttctgcag
    21781 attgaatgag ttcttttgcg gcatttccat gggtacaaac aaaaattgct ttcatttttc
    21841 aaaccgcctt tttaatagtc taactgacga taatatcttc tgatttccat tggatgacag
    21901 ttaatttttt ccacgtgtac gtcaatgcga ttatttactg cgtggataat aaatggtgat
    21961 aacgctcctc tgaatttggc ggaaataccc ggcatatcgt aatcttttgc atcaatgact
    22021 gtataattgg cacagatttg cggaatgaaa ttaactactc gctcgcttaa agaacgctgg
    22081 ctatcttctg tcacataaat ggtaaccggg gtatcgcgtt ctacaatttc aaacatgcca
    22141 tggaaaaact cgtgagactc aattgatttt gttttaatcc agtgttgctc ttcccaataa
    22201 cacattgcgt aagaataggt cgcgccccac tggttcccag caccaacgaa ataatgaatg
    22261 tcgtcttgat gatgttttag cgcaaattct tgaccaaatt tatccgccgc tttttctact
    22321 tcgacaatcc cttcagcaaa atgttgatcc atttcttgat aaaacgcatc gtaatcttca
    22381 aattcgccag ctaaatacat aaaacgatct gctaccatga agaattttaa ttgttcattt
    22441 aacggatagg agattaagtg atctactaaa gtcgcaagtt ctgcttctgc tttatcaata
    22501 aacccaaata ccgttgcgcc aatttcatta cattttttca cagcatctac cacttcttgc
    22561 gtacttccag ttaccgatga aatgactaca agggtatctt tagtaacacg tttattgcct
    22621 gtcgttagaa acacagcagc attttcataa aaagtttcta atgccgtttt ttctttcata
    22681 tgcaccactg cttgcatggc ggacgcgtat gtaccgccaa ttcctagcca gcaaatatta
    22741 ctaaagccgc ggtcatgtat ttggtcaact acttcattaa tttgcgggcg taattttagc
    22801 gctccttcca tgttttctct cactttttgt tcatcaaatt ttagcactat tcattcctac
    22861 tttctttggt taaattttgg atttcgttat ttggtcaaat tctggaaaag cggatacttc
    22921 taaattaatt ccttttttct tggaaatttc aaaggataat aaatgaaccg gaatagtcat
    22981 aaacagcggt gtcagaagtt ctgctgcccg cacaccgagt aataaatcat ctgtcttttc
    23041 cccgcctgca tccgcataaa atgttcggat tttctttaca tggccttgta aaaattgttt
    23101 taatttttct gcgcggtctt ctagtaagcc ttgaggttca aggaagataa tatagtcttg
    23161 ctcggataaa cctatataag gtccgtgcat atattcttct aactccttac caaaagctgt
    23221 aatccggatg gtttctgtta cttttgtttc tccttcgcgc gctacaccat aagcagcgcc
    23281 gtatcctatg aagaaaactc gttccgcttc catcaattcc tgtgtatgcg cgtctaccca
    23341 agctgctgat ttctctacca cttttggtaa attagcggta atttttttca attctgcaat
    23401 ttccgcttga tattcttctt ccaacatttt ctcttgtaaa agggctagct caagcgccat
    23461 taaattcaac atgagaatgg ttgcgctata gccaagcgtg acatatggca tctcttctat
    23521 ccccatcccg agatcaattg cccgcgtact ttctttcgca atcgggcttg ttaagtcgct
    23581 cgttaaagtg aaaacaatgc caccttgacg ctcaatttct tttacgagat gaatagtgga
    23641 ataactgtgc ccaccttgtg atatagcgat gtataaggtg tttttgttta agtgaagcat
    23701 gtaatttcct gcagtagatg gttcttccac atatacggga atggcgagtt tatccgacat
    23761 atataactgc gctgcaaatg ccgcattaga actagaacct gttgcaaaaa taacaattgc
    23821 ttgatagtcc actttctcca tttgaatgac cttttgtaaa agatcttttc gacttcggat
    23881 gatattttca taaacacttt gttccgaccg gatataataa tccatgtttt tcattttttc
    23941 acctacttat tttaataaac ctgtgaacgc tcctaaaatt ccaattcctg cgattaataa
    24001 aagaatccaa tgtgctttta gtcctttttt atctaaccag aaaataaaga aggtgaagcc
    24061 aagtgctagg attcctggga cgataccgtc aaaaacactt tgaatcgtta ctgcatcatc
    24121 accagagcca aatttcattg gcatgttaat gttcaccatc gtggcgacca ttgcaccaac
    24181 tacggccagc ccgataaccg aagcaccata agacagttta tccattaatc cagttttttg
    24241 aattttttcg ataaaattag ctccgatatt gtagccaata aataatccat aataacgagt
    24301 cagaatagct ggaatattga aaataagaag gaacaaaatc ggccctaaca tatttccttg
    24361 aagtgctaag gaagttccaa tacctgtagc gataacgcgt aaagttcccc agaagaacga
    24421 atctccaatc ccactcagcg gtcccattaa cgctactttt atattattga tggagtctgt
    24481 gtcaaaatct ttatctttcg cagattgttc ctccatcgca atcgaaatcc ctagcggaaa
    24541 agtggaaagc cacggtgtta cgttataaaa ttctaaatgc ctttgataag aagaaattcg
    24601 tttatcttta tcatttttaa aaattttgtt taaggctggt agcatggaaa atccataacc
    24661 gagattggat tgtcgttcgt agttccatga ccattccatc gtgaacgagc gccagaaaac
    24721 tttcattaag tctttttttg ttaatacgtc agaactcttc atcttcataa tttatacctc
    24781 catcattcgc aagtgctggc tctgtattcg aattctttgg accattgtca tttttaagcg
    24841 ttgcataacc tgttaaaatt agcgctaaac atgcagcgaa aatcgctacg cctgttacag
    24901 gaacttttaa ataaacagct aatgcgaagc caaatacgaa aaatacggca ttcttcttat
    24961 tgaccattaa tttgagaagt aaagcaaaac catatgctgg cagtaaacct gtcgcaattc
    25021 caagtcctgt tataacgaaa gccgggatgg catcaagtac gttttggatg actgggcttc
    25081 cgactagata ggacgttgcg acaataatac caattggtaa gttgatcgat aaaaatccgc
    25141 cgagcagttg cattcgactg attcctcgtg aattaccctc gagtgcgtat ttatctgctt
    25201 tatgaacaaa gtaaggtaat acgaaaatga agcatagatt tttaacgaca agtacaaggg
    25261 aagcaatcgg aattccaagt gctaatgcta ccgctgtgct ctcgccagtc gaaatcgcaa
    25321 aggctgttcc tagtatactt cctgaaataa tttctggagg aatagatgct ccgatagaaa
    25381 atgatcctac aaaagctaat tccaaagttg ctcccataat aatccccatt tgtacatcac
    25441 ccatgataag tccggcgagt gtacatgtta ccagtggtct tgatagcatc gatgaaccaa
    25501 ataaatattc tccatttgca agcattgctg caagtgcaag caaaatcgct gttccaaact
    25561 gttccataat ttatcccttc tttcgtcttt tatgcttcaa aggttacttt tttctcgtta
    25621 ggcacttgtt gcataaatac atctacattt tctttttgaa gttcttttaa cttcgctact
    25681 tcttcaggtg ttaaattgat tgctttggaa aaattagctg ttccttctcg ttgctttgtt
    25741 ccgcctagat ttaacatcgg gattttacca ttcgtaccat ggattaattt gtaagcgtct
    25801 tcaactgatt cgacaacaat aagcatgttg tatttgtcag tgacgccgga attaatcgct
    25861 tcgatacttt catcgatact tttcatgact agttttgccg cctcgggttt agcaagacgt
    25921 attgccgact tacggaaatc gtccgccgct accccatcat ttgccactaa aattgtattt
    25981 acatctaaag cattaaacca agacacagct acttgtccat gtagtaaacg atggtccact
    26041 cttagaaatt gaatcatttt ttcttcctcc ttcgtattag ttaaaatcaa ctacatattt
    26101 ggtcgactca gcatcttcat aatgatattg gatggcaatt ggcatctcgt tttctgcata
    26161 aaagacacta ctcaatttga aaacaggatc attttcgtct atatgcatat ttttgatttg
    26221 ctcattccca gctaaaataa gttgaagttc ctgctcaagc tcaaataatt tatatttacc
    26281 tgaattaaca agctcaataa tattaataat ttgaaaatcc tttgcttgta aatcagggta
    26341 taaacttaac ggtaaaatta agcgatctag tgtgacacca tgctcacttt tttggacaaa
    26401 cttgatagaa tacacaagtt cattctcttt tataccaaac ttctctgcgt aaaattttcc
    26461 agctttacgg atgtaaaagt ctttaatatc tttttttaga ttttcattgg tatcggtttt
    26521 cataacacct gtcatttcta aaatgttctg agctgttagt tttggttgaa cgtatagccc
    26581 aacaccgttt ttacgaacaa ctaaaccttc ttcgactaat aaatctaccg cgcggcgaat
    26641 cgttgtccga ctgctagaaa aaatttcttg caaggctgtt tcgttcggca ttagcattcc
    26701 cggcttatat tcatcgcgat taatactatc ttttatttct gaagctatta cttcaaaaag
    26761 tggcttttta gctcccattt cactcatcct ccaagtaatc aaatatgttt ttcgcattga
    26821 ttttgtattt gatttgatta ccaattagat attgtttact gtactcaaaa ggttcatcat
    26881 tttgatcaaa tgctttactt actacttcaa aaagtggcgt gtttagtggt acctttaatg
    26941 cttctgctag cttttcattc gctgatacaa agcgcaattc ttcgcgcccg taggtaggtt
    27001 taatagcaaa ctgcttttct aacacattgt ataacgagga attatttaaa tcgattttct
    27061 caataccagc aaatctcgtg ctatcaataa aagatatttc ataggaaaac ggcttattat
    27121 caactattct tcgccgaacc aatttaaaca ccggcttatc ttcacttaag tttaaaaagt
    27181 ggttcacctc gtctttgccg gctactattt cttgtgacat tacttctact ttttgttctc
    27241 ccggcaattg gctgctcatg gaattcattt gcaaaatatt gattgtttgc ttttgattga
    27301 tttcgattcc ttttcggttt cttttttgga tgaccgcttc tttttcaagg gtatcaagtg
    27361 accgtctgag tgtagttcta ctgacaccta gttcgttttc aagcgcacgt tctgatggga
    27421 aacttgtttc tccggctgct actttttctt ggataagctg tcttagttgt tcttcacttt
    27481 gcactgctgg cgacaagtct ttatattcca tatttccacc tcttttttca aatcatctat
    27541 ctatttcact ttttaaaaag atacagcttc aaacattttt aataccactt cattgtaaac
    27601 ggttgcattt tgtttgtcaa tagtcttttt acataaaaaa aagcatgagt cagatttttc
    27661 catccaactc atgctccatt tgattattta gttgtaggta gtgctccaac tactgggtgc
    27721 gggatatata attcttctag atagttaact tccgctgccg ttaattgaat atttagcgcc
    27781 tctaccgcgc tttccagatg actttctttt tgtgcaccga tgattggcga agtgatttca
    27841 tctttattta atagccacgc taaagcaatc ttatctcgag atacttgatg tgtttccgca
    27901 agttcagcca cacgttcaat aatacctcta tctgcattca tcatgtcatc gtatttggat
    27961 ttttgaactg gatccgtttc ggaacgattg gttgtttcat tcaaatctcg cgttaatcgt
    28021 cctgatgcta gcgggctgta tggcgtaatc gcaatttttt catcgcgaca aaatggaatc
    28081 atttctcgct cttcttcccg gtaaatcata ttgtaatgat tttgcatgga aacgaatttt
    28141 gtccaaccgt ttctttctgc gacgcgttgt gctttttgaa actgccaagc atacatagca
    28201 ctcgctccaa tgtaacgcgc tttcccggac ttaacgacat cgtgtaaagc ttccatcgtt
    28261 tcttcgattg gcgtattttc atcaaaacgg tgaatgatat ataaatctac ataatccgtt
    28321 tctagtcgtt ttaagctatg gtcgatttcg ctcaaaatgg ttttcctgga taagccacca
    28381 ctattcgggc gatccgggcg cattgtttgt tgcaccttgg ttgctaacac aacatcatcg
    28441 cggttagcat agtcttttag tgcacgtcca acgatttttt cactttcacc gtaagaataa
    28501 atattcgccg tatcaaagaa atttatgcct aaatcgagtg ctttttttat gatagggcga
    28561 ctgttcgctt cgttcaaaac ccatttatga atccatttgt ctttatcacc gaaccccatt
    28621 gtccctaaac agattttcga aacatccatg ccagtgttgc caaatttaac atattccatt
    28681 caaaaccctc ctagttaatt tctagtacta ttacagcata aaccttgaag tccactccaa
    28741 gtcaaccttt aactataaaa aaatctctcg ggaaatccga gagattttta acgttttaat
    28801 aaaattggtc aggtagtaaa gtttcgccga gtttgatgtt atcacggtaa tcaattggaa
    28861 tatctacaac gacgggacct tctgtttcaa gggcttcttt taacacatca ctaagttctg
    28921 acggtttagt tacgcgaagt ccttttgcac cgaagctttc ggcgaattta acaatatcga
    28981 catcaccaaa acgaactgct gcttctttgc cgtatttcat tttttgttgg aaggcgacca
    29041 tgtcatagct accgtcattc catacaaggt gcacaagtgg cgcacgcaag cggacagctg
    29101 tttctaattc catggcagaa aataggaagc caccgtcacc agaaatcgaa accacttttt
    29161 cacccggatg tacgagtgtt gcagcaatcc cccaaggaag cgcgacacca agcgtttgca
    29221 taccgttact gaaaagcaga cggcgtggtt cataggaccg gaaatgacgt gccatccaaa
    29281 tataatgtga accaacgtcg actgtcacag ttacgttgtc atcaattgcc gaacgcagcg
    29341 tttgaatgac cgacaacgga tgtactcggt tagtttcatc actttctggt ggaacatctc
    29401 gttcttctaa ttgagcatga agttctttta aggtttcaag ttctttttcc gctaattcta
    29461 aaccgctgaa tttcgcattc actcggtcta aagtaagcgc gatgtttccg actaattccg
    29521 tcacaggttg atagtagtgg tcaatatctg ctcggatgtc atctaaatgt acaatcgttc
    29581 tatcacccga agcattccag gcttttggat catattcaat tggatcgtaa cctactgtaa
    29641 taactaaatc agctttattt agcaaaatat cccctggttg gttgcggaag agacctacac
    29701 gcccaaagaa attatcttct aaatcacgtg agatgacacc agctgcttgg aaggtttcta
    29761 caactgggat gcttgttttt tggagtaggc gacgaatcgc accagttact tccgggctag
    29821 atgctcgcat acctaatagc aatactggta atttcgcttt tttcaaacga gcaacgagtt
    29881 tcgcaacttg ttctttggaa gctggaccat tttctggttt agcaagtggg cgaatcgctt
    29941 ttactggtac gtttggttca ttcacgatat cttgtggcaa actgacaaaa gcagcgcctt
    30001 ggtttggttc tgccgccgaa cgaaaagcgt tagtgattgc ttccgggata ctttcagcgt
    30061 gaactacttc ttcgctatat tttgtaattg gacggaaaag tgctgcatta tccattgatt
    30121 gatgtgtttt tttaaggcgg tcttgcctgg ttacatttcc agctatcgca acgactggat
    30181 ctccttcagc agttgctgtt acaagtccag tggcaaggtt cgatgcgccg ggtccactag
    30241 ttacaagtac aacaccaggt tttccggtta gacgaccgat agcggcagcc ataaacgccg
    30301 cattttgctc atgacgactg acaattaatt ctggtccacg ttcttccatc acatcgaaaa
    30361 ctttatcaat ttttgctcct ggaatcccga atacatgcgt aacaccttga ttaattaagc
    30421 tgtctacaac taaatccgct cctgattttc cttgtgttat tactttttct tggtcttttt
    30481 ctagtttcgc catcgttatc atccttttgt tatataaatt atttaaattt taatagtaca
    30541 gatttt
//
LOCUS       DASEAA010000014        30384 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.014, whole genome shotgun sequence.
ACCESSION   DASEAA010000014 DASEAA010000000
VERSION     DASEAA010000014.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 30384)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 30384)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..30384
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.014"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..661
                     /locus_tag="U0342_000529"
     CDS             <1..661
                     /locus_tag="U0342_000529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421891.1"
                     /translation="RALKRYFLILNLRKEMIDANYRDERHVTERVVQMPTIKVEFDNK
                     EMTSGKLIVRDSLEFHDRLAKATFTPSLKGFKVEDFYLSDDGDWWIYNFYSVNSQIQA
                     VFDSLEEYLNWSNETTNKFQLRIDNRLSFDLKHTLLVGATRSGKTYGLIGLLLQMINK
                     LIHYELFFADPKNDQLRKIGNWINGKNTAYTTENIIDLIDSYNNGEKDPVSLWKRTQL
                     Q"
     gene            922..1394
                     /locus_tag="U0342_000530"
                     /pseudo
     CDS             922..1394
                     /locus_tag="U0342_000530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002305065.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            1387..1554
                     /locus_tag="U0342_000531"
     CDS             1387..1554
                     /locus_tag="U0342_000531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HEM2421892.1"
                     /translation="MINDEKKFKKNQSKIRDVSSNFNAQTIYIGKRGENIDAMLRIYD
                     KKAEQLGSSKR"
     gene            1551..2057
                     /locus_tag="U0342_000532"
     CDS             1551..2057
                     /locus_tag="U0342_000532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation factor domain-containing
                     protein"
                     /protein_id="HEM2421893.1"
                     /translation="MTHLRHEAEKLDDWVRYEAEYKGRYAHQLTDAIENCKSDEELKN
                     IIVSSILDRYGFYYTKESKKGKINRPTIETKKMLDLLNNNDFKFDSPSPRNNMLNQTI
                     NYIQKNSGLFPLLWKVDGIWGDGTYKELLEWLGDQYYNSFEPNDDHISWLNKYKALYQ
                     LEGKPWEG"
     gene            2065..2262
                     /locus_tag="U0342_000533"
     CDS             2065..2262
                     /locus_tag="U0342_000533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421894.1"
                     /translation="MNKPQVRSNINHIIKMADSVLKDENTINKRTSDSDYQKHIYTPE
                     AILANIKDSAESALKALNEYE"
     gene            2582..3622
                     /locus_tag="U0342_000534"
     CDS             2582..3622
                     /locus_tag="U0342_000534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002406008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2421895.1"
                     /translation="MASIVKRGKSYRAQVSLYKHGQHKKISQTFSTKKEENLWALEME
                     LAKGEGKELAHRTTTFADFFENWIYLVKVNDVKETTFQNYVRTLGIIRNLFQDIQLKD
                     LNDIVVQKKVDEYAKTHSRKTTHEVLLKIKTSLRDAYARGYIANDFARLVKTRGEKPP
                     KRNKALSITDFRKLRNYVLQHPEDEFNLLVLLALETGMQRGELLAIRPESLYEYGIKV
                     RHSISPTSDDTSLKTLNAKRDVSINKEVYELIRKIPVKEDGYIFSFGGFKQSEQLAEL
                     LKKLDIKKTTFHGLRDTHASFLFAQDIDIAYVSKRLGHINIQTTQNYYLELMPEKKHQ
                     QDADALNLLSAL"
     gene            complement(3691..4083)
                     /gene="rpsI"
                     /locus_tag="U0342_000535"
     CDS             complement(3691..4083)
                     /gene="rpsI"
                     /locus_tag="U0342_000535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002009728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S9"
                     /protein_id="HEM2421896.1"
                     /translation="MAQVQYYGTGRRKSSVARVRLVPGDGKIVINNRDWEDYIPFAAL
                     REVIKQPLVATETLGNYDVLVNVHGGGYTGQAGAIRHGVARALLQVAPEYRPALKSAG
                     LLTRDPRMKERKKYGLKGARRAPQFSKR"
     gene            complement(4105..4542)
                     /gene="rplM"
                     /locus_tag="U0342_000536"
     CDS             complement(4105..4542)
                     /gene="rplM"
                     /locus_tag="U0342_000536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L13"
                     /protein_id="HEM2421897.1"
                     /translation="MRTTYMAKPGEVERKWYVIDATGVSLGRLSSEVASILRGKNKPQ
                     FTPHIDTGDFVIIINAGKIGLTGKKATDKIYYRHSQYPGGLKSRTAGEMRTNNPEKLL
                     ELSIKGMLPKNSLGRQLFKKLHVYGGAEHEHAAQQPEVYELRG"
     gene            complement(4737..5483)
                     /gene="truA"
                     /locus_tag="U0342_000537"
     CDS             complement(4737..5483)
                     /gene="truA"
                     /locus_tag="U0342_000537"
                     /EC_number="5.4.99.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(38-40) synthase TruA"
                     /protein_id="HEM2421898.1"
                     /translation="MTRYKAIISYDGSGFYGYQVQPNTRTVQAEIEKALTKMHKGKTV
                     RITASGRTDTGVHAKGQVIHFDSELDITAEKFQKALQVMTPFDISFLTVEEVPDDFHA
                     RFGTVGKEYRYVVKRTKIFDPFSRNFALHYPYELDISKMKLASKRLIGEHDFTSFCSA
                     RTERDSKVRTLYSIDFYEEDDETLVIAFQGNGFLYNMVRILTGTLLDAGQGRISPDDI
                     SEALLARDRQKLISKTAPPQGLYLWRVDYE"
     gene            complement(5489..6286)
                     /locus_tag="U0342_000538"
     CDS             complement(5489..6286)
                     /locus_tag="U0342_000538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM2421899.1"
                     /translation="MMDKMILGRYIPGNSWLHRIDPRAKITAVMAFIAIVFLANNWLT
                     YALMFAYVLYLVLTSKVPFLFFIKGLQPIFWLILITLLLQVFFTKGGTVLVDLGLLQI
                     TTLGLTNGAMMFCRFVLIIFMTTLLTLTTSPIELTDGLEKILAPFRLVHLPVHELALM
                     LSISLRFIPTLMDETEKILKAQKARGVEFTSGKWSDRIKAIIPLLVPLFISAFKRAED
                     LAIAMEARGYRGGKGRTRFRLLRWRFADTLLLISLVVLSGLLFWLRS"
     gene            complement(6289..7155)
                     /locus_tag="U0342_000539"
     CDS             complement(6289..7155)
                     /locus_tag="U0342_000539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2421900.1"
                     /translation="MEIKLEQLGYCYQKNSPFEKRALLDVNVSFDSGSYSAIIGHTGS
                     GKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRKKVGIVFQFPEAQLFEET
                     VEKDICFGPMNFGVSEEDAKLRAKKVIYEVGLTEEILSRSPFELSGGQMRRVAIAGVL
                     AMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLVTHSMEDAARYAEKIVL
                     MKAGTVLQIGTPREVFAKPDELVDLGLSVPDVVRFQGLFERKFDVKLTKTCLTIDELT
                     TEMAPYLAKGGA"
     gene            complement(7131..7970)
                     /locus_tag="U0342_000540"
     CDS             complement(7131..7970)
                     /locus_tag="U0342_000540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2421901.1"
                     /translation="MAESFVRLEHVFYKYEDTEKYAVKDVSISAQKGEWVALVGHNGS
                     GKSTIAKLLNGLLFPEDGLIKIGHFVLSEKNIWDIRRQVGMVFQNPDNQFVGATVQDD
                     VAFGLENHGVPHDTMVERVESALNEVGMQSYALHEPARLSGGQKQRVAIAGVLALQPD
                     VIILDEATSMLDPRGRAEVMETIRIMREQEDITVISITHDLDEVLFADRVIVMNNGEV
                     HSEGTPQEIFEQADAMREIGLGVPFIIELQEKLVAGGFETGSTVLSEGALLDQLWKLN
                     SNN"
     gene            8101..8763
                     /locus_tag="U0342_000541"
     CDS             8101..8763
                     /locus_tag="U0342_000541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MgtC/SapB family protein"
                     /protein_id="HEM2421902.1"
                     /translation="MLADFILRLVVAGLLGAIIGLDREIRAKEAGFRTHFLVSLGSAL
                     IMIVSQYGFSEIATMQNVSFDPSRVAAQVVSGIGFIGAGTIIIQKKFVRGLTTAAGLW
                     ATAGIGLAIGAGMYWVGIAATLLTLIGLEFLSIVFKSFAFHTTAIIYSTDKQENLVKV
                     TDKIQQNKQQIVSYSSEKELIGESLFIRVNIVVKTKNKNDEYELFHFIQTLPNVTVEK
                     ME"
     gene            8884..9774
                     /locus_tag="U0342_000542"
     CDS             8884..9774
                     /locus_tag="U0342_000542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetamidase/formamidase family protein"
                     /protein_id="HEM2421903.1"
                     /translation="MKNFVTSERAVFKMDKSAEPAITVKDGSVVKIKTKDYFNGQIQN
                     KQLQYGDLDWKQFSPTTGPIYIEEARSGDLLAVTIEKIELLGTEVFLLNGPNVGITDD
                     LLTSNYTRCYKVRENRIMYSDEIHIPITKTIGLLRTEGLLTSKSPANNDGLLDSSEIT
                     EGATIFLPVEKQGASLYIGNVRATAGFGKTTTTSAEAPAEITLRLQILKNRTAPTPTI
                     IHDNHLICLASDLTIEKAAKKAMQNMITLLTESDKMTTEDAMFLLSLQAEFQVCNMGK
                     ANITTSIKLPLDYFPEMPFL"
     gene            complement(9806..10900)
                     /locus_tag="U0342_000543"
     CDS             complement(9806..10900)
                     /locus_tag="U0342_000543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix DNA-binding domain-containing
                     protein"
                     /protein_id="HEM2421904.1"
                     /translation="MRSLTNAEIAHNRLLNSGLLQSKFSSAEDATRALFGIQSQYQQF
                     GEISLFNRVPNLTKENLQMAYDDKGIIKIWGQRMTVHMYTPDDWFYVHDVYANKNNWL
                     RKHADSLGRDLDEILVQMEELLLREDKVSKESFAALLGNEAKELMTWGGVFIQGSLDG
                     KLFCVPESPKTKFYSHRNQIDSEREDAWITNKRSKTGLETMIDRYFSAFGPATIQDFK
                     HWSGLRNSDYIETLEKLLENYICYIGEDGKNYYSKAKTQENVEMGSPLLLGKFDPLFV
                     SYAKKNWLASEKETSLIWRTAGQIEAVLIINAQFFGTWRYKISGDKIVFQFYLSKKLT
                     KKGQKLVEKEAIKLAEFLLKNYQGSIFEQI"
     gene            complement(11115..11522)
                     /gene="rplQ"
                     /locus_tag="U0342_000544"
     CDS             complement(11115..11522)
                     /gene="rplQ"
                     /locus_tag="U0342_000544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L17"
                     /protein_id="HEM2421905.1"
                     /translation="MGYRKLGRTSSQRKALLRDLATDLIVFERIETTEARAKEIRKVV
                     EKLITSGKKGDLHARRQAAAFIRHEVVEVVQVDAKGKDGSTVKKNRPVYALQKLFDDV
                     APRYAERQGGYTRILKKGPRRGDGAPMVIIELV"
     gene            complement(11539..12483)
                     /locus_tag="U0342_000545"
     CDS             complement(11539..12483)
                     /locus_tag="U0342_000545"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003178382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit alpha"
                     /protein_id="HEM2421906.1"
                     /translation="MIEIEKPKIETIEISDDAKYGKFVVEPLERGYGTTLGNSLRRIL
                     LSSLPGAAVTSIQIDGALHEFSVIEGVVEDVTTMILNIKKLALKIYSDEEKTLEIDMQ
                     GPGVVTAADINYDSDVEILNPDLHIATLSDNAKFHVRLNATRGRGYTPADQNKRENMP
                     IGVLPVDSIFSPVIRVNYQVENTRVGQSTNYDKLTFDVLTDGSISPEEAVSLGAKILS
                     EHLSIFVNLTDEAQKAEIMIEKEESHKEKVLEMTIEELDLSVRSYNCLKRAGINTVQE
                     LADKSEDDMMKVRNLGRKSLEEVKVKLADLGLSLRNEN"
     gene            complement(12593..12982)
                     /gene="rpsK"
                     /locus_tag="U0342_000546"
     CDS             complement(12593..12982)
                     /gene="rpsK"
                     /locus_tag="U0342_000546"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S11"
                     /protein_id="HEM2421907.1"
                     /translation="MARKTNTRKRRVKKNIESGIAHIRSTFNNTIVMITDTHGNALAW
                     SSAGSLGFKGSRKSTPFAAQMAAESAAKSAQEHGLKTLEVTVKGPGSGREAAIRALQA
                     AGLEVTAIKDVTPVPHNGCRPPKRRRV"
     gene            complement(13005..13370)
                     /gene="rpsM"
                     /locus_tag="U0342_000547"
     CDS             complement(13005..13370)
                     /gene="rpsM"
                     /locus_tag="U0342_000547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012748902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S13"
                     /protein_id="HEM2421908.1"
                     /translation="MARIAGVDVPREKRIVISLTYIYGIGKQTAKEVLAEAGVSEDTR
                     TRDLTEEELGKIREILDRIKVEGDLRREVNLNIKRLIEIGSYRGMRHRRGLPVRGQNT
                     KNNARTRKGPSKTVAGKKK"
     gene            complement(13389..13502)
                     /gene="rpmJ"
                     /locus_tag="U0342_000548"
     CDS             complement(13389..13502)
                     /gene="rpmJ"
                     /locus_tag="U0342_000548"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L36"
                     /protein_id="HEM2421909.1"
                     /translation="MKVRPSVKPMCEKCKVIRRKGKVMVICENPKHKQKQG"
     gene            complement(13606..13824)
                     /gene="infA"
                     /locus_tag="U0342_000549"
     CDS             complement(13606..13824)
                     /gene="infA"
                     /locus_tag="U0342_000549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003720929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-1"
                     /protein_id="HEM2421910.1"
                     /translation="MAKEDVIEVEGVVQETLPNAMFNVELENGHKVLATVSGKIRMHY
                     IRILPGDKVTVELSPYDLTRGRITYRFK"
     gene            complement(14211..14858)
                     /locus_tag="U0342_000550"
     CDS             complement(14211..14858)
                     /locus_tag="U0342_000550"
                     /EC_number="2.7.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylate kinase"
                     /protein_id="HEM2421911.1"
                     /translation="MKLVLMGLPGAGKGTQAEQIVEKYNIPHISTGDMFRAAMKNNTE
                     LGKKAKSFMDNGDLVPDEVTNGIVRERLAEDDAKNGFLLDGFPRTVEQAEELENILND
                     LGTELDAVINIEVDKDVLMKRLTGRWICRTCGKTYHEIYNPPKVPGKCDLDGGELYQR
                     DDDKKETVEKRLNVNMKQTKPLLDFYSEKGKLHNINGEQDIKDVFVDVEKILASF"
     gene            complement(14918..16213)
                     /gene="secY"
                     /locus_tag="U0342_000551"
     CDS             complement(14918..16213)
                     /gene="secY"
                     /locus_tag="U0342_000551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecY"
                     /protein_id="HEM2421912.1"
                     /translation="MFQTLVNFFKVADIRKKILFTLAMLVIFRIGTFVPVPGVNAAAL
                     QSSMDGGILGFLNTFNGGALKNFSIFAMGVMPYITSSIIVQLLQMDVVPKLTEWSKQG
                     EMGRKKLNQLTRYMTIGLGLVEAFGMAYGFNRMSSAGLVIEPSIGRYAIIAIVLTTGT
                     MFLMWLGEQITVKGVGNGVSIIIFAGIVARIPDGVRQLYVSQIENAGDQLFLHVLTLV
                     GVGIAILAIVVAVIFFQQALRKIPIQYSKRVAGAKQSGAQATHLPLKLNSAGVIPVIF
                     ASAFIITPQTILTFFDQSNDVVKVLKDVFDYTKPIGMILYVALIVAFTYFYAFIQVNP
                     EKVADNLKKQGGYIPSKRPGRETQAYLTSVLYRLTFVGAIFLSAVAILPTIGTTVFSL
                     PQSLAVGGTSLLIVIGVALDTTKQLEGQLVKRNYRGFIK"
     gene            complement(16213..16653)
                     /gene="rplO"
                     /locus_tag="U0342_000552"
     CDS             complement(16213..16653)
                     /gene="rplO"
                     /locus_tag="U0342_000552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L15"
                     /protein_id="HEM2421913.1"
                     /translation="MKLHELKPSEGSRKERNRVGRGTGSGNGKTSGRGHKGQKARSGG
                     GVRLGFEGGQLPLFRRIPKRGFTNINRKEFAIVNLDVLNRFEDGTEVTPELLVETGII
                     RNEKSGIKILSNGNIEKKLTVKANKFSAAAKEAIEAAGGKTEVI"
     gene            complement(16709..16888)
                     /gene="rpmD"
                     /locus_tag="U0342_000553"
     CDS             complement(16709..16888)
                     /gene="rpmD"
                     /locus_tag="U0342_000553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L30"
                     /protein_id="HEM2421914.1"
                     /translation="MAKLEITLKRSLIGRPQPQRKTVQALGLGKTNSVVVKEDNPAIR
                     GMITKVSHLVDVKEV"
     gene            complement(16905..17408)
                     /gene="rpsE"
                     /locus_tag="U0342_000554"
     CDS             complement(16905..17408)
                     /gene="rpsE"
                     /locus_tag="U0342_000554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S5"
                     /protein_id="HEM2421915.1"
                     /translation="MPEQIDGNKLDLEERVVTINRVAKVVKGGRRFRFTALVVVGDKN
                     GHVGFGTGKAQEVPDAIRKAVEDAKKNMVLVPTVDTTIPHTVVGHFGGGEILLKPASA
                     GSGVTAGGPVRAVLELAGVADVSSKSLGSNTPINMVRATIDGIKQLKNAEDVAKLRGK
                     TVEELLG"
     gene            complement(17430..17789)
                     /gene="rplR"
                     /locus_tag="U0342_000555"
     CDS             complement(17430..17789)
                     /gene="rplR"
                     /locus_tag="U0342_000555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L18"
                     /protein_id="HEM2421916.1"
                     /translation="MITKIDKNKVRKKRHARVRSKISGTESRPRLNVFRSNKNIYAQI
                     IDDVNGVTLASASNLDKDFGSAESKVDAASKVGELVAKRASEKGITSVTFDRGGYLYH
                     GRVKALAEAARENGLEF"
     gene            complement(17829..18365)
                     /gene="rplF"
                     /locus_tag="U0342_000556"
     CDS             complement(17829..18365)
                     /gene="rplF"
                     /locus_tag="U0342_000556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L6"
                     /protein_id="HEM2421917.1"
                     /translation="MSRIGKKTIVIPAGVTVTLNGSTATVKGPKGELVKEFNPEITIN
                     IEGNEINVSRPTDNKNHRALHGTTRAILNNMVVGVSEGYEKKLELIGVGYRAQKQGDK
                     LVLNVGYSHPVEFVAPKGVDIEVPANTQVIVKGYNKEHVGELAANIRAVRPPEPYKGK
                     GIRYEGEHVRRKEGKTGK"
     gene            complement(18396..18794)
                     /gene="rpsH"
                     /locus_tag="U0342_000557"
     CDS             complement(18396..18794)
                     /gene="rpsH"
                     /locus_tag="U0342_000557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003241998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S8"
                     /protein_id="HEM2421918.1"
                     /translation="MVMTDPIADFLTRIRNANMVKHDKLELPASKIKKEIAEILKREG
                     FIRDVEYIEDDNAGTIRVFLKYGATGERVITGLKRISKPGLRVYAKSTEVPKVLNGLG
                     IAIVSTSQGVLTDKEARAKQVGGEVLAYVW"
     gene            complement(18825..19010)
                     /locus_tag="U0342_000558"
     CDS             complement(18825..19010)
                     /locus_tag="U0342_000558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011245027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type Z 30S ribosomal protein S14"
                     /protein_id="HEM2421919.1"
                     /translation="MAKKSMIAKQKRTPKYAVQAYTRCERCGRPHSVIRKFKLCRICF
                     RELAYKGQIPGVKKASW"
     gene            complement(19042..19581)
                     /gene="rplE"
                     /locus_tag="U0342_000559"
     CDS             complement(19042..19581)
                     /gene="rplE"
                     /locus_tag="U0342_000559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L5"
                     /protein_id="HEM2421920.1"
                     /translation="MNRLKDQYLKEIVPALMSKFNYDSVMEVPKIDKIVINTGVGDAT
                     ANAKVLDSAVEELALITGQKPVITKAKNSIAGFRLREGMPIGAKVTLRGERMYDFLDK
                     LVTVSLPRVRDFRGVSKKAFDGRGNYTLGVREQLIFPEIDYDQVSKVRGMDVVIVTTA
                     KSDEESHELLTQLGMPFQK"
     gene            complement(19608..19919)
                     /gene="rplX"
                     /locus_tag="U0342_000560"
     CDS             complement(19608..19919)
                     /gene="rplX"
                     /locus_tag="U0342_000560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L24"
                     /protein_id="HEM2421921.1"
                     /translation="MHVKKGDKVKVITGKDKGKSGKVLAAFPKKDRVLIEGINMVKKH
                     TKPSNINPQGGILNVEAPIHVSNVMLIDPKTGEPTRVGYEVKGDKKVRVAKKSGEVID
                     K"
     gene            complement(19957..20325)
                     /gene="rplN"
                     /locus_tag="U0342_000561"
     CDS             complement(19957..20325)
                     /gene="rplN"
                     /locus_tag="U0342_000561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012727667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L14"
                     /protein_id="HEM2421922.1"
                     /translation="MIQQESRMKVADNSGAREVLTIKVLGGSGRKTANIGDVVVCTVK
                     QATPGGVVKKGEVVKAVIVRTKSGARRQDGSYIKFDENACVIIRDDKSPRGTRIFGPV
                     ARELRENNFMKIVSLAPEVL"
     gene            complement(20405..20668)
                     /gene="rpsQ"
                     /locus_tag="U0342_000562"
     CDS             complement(20405..20668)
                     /gene="rpsQ"
                     /locus_tag="U0342_000562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011064531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S17"
                     /protein_id="HEM2421923.1"
                     /translation="MADRNQRKVYTGRVVSDKMDKTITVVVETYKKHGLYGKRVKYSK
                     KFKAHDENNIAKTGDVVRISETRPLSATKHFRLLEVVEEAVII"
     gene            complement(20696..20887)
                     /gene="rpmC"
                     /locus_tag="U0342_000563"
     CDS             complement(20696..20887)
                     /gene="rpmC"
                     /locus_tag="U0342_000563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L29"
                     /protein_id="HEM2421924.1"
                     /translation="MKANDIRDLSTTEIQDQEKALKEELFNLRFQLATGQLENTARIR
                     EVRKAIARMKTIVRERELA"
     gene            complement(20877..21311)
                     /gene="rplP"
                     /locus_tag="U0342_000564"
     CDS             complement(20877..21311)
                     /gene="rplP"
                     /locus_tag="U0342_000564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L16"
                     /protein_id="HEM2421925.1"
                     /translation="MLVPKRVKYRREFRGNMRGRAKGGTEVAFGEYGLQAVEASWITN
                     RQIEAARIAMTRYMKRGGKVWIKIFPHKSYTSKPIGVRMGKGKGAPEGWVSPVKRGKI
                     MFEIAGVPEDVAREALRLAAHKLPVKTKIVKREEIGGEANES"
     gene            complement(21314..21970)
                     /gene="rpsC"
                     /locus_tag="U0342_000565"
     CDS             complement(21314..21970)
                     /gene="rpsC"
                     /locus_tag="U0342_000565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S3"
                     /protein_id="HEM2421926.1"
                     /translation="MGQKVHPIGMRIGVIRDWDSKWYAEKDYADFLHEDLRIRDYVAK
                     RLSDASVSRVEIERAANRVNITIHTAKPGMVIGKGGSEVEALRKNLNELTQKRVHINI
                     VEIKRADLDAKLVAENIARQLEGRVSFRRAQKQAIQRTMRAGAKGIKTQVSGRLGGAD
                     IARAEHYSEGTVPLHTLRADIDYAWEEADTTYGKLGVKVWIYRGEVLPTKKNNVEGGK
                     "
     gene            complement(21974..22330)
                     /gene="rplV"
                     /locus_tag="U0342_000566"
     CDS             complement(21974..22330)
                     /gene="rplV"
                     /locus_tag="U0342_000566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L22"
                     /protein_id="HEM2421927.1"
                     /translation="MASEVTSAKAVAKTVRIAPRKARIVIDLIRGKQVGEAIAILKYT
                     PRSASPIIEKVLKSAIANAEHNYDLDINNLVVEEAFVDEGPTLKRFRPRAQGRASAIN
                     KRTSHITVVVSEVKEG"
     gene            complement(22351..22629)
                     /gene="rpsS"
                     /locus_tag="U0342_000567"
     CDS             complement(22351..22629)
                     /gene="rpsS"
                     /locus_tag="U0342_000567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000533765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S19"
                     /protein_id="HEM2421928.1"
                     /translation="MGRSLKKGPFVDDHLMKKVEAAAESEKKQVIKTWSRRSTIFPTF
                     VGQTIAVYDGRKHVPVYVQEDMVGHKLGEFAPTRTYRGHAGDDKKTKR"
     gene            complement(22717..23550)
                     /gene="rplB"
                     /locus_tag="U0342_000568"
     CDS             complement(22717..23550)
                     /gene="rplB"
                     /locus_tag="U0342_000568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L2"
                     /protein_id="HEM2421929.1"
                     /translation="MAIKKYKPTTNGRRHMTSSDFAEITTSTPEKSLLRPLKKKAGRN
                     NQGKLTVRHHGGGHKRQYRVIDFKRNKDGIPGRVATIEYDPNRSANIALINYADGEKR
                     YIIAAKGLEVGQTIYSGAEADIKVGNALELKDIPVGTVIHNIEMKPGKGGQLVRSAGT
                     SAQVLGKEGKYVLIRLNSGEVRMILATCRATIGQVGNEQHELINIGKAGRSRWMGKRP
                     TVRGSVMNPNDHPHGGGEGKAPIGRKSPMSPWGKPTLGYKTRKKNNNSDKFIVRRRKK
                     K"
     gene            complement(23591..23875)
                     /gene="rplW"
                     /locus_tag="U0342_000569"
     CDS             complement(23591..23875)
                     /gene="rplW"
                     /locus_tag="U0342_000569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L23"
                     /protein_id="HEM2421930.1"
                     /translation="MDARDIIKRPVVTEESTSILDDKKYTFEVDTRATKTQVKYAVEE
                     IFDVKVAKVNVMNYKGKLKRMGRYAGYTNKRRKAIVTVTADSKEIQFFEV"
     gene            complement(23875..24498)
                     /gene="rplD"
                     /locus_tag="U0342_000570"
     CDS             complement(23875..24498)
                     /gene="rplD"
                     /locus_tag="U0342_000570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L4"
                     /protein_id="HEM2421931.1"
                     /translation="MPKLSLLKQDGTNAGEITLNDTVFGIEPNEKVVVDVILSQRASL
                     RQGTHKVKNRSEVRGGGRKPWRQKGTGRARQGSIRSPQWRGGGVVFGPTPRSYAYKLP
                     KKVRRLAIKSILSSKVNEEKLVVLEGLTFDAPKTKEFAAFLKNISVDTKALIVVAGES
                     ENVELSARNLQGITVIPAESISVLEVAKHDKLIITKAAVEKVEEVLA"
     gene            complement(24524..25153)
                     /gene="rplC"
                     /locus_tag="U0342_000571"
     CDS             complement(24524..25153)
                     /gene="rplC"
                     /locus_tag="U0342_000571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L3"
                     /protein_id="HEM2421932.1"
                     /translation="MTKGILGRKVGMTQVFTENGELIPVTVIEAAQNVVLQKKTVETD
                     GYEAVQIGFEDKRAILSNKPEQGHVAKANTTPKRFIREFRDVNLDEYEIGAEVKVDVF
                     AEGDIIDATGVSKGKGFQGVIKRHGQSRGPMAHGSRYHRRPGSMGPVAPNRVFKNKLL
                     PGRMGGEQITIQNLEIVKVDVEKNVLLVKGNVPGAKKALVQIKTATKAK"
     gene            complement(25188..25496)
                     /gene="rpsJ"
                     /locus_tag="U0342_000572"
     CDS             complement(25188..25496)
                     /gene="rpsJ"
                     /locus_tag="U0342_000572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001118669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S10"
                     /protein_id="HEM2421933.1"
                     /translation="MAKQKIRIRLKAYDHRILDQSAEKIVETAKRSGASVSGPIPLPT
                     EKSIYTVLRAVHKYKDSREQFEMRTHKRLIDIVNPTPQTVDSLMRLDLPSGVDIEIKL
                     "
     gene            complement(25858..26658)
                     /locus_tag="U0342_000573"
     CDS             complement(25858..26658)
                     /locus_tag="U0342_000573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupling factor transporter transmembrane
                     protein EcfT"
                     /protein_id="HEM2421934.1"
                     /translation="MIEKLILGRFVPGESLIHGLDARTKLLAGFYYIGILFLANNWWT
                     YALMVLFTLMVIQMTGIKLKVFIKGVKPLIWLILFTVVMQILFASGGTIYFDWGPFTI
                     SSFGLLNGVFVFLRFVLIIMMSTVITLTTTPMNLTDAIAYILRPFAVLKVPVNDIALM
                     ISVALRFIPTLMGETDKIMKAQRARGVDFGEGNLFEQMKVVVPIFIPLFVSSFNRAEE
                     LADAMEARGYQGGEGRTRFRILHWHFGDLIAACVMILLTAGLVILRTS"
     gene            complement(26679..27638)
                     /gene="menA"
                     /locus_tag="U0342_000574"
     CDS             complement(26679..27638)
                     /gene="menA"
                     /locus_tag="U0342_000574"
                     /EC_number="2.5.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1,4-dihydroxy-2-naphthoate
                     polyprenyltransferase"
                     /protein_id="HEM2421935.1"
                     /translation="MSIPSFLKLVEIQTKIASVFPFMLGTLFVVYQYDMFKPVNTLIF
                     FGSMLIFDLTTTAINNYMDYRKATDNHDYDYRTTSNVIGQEQIPVRTVIITIFLMFFI
                     ATGLGVWLVFRTDLLVLLIGFVCFCIGILYTFGPVPLSRMPLGEIFSGVTMGFGIFFL
                     AVYVNAYDAGIANLLWQGETVTIQFNLIEIIRIGVVSLPCIFTIANIMLANNLCDLDE
                     DIRNHRYTLPYYIGRKMGVLLFNALYYASFLAVVVSVAINFLHPIMLLSLITIYPVYR
                     NLVKFNKEQVKSKTFVIGIRNFVLINATLTILMAVSVVLQQLA"
     gene            complement(27720..28802)
                     /locus_tag="U0342_000575"
     CDS             complement(27720..28802)
                     /locus_tag="U0342_000575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD:protein FMN transferase"
                     /protein_id="HEM2421936.1"
                     /translation="MKKWKIIISVIILALVVSACGNSSKETKSEPSDSKKLMDQPYSK
                     TDFLMGTVVTLKIYDKGKEDVLDKGFDRIKDLAAKITTSDSEKTSEVDKINEQAGKKP
                     VKVSKDVYYLIQEGLKYSENSGGSFDITIGPLTSLWHIGFSDARKPSQAEIDAVLPLI
                     NYKDVKMNDKDQTVYLEKEGMELDLGAIAKGFITDETLKVFKENKVTTSIIDLGGNIY
                     VQGNNPNGNKWNVGIQDPFSPRGSVIGKLPESNMSIVTSGIYERYLEVDGKTYHHILD
                     PKTGYPFDNDIAGVSIVSKKSIDGDGLSTATFSKGVKGGMDYIEQFEGVDAIFISKEK
                     KVYETSGLKGQFELTDKDFQMDTLKK"
     gene            complement(28966..29865)
                     /locus_tag="U0342_000576"
     CDS             complement(28966..29865)
                     /locus_tag="U0342_000576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-binding protein"
                     /protein_id="HEM2421937.1"
                     /translation="MKLKKVAMGITVVMASSLLLVGCGSSDDSSKDKKSTDTKQTETK
                     KTAKTDGTMTDGTYKLEEKNFDDKGWKGFMSIEVKDGKITKANYDYKNKDGKLKSEDA
                     DYEKAMKDKVGTGPQEYLKQLSDSLVKNQSAASVEVVSGATHSSDAFINYANQLIQAA
                     QKADTTTISINNLAKMEDGTYKLEEQNYAHGYRVVFSMDVKDGKITKSDYNYVDKDGK
                     LKSDDADYEKNMKAKSGTGPKEYIPALNKSLVEKQDVAAVDTVSGATNSSNQFKIYAA
                     QLQNAAQNGNTDTIKVYNLVEAE"
BASE COUNT         8934 a         6324 c         5406 g         9720 t
ORIGIN      
        1 aagagcactg aagcgttatt ttctgatctt aaatttaagg aaagaaatga tagacgcaaa
       61 ttatcgagat gaaagacatg tgaccgaacg tgtagtacaa atgccaacta tcaaagtaga
      121 atttgataat aaagaaatga cttctggaaa attaattgta cgagattcat tggaatttca
      181 tgaccgtctt gcaaaagcaa catttactcc ttcactaaaa ggttttaaag tggaagattt
      241 ctatctatcg gatgatggtg attggtggat ttataatttc tattcagtaa attcacaaat
      301 tcaagcagtc ttcgattcat tggaagaata cttaaattgg tcaaatgaaa caacaaacaa
      361 atttcaattg agaatcgata accgtctatc attcgattta aaacacacac ttcttgttgg
      421 tgctactaga agcggaaaaa cttatggatt gattggatta ttgctccaaa tgataaataa
      481 attgattcat tacgaattgt tttttgcaga cccgaagaat gaccaattaa ggaaaattgg
      541 aaactggatc aatggcaaga acacagctta cacaaccgaa aatattatag atttgattga
      601 tagttacaat aacggcgaaa aagaccctgt ttctctatgg aagcgcacgc agctccaata
      661 gtaaagcttc tagttctaag ttctgaagct actaactgcc agagcgtagc gtccctgtcg
      721 gcttttgccg acagggctgg cataagggca tagcccgtac agctccaagt ttcagaactc
      781 cgctgtttcc taataagcgg agttccaaaa cagtgaaaaa agctcattta ttaagccaga
      841 atagttggtt taacagcatt tatctctata ttaaacgcta taaaacatta cgcaatgttt
      901 ttagaaagga tgacaaaagt tatgactgtg acagccgata ttgatcaatt cacattaata
      961 cttcagccaa gatctctggc atttgacttt gatgattggg aaaagtggaa agcagaaagt
     1021 ctggattaga gttattattc gggctggtag aagaagtaga tggtggaatt ctaaaaaatt
     1081 atacaaaagg ttatacgttt ttagatgctc ccttctattt tcgcatcgcc tatcatccgt
     1141 tttatgtaaa catgggtgtt tcaatatact tttcggctta tgcgtggagt gaataccgca
     1201 aaagatatga agaatatttt aacaaaccga ttcatctaca cacatttttt cagttaatcc
     1261 attcaaaaga ttattcatat agacttagtc gtatcgatat ggtcattgat tttaaaaatg
     1321 aaggggtaga tatcgcaaag atatatcgct ctttagaggc tggaagaact gaggtgagat
     1381 acaaccatga ttaatgatga gaagaaattt aaaaagaatc aatccaagat tagggatgtt
     1441 agtagcaatt ttaatgcaca aacgatctat atcggtaaac gtggcgaaaa tatcgatgct
     1501 atgcttagaa tttatgacaa aaaagccgag cagttaggaa gtagtaaacg atgacgcact
     1561 taagacatga agcagaaaaa ctagatgact gggtacgtta cgaagccgaa tacaaagggc
     1621 gctatgcaca ccaactaact gacgcaatcg agaattgtaa gtcagatgaa gaattgaaaa
     1681 acattattgt tagttctatt ttagatcggt acggatttta ctatacaaaa gaaagtaaaa
     1741 aagggaaaat aaaccgtccg actatagaaa ctaaaaaaat gctagatctg ttaaataata
     1801 atgattttaa attcgattct ccctcaccaa gaaacaacat gttaaatcaa acaataaatt
     1861 atatccaaaa aaacagtggt ttatttcctt tgctttggaa agtagatgga atctggggag
     1921 atggaactta taaagagtta ctggagtggt tgggtgacca gtactacaat agttttgaac
     1981 ccaatgatga ccatatatct tggttaaata agtacaaggc actttaccaa ttagagggta
     2041 agccttggga aggatgatat gacaatgaat aagccacaag taagatcaaa cataaaccac
     2101 attattaaaa tggctgactc tgttctaaag gatgaaaata caattaacaa aaggactagt
     2161 gattcagatt atcaaaaaca tatctataca cccgaagcta tcttagcaaa tattaaagat
     2221 agtgctgaaa gtgcattgaa agcattaaac gaatatgaat aaaaataatg aaatggagat
     2281 ggtgctttat gagcatcgat aaaaacacaa atgactatcc ttacctttta actcgtgaac
     2341 aagcgtcaga tttttttagg tatagaccct aagtcttttg ataaatatat ccgacagcat
     2401 gaagagctgg aacgtttcat gattggtagg cacgaacgat acacaatgaa atctctagta
     2461 cactttatcg aaaaacattc cgtttaaaat atcaacagtt gataagatgc tggtttagaa
     2521 atacaatata gttgtattca actagcatct atcaacttta tttatgaaag ggattgatag
     2581 tatggctagt atagttaaaa gaggaaaatc atacagggca caagtttcat tatataagca
     2641 cggtcaacat aaaaagattt ctcagacctt ttcgacaaag aaagaggaaa atctttgggc
     2701 gttagaaatg gaattagcga aaggagaagg taaagaactt gctcacagaa cgacaacatt
     2761 tgcggacttc ttcgagaatt ggatttatct tgtaaaagta aatgatgtta aagaaacaac
     2821 atttcaaaat tacgttcgta ccttaggcat tattcgaaat ttatttcaag acatccaatt
     2881 aaaagattta aatgatattg ttgttcaaaa gaaggttgat gagtatgcca agacacattc
     2941 tcgaaaaaca acacatgagg ttcttcttaa aataaaaaca tctttacgtg atgcatatgc
     3001 tcgtggatat attgcaaatg attttgcacg attagtgaaa acccgagggg aaaagccacc
     3061 taaacgtaat aaagcattat ctatcaccga ttttagaaag cttcgtaact acgttttaca
     3121 gcatccagaa gacgaattta acttacttgt attacttgca ttagaaacag gtatgcaacg
     3181 tggggaacta ctagcaatac gcccagagag tctttatgaa tacggaataa aagttaggca
     3241 ttcaatcagt cctacttctg atgacacttc gttaaagaca ctaaatgcaa aacgtgatgt
     3301 ttctattaac aaagaagtat atgaactcat tcgtaaaatt cctgttaaag aggatggtta
     3361 tattttcagc tttggcggtt ttaaacagtc ggaacaatta gcggagttat tgaagaaatt
     3421 agatattaag aagacaacgt ttcacggttt aagagacact catgcatcgt ttttatttgc
     3481 tcaagatata gatattgctt atgtatcaaa gcgattaggt cacattaata ttcaaaccac
     3541 acagaattat tatctggaat taatgccaga aaaaaagcac cagcaagatg ccgatgcttt
     3601 aaatctgtta agtgctttat aaggttcaag ttgatttgaa ccaacttgaa ccaaaaaagc
     3661 tctgtaaaca ttgatatatc aatgtttcta ttaacgtttt gagaactgag gtgcacgacg
     3721 cgcgccttta agtccgtatt ttttacgttc tttcatacgt gggtcacgag taagtaggcc
     3781 agcagattta agtgctgggc ggtactcagg agccacttgt aatagtgcac gagctacacc
     3841 atgacggata gcaccggctt gaccagtgta accaccaccg tgaacgttta ctagtacatc
     3901 atagttacct aaagtttctg tagctactaa aggttgtttg ataacttcac gaagagctgc
     3961 gaatgggatg taatcttccc agtctctatt gttaataacg attttgccgt cgcctggtac
     4021 taaacgtacg cgagctacag agcttttacg acgaccagtt ccgtaatatt gtacttgagc
     4081 cacttagtat tcctccttta ttaattaacc gcgtaattcg tatacttctg gttgttgagc
     4141 tgcgtgttcg tgctcagctc caccatatac gtgtaatttt ttgaataatt gacgtccaag
     4201 agaatttttt ggaagcatac ctttgataga tagttctaat aatttctcag gattgtttgt
     4261 acgcatttcg cctgcagtac gagatttcaa accgcctgga tattgagagt gacggtagta
     4321 aattttgtca gtagcttttt taccagtaag accaatctta ccagcgttga tgatgattac
     4381 aaagtctcca gtgtcgatat gtggagtaaa ttgtggtttg ttttttccgc gaagaattga
     4441 agcaacttca ctggataaac gtcctaaaga aacaccagta gcgtcgataa cgtaccattt
     4501 acgttctact tcgccgggtt tcgccatata agttgtacgc atgaattacc ctcctaaata
     4561 aattgaaaca aattagctcc cgaaaactgt tcctaattcc cgaaatgcta ttctatattt
     4621 ttattgttta aacacaacaa ccttccgggg cttattgtgg ggcaaacaat accatagtcc
     4681 ataatacagt ttttggagca aaaagtcaat gcgttctgca aaaaaacatc caatttttat
     4741 tcatagtcca ctcgccataa atataaccct tgtggcggcg cagttttact aattaatttt
     4801 tgccggtcac gtgctaataa agcctcacta atatcatccg gagagattcg accttgccct
     4861 gcatcgagca aagttcccgt caaaattcgc accatattat acaaaaagcc attcccttga
     4921 aaagcaatca ctaacgtctc gtcgtcctct tcataaaaat caatactata aagtgttcgg
     4981 actttagaat cgcgctccgt tctcgccgaa cagaagctag taaaatcatg ctcgccaatc
     5041 aggcgtttac tcgccaactt catttttgaa atgtccagtt catatggata atgtagcgca
     5101 aaattccgac taaaaggatc aaaaattttc gtccgcttta ccacataacg atattctttt
     5161 ccaactgtgc caaatctagc gtggaaatcg tctggtactt cttccactgt taaaaagcta
     5221 atatcgaacg gagtcatgac ttgcaaagct ttttgaaatt tttcggcagt gatatcaagt
     5281 tccgaatcga aatgaataac ctgacctttc gcatgaacac cagtatctgt tcttcctgat
     5341 gctgtaatcc gcacagtctt gcctttatgc atttttgtca gtgctttttc aatttccgct
     5401 tggaccgtcc gtgtattcgg ctgcacctga tagccataaa acccgctacc atcataagaa
     5461 attatcgctt tatatctcgt catttatttc aactccgcaa ccaaaataat aatccactta
     5521 acactactaa cgaaatcagt agcaacgtat ctgcaaatcg ccagcgtagt aaacggaatc
     5581 tcgttctccc tttaccacca cgataaccgc gtgcttccat tgcaatcgct aaatcttccg
     5641 cacgtttaaa cgcactaata aaaagtggca caagcaacgg aataatcgct ttaatccgat
     5701 cactccattt tccactcgta aattcaacgc cacgagcttt ttgcgctttt aatattttct
     5761 ccgtttcatc catcaatgtt ggaataaatc gtaaagaaat actcagcatc aaagcaagtt
     5821 catgtactgg taaatgtact aaacgaaacg gcgctaaaat tttctccagt ccgtctgtta
     5881 gttcaatcgg gcttgtcgtt aatgttaaaa gtgttgtcat aaaaataatg agaacaaagc
     5941 gacaaaacat catcgctcca tttgtcagtc cgagtgtcgt tatttgtaaa agtcctaaat
     6001 cgactaaaac tgtcccgcct tttgtaaaaa agacttgaag taatagcgta attaaaataa
     6061 gccagaaaat cggttgtaac cctttaataa aaaataaaaa tggcactttc gaagttagga
     6121 ctaaatacaa aacatacgca aacataagcg cataggtcag ccaattgttc gctaaaaaga
     6181 caatcgcgat aaacgccata acagcagtga ttttcgcacg tgggtcaatt cgatgcaacc
     6241 aagagtttcc cggaatataa cgtccgagaa tcattttatc catcataatt atgccccgcc
     6301 cttcgctaaa taaggcgcca tttcggtcgt taattcatca atggttaaac aagtttttgt
     6361 taatttcaca tcaaatttgc gctcaaaaag tccttggaat ctcaccacat ccggtacaga
     6421 taacccaaga tcaaccagtt cgtctggctt cgcgaaaact tcacgtggcg taccgatttg
     6481 aagaaccgtc ccagctttca tcaagacaat cttttccgca taacgagcag catcttccat
     6541 actgtgtgtt acaagtactg tcgtaagccc tttttcttta tgaagattgt agaacatttc
     6601 catgatttcc tcgcggccat gaggatctag tcccgctgtt ggctcatcta gcacaagtac
     6661 ttctgggtcc atcgccaaaa cacctgcaat cgcaacccgg cgcatttgcc caccagaaag
     6721 ttcaaacggc gaacgtgaca aaatttcctc ggtcagtccc acttcataaa tcactttttt
     6781 agcgcgtagt tttgcatctt cctcggaaac tccaaagttc atcggtccaa aacaaatatc
     6841 cttttcgacc gtttcttcaa aaagttgtgc ttctggaaat tggaacacaa tcccgacttt
     6901 cttacgtaaa tcacgtagtt tcttttgctt tacgccagca acgatttctc gatcaccaac
     6961 tgtgatttta ccttctgttg gcattaaaag agcgtttaag tgttgtagca aagttgattt
     7021 ccctgagcca gtatgaccaa taattgcaga atagctacca gaatcaaaag aaacattcac
     7081 atcaagtaat gctcgctttt caaaagggct atttttttga taacaataac ctagttgttc
     7141 gagtttaatt tccataattg atctagtaat gctccttccg atagcacggt gcttccagtt
     7201 tcaaagccac ctgcaactaa tttttcttgt aattcaataa taaatggaac acctaagcca
     7261 atttcgcgca ttgcatctgc ttgctcgaaa atttcttgcg gtgtgccttc actgtggact
     7321 tctccgttat tcataacaat tactcgatcc gcaaaaagaa cttcatccaa atcatgtgta
     7381 atcgaaataa cggtaatgtc ttcttgttca cgcataatcc gaatagtttc cattacttcg
     7441 gcgcgccctc ttggatcaag catagaagtc gcttcgtcca aaataatgac atctggttgc
     7501 agcgccaaaa cgccagcaat tgctacccgt tgtttttgcc caccagaaag tctagctggt
     7561 tcatgtagtg cataactttg catcccaacc tcattcaaag ctgactcgac gcgttccacc
     7621 attgtatcgt gcggaacccc gtgattctca agtccaaacg cgacatcgtc ttgcactgta
     7681 gctccaacaa attggttatc tggattttga aaaaccattc ctacttgtcg tctaatgtcc
     7741 catatatttt tttcagacaa aacaaagtgt ccgattttga ttaaaccatc ttctggaaaa
     7801 agcaatccgt tgagtaattt cgcaatggta gatttacctg aaccattatg accaacaagt
     7861 gcaacccatt cccctttttg agcagaaata gatacatctt tcactgcata tttttccgta
     7921 tcctcatatt tataaaaaac gtgctctaat ctcacaaaac tttctgccac gcttaacacc
     7981 tcactttttg accattcatt gtttattata gtataaacat ccatccggcg caaaatttcc
     8041 tttttgattg ttttggttta atgccaaagg gaatatatta acgttaagga tgtgataact
     8101 atgttagcag attttatttt acggcttgtt gttgcgggtc tccttggagc aattattgga
     8161 cttgaccgag aaatcagagc gaaagaagct ggattccgga cacattttct tgtttcgctc
     8221 ggtagcgcat taattatgat tgtttctcaa tatggttttt ccgaaattgc caccatgcaa
     8281 aatgtatcgt ttgacccaag tcgtgtcgct gctcaagtgg taagcgggat tggctttatt
     8341 ggcgcgggta cgattattat tcaaaagaaa tttgttcgcg gtctaacaac agcagccgga
     8401 ctttgggcca cagctggcat tggccttgct attggtgcag gtatgtactg ggttggaatt
     8461 gccgctactt tacttacctt aatcggatta gaattcttga gtatcgtttt caaatcattt
     8521 gcctttcata caactgcaat tatctattca accgacaaac aagaaaatct agtgaaggtc
     8581 acggacaaga tccaacaaaa caaacaacaa atcgtttcgt actcaagtga aaaagaactt
     8641 atcggagaaa gtctttttat tcgcgtgaat attgttgtaa aaacaaagaa taagaacgat
     8701 gaatacgaac tatttcactt tatacaaact cttcccaatg taaccgttga aaaaatggaa
     8761 taaagaattg ctttctactg tttgcaactc ggttttgttc acagaatatc catttacttc
     8821 ctacttctca ttttgctata attcacccgt cactactaat agaatataga gagaagggaa
     8881 gagatgaaaa actttgtaac ttcagaacgc gcggttttta agatggataa atcggcggaa
     8941 cctgcaatta cagtgaaaga tggctctgta gtaaagataa aaacaaaaga ctacttcaat
     9001 ggccaaattc aaaacaaaca gcttcaatac ggggacctag attggaaaca attttcacca
     9061 actactggac caatctatat cgaagaagct agaagtggag atttattagc ggtaacgatt
     9121 gaaaaaattg aactcctagg gacggaggta tttttactaa acggaccaaa tgttggtata
     9181 acagatgatt tattaacaag caactatact cgttgctaca aagtcagaga gaatcgaatt
     9241 atgtattcag atgaaattca tattccgata actaaaacta tcggattgct acgaacagaa
     9301 ggcttactta cctccaaatc accagctaac aacgacggcc tactcgactc atccgagatt
     9361 acagaaggtg caacgatctt tttaccagtt gaaaaacagg gtgcatcgct ttacatcggc
     9421 aatgttcgag ctacagctgg cttcgggaaa actactacca cgagtgcaga ggcgccagca
     9481 gaaatcactt tacgacttca aatccttaaa aatcgaacag ctcccacacc cacaatcatt
     9541 catgacaacc atttaatttg cttagcatca gatctcacta ttgagaaagc ggcaaaaaaa
     9601 gcgatgcaaa atatgataac tttacttact gaatcagata aaatgacaac tgaagatgcg
     9661 atgttccttc tatcactgca ggctgagttt caagtatgca acatgggtaa agcaaatatc
     9721 actaccagta tcaaattacc tttggattat tttccagaaa tgccattttt ataagaaaag
     9781 aacccccgtt ctgacggggg ttcttttaaa tttgttcaaa aatgctgcct tggtagtttt
     9841 taaggaggaa ttcagctagt tttatcgctt ctttttctac taatttttgt ccttttttag
     9901 ttagtttttt actaagatag aattgaaaaa ctattttatc ccccgatatt ttatatctcc
     9961 acgttccaaa aaactgagca tttattatta agacagcttc aatttgccca gcggtgcgcc
    10021 agattagact cgtttctttt tcgctcgcaa gccaattctt tttcgcgtaa cttacgaaaa
    10081 gcggatcaaa cttccctaat agaagcggcg accccatctc cacattttcc tgcgtttttg
    10141 ctttgctata atagttcttg ccatcttcac cgatatagca tatatagttt tcaagtaact
    10201 tttctaacgt ttctatataa tcactatttc gcaaaccact ccaatgcttg aaatcttgta
    10261 tagtcgctgg cccaaatgca ctaaaataac gatcaatcat tgtttcaaga cctgtcttgc
    10321 tgcgcttgtt agttatccaa gcatcttctc tttctgaatc aatttggttt ctatgactat
    10381 aaaattttgt tttaggactt tctggcacac aaaacaactt gccatcgagt gacccttgaa
    10441 taaaaacccc gccccatgtc atcagctctt ttgcttcatt acctagtaaa gccgcaaagg
    10501 actctttaga cactttatct tcgcgcagga gtaattcttc catttgtact aaaatctcat
    10561 ccaaatcacg tcctagagag tctgcgtgct ttcttaacca attgtttttg ttcgcataaa
    10621 catcatgaac ataaaaccaa tcatccggcg tatacatatg gacagtcatt ctttgccccc
    10681 agattttgat tatcccttta tcgtcgtaag ccatttgcag gttttctttg gttaaattag
    10741 gtacacgatt aaataaacta atctctccaa attgttgata ctgcgactga ataccaaata
    10801 acgcacgagt tgcatcctct gcgctggaaa atttagattg tagtagtcca gaattaagta
    10861 atctattgtg agctatttcc gcgttagtta acgaacgcat tctccgtccc tcccactgtt
    10921 tatctttgga atttactata gatggtttcc agtataaagg caagaaaaaa agacctgcta
    10981 tacatagata acaggtcaaa caaaaaaagc ctgcctccta gcctacgatt aagtagacta
    11041 ggaaacacag agctagacaa ggaaacacga agtctccata tcatgacact ccacttgctt
    11101 taaacgtttt attattaaac taattcaata ataaccattg gtgcgccgtc accgcgacgt
    11161 ggaccttttt tcaagatacg agtgtaacca ccttgacgtt ccgcgtaacg tggagcaaca
    11221 tcatcaaata gtttttgtag agcgtataca ggacggtttt tcttcacagt tgaaccatct
    11281 ttacctttag catctacttg tactacttct acaacttcat gacggatgaa agcagctgct
    11341 tgacgacgag cgtgcaagtc tccttttttc ccagaagtga ttagtttttc aacaacttta
    11401 cgaatctctt tagcgcgagc ttctgttgtt tcaatacgtt caaatacgat taaatccgtt
    11461 gcaagatcac gtagtaacgc tttacgttgt gagcttgtac gacctaattt tctgtaaccc
    11521 atggaattgc ctcctttatc agttttcgtt tcttagagat aagccaaggt cagccagttt
    11581 tactttaact tcctcaagcg atttacggcc caagttacgg actttcatca tatcgtcttc
    11641 ggatttgtca gcaagttcct gtactgtatt gattccagcg cgtttcaaac aattatatga
    11701 acgaacagac aagtctaatt cttcaatagt catttcaagc actttctctt tatggctttc
    11761 ttctttttca atcataattt cagctttttg tgcttcatct gttaagttaa cgaagatact
    11821 taagtgctca gaaagaattt tagctccaag tgaaactgct tcttctgggc tgatacttcc
    11881 gtcagttaac acatcaaacg taagcttatc ataattagtt gattgtccaa cacgtgtatt
    11941 ttccacttga tagttcacac ggataaccgg tgaaaagatt gaatcgactg gaagtacacc
    12001 aattggcata ttttcgcgtt tattttgatc agcaggtgtg taaccacgac cacgagtcgc
    12061 atttaaacgc acatgaaatt tagcattatc acttaatgta gcaatgtgta agtcgggatt
    12121 taaaatctca acgtcgctgt cataattaat gtcagctgca gttactacac caggaccttg
    12181 catatcgatt tctaatgttt tttcttcatc agaatagatt tttagtgcaa gttttttaat
    12241 atttaaaatc atggttgtta catcttctac tacaccttca attacagaaa actcatgtaa
    12301 agctccatca atttggatag aggttactgc tgcacctgga agagaagata atagaatacg
    12361 acgtaaggag ttacccaaag ttgtaccata tccacgctca agtggctcta caacaaactt
    12421 tccatacttg gcatcatcgc tgatctcaat cgtctcgatt tttggctttt caatttcgat
    12481 cattcaaatt taccctcctt caaaacgtct agaatatcag tctttatgtc aaactctctg
    12541 ccttgatagt taagacagta aaaatctact attggcaaaa gaaaacgacc acttatacgc
    12601 gacgacgttt tggaggacga catccgttat gtggaactgg agttacatct ttaatagctg
    12661 ttacttcaag accagctgct tgtagtgcac ggatagccgc ttcacgacct gaaccaggac
    12721 ctttaacagt tacttctaat gtttttaaac catgttcttg tgctgatttt gctgcacttt
    12781 cagctgccat ttgcgctgcg aaaggagtag atttacgaga acctttaaat cctagggaac
    12841 ctgcacttga ccaagctaaa gcattaccat gtgtgtcagt aatcattacg atcgtattat
    12901 taaatgtaga acggatgtgt gcaataccag attcgatatt ctttttcaca cggcgtttac
    12961 gagtatttgt tttacgagcc attcactaac tacctccttt actattattt ctttttgcct
    13021 gctactgttt tggacgggcc tttacgagta cgggcattat tttttgtatt ttgtccgcga
    13081 actggaagtc cacgacggtg acgcatgcca cggtaagaac cgatttcgat tagacgttta
    13141 atgtttaagt ttacttcacg acgaaggtca ccttcaactt taatacggtc taagatttca
    13201 cggattttac ctagctcttc ttcagttaaa tcacgagtac gagtatcttc agaaacgcca
    13261 gcttcagcaa gaacttcttt agctgtttgt ttaccgatac cataaatgta agtcagggaa
    13321 ataacaatac gtttttcacg tggaacgtcc acacctgcaa tacgtgccat ttacttaagc
    13381 acctcctctt atccttgttt ttgtttatgt tttggatttt cacaaattac cattacttta
    13441 cctttacgac gaataacttt acatttttcg cacataggtt tcactgatgg tcttactttc
    13501 atatagatat acctccttgt ttattagaga aaatgtctct ataaaccgat aatttctaag
    13561 ctggataaac cagaccggta tataaattca atttcggagt gcaaattatt taaaacgata
    13621 agtaattctt ccgcgtgtca ggtcgtatgg agaaagctct actgtcactt tatctccagg
    13681 taaaatacga atgtaatgca tacggatttt accagaaaca gttgccagta ctttatgacc
    13741 attttcgagt tcaacgttga acatcgcgtt tggtagagtt tcttgtacta cgccttctac
    13801 ttcaataaca tcttcctttg ccatatgttt gctacctcct tcttgtattc ttggatttgt
    13861 tcctgatgca ggcctaatcc tttcagtgta actatttctc ttacatgaaa aaaacgtaaa
    13921 acatgcaaaa atggatgcac ttcattaaaa ggcaacacat ttcgccagct tttcagacaa
    13981 cctgtaaaag tgaaatccgt aaaaaccaga agaactgtca ctcgcaaaag tattgcggct
    14041 gaacagatca aggtagaaca tatacgtcat tcggatgatc ttcaaacggt tctctcgttc
    14101 atcatgattt gcttagatgc ctttaattcc actgccaatt atccattata ctacaaacta
    14161 aactaatttg cacgcattga ttttgacagt gattcagcac agctcactcc tcaaaaagaa
    14221 gcaagaattt tttccacatc tacaaaaacg tctttaatgt cttgctcgcc gtttatgtta
    14281 tgaagtttac ccttttcaga ataaaaatct agaagcggct tggtctgttt catatttaca
    14341 tttagtcgtt tttcaaccgt ttctttcttg tcgtcatcgc gttggtaaag ttctccgcca
    14401 tctaaatcac atttcccagg aactttcggt gggttgtaaa tttcatggta agtcttaccg
    14461 caagtccgac aaatccaacg acctgtaaga cgtttcatta aaacatcttt atcaacttca
    14521 atgttaatga cagcatcaag ttctgtccct aaatcattta gaatattttc tagctcttct
    14581 gcttgttcca cagtgcgcgg aaaaccatca agcaagaaac cattcttagc atcatcttcg
    14641 gccaaacgtt cacgaacgat accatttgtt acttcatcag gaacaaggtc gccattatcc
    14701 ataaaggatt tagctttctt tcctaattcc gtattatttt tcatagctgc tcggaacata
    14761 tctccagtgg aaatatgagg aatgttgtat ttctcaacaa tctgttccgc ttgtgtgcct
    14821 tttccggcgc cgggcagtcc cattaatact aatttcaact gtttcgcccc ttattacgcg
    14881 ctagctcctg ctaggaagac ctaacaagaa ctgcgtgtta tttgataaat ccccgatagt
    14941 tcctttttac aagttgtcct tcgagttgtt tcgtagtatc taatgctacc ccgataacaa
    15001 ttagtaggct tgtaccacca acggcaagtg actgcggtaa actaaacaca gtagtaccga
    15061 tagttggaag tatagcaacc gctgaaagga aaattgcacc aacaaatgtt agacggtaaa
    15121 gtaccgatgt aagataagct tgtgtttccc gaccaggacg tttactagga atatacccac
    15181 cttgcttttt caagttgtct gcaactttct cagggttcac ttgaatgaaa gcatagaaat
    15241 aagtgaaagc aacaattagt gcaacatata aaatcatacc aattggtttt gtgtaatcaa
    15301 acacatcttt caatactttt acaacatcgt tactttgatc aaagaaagta aggatagttt
    15361 gtggtgtaat aataaatgca cttgcaaaga taacagggat aactccggca gagttaagtt
    15421 ttaacggcaa gtgcgttgct tgcgcgcccg attgttttgc tcctgctaca cgtttagagt
    15481 attgaattgg aattttgcgt agtgcttgtt ggaagaagat tacagctaca acaatagcta
    15541 aaattgcaat ccctacacca actaatgtca gaacatgtag gaaaagttga tcaccagcgt
    15601 tttcaatttg cgaaacatat aattgacgaa ctccatcagg aatacgagca acgatacctg
    15661 caaagataat gatggaaaca ccattaccaa cgcctttaac agtgatttgt tcacctagcc
    15721 acattaagaa cattgtacca gtagtcaata caatagcgat aattgcatat ctaccaatgg
    15781 aaggttcaat tactaagcca gctgaagaca tgcggttaaa tccatatgcc ataccgaaag
    15841 cttccactaa accaagtcca attgtcatgt atctagtaag ttgattgagt tttttacgac
    15901 ccatttcccc ttgcttcgac cactcagtca atttaggaac aacgtccatt tgaagtaact
    15961 gaacaataat ggaagatgta atgtaaggca ttacacccat ggcaaaaatt gagaagtttt
    16021 ttaaagcccc accattaaat gtatttaaga accccaaaat accgccatcc atactagatt
    16081 gtaaagctgc tgcgttaact cccggtactg gcacgaatgt accaatacgg aaaataacta
    16141 gcattgctaa tgtaaatagt atttttttac ggatgtctgc tactttgaag aagttaacta
    16201 acgtttgaaa cattagatca cctcagtttt tccgccagcc gcttcaattg cttctttcgc
    16261 agctgcagag aatttgttcg ctttcacagt aagttttttc tcgatatttc cattagataa
    16321 aatcttgatt ccggattttt cattacgaat aattccagtt tcaactaaaa gttctggtgt
    16381 tacttctgta ccatcttcaa agcggtttaa aacatctaag ttcacgatag caaattcttt
    16441 acggttgata tttgtgaatc cacgttttgg aatacgacgg aaaagtggaa gttgtccacc
    16501 ttcaaagcct aaacgtacgc caccaccaga acgagctttt tgtcctttat gaccgcgtcc
    16561 tgaagttttg ccgttaccag agcctgttcc acgaccaaca cgattacgtt ctttacgaga
    16621 accttctgaa ggcttaagtt catgtagttt catgtcaagc acctcctcct atttaacaaa
    16681 ttctatccat tgcataataa ttttaagctt aaacttcttt gacgtccact aaatgactta
    16741 ctttagtgat catcccacga attgcaggat tatcttcttt aaccactaca gaatttgttt
    16801 taccaagacc taatgcttga acagttttgc gttgtggttg agggcgtccg attaagctac
    16861 gttttagagt aatttctaac ttcgccataa tgataattcc ctccttatcc taacaattct
    16921 tctactgttt tgccacgaag tttcgcaaca tcttcagcgt ttttcagttg tttaattccg
    16981 tcgattgtag cacgtaccat gttaattggt gtattagatc caagcgattt ggaagataca
    17041 tcagcaacac cggcaagttc taggaccgca cgaacgggac caccagcagt tacaccagaa
    17101 ccggcactag ctggtttaag aagaatttcc ccgccaccaa aatgtccgac tacagtgtgt
    17161 ggaatagttg tgtctacagt tggtacaagc accatgttct ttttagcatc ctcaacagct
    17221 ttacggatag catctggaac ttcttgcgct ttaccagtac cgaaaccaac atgaccattt
    17281 ttgtctccaa caacaacaag tgctgtgaaa cggaaacgac gtccaccttt aactacttta
    17341 gcaacacggt tgattgtaac aacgcgttct tctaaatcta atttgtttcc atcaatttgc
    17401 tcaggcatgt aatatgtccc tccttcttat taaaattcta gtccattttc gcgagctgct
    17461 tcagcaagag ctttcacgcg gccatgatat aagtatcctc cacggtcaaa agtgacagaa
    17521 gtaatacctt tttcggaagc acgtttagca actagttcgc caactttgct tgctgcatca
    17581 actttggatt cagcagaacc gaaatcttta tctaaattag acgcacttgc aagtgtcaca
    17641 ccatttacat catcaataat ttgagcataa atgtttttgt ttgaacggaa tacgtttaaa
    17701 cgtggacgac tttcagttcc agaaatctta gaacgaacac gagcatgtct ttttttacgt
    17761 actttatttt tgtcgatttt ggtaatcaca cgactcacct cttctctcat ttgcctaatt
    17821 aagcggcatt atttaccagt tttaccttct ttacggcgta catgttcgcc ttcgtaacga
    17881 atacctttac ctttatatgg ctctggtgga cgtacggcac gaatgtttgc agctaactcg
    17941 ccaacgtgtt ctttgttgta tcctttaaca atcacttgtg tgtttgcagg aacttcaata
    18001 tctacgcctt taggagcaac aaactctact ggatgagagt accctacgtt aagaacaagc
    18061 ttgtcgcctt gtttttgcgc acggtaacca acaccgataa gttctaattt cttttcataa
    18121 ccctcggaaa ctccgacaac catgttatta agaatagcac gagttgtacc atgaagtgca
    18181 cggtggtttt tattatcagt cgggcgagaa acgttaattt cgttgccttc aatattaata
    18241 gtaatttctg ggttgaactc ttttacaagt tcacctttag gacctttaac tgttgctgtt
    18301 gatccattaa gtgtaactgt tacacctgca ggaatcacaa tagttttttt acctatacgg
    18361 gacatttatt gcacctcctt atggtttact ttttcttacc aaacgtatgc tagtacttct
    18421 ccgccgactt gtttagcacg ggcttctttg tcggttaaaa cgccttggga agtagacacg
    18481 attgcgatac ctagaccgtt aagtacttta ggcacctcag ttgattttgc atatacacgt
    18541 aaacctggct tactaatacg tttcaaacca gtgattacac gttcgccagt cgctccatat
    18601 tttaagaaaa cacggattgt tccagcattg tcatcttcaa tatattcaac gtcacggata
    18661 aaaccttcac gcttcaatat ttcagcaatt tcttttttga ttttggatgc aggcagttct
    18721 aatttatcat gtttaaccat gtttgcatta cgaatgcgag ttagaaaatc tgcaattgga
    18781 tctgtcatca ccatgtataa taccctcctt ccttaaactc tttcttacca gcttgctttt
    18841 ttcacgccgg gaatttgacc tttataggca agttcacgga aacaaatacg gcataattta
    18901 aatttgcgaa taacggaatg tggacgacca caacgttcac aacgagtata tgcttgaaca
    18961 gcgtattttg gtgtacgttt ttgcttcgcg atcatggatt tcttagccac gttttcgcct
    19021 ccctactaaa attagttttg attacttttg aaatggcatc cctagttgag ttagtaactc
    19081 atgagattct tcatcacttt tggcagttgt aacgattact acgtccatac cgcgtacttt
    19141 tgatacttga tcgtaatcaa tttcagggaa aataagttgc tctctaacac ccaacgtata
    19201 gttaccacga ccatcgaaag cttttttcga tacgccacgg aaatcacgaa cacgtggaag
    19261 tgaaacagta actaatttat ctaagaaatc atacatgcgt tcaccacgca aagttacttt
    19321 agcaccgatt ggcattcctt cacgaagacg gaaaccagcg atagaatttt ttgcttttgt
    19381 gattacaggt ttttgaccag tgataagagc taactcctca actgcactgt ctaaaacttt
    19441 cgcatttgct gtagcgtcac caacaccagt gttgattacg attttatcta tttttggaac
    19501 ctccattacg gagtcataat tgaatttgct cattaaagca ggaacaattt ccttaagata
    19561 ttgatcttta aggcgattca tgtaatattc cctccttcct acgactatta tttatctatt
    19621 acttcaccgg atttttttgc tacgcgtact tttttatcgc ctttaacttc gtatcctaca
    19681 cgagtaggtt cgcctgtttt agggtcaatt agcattacgt ttgaaacgtg gattggtgct
    19741 tcaacattca agattccgcc ttgcgggttg atgttggaag gttttgtatg ttttttaacc
    19801 atattgattc cttcgataag tacgcggtcc tttttcggaa atgctgcgag cactttgccg
    19861 gatttgcctt tatctttacc agtaataact tttactttat cacctttttt gacatgcatt
    19921 ggtatagcac ctccttgatt tcttggaact tattttttaa agaacttctg gagctaaaga
    19981 aacgatcttc ataaagttgt tttcacgaag ttcgcgagca acaggtccaa aaatacgtgt
    20041 tccacgagga cttttatcgt cacggataat gacacatgca ttttcatcaa acttgatgta
    20101 agaaccgtct tgacgacgtg ctccactctt agtacgaacg attactgctt taacaacttc
    20161 accttttttg acaacgccgc ctggtgttgc ttgtttaacg gtacacacga caacatcgcc
    20221 aatgttagca gttttgcgtc ctgatccacc tagtacttta atagttaaca cttcacgagc
    20281 accagagtta tcagccactt tcatacgact ttcttgttga atcattagga caccctcctt
    20341 ccagaataac gggtcggaaa aattgcactc ggcaactttt cacaatctat ttttaacttt
    20401 tgatttagat aattactgct tcttctacaa cttctagtaa acggaaatgt ttagttgcag
    20461 acaatggacg agtttcggaa atacgaacta catcgccagt ttttgcaatg ttattttcat
    20521 catgcgcttt gaatttttta gaatacttca cgcgtttacc gtacaaacca tgtttcttgt
    20581 acgtttcaac aaccacggta attgttttat ccattttgtc ggatacaaca cgaccagtat
    20641 aaactttacg ttggttacgg tcagccatgt attaaaacct ccttacgatt cttttttaag
    20701 caagttctct ttctcgaacg attgttttca tacgggcaat tgctttacga acctcacgaa
    20761 tacgtgcggt gttttctaat tgaccagtag ctaattgaaa gcgcaggttg aagagctctt
    20821 ctttcaaagc tttttcttga tcttggattt cggtagtgga taaatcacgg atatcattag
    20881 ctttcatttg cttcaccacc aatttcttca cgtttaacga tcttagtttt gaccggcagt
    20941 ttgtgtgctg ctagacgtaa tgcttcacgc gctacatctt caggaacacc tgcgatttca
    21001 aacataattt tgccacgttt gactgggctt acccaacctt ccggagcacc tttaccttta
    21061 cccatccgaa ccccgattgg tttagaagtg taagatttat gagggaaaat tttaatccaa
    21121 actttaccgc cacgtttcat gtaacgagtc attgcgatac gagctgcttc gatttgacgg
    21181 tttgtaatcc aagaagcttc aactgcttga agaccgtatt caccaaatgc aacttcagtt
    21241 ccgcctttcg cgcgtccacg catgtttccg cggaattcac gacggtattt tacacgttta
    21301 ggaactaaca ttattatttt cctccttcca cattgttttt cttcgtagga aggacttcac
    21361 cgcggtagat ccagacttta acgcctagtt taccataagt tgtgtcagct tcttcccatg
    21421 cgtagtcgat gtcggcacgc aatgtatgaa gaggtactgt tccttcgcta tagtgttcag
    21481 cacgagcgat atccgctccg ccaagacgac cagatacttg agttttgata ccttttgctc
    21541 cagcacgcat agtacgttgg atagcttgtt tttgcgcacg acggaaagat acacgacctt
    21601 ccaattgacg agcgatattt tcagcaacca attttgcgtc taggtcagca cgtttgattt
    21661 ctacgatatt gatatgaaca cgtttttgag taagttcgtt caagtttttg cgtaatgctt
    21721 caacttcaga accaccttta ccgataacca taccaggttt tgcagtatga atagtgatat
    21781 tcacacggtt agctgcacgt tcgatttcta cacgagaaac agaagcgtca gatagacgtt
    21841 ttgcaacgta atcacggatg cgtaaatctt catgtaagaa gtccgcataa tctttttccg
    21901 cgtaccattt ggagtcccaa tcacggatga caccgatacg catacctatt ggatgtactt
    21961 tttgacccac gaattatccc tccttcactt cagataccac aactgtgatg tggctagtac
    22021 gtttgttgat tgcacttgca cgaccttgtg cacgtggacg gaaacgttta agtgttggac
    22081 cttcgtcaac aaatgcttcc tctactacaa ggttgttaat gtctaaatca tagttatgct
    22141 ctgcgttagc aatagcagat tttaatactt tttcaataat tggggaagct gatcttggag
    22201 tatacttcaa gattgcaatt gcttcgccaa cttgcttgcc tcgaattaaa tcaatgacga
    22261 ttctagcttt gcgaggagca atacgaaccg ttttggcaac ggcttttgcg cttgtaactt
    22321 cacttgccat taggatatcc tcctctcaaa ttagcgttta gtttttttat cgtcgcccgc
    22381 atgaccgcgg tacgtacgag ttggtgcgaa ttcgcccagt ttgtgtccta ccatatcttc
    22441 ttgaacataa acaggaacgt gtttacgtcc atcatatact gcgattgttt gtccaacaaa
    22501 agttgggaaa atcgtggagc gacgagacca agttttaatt acttgtttct tttcgctttc
    22561 tgctgctgct tccactttct tcatcaagtg gtcatcaaca aaaggtcctt ttttcaaact
    22621 acgacccatg acggaacctc ccttcgcata gtcaggaagc tgagaacgca tgtcctcgct
    22681 atcctgctac caattttatt caatctattg atccgattat tttttcttac gacgacgtac
    22741 gataaattta tcggagttgt tgtttttctt acgtgttttg tatccaagag ttggtttacc
    22801 ccatggagac attggcgatt tacggccgat tggagcttta ccttcaccac caccgtgtgg
    22861 gtgatcgttc gggttcatta cagatccacg aacagttggg cgtttaccca tccaacgtga
    22921 acgacctgct ttaccgatgt tgataagttc gtgttgttcg ttaccaactt gaccgattgt
    22981 agcacggcaa gtagcaagaa tcatgcgaac ttcaccagag tttaagcgga ttaatacgta
    23041 tttaccttct ttaccaagca cttgagcact tgttccagca gaacgtacta attgtccacc
    23101 tttaccaggt ttcatttcga tattgtggat aacagtaccc actggaatat cttttaattc
    23161 tagtgcatta ccgactttga tatcagcttc tgctcctgaa taaattgttt gacctacttc
    23221 aaggcctttt gctgcgatga tgtagcgttt ttctccatca gcatagttga ttagagcaat
    23281 attagcagaa cggtttggat cgtactcgat cgttgcaacg cgtccaggaa taccatcttt
    23341 gttacgtttg aaatcaatca cgcggtattg gcgtttatgg ccaccgccgt gatgacgaac
    23401 agttaactta ccttggttat tgcgtccggc tttcttttta agaggacgta gtaaagattt
    23461 ttctggagta cttgtagtaa tctcagcgaa atcagaacta gtcatgtgcc ggcgcccgtt
    23521 agtggtaggt ttatactttt tgatcgccat tgtttcccct cctcgttaga tttatttaaa
    23581 gttagtcgaa ttatacttca aagaattgaa tttctttgct gtcagctgta acagtaacaa
    23641 tcgctttacg gcgtttgtta gtgtaacctg cataacggcc catacgttta agtttgcctt
    23701 tgtaattcat tacgtttact ttagcaactt ttacgtcgaa aatttcttca actgcgtatt
    23761 ttacttgcgt tttagttgcg cgagtatcta cttcaaatgt atatttctta tcgtcgagaa
    23821 tacttgtaga ttcttcagtt acaactgggc gcttaatgat gtcgcgtgca tccattatgc
    23881 gagcacctcc tctacttttt cgacagctgc tttagtgata attaatttat catgtttagc
    23941 aacttctagt actgagatac tttcagctgg aataactgta atgccttgta agttgcgtgc
    24001 agataattct acattttcac tttcaccggc aactacgatt agtgccttag tatctacaga
    24061 gatattttta agaaaagccg caaattcttt tgttttaggt gcatcgaaag tcaaaccttc
    24121 aagtacaact aatttttctt catttacttt agaagaaaga attgatttaa tcgctaaacg
    24181 acgaactttc ttaggtaatt tgtatgcata tgaacgaggt gttgggccga atacgacacc
    24241 accgccacgc cattgcgggg aacggattga accttgacgg gcacgacctg tacctttttg
    24301 acgccatggt ttacgtccgc caccacgtac ttctgaacga ttttttactt tgtgagtccc
    24361 ttgacgtagg gatgcacgtt ggctcaaaat cacatcaaca acaacttttt catttggttc
    24421 gataccgaaa acagtgtcgt ttaaagtaat ttcgccagcg tttgttccat cttgtttaag
    24481 taagcttaat tttggcattc gttagtcctc ctttccaaat gaattatttt gctttagtag
    24541 cagttttaat ttgaactaat gcttttttag cgcctggaac gttacctttt actaaaagaa
    24601 cgttcttttc aacgtctact ttaacgattt ctaggttttg gatagtgatt tgttctccac
    24661 ccatacgacc tggaagtagt ttatttttga aaacacggtt aggtgctact ggacccattg
    24721 aacctgggcg acgatggtaa cgggaaccgt gggccatagg gccgcgtgat tgtccgtggc
    24781 gtttaataac accttggaat cctttacctt tcgatacgcc tgtcgcgtcg atgatgtcac
    24841 cttctgcgaa tacgtctact tttacttctg caccaatctc atactcgtct aagtttacat
    24901 cgcggaattc gcgaatgaag cgcttaggag tagtattggc ttttgctaca tgaccttgtt
    24961 cgggtttgtt tgacaaaatt gctctcttat cttcgaaacc gatttgtaca gcttcatagc
    25021 cgtcagtttc aacagttttc ttttgaagta ccacgttttg tgctgcttcg attactgtta
    25081 ctggaataag ttcgccgttt tcagtgaaaa cttgtgtcat ccctactttt ctacctaaga
    25141 ttcctttggt catgagtcac acctcctgtt aatttaatat attcttatta tagtttgatt
    25201 tcgatgtcca caccgcttgg caagtctaaa cgcatcaagc tatcaactgt ttgtggtgtt
    25261 ggattaacga tgtcgattaa acgtttgtgt gtacgcattt cgaattgctc acgagagtct
    25321 ttatatttgt ggaccgcacg caagactgtg tagattgact tctctgttgg aagtgggatc
    25381 ggaccagata cagaagcacc tgagcgtttc gctgtttcta caatcttttc tgctgattga
    25441 tccaaaatac ggtgatcata agcttttaaa cgaatacgaa ttttttgttt tgccattact
    25501 ttccctcctt ttcgcctact tttaaagtag acattctccg tgaaaattac ctgaacatcc
    25561 gccatggcaa agcggccggg tgtgtcagca acctttcact tcatcacatg ggcattcccg
    25621 gcaataccgg ggtgctcgtt gtcaaaaggg cagaccaatg cctgtccatt tgcactttat
    25681 ctattataca cgggttaggg atagtaatca accgcttttt gaaaaaagtt ttaagttatt
    25741 ttcataggaa ctattatata gaagattctc ggttttggtt tatcttcaaa ctgtctgaca
    25801 gagccattct gctcatttta tccaaaagaa aaaaacatcc gttaatatcg aatgttttta
    25861 agatgttctt agtattacga gtcccgcggt taaaagtatc attacacatg ccgcaatcaa
    25921 atctccaaaa tgccaatgca atattcggaa tctcgtgcgc ccttcgcctc cttgataccc
    25981 tctcgcttcc attgcatccg ctaattcttc cgctcggtta aacgaactaa caaataacgg
    26041 aataaaaatc gggacaacaa ctttcatttg ttcgaaaaga ttaccttcac caaaatccac
    26101 tccgcgagct cgctgcgctt tcataatttt atctgtttct cccataaggg ttggaataaa
    26161 gcgaagtgcc accgaaatca ttaatgcaat gtcattcacc ggcactttga gtacagcaaa
    26221 cggacgaagg atgtaagcaa ttgcgtctgt caggttcata ggcgtcgttg tgagcgtgat
    26281 aacggtcgac atcatgataa ttaagacaaa gcgcaaaaac acaaataccc cgttcaaaag
    26341 cccaaatgaa gagattgtaa atggacccca atcaaaataa atcgttccgc cactcgcaaa
    26401 tagtatttgc attactactg taaataaaat tagccaaata agtggtttta caccttttat
    26461 aaacactttt aacttgatac ctgtcatttg aatgaccatg agtgtgaaca aaaccattaa
    26521 ggcgtatgtc caccagttat tcgctaaaaa taaaatgccg atataataaa agcctgctaa
    26581 aagtttcgtt cgcgcatcca gaccatgaat taaggactcc cctgggacaa aacgacctaa
    26641 tattagtttt tcaatcattc aaagaagccc ccttttcttt acgccagttg ttgaagtacc
    26701 acgctcaccg ccattaaaat tgtcaatgtc gcattaatta atacgaaatt acgaatacca
    26761 ataacaaatg tttttgattt tacttgttct ttattgaatt taactagatt acgatacact
    26821 ggatagattg ttattagtga tagtaacatg attggatgta agaagtttat agctaccgaa
    26881 acaaccacag ctaaaaatga agcataatat aaagcattaa ataataagac tcccattttt
    26941 cttcctatat aatacggaag tgtgtaacga tgattccgaa tatcttcatc taaatcacag
    27001 agattattcg cgagcatgat attagctatt gtgaaaatac aaggtaagga taccacacct
    27061 atccgaataa tttctattag attgaactgg attgtcaccg tttctccttg ccaaagtaaa
    27121 ttcgctattc ccgcgtcgta tgcatttaca tatacagcta agaagaaaat cccaaacccc
    27181 atcgttacgc ctgaaaaaat ttcacctaac ggcatacgag aaagcggtac aggaccgaat
    27241 gtatataaga tgcctataca aaagcagaca aatccaatta agagcactaa aagatctgtt
    27301 cgaaaaacta accaaacacc taatcctgta gcaatgaaga acatcaagaa aatagttata
    27361 ataactgttc gcaccggaat ttgctcttgc ccaattacat tgctggtagt tcgataatcg
    27421 taatcatgat tgtctgttgc tttgcggtaa tccatatagt tattaatcgc tgttgtagtc
    27481 aagtcgaata tgagcataga tccgaaaaat atcaacgtat taacaggttt gaacatatca
    27541 tattgataca caacaaatag cgttcctaac ataaacggaa aaacactagc tatcttcgtt
    27601 tggatttcaa ccaacttcag aaacgatggt attgacatat ccccttttta gccccttttc
    27661 tagtttattg tgagcagaat ccagagcgaa ttctgctcac tttcttctat aataatagtt
    27721 tattttttta gcgtgtccat ctggaagtct ttatccgtta attcgaattg accttttaag
    27781 ccagaagttt cgtatacttt tttctcttta ctgatgaaaa tagcatctac accttcaaat
    27841 tgttcaatgt agtccatgcc acctttaacc cctttggaga aagtagcggt ggatagaccg
    27901 tcgccatcaa ttgatttttt agatacaatc gaaactccag cgatatcatt gtcaaacgga
    27961 tatcctgttt tcgggtctaa gatgtgatga tatgttttac catccacttc aaggtaacgt
    28021 tcataaatac cagaagttac gatagacata ttagattcag gaagtttccc aataacactt
    28081 ccacgcggag aaaacggatc ttgaattccg acattccatt tgttgccatt cgggttgttg
    28141 ccttgaacat aaatgtttcc acctaaatct atgatagagg ttgttacttt attttctttg
    28201 aataccttta aagtctcgtc agtaatgaag cctttagcaa ttgcccctaa atctagttcc
    28261 ataccttctt tttccaagta tactgtttgg tctttatcat tcattttaac gtctttgtaa
    28321 ttaattaatg gtaacaccgc gtcaatttct gcttgagaag gtttgcgcgc atcagaaaaa
    28381 ccgatgtgcc atagagatgt taacggccca atagtaatat cgaagctacc accagagttc
    28441 tcggagtatt taagcccttc ttgaattaag tagtatacat ctttagatac tttcactggt
    28501 tttttgccgg cttgttcgtt gattttatcc acttcagacg ttttttccga atcacttgtg
    28561 gtaatcttgg cagctagatc tttgattcga tcgaagcctt tatcaagcac gtcttctttg
    28621 cctttatcat aaattttaag cgttactact gtgcccatta gaaagtctgt tttggagtat
    28681 ggttgatcca ttagtttttt tgaatcactt ggttcactct ttgtttcttt actagaattt
    28741 ccacacgctg atacaacaag cgccaatatg ataactgaaa ttattatttt ccatttcttc
    28801 attagctttt tcacctttct aaatccgtga tctttacttg aataactata gcgtaaaaaa
    28861 aggaataaat ctacagtaaa aaggcttaat tcctctgttt ttcgataaaa aaatcggcta
    28921 gccctagaaa ttaggaccag ccgttttgta cataaatttc gctaattatt cagcttctac
    28981 taggttgtac actttaattg tgtcagtgtt accattttgt gcagcatttt gaagttgagc
    29041 tgcgtagatt ttgaattggt tagaagagtt agtagcacca gaaacagtgt ctactgcagc
    29101 aacgtcttgt ttttcaacaa gagatttgtt aagtgctggg atgtattctt ttggaccagt
    29161 accagattta gctttcatgt ttttctcgta gtcagcatcg tctgatttaa gtttgccgtc
    29221 tttgtcaaca tagttgtagt cagatttagt gattttgcca tctttaacat ccatgctgaa
    29281 tactacacgg taaccatgtg cgtaattttg ttcttcaagt ttataagttc catcttccat
    29341 tttagctaag ttgttgatgg aaattgtagt tgtatcagct ttttgagctg cttggattaa
    29401 ttggttagca tagttgatga aagcgtcaga agaatgagtt gctcctgaaa ctacttctac
    29461 agatgctgca gattgatttt taactaaaga atcgcttaat tgtttcaagt attcttgagg
    29521 accagttcct actttatctt tcattgcttt ttcgtagtct gcatcttcag attttaattt
    29581 gccatctttg tttttgtaat cgtagttagc ttttgtaatt ttaccatctt taacttcgat
    29641 tgacatgaaa cctttccagc ctttgtcgtc gaaattcttt tcttctaatt tgtaagtacc
    29701 atcagtcata gtaccatcag ttttagctgt tttctttgtt tctgtttgtt ttgtgtctgt
    29761 gctctttttg tctttgctgc tgtcgtcact gctaccgcaa cctactagta ataaacttga
    29821 agccattacc acggtaatac ccattgctac ttttttcaat ttcatgtttt gctcccacct
    29881 tttgttttat tgattaactt tgtttgtgat ttcgtgaaca caaaccgata gtctgcgaaa
    29941 gcgatatcac ttttacaata caaatgatac catcagcgcc cggttttgtc tactgtaatt
    30001 ctaaagacat aattcatcta attttcaaaa taatgactat tggtatatat ataacagtta
    30061 aagccaacct tttctagcaa aatagcaaac aaaaatgtct aacatcctat gttaaacaag
    30121 gacttttagc ctgcttaatt atgtaacatt tgcacaaagt cctatttttc aaatttagat
    30181 tagaattgtt ctttactatc tagacattag taggaggttt ctgttaaact atgataggtt
    30241 ataataatac tgtggggaat tttggactca ttttattttt gtgaataaac ttacaaggag
    30301 ttgaggaagc atatgcctga aaagaatatc gttttaattg gggcaggata tgcaggtgta
    30361 cacgctgcta agaaattagc taag
//
LOCUS       DASEAA010000015        29936 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.015, whole genome shotgun sequence.
ACCESSION   DASEAA010000015 DASEAA010000000
VERSION     DASEAA010000015.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 29936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29936
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.015"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            99..1115
                     /locus_tag="U0342_000577"
     CDS             99..1115
                     /locus_tag="U0342_000577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tagatose-bisphosphate aldolase"
                     /protein_id="HEM2421938.1"
                     /translation="MVQITKGKFDGLQRLSNEKGVIAALAIDQRGSLKKMIQQAKGTE
                     NKKDVEDFKQLVSEELTPYASAILLDLEYGTPAIKARHEGSGLLTSYEKTGYDATTPG
                     KLPDLIEDLSALRIKENGGDAVKILVYYDPDEPAEINEIKYAFLERIGAECRAVDIPF
                     FLEPITYDATVTDSGSLEYAKLKPAKVKASIKEFSKPRYGVDVLKLEVPVNFKYVEGF
                     AEGEVAYTQDEAARHFEECSDLSPLPFIYLSAGVTSEMFHKTIQFANQHNVQYSGVLC
                     GRATWADGIEVYGKQGDDALREWLRTQGKENITSLDKLLDEGAVPWWTKYGSFEDVHV
                     VEKQ"
     gene            complement(1163..2338)
                     /locus_tag="U0342_000578"
     CDS             complement(1163..2338)
                     /locus_tag="U0342_000578"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2421939.1"
                     /translation="MNQKIKQAVLNNEEAMIAFRRDLHMHPELQWQEFRTTDKVAKEL
                     DKLGIPYRRTEPTGLIAELKGGKSGKTVALRADMDALPVQELNQDLPYKSTEDGKMHA
                     CGHDAHTAMLITAAKALVEIKDELPGTVRFIFQPSEEIAEGAKAMIAQGAMEGVDHVF
                     GIHIWSQTPSGKISCVVGSTFASADIIQIDFKGQGGHGAMPHDTIDAAVIASSFVMNL
                     QSIVSRETDPLDPVVVTIGKMDVGTRYNVIAENARLEGTLRCFNNITRAKVAKSIEHY
                     AKQTAAIYGGKAEMIYKQGTQPVINDEKSALLVQETITESFGEEMLYFERPTTGGEDF
                     SYFQDEAPGSFALVGCGNPEKDTEWAHHHGRFNIDESVMKNGAELYAQFAYNYLNQN"
     gene            complement(2304..3575)
                     /locus_tag="U0342_000579"
     CDS             complement(2304..3575)
                     /locus_tag="U0342_000579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Zn-dependent hydrolase"
                     /protein_id="HEM2421940.1"
                     /translation="MQTNLERIKKHIEKLDTYTATPGQGTTRLTYSKEDLDARNYLKQ
                     EMAKVGLAVSEDAIGNIYGRLEGENPKLPAVIVGSHFDSVPNGGAFDGPAGVITGLEV
                     ATVFYEQQIKPHFPLEIIAMVEEEGARFGAGLLASRTITGKVTKEMLHEMKDIDGITA
                     AEAMAKVGFDANQVVTAIRTKESVKAFIELHIEQGPVLENANEDVALVDTVVGLTEIK
                     VTVKGQAGHAGTTPMLDRKDALITAVEILGQLPELAIQEGGGTVLTVGKLNVYPNGAN
                     VIPDKVVFTVDIRAKDEIHVQNTLAKTKEIIQSAEKNGITCEIEDMLYEPPTHLSKEI
                     HQALTESADQLGLKYRTMVSGAGHDAMIFASLTEVGLIFVPSHNGISHAPEEWTDYDK
                     LQKGIEVVLKTVKKWTEESANESENKTSSFK"
     gene            complement(3679..5001)
                     /locus_tag="U0342_000580"
     CDS             complement(3679..5001)
                     /locus_tag="U0342_000580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM2421941.1"
                     /translation="MKKGVKIVTIGGGSSYTPELVEGFIKRYHELPIRELWLVDIEAG
                     REKLEIVGNMAKRMVKAANIDCEVHLTLDRREALKDADFVTTQFRVGLLDARIKDERI
                     PLSHGIIGQETNGAGGMFKAFRTIPVILGIVEDMRELCPDAWLINFTNPAGMVTEAVL
                     RYGNWDKVIGLCNVPIGAVKSASDVLEKPEEDLFFKFAGINHLHWHRVFDKDGTELTE
                     KVIDGLYAPDANPGKVVENIKNMRFLYEQVKHLKMLPCPYHRYYYMTDAMLEEELASF
                     KNEGTRGEVVKKLEDSLFELYKDPNLDYKPEELSKRGGAHYSDAACEIINSIYNNKGT
                     VMVVSTRNNGAIDDVPYDSAVEITSVIRAHGAEPINFGKFPPAQRGLLQVMKSMEELT
                     IEAAVTGDYATALQAFTSNPLVPSGDLAKTILDEMLEAHKEFLPQFAK"
     gene            5173..6141
                     /locus_tag="U0342_000581"
     CDS             5173..6141
                     /locus_tag="U0342_000581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2421942.1"
                     /translation="MANIQEIAKLAGVSSATVSRVINKRDYVSDETRKRVQTIIDQLD
                     YVPNINAVSLKKGATKLIGMVIPSFTDSLNVFLKSFTMIAQEHGYNVTLFMTRIDPDK
                     ELEALEMLRQKQIDALVLVIRSNDWKTIEHYTKYGPIVTWQRVESEKIPSVFMNQYDG
                     YTLALEHLYAKGYRKFVNVYGNTTGLNTQSRMLAFKDFCARYELDPHEFRQFYGQGSR
                     QDGEKIAHWFAETEHKPDAFLTPNDYFAAGLLTEARRLGYSVPEDFAICGFDNMEIAH
                     LLDITTIHYPVNLQAENAFTLIMNQLFGSNLPLLDLDFHLVERKTT"
     gene            complement(6181..7536)
                     /locus_tag="U0342_000582"
     CDS             complement(6181..7536)
                     /locus_tag="U0342_000582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PFL family protein"
                     /protein_id="HEM2421943.1"
                     /translation="METNQILETIRMIEEEKLDIRTITMGISLLDCMDGDGEVARKKI
                     YQKIVTKARNLVAVGEAIESEFGIPIINKRISVTPIAIIAGSSADTDYVEFAKTLDAA
                     AKEVGVNFIGGYSALVQKGYTKGDEILIRSIPQALAQTERVCSSVNVGSTRTGINMDA
                     VRQMGEVIKETADLTADTQGLGCAKLVVFANAVEDNPFMAGAFHGVGEADCVINVGVS
                     GPGVVKRAIEKVKGEPFDIVAETVKQTAFKITRMGQLVGQVASEKLGVPFGIVDLSLA
                     PTPAIGDSVAHILEEMGLEMVGTHGTTAALALLNDAVKKGGVMACGHVGGLSGAFIPV
                     SEDAGMIEAVQQGALNLEKLEAMTAICSVGLDMIAVPGDTTAETLAAMIADEAAIGVI
                     NNKTTAVRVIPASGTKVGDMVEFGGLLGTAPVMPVNGKSSVDFIARGGRIPAPIHSFK
                     N"
     gene            complement(7555..7824)
                     /locus_tag="U0342_000583"
     CDS             complement(7555..7824)
                     /locus_tag="U0342_000583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACT domain-containing protein"
                     /protein_id="HEM2421944.1"
                     /translation="MRAVLTVIGKDNVGIVAGVSNKLAELNINIVDVSQTIMDGYFTM
                     MMMCDISQITKEFDEVKAELAGKGEDLQVKIHIQREEIFNAMHKL"
     gene            complement(7902..8732)
                     /locus_tag="U0342_000584"
     CDS             complement(7902..8732)
                     /locus_tag="U0342_000584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2421945.1"
                     /translation="MNLEEIVDCMLLNENDKEIQRTQTEHRIKLVDFWQVKNGDRVLE
                     VGCGQGDTTAVLANAVGASGFVQGIDIAPRTYGAPFTIGDATDHLQKSKLGAQIDFKL
                     GTDILNGDITFPENAFDVAVLSHASWYFSSKSELTMMLELLSKWAKRVCYAEWDTRIT
                     DVKQTSHMLAVLTQSSYEAFKQDTQSNIRTFITPIDMQEIIQEHNWKMGAETSIFSEK
                     MQDSRWEIGYVKDFITKELEADLGLPEKFKAFLLSQSKLITLENSLPMASYCTSWQVK
                     "
     gene            complement(8792..9646)
                     /locus_tag="U0342_000585"
     CDS             complement(8792..9646)
                     /locus_tag="U0342_000585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GGDEF domain-containing protein"
                     /protein_id="HEM2421946.1"
                     /translation="MKKITNNLFADIGFLFFILLCFITIGFMINTPDEYLRNIILLNI
                     TFLLVIITYFTNLTLGLILNVLYIFIYATYIIYEIVANQIAYGFGSYFWLIITPLFTV
                     ASAMFTRNTSRLQEENTKIKQQNLYLGTIDQETLLKNIVSFQNDERIFSSISRRYDLP
                     LSLMVIKVRHWRELKRFQSEEEMRLALQDISAILETCIRTSDVLYLLDKDDATWGLLL
                     LTDEPGGKLVADRIKSRIAEANTEEFAAKYRVKLELRIGTSQFDSEKVKTPLDFIDLA
                     TKELEYDV"
     gene            complement(9661..11712)
                     /locus_tag="U0342_000586"
     CDS             complement(9661..11712)
                     /locus_tag="U0342_000586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cellulose biosynthesis cyclic di-GMP-binding
                     regulatory protein BcsB"
                     /protein_id="HEM2421947.1"
                     /translation="MKKLTVIGLLMFAVLFLYRPDVLAADKNYQTVFGTDKTAQGKFT
                     TTKQNFTVENYWDVSNANVKLVYTITQLSEKEVSTMTLKINDVAFYSFKPDKADKGTK
                     QIEIQIPKDKLKKGVNVLSIESFVYTDLPDGRCTIDDTPANWLQFDKTSAVNVSYSDK
                     AFQKTIAEFGERFTGIDIVKSEQGAVAVSNKAGDAELGAALEGLSGFSAANTLEDKNI
                     AFGQYEEAKTRDGKNYLVLFSSYDNLPNDLKSQIKDDNKLEKQALFQVVTVGNTNTLV
                     VTSKSNDALKKAGKLIANQNYLSQLGTNTKWLTTDEKIDTPATNVDKNTKLTTTGDKL
                     KGIGHITQDYFISMPANRSASTGTEVSLDFRYAQNLDFEHSLVTILVNGKPIGSQKLT
                     AKKANGDKLTFQIPSDLNVKGDFSVTVAFDLVLTNNYCGFIADSEIPWAYITPESKIN
                     LNTSEETDLLFEQYPYPFIANGDFNNAVVVVPDKLTTEDTDSLANIFNLLGRFHDGNR
                     GDLTAVHAANWKKPKEGSNIVAVGTMNNNPVIKNANDDLYFQYNKTGDYFLSNEKISI
                     EKNYGKQLGSVQLITSDGVPILAVTGPGAKQTELGSDLIATKANLAKIYGDGAIVDTD
                     NTIHSYRFKKAADTQEESFGSKISNNKEVTVFGAFALLTVVILVVAVLLILRKYRRSR
                     K"
     gene            complement(11728..12978)
                     /locus_tag="U0342_000587"
     CDS             complement(11728..12978)
                     /locus_tag="U0342_000587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM2421948.1"
                     /translation="MVIADYLALFAVVCIWGLLLINIVLIVAGYVYYLKNEARKVPEI
                     PAEVPFVSVMVPAHNEGKVIVKTVESLLAFDYPVDRYEIIVINDNSSDNSAELLAAIQ
                     AKNPTRFLKIINTDNITGGKGKSNALNIGFAESRGELVAIYDADNTPERQALRILVGE
                     ITNDAKLGAVIGKFRTRNRNASWLTRFINIETLSFQWMAQAGRWALFKLCTIPGTNFI
                     VRRSLLEEIGGWDVKAVAEDTEISFRIYMMGYRIKFQAKAVTWEQEPQTLPVWFKQRS
                     RWAKGNIYVILKNVPLLFKREGRRVRFDILYFLSIYFLLLTSLIVSDVLLVLYALGLV
                     HTTLAGLSGALWLLAILLFVAGTFITLTTEKGEISFSNLLFIMLMYVTYCQLWMVVAA
                     YGFFIFLKDTVLKRETKWYKTERF"
     gene            complement(12989..14485)
                     /locus_tag="U0342_000588"
     CDS             complement(12989..14485)
                     /locus_tag="U0342_000588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421949.1"
                     /translation="MRKKLIVSILLAFMIFVVGGHSAIAKTDDGVVVFYDSLATGTEN
                     EGNMDALLRMLNSLGKRVTIYSWEENPDLSQTSEIIVLQNKKDGLASDWTEKLAKSKA
                     KIAYIGGNPPTFLTDKLQLKTKAITEASITIQTQAGLSGKPQLVNETNLITSYKGTSF
                     GEMDAAENGQAAYGVQAGNYAYAPLFQADNTSEFALMDVLKALFDIKTTTNQYAFITG
                     VNPFIDFDLLKKTADTFYEKGIPFIVSAGPVFYNQDFQAAKNYAEILRYVQAKNGTIM
                     MNVPAVTYGDSPAGELEKIMQKSVHFFAENDVAPLGVTAELYWNFDKVYGVEGFAPFN
                     TGILLPNQKIIHTTKVNNGSAFEKSPYSVANDFYATTTEGRTFPVDIAITYPFFDNEK
                     ELKAAAEELANDNISDFRFQDHGVKTNKDTIESSAGSLYINNQSVTLDGDLNYIKTKN
                     KTVKQAGSLEGFFGYQNTFFTIVIVLSLGIIGVLFVFGYRLYMKKYMK"
     gene            complement(14478..15953)
                     /locus_tag="U0342_000589"
     CDS             complement(14478..15953)
                     /locus_tag="U0342_000589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421950.1"
                     /translation="MIGKVKSISMWLWHHLTPQIFAVICVFIITLIALFVPPYIGMAD
                     NGDFFRIFSSNGLFVNNTNYDALQFGHFVKEFGIYQYFNENQVAIYSSQSIFIQMALL
                     LNKLFWSTTVFDVRFLGGLQLALLLPAIYLLVAGLTAKMKGWPGYVVAALTVFIFADT
                     AYTAYFNSFFSEGLILIMMLYISAGFLLLYQHKYNDYAMLGLIFVASLILITAKQQNA
                     PIAVVIAVCGILVFFIRKNRAFRISAAATFFVIFLSGVVMYAFIPGEFVTINQYQTMT
                     RGVLLDSENPEKSLEEMGMNSEFALLKGTNFYQKYKMIDLDSKLMEKEFYPNYNFVTV
                     LSYYLENPKQFGKMLDLSAQNSFSIRPFEMGNFEKATGYKFKEKTHFFSIYSDVKEKL
                     APAKFTFLILWALVFLICYGVSAFKHFREKNIRGMLLFDLVILLIGSGFAVILVTIVG
                     DGEADLTKHNFLFNVCFDLTMLIGAASLLEVYMKKRGERNA"
     gene            16183..16923
                     /locus_tag="U0342_000590"
     CDS             16183..16923
                     /locus_tag="U0342_000590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2421951.1"
                     /translation="MQIKELAELTGVSVRTLHHYDKIGLLVPQKDDWNGYRIYSENDV
                     DKLQQILFFKELDFPLKKIKQILDDPFFDKNVALDLQRHLLIEKKQRIETMLATLDQT
                     IRNEKGEITMTNKEKFTGFDFSTNPYEEEAKKRWGDKVVEKANEKVNNMSEKEKLTLK
                     ESFDAEFRHLASVRELAPESEEAQLAIDHFFHYLNDTHGNIYSLEAFAGLGEMYVADE
                     RFTKNIDQFGDGLSHFLKEAMNIYAKTK"
     gene            17062..18723
                     /locus_tag="U0342_000591"
     CDS             17062..18723
                     /locus_tag="U0342_000591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SulP family inorganic anion transporter"
                     /protein_id="HEM2421952.1"
                     /translation="MFKHILLSLNGYKISYLRNDVISGVGVAALTIPVAMGYAQVAGL
                     PPIYGLYASFLPVIAYVIFASSPQLVFGIDATASAITGSIILGTAGLAAGSKEAIALA
                     PILAFFCAIFLVLFSVLKLGRFAKYISAPVLSGFISGLSVSIIMGQIPKIMGLKESGD
                     SFFSSLGIIFGQFFQSNWISFAMGVVTVIIVITCKKVIPKIPMSLVVLVLGTMAAYFF
                     KLDQYNVDIVGKIPVGFPSLALPDFGASSWALAIGGGLVCAIATFAGSLLPSESFAMR
                     NKYTIDDNRELFAYGISNFVAAFSGCSPASASVSRTAANEQFRGKTQMVSIVAATIIA
                     LIVAFLSGLLYYMPQPVLSGIVFAALVGIIDVDVLKGLFKVSRREATVWIVAALGTLL
                     VGVIFGVLLGIFLSFINVVSRSMKSPIAILGVIEGRHGYFDLKRKPEAKPIPNVVIYR
                     YSASLFFGNFNKFADGLKEAVQDDTKLVIFEASAIINIDTTATESMKDLLKWLDDKGI
                     EYYFADLIDHLKTSFRKHDLGYIIDNGYTKKTVEDALEAYYAEHK"
     gene            complement(18769..19212)
                     /locus_tag="U0342_000592"
     CDS             complement(18769..19212)
                     /locus_tag="U0342_000592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421953.1"
                     /translation="MYSNRKEKVVFTLIMCSLMILCMSSYNIFLENGIGANSFLIILK
                     AFVPFLFIGFLLDFFVVGKIVYRLHALLVSEDASKFKKIIMMQLLMVTFMCVLMSTLS
                     LIVNQGEWSHLGILILRNYFVALFLQIFIVSPFVRLISPRIFALL"
     gene            complement(19319..20071)
                     /locus_tag="U0342_000593"
     CDS             complement(19319..20071)
                     /locus_tag="U0342_000593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2421954.1"
                     /translation="MLFLDKNLELNDTELDIYNYIVANLDKVVYMRIRDLATEAHVST
                     TTILRFCRKFGCNGFSEFRVKLQLYLEEQKLAQIDMADETTYIDFLKRTAQPEFKAQI
                     QNAVEILRDRELVLFAGVGSSGVIAEYGAIYFSSLFTLALHIEDPLNHPFYHLSSKLS
                     DKICMIAISVEGENEDIIRYIHQLKAQNCKVISITNSAKSTIARLSDANIAYYINKEM
                     YQEANITSQLPALYTIENIAREIRTQIDKEKM"
     gene            20273..21589
                     /locus_tag="U0342_000594"
     CDS             20273..21589
                     /locus_tag="U0342_000594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM2421955.1"
                     /translation="MTKGIKIATIGGGSSYTPELIEGFIKRQDELPVRELWLVDVEAG
                     REKLEIVGNLAKRMVEKAGVDMEVHLTLDREEALKDADFVTTQLRVGLLDARVKDERI
                     PNSYGVVGQETNGPGGMFKGLRTIPVILDICKDMERLCPDAWLINFANPAGMVTEAVL
                     RYSNQKKVVGLCNGPIGIERNIAETLGVDVSEIYVEFVGLNHMVFAKTVYHNGKDVTK
                     DVVFKMTEDEAGSSLKNINATGWDKTFLRTLNMIPIDYLRYYWQTKQQLEDQARAYAE
                     HGTRAEVVKKVEAELFELYKQEELAEKPKQLEQRGGAYYSEAACNLINSIYNDKRDIQ
                     IVNTRNNGAILDIDPDSAVETNCVITRQGPIPLASGRLPIAINGIIQEIKTFERLTAE
                     AAVTGDYDKALLAMTINPLTPSESVAREMLDELLEAHKEYLPNFFK"
     gene            complement(21622..22626)
                     /locus_tag="U0342_000595"
     CDS             complement(21622..22626)
                     /locus_tag="U0342_000595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEM2421956.1"
                     /translation="MAIPRDLKELNKKNIKSILRQQGAMTKAEIAEVTGLSVVTVNKL
                     IRDLVENEEILEQDNSVATGGRRAVSYEINPNFQQVLVISLQEKWKKITYSFSVYNLL
                     GEPEFVEDMSGEDLDITALKRNTKDLVCAFPKISCVVIGVPGIEIGGKLRAMDFPLLL
                     NVQLRETLEAEVNLPVLVETDTNAAILGYKNRPVKEENIVGLYYPERFPPGAGLLMNG
                     EILKGQNGLAGEIKHMPLQVDWDNFDFSVDEIKAHIRKMVLLTMSFYDPETIVLYTNF
                     YFGQKDFTEELTEELKQVYPYAVLPEIVLSRKFTTDYRIGLLAFGIDYLENNMTDWRI
                     "
     gene            complement(22757..24172)
                     /locus_tag="U0342_000596"
     CDS             complement(22757..24172)
                     /locus_tag="U0342_000596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM2421957.1"
                     /translation="MQQEATGGQKIRPIPIIASFLMAGFIGLFSETALNMALSDLIQV
                     FDISSATVQWLTTGYLLTLGILVPISGLLLQWFTTRGLFFTAVSFSIAGTLIAALSPT
                     FAMLMIGRVVQAVGTALLLPLMFNTILLIFPEHKRGSAMGMIGLVIMFAPAVGPTISG
                     LILENLTWNWIFWISLPFLIIALLFGMKFMQNVSVVTKPKIDILSIILSTLGFGGVVF
                     AFSSAGESGWGSATVLVSIIVGGLALGLFVWRQLTMEKPLMDLKVFKYPMFTLGLILV
                     FISFMMILSTMILLPLYLQNSLALAAFSAGLVLLPGGVLNGLMSPFTGRLFDAYGPRA
                     LVIPGFIVAVVALFFLTRIEVGTSALTIIVLHSVLMIGISMVMMPAQTNGLNQLPPKL
                     YPDGTAIMNTLQQVSGAIGTAVAITIMSAGQKAYMETAQGVGPEQMVASLTAGIQNAF
                     VFGLIMACIGLLCSLFIRKAK"
     gene            24319..24687
                     /locus_tag="U0342_000597"
     CDS             24319..24687
                     /locus_tag="U0342_000597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1304 domain-containing protein"
                     /protein_id="HEM2421958.1"
                     /translation="MAILAFILTFIVMIEHIYIMILEMFFANTKLAAKTFGVEKELLA
                     NKKVQTLFANQGLYNGFLAAGLVWGLFFAGAGFAETVQIFFLSCVVVAALFGGATSSK
                     GILVKQGLPAVLALVAVLLV"
     gene            24968..25783
                     /locus_tag="U0342_000598"
     CDS             24968..25783
                     /locus_tag="U0342_000598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2421959.1"
                     /translation="MKKNIFKLMMALCAVLLIAGCGNSTSADKKETKETKEDGTVTFY
                     VVRHGKTMLNTTDRVQGWSDAVLTPAGEEVVKSAGKGLKDVDFSAAYSSDSGRAIQTA
                     NLILKESDKSADKEVQTDPRFREFNFGSYEGDLNENMWTDIAKSQGKTLEEWQKAGIS
                     PKDFADSVAALDKTRVKEGENWPAEDYATIQARLKEGLTDVAKKESKNGDSNVLLVSH
                     GLSIGALLDTIEPGYKLPAEGIKNASVTKITYKDGKFTIGDVNDLSYVEKGSK"
     gene            25904..27334
                     /locus_tag="U0342_000599"
     CDS             25904..27334
                     /locus_tag="U0342_000599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEM2421960.1"
                     /translation="MKRRTYVIITGLVLIFVAGAFWITNSTNQSDQKATQTEPLKKTS
                     PANVKTISSEAKKTLNSLASSGADKASISDLNQLIKELKSYPVEKNDSGAYLQNLTAC
                     LEAVKSYTTGKTDEKTLGKVYPAFLASEQKLSAIEKTNQYDWFYAAAATNQQGLKEKG
                     VVTLTMVGDNSFGTYPETPEHLKFDNVFQKNNGNNTYVYKNCLPWFKSDDYTVINAES
                     AFTNATKAENKKWRIKSDPAHVAFLPASGVEAANLANNHTMDYFQVGYDDTLKAFKEN
                     NIPVFNTDAPLETTIKGMKTVLLGYDCRMSQQSPAYLERIVKDVKKYKKENTLVIVNM
                     HWGVEYRETPTDYQSQFGHAILDAGADIIMGSHPHRLESVEKYKDKYIVYSMGDFAFG
                     ADPTLLSRMTSMFQLRFTKEDNKIVLKDISIVPTYENSDGSTTENNYQPLPVFGDDAK
                     KIVDELNRISKPIEGGVTEYTYFDPF"
     gene            complement(27381..27812)
                     /locus_tag="U0342_000600"
     CDS             complement(27381..27812)
                     /locus_tag="U0342_000600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM2421961.1"
                     /translation="MEKYHRILVAVDGSEPAKLAFEKGLELALKLDGVLGIASIVDLR
                     AFSPNVSYDGSLEEKAELELKTSVNEYAEKARTAGVKQVETFVAKGNPKILLSTDIPA
                     EFQADLIICGATGMNRVEKLVLGSVSSYIMAHAICDTLIAR"
     gene            complement(27913..29742)
                     /locus_tag="U0342_000601"
     CDS             complement(27913..29742)
                     /locus_tag="U0342_000601"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0514 family class 1 internalin"
                     /protein_id="HEM2421962.1"
                     /translation="MKKALKLFLATICMFIMIYPSTAAHAEETNIVNIPDANLKTYLN
                     GLLKQASDAPITKTQMNTIQTVTLSGSTYTDLTGLEEAGNLVTLSLNNTNIQTLEPIK
                     NQTSLTYLTVGGDNVKDSLFVDLNGLVNLQSLSISGSEVTHNVFKTFNKLPKLTYLYA
                     QNSMKITDISALASLPALTTLFLQFDGIDDFRPLNDFESFKNGNLKALAAFGQNTGRT
                     NPRITLKSGKLDYNETNQTLYLPFSMMPKPLTSFDGTVAPFSKSTSASNTYLGFNDVA
                     LPSARLSITDDGITVSGVTKEEFDNLDEIEYNARYDFPTGSYPTPPSMNSYTISSGTY
                     DQYFDISHTLDLTADESFDYNQYDATSEEQFLKDVHAETDDGTAVKSDFDQVVKLDVP
                     GEYTVTLNAENAAGLKATSVTVKVTVHEKPVITADSQISYKKESTKSVDEFLQEIHSS
                     VTGNAVLTSDFDKVVDLNTPGEYTVTLNAINDRGQKADPVTVVVTVTTSDGGHVNPVP
                     PTPEVKPTPQEETDPTIIPEPQSENSEDPVKENNAKTEEKANKTSLTTKENKVEKADK
                     AEKTNQPKTKALPQTGDTNKSTLPIAGVMLSLAALLIFRKSKS"
BASE COUNT         8895 a         6203 c         5545 g         9293 t
ORIGIN      
        1 aaatatacct atgttttaaa aaaacttttc agtggtataa taaggaagga taaattgatt
       61 aagcaacgac aaattgctat aaaggagact agataaaaat ggtacaaata acaaaaggta
      121 aatttgatgg tttacaaaga ctctccaacg aaaaaggtgt cattgcagcg cttgccattg
      181 accaacgtgg ctcactcaaa aaaatgatcc aacaagcaaa aggaacagaa aacaaaaaag
      241 atgtggaaga cttcaaacaa cttgtttctg aagaacttac accttatgct tctgcgattt
      301 tgcttgattt agaatatggt actccagcaa tcaaagctcg ccacgaaggt agcggacttt
      361 taacttctta tgaaaaaaca ggatatgacg caacaactcc tggtaaactt cctgatttaa
      421 ttgaagattt atcggcactt cgtattaaag aaaatggcgg agatgctgtt aaaattctcg
      481 tttattatga tccagatgag ccagctgaaa ttaatgaaat caaatatgcc tttttagaaa
      541 gaatcggtgc tgaatgtcgc gcagttgata ttccattttt cttagagcca attacttatg
      601 atgcaacagt tactgattct ggttctttag aatatgctaa attgaaacca gcaaaagtaa
      661 aagcttcaat taaagaattc tctaaacctc gttacggtgt agatgtactt aaacttgaag
      721 ttccagttaa ctttaaatat gtggaaggtt ttgcggaagg tgaagtcgct tatacgcaag
      781 acgaagcagc tcgtcatttt gaagaatgct ctgacttaag cccacttcca tttatttatc
      841 ttagtgctgg tgtaacttct gaaatgttcc acaaaacaat ccaatttgcg aaccaacata
      901 acgtgcagta tagcggcgtt ctttgtggtc gtgcaacttg ggctgatggt attgaagtgt
      961 acggcaaaca aggcgatgac gctttacgcg aatggcttcg tacgcaaggg aaagaaaaca
     1021 ttacttctct tgataaattg cttgatgaag gtgccgttcc ttggtggaca aaatacggtt
     1081 cttttgaaga cgtacatgta gtagaaaaac aatagcatgc gaaaagcctc cagttaattg
     1141 aattagctgg aggctttttt tattaatttt gatttaaata attatacgca aactgggcat
     1201 atagctcggc gccatttttc atgacacttt cgtcaatatt aaatcggcca tggtgatgcg
     1261 cccattcggt gtctttttct ggattgccgc agccaacgag tgcgaaactt ccgggagctt
     1321 catcttgaaa atagctgaag tcttcgccgc ccgtggttgg acgttcaaag taaagcatct
     1381 cttcgccgaa tgattctgtg attgtttctt ggacgagtag tgcgcttttt tcgtcgttga
     1441 ttactggttg tgtgccttgt ttgtatatca tttctgcctt gccaccgtag atagcggcgg
     1501 tttgtttggc gtagtgttca attgattttg cgactttggc gcgtgttatg ttgttgaagc
     1561 aacgaagcgt tccttccaaa cgggcattct ctgcgataac attgtagcga gtgccgacat
     1621 ccattttgcc gatagttact acgactggat caagtggatc tgtttcgcgt gatacgatgg
     1681 attggaggtt cataacgaat gaggaagcaa ttacagcagc gtcgattgtg tcatgcggca
     1741 ttgctccgtg accaccttgt cctttgaagt cgatttggat aatatctgcg gaggcgaatg
     1801 tggagccgac tacgcacgat atctttccac ttggagtttg ggaccagata tgaatcccaa
     1861 acacgtggtc cacgccttcc atcgctcctt gggctatcat agctttcgca ccctctgcaa
     1921 tttcttctga aggttgaaaa atgaagcgca ctgttccggg tagttcgtct tttatttcta
     1981 cgagtgcttt tgccgcggtt attagcatcg ctgtatgagc atcatgacca caggcatgca
     2041 ttttgccgtc ttctgtggat ttatatggga ggtcttggtt tagttcttgg actgggagtg
     2101 cgtccatatc ggcacgcaag gcaactgttt tccctgattt cccgcctttg agttccgcga
     2161 ttaatccggt tggttccgtg cggcggtaag gaatgcccag tttgtccaat tctttggcaa
     2221 ctttgtcggt agttctaaat tcctgccatt ggagttcggg atgcatgtgc aaatcacggc
     2281 ggaaggcaat cattgcttct tcattattta aaactgcttg ttttattttc tgattcattc
     2341 gcgctttcct ccgtccattt ttttactgtc ttgagtacga cttcgattcc tttttgtagc
     2401 ttgtcgtaat cggtccattc ttctggggca tgacttatgc cgttgtggct aggaacaaaa
     2461 atcaagccca cttcggttaa actagcgaaa atcatcgcgt cgtgcccggc cccgctaacc
     2521 attgttcggt attttaagcc gagttggtcg gcactttcag tcaatgcttg atgaatctct
     2581 tttgataaat gggtcggcgg ttcgtatagc atatcttcta tttcgcaagt gatgccgttt
     2641 ttctctgcgg attggataat ttcttttgtt tttgctaatg tattttggac gtgaatttcg
     2701 tcttttgctc ggatatctac ggtaaaaacg actttatctg gaataacgtt tgcgccattt
     2761 ggatagacgt tgagtttgcc cactgttaat acagttccgc cgccttcttg gatagctagt
     2821 tctggtagtt gacctaaaat ttcgacagct gtgatcagcg catcttttcg gtcaagcatt
     2881 ggggttgtgc ctgcatggcc ggcttgtcct tttactgtta cttttatttc tgttaaaccg
     2941 actactgtat ctactagcgc cacatcttca ttggcatttt ctaggactgg tccttgctca
     3001 atgtgtagtt cgataaatgc tttaacggat tctttcgtgc ggatagctgt aactacttga
     3061 tttgcatcaa atcctacttt tgccatggct tctgcggctg taattccatc tatatctttc
     3121 atttcatgga gcatttcttt ggtaactttg ccagtaattg tacgtgaagc aaggaggcca
     3181 gcgccaaaac gagcgccttc ttcttccacc atcgcaataa tttcaagcgg aaaatgtggt
     3241 ttaatttgtt gttcatagaa aacagtggct acttcaagtc cagtaatgac gccagctggt
     3301 ccatcaaaag caccaccatt tggtacagag tcaaaatgag agccgacaat tactgctggt
     3361 aactttggat tttcgccttc tagtcgtccg tagatatttc caatcgcatc ttctgaaaca
     3421 gcaaggccta ctttagccat ttcttgtttt aaatagttgc gcgcgtcgag gtcttctttg
     3481 ctatatgtaa gccgagttgt tccctgaccc ggagttgctg tataagtatc taatttttct
     3541 atgtgttttt ttattctttc aagatttgtt tgcatcaagc acacctcctt ttttctattt
     3601 tacaggaaac ttgaaaaaat gctcgctaaa acaactcaca aaaaaagtga tccctatttt
     3661 ctagggatca cttgcgaatt atttagcgaa ttgtggtaaa aactctttgt gtgcttctag
     3721 catttcatct agaattgttt ttgctaagtc gccgcttgga acgagtgggt tagaagtgaa
     3781 tgcttgtagt gcagttgcgt aatcgcctgt tactgctgct tcgatagtca attcttccat
     3841 ggatttcatt acttgtagta agccgcgttg tgctggtggg aatttaccga agttgattgg
     3901 ttctgcgcca tgcgcacgga taacacttgt gatttctaca gcactatcgt aaggaacgtc
     3961 atcaattgcg ccgttattac gagtagatac taccattacg gtacctttgt tgttgtaaat
     4021 ggaattgatg atttcacatg ctgcatcact gtaatgtgcg ccgcctcgtt tggataattc
     4081 ttctggtttg taatcaagat ttgggtcttt atataattcg aataagctgt cttctagttt
     4141 tttcacgact tctccgcgag taccttcgtt tttgaaagat gccagttctt cttcaagcat
     4201 tgcatccgtc atgtagtagt aacgatgata tggacaagga agcattttta gatgtttaac
     4261 ttgctcatat aagaagcgca tgtttttaat gttttcaacg acttttcctg ggttagcatc
     4321 tggtgcataa aggccgtcga taactttttc tgttaattcg gtaccatctt tgtcgaatac
     4381 gcggtgccag tgcaagtggt tgattccagc aaatttgaag aataagtctt cttctggttt
     4441 ttctaaaacg tcggatgcgc ttttcactgc tccgattggc acgttacaaa gaccgataac
     4501 tttatcccag ttgccgtaac gaagaacggc ttctgttacc atacctgctg ggtttgtgaa
     4561 gttgattaac caagcatctg ggcaaagttc gcgcatatct tcaacgatac caagaatgac
     4621 aggaatcgta cggaaagctt taaacattcc gcccgctccg tttgtttctt gaccgatgat
     4681 gccgtggcta agaggaattc tttcatcttt aatacgagcg tctaataaac caacacgaaa
     4741 ttgtgttgta acaaaatctg catcttttag agcttcacga cggtcaagtg ttaaatgtac
     4801 ttcgcagtca atgtttgctg ctttgaccat acgttttgcc atattaccaa cgatttctaa
     4861 tttttcacga ccagcttcaa tatctactag ccaaagttct ctgattggaa gttcatgata
     4921 gcgtttaata aatccttcaa caagttctgg tgtgtaactg gaacccccac caattgtaac
     4981 gatttttaca ccttttttca taatatactt acctcctaga attttaaagc gttttctttt
     5041 cttctcattc atcataattc atgtaatgca ttacaggtca agcacttatt ttaaatttat
     5101 ccaaactggc tatttggcgg gattttttgg tatactaatt agagagctac gagaaatcga
     5161 ggtgtttttt aattggcaaa tatacaagaa atcgcgaaac tagcgggtgt ttcatcagca
     5221 acggtttccc gagtgattaa taagcgcgac tatgtaagcg atgaaaccag aaaacgtgtt
     5281 cagacaataa ttgatcagtt agattatgtt ccgaatataa acgccgtgtc tctgaaaaaa
     5341 ggggcaacga agctaattgg catggttatt cctagcttta cagattctct gaatgtattt
     5401 ttgaaaagtt ttacgatgat agcgcaagag catggttata acgtcacatt gtttatgacg
     5461 cggattgatc cagataaaga actagaggcc ttagagatgc tgcgccaaaa acaaattgat
     5521 gcgctcgtcc tggtcattcg gtcaaatgat tggaaaacga ttgaacatta caccaaatat
     5581 ggcccgattg tcacttggca acgtgtcgaa agtgaaaaaa tcccttctgt atttatgaac
     5641 caatatgatg gatatacgct tgcactagaa catttatatg caaaaggata tcgaaaattc
     5701 gtgaatgttt acgggaatac gaccgggctc aatacgcaaa gtcgcatgct tgcttttaaa
     5761 gacttttgtg cgcgttatga gcttgatccg catgagttta gacagtttta cgggcaaggt
     5821 tctcggcaag acggggaaaa gattgcgcat tggtttgcgg aaacagagca taaacctgac
     5881 gcctttttga caccgaatga ttattttgcg gctgggcttt tgacggaagc aagacggctt
     5941 ggttacagtg tcccggaaga ttttgcgatt tgtgggttcg ataatatgga aatcgcgcat
     6001 ttgcttgata tcacaacgat tcactacccg gtaaatttgc aagctgaaaa tgcttttacg
     6061 ctcattatga atcaattatt tggtagcaat ttgccactgc ttgatttaga ttttcattta
     6121 gttgaacgaa aaacgacata ataaaaggtt tcctcgcaaa tttggaggaa acctttttcg
     6181 ttagttttta aaagaatgaa ttggtgctgg gattcgaccg ccgcgagcaa tgaagtccac
     6241 agacgatttt ccgtttactg gcattactgg tgccgtgcca agtaagccgc cgaattcgac
     6301 catgtcgcca actttggtgc cacttgctgg aatcactcgg acagcagttg ttttattgtt
     6361 aatgacgcca atagccgctt catccgcaat cattgctgct aatgtttcgg cagttgtgtc
     6421 acctggtacg gcaatcatat ccagaccaac cgaacaaatt gctgtcattg cttctaattt
     6481 ttcgaggttg agcgcccctt gctgcacagc ttcaatcata cccgcatcct cagaaacagg
     6541 aatgaatgcg cctgataaac caccgacatg tccacaagcc attacgccgc cttttttcac
     6601 tgcgtcattt aaaagtgcga gtgcggctgt cgtgccatgt gttccaacca tttctagtcc
     6661 catctcttcc aaaatgtgtg cgaccgaatc accaatcgct ggagttggtg caagtgataa
     6721 atcgacaatc ccaaaaggaa cgccgagttt ttcggaagcg acttggccaa cgagttgacc
     6781 catcctagtg attttaaacg ctgtttgttt gactgtttca gcaacgatat caaacggttc
     6841 gccttttact ttttcaatag cacgtttcac cacacctggg ccgctgacac caacattgat
     6901 aacgcagtcc gcttcaccaa caccatggaa tgctccggcc ataaaaggat tatcctcgac
     6961 agcattggca aatacaacga gtttcgcgca acctaggcct tgcgtatctg ctgttaagtc
     7021 tgccgtttct ttgattacct cgcccatttg gcggacagca tccatattga ttcccgttcg
     7081 cgtcgagcca acattgaccg atgagcatac gcgttccgtt tgtgcgagtg cttgcggaat
     7141 cgagcgaatc aggatttcgt cacctttcgt gtagcctttt tgaacgagtg cggaatagcc
     7201 cccaataaaa ttcacgccaa cctcttttgc agcagcatca agtgttttcg caaattctac
     7261 gtagtcagta tctgcgcttg atccagcgat aatcgcaatc ggagtgacag aaattcgttt
     7321 attaataatt ggaatgccaa actcagattc aatcgcttca ccaactgcaa ctaaattacg
     7381 cgctttggta acgatttttt gatagatttt ctttcgagcc acttcgccgt cgccgtccat
     7441 acaatctagc aaagaaattc ccattgtaat cgtccggatg tccaattttt cttcttcaat
     7501 cattcgtata gtttctaaaa tttgatttgt ttccatacta gcatcgcccc catcctaaag
     7561 tttgtgcatt gcgttgaaaa tttcttcccg ctgaatatgt atttttactt ggaggtcctc
     7621 gcctttaccg gctaattctg cctttacttc atcaaattct ttcgtgattt ggctaatatc
     7681 gcacatcatc atcatcgtaa aataaccatc cataatcgtt tgggatacat ccacaatatt
     7741 gatattcagt tcagctaatt tattactaac acctgcgaca atacccacat tatcttttcc
     7801 aattacagta agtacagctc tcacattcaa cactccttta gttcgttaat acgttccatt
     7861 atagcataaa aaatctaaat cttgtgaaaa agaaagcaaa attacttcac ctgccaagaa
     7921 gtgcagtatg acgccattgg caaactattt tcaagcgtaa ttaatttact ttgactgagt
     7981 aaaaatgctt taaatttttc tggcaaacct aaatctgctt ctaattcttt tgtgataaaa
     8041 tcttttacat aaccaatttc ccatcggcta tcttgcattt tttctgagaa gatacttgtt
     8101 tccgcgccca ttttccagtt atgctcttgg atgatttctt gcatatctat tggtgtaatg
     8161 aatgttcgga tattggactg cgtgtcttgt ttgaaagctt cataagatga ttgggtgagc
     8221 acagctaaca tatgcgacgt ttgttttaca tccgtaattc tcgtatccca ttccgcataa
     8281 caaacgcgtt tcgcccactt gcttagtaat tcgagcatca tcgtgagctc acttttggaa
     8341 ctaaaatacc acgaagcatg cgataaaacg gctacatcaa aagcattttc tggaaaagtg
     8401 atatcaccgt ttaaaatatc tgtccctagc ttaaaatcaa tttgcgcacc aagctttgat
     8461 ttctgcaaat ggtctgtcgc atcgccaatg gtaaacggag caccataagt ccgcggtgca
     8521 atatcaatac cttgcacaaa gccactagca ccaactgcat tcgcaagtac ggctgtcgta
     8581 tcgccttgcc cacaaccaac ctccagcact cggtccccat ttttcacttg ccaaaaatca
     8641 actagtttga tgcggtgctc tgtttgggtc cgctgaattt ctttgtcatt ttcgtttaat
     8701 agcatacaat cgactatttc ttctaagttc atggtattcc tccaatcaaa aatgagagtt
     8761 acctcctaat tatagaaggt aactctctat tttacacgtc atattctaat tcttttgttg
     8821 ctaaatcgat aaaatcaagt ggtgtcttga ctttttcgct atcaaattgg cttgttccaa
     8881 ttcgaagttc tagcttcaca cggtacttcg cggcaaattc ttcggtgttg gcttcagcta
     8941 tacggctttt aattcgatcc gcaactaatt tcccacccgg ttcgtcagtt agtaacaaga
     9001 gtccccaagt cgcatcatct ttatctaata agtaaaggac atcactcgtg cgaatacaag
     9061 tctctaaaat cgctgaaata tcttgtaacg ctaggcgcat ctcttcttcg ctttggaatc
     9121 gtttcaactc gcgccagtga cgtactttga taaccatcag tgataaaggt aaatcataac
     9181 ggcgcgaaat actggaaaaa attcgctcgt cattttggaa tgaaacgata tttttaagca
     9241 aagtttcttg gtcaatcgtt cctaaatata gattttgctg tttgattttc gtgttctctt
     9301 cttgaagcct tgacgtattt cttgtaaaca tcgcactagc tactgtgaaa aggggcgtga
     9361 ttataagcca gaagtagcta ccaaaaccat aggcgatttg atttgcgaca atttcataaa
     9421 taatataagt tgcataaata aaaatgtaga ggacatttaa aatcaaacca agcgttaagt
     9481 tcgtaaaata ggtgataatc acaagtaaaa aggtgatatt taataaaata atgtttcgca
     9541 aatattcatc cggcgtattg atcataaagc caattgtgat gaaacaaagc aagatgaaaa
     9601 ataaaaagcc gatatctgca aataagttat tcgttatttt tttcattttt tatttctccc
     9661 tcacttccgg ctccggcgat atttacgcaa gattagtagg acagcgacaa ctaagataac
     9721 gacggttaga agcgcgaatg ctccgaacac agtgacttct ttgttattac tgatttttga
     9781 cccaaagctt tcttcctgtg tatctgctgc ttttttgaat cggtaggaat gtatcgtgtt
     9841 atcagtatca acaatggcgc catctccgta aattttagct aggttcgctt ttgttgcgat
     9901 taaatccgat ccgagttctg tttgtttggc acctggacca gtaactgcca gaattgggac
     9961 gccatctgat gtaattaact gcacactacc aagttgtttg ccgtaatttt tttcaatcga
    10021 gattttttca ttggaaagga agtaatcgcc tgttttgttg tactgaaaat atagatcgtc
    10081 attggcgttt ttaattactg gattattatt cattgtacca actgcaacaa tgttcgatcc
    10141 ttcttttggt tttttccagt tggcggcatg taccgccgtt aaatctcccc tatttccatc
    10201 atggaagcgg cctaacagat tgaaaatatt tgctaatgaa tctgtatctt ctgtcgttaa
    10261 tttatcagga acaacgacaa ctgcattgtt aaagtcacca tttgcaataa atgggtacgg
    10321 atattgttca aaaagcaagt ctgtttcttc gcttgtgttt aaattgattt ttgattctgg
    10381 ggtgatatac gcccacggga tttcagaatc tgcaataaag ccacaatagt tatttgttaa
    10441 aactaaatca aaggcaacgg taactgaaaa atcccctttt acgtttaaat cgctcggaat
    10501 ttggaacgtt aatttgtcgc cattggcttt tttagcggta agtttttggc tgccgattgg
    10561 ttttccgttc actaaaatcg ttactaatga atgctcgaaa tccaagtttt gcgcatacct
    10621 aaaatcaagt gatacttctg ttcctgttga tgcgctacgg ttggctggca tgctgataaa
    10681 gtaatcttgt gtgatatgcc caatgccttt tagtttatcg ccagttgttg ttagtttcgt
    10741 atttttgtca acattagtcg ctggtgtgtc gattttttcg tctgttgtta gccatttagt
    10801 atttgttcca agctgactta agtaattttg gttggcgatt agtttgccag ctttttttag
    10861 tgcgtcgttg gatttagaag taaccacgag tgtattcgta tttccgactg tcactacttg
    10921 gaaaagtgct tgtttttcta atttattatc atcttttatt tgtgatttaa gatcatttgg
    10981 taaattgtca tagcttgaaa aaagtacgag atagttttta ccgtcacgcg tttttgcttc
    11041 ctcgtattga ccaaaagcga tatttttatc ttctaacgta ttcgctgcag aaaatccgga
    11101 aagcccttca agtgctgcgc caagttcggc atcgccggct ttgtttgaga cagctactgc
    11161 gccttgttca cttttcacaa tatcaattcc agtgaagcgc tcgccaaact cggcaatcgt
    11221 tttttggaaa gccttatcgg aataagatac gtttactgcg cttgttttat cgaattgcag
    11281 ccagttggca ggtgtatcgt caatcgtaca acgaccatca ggcaaatcag tgtagacaaa
    11341 gctttcgatg gatagaacat tgactccttt ttttaactta tctttcggaa tttggatttc
    11401 aatctgtttt gttcctttgt ctgctttatc tggtttaaaa gagtagaacg caacatcgtt
    11461 tattttcagt gtcatcgtgg aaacttcttt ttcgctcagt tgggtaattg tatacacaag
    11521 ctttacgtta gcgtttgata catcccagta gttttccacc gtgaagtttt gtttggtggt
    11581 tgtgaatttt ccttgggcgg ttttatctgt tccaaaaacc gtttgatagt ttttatctgc
    11641 tgcgagaacg tctggcctat acagaaatag tacggcgaac ataagcagcc cgattacagt
    11701 taattttttc attaggcact ctccttttta gaaacgctcg gttttatacc atttggtttc
    11761 cctttttagt acggtatctt ttaagaaaat aaagaatcca tatgcggcga ccaccatcca
    11821 aagctggcaa tacgtcacat acatcaacat aataaataac aaatttgaaa aactgatttc
    11881 gcctttttcc gtggtgagtg taataaaagt acctgcgaca aaaagtaaaa tggctagcaa
    11941 ccaaagcgcc ccgctaaggc cagcaagcgt tgtatgtaca agtcccagcg catataatac
    12001 gagtaaaaca tcactaacaa tcaaggaagt taataataaa aagtaaatcg ataaaaagta
    12061 taaaatatca aagcgaacgc gcctaccttc tcgtttgaaa aggagtggaa cgttttttaa
    12121 aattacataa atattgcctt tcgcccatct tgagcgctgt ttgaaccaaa ctggtaatgt
    12181 ttgcggctct tgttcccacg taacagcctt cgcttggaat ttgattcggt aacccatcat
    12241 gtaaatccga aagctaatct cggtatcttc cgcgacagct ttcacatccc agcccccgat
    12301 ttcttctagg agcgaccttc tcacaataaa attagtacca ggaatggtgc atagtttgaa
    12361 aagggcccat ctgccggcct gagccatcca ctgaaaacta agcgtttcaa tattgataaa
    12421 tcgcgttaac cagcttgcat ttcgatttcg ggttctgaat ttaccgatga ctgcaccaag
    12481 tttcgcatca tttgtaatct caccaacaag gattcttagc gcttgccgtt ccggtgtatt
    12541 atcagcatca taaatcgcca ccagttcccc acgactttcc gcaaacccaa tattgagcgc
    12601 attcgatttt ccttttccgc ctgtaatatt atcggtatta ataattttta aaaagcgtgt
    12661 cggatttttt gcttgaatgg cggctaaaag ttccgcgcta ttatctgaag aattatcatt
    12721 aatgacaatg atttcgtaac gatcgaccgg ataatcaaaa gcaagcagtg attcaactgt
    12781 tttcacgatt actttccctt cattatgggc cggcaccatg acagaaacaa atggtacttc
    12841 cgctggtatt tcgggcactt ttcgcgcttc atttttcaaa taataaacat atcctgcaac
    12901 aattaacact atattaatta gcaaaagtcc ccaaatacac accaccgcga ataatgctaa
    12961 ataatctgca ataaccattt atttcacctc atttcatata ttttttcatg taaagccggt
    13021 atccaaagac aaataaaacc ccaataatgc caagtgaaag tacaattact atcgtgaaaa
    13081 aggtgttttg atagccgaag aacccttcta aactgcccgc ctgtttgact gttttatttt
    13141 tcgttttaat atagtttaaa tcgccatcga gcgtaacgga ttgattattg atataaagtg
    13201 agcctgcact cgattcaatc gtatccttat ttgtttttac cccatgatct tggaatctaa
    13261 aatcactaat attgtcgttc gctagttcct cagcagctgc ttttaattct ttctcgttat
    13321 caaagaaggg ataggttatc gcgatatcga ccgggaaggt tctcccttca gtcgtagtcg
    13381 cataaaaatc gttcgccacg ctatacggag acttttcaaa tgcactgcca ttatttactt
    13441 tcgtcgtatg gatgattttt tgatttggta gcaaaatccc ggtattaaac ggtgcgaaac
    13501 cttctacgcc atatacttta tcaaagttcc agtacagttc tgctgtaact ccaagcggtg
    13561 cgacgtcatt ttccgcgaag aaatgtaccg atttttgcat aatcttttca agttctcccg
    13621 ctggactatc tccgtacgtc actgctggaa cgttcatcat aatcgtgccg ttttttgctt
    13681 gaacgtagcg caaaatctcc gcataatttt tcgccgcttg gaaatcttga ttgtaaaaaa
    13741 caggccccgc actcacgata aacggaattc ctttttcata aaaagtatct gccgtttttt
    13801 tgagcaaatc gaaatcaata aaaggattta cgcccgtaat aaacgcatat tggttggtgg
    13861 tcgttttaat atcgaataat gctttgagta cgtccattag agcaaattca ctcgtattat
    13921 ctgcttgaaa aagaggtgcg tacgcgtaat ttcctgcttg aacgccgtat gcagcttgtc
    13981 cattttcagc tgcgtccatt tcaccaaagc ttgttccttt ataggaagta attagatttg
    14041 tttcgttcac cagctgtggt tttccagaca atccagcttg cgtttgaatt gtgatagaag
    14101 cctctgtaat tgctttagtt ttcagttgca atttatccgt taaaaatgtt gggggatttc
    14161 cgcctatgta tgctattttc gctttgcttt tggctaattt ttccgtccaa tcacttgcta
    14221 agccatcttt tttattttga agtacaataa tttcgcttgt ttgacttaaa tcaggatttt
    14281 cctcccaaga ataaatcgtc actcgtttgc ccaagctatt taacattcga agtagcgcat
    14341 ccatattgcc ttcattctct gtacctgtcg ccaaactatc ataaaaaaca acgacaccgt
    14401 catccgtttt tgcaattgcg gaatgcccgc caacaacgaa aatcatgaat gctagcagaa
    14461 tacttacaat cagtttttta cgcattccgc tcacctctct tcttcatgta aacttccagc
    14521 agagaagccg ctccaattaa catcgtcaaa tcaaagcaca cattaaataa gaaattatgt
    14581 ttcgttaaat ccgcttcccc gtcgccaact atcgtcacta aaatcaccgc aaacccagaa
    14641 ccaatcagca aaataactaa atcaaataaa agcattccac gaatattttt ctcccggaaa
    14701 tgtttaaaag cactcacccc ataacaaatt agaaaaacaa gcgcccataa aattaaaaac
    14761 gtaaatttcg ctggagccaa tttttctttt acatcactat agatggagaa aaaatgcgtt
    14821 ttctctttaa atttataccc tgtcgccttt tcaaaattcc ccatctcaaa tggacgaatc
    14881 gaaaaactat tttgcgcaga taaatctagc attttcccaa attgtttcgg attttccaag
    14941 taataactca aaaccgtaac aaaattataa ttaggataaa attctttttc catcagtttt
    15001 gagtctaaat caatcatttt atatttttga taaaaattcg ttcctttgag taaagcaaat
    15061 tcggaattca ttcccatttc ttcgagcgat ttctccggat tttctgaatc aagtagcaca
    15121 ccgcgcgtca ttgtttggta ctgatttatc gttacaaact ccccaggaat aaaggcgtac
    15181 atcacaaccc cactcaagaa aataacaaaa aaagtagccg ctgctgaaat ccgaaatgca
    15241 cgatttttcc ggatgaaaaa cacgagtatt ccacaaaccg caataacaac cgcaatcggg
    15301 gcattttgct gttttgccgt aattaaaata agggatgcca caaaaatcaa acctagcatc
    15361 gcataatcat tatatttatg ctgatataaa agcaaaaatc ccgccgaaat atacagcatc
    15421 ataatcaaaa taagcccttc actgaaaaag gaattaaagt aagcagtata agccgtatct
    15481 gcgaaaataa ataccgtcag cgccgcaacc acataacccg gccagccttt catttttgcc
    15541 gttaatcccg ccactaacaa ataaatcgcc ggcaaaagaa gcgctaattg caagccacct
    15601 aaaaaacgca catcaaaaac cgttgttgac caaaaaagct tatttaaaag aagcgccatt
    15661 tgaataaaaa tactttgcga agagtagata gctacttggt tttcattaaa gtactgataa
    15721 atcccaaact ccttcacaaa atgcccaaat tgcagcgcgt cataattcgt attattgaca
    15781 aataaaccat tactcgagaa gattcggaaa aagtctccat tatcagccat accaatatac
    15841 ggtggcacaa aaagcgctat gagcgtaata ataaaaacac aaataaccgc aaatatttgc
    15901 ggtgttaaat ggtgccatag ccacatacta atggatttaa ctttccctat catgatgcta
    15961 tccccttctt atttacgata gaccaatgtc acaaaataga cacatttaca tttcattata
    16021 cgagaatgcc cacttttttt ccatgctttt attcattttt tttaaagaag ttgactacaa
    16081 ctaattttct tttccactaa aaaggttata ataaacacaa attcaagctt gactatcacg
    16141 cgacgtcata ctttatagta aaagcagaag gaggaatcac tcatgcaaat aaaagaatta
    16201 gctgaactca ctggtgtaag tgtgcgcaca ctccaccact acgataaaat aggcctactt
    16261 gtcccgcaaa aagatgactg gaatggctat cgtatttatt cagaaaacga tgtcgacaaa
    16321 ttacaacaaa ttcttttctt taaagaactc gatttccctt tgaaaaaaat aaaacaaatt
    16381 cttgatgatc cttttttcga taaaaatgtt gctttagatt tgcagcgtca cttactaata
    16441 gaaaaaaagc agcgcattga aaccatgcta gcaaccctcg accagaccat caggaatgaa
    16501 aaaggagaaa taacaatgac aaacaaagaa aaattcactg gttttgattt ttccaccaat
    16561 ccatacgaag aagaagcaaa aaaacgttgg ggcgataaag tagtagaaaa agccaatgaa
    16621 aaagtaaata atatgagcga aaaagaaaaa ttaactttaa aagaaagttt cgacgcagaa
    16681 tttcgtcatt tagcatctgt tcgagaactt gctccagagt cagaagaagc ccaactcgct
    16741 attgaccatt ttttccatta cttgaatgac acccacggca atatttattc cctagaagcc
    16801 ttcgctggtc ttggggaaat gtacgttgct gatgagcgct tcactaaaaa tatcgatcag
    16861 ttcggtgatg gcctttctca cttcctcaaa gaagccatga atatttatgc caaaaccaaa
    16921 taaaaaaagc cacgatttct taaaaagaga tcgtggtttt atgattggta taacaaagaa
    16981 cggggtaaat agtataagat ttcattaata tgtatctatg atgtaaaata aagaataaaa
    17041 tacatttcaa gggaggaact tatgtttaaa cacatcttgc tttcactaaa tgggtacaaa
    17101 atatcctatt tacgaaatga tgtcatttca ggcgttggtg ttgctgcact gacgattcca
    17161 gttgcaatgg gatatgcaca agtagcagga cttccaccca tttatggatt atatgcatca
    17221 tttttaccgg ttattgcgta tgttattttt gccagttcac cacaacttgt tttcggaatt
    17281 gatgcaacgg caagtgccat cacaggatcc atcattttag gaacagctgg acttgctgcc
    17341 ggatctaaag aagctatcgc gctcgcccca attctcgcat tcttttgtgc aatattttta
    17401 gttcttttct ccgtattaaa attaggacgt ttcgcaaaat acatatcagc cccggttctt
    17461 agtggattca tttccggact tagtgtctcc atcattatgg ggcaaattcc taagataatg
    17521 ggcctaaaag aaagcggaga tagtttcttc tctagtctag gcattatttt cggacagttt
    17581 ttccagtcca attggatttc atttgccatg ggcgtggtta cagtcattat tgttatcact
    17641 tgtaaaaaag ttataccaaa aatccctatg tctcttgtag ttttagtact tgggacaatg
    17701 gctgcttatt tctttaaatt agatcaatat aatgttgata ttgtaggtaa aattccagtt
    17761 ggcttccctt cactagcgct acccgatttt ggtgcaagtt cgtgggcact cgcgattggc
    17821 ggcggtttag tatgtgccat cgcaactttt gccggttcgc ttttaccaag tgaaagtttt
    17881 gctatgagga acaaatatac gattgatgat aatcgtgagt tatttgctta tgggatttct
    17941 aatttcgtcg ctgcgttttc tggttgttcc ccagcaagtg ccagcgtatc cagaactgct
    18001 gctaacgaac aatttcgtgg taaaacgcaa atggtttcta tcgttgctgc gaccattatt
    18061 gcgctaatcg ttgccttctt aagtggctta ctttactata tgccgcaacc agttctttca
    18121 ggtatcgtat ttgctgccct tgtaggtatt attgatgtag atgtgttaaa aggtttattc
    18181 aaagtttctc gtcgtgaagc aactgtttgg attgttgcag cacttggtac ccttttagtt
    18241 ggcgttattt tcggggtact acttgggatt ttcctatcat tcattaacgt agtaagtcgt
    18301 tcgatgaaat caccaattgc cattcttgga gtgatcgaag gacgccacgg ttatttcgat
    18361 ttaaaacgta aaccagaagc aaaaccaatt ccaaatgttg tcatttatcg ttatagcgct
    18421 tctcttttct tcgggaattt caacaaattc gcagacggct taaaagaagc agttcaagat
    18481 gatacaaaac tagtcatttt tgaagcgagt gcgattatta acattgatac aaccgcaacc
    18541 gaatctatga aagacttgct caaatggctt gatgacaaag gcattgaata ttactttgct
    18601 gacctaatcg accatttgaa aaccagcttt agaaaacatg atcttggcta tattatcgat
    18661 aacggctaca cgaagaaaac cgtggaagac gcgctcgagg cttattatgc cgaacataaa
    18721 taacaaaacg cttagccggg cctaaactcg actaagcgtt tttcattttt acaaaagcgc
    18781 aaaaatccgc ggactaatta accgcacaaa cggtgacacg ataaaaattt gcaaaaataa
    18841 agccacaaaa taattgcgca aaataagaat acctagatga ctccattcgc cttggttcac
    18901 aatcaggcta agcgtcgaca taagcacaca cataaatgta accatcaaca attgcatcat
    18961 aatgatcttt ttaaatttcg aagcatcttc actaaccaaa agggcgtgta gacgatacac
    19021 aatttttccg acaacaaaaa agtctaataa aaatccaata aaaagaaacg ggacaaatgc
    19081 ttttaaaata atcaaaaagg aattcgcgcc aataccattt tcaagaaaga tattataaga
    19141 gctcatgcat aaaatcatca aagaacacat aataagtgta aaaacgacct tctctttcct
    19201 attactgtac ataatttcac ctccaaagaa ctatcgtagc aaattaaaaa attcttcgta
    19261 agtgacaatt ttgttacaaa aaaagttttg ctcggaaatc caagcaaaac gtagcttttt
    19321 acattttctc tttatcaatt tgcgttctta tttcccgggc aatattttca attgtatata
    19381 gcgccggtag ttgggacgtg atattcgctt cctggtacat ttccttatta atataataag
    19441 cgatgttcgc gtcagatagc cttgcaattg ttgatttcgc gctattcgta atcgaaatta
    19501 ctttacaatt ttgcgctttc agttggtgaa tgtagcgaat gatgtcttca ttttcccctt
    19561 ccaccgaaat cgcaatcata cagattttat cggataattt gctcgataaa tggtaaaacg
    19621 ggtggttaag cggatcttca atatgtagcg ccagcgtaaa taatgacgaa aaataaatcg
    19681 cgccatattc agcaattaca cccgatgaac ccaccccagc aaataaaacc agttcgcgat
    19741 cacgaagaat ctcgaccgcg ttttgaattt gcgctttaaa ctcaggttgc gccgtccgtt
    19801 ttagaaaatc aatataagtc gtttcatccg ccatatcaat ttgcgccaac ttctgctctt
    19861 ccaaataaag ctgtaatttc acccgaaact ccgaaaaacc attacaacca aattttcggc
    19921 aaaaacgtag aattgtcgtc gtactcacat gcgcttccgt cgccaaatcg cgaatccgca
    19981 tataaacaac tttatctaaa ttcgccacaa tataattata aatatctaat tccgtatcat
    20041 ttaattccaa atttttatcc aaaaaaagca ttttcgcacc tcttttcgct ttattttacc
    20101 atgtaacacc tcgttactca aatgtgacaa gttcctactt agaaaatcct tacctaaacc
    20161 tcgtcaaata ctagctattt tttcataaaa ttcctatact ataactgtga gaagaaaagg
    20221 tgataccaaa taagtaagcc ttttcaaaaa aatatccttg gaggtataaa taatgactaa
    20281 aggtattaaa atcgcaacta ttggtggcgg atcaagttat acacctgaac taatcgaagg
    20341 atttattaaa cgtcaagacg aattaccagt tcgtgaacta tggttagtcg acgtagaagc
    20401 tggccgtgaa aaattagaaa tcgttggtaa tttagcaaaa cgtatggtag aaaaagctgg
    20461 cgttgacatg gaagtacatt taacactaga ccgtgaagaa gctttaaaag atgctgattt
    20521 cgtaacaaca caattacgtg taggtttact agatgcacgt gtgaaagatg agcgcatccc
    20581 gaattcatat ggcgttgttg gtcaagaaac aaacggacca ggcggcatgt tcaaaggact
    20641 tcgcacaatc ccagttattt tagatatttg taaagacatg gaacgccttt gcccagatgc
    20701 ttggttaatc aactttgcta accctgcagg aatggtaaca gaagcagttc ttcgttacag
    20761 taaccaaaag aaagttgttg gcttatgtaa tggccctatc ggcatcgaac gcaatatcgc
    20821 tgaaactctt ggcgtagacg tttctgaaat ttacgtagaa ttcgttggtc taaatcacat
    20881 ggtattcgcg aaaactgttt atcataatgg caaagacgta acaaaagatg ttgttttcaa
    20941 aatgacagaa gatgaagctg gctcaagcct taaaaatatc aatgcaactg gttgggacaa
    21001 aacgttctta cgtacactaa acatgattcc aatcgactac ttgcgctact actggcaaac
    21061 aaaacaacaa ctagaagacc aagctcgcgc atacgcagaa catggtactc gtgcagaagt
    21121 tgttaaaaaa gtagaagccg aacttttcga gctttacaaa caagaagaac ttgctgaaaa
    21181 accaaaacaa ttagaacaac gcggcggcgc ttactacagc gaagcagcat gtaacctaat
    21241 taactctatc tacaacgaca aacgcgacat tcaaatcgtt aatactcgta acaatggtgc
    21301 catccttgat atcgaccctg attccgcagt agaaacaaac tgtgttatca ctcgccaagg
    21361 cccaattcca ctagcaagcg gacgtcttcc aatcgctatc aacggcatca tccaagaaat
    21421 caaaactttc gagcgcctaa cagccgaagc agcagttact ggtgattacg acaaagcact
    21481 acttgcaatg acaatcaacc cactaactcc aagcgaatct gtagcccgcg aaatgctgga
    21541 tgaactttta gaagcgcata aagagtattt accgaatttc tttaaataag taaaaaaaga
    21601 gcctgtcaaa gggctctttt tttatatccg ccaatccgtc atattattct ccaaataatc
    21661 aatcccaaac gccaaaagcc caatccgata atccgtcgta aacttacgcg acaacacaat
    21721 ctccggcaaa accgcatatg gataaacttg ctttaactct tccgtcagtt cctcggtgaa
    21781 atccttctgc ccaaaataaa aatttgtata gagcacaatc gtttccggat cataaaaact
    21841 catcgttagc agcaccattt tacgaatgtg cgctttaatt tcatcgacag aaaaatcaaa
    21901 gttatcccag tccacttgaa gcggcatatg cttaatctcc ccagccagcc cattttgacc
    21961 tttcaaaatc tctccgttca tcaaaagccc tgcacccggt ggaaaacgct ccggataata
    22021 aagtccaacg atattctcct ctttcaccgg ccgattttta taccctaaaa ttgccgcatt
    22081 cgtatccgtc tcaaccaaca ccggtaaatt cacttccgcc tccaaagtct cacgcaattg
    22141 cacatttaaa agtagcggaa agtccatcgc acgtaactta ccgcctattt caattcccgg
    22201 caccccgatt acaacacaag aaatcttcgg aaaagcgcaa acaagatctt tcgtattccg
    22261 tttcagcgca gtaatgtcca aatcctcccc agacatatcc tccacaaact ccggctcacc
    22321 aagcaaatta tagaccgaaa aagaataagt aattttcttc cacttttctt gcaaactaat
    22381 aaccaacacc tgctgaaaat taggattaat ttcatacgaa acagctcttc ttccgccagt
    22441 cgcaaccgaa ttatcttgtt ctaaaatctc ttcattttcc actaaatcac gaatcagctt
    22501 gttcactgta actacactta gcccagtcac ttcggcgatt tccgctttcg tcatcgcacc
    22561 ttgttgccgt aaaatcgact tgatattttt cttattcaat tcttttaaat cacgaggaat
    22621 tgccatcatc aaccactcca ttcgtaaagt tattaaacaa actttataaa ctatatttac
    22681 tatcatttta accactcaga acccatttgt caaaacaaaa aagaacctct cattacgaga
    22741 agttctcttc gctttattat ttagctttac gaataaataa cgagcacaga agaccaatac
    22801 aagccataat cagtccaaag acaaaggcat tttgaattcc tgctgtaaga gaagcaacca
    22861 tttgctccgg tcctactcct tgcgccgttt ccatataagc tttttgtcca gctgacatga
    22921 tcgtaatcgc aacagccgtt ccaatcgcgc cggaaacttg ttgcaacgtg ttcataatcg
    22981 ccgtgccatc aggatataat tttggtggta attggtttaa tccgtttgtt tgtgccggca
    23041 tcatgaccat tgaaatccca atcattaaca ccgaatgaag cacgatgatg gttaatgcag
    23101 atgttccaac ttctattctc gttaagaaaa atagtgccac aactgctacg ataaaccctg
    23161 ggataacaag tgcgcgtgga ccgtatgcat cgaacaaacg cccagtaaat ggtgacatta
    23221 aaccattcag caccccaccc ggaagtaata ctaatcccgc tgaaaatgct gcgagcgcta
    23281 aactattttg caagtatagc ggtagtaaaa tcatcgttga aagaatcatc ataaagctga
    23341 taaatactaa aataagtcct aatgtgaaca ttgggtattt aaatactttc aagtccatca
    23401 aaggtttttc cattgttagt tggcgccaaa caaagagtcc aagcgcaagt ccaccaacga
    23461 taattgaaac taataccgtt gcgcttcccc aaccactttc tcccgcacta ctaaaggcaa
    23521 atacaactcc accaaaacct agcgtcgaaa gaataatcga taaaatatca attttcggct
    23581 tcgtaacaac cgaaacattt tgcataaatt tcattccgaa taataacgca ataataagga
    23641 atggcaagga aatccagaaa atccagttcc aagttaagtt ttctaaaatt agtcctgaaa
    23701 ttgtcggacc aactgctgga gcaaacataa ttaccagccc gatcatcccc attgctgagc
    23761 cacgtttatg ctctgggaaa atcagtaaaa tcgtgttaaa cattaatggt agtaatagcg
    23821 ccgtacctac tgcttgcact acacgcccaa tcattaacat tgcaaacgtt ggcgaaagcg
    23881 ccgcaatcag cgtaccagca atcgaaaaac tcactgctgt aaaaaataaa cctcgtgttg
    23941 taaaccattg taaaagtaat cccgaaatcg gtactaatat tccaagcgtt agcaaataac
    24001 ctgtcgtaag ccactgcact gtcgctgaac taatatcaaa cacctgaatc aaatcactaa
    24061 gcgccatgtt aagagcagtt tcactgaata gcccaatgaa ccccgccatc aaaaatgagg
    24121 caataatcgg tatcggccga attttctgcc cacctgttgc ttcttgttgc atatagtttc
    24181 ccccttttca gactaaaaat taagtagtct acgtttgata ttacggagat ttcgccaata
    24241 agtcaacgtt tcaagctcta tttttacgaa aaatttacaa gctatgctat acttcgaagt
    24301 agaaaagagg gattttttat ggccatttta gcatttattt taaccttcat cgtaatgatc
    24361 gagcatattt atataatgat tttagaaatg tttttcgcca ataccaaact cgcagccaag
    24421 acatttggcg tggagaagga attacttgcg aataaaaaag tacagacgct gtttgcgaat
    24481 caagggcttt ataatggctt tcttgcggca gggcttgtgt ggggattgtt tttcgcggga
    24541 gcaggatttg cggagactgt gcagattttc tttttgagtt gtgtggttgt ggcggcgctg
    24601 tttggcggag cgacttcttc taaggggatt ttggtgaaac agggcttgcc ggcggttttg
    24661 gcgttggttg cggttttgtt ggtttaggtg ttgcaggaaa aggcttggat taaatctgag
    24721 cctttttata atggaaattg aattagcgtt tcaaacaaat aatttactta tttttccaat
    24781 ttttatcaaa aacagacttg taaacgcttt ccatccatgc taaaatcgtc ctataaacaa
    24841 atatccttat tcaggaatgt taccaacttg ggcataacct agataaatgg agaattggct
    24901 ttttgggcta gttttcgatt tatctaggtt tttattttgc taaatactaa caaaaaagga
    24961 gaacaagatg aagaaaaata tttttaaatt gatgatggcg ttatgcgcag tactattaat
    25021 tgcaggttgc ggtaacagta catctgcaga caagaaagag acaaaagaaa ctaaagaaga
    25081 tggcactgtg acattttatg tagtacgtca tggtaaaaca atgctaaaca caactgaccg
    25141 tgtacaaggt tggtctgatg cggttcttac tcccgctggt gaagaagtag ttaaaagcgc
    25201 tggtaaaggc ttaaaagacg ttgatttctc tgcagcttac agcagcgaca gtggtcgtgc
    25261 tatccaaact gcaaacttaa ttttgaaaga aagcgataaa tccgctgata aagaagtaca
    25321 aactgatcca cgtttccgtg aattcaattt tggttcttat gaaggcgatt taaatgaaaa
    25381 tatgtggact gatattgcga aaagccaagg taaaacttta gaagagtggc aaaaagctgg
    25441 tatctcgcca aaagattttg ctgatagtgt agcagctctt gataaaactc gtgtgaaaga
    25501 aggcgaaaac tggcctgctg aagactatgc aactatccaa gctcgtctaa aagaaggttt
    25561 aacagatgtt gctaaaaaag aaagcaaaaa tggcgatagc aatgtattac tagtttccca
    25621 cggactaagc atcggtgcgc ttcttgatac tatcgaacca ggatacaaac tgcctgcaga
    25681 aggtatcaaa aatgcaagtg taacaaaaat cacttacaaa gatggtaaat tcactattgg
    25741 tgatgtaaat gacttaagct atgtggaaaa aggttctaaa taaatagcca gacaaaaagc
    25801 ccaaaacaat ttattttggg cttttgtttt actaaatata gacttgtgtt tcttccttac
    25861 aattactata cttagaaaaa aaggaactac ggaggatatc tagttgaaga gacgtaccta
    25921 tgttattatt actggtttag tacttatttt tgtcgctggt gctttttgga ttacaaattc
    25981 tactaatcaa tctgaccaaa aagccactca aaccgagcca ctaaaaaaaa caagtccagc
    26041 taatgttaaa accatttcat cagaagctaa gaaaaccttg aattccctag caagttcagg
    26101 agctgacaaa gcttctattt ccgatttaaa tcaattaatt aaagaactaa aatcctatcc
    26161 agttgaaaaa aatgattctg gcgcctatct ccaaaatctc acagcctgtt tagaagctgt
    26221 aaaatcgtat acgaccggca aaacagatga aaaaacgctt gggaaagtat atcctgcttt
    26281 tcttgcaagt gaacaaaaac tatcagccat cgaaaaaaca aatcaatatg attggtttta
    26341 tgccgcagcc gcaaccaatc aacaaggttt gaaagaaaaa ggtgttgtca ctttgaccat
    26401 ggttggcgat aattcatttg gaacctatcc tgaaacgccc gaacacctca aattcgataa
    26461 cgtattccaa aaaaacaacg gcaataatac ctatgtttat aaaaactgcc ttccttggtt
    26521 taaatctgat gactacactg tcattaacgc tgaaagtgcc tttacgaatg caacaaaagc
    26581 agaaaataaa aaatggcgca tcaaaagtga ccctgcacac gtcgcctttt taccagcgag
    26641 cggtgtagaa gcagcaaatt tggccaataa ccatacaatg gattacttcc aagttggtta
    26701 cgatgacaca ttaaaggctt ttaaagagaa taatattcct gttttcaata ccgacgctcc
    26761 acttgaaaca accattaaag ggatgaaaac tgttctacta ggctacgatt gccgtatgag
    26821 tcagcaatct cctgcttatc ttgaaagaat tgtaaaagac gtgaagaaat acaaaaaaga
    26881 aaatactctc gttatcgtta atatgcactg gggcgtcgaa tatcgcgaaa caccaacgga
    26941 ttatcaaagc caatttggtc atgcgatttt agatgctggt gctgatataa ttatgggctc
    27001 tcaccctcat cgcctagaaa gcgttgaaaa atataaagat aaatacatcg tttatagcat
    27061 gggcgacttt gcttttggag ctgatcctac gctactttcc cgtatgacat cgatgttcca
    27121 actgcgcttt acgaaggaag ataataaaat cgttctaaaa gatatttcta tcgttccaac
    27181 ttatgaaaat tcagatggta gtacgacaga aaacaattat caaccgctcc ctgtgtttgg
    27241 tgatgatgct aaaaaaatcg tcgatgaact taaccgtatt agtaaaccta tcgagggcgg
    27301 cgtaacagaa tacacttact tcgatccgtt ttgataataa aaagcgtaga tatcttctaa
    27361 caaagatatc tacgcttttt ttatctagct attaaagtat cgcaaattgc atgagccata
    27421 atataagaag aaacactacc aagaactagc ttttctactc ggttcatccc agtcgctccg
    27481 caaataatta aatctgcttg gaactctgct ggaatgtctg tggaaagtaa gattttcgga
    27541 ttacctttag caacaaaagt ttctacttgt ttcactcctg ccgttctagc tttttctgcg
    27601 tattcattaa cgctcgtttt taattctagt tcggcttttt cttctaagct gccatcataa
    27661 gaaacattcg gggaaaaggc acgtaaatcg acaatactag caattccaag cacaccgtct
    27721 aattttagcg ctagttccag tcctttttca aaggctaatt ttgctggttc agaaccatcc
    27781 actgctacaa gaatgcgatg atatttttcc atcatataaa acctcctaca acttttctta
    27841 tagtattcca taccctataa aaatgatttt aggcctgcca ttcattcttt ttgctaatga
    27901 attcacaata acttaagatt tgctttttct gaaaatcagc agtgccgcta aactcagcat
    27961 tactcctgcg attggtaagg tgctcttatt agtatcacca gtttgtggca aagcttttgt
    28021 tttcggttga tttgtttttt ctgctttatc tgctttttct actttgtttt ctttcgttgt
    28081 taaagaagtt ttatttgctt tttcttctgt ttttgcatta ttttctttca ctgggtcttc
    28141 tgaattttcg ctttgaggtt ctgggatgat tgttgggtcg gtttcttctt gaggtgtggg
    28201 ttttacttct ggtgttggtg gaaccggatt aacatgtccg ccgtcgctag tagtcacagt
    28261 cacaactacg gttacagggt cagctttttg gccgcgatca tttattgcat ttaaagttac
    28321 ggtgtattcg cctggggtgt ttaaatctac tactttatca aaatcactgg ttaaaactgc
    28381 atttccagtt accgaactat ggatttcttg caaaaattcg tcgactgatt tagttgattc
    28441 ttttttataa gaaatttggg aatcggctgt aataactggt ttttcatgaa cggttacttt
    28501 aactgttacg gaagttgctt ttagtcctgc agcgttttcc gcatttaatg tcacggtata
    28561 ttcacccggt acatcaagct taactacttg atcaaaatcg ctctttactg ctgtgccatc
    28621 atctgtttca gcatgtacat cttttaaaaa ttgttcttct gatgttgcat cgtattgatt
    28681 atagtcaaaa ctttcatccg ccgttaaatc tagcgtgtgg ctaatatcaa aatattgatc
    28741 atatgtcccg ctggaaatgg tataagaatt catgcttggt ggtgtcgggt aacttccagt
    28801 cggaaaatca tagcgtgcat tatattcaat ttcatcaaga ttgtcgaatt cttcttttgt
    28861 tacaccgctg actgtaatac catcatcggt aatggataga cgtgcgcttg ggagtgccac
    28921 atcattaaat cctaaataag tattacttgc ggaagtcgat ttagaaaatg gtgcaacagt
    28981 gccatcaaaa ctcgttaaag gttttggcat catcgaaaat ggtaaatata acgtttggtt
    29041 tgtttcatta taatctaact taccagattt aagtgtaatt cttggattcg tgcgccctgt
    29101 attttgccca aaagcagcaa gagctttcaa gttgccattt ttaaaacttt caaagtcatt
    29161 taaaggtcta aaatcatcaa tgccatcaaa ttgtaagaat agtgtcgtta aggctggtaa
    29221 ggaagcaagc gcagaaatat ctgtgatttt catggagttt tgcgcataaa gataagttaa
    29281 ctttggcaac ttattgaaag tcttaaagac attatgtgtc acttcgcttc cgctgatact
    29341 aagactttgt aaattaacaa gtccatttaa atctacgaaa agactatctt ttacattgtc
    29401 tccgcccact gttaagtaag tcaaagaagt ttggttttta atcggttcaa gtgtttggat
    29461 gttagtattg ttaagagata gtgttaccag atttccagct tcctccaaac ccgtcaagtc
    29521 tgtataagtg ctgccagaaa gtgtaacggt ttggatagtg ttcatttgtg ttttagtaat
    29581 tggtgcatca cttgcttgct tgagcagacc attaagatag gttttaagat ttgcatcagg
    29641 aatattaaca atattcgttt cttctgcgtg agctgctgtg gaaggatata tcattatgaa
    29701 catacaaatc gtcgcaagaa atagtttcag tgcttttttc atttatactc tccttagtgg
    29761 ttaatttctt cccaaagtat aaccgcgtta aaactaactc tcaatacgtt ttcataaaat
    29821 atttcacgtt tgatttgcct taatattcat attattcact cttattttta taggaatcgc
    29881 tttaaataaa caatggtagc gcttttttgt ctaaataaaa gaaatctgaa aattat
//
LOCUS       DASEAA010000016        29328 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.016, whole genome shotgun sequence.
ACCESSION   DASEAA010000016 DASEAA010000000
VERSION     DASEAA010000016.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 29328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29328
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.016"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..180)
                     /locus_tag="U0342_000602"
     CDS             complement(<1..180)
                     /locus_tag="U0342_000602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 family protein"
                     /protein_id="HEM2421963.1"
                     /translation="MFDWLTNSTAIIIILPVVVFILTMFFSSFKLKKSQRRIMLAADL
                     STIFLIIAVHFFMIVL"
     gene            complement(173..1066)
                     /locus_tag="U0342_000603"
     CDS             complement(173..1066)
                     /locus_tag="U0342_000603"
                     /EC_number="1.1.1.169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-dehydropantoate 2-reductase"
                     /protein_id="HEM2421964.1"
                     /translation="MANQLKVGIIGAGAMGLLYAANFADTSELTLFTRRKEQSDLLNQ
                     KGLSLKDNSELKNIHIQATVITDIKKLSEQQLLIIAVKQYSLKSILPLLQSIPERVPL
                     LFIQNGAAHLDSMPLLGNKRTILLGISEHGAGREDDTTVIWRGHGRTKYSIYQGELSE
                     AVTKTLDSNPDFPVEKHASYLDIINEKLFINAVINPLTAVLQVQNGKLLENKEWHELL
                     KTIVKEIQTVLPVENALEKVEVICQVTATNFSSMALDRMDNRMTEIDGIVLPILEKGE
                     SLPTLHALYHLIKGLEGESDV"
     gene            complement(1216..1389)
                     /gene="rpmF"
                     /locus_tag="U0342_000604"
     CDS             complement(1216..1389)
                     /gene="rpmF"
                     /locus_tag="U0342_000604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM2421965.1"
                     /translation="MAVPFRRTSKAKKRKRRTHVKLQLPGMNECSNCGEYRLSHHVCP
                     ECGQYDGKDVANS"
     gene            complement(1480..2016)
                     /locus_tag="U0342_000605"
     CDS             complement(1480..2016)
                     /locus_tag="U0342_000605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF177 domain-containing protein"
                     /protein_id="HEM2421966.1"
                     /translation="MKWSISQLKKYRDSNFTINEKADLKKFFQENNIDVRDASPVQVT
                     GELIVHPEEVTANLTMKGDWTLPCARTLEDVIYPYEVHATETFVKSKEQVLDESWHVM
                     EQDMVDLTPVVEELLLVEIPMQVFSEDALEMSNLPRGNEWEMKTEEGNLLEQIAKEPK
                     VDPRLAGLANFFDEKKED"
     gene            2146..3318
                     /locus_tag="U0342_000606"
     CDS             2146..3318
                     /locus_tag="U0342_000606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotidyltransferase"
                     /protein_id="HEM2421967.1"
                     /translation="MKATGIVVEYNPFHNGHKLHLNKARELTQADVVIAVMSGSFVQR
                     GEPAILPKWERTRMALAAGVDMVVELPVSFATQHATIFAEEAVRILDAIHVDTLFFGS
                     EHGVAEDFTLAAKKVVENEARFDEAIQLALVDKKTSYARAYTEAFKKLFGQNLLDITK
                     PNNILGFHYALAAQKQNPSISLQTIPREHAGYHDEEANHDQIASATAIRKLILAGKLE
                     EASHYLPASSIAILRNYEGPFLSWTDYWSFLQYRLIQAGSEELEGIRGVSEGIQNRMQ
                     QAATKAQNFSDFIELTKTKRYSNARLQRTALQILLNARSQTSSPYIRILGMNKTGQQY
                     LSLHKKNISLPIITTVSKAPAGLLEEELRATNIYTLAKGLENYQAGDFHIPPILTL"
     gene            3400..5640
                     /locus_tag="U0342_000607"
     CDS             3400..5640
                     /locus_tag="U0342_000607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM2421968.1"
                     /translation="MVQEYIRLRGARENNLQNISLDIPKRKITIFTGVSGSGKSSIVF
                     ETIATESQRQLNETYSAYLRNFLPKYTQPDADSIENLSTSVIIDQKRLGGNSRSTLGT
                     ITDINSILRLLFSRVGKPSIGTANLFSFNDPAGMCPDCHGVGQKVSVDLVKLLDPNKS
                     LKEGAILFPTFSVDSWYWNSYAYSGFFDVNKKIKDYTDEEYDMLLHGKDIKVFLETPM
                     GSMNATYEGLIPKFNRLYIQKEGEMSASTKKRVDKFTHIAPCTTCEGTRLSAQALSCT
                     INGANIADFTAMQLDELKATIASIDDPIAAPMVKSVTERLQHLIDIGLGYMTLDRQTA
                     SLSGGESQRVKMIRHLNSSLTDLLYIFDEPSIGLHPRDVHRLNELLVKLRDKGNTILV
                     VEHDPDVIKIADHIVDVGPHAGKHGGEIQFVGSYTDLLKSDTLTGKFLNRHLPINSKP
                     RQPKGFLTTEKSSRFNLKDIQANIPKEILTVVTGVAGSGKSTLIHSVFLKEYPDAIVI
                     DQSAAHANIRSNPATYTGIMDPIRKAFGKENDVSPSLFSYNSKGACENCKGLGFTTMD
                     LAFMDSIRTPCEVCHGKRFQDSVLQYKLNGKSISDVLELTVSEALDFFTDKKILKKIE
                     AMEEVGIGYVTLGQALSTLSGGECQRLKLANELHKKGSIYIMDEPTTGLHMSDIEHIL
                     TIIHSLVNKGNTVIVIEHNVDIIRNADWIIDLGPEGGSAGGQIIFEGAPLDLLENKQS
                     LTAKYL"
     gene            complement(5683..6723)
                     /locus_tag="U0342_000608"
     CDS             complement(5683..6723)
                     /locus_tag="U0342_000608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PDZ domain-containing protein"
                     /protein_id="HEM2421969.1"
                     /translation="MRKEWKKITAIVLLIIIIAGFFIPVPYYISKPGGTEELAPLVTV
                     DDHPNKKDGSLSLVTIAMGKANIYTYMTAKFLPYHELEKDSDIKYENESDEEYNVRQM
                     QMMNESKNNAIQVAYKAAGQEVKVTYDGVYVLSVKDDVPAADVLHAGDLITEIDGNAF
                     KSSQEFIDYIHSKKVGDTVKINYKHGDKNEQANIKLTAIDKKGTPGIGITLVDDEKIT
                     ADPTVKIDSEKIGGPSAGLMFSLEIYSRFQKNDLTDGKKIAGTGTIDPDGTVGRIGGI
                     DQKVVAADKSGAKVFFAPNDPITDEMKKSDPSIESNYDTAVKTAKDIDSKMKIVPVKT
                     FQDAVDYLEKLQ"
     gene            complement(6742..7224)
                     /gene="coaD"
                     /locus_tag="U0342_000609"
     CDS             complement(6742..7224)
                     /gene="coaD"
                     /locus_tag="U0342_000609"
                     /EC_number="2.7.7.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pantetheine-phosphate adenylyltransferase"
                     /protein_id="HEM2421970.1"
                     /translation="MGDKIAVIPGTFDPITNGHLDIIERAAKIFDVLYVSVLNNSSKK
                     PLFTIEERMEMIRQVTAHLPNVQVESASGLTVDYAATRGATAIVRGLRAVSDFEYEMQ
                     IASMNRTLNAEIETFFVMTNTKYSFLSSSMVKEVAQYQGDISELVPEIVNEQVQAKFK
                     "
     gene            complement(7227..7784)
                     /gene="rsmD"
                     /locus_tag="U0342_000610"
     CDS             complement(7227..7784)
                     /gene="rsmD"
                     /locus_tag="U0342_000610"
                     /EC_number="2.1.1.171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(966)-N(2))-methyltransferase
                     RsmD"
                     /protein_id="HEM2421971.1"
                     /translation="MRVIAGERKGHALKAVPGNNTRPTTDKVKESLFSIIGPFFDGDM
                     VLDLFAGSGGLGIEALSRGAERAVFIDQAALAIKTIRQNLEGCHFTERAEVYRNDAER
                     ALKLLHKNEWKFDLVFLDPPYKKQQLEKLLVTLEKLELVNENGRIICEHDKEAIMPDT
                     IGKFEKIKSVSYGITVLSIFEFQEA"
     gene            complement(7881..8162)
                     /locus_tag="U0342_000611"
     CDS             complement(7881..8162)
                     /locus_tag="U0342_000611"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbG family protein"
                     /protein_id="HEM2421972.1"
                     /translation="MENDRQAIVVWMNHLKQVRSLKRFGNVHYVSRKLKYAVLYCDMA
                     EVEDISNKVSRFHYVKRVEMSFRPFLKTEYESKKEMMYEHKNEDVQISI"
     gene            complement(8193..8642)
                     /locus_tag="U0342_000612"
     CDS             complement(8193..8642)
                     /locus_tag="U0342_000612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF family regulator"
                     /protein_id="HEM2421973.1"
                     /translation="MLATMENMALLDLSDELASMILNSEEAQNYKLAKEALLNDATSQ
                     KNIRQFIRIKEQYEEVQRFGRYHPDYKEVTRKTRAYKREVDMDQNVAAFRRAEMDLQS
                     LLDEISLLLASAVSENIKVPTGNPFFETKSACSTGGCGSGGGCGCSA"
     gene            complement(8690..9745)
                     /locus_tag="U0342_000613"
     CDS             complement(8690..9745)
                     /locus_tag="U0342_000613"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CAP domain-containing protein"
                     /protein_id="HEM2421974.1"
                     /translation="MKFIMRVAVLLIICLFIGYNTDLFFSKSVEKNTAEDTATKSNFP
                     DNKKTTNENPKQVQDSSSLARFINKNVSELKKEFGDPVRVDKTAYGYDNYIYSQPGTS
                     YMQVGVTKNIVQTIYALGQDLNVMPYTIGMSTEKVFTDANLQSEISFNYKDSYYKFEL
                     SEEDLNARPIVNIGSGVYAQLNFDKFKSKLISVRYLNKLSFVKMRPYELSYQGEIYEE
                     KLTPADWNAIDDASSKQVLEITNVIRDRYGIEEVAWDESVAKVAYGHSVDMKKNDYFD
                     HTSPTQGDLSKRLSKGDVKYTKAGENIAYNYVDSAAAVEGWLNSKGHRENLLDGSYTY
                     MGAGTYRKYYTQNFIIK"
     gene            complement(9893..10798)
                     /locus_tag="U0342_000614"
     CDS             complement(9893..10798)
                     /locus_tag="U0342_000614"
                     /EC_number="2.5.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protoheme IX farnesyltransferase"
                     /protein_id="HEM2421975.1"
                     /translation="MNQIEKTGELSASRFTVRDFTELVKIGIVNSNTITAFTGMWLAF
                     QLNGISFIQNVDVIFFTIVGSALIVAASGAFNNVIDRDIDGIMERTKNRPTMTGKISG
                     KRALMVALVLGVVGTIMLFMTTWQAGVLGVIGVFLYVVVYSLYAKRKLVSNTVIGSFS
                     GAVPPLIGWFAVEPSFSIVPIMLFLVMFCWQPPHFYAIAIKRKEEYAAAGIPMLPVVK
                     GIERTKKSMFFWVILLTILPFFMFELGIVYVVLATLLNIGWLALSIYGFKMEDSIKWA
                     KWMFVYSLNYMTILFVAMVVISIFL"
     gene            11034..11951
                     /locus_tag="U0342_000615"
     CDS             11034..11951
                     /locus_tag="U0342_000615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme A synthase"
                     /protein_id="HEM2421976.1"
                     /translation="MKKFLKVWSVLTIICMTVVVFGGALVTKTGSADGCGNSWPLCNG
                     QLVRLTDVTPEKLIEFMHRMTTGISSIFVIVLAICAWIYMKNRRETKPLAIIAVLFLI
                     IQALMGMAAVVWGQNPYIMALHFGISIICYASIVLLALMIFEVDRKFDARNLVMGTKL
                     RINIYALTIYTYLAVYTGALVRHEKASMAVPVWPFENGHFIMPTSVQDYVQYFHRLAA
                     FILIVWLLYVTWLVFRDYRRYRVLTFSMVLSLVFIALQAVTGALSVYTGVNLYIALAH
                     SLIITMLFALLCYLCLLASRSKSNRLRIK"
     gene            12059..12802
                     /locus_tag="U0342_000616"
     CDS             12059..12802
                     /locus_tag="U0342_000616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="potassium channel family protein"
                     /protein_id="HEM2421977.1"
                     /translation="MDKTKRKMIYETFMLILIVLSLALLPYRNSFTFILNWIIWVIFT
                     LDYLVRLYRADNKWHYVKTHPFQLIAIIPFYGGFRAARIVSFVHLLSITAMGRRYIVP
                     IYSFFRSNGLNRFLMIFVLLVIIIPVPMVFIEPEINNYPDALWWAIVTATTVGYGDIV
                     PVTPIGRILASIMMLFGIAFIGMITSTITNFFRAKKATTSSTQRASKITQLIADTPDL
                     TKEEIAVVEQFLALRKKELADENIKSDSE"
     gene            complement(12808..13449)
                     /locus_tag="U0342_000617"
     CDS             complement(12808..13449)
                     /locus_tag="U0342_000617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MOSC domain-containing protein"
                     /protein_id="HEM2421978.1"
                     /translation="MERKIMHLAVGKPKELNLSNNKRMMTGIEKKLVQSASLTTTGFE
                     NDAPHNLKYHGGPDRTVCIYPYEHYAKWAAMFGEELQVTAFGENLITTNMLESSVQIG
                     DKFQIGETVIQITEARNPCSTIEKFNGIPNLYKAIHKTGLTGYLCRTITPGIIHATDE
                     IKQIHQESHGVTVAFCHDKVLHKNGTKEDLERILAVEALSERYRNQVEKQIKK"
     gene            complement(13468..14085)
                     /locus_tag="U0342_000618"
     CDS             complement(13468..14085)
                     /locus_tag="U0342_000618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1775 domain-containing protein"
                     /protein_id="HEM2421979.1"
                     /translation="MKKIISSIVVLLAVFIIPFQASAHVSVLPSESTVDSWETYTMKV
                     PSEKDVASKKIVLKVEKGVSFESYEPVPGWTTTVDKKNGTVTWQTEGNGIEKGQFQRF
                     SFIAKNPSEEGEIAWNAYQYYEDGSIVEWVGAEDSETPHATTKIVKESSKSATGSHGE
                     VVAGAENTAGDTSSTGDNTILLWTAVAISVIALITGILAILSRKK"
     gene            complement(14098..15723)
                     /locus_tag="U0342_000619"
     CDS             complement(14098..15723)
                     /locus_tag="U0342_000619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper resistance protein CopC"
                     /protein_id="HEM2421980.1"
                     /translation="MKLLKRVSFFLIILYLLIVPVQHVSAHAYLENSNPADQSHIQTA
                     PEKVTLVFNEEIEADFPLIEVKDSSGKQVETGKTTVSKKNNHMVEASLPADLKADVYS
                     VSWRVVSADGHAVTGIISFKLGDTKATFQAAEVPSSGADLQISSIQKAVLYIGFSLFI
                     GVLLFGLGLYPRKEQLTEKISGRLKKVTWVALALLGVALFMQLFIQTSITTGVSISES
                     FGPSKLVAFLTTKTGYIWISELIVWLLLAIFTIMMFFKKKQWSWFALLTESALIGYLI
                     FAKAQNGHAAASADKIVSISADMLHMIAASVWVGGILVLLFVLPQTGKARAVWSRFAI
                     VAIIAVASILVSGLLMAVMNLGQMANLFTTNYGKILLFKIGLFLLMALLGLGHYIYIK
                     LKNQRLPFKTILMELIIGTIILVVASVLTNVQTPPPPAPKAFDETIAAEGEKAKINLR
                     VEPATVGQNQFIITFTSADGSAKTDFEQVTITTKSTKTDEKSTFQAKLANDTQYFAEG
                     LYINQTGKWEITVHGLTKDFTDINQTFTTNITQ"
     gene            15863..16054
                     /locus_tag="U0342_000620"
     CDS             15863..16054
                     /locus_tag="U0342_000620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421981.1"
                     /translation="MLRYIELFFMFAFVTLITMWIQALLAKWKPTILRSFWLRTLTFI
                     IIGYALMAPTLYIGSLLLK"
     gene            16116..16502
                     /gene="mscL"
                     /locus_tag="U0342_000621"
     CDS             16116..16502
                     /gene="mscL"
                     /locus_tag="U0342_000621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="large conductance mechanosensitive channel
                     protein MscL"
                     /protein_id="HEM2421982.1"
                     /translation="MKKMLVEFRDFALKGNVLDLAVAVVIGAAFGKIVSSLVDNIIMP
                     LVGVLLGGLDFTDLSFKVGKSVIQYGAFIQSIVDFVIIAFAIFIFVKVLTSFIKKKEQ
                     TVEETPVPPTEEYLKEIRDLLKEQQK"
     gene            complement(16637..17029)
                     /locus_tag="U0342_000622"
     CDS             complement(16637..17029)
                     /locus_tag="U0342_000622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421983.1"
                     /translation="MNWTRISSIVIVGFTAIGAIYGGLSMVFMPSGGLLSLSTGLLDG
                     SPFVDYLVPGIFLFVFVGLFHLAALIYLLKKLPRTKEVMFAAAAVLAVWMIVQLLIIG
                     YVFILQIIFLVVAAVEMFLAIQLKKQQR"
     gene            complement(17074..17283)
                     /locus_tag="U0342_000623"
     CDS             complement(17074..17283)
                     /locus_tag="U0342_000623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421984.1"
                     /translation="MRENSIIGRIIAFCAICFAFFNPKTVTYWLGVRAESGPAWYLTT
                     VVACGIAVFVLIDLIKKIKRRKTAE"
     gene            complement(17434..18411)
                     /gene="bsh"
                     /locus_tag="U0342_000624"
     CDS             complement(17434..18411)
                     /gene="bsh"
                     /locus_tag="U0342_000624"
                     /EC_number="3.5.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="choloylglycine hydrolase"
                     /protein_id="HEM2421985.1"
                     /translation="MCTSITYTTKDHYFGRNFDYELSYKEVVVVTPKNYPFHFRKVED
                     IEKHYALIGIAAVMENYPLYYDATNEKGLSMAGLNFSGNADYKDFAEGKDNVTPFEFI
                     PWILGQCATVKEARRLLQRINLVNISFSENLPLSPLHWLMADQNESIVVECVKDGLHI
                     YDNPVGVLTNNPTFDYQLFNLNNYRVLSSETPENNFSNEIDLDAYSRGMGGIGLPGDL
                     SSMSRFVKATFTKLNSVSGDSESESIGQFFHILGSVEQQKGLCDVGGEKYEHTIYSSC
                     CNIDKGIYYYRTYGNSQITGVDMHQEDLESKELAIYPLVNEQQLNIVNK"
     gene            complement(18666..20294)
                     /gene="groL"
                     /locus_tag="U0342_000625"
     CDS             complement(18666..20294)
                     /gene="groL"
                     /locus_tag="U0342_000625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465592.1"
                     /note="60 kDa chaperone family; promotes refolding of
                     misfolded polypeptides especially under stressful
                     conditions; forms two stacked rings of heptamers to form a
                     barrel-shaped 14mer; ends can be capped by GroES;
                     misfolded proteins enter the barrel where they are
                     refolded when GroES binds; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chaperonin GroEL"
                     /protein_id="HEM2421986.1"
                     /translation="MAKDIKFSEDARRAMLRGVDQLANAVKVTLGPKGRNVVLEKKFG
                     SPLITNDGVTIAKEIELEDPFENMGAKLVSEVASKTNDVAGDGTTTATVLAQAMIQEG
                     LKNVTAGANPVGVRRGIEKAVATAIEELKAISKPIESKESIAQVAAISSGDEEVGKLI
                     AEAMERVGNDGVITIEESKGFATELDVVEGMQFDRGYTSPYMVTDSDKMEAVLEKPYI
                     LITDKKINNIQEILPVLEQVVQQGRPMLIIAEDVEGEAQATLVLNKLRGTFNVVAVKA
                     PGFGDRRKAMLEDIAILTGGQVITEDLGLELKTATVDQLGTANKVVVTKDDTTIVEGA
                     GDSTQISARVNQIRAQMEETTSEFDREKLQERLAKLAGGVAVVKVGAATETELKERKL
                     RIEDALNSTRAAVEEGIVAGGGTALVSIYNKVAALEAEGDVETGINIVLRSLEEPVRQ
                     IAHNAGLEGSVIVERLKHEAVGVGFNAANGEWVNMIDAGIVDPTKVTRSALQNASSVA
                     ALLLTTEAVVADKPDENGPAAVPDMGMGGMGGMM"
     gene            complement(20328..20612)
                     /gene="groES"
                     /locus_tag="U0342_000626"
     CDS             complement(20328..20612)
                     /gene="groES"
                     /locus_tag="U0342_000626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="co-chaperone GroES"
                     /protein_id="HEM2421987.1"
                     /translation="MLKPLGDRVVIEVLEAEEKTASGIVLPDSAKEKPQSGKIVAVGS
                     GRVLDNGTKEPLEVAEGDTVIFAKYSGTEVTYEGTDYLILRESDILAITK"
     gene            20847..21533
                     /locus_tag="U0342_000627"
     CDS             20847..21533
                     /locus_tag="U0342_000627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465594.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM2421988.1"
                     /translation="MAKRYITIVLVYLLLLFSASVGIPIVQHILLSTTSLSAESAASY
                     GMVIWSIFSNLLSLAIIIPMLYRKPKENKIEIGEKTKPLLSIVWIVGGVIGLYVAQII
                     CSVIITMISGELSNSANTELLVDLTKAAPIFLIFISILGPILEELVFRKVFFGGLSNV
                     TNIHVAAVISSLFFGLLHGDISFLLTYFVIGLILCFLYTKTKRIVVSMGAHILMNTIV
                     LLLSLGIIGG"
     gene            21535..21732
                     /locus_tag="U0342_000628"
     CDS             21535..21732
                     /locus_tag="U0342_000628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4305 domain-containing protein"
                     /protein_id="HEM2421989.1"
                     /translation="MKNSLIKQSFLYFALGLVFVYFVVVRVADYGYDVLACILIIMTL
                     MDFGIGIGLIITGLKRRKKNL"
     gene            complement(21766..22413)
                     /locus_tag="U0342_000629"
     CDS             complement(21766..22413)
                     /locus_tag="U0342_000629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-sensing transcriptional repressor Rex"
                     /protein_id="HEM2421990.1"
                     /translation="MMEETTKIPQATAKRLPLYHRYLKYLDESGKERVSSAELSEAVK
                     VDSATIRRDFSYFGALGKKGYGYNVSYILDFFSKTLSQDKQTNVALIGVGNLGTALLH
                     YNFMKNNNIKIVAAFDVDPAKVGSVQQDIPIYHLNDMEEIVRENGVEVVILTVPADEA
                     QVTVDRLIEADVKGILNFTPARISVPKQVRVHHIDLTTELQTLIYFLENYPAKTE"
     gene            22723..24675
                     /locus_tag="U0342_000630"
     CDS             22723..24675
                     /locus_tag="U0342_000630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F family ATP-binding cassette
                     domain-containing protein"
                     /protein_id="HEM2421991.1"
                     /translation="MILLQVQQISKFFGAEVILDNIKLEVKTGDRIALVGRNGAGKST
                     LLKIIAGKMSYDGGTISKPKSVEIGYLAQNTGLESSKTIWDEMLSVFDSLRKMEADLR
                     KMELRLGEPELYNDPEKYQALMTDYDTLQHTFKESGGYTYEAEIRSVLNGLRFYPEDY
                     EVEIASLSGGQKTRLALAKLLLAKQDILVLDEPTNHLDIETLAWLETYLQNYHGSLLI
                     VSHDRYFLDKVVNQVYEISRTKIDHYKGNYSSFVNQKQAKLEQMWKEFDKQQKQIAKL
                     EDFVARNIVRASTTKRAQSRRKQLEKMDVLGRPQGDEKAAHFGFQFEKQTGKDVLMVD
                     QLSIGYAKDKRIASNLTFEMKRQDSLALVGPNGIGKSTLLKTLIRDIPALSGEFHFGA
                     GVKIGYYDQEQAKLTSNKTVLMELWDDYPELNEVNVRTTLGNFLFSDDDVLKNVQSLS
                     GGEKARLALAKLTLLEANVLILDEPTNHLDIESKEVLEAALIDFEGTILFVSHDRYFI
                     NRIASKIVELAPEKATVFLGDYDYYQEKLAEEKELARLDAEDRRKKGEQVEATSSVRK
                     LNYQEEKEQQKLLRQRKRKLEEVEKSMEATDKKIAELELQLTNPEVFQDHEKALEITQ
                     ELDAVKADGEKLMEEWEQISEELESM"
     gene            24700..25659
                     /locus_tag="U0342_000631"
     CDS             24700..25659
                     /locus_tag="U0342_000631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465598.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2421992.1"
                     /translation="MKKILIISSSIIVGLLVIITICASFYLYSYALARDNSSMNDTAT
                     TDETTATAKLAKKNREENVAWMEKQNLTQWTETSADDLKLVATYLAADKPSNTTIILA
                     HGYRGKSGKVEMAGLARMYHEKFGYNVLMPDARAHGKSEGENIGFGWPERKDYVQWID
                     QVIDKNGTDTQIALHGVSMGSSTVLMTSGEKLPKQVKSIIADCGYTSMDAELSYQLKA
                     MFHLPKFPIIPTASLINKFKEGFFFSEASAVDAVAKTDVPIFYIHGDADAFVPTNMVD
                     ELYKATNSYKEKWIVKGAEHGQAFTVDPKTYEEKVRQFLNKTM"
     gene            complement(26204..27226)
                     /gene="tsaD"
                     /locus_tag="U0342_000632"
     CDS             complement(26204..27226)
                     /gene="tsaD"
                     /locus_tag="U0342_000632"
                     /EC_number="2.3.1.234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465599.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     transferase subunit TsaD"
                     /protein_id="HEM2421993.1"
                     /translation="MKKNTLILGIESSCDETAASVVKNGNEIISSVVASQIESHKRFG
                     GVVPEIASRHHVEQITLVIEEALKQANVTMDDLDGIAVTEGPGLVGALLIGVNAAKTL
                     AFMHNLPLVGVHHIAGHIYANCFETEFKFPLLSLVVSGGHTELVLMKADNEFEIIGET
                     RDDAAGEAYDKVARTLGLAYPGGVQIDKLAKDGEDTFHFPRAMMDEGSFDFSFSGLKS
                     SFINTLHNLRQRGEEPNPNDMAASFQASVVDVLVSKTIRAAKQYDVKQLLLAGGVAAN
                     QGLRERLIQEVKLELPETELIIPPLALCGDNAAMIAAAGTVSFLQGKRSGFDMNANPG
                     LLLEDI"
     gene            complement(27223..27678)
                     /gene="rimI"
                     /locus_tag="U0342_000633"
     CDS             complement(27223..27678)
                     /gene="rimI"
                     /locus_tag="U0342_000633"
                     /EC_number="2.3.1.266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465600.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosomal protein S18-alanine
                     N-acetyltransferase"
                     /protein_id="HEM2421994.1"
                     /translation="MSLDEALLFREATVTDLKSIMNVENAAFTVPWTEAAFRNEFIIN
                     QYAYYLLAIYKEQVVGYAGVWLVLDEGHITNIAIHPDYQGNHYGEALLREMIRVAKER
                     GVVRMTLEVRVSNDVAQGLYKKLGFQDGAIRKNYYPDTKEDALVMWVDL"
     gene            complement(27675..28367)
                     /gene="tsaB"
                     /locus_tag="U0342_000634"
     CDS             complement(27675..28367)
                     /gene="tsaB"
                     /locus_tag="U0342_000634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465601.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     dimerization subunit type 1 TsaB"
                     /protein_id="HEM2421995.1"
                     /translation="MILGMDTSSDTMAIALFNEGVVIGEYTTNLKKNHSVRLLPAIAV
                     LMEECGVKPTDLEKIAVAKGPGSYTGLRIGVTVAKTMAWDAGIPIVGISSLALLAENG
                     LYFPGKVVALMDARRSNVYAGVYQASEGEMQSVIADGHIALTELLEQFLSSEEPILFV
                     GTLTEQICVTVTEVLGERAVFAQADYTYSRASSLVKLAENLDGEPADNFVPDYLKLAE
                     AESKWLESRGSE"
     gene            complement(28364..28825)
                     /gene="tsaE"
                     /locus_tag="U0342_000635"
     CDS             complement(28364..28825)
                     /gene="tsaE"
                     /locus_tag="U0342_000635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465602.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (adenosine(37)-N6)-threonylcarbamoyltransferase complex
                     ATPase subunit type 1 TsaE"
                     /protein_id="HEM2421996.1"
                     /translation="MEFELIMTSERETRLRAKQLGEQLTAGDVILLEGDLGAGKTTFT
                     KGLGEGLLIPQMIKSPTFTIIREYKKGRLPLYHMDVYRLEDASADELGLEEYFYGAGV
                     SVVEWAQFVREDLPEEYLEIQLFHIDENTRKLVVKPVGERYEQLAMEVFGK"
     gene            complement(28930..>29328)
                     /locus_tag="U0342_000636"
     CDS             complement(28930..>29328)
                     /locus_tag="U0342_000636"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2421997.1"
                     /translation="VKADLKVIAESQGSDAVADFDSTYTEMKSSLTDAAKELKENKTY
                     LINNKLTVKSGKENSLDTLTLQTKIEDKSDASAPESISFTVKTKAEEFVPIEDFPTKD
                     EVISSEELNKIITDVTAKMYGGMDISGTNY"
BASE COUNT         8558 a         6029 c         5314 g         9427 t
ORIGIN      
        1 tagcacaatc atgaaaaaat gaacagctat aatcaagaaa atagtggata agtcagcggc
       61 caacataatt ctccgctgac ttttctttag tttgaaactg gaaaaaaaca tcgtcaaaat
      121 aaacaccaca actggtaaaa taataattat tgctgttgaa ttagttaacc aatcaaacat
      181 cgctttctcc ttccaaccct ttaattagat gatataacgc atgaagcgta ggaagtgact
      241 cccctttttc taaaattggc agcacgattc catcaatttc tgtcattcga ttatccattc
      301 ggtcaagagc catcgaagaa aaattagtag ctgtcacttg gcagattact tccacttttt
      361 ctaaagcatt ttctactggc aaaaccgttt gtatttcttt tacaatcgtc tttaataact
      421 cgtgccattc tttattttca aggagctttc cattttggac ttgaagaaca gctgtgagcg
      481 gattaattac tgcattaata aataattttt catttataat gtctaagtaa ctagcatgtt
      541 tttcaactgg aaaatctgga tttgagtcta atgtttttgt taccgcctca cttagttcgc
      601 cttgataaat actatacttt gttcggccat gaccacgcca aatgactgtt gtatcatctt
      661 cccgccccgc cccgtgttcg ctaataccta gcaaaatagt tcgtttatta ccgagtagcg
      721 gcatgctatc taaatgcgcc gctccatttt ggatgaatag taacggcact cgttcaggta
      781 tcgactgtag cagtggcaaa atgcttttta gtgagtattg tttaactgcg ataattaata
      841 attgttgttc tgataacttt ttaatatctg ttattactgt ggcttgtata tgtatatttt
      901 ttaattcgga attatctttt aaagaaagac ctttttgatt taataaatcg ctttgttctt
      961 ttctccgcgt aaaaagagtg agctcggatg tatcggcaaa atttgctgcg tataaaagcc
     1021 ccatcgctcc tgctccaata attcctactt ttagttggtt cgccatttag ttcagctcca
     1081 tattgattaa tgcttttatt ttatcagaag tagcattctt ttgcactttt gtgcgcaaac
     1141 aaaaacctcg aaagacccat ggcgtctttc gaggttcgtc ttcaacaagt gaaacgtcac
     1201 ttgtttttag caatattagc tgtttgctac atctttgcca tcatattgtc cacattctgg
     1261 gcatacgtga tgggaaagtc tgtattcgcc gcaattcgag cattcgttca tgcccggaag
     1321 ttgaagttta acgtgtgtac gacgcttacg ctttttggct tttgaagttc ttctaaaagg
     1381 tactgccatt tccttacacc tccttgacga taactaagta cttgtatcgt taatctaaga
     1441 aaaataaatt ccttaatata ttccagcttc acggggagtt tagtcttctt ttttctcatc
     1501 gaaaaaattg gctaatcccg caagacgagg atccactttt ggttcttttg ctatttgttc
     1561 tagtaggtta ccttcttctg ttttcatttc ccattcattg cctcgtggaa ggttactcat
     1621 ttcgagtgcg tcttcactga aaacttgcat cggaatttcg actagtaaaa gttcttctac
     1681 tacaggggtt aaatcgacca tatcctgttc catcacatgc caagattcat ctagaacttg
     1741 ttctttggat ttcacaaagg tttccgtcgc atgcacttca taaggataaa taacatcctc
     1801 aagtgtacga gcacatggaa gtgtccaatc gcctttcata gtcaggttag cggtaacttc
     1861 ttctgggtgt acaattagtt ccccagttac ttgtacgggg cttgcatcac gaacgtctat
     1921 attgttctct tgaaagaact tttttaggtc agctttttca ttaatcgtga agttgctgtc
     1981 acgatatttt tttaattgac tgatagacca tttcatccta catcactcca agcgcaacac
     2041 aaaatattat agctttttta aaggcttttg tcaatgcttt ttcggggagt aaaaccgctg
     2101 ccttcatttt atgctaaaat agattatcta aaggagggaa ccgaaatgaa agcaactgga
     2161 attgtggtgg aatataaccc ttttcataat gggcataaac tacatctaaa taaagcgcgc
     2221 gagttaactc aagcagatgt ggtgattgcg gtaatgagtg gctcgtttgt acaacgaggc
     2281 gaaccagcga ttttgccaaa atgggaacgt actaggatgg ctctcgctgc tggcgttgac
     2341 atggtggttg aactccctgt ctcattcgcg acacaacatg cgacgatttt cgcagaagaa
     2401 gcagttcgta ttttagatgc cattcatgtg gatacgctgt tttttggcag tgaacatgga
     2461 gttgcggaag attttacatt agctgcgaaa aaagtagtcg aaaacgaagc ccgttttgat
     2521 gaagcgattc agctggcgtt agttgataag aaaacttctt atgctagagc ttatacagaa
     2581 gcttttaaaa agttgttcgg ccagaacttg ctggatatca cgaaacctaa taacattctc
     2641 ggtttccact acgcccttgc tgcccagaaa caaaacccgt ccatttctct tcaaaccatt
     2701 cctcgtgaac atgcaggata ccatgacgag gaagcaaacc atgaccaaat cgcaagcgcg
     2761 accgcgattc gaaaattaat acttgctggg aagttagaag aagctagcca ctatctccct
     2821 gcttcttcta tagctatttt acgcaattat gaggggccat ttttatcgtg gacagattat
     2881 tggtcattcc tgcaatatcg gttaattcaa gcaggctcag aagaactgga aggaattcgc
     2941 ggtgttagtg aaggaattca aaaccggatg cagcaagcag cgactaaagc gcaaaacttc
     3001 tctgatttta tagaattaac caaaacaaag cgatacagta atgcgcgatt acaacgaacg
     3061 gctttacaaa ttttattaaa tgcgaggagt caaactagct ccccttacat ccgaatactc
     3121 ggcatgaata aaacggggca acaatatcta tcgcttcata agaaaaatat ttctctccct
     3181 attatcacga cggtttccaa agcaccagct gggcttttag aagaagaatt acgtgcgaca
     3241 aacatttata cgctggcaaa aggactggaa aattatcagg ctggcgactt tcatattcca
     3301 ccaattttaa ccttgtaatc tttacaaggt ttttggttga cttttatggg gctattttgc
     3361 taagatgttt gtccgactca aaaaacagga ggtatgtgta tggtacaaga atatattcga
     3421 ttaagaggag cgcgtgaaaa caatctccaa aatatttccc tagatatccc caaacgaaaa
     3481 atcactattt ttactggtgt atctggttcc gggaaatctt ctattgtatt tgaaactatt
     3541 gccacggaat cgcaaagaca gttaaacgaa acatacagcg cctatcttcg taatttcctt
     3601 ccgaagtata cgcagccgga cgcagattca attgaaaacc tctccacctc tgttattatt
     3661 gatcaaaaac gacttggcgg taattcccgc tccacccttg gtaccatcac ggatattaat
     3721 tcgattttgc gattactttt ctcgcgtgtc ggcaagccta gtatcgggac agcaaattta
     3781 ttttctttta acgaccctgc tggtatgtgc cctgattgcc atggtgttgg acaaaaagtt
     3841 tcggttgatt tagtcaaatt acttgatcca aataaatcgc tcaaagaagg cgccatctta
     3901 tttccgacgt tttcggtaga ttcatggtac tggaattcct atgcttattc cggctttttt
     3961 gatgtgaata aaaaaataaa agattatact gacgaagaat acgatatgtt gttacatggg
     4021 aaagatatta aagttttcct agaaacaccc atgggaagca tgaacgctac atatgaaggg
     4081 ttgattccaa aattcaatcg tttgtatatt caaaaagaag gcgaaatgtc cgcctctact
     4141 aaaaaacgtg tcgataaatt cacccatatt gcgccttgta caacttgcga aggcacgaga
     4201 ctctccgcgc aagcattatc ttgtacaata aatggtgcaa atatcgccga cttcacagcg
     4261 atgcaattag atgaattaaa agcaacgatt gcgagtattg atgaccctat cgctgctcca
     4321 atggtcaaaa gtgtcacaga gcgattgcaa catttgattg atattggtct tggttatatg
     4381 acacttgacc gccaaactgc ttctctttct ggtggtgaat cgcaacgtgt caaaatgatt
     4441 cgtcatttga atagcagctt gactgatctg ctttatattt tcgatgaacc aagtatcggt
     4501 cttcatccac gagatgttca tcgactcaat gaattactcg tgaaattgcg cgacaaagga
     4561 aatacgattc tcgtggtgga acatgaccca gatgtgatca aaatcgccga ccatattgtc
     4621 gatgtcggtc cgcacgcagg aaaacatggc ggtgagattc agtttgtcgg aagttacacc
     4681 gatttgctga aatcagacac actaactggc aagttcctca atcgccattt accaattaat
     4741 agcaaaccga gacaaccaaa aggtttttta acaactgaaa aaagtagtcg ctttaaccta
     4801 aaagatattc aggccaacat tccaaaagaa attcttactg tagtaactgg cgtggctggt
     4861 tcgggtaaga gtaccttgat tcattctgtt ttcctaaaag aatatccaga tgcgatagtg
     4921 atcgaccaat cagccgctca tgccaatatt cgctctaatc ctgccaccta tactgggata
     4981 atggacccga ttcgaaaagc atttggaaaa gaaaatgatg tcagtccatc actctttagt
     5041 tacaattcca aaggcgcctg cgaaaactgt aaaggacttg gtttcacaac tatggattta
     5101 gcttttatgg attcgattcg cacaccttgc gaagtatgtc acggcaagcg attccaagat
     5161 tctgttttgc aatataagct aaatggtaaa tccattagcg atgtgttaga actaactgtc
     5221 tcagaagcac tcgatttctt tacggataaa aaaatcttga agaaaattga ggcaatggaa
     5281 gaggttggaa ttggttatgt cacgcttggc caagcactta gcaccttatc aggcggtgag
     5341 tgccaacgtt taaaactcgc caatgagctt cataaaaaag ggtcgattta tattatggat
     5401 gaaccgacga ctggtcttca tatgtcagat atcgaacata ttttgacgat tatccactca
     5461 cttgtaaata aaggaaatac cgttattgta attgaacata atgtcgatat tattcgtaac
     5521 gcagactgga ttatcgacct tggcccagaa ggcggaagtg ctggcggaca aattatcttc
     5581 gaaggcgctc cccttgattt acttgaaaat aaacaatcct taactgccaa atatctttaa
     5641 taaaaaaagc cgttttgtct atagcagaca aaacggcttt ttttattgta gtttttctaa
     5701 ataatccaca gcatcttgga aagttttaac tggaacgatt ttcattttgg agtcaatgtc
     5761 tttcgctgtt ttaactgctg tatcgtaatt actttcgata cttgggtcgc tttttttcat
     5821 ttcatcggta attggatcat tgggagcaaa gaaaaccttc gcaccgcttt tatctgcggc
     5881 aacgaccttt tgatcaattc cgccgattct accaacagtt ccgtcagggt caatcgtacc
     5941 agttccggcg atttttttgc catctgtaag atcatttttt tggaaacggc tgtaaatttc
     6001 taaactgaac attaaaccgg cagaaggtcc accgattttt tctgagtcga ttttcacagt
     6061 tggatctgcg gtgatttttt catcatccac aagcgtgata ccgattcctg gagtgccttt
     6121 tttatcaatt gctgttaatt tgatgttggc ttgctcattt ttgtcgccgt gtttgtagtt
     6181 tattttgact gtgtctccca cttttttact gtgaatataa tcaataaatt cttggcttga
     6241 tttaaacgca ttcccatcaa tttctgtgat taggtcgcca gcgtgaagga catcggctgc
     6301 tggaacgtca tcttttacgc ttaatacgta tacgccatca taagtgactt tgacttcttg
     6361 accggctgct ttataagcca cttgaatggc attatttttg gattcgttca tcatttgcat
     6421 ttggcgaacg ttatattctt cgtcgctttc attctcgtat ttgatatcgc tatctttttc
     6481 taactcatga tatggcaaaa atttagcggt catatatgta taaatattcg cttttcccat
     6541 tgcaatcgtc actagactga gcgaaccgtc ttttttattt ggatggtcat caactgtaac
     6601 gagtggagca agttcttccg taccaccagg ttttgaaata taatacggaa ctggaataaa
     6661 aaagcccgct ataataataa ttaacagcac tatcgccgtt atttttttcc actctttacg
     6721 cattttctgt ccatctccca cttacttaaa ttttgcttgt acttgttcgt tcactatttc
     6781 aggaacaagt tcgctgatat caccttgata ctgcgccact tcttttacca tactggaact
     6841 taaaaaagaa tatttcgtat tagtcatgac aaaaaaagtt tcgatttccg cattgagcgt
     6901 tcggttcatc gaagcaattt gcatctcgta ttcaaaatca ctcaccgctc gaagccctct
     6961 gacaattgca gtagccccgc gcgtagcagc ataatcaaca gtcaatccgc tcgcactttc
     7021 cacttgaaca tttggcaaat gagcggttac ttgtctaatc atttccatcc gctcttctat
     7081 cgtgaaaagt ggttttttgg atgagttgtt taaaacggaa acatacagca catcaaaaat
     7141 cttcgctgcc cgttcaataa tgtctaagtg cccattcgta atcggatcaa atgtcccggg
     7201 aataacggca attttgtcac ccatttctac gcctcctgaa attcaaatat agataaaaca
     7261 gtaattccat aagaaactga tttgattttc tcgaatttac cgattgtatc tggcatgatt
     7321 gcttctttgt catgctcgca aataattctt ccattttcgt taactaattc taatttttct
     7381 aaagttacta gtaatttttc taattgttgc tttttatatg gtggatctaa gaaaacaagg
     7441 tcgaatttcc actcattttt atggagtaat ttgagtgctc gttcggcatc atttcggtat
     7501 acttccgcac gctctgtaaa atggcatcct tctaagtttt ggcggattgt tttaattgcg
     7561 agcgctgctt ggtcaataaa aacagctcgt tcggcacctc tactcaacgc ttcgattcca
     7621 agcccaccac tgccagcaaa taaatcaagc accatatccc cgtcaaaaaa gggaccaata
     7681 atcgaaaata aggattcttt tactttatct gttgttggtc tcgtattgtt tcctggaaca
     7741 gcttttagag cgtgtccttt tcgttctcct gcaatgactc tcatgttttt gcacaacctt
     7801 tacttcaatg tcttttttac tttatcacaa atagaagcaa aaaaacagca agactagttg
     7861 agatagtctt gccgttttgg ttagatactg atttgcacat cttcgttttt gtgttcgtac
     7921 atcatttctt ttttggattc gtattctgtt tttaagaacg gacggaaaga catttccacg
     7981 cgtttcacat aatgaaaacg agaaactttg ttagagatat cttctacttc agccatatca
     8041 caatataata ccgcatattt caacttgcgc gatacataat gcacatttcc aaatcgcttc
     8101 aaagatctaa cttgtttaag atgattcatc caaacgacga tagcttgtct atcattttcc
     8161 attgtttaag ccccttcttt ttaggataag ctttacgctg aacaaccgca gcctcccccg
     8221 ctgccacatc cacctgtaga acaagcagat tttgtttcaa aaaacggatt accagttggt
     8281 actttgatat tctctgaaac tgcacttgcg agaagcaggc tgatttcgtc caagagagat
     8341 tgtaaatcca tctctgcccg gcgaaaagct gccacatttt gatccatatc gacttcgcgt
     8401 ttataagcac gagtctttct ggttacttct ttatagtcag gatgataccg gccgaaccgc
     8461 tgcacttcct cgtattgttc ttttattcgt atgaattgac gaatattttt ttgtgaagta
     8521 gcgtcattta gcaacgcttc cttagcaagt ttataatttt gcgcttcctc ggagtttaga
     8581 atcatgctag caagctcatc tgataaatcg agtagcgcca tattttccat tgtagcgagc
     8641 aatctagcca cctccatata acttactttt ttattatacc atagaactat tatttaataa
     8701 taaaattttg cgtatagtat tttcgatatg ttcccgcacc catataggta tatgaaccat
     8761 ctagtagatt ttctctatgt cctttagagt tgagccaacc ttctactgct gctgcactat
     8821 cgacatagtt ataggcgata ttttcaccag ctttagtata tttgacgtcc cctttactaa
     8881 gtcgtttgct tagatctcct tgtgtcggtg aagtatggtc aaaataatca tttttcttca
     8941 tatcaacact atgtccatat gcaactttcg caacagactc gtcccaagct acttcttcta
     9001 ttccgtatcg atcacgaata acattagtga tttctagcac ttgtttacta gaagcatcat
     9061 caattgcatt ccaatctgct ggcgtcaact tttcttcata aatttcacct tggtaagata
     9121 attcataggg gcgcattttg acgaaggata atttattgag gtaacgaaca ctaatcagtt
     9181 ttgacttaaa tttatcgaaa ttcagttgcg cataaacgcc acttccaatg ttaacaatcg
     9241 gacgggcatt taagtcttcc tcagaaagtt cgaatttata atagctgtct ttatagttga
     9301 aggatatttc cgattgcaaa ttggcatcgg taaatacttt ttcggtggac ataccaatcg
     9361 tatatggcat gacatttaaa tcttgtccta gcgcataaat ggtttgcacg atattttttg
     9421 ttacacctac ttgcatatag cttgttcctg gttgactata aatgtaatta tcgtaaccgt
     9481 atgctgtttt gtctacacgc accgggtccc caaactcttt ctttaattca cttacgtttt
     9541 tattaataaa tcttgccaag ctggaactat cttgcacttg tttcggattt tcattcgttg
     9601 tttttttatt atcaggaaaa ttagactttg ttgccgtatc ttcggctgta tttttctcta
     9661 ctgatttact aaaaaaaaga tctgtgttgt atccaatgaa caggcaaatg attaatagca
     9721 cagctactcg cattataaac ttcacatttt gccctcctcg gcagtatttt gttttcttga
     9781 tgtaactttc attttaccaa tactattatc atttgaaaag ctttaaaaat cataaaaaaa
     9841 acaattacaa ggaaacgcgt attgcacgct tcttcgtaat tgttttttat ttttataaga
     9901 aaatcgaaat aactaccatt gctacgaata aaattgtcat gtaatttaat gagtaaacga
     9961 acatccattt agcccattta atactatctt ccattttaaa gccgtaaata ctaagtgcta
    10021 accaaccgat attcagtaac gttgctaaaa caacataaac gatgcctagt tcaaacataa
    10081 agaacggtag gatagttaat aaaatcaccc agaaaaacat gcttttcttt gtacgttcaa
    10141 tgccttttac tactggtaac attggaattc cagcagctgc gtattcctct ttccgtttaa
    10201 tcgcaatcgc ataaaaatgc ggcggttgcc aacaaaacat tacgagaaac agcatgattg
    10261 gtacgatgct aaatgatggt tcgactgcaa accaaccaat cagcggcggg acagcgcctg
    10321 aaaaactacc aattacagta ttactaacta gttttctttt tgcatatagc gaataaacga
    10381 ctacatacaa aaagaccccg ataacgccaa gaactcctgc ttgccaagtt gtcataaata
    10441 acataattgt accgacaaca cctagcacaa gcgcaaccat tagtgcacgc ttaccagaaa
    10501 ttttcccggt cattgttggt ctgttttttg ttctttccat aattccgtca atatcacggt
    10561 cgatgacatt gttaaaagcg cccgaagcag ctacgataag tgctgaaccg acgatagtaa
    10621 aaaatatcac gtctacattt tgaataaaag aaattccatt taactgaaag gctaaccaca
    10681 ttcctgtaaa agcagtaatc gtattggaat tcacgatacc aattttcaca agctcggtaa
    10741 aatcacggac agtaaatcta ctcgccgata actccccagt cttttctatc tgattcactt
    10801 tttctccccc taacacttgc tgatataaac cagtgattgc gaactgatag atatcttata
    10861 cccttattat gtgaaaaata cgcccctttt gtcaataaat cggctttagt cttgtacgct
    10921 ttacttcttc aaataaacac gctacaatta gtttgatgtg tactcatgaa cttatacata
    10981 gacacaaatt ttagtaaaat ctcacacgca tctaaaggag agattggtag ataatgaaaa
    11041 aattcttgaa agtttggtcc gtactaacga ttatttgtat gacggtcgtt gtgtttggcg
    11101 gagcgctcgt aacgaaaact ggttcagctg atggctgcgg taatagttgg cctctatgta
    11161 atgggcagtt agttcgttta acagatgtta ctccggaaaa attaattgaa ttcatgcacc
    11221 gaatgacgac gggaatcagt tcgatttttg ttattgtttt agcaatttgt gcttggattt
    11281 atatgaaaaa tcgtcgcgaa acaaaaccac ttgcgattat tgcggttctg tttctaatta
    11341 ttcaagcgtt aatgggaatg gcggctgttg tttggggaca aaatccgtat atcatggcgc
    11401 tacactttgg aatttcgatc atttgttatg cttcgattgt attgcttgcc ttgatgattt
    11461 ttgaggtaga ccggaaattc gatgccagaa acctcgtgat ggggacgaaa ttacgtatta
    11521 atatttatgc actaacgatt tacacgtact tagccgttta tactggtgca cttgtacgcc
    11581 acgaaaaagc aagtatggcc gttccggttt ggccttttga aaatgggcac tttattatgc
    11641 ctacttcagt acaagattat gtgcagtatt tccaccggtt agccgcattt attttaattg
    11701 tttggttgct gtatgtaact tggcttgtgt tccgggatta cagaagatac cgcgtgctta
    11761 cttttagcat ggtgttgtcg cttgtgttta ttgcacttca agccgttact ggggcgctgt
    11821 ctgtttatac aggagtgaac ttgtatatcg cgcttgccca tagcttgatt attacgatgt
    11881 tgttcgcgct actttgctac ttatgcttac tggcatcaag aagtaaaagc aatcgactac
    11941 gaataaaata acgaacacgg ctggcaactt tttgttgtca gcttttttat ttgtttacgg
    12001 cttttgcgtc gttttatgct aaaataagtg agagtataag tcaaacgagg tggataactt
    12061 ggataaaaca aagagaaaaa tgatttatga gacttttatg cttattctca tagtgctttc
    12121 ccttgcccta ttaccgtaca gaaacagctt tacatttatt ttaaattgga ttatttgggt
    12181 gatttttacg ctagattatc tggttcgact ttatcgtgct gataataaat ggcattatgt
    12241 aaaaacgcat ccgtttcaac tcattgcaat cattccattt tacggtggat ttagagcggc
    12301 tcggattgtt agttttgtcc atctattaag tattactgcg atggggagac ggtatattgt
    12361 accgatttat agctttttcc gttctaatgg tttaaatcga tttttaatga tttttgtgtt
    12421 acttgtgatt ataattcctg ttccgatggt atttatcgaa cctgaaataa acaattatcc
    12481 tgatgcgctt tggtgggcga ttgtgactgc gacaacagtt gggtacggtg atatcgttcc
    12541 agtgactccg attgggcgga ttttggcatc gattatgatg ttgtttggga tagcgtttat
    12601 cgggatgata actagtacga taacgaactt tttccgcgct aagaaagcta ctacttctag
    12661 cacacaaaga gcaagcaaga ttacccaatt aattgcagat acgccagatt taaccaaaga
    12721 agaaattgcg gtcgtagagc aatttttggc actacgaaaa aaagaactgg ctgatgaaaa
    12781 tataaaaagt gatagcgaat gatgctatca cttttttatt tgtttttcga cttggttacg
    12841 gtaacgttca gataaggctt ctaccgccaa aatgcgttct aagtcttctt ttgtcccatt
    12901 tttatgcaaa actttatcgt ggcaaaaggc tactgttacg ccgtgtgatt cttggtgaat
    12961 ttgtttgatc tcatccgttg catgtataat gccaggagta atcgttcggc ataggtatcc
    13021 agtaagtcca gttttgtgaa ttgctttata gagattgggg attccattga acttttcaat
    13081 tgtactacat ggatttcggg cttccgttat ttggataacg gtttcgccaa tctggaattt
    13141 atcgccaatt tgaacagaac tttccaacat attcgtagtg atgagatttt caccaaaagc
    13201 agttacttgt agctcttcgc caaacattgc tgcccatttc gcgtaatgtt cgtatggata
    13261 aatacaaacc gtacgatccg gaccaccgtg atacttcaaa ttatgcggtg cgtcattttc
    13321 aaaaccggta gtggttagac tggcggattg tacaagcttt ttttcgattc ccgtcatcat
    13381 ccgtttgtta tttgaaaggt taagttcttt cggcttacct acagctaaat gcatgatttt
    13441 ccgttccatc tgcttactcc tttgaagtta tttttttcgg cttaaaatag caagaatgcc
    13501 cgtgataagc gcaataacgc tgatagctac tgcggtccat aataaaatcg tgttatctcc
    13561 agtactgctt gtatcccctg ctgtgttctc cgctcccgca actacttctc cgtgcgagcc
    13621 agttgcggat ttggaagact ctttgacaat ttttgtggta gcatgtggtg tctcggaatc
    13681 ttctgcgcca acccattcaa cgatggagcc atcttcataa tattgatagg cattccaagc
    13741 aatttcgcct tcttcacttg gatttttagc gataaaacta aagcgctgga attggccttt
    13801 ttcaattccg ttgccttctg tttgccatgt tactgtgcca tttttcttat ctactgtcgt
    13861 tgtccagcct ggcactggtt cataagattc gaaagatacg cctttttcta cttttaaaac
    13921 gattttttta gaggcgacat ctttttctga cggtactttc attgtgtagg tttcccagga
    13981 gtctacggtc gattcgctcg gtaatacaga aacatgtgcg ctcgcttgaa acggaatgat
    14041 aaagacagct aataaaacga cgatggagct gataattttt ttcattattt ttccccttta
    14101 ctgtgtaata ttggttgtaa atgtttgatt tatatctgtg aaatcttttg ttaaaccatg
    14161 aaccgtaatt tcccacttgc cggtttgatt aatatatagc ccttccgcaa agtattgcgt
    14221 atcatttgca agtttggctt ggaaagttga tttttcatct gttttagtag attttgttgt
    14281 aatcgtcact tgttcaaaat ctgttttggc agaaccatct gctgaagtaa aagtgatgat
    14341 aaactggttt tgtccaacgg tcgctggttc cactcgtaaa ttgatttttg ctttttcgcc
    14401 ttctgctgca attgtttcat caaatgcttt cggagcaggc ggtggcggtg tttgtacgtt
    14461 ggttaacaca cttgcgacaa caaggataat cgtcccaatg ataagttcca tcaaaatggt
    14521 tttaaatggc aatcgttggt ttttgagttt gatataaatg taatgaccta gccctagtag
    14581 tgccattagt aaaaataaac caattttgaa aagaagtatt ttaccgtaat tggttgtaaa
    14641 taaattggcc atttgaccga ggttcatcac tgccattaat aggccgctga ctaagatgga
    14701 ggcgactgca atgattgcta caatcgcaaa gcggctccaa actgcgcgcg ctttcccagt
    14761 ctgaggtaat acgaataaaa gcactaaaat cccgccaacc caaacgcttg cagcaatcat
    14821 atggagcata tcagcgctga tacttactat tttatcggca ctggcagcgg cgtgtccatt
    14881 ctgagccttc gcaaaaatca aatatccgat taatgcactc tcggtcaaaa gcgcgaacca
    14941 gctccattgt ttctttttaa agaacatcat gatagtaaaa atggcaagta gaagccatac
    15001 gataagttca ctgatccaaa tataacctgt tttcgtagtc aagaacgcaa ctaacttact
    15061 tggtccaaaa ctttcactga tagaaacgcc cgttgtgata cttgtttgta tgaaaagttg
    15121 catgaagaga gccacaccta gaagtgctag cgctacccaa gttacttttt tcaaacgtcc
    15181 agaaattttt tctgttaact gttcttttcg tggataaagt cctaacccaa aaagaagtac
    15241 gccgataaac agcgaaaaac ctatgtataa aacggctttt tgaatcgaac taatttgcaa
    15301 gtccgctcca cttgagggaa cttccgctgc ttggaacgtc gctttcgtat cccctaactt
    15361 aaaagaaatg atccccgtaa ccgcatgtcc atccgctgac acaacccgcc atgaaacaga
    15421 atagacatcg gcttttaaat cagccggtag agatgcttca accatatgat tattcttttt
    15481 agaaacagtg gttttcccgg tttccacttg tttcccactg gaatctttga cttctattaa
    15541 agggaaatcc gcttcaattt cttcattaaa aacaagcgtt actttttcgg gtgcggtttg
    15601 aatatgagat tgatcggccg gattcgaatt ttccaaataa gcatgtgcag aaacatgctg
    15661 aactggcacg attaatagat atagtataat gagaaaaaaa ctgacccttt tcaataattt
    15721 catttgctac tcctttttcg aacgaacggt tttactcttt ttaacttatc atgtgcaaca
    15781 attgaatgga aataatcggc tcatttccta ttgcaaatga tgctacgatt atggcatagt
    15841 gatagaaaag gaggttttac ctatgcttcg ttatatcgaa ttgtttttca tgtttgcttt
    15901 tgttacactc atcacgatgt ggattcaagc acttctagca aaatggaaac ctactattct
    15961 tcgttctttc tggcttcgta cgctcacatt tattattatt ggctacgcat taatggcgcc
    16021 aacgctatac ataggcagtt tattgctaaa ataagttcag ttgctttcac atcgcagtta
    16081 gattgtttat actgggaagt gggaggtgaa ttttcatgaa aaaaatgtta gtagaattta
    16141 gagacttcgc gttaaaaggg aatgttctag accttgctgt agcggtagtt atcggggctg
    16201 ctttcggtaa aattgtttca tctttagtag ataacatcat tatgccactt gtcggtgtac
    16261 tacttggtgg tcttgatttt acagatttaa gtttcaaagt tggtaaatcc gttattcagt
    16321 acggtgcttt catccagtcc atcgttgact ttgtcatcat cgcttttgcc atttttattt
    16381 tcgtcaaggt acttactagt tttattaaga aaaaagagca aacggtggaa gaaacgccag
    16441 tacctccaac tgaggaatac ttaaaagaaa ttcgtgattt attgaaagaa caacagaaat
    16501 aactgaaaaa atccttcttt tgtggaagga ttttttattt acattcgcgc ttataaatta
    16561 tgttttctaa agctaaaaag ttaggctatc tatctccctt aaattcagga aaaaaatagc
    16621 ctaactaaat tctatttcac cgttgctgtt tttttaattg tatcgctaaa aacatttcta
    16681 ctgctgcgac aactaaaaag ataatttgta aaataaatac atagccgata atcagtaact
    16741 gtacaatcat ccaaactgcg agcacggccg ctgctgcgaa catgacttct ttcgttcgtg
    16801 gtaatttttt cagcaaataa atgagtgctg ctaaatggaa taatccaaca aatacgaata
    16861 aaaatatgcc tggtactaaa taatccacga acggtgaacc atcaagtaat ccagttgaaa
    16921 gagatagtaa accaccactt ggcatgaaaa ccatggataa tccaccataa attgctccta
    16981 ttgctgtaaa accaactatt acaatactac ttatacgtgt ccagttcatg gcgttctcct
    17041 agtcgttttt ctagtagtat accacgaaaa ctttcattct gccgtttttc ttcgttttat
    17101 ttttttgatt aaatcgatca atacgaaaac cgcaataccg catgcgacaa ctgtagtgag
    17161 ataccaagct ggaccggatt ctgcgcgtac tcctagccaa taagtcactg ttttcgggtt
    17221 aaaaaatgca aagcaaattg cacaaaatgc aataattcga ccaataatgg aattttctct
    17281 catagcaagt gcatctcctt ttcttttatt ataacaagga ataagaaatg ataacttagc
    17341 ttttcggtcc caaagttgtt tttcatctga caagttttgg tttttttaca caaaaaaact
    17401 acgacaagag aatttcttgt catagcctca cagttattta ttaacaatgt ttagttgttg
    17461 ctcattaacg agtggataaa tagctagttc tttgctctct aaatcctctt ggtgcatatc
    17521 cacaccagta atttgactgt ttccgtatgt tctataataa taaattcctt tatcgatatt
    17581 gcaacatgag gaataaatgg tgtgctcgta tttttcccca ccaacatcac acagaccttt
    17641 ttgttgttcc accgagccta aaatatggaa aaattggcca atgctttctg attcagaatc
    17701 acctgaaaca gaattcaatt tggtaaaagt tgctttcaca aaacgagaca tagaagataa
    17761 atcgccaggt aagccgattc cgcccatccc acgactataa gcatccaaat caatctcgtt
    17821 ggaaaaatta ttttctggag tttcactcga aagaacgcga taattgttta aattaaatag
    17881 ttggtaatca aatgttggat tatttgttaa cacgccaaca ggattatcat aaatgtgaag
    17941 tccatctttc acacattcca ctacaataga ttcgttttga tcagccatca accaatgtaa
    18001 aggagatagc ggcaaatttt cactaaagct aatattcacg agattgattc tctgaagtaa
    18061 tcttcttgct tcttttacag tagcgcattg accaagaatc cacggaataa attcaaatgg
    18121 cgttacattg tccttacctt ctgcaaaatc cttgtaatcc gcatttcctg agaaattgag
    18181 tcctgccata ctaaggcctt tttcattggt agcatcgtaa tacaacgggt agttttccat
    18241 cacagcagca ataccaataa gtgcataatg cttctctata tcctctacct tgcgaaaatg
    18301 gaacgggtaa tttttcggcg taacaaccac aacctctttg taagaaagtt cataatcgaa
    18361 attccttcca aaatagtgat ccttcgttgt ataagttatt gacgtacaca ttaaaaatcc
    18421 ctcctcaaat ttttcaccat acatgtatac cagtaccctc ggacttttgt gtaaaacata
    18481 atttgtggtt tttttcacaa aaaatggcca atttattacc tcatacaaga tgatttggct
    18541 ctgataaaaa ttttttaaag tatactcctc tattaacttc ttgaaaatat tctgctataa
    18601 aatcataata aaaaagatcc ctggaaaatc cagagatctt ttaaaaatgt cagctgatgt
    18661 taaccttaca tcatgccgcc catgccaccc attcccatat caggaacagc tgctgggccg
    18721 ttttcgtctg gtttgtctgc tacgactgct tctgtagtta atagaagtgc agcaacagat
    18781 gatgcgtttt gaagtgcgga acgtgttact tttgttggat ccacaatacc agcgtcaatc
    18841 atgtttaccc attcgccatt agctgcgttg aaaccaacgc caactgcttc gtgtttcaag
    18901 cgttcaacga taaccgaacc ttcaagtcca gcgttatgcg cgatttggcg aactggttct
    18961 tctagggaac gaagcacgat gttgatacca gtttctacgt caccttctgc ttctagtgct
    19021 gctactttat tgtaaatact tacaagagca gtaccaccac cagctacgat accttcttct
    19081 acagctgcgc gagtagagtt aagcgcatct tcaatacgta atttacgttc ttttagctct
    19141 gtttcagttg cagcgccgac tttgacaaca gctaccccac ctgcaagttt tgccaaacgt
    19201 tcttgtaatt tttctctatc aaattcagaa gtagtttctt ccatttgcgc acggatttgg
    19261 tttacgcgag cgctaatttg tgtggaatcg cctgctcctt ctacgattgt tgtatcatct
    19321 tttgttacaa ctactttgtt cgctgttcca agttgatcaa ctgttgctgt ttttagttct
    19381 aagcctaggt cttctgtgat gacttgtccg cctgttaaaa tagcaatatc ttctagcatt
    19441 gctttacgac gatcaccaaa accaggagct ttcacggcta ctacgttgaa tgttccgcga
    19501 agtttgttta gtacaagagt tgcttgagct tccccttcaa catcttccgc aatgattaac
    19561 attggacgac cttgttgaac aacttgttct aaaactggta agatttcttg gatgttgttg
    19621 atttttttgt ctgtaattaa aatatatggt ttttcaagaa ctgcttccat tttgtcggaa
    19681 tcagttacca tgtatgggct agtgtagcca cggtcaaatt gcataccttc tactacatct
    19741 aattctgttg caaagccttt ggattcttca atagtgataa cgccgtcgtt accaacacgt
    19801 tccattgctt ctgcgattaa tttaccaact tcttcatcac cagaagaaat agcagcaact
    19861 tgagcgatag actctttgct ttcaattggt ttagagatag cttttaattc ttcgatagct
    19921 gttgctacgg ctttttcgat accgcggcga acgcctactg gatttgctcc agctgttacg
    19981 tttttcaagc cttcttgaat cattgcttgc gctaaaacgg tagctgttgt agttccgtcc
    20041 ccagcaacat cattggtttt agaagcaact tcagatacaa gttttgctcc catattttca
    20101 aatgggtctt ctaattcgat ttcttttgca atcgttaccc catcatttgt aattaacgga
    20161 gaaccgaatt ttttttctaa aacaacatta cgaccttttg ggccaagtgt tacttttact
    20221 gcgtttgcta attggtcgac accacgtaac atggcacgac gagcatcttc actaaattta
    20281 atatcttttg ccattttata tttccctccg attatttctt tttttaatta tttagtaatt
    20341 gctaaaatgt cactttcacg taaaatcaga tagtcagttc cttcatacgt cacttctgtt
    20401 ccagagtatt ttgcgaagat aaccgtgtca ccttctgcaa cttcaagtgg ttcttttgtg
    20461 ccgttatcta gcacacgacc tgaaccgact gcaacaattt tccctgattg cggtttttct
    20521 ttggcagagt ctggtaatac aatcccactc gctgtttttt cctctgcttc aagtacttca
    20581 attacaacac gatctcctaa tggttttaac aatgtaaatg acctcctctg atataattac
    20641 ttttttcatt ttagcactcg acacattaga gtgctaatac agttattatg ataccaaact
    20701 gaataaaaaa tgcaagcaaa aacgtttaaa aaaatagaag aattcttatt tgcggtaaag
    20761 cttcataacg agtacaataa gaagagctat ttccgcttat ttgaagcaat ttagccaatg
    20821 ttttttatag aaaggatgcg taatttttgg ctaagcgtta tattacgatt gttttagttt
    20881 atttattatt actattttct gcatctgttg gaattccgat tgttcaacat attttactaa
    20941 gtacaacatc actttcagca gagagcgccg catcttatgg aatggttatt tggtcgatat
    21001 tctctaatct tttatcactt gcaattatta ttccgatgct ttacagaaag ccaaaagaaa
    21061 ataaaatcga aattggtgaa aaaacaaagc cgcttctaag tattgtgtgg attgtcggag
    21121 gagtcattgg cttatatgtg gcacaaatta tttgtagtgt tattattacg atgatttcag
    21181 gggagttaag taattctgcc aatacggagt tacttgttga tttgactaaa gctgcaccta
    21241 ttttcttgat ctttatttct attttgggac cgattttgga agaacttgtc tttcgaaaag
    21301 tgttttttgg tgggctaagt aatgtgacga atattcatgt ggccgcagtt attagttcgc
    21361 ttttctttgg attacttcac ggagatattt ctttcttact tacttatttt gtcatcggac
    21421 taattctttg tttcctttat acgaaaacaa aacggattgt tgtttcgatg ggtgcccata
    21481 ttttaatgaa tacgattgtt ttgcttttga gtcttggaat tattggggga taatatgaaa
    21541 aattcattaa taaagcaaag ttttttatat tttgcacttg gtcttgtatt tgtatatttt
    21601 gttgttgttc gtgtggctga ttatggttat gatgtgcttg catgtatact aattatcatg
    21661 acattaatgg attttggtat tggcatcggt ctgattatca ctggacttaa aagacgtaaa
    21721 aaaaacctgt agaaagtaag tgttgcttac cttctacagg tttttttatt ctgttttcgc
    21781 tggataattt tccaggaaat agattaacgt ttgtaattcc gttgtaagat cgatatggtg
    21841 cacacgaact tgtttcggaa cactgatacg agctggtgta aagtttagaa taccttttac
    21901 atctgcttca attaaacgat caaccgttac ttgcgcttcg tcagctggaa ctgtcagaat
    21961 aactacttcc acaccgtttt cacgaacaat ttcttccata tcattcaaat gatagattgg
    22021 aatatcttgt tgaacactac ctactttcgc tggatctaca tcaaatgcag caacgatttt
    22081 gatattatta tttttcatga aattataatg taataatgct gtacctaggt tacctacacc
    22141 gattagtgca acatttgtct gtttgtcctg gctaagtgtt ttgctgaaaa agtcgagtat
    22201 gtaagaaacg ttatacccgt atcctttctt acctaatgcg ccaaagtacg aaaaatcacg
    22261 tcgaatagtc gctgaatcaa ctttcaccgc ttcacttaat tccgcagatg atactcgttc
    22321 cttacctgac tcatctaagt atttcaagta acgatgatat aatggtaagc gttttgctgt
    22381 cgcttgtgga attttagttg tttcctccat catgccttct gtcccttctt cttttaattt
    22441 tttctgaagt tgaagctatt gtgaactgta cttcctttca catgcttgct tatatactat
    22501 aaacatttca caaggaatgc acaaactttt tgctcatatc tttcaagtaa ggttttgtcc
    22561 cgcaaaatat ccggtgcagt cctcttttta tattctacgc taaaatcaca aataatgcga
    22621 gtgttttcac aatctttttt attcaagctg tcttggctat ctcattgcga ttacttagct
    22681 tttaagataa actagtaggg agaacgttcg aggagagaga ttatgatatt attacaagtt
    22741 cagcaaattt ctaaattctt cggtgcagaa gttattttag ataatattaa attagaagtt
    22801 aaaacaggtg accgaatcgc tctagttggg cgaaatggtg caggaaaatc cactttactt
    22861 aaaattatcg ccggcaaaat gagttatgat ggcggaacta tttccaaacc aaaaagtgtg
    22921 gaaattggct atttggctca aaataccggg ctagaatctt ctaaaaccat ttgggatgaa
    22981 atgcttagtg tattcgattc actgcgcaaa atggaagctg atttgcgcaa aatggagctt
    23041 cgtctcggtg aaccggaact ctataatgat ccagaaaaat accaagcact gatgacggat
    23101 tatgatacgt tacaacatac ttttaaagaa agtggcggct atacttacga agcagaaatc
    23161 cgttctgttt taaatggatt gcgtttttat ccagaagatt atgaagtaga aatcgcttct
    23221 ctaagtggtg gccaaaaaac gcggcttgct ttagccaaat tactgcttgc taaacaagat
    23281 attcttgttc ttgatgagcc caccaaccat ttagatatcg aaacactagc gtggctcgag
    23341 acctatttac aaaattatca tggttcgtta ctcatcgtat cccatgaccg ctacttcctt
    23401 gataaagtcg tgaatcaagt atacgaaatc agccgaacca aaattgatca ctacaaagga
    23461 aattacagtt cattcgttaa tcaaaaacaa gcgaaactag aacaaatgtg gaaagagttc
    23521 gataaacaac aaaaacagat tgccaaacta gaagattttg ttgctagaaa tattgtccgc
    23581 gcatcgacaa caaaacgagc tcagagtaga agaaaacaat tagaaaaaat ggatgtgctt
    23641 ggtcgcccgc aaggtgatga aaaagcagcg cattttggtt tccaatttga aaaacaaaca
    23701 ggtaaagatg ttttaatggt agatcagcta agcattggtt acgcaaaaga taagcgcatt
    23761 gcttccaacc taacgttcga aatgaaacgc caagatagtc tcgcgctcgt tggtccaaac
    23821 ggaatcggca aatcaactct acttaaaacg cttattcgtg atatcccagc tttaagtggc
    23881 gaattccact tcggtgctgg cgtgaaaatt ggctactacg atcaagaaca agccaaactg
    23941 acatccaaca aaactgtttt aatggagcta tgggatgatt atccagagtt gaatgaagta
    24001 aacgttcgta caacacttgg taatttcctt ttttcagatg atgatgtatt aaaaaatgtc
    24061 cagtctttaa gtggtggcga aaaagcgcga cttgcccttg ctaagctcac tttacttgaa
    24121 gccaatgtcc ttattctcga tgaaccgacc aaccatttag atattgaaag taaagaagtt
    24181 ttagaagcag ctttaattga ttttgaaggc acgattctct tcgtttccca tgaccgctat
    24241 tttattaacc gaattgcttc taaaatcgtc gaactagcgc ccgaaaaagc gaccgttttc
    24301 ctaggagatt acgattatta tcaagaaaaa ttagcagaag aaaaagaact ggcacgactt
    24361 gatgccgagg atcgacgcaa aaaaggcgaa caagtggaag cgacctcctc tgttcgaaaa
    24421 ttaaactatc aagaagaaaa agaacaacaa aaacttcttc gccaaagaaa acgcaaacta
    24481 gaagaagtag aaaaatccat ggaagcaacg gacaaaaaga ttgccgagct tgaacttcaa
    24541 ttaacgaacc cagaagtttt ccaagaccat gaaaaagccc ttgaaatcac tcaagagcta
    24601 gacgccgtaa aagctgacgg agagaaatta atggaagaat gggaacaaat aagcgaagaa
    24661 ctggaatcca tgtaatctgc ataaaaaaag gagcaaacaa tgaaaaagat tttaattatt
    24721 tctagttcga ttatcgttgg tttacttgtc attattacta tttgcgcaag tttttacttg
    24781 tatagttatg ctttagctcg tgacaattcc agtatgaatg acactgcaac aacagacgaa
    24841 accactgcca cagccaaact agcaaagaaa aaccgggaag aaaatgtggc ttggatggaa
    24901 aagcaaaatc tcacgcaatg gacagaaacc tcagcagacg atttgaaact tgttgctact
    24961 tatttagcag cagataaacc atctaacaca accatcattt tagcccacgg ttatcgcggt
    25021 aaaagcggta aagtagaaat ggcaggtctt gctcgaatgt atcatgaaaa atttggttac
    25081 aacgttttaa tgcctgatgc tagagcgcac ggcaaaagcg aaggtgaaaa tattggattt
    25141 ggttggcctg aacgcaaaga ttatgtgcag tggattgacc aagtaatcga caaaaatggt
    25201 acggacactc aaatcgcact acatggcgtg tccatgggta gctccactgt ccttatgaca
    25261 agcggcgaaa aactaccaaa acaagtaaaa agtattatcg ctgattgcgg ctatacatcg
    25321 atggacgccg aactttcgta tcaactaaaa gccatgttcc acttaccgaa attcccaata
    25381 atcccaacag ctagtctgat taataaattc aaagaaggtt tctttttcag cgaagcaagt
    25441 gcggttgatg cggtcgctaa aacagacgta cccatttttt acatccacgg tgatgctgat
    25501 gctttcgtcc ctacaaatat ggtagacgaa ctctataaag ctaccaatag ctataaagaa
    25561 aaatggattg tcaaaggagc agaacacggt caagcattca cggtagatcc aaagacatac
    25621 gaagaaaaag tacgccaatt tttaaataaa acgatgtaaa aagcagttat cctctaggaa
    25681 ctagatacta tctgttagga aggaaaaaat tggcaagtaa taagtaaatg tgttattata
    25741 taaatgaaaa gagagccatg cgacaacatg actctctcgc aaacaccatt taagatggtg
    25801 acagcctttt atatgattta tttaaaaacc actagctgtc aggcttatga gtggttttta
    25861 ttttttgtca tttttgctgt tcatgattgt tacgactaag actgcaaaag caatcatcag
    25921 cgtaagactc tcgaaaacag tcacacgttt atcctttcca ggtaacgcct aaaaaacaac
    25981 ataaacacca cctactttct ggatgaaaaa ggctggtgca ccaccataaa cttatttgca
    26041 tcacaattat agcatgcaag tatctttaga aaaagagttg gcgcgaaagt tgtattttag
    26101 aggcataacc agaaaattga gctaataaaa atagactgca gcgaaagtaa tagttcactt
    26161 tcactgcagt ccgaagcgtg cggaacgaaa aatcgcgcgc tttttatata tcttccagca
    26221 ataatcccgg attcgcattc atatcaaaac cactacgttt tccttgtaag aaactcacag
    26281 tccctgcagc agcaatcatt gccgcattgt ctccgcataa ggctaatggt ggaataatca
    26341 gttctgtctc tggaagctct agttttactt cttgaataag gcgttctcgt aaaccttggt
    26401 tcgctgccac gcctcccgca agaagcagtt gtttcacatc gtattgttta gcagcacgaa
    26461 tcgttttgct tactaaaaca tccacaacgc ttgcttgaaa actcgccgcc atatcgtttg
    26521 gatttggctc ctcaccacgc tgccttaaat tatgaagcgt gttaataaag gaagacttca
    26581 atccactaaa actaaaatca aacgaaccct catccatcat cgctcttggg aaatgaaacg
    26641 tatcttcgcc gtctttggca agtttatcaa tttgcacgcc gcctgggtat gcgagaccaa
    26701 gtgtacgtgc cactttatca taagcttcac cagctgcatc gtcccttgtc tccccgataa
    26761 tttcaaactc attatctgct ttcattaaaa ctagttcagt atgaccgccg ctgacaacta
    26821 atgaaagtag cggaaatttg aattcagttt caaaacaatt tgcataaata tggccagcaa
    26881 tatgatgcac gccaactaaa ggtaaattgt gcataaaagc gagcgtttta gccgcattca
    26941 caccgataag cagcgcacca actagacctg gaccttctgt cacagctatc ccgtctaaat
    27001 catccatcgt cacatttgct tgttttaaag cttcttcaat cacaagcgta atttgctcca
    27061 catgatgtct tgatgcgatt tcaggaacta ccccgccaaa tcgtttatgg ctctcaattt
    27121 gagaagccac cacactcgat ataatttcat tgccattttt tacaacagaa gcagctgttt
    27181 catcgcagct agattctatt ccaagaatta atgtattttt tttcataagt ccacccacat
    27241 cactagcgcg tcttctttcg tatccggata atagtttttc cgaatggcgc cgtcttgaaa
    27301 tcctaatttc ttataaagcc cttgtgctac atcgttggat acgcgaactt ctaacgtcat
    27361 ccgaacaact ccacgctctt tcgcaactcg aatcatttct cgcaaaagcg cctcaccata
    27421 atgattccct tgataatctg gatgaatcgc aatattcgta atatgtcctt catctaaaac
    27481 gagccaaaca cccgcataac ctactacttg ttccttatat atcgcaagta aataataggc
    27541 gtattggtta ataataaatt cattccgaaa agctgcttcc gtccaaggta ccgtgaatgc
    27601 tgcattttcg acattcataa tacttttcaa gtcagtcacg gttgcttccc gaaataataa
    27661 ggcttcatcc aaactcactc ggaacccctc gattccaacc atttgctctc cgcttctgcc
    27721 agttttaaat aatcaggaac aaagttgtct gccggttctc cgtctaaatt ctctgccagt
    27781 tttacaagag aactagctcg tgagtaagta taatctgcct gcgcaaaaac cgcccgctca
    27841 ccgaggactt ccgtcacagt cacacaaatt tgttctgtta aggttccgac aaataaaatg
    27901 ggctcctcgc tagacaggaa ttgttctagt aattcagtta acgcaatatg tccgtccgcg
    27961 ataacactct gcatttcacc ttcgcttgct tgataaacgc ccgcatatac attactacgg
    28021 cgcgcatcca tcaacgcgac cacttttcca ggaaagtaca aaccattctc tgctaaaagt
    28081 gccaaagagg aaatcccgac aatcggaatc cctgcatccc aagccattgt tttcgcaact
    28141 gttacaccaa tacgaagccc ggtataagac cctggacctt ttgctacagc aatcttttct
    28201 aagtcagtag gttttactcc acattcttcc atcaaaacag caatcgctgg aagcaaccgc
    28261 acactatgat tttttttcaa attcgttgta tattcgccga taacgacacc ttcattaaaa
    28321 agcgctatcg ccatcgtatc ggaagacgta tccatcccaa gtatcatttc ccaaaaacct
    28381 ccattgcaag ttgctcatat ctttctccaa ctggcttcac aaccaattta cgcgtattct
    28441 catctatatg aaaaagctga atttccaagt attcttctgg caaatcttcg cgaacaaact
    28501 gcgcccactc aaccacgctt acacctgctc cgtagaaata ctcctccaaa ccaagttcat
    28561 ccgccgaagc atcttccaaa cggtacacgt ccatatgata aagtggcaag cgtcctttct
    28621 tatattcacg aatgattgta aatgtcggac ttttaatcat ttgcggaatc aaaagacctt
    28681 caccgagacc tttggtaaaa gtagttttac ccgcgccgag atcaccttca agcaaaatca
    28741 catctccagc tgtcaattgt tcaccaagtt gttttgcgcg aagccttgtc tctctttcac
    28801 ttgtcattat caattcgaat tccattacct cacccgtcca tcattttctc tacatatcat
    28861 accacaaagc cgcgccaaaa taaaaatcaa aaaaacgcaa cgacctaagt cgctgcgtct
    28921 ttcgattgat taataattag ttccacttat atccattccg ccatacattt ttgctgttac
    28981 atctgtgatg attttattta gctcttcgct agaaataact tcatcttttg taggaaaatc
    29041 ttcaattgga acaaattctt ctgcttttgt tttcaccgta aagctaatag actcaggagc
    29101 gctcgcatca gatttatctt ctatttttgt ttgaagagta agtgtatcta agctgttctc
    29161 ttttcctgat tttacagtaa gtttattatt aattaagtac gttttatttt cttttaattc
    29221 tttcgcagca tctgttaaac tcgatttcat ttctgtatac gtggaatcaa aatctgctac
    29281 tgcatctgaa ccttggcttt ctgcaataac tttaagatct gcttttac
//
LOCUS       DASEAA010000017        29279 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.017, whole genome shotgun sequence.
ACCESSION   DASEAA010000017 DASEAA010000000
VERSION     DASEAA010000017.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 29279)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 29279)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..29279
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.017"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(63..824)
                     /locus_tag="U0342_000637"
     CDS             complement(63..824)
                     /locus_tag="U0342_000637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEM2421998.1"
                     /translation="MSKVIALANQKGGVGKTTSSVNLSSSLAFLGKKVLLVDIDPQGN
                     ASSGVGVNKGEIEHCIYDVLVDDVAIQDVLQKTDLDNLNVIPATIQLAGAEVELVPAI
                     SREIRLKKAIDSIRDDYDYVIIDCPPSLGLLTLNALTAADSVLIPVQCEYYALEGLSQ
                     LLNTIRIVQKHLNEDLQIEGVLLTMLDARTNLGIQVIEEVKKYFQNKVFNTIIPRNVR
                     LSEAPSHGKPILLYDAKSKGAEVYLELAKEVVAHG"
     gene            complement(1049..1807)
                     /locus_tag="U0342_000638"
     CDS             complement(1049..1807)
                     /locus_tag="U0342_000638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2421999.1"
                     /translation="MIHSTLSGITKRMAKIIFVKDEQNEFQAYDFLQNLIVEEPLMAT
                     LVFQGLLQLETAETRKLSTGKQILPDVHLIIGKSQAYSLQTTRVETTVDQPIQEMKAH
                     FKDKNCRLIYFTAFSGDETYYCFVKGYFKDKNPFTDQMSAYREEVKRVFLRRIEAETS
                     IGHADYQFETLKNKALANEGIAHYLDSFSASLGKYIFSKRMEKKWSQLDLALKSDLSP
                     VIIGRLEAGDPDLTLRMYQKVCTVLGVKTTFSVD"
     gene            complement(1966..2265)
                     /locus_tag="U0342_000639"
     CDS             complement(1966..2265)
                     /locus_tag="U0342_000639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422000.1"
                     /translation="MRFLKIIGHAVGVISCLMVLPSFVIAITSAILSFNPLYITYFFT
                     SPYARAVAVAEESGWGSGFNILLINYGAYLIAFGYTFFAIVKIYSWYQIAKEAKK"
     gene            complement(2277..3131)
                     /gene="noc"
                     /locus_tag="U0342_000640"
     CDS             complement(2277..3131)
                     /gene="noc"
                     /locus_tag="U0342_000640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid occlusion protein"
                     /protein_id="HEM2422001.1"
                     /translation="MPFSRLFGKKEKNQMDDIVEEGVQRVQELPMDKIFPNQFQPRTV
                     FDQDKIDELARTIRIHGVIQPIVVREMEPDYYEIIAGERRFRAVLSLEMEKIPAIIQN
                     LDDEEVAAIALIENLQREELTPIEEAKAYRSLLDMQDVTQEALAQRVGKSQSAIANKM
                     RLLKLPETVQEAVLNKQISERHARSLLALETEEQQVAILAEIAENHWNVKQTEARIQE
                     ILGVKKPVATKKTKPKRQAISRDVRIAMNTIKQSVTMVKDNGMDLDFTEEETDDFYQI
                     TIQIPKKK"
     gene            complement(3303..4109)
                     /locus_tag="U0342_000641"
     CDS             complement(3303..4109)
                     /locus_tag="U0342_000641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2422002.1"
                     /translation="MTILNEIQQNYNRLPNKEKQIAKYILEKSDELKNINIKELAEET
                     GTSISTITRFCRHVRCDSFVDLKMRVNTAATMVPSLGYDDLFEEVYSFYHKVIDNTVK
                     LIEPAKIREVVQYIQEAKRVYICGVGSSGLTAVEMSQRLIRMGLNVISVNDPHMMIIT
                     SSITTKEDFVIGISNSGNTPELVTALKIAKKNKSKVATFTSFENSEMTEISDVTIPVY
                     NTLFVSKRYFANSQFSIMYVMDIISMMLLQNESYRDNMEKTINTVTDEFH"
     gene            complement(4093..4998)
                     /locus_tag="U0342_000642"
     CDS             complement(4093..4998)
                     /locus_tag="U0342_000642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2422003.1"
                     /translation="MENYLCVDIGGTSIKYAKFNQEGKRVGDLKSCVTPITGGANQIM
                     PALIRIVEQEKTNVAGVCVASAGVVDSVKGKIIYAGYTIPKYTGTEIKAELEHRFHIP
                     CVVENDVNAACLGEFWLGGARGRGSVLCLTIGTGIGGAMLLNDKLINGSSFTACEVGY
                     MHLSQGRFQDVASTKALIKQVASRKNIEENALNGRQVMEWAYSGDADVLAEIEQWIEN
                     LVEGVVNLIYIFNPEVIVLGGGLMEEESFFKPRLKAAISTKLISPMFDTADITFAKLG
                     NEAGMIGALYHFLNQKEAEKDDDFK"
     gene            complement(5023..5469)
                     /locus_tag="U0342_000643"
     CDS             complement(5023..5469)
                     /locus_tag="U0342_000643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2422004.1"
                     /translation="MLLDRVTLEDIEVNLKAKDWREAIQTSARLLLERGAIKESYIDG
                     MIQSVENNGPYIVIAKHIALAHTRPEFGVIRGGLTFATLADGVAFGSDMFDPVKLVIT
                     LAATDSESHLEVLSELAEVLMDEEKVTRLIEANSSQAFYDELTKEG"
     gene            complement(5482..6138)
                     /locus_tag="U0342_000644"
     CDS             complement(5482..6138)
                     /locus_tag="U0342_000644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2422005.1"
                     /translation="MLKAIVMDFDGIVIDTEVVWYEIFKEWFKTKQNYDLSIEEFLQC
                     VGSNVDDLFRELNRTEQMDINRQDFEAETQATFIENSKSLPAKEGVESFIRELKERGL
                     KLALATSSQRPKPLYHLERLGLLGYFDAIITAEDVTRIKPEPDLFLEALRALDVKPSE
                     ALIVEDSRNGLLAGNSAGVNVLVIPNEVTKHSDLTPNYLERESLAEVDLTEIMAEYNK
                     "
     gene            complement(6201..7607)
                     /locus_tag="U0342_000645"
     CDS             complement(6201..7607)
                     /locus_tag="U0342_000645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannitol transporter subunit IICB"
                     /protein_id="HEM2422006.1"
                     /translation="MSIRVHVQKFGSKLSGMVIPNLGAFMAWGILTAIGVATGSEMLK
                     GFIAPMLNYLLPLLIAFAGGRAVHGYRGGVIGTVATMGAIISSDITMFIGAMIMGPLA
                     AWILKKFDERIDGKIPAGFELLVNNFSIGIIGAGLALFSYVAIAPMVEAVTKVLASGV
                     DVLINNHLLPLTALIIEPAKVLFLNNAIGQGILSPLATLQLAETGKSVLYLLESNPGP
                     GLGILLGYMFFGKGNSKASSYGASVIHLFGGIHEIYFPFVLMNPILILPLILGGMTGT
                     FILTMTNAGLVGVASPGSIITIMMMAAPGDHIKILIAVLCAALVTFITAIPFIKRMGN
                     KDSELQDAAKKMESLKGKKSSISSVFEATVDDFNFKNVKRIAYACDAGLGSSAMGATV
                     LQKKIKNAGLEDIKVFHIAIHELPTECDVVVTHKSLIDRAKEKQPDAYYVEITDYLGA
                     PEYQELIDKIVADREQKN"
     gene            complement(7641..8642)
                     /locus_tag="U0342_000646"
     CDS             complement(7641..8642)
                     /locus_tag="U0342_000646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2422007.1"
                     /translation="MTKQIKVGVIGVGQMGQYHAEIYQKLPQVELVAICEYNDERRAE
                     MAEKFQCKAYKDYHELLANTEIEAVSIVLPDNMHRDCVEEAVKYKKHILLEKPLAKEL
                     EDGKAMYELTKDYDKVFTVGFLLRFDPRFNMIKQRLDNGELGDIIHLYCRRNSPITGP
                     KRYIGASDLSMHVMIHDIDYINWYMDSEPVKVIAKSRSVLLKEYGMNDVIYAIVTYEN
                     GAIACLEACWVLPENSPTIIDDKLELVGTKGVAYVDSCDHGVRFVSEKGVSYPDSRHW
                     YYTNGEVSGDLAEEVMAFINNVANNTKSIITPKEAYDSLRVVDAIERSIAEGKEVSL"
     gene            complement(8662..9357)
                     /locus_tag="U0342_000647"
     CDS             complement(8662..9357)
                     /locus_tag="U0342_000647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmannosamine-6-phosphate 2-epimerase"
                     /protein_id="HEM2422008.1"
                     /translation="MGNSVMEKIKGGLVVSCQALEDEPLHSAFIMSKMALAAVQGGAV
                     GIRANTAKDIRAIQSEIDVPIIGIYKKDYDDSDVFITPTLEEVREICETGVEIVAMDA
                     TTRKRPHNEDLKDILSAIRKEFPNTLFMADTGSIEDVYYADSLGFDLIGTTLYGYTEE
                     TANKNISDDDFSHLKEVLKSTKRPVIAEGKIDSPSKARQVLTLGCYAVVVGGAVTRPQ
                     EITTRFTNEIKKI"
     gene            complement(9559..10275)
                     /gene="rsmG"
                     /locus_tag="U0342_000648"
     CDS             complement(9559..10275)
                     /gene="rsmG"
                     /locus_tag="U0342_000648"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (guanine(527)-N(7))-methyltransferase
                     RsmG"
                     /protein_id="HEM2422009.1"
                     /translation="MNPEQFQTALAEKGIELSDTQLKQFHDYFEMLVEWNEKMNLTAI
                     TDEKEVYLKHFYDSISAAVYVDFTKFDTICDVGAGAGFPSLPIKICFPHLKVSIVDSL
                     KKRMTFLDALAEKLGLTDVHFYHDRAETFGQNKAHREKYDLVTARAVARMSVLSELCM
                     PLVKKGGSFLVMKAAQAEQELQTAEKAIKLFGGKVEEHFSFFLPVEESERNIYVITKT
                     KETPNKYPRKPGTPNKLPIE"
     gene            complement(10428..10694)
                     /locus_tag="U0342_000649"
     CDS             complement(10428..10694)
                     /locus_tag="U0342_000649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422010.1"
                     /translation="MIDKLKAELLESRRNLEKNLIGMFVASQTHATSENRKRMFKMIK
                     RDKIADIKSNCQGYIDGLSTTAEGKWVNQAKKSFKENANKFDNC"
     gene            complement(10696..11061)
                     /locus_tag="U0342_000650"
     CDS             complement(10696..11061)
                     /locus_tag="U0342_000650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422011.1"
                     /translation="MDKQRQLLLKLENLDNDFNRKRRQLDEAMDDASQEKWRFHQELE
                     NLSEQIRYIHQKRDYEASEDLQKAYHLISSIQEEGDWKVKNTLTKLENEHEEHQALYK
                     KQVNSYEEELHQLKKDRDL"
     gene            complement(11054..12337)
                     /locus_tag="U0342_000651"
     CDS             complement(11054..12337)
                     /locus_tag="U0342_000651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2974 domain-containing protein"
                     /protein_id="HEM2422012.1"
                     /translation="MSLPNNDYERMRLARKEYDNLYLTEDVTISKVNGGTNTIGIVSQ
                     KINNKSTGEQSYIITDKYTPPIASISERNKVKELTILYKGSTAPANGNFNVPKHPDYK
                     DVRKDWLSNDIPTAIQITNGGGSTVTPQLKTSAETLKQTMKLYPNAQIYVYGHSLGSM
                     NAQYAIADLDKKDIKRISGGFFYQGPNIYSNLTPKQQDTVKAINALDRLFNFIDRKDY
                     VPIGYGIGDPTIGHLIEVESKKAGMVEQHMWGGYQFDKEGNILTNKEGSLQLAKYVTA
                     QQLAAINIMRTSFTKSGGGLSSSEEIFLDAAEALAITQGMKQTIQGEIRALKDVFDKE
                     IENAEELWRDTLSDARDIGSNLYESEILAALAWGGATEPEIVIDTVQDCEKSLVEATK
                     IEQEYDKLLERINEAIKSQLKTDQELAKQIGSMYG"
     gene            complement(12334..12726)
                     /locus_tag="U0342_000652"
     CDS             complement(12334..12726)
                     /locus_tag="U0342_000652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HEM2422013.1"
                     /translation="MKKRWIIILAITVITIFGLGVKFYMDEEKLNKEMIKVVYSDEAK
                     NAFYKGLKDLDTKALTKEGVIQSYEIDEKSINHNPMGGINVTVIINENPELYIKYTLD
                     KFNGKLECGSASIAGKLSKLLGRWKENS"
     gene            complement(12839..13230)
                     /locus_tag="U0342_000653"
                     /pseudo
     CDS             complement(12839..13230)
                     /locus_tag="U0342_000653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466328.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
     gene            complement(13255..13635)
                     /locus_tag="U0342_000654"
     CDS             complement(13255..13635)
                     /locus_tag="U0342_000654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466331.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1310 domain-containing protein"
                     /protein_id="HEM2422014.1"
                     /translation="MKKRWFIAMVVVVMIVAGLGVKFYMDEEKLNKEMINVVYSDEAK
                     RVFENGLKNLDAKALTGKGVINTYEIDKKSIKQNPMGGINVTLHVNGDSELYVFFTLN
                     KADDKKLIDDGGGNSAKLGKLLDN"
     gene            complement(13794..15683)
                     /gene="mnmG"
                     /locus_tag="U0342_000655"
     CDS             complement(13794..15683)
                     /gene="mnmG"
                     /locus_tag="U0342_000655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466332.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis enzyme MnmG"
                     /protein_id="HEM2422015.1"
                     /translation="MQTYDAGTFDVIVVGAGHAGVEAGLASGRMGAKTLMLTINLDMV
                     AFMPCNPSVGGPAKGVVVREIDALGGEMGRNTDKTYIQMRMLNTGKGPAVRALRAQAD
                     KWDYQHEMKHTIEKEENITLRQGLVDRLVIEDGVCKGVITNSGAIYYAKTVVITTGTF
                     SRGEIIVGELRYSSGPNNQQPSVKLSEHLEELGFELRRFKTGTPPRVKSSTIDYSKTE
                     EQPGDDHPRAFSFDTVEMLLDQLPCWLTYTNETTHEIIQANLHRSPMFTATKKGTGAR
                     YCPSIEDKIVRFSDKPRHQIFLEPEGKNTEEVYVQGLSTSLPEEVQREMLRTIPGLEN
                     VEMMRVGYAIEYDAVMPDQLWPSLETKLVEGLFTAGQINGTSGYEEAAGQGLMAGINA
                     ARKVFEKEPVILGRDQAYIGVLIDDLVTKGTEEPYRLLTSRAEYRLLLRHDNADLRLT
                     EIGHEIGLISDERYERFLAKQSAIEAEKERLQKTRIKPTAEVQAMLKEIGSGELKDGI
                     LAADLLRRPEITYDKIAQIVSRETFVTDEIAEQVEIQIKYEGYIQKSNLQVEKMKRME
                     DKKIPENIDYDAISGLATEALEKLKKIEPLSIAQASRISGVNPADISILLVYIEQGKI
                     AKISK"
     gene            complement(15708..17081)
                     /gene="mnmE"
                     /locus_tag="U0342_000656"
     CDS             complement(15708..17081)
                     /gene="mnmE"
                     /locus_tag="U0342_000656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA uridine-5-carboxymethylaminomethyl(34)
                     synthesis GTPase MnmE"
                     /protein_id="HEM2422016.1"
                     /translation="MEFDTIAAISTPPGEGAIAIIRLSGPEAIQIADRIFYAKNSLSE
                     AESHTIHYGHIKEDGEVIEEVMVTVMRAPRTFTREDVVEINAHGGIVSVNRVLQLLLR
                     NGANLAEPGEFTKRAFLNGRIDLSQAEAVMDLIRAKTDRAMGVAIRQMDGNLSRLIRN
                     LRQEILDALAQVEVNIDYPEYDDVEEMTQRMLLEKTELVRASVEQLLQTASQGKILRE
                     GLATAIIGRPNVGKSSLLNQLIQEEKAIVTDIAGTTRDIIEEYVNVRGVPLRLIDTAG
                     IRETEDIVEKIGVERSRKALADADFILLVLNQNEELTVEDEALFEAAAGHNYVVVLNK
                     TDLETKLDIDRVRELAGENPIVSTSLVNDEGLEALEEAIKTLFFAGDIDAGDATYVSN
                     VRHIALLHQALEALNGVTTGIQLGMPVDIVQIDMTRAWDLLGEITGDSVQDELLDQLF
                     NQFCLGK"
     gene            17439..18257
                     /locus_tag="U0342_000657"
     CDS             17439..18257
                     /locus_tag="U0342_000657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase"
                     /protein_id="HEM2422017.1"
                     /translation="MKIHKLTWVLLMGLLLLSSCSTKQPNLYLSANAAAVYSVENGEP
                     LYEENADKVMPIASLTKLMTAFLVLEAVDNNELSWDEKLDLVRLDDPSAVSLYAITQK
                     RTWSVRDLYSAMLTMSANDAAETLGDRLDGANFPKEMNNQAKKLGMSSKTTFVSASGL
                     DVDGKSAVSTTKDLFLLSSKLISTHPEVLETTSKSSVTTDKGAKLESTNDSLGSIQGL
                     DGLKTGFTDEAGYCFIGTAERGGKRVISIVLDAGTAEKRFKDTEKLMEVGFKEN"
     gene            complement(18312..19019)
                     /locus_tag="U0342_000658"
     CDS             complement(18312..19019)
                     /locus_tag="U0342_000658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMUG2 DNA glycosylase family protein"
                     /protein_id="HEM2422018.1"
                     /translation="MTENTTIAKRILQFNEALANSSFDLPEGYRTVNPYSGDQSELVQ
                     KITTTFYQKYYNDTKLRRIILGSSPARRGSAVTGVPFEDAKHLQNETGIFIDKFYINQ
                     SSSDFLYDVMTEYGGCEAFYTDFYMNFVCPLGIVRMNAKGNEVNCNYYENKKLQEALK
                     PIILESLQNQIDCGIDTSVCYCIGSGENFNFLSKINEEHHFFDTIIPLEHPRFIMQYN
                     SKNKDVYMEKYLCALKS"
     gene            complement(19043..19570)
                     /locus_tag="U0342_000659"
     CDS             complement(19043..19570)
                     /locus_tag="U0342_000659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM2422019.1"
                     /translation="MARLSQEIILNMAEKIIYEKGMEKTTLYDIAGNLNVTHAALYKH
                     YRNKEDLFQKLALRWLEETSREIFDWTQEAGQTPDDALHDWLWLLADTKKKRYKTDRK
                     MFLLYTDYIEQNEELVKNHVAHLAQKAEEVSGRTNQGNAIITAFTYFHNPYFASRWEQ
                     AGYAELFEDVWHIVK"
     gene            19731..20462
                     /locus_tag="U0342_000660"
     CDS             19731..20462
                     /locus_tag="U0342_000660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2422020.1"
                     /translation="MTNKRVAFILGGSGGIGKAVVQKLVEQNFAVVVHYSGNKAKAEA
                     LVENIVKSGGEAISVGGDVADEAQMTRAFDFIESQFGGIDVVVNTAGIMKLSPIATLD
                     MDEFDLIQRTNVRGTFVVSKQAALRVRDGGAIINFSTSVTRTSFPTYGAYVASKAGVE
                     SLTLILARELRGKDITVNAVAPGPTATPLFLTGKDDKTIDNLAKATPLERLGQPEDIA
                     ETVAFLAGPARWVNGQVIFTNGGLA"
     gene            complement(20509..21702)
                     /locus_tag="U0342_000661"
     CDS             complement(20509..21702)
                     /locus_tag="U0342_000661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2422021.1"
                     /translation="MNQVKGEKHSLMVLLVLFIGYTSVYVDKYTIGISLVTVSQDLGF
                     DPSQKGLILSAFFLGYTLFQIPMGYLNNRIGARPVLAVSIIIVGLFLVIFGFGYSLLF
                     LVVIRFLSGALGHAGYPPSVSNYISLHIPLNKRGFAQSAMLASSGFAAFIGPLLIAQL
                     LLSVGWRNTYYWIGIAVILIGFLILIVVPKAPKIDLNAQKEKIKVPFSELLKDKQLWI
                     LLLSALFINAANYGLTSWLASYLNEVRGISISEVSYISSLAGLCILIAGVVGGYFISR
                     FFKGKEPIIIFAFCVLGAFAVYGVYLFEQLALSVICLCLCNIFLIMAFTTLMGLPHKL
                     FQQSHIATKYAAINSGGVLGGFFAPMIIGDLVNATNSYQSAFLFLALTLLASGLIVLA
                     IKKDQ"
     gene            complement(21790..22980)
                     /locus_tag="U0342_000662"
     CDS             complement(21790..22980)
                     /locus_tag="U0342_000662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2422022.1"
                     /translation="MRTKLMNMLQERKDEITQIRRHLHEHPELSFHEAETAKFIQDFY
                     KGKDVEMATEVGNGHAVVVTIKGGKPGKTIALRADFDALPIEEQTELPFKSKKPGVMH
                     ACGHDGHTAYLLVLADCLIQLKENIPGTIKIVHQHAEETPPGGAKSVVESGILDDVDQ
                     IFGIHVFPFGESGQVYYHSGFAMAGRTYFKLKIQGVGGHGSSPHMANDAIVAGAYFVT
                     AIQTVVSRRLNPFDTGVITIGSFDGKGSFNVIKDAVELEGDVRYMNTENRDKMDAEIH
                     RIVAGMEAMFGVTVELTYTNDYPPLYNDPAVTEQVVASLQKGVGEYLTGISEYDMLSG
                     SEDFAYYLQKIPGVFFYIGAKPKNTSNAYFNHHPKFDIDEDALLVAAKSVADVVLDYY
                     KLNG"
     gene            complement(22996..24396)
                     /locus_tag="U0342_000663"
     CDS             complement(22996..24396)
                     /locus_tag="U0342_000663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2422023.1"
                     /translation="MTSTAYKGTNKLIVGIVFGVITFWLFAQSMVNIVPAVQSDLGIS
                     SDLLSIAISLTALFSGIFIVVAGGMADKFGRVKLTYIGLILSIIGSLLLVVTQGATLL
                     IIGRIIQGLSAACIMPATLALMKTYFEGADRQRALSYWSIGSWGGSGICSFAGGAIAT
                     YMGWRWIFIISIVFALLGMLLIKGTPESKVVQNTKAKFDSFGLVLFVIAMVCLNLIIT
                     RGSTFGWTSPITITMLVVFLISAGLFFRVELRQANGFIDFSLFKNKAYTGATLSNFLL
                     NAAAGTLVVANTYVQIGRGFTAFQSGLLSIGYLVCVLGMIRIGEKILQRVGARKPMIL
                     GSGITAVGIALMALTFIPGTLYTVLVFIGFALFGIGLGMYATPSTDTAISNAPEDKVG
                     VASGIYKMASSLGGSFGVAISATIYGVIALSGNIDLAAMVGLLTNVGFCVVSLISVAI
                     TTPSAKKALELKAAKE"
     gene            complement(24396..25598)
                     /locus_tag="U0342_000664"
     CDS             complement(24396..25598)
                     /locus_tag="U0342_000664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466341.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2422024.1"
                     /translation="MEVWTMKEKLFQKLDEKRDRMIEIRRYLHEHPELSFQEENTAKY
                     IADFYKEMDCDVRTHVGGNGVVVTIDTGKPGKTLAIRADFDALPITEETGLAFASKNP
                     GVMHACGHDGHTAYMLILGETLIEMKQELTGKIVILHQHAEETPPGGAIQMIQDGALD
                     GVDNVLGIHVMSTMKTGEVFYREGAIQTGRSYFKLKVQGQGGHGSSPHLANDAIVAAS
                     EFVVAVQTVISRRLNPFDVGSITIGSFDGKGSFNVIKDAVELEGDVRSMSEEARNIIQ
                     KEITRIVSGIEAMFGVTCELDYKNDYPVLNNDEALTDFVVKSIKGAKIPEITDVVRCE
                     PQPPSEDFAYYAKERPSSFFYVGAMPADGHFYPHHHPKFDINEDSLLIASKAMGACVV
                     DYLKGENN"
     gene            complement(25792..28134)
                     /locus_tag="U0342_000665"
     CDS             complement(25792..28134)
                     /locus_tag="U0342_000665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2422025.1"
                     /translation="MSHLKDYTIGIQHIKQLTSEISLGTKLVFAISGQITIKVSEQKF
                     YLQEGDVLVLDRNTFYTIEGNEDNLFINLTISDTFFAHYYEDYFQHSFKFFSKESDPG
                     RERVVGSLRKSVSELLIASATKKRANKLEAQSALFQILLLLTRFLKKGIPSSARKEVN
                     DKRISRIIREVEERFDEALSLREFAQKEFLSEAYLSRYFKKTTGLGFLQYLTEVRLKH
                     AIQDLLHSAESITEIALKNGFSSQKHFSEVFKFHFELTPSEYRAEHHVETNLLIDNKT
                     SELGASIEQIVPSPEILVKLSRLYHDVEPGKELNKAPFEKKKIDITEKTERCLSENMN
                     ILTIGELKEVLKDNVQKQIITTRDEIGINYIGIRHLFRGSTFLPETETDELVPTSSPY
                     ANADLALTFLKQQNLQLFIRLEYQDIVGDEAAVFERLDHFLKHCMQVFGREFVSKWHF
                     MFFEPKNTYADKEELKKLYLKIYHTIKSRFPAIQVGNFVPFSLSKNAVPERHTWFLEE
                     ADKMDFVAYNANQNEAVDFSKEDMKSFSISEDYCLSKTLQLKAFLKHHHINKPLMLVN
                     WNTLSGNTRYTNGTFFRGALVLKTMLDLVPEVDALGFWINTELHEGDDSKLNISLDGI
                     EMFHFFNGKRPAFYAVKFLRRLKGVVVAKGEDYIMTKHADGYQLILMNCATINPRYSV
                     EERFIKEEQKEVHIRLTGLYAGDYQVCKWQFDRDNGALYSKYWQLNSKYGLDKEILDY
                     IVDASQPTLTVSDETITEDWSFYAYLDINAIHFYEFRSTV"
     gene            28347..>29279
                     /locus_tag="U0342_000666"
     CDS             28347..>29279
                     /locus_tag="U0342_000666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2422026.1"
                     /translation="MKTSKIIIASLVSLTLVSNPILTFAATNDVIDNTTEITTDKETS
                     PTQPTIKNTLKAGQTQSFNDWFPDDNFASEVAAAFEMQATDTISEEQLATLTSLDCHN
                     SSIADMTGIEKLTGLTKLICTYNNITTLDLSQNTNLTYLACDSNKLTNLDVTPLTKLT
                     YLNCDTNKLTKIDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLDVT
                     PQTQLTTLDCSFNKITALDVSQNKLLNRLNCDTNNITKLDLNQNIQLTFLDCSSNKLT
                     EIDVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLH"
BASE COUNT         8405 a         6347 c         5010 g         9517 t
ORIGIN      
        1 gtacggtttc ttcattcgta tctacattat taaatagtgc attgattcct ttacctagac
       61 ctttagccat gtgcaaccac ttcctttgct aattctaaat aaacttcagc accttttgat
      121 tttgcatcat ataacaaaat cggttttcca tgactaggtg cttcacttag acgtacattc
      181 cgtggaataa ttgtattaaa tactttgttt tggaagtatt ttttcacttc ttctattact
      241 tgaataccta gatttgttct agcatcaagc attgttagta aaacaccttc aatttgtaaa
      301 tcctcattga gatgcttttg gacgattctt attgtattta gtaactggct taaaccttct
      361 aacgcgtaat actcacattg aacaggaatt aaaacagaat ctgctgctgt taatgcgttt
      421 aaagtcaaaa gcccaagtga tggcggacaa tcaataatca catagtcata atcatcacgg
      481 attgagtcga ttgctttttt caatctaatt tcacgagaga tagctggaac tagctctact
      541 tctgcacctg cgagttgaat tgtagctgga ataacattca aattatccaa gtctgttttt
      601 tgcaacacat cttgaatggc tacatcgtca actagtacat cataaataca atgttcaatt
      661 tcacctttgt taacaccaac gccacttgat gcattacctt gtgggtcaat atcaactagt
      721 aacactttct tacctaaaaa agctaggctc gagcttaaat tcaccgatga tgtcgtctta
      781 ccaaccccac ctttttggtt tgctagtgca atcactttgc tcaatctttt tcaccaaccc
      841 ttattttgta ccgagatttc cggttctttt atcttctatt ctaccaaaag attttcattt
      901 agtcttacaa aaagtaaaaa taaattgaaa ttcgtatttt gaaagcttaa aaatggtgaa
      961 aataacgttt tgaaaaccta gaaatgtttc acgtgaaaca ttttaaaata aaaaaagcaa
     1021 ccaacctaag ctgattactt ttctatcttc aatctacaga gaatgttgtc ttaacaccta
     1081 gaaccgtgca gactttttga tacattctaa gagtcaaatc tggatcccct gcttctaaac
     1141 gcccaataat aacaggagat aaatctgatt taagcgctaa atctagttga gaccatttct
     1201 tctccattcg tttagagaaa atatatttac caaggcttgc tgaaaaacta tctaagtaat
     1261 gagcaatgcc ttcatttgct aaagctttat tttttagtgt ttcgaattga tagtctgcat
     1321 gaccaatgct tgtttccgct tcaatacgac gcaagaatac gcgtttgact tcttcgcggt
     1381 aagcactcat ttgatccgtg aacgggtttt tatctttaaa atagccttta acgaaacaat
     1441 aataggtttc atcgccacta aaagcagtga agtaaattaa acgacaattt ttatctttaa
     1501 aatgtgcttt catctcttga atcggttggt ctacagttgt ttccactcga gttgtttgta
     1561 gtgagtaagc ttgactttta ccgataatta aatggacatc ggggagaatt tgcttaccag
     1621 tgctaagttt tctcgtttct gctgtttcta gttgtaacag gccttgaaat actaaagtgg
     1681 ccattagtgg ttcttccaca attaaatttt gtaagaaatc atacgcttgg aactcatttt
     1741 gttcgtcttt cacaaaaatg atttttgcca ttcgtttcgt gattccactc agagttgagt
     1801 gaatcactcc ctcctttaca actttaccta attctattgt acttttttct gctcaaaatt
     1861 gcacttattt tctctatttt ttacaaaata aaccaaaccc actcgaattg agttgctttc
     1921 cttttttgaa aataaaaaac ccgcttcaat aagcaggttt tgcagctatt ttttcgcttc
     1981 tttcgcgatt tggtaccaac tgtaaatctt cactatcgca aagaaagtat agccaaatgc
     2041 gatgagatat gccccgtaat taattaatag aatgttgaag ccacttcccc aaccagactc
     2101 ttctgctacg gctactgctc gggcataggg gctagtgaaa aagtaggtaa tatatagtgg
     2161 attaaaactt aaaatagcac ttgtaatcgc tattacgaaa gatggaagta ccatcaaaca
     2221 actaatgaca ccaactgcat gtccaattat cttcaaaaac ctcactgcta cacctcttat
     2281 ttctttttag gaatttgaat ggtaatttga taaaaatcat ctgtctcttc ttcggtgaaa
     2341 tctaggtcca ttccgttatc tttaaccatt gtaaccgatt gtttaatcgt attcatagcg
     2401 atacgcacgt cacgactaat agcttggcgt tttggtttgg tttttttagt agctactggt
     2461 tttttcacgc ccaaaatttc ttgaattctt gcttcggttt gtttgacgtt ccagtgattt
     2521 tcagctattt cggctaaaat tgcgacttgc tgttcttctg tttctaatgc gagtaacgaa
     2581 cgagcatggc gctctgaaat ttgtttgtta agaacggctt cttggaccgt ttctggtagt
     2641 tttagaagtc gcattttgtt tgcaatggca gactggcttt tcccgacacg ttgcgcaagg
     2701 gcttcttgtg tcacgtcctg catgtctagt aaactccgat acgctttcgc ttcctcaatt
     2761 ggcgtcaatt cttcacgttg caagttttca attaacgcaa tcgctgctac ttcttcatca
     2821 tctaaatttt gaataattgc tggaattttt tccatttcta aagaaagcac agcacgaaaa
     2881 cgacgctcgc ctgcaatgat ttcataataa tccggttcca tttctctaac cacaatcggc
     2941 tgaataacgc cgtgaattcg gatagttcga gcaagttcat caatcttatc ttgatcgaat
     3001 actgtccgtg gttggaattg gttcgggaaa attttatcca taggaagttc ttgtacgcgt
     3061 tgtactcctt cttctactat atcatccatt tgattcttct ctttttttcc aaataaacgt
     3121 gaaaaaggca tctgggtcct tcctttccgg aacatctcgg ggtttcttaa tatattatct
     3181 ggctatccgc aagtctctta aactatttta gcagaaatgc tagagaaaaa cacgcttatt
     3241 ctgtccttta aatgtgaaaa aatagataga gctgctaaag tttcacagtc ctatctattt
     3301 tcttaatgaa attcatcggt aacggtattg atggtttttt ccatattgtc gcggtaagac
     3361 tcattttgta gcaacatcat ggaaataata tccatcacat acataatcga aaactggcta
     3421 ttagcaaaat accttttact tacgaataaa gtattgtaaa ccggaatagt gacgtcactg
     3481 atttcggtca tttcactatt ttcaaaactg gtaaatgtag caactttact tttgtttttc
     3541 ttagcgattt ttagcgccgt gactagctct ggggtgttac ctgaattgga aatgccgata
     3601 acaaaatctt cttttgttgt gatggagcta gtgataatca tcatatgcgg atcgttgaca
     3661 ctgatgacgt ttaaccccat tcgaataagg cgctgcgaca tttcaacggc agtgagcccc
     3721 gaacttccga cgccgcaaat atagactcgc ttagcttctt gaatgtactg caccacttca
     3781 cggatcttcg ctggttcaat cagcttcacc gtgttatcaa ttactttatg gtagaacgaa
     3841 taaacctctt caaaaaggtc atcataacca agtgacggaa ccattgtcgc tgcagtattc
     3901 acccgcattt tcaaatcaac aaaactatca cagcgtacat ggcgacaaaa tctcgttatc
     3961 gtcgaaatgg atgtgccagt ttcttcagct agctctttaa tattaatatt cttgagttca
     4021 tcactttttt ctaaaatata cttcgcaatt tgtttttctt tattcggtaa tcgattgtaa
     4081 ttttgttgga tttcatttaa aatcgtcatc tttttcggcc tctttctggt ttaagaaatg
     4141 ataaagcgca ccaatcatcc ctgcttcatt tcccagcttt gcgaaagtaa tatctgctgt
     4201 atcgaacatc ggtgagatta atttggttga gatagccgct tttagacgcg gtttgaagaa
     4261 tgactcttct tccattaatc cgccaccgag tacaatcact tctgggttga aaatatagat
     4321 taagtttact acaccttcta ctaaattctc aatccattgc tctatttcag ccagcacatc
     4381 tgcatctccg ctataggccc attccatgac ttgacgacca tttaacgcat tttcctcgat
     4441 attttttcgc gaggctactt gtttaatcaa tgcttttgtt gaagcaacat cttgaaatct
     4501 cccttgtgaa aggtgcatat agcccacttc acatgctgta aaagacgatc catttattag
     4561 tttgtcgttt agtaacattg ctccgccgat tccggttcca attgtcaaac agagcacgct
     4621 cccacgtccc cgtgctccac ccaaccaaaa ctcgccaagg caggctgcat ttacgtcatt
     4681 ttccactacg cacggaatat gaaatcggtg ctctagttca gcttttattt cagttccagt
     4741 gtatttggga atcgtgtagc cagcataaat aattttgcct ttcacagaat ccacaacacc
     4801 cgcagaggcc acacagacgc ccgctacatt cgttttttct tgttcgacaa tccgaataag
     4861 cgcgggcatg atttgattcg ctccgccagt tataggcgtc acacaagact taagatcgcc
     4921 cacccgctta ccttcttgat taaatttagc atatttgata ctcgttccac caatgtcgac
     4981 acaaagataa ttttccattt cttcacctct ttagtgaaat tattatcctt cttttgttaa
     5041 ctcgtcgtaa aacgcttggc ttgaatttgc ttcgatcaaa cgggttacct tttcctcgtc
     5101 catgagcact tctgcaagct ctgacaacac ttctaaatgg ctttctgagt ctgttgccgc
     5161 aagggtaata actagtttca ccgggtcgaa catgtcgctt ccaaaagcca cgccgtcagc
     5221 cagtgttgca aaagttaggc caccgcgaat gacgccgaat tctggtcgtg tgtgcgctag
     5281 ggcgatatgt ttagcaatca ctatatatgg tccattattt tctacacttt gaatcattcc
     5341 gtcaatataa ctctctttga tagcgcctcg ttctagtaaa agtcttgctg atgtttggat
     5401 ggcttcgcgc cagtcttttg cttttaaatt tacctcaata tcttctaaag taactcggtc
     5461 taataacatg ctcgcgcccc cttatttatt atattcagcc attatttctg ttaaatctac
     5521 ctccgccagc gactctcgct ccaaatagtt cggggttaaa tcactatgtt ttgttacttc
     5581 atttggaatg acaagaacat tgacacccgc actatttccc gccaaaaggc catttcgcga
     5641 gtcttctacg ataagagcct ccgatggctt aacatccagt gctctcaaag cttctaaaaa
     5701 caagtccggt tccggcttga ttcgcgtaac atcctccgcc gtaataatcg catcaaaata
     5761 tccgagtaag cctagtcgtt ccaaatgata gagtggtttt ggtcgctgcg atgaggtcgc
     5821 aagtgctaat tttaatccac gttcttttaa ttcacgaata aagctttcca cgccttcttt
     5881 ggccggtaaa cttttactgt tttcaataaa cgttgcttgt gtttctgctt cgaagtcttg
     5941 tcgattaata tccatttgct ctgtccggtt gagttcgcga aacaaatcgt ccacatttga
     6001 cccaacgcac tgcaaaaact cctcgataga aaggtcataa ttctgcttcg ttttaaacca
     6061 ttctttaaaa atttcatacc aaactacttc tgtatcaata acaattccgt caaagtccat
     6121 cacaatcgct tttaacattg tcttcctcct acccatttta ctattcaaag cgctcctaaa
     6181 aagaagcgct tacaaataag ttaattcttt tgttctcggt ctgcaactat tttatctatc
     6241 agttcttgat attctggtgc gccgaggtaa tccgttattt ctacataata cgcatctggt
     6301 tgcttttctt tggctcggtc gataagggat ttatgcgtca cgactacatc gcattcggtc
     6361 ggcaattcgt ggatggcgat atggaacact ttaatatcct ctaagccagc atttttgatt
     6421 tttttctgta gtacggtcgc gcccatcgca ctagatccaa gtcccgcatc acaggcataa
     6481 gcgattcttt taacattttt aaaattaaaa tcatctactg tagcttcgaa aacggaggaa
     6541 atactgctct ttttgccttt aaggctttcc attttcttcg ctgcatcttg tagttcagag
     6601 tctttgttac ccatgcgttt aataaatgga atggcagtaa tgaatgtaac aagtgccgca
     6661 catagcaccg caataaggat cttaatgtga tcgccgggtg ctgccatcat catgattgtg
     6721 ataatactac caggagaagc cacaccaaca agtcccgcat ttgtcattgt taaaataaat
     6781 gttcctgtca taccaccaag aattagcggt aaaataagaa ttggattcat taaaacgaat
     6841 gggaagtaaa tttcgtgaat accaccaaat aggtgaataa cacttgcccc gtaggaagat
     6901 gctttggagt ttcctttacc aaagaacata tagccaagca aaattccaag tcctggtcca
     6961 gggtttgatt ctagtaagta aagcactgat ttccctgttt ctgcgagttg caaggtggct
     7021 agtggactta gaataccttg accgatcgca ttgtttaaga ataagacctt ggccggctca
     7081 ataattaaag ccgttagtgg gagcaaatga ttattgatta atacatccac gccacttgct
     7141 aatacttttg ttacagcttc gaccattgga gcaatcgcca cataagaaaa tagtgctaat
     7201 cccgctccaa ttatcccaat cgaaaagttg ttaactaata gttcaaatcc agctggaatt
     7261 tttccatcaa tacgttcatc aaattttttg agtatccaag ctgcgagcgg gcccattatc
     7321 attgcgccaa taaacatggt tatatccgaa ctaataattg ctcccattgt cgcaacagta
     7381 ccaataactc cgcctcggta accgtgaacc gctcgacctc cagcaaaggc aataagaagt
     7441 ggtaacaagt aatttagcat tggtgcgatg aaccctttta acatctcaga gcctgtagcc
     7501 accccaattg ccgttaaaat accccaagcc ataaaagctc ccaaattcgg aatgaccata
     7561 ccacttagct tactcccaaa cttttgtaca tgtacccgaa tagacatatt tccccctcca
     7621 atcatatgtg tggcgcaatt ttatagtgat acttctttcc cctcagcaat cgaacgttca
     7681 atcgcatcta ctactcgtaa ggaatcatac gcttcttttg gtgtaataat tgattttgtg
     7741 ttattcgcca cgttattaat aaatgccatt acttcctcag ctaaatcgcc ggaaacttcg
     7801 ccatttgtgt aataccagtg tcttgaatcc ggataagata cccctttttc actaacaaaa
     7861 cgaacaccgt ggtcgcaaga gtctacatat gctacgcctt ttgttccgac taattcaagt
     7921 ttgtcgtcaa tgatggttgg cgaattttct ggcaagaccc agcaagcttc caggcaagca
     7981 attgcgccat tttcgtacgt tacaatggca taaatcacat cattcatgcc gtattcttta
     8041 agtaaaacac tgcgactttt ggcaataact ttgactggct cgctatccat gtaccagtta
     8101 atataatcaa tatcgtgaat cattacgtgc atacttaaat cagaagcacc tatgtaacgc
     8161 tttggcccgg taattggact gttacgacga caataaagat gaataatatc acccaattcg
     8221 ccattatcga ggcgctgttt aatcatatta aaacgaggat caaatctgag taaaaagcca
     8281 actgtaaaca ctttgtcgta gtctttggtc agttcataca ttgctttgcc gtcttccagt
     8341 tcttttgcaa gtggtttttc gagtaaaatg tgttttttgt attttacggc ttcttccacg
     8401 caatcacggt gcatattatc aggtaaaaca atgctcacag cttcaatctc cgtatttgct
     8461 agaagttcgt ggtagtcttt gtatgcttta cactgaaatt tttctgccat ttcggcgcgt
     8521 ctttcatcgt tgtactcaca aattgctact aactctactt gcggaagctt ttggtaaatt
     8581 tctgcatgat actgccccat ttgtccaacg ccaattacgc caactttgat ttgctttgtc
     8641 atatcactta cctctttctt cttagatttt tttaatttca tttgtaaagc gggtggttat
     8701 ttcctgtggc cgagttactg cgccgccaac aacaacggca taacaaccta acgtaagaac
     8761 ttgtcgtgct ttactaggcg aatcgatttt cccttctgca atcactgggc gcttcgtact
     8821 tttcaaaact tctttcaaat gggagaaatc gtcgtcgctg atatttttat tcgctgtttc
     8881 ttcggtgtag ccgtaaagtg tcgtgccaat taagtcaaaa ccgagggaat cagcgtaata
     8941 aacgtcttca atactacctg tgtctgccat gaaaagcgtg tttggaaact cttttcgaat
     9001 ggcacttagt atgtctttga ggtcttcgtt atgtggtctt tttctcgttg ttgcatccat
     9061 cgcaacaatt tctactcccg tttcacatat ttctctgact tcttctaagg ttggtgtgat
     9121 aaatacgtcc gaatcatcgt agtctttttt gtaaataccg ataatgggga cgtcgatctc
     9181 actttgaatt gccctaatat cttttgcggt atttgctcgg ataccaacag caccaccttg
     9241 aactgcggcc agagccattt tcgacataat aaatgcacta tgaagtggtt cgtcttctaa
     9301 agcttggcag gaaaccacta acccgccttt gattttttcc ataacagaat tgcccactga
     9361 tactcctcct ctatactgtg tttcagtgta aagtatgcgt tttcaaacag actatatcat
     9421 aagaaaatga ttttatcaat atcaattaaa tgaaaattat tttcatattt tagtgtggct
     9481 agttgcggaa actagcttta aaaaatgacg ttgctgttaa aaataaaaag tcctttcgtt
     9541 tgaaaggact ttgttagttt attcgattgg taatttgttg ggtgttccgg gtttgcgtgg
     9601 atatttgttg ggggtttctt ttgttttcgt gatgacgtag atattgcgct cgctttcttc
     9661 tactggtagg aagaaagaga agtgttcctc gacttttccg ccgaatagtt tgatggcttt
     9721 ttcggcagtt tgcagctctt gttcggcttg ggctgctttc attactaaga acgaaccgcc
     9781 ttttttgaca agtggcatgc aaagctcgga taatacgctc attcttgcta cggcacgtgc
     9841 ggttacaagg tcgtattttt cgcggtgcgc tttgttttga ccaaatgttt cagcgcgatc
     9901 atgataaaaa tgcacatccg ttagacctaa tttttctgct agcgcatcaa ggaaagtcat
     9961 gcgttttttc aaggagtcta cgatgcttac ttttagatgc gggaagcaga ttttaattgg
    10021 gagacttgga aaaccagcgc cagccccgac atcacaaatc gtatcgaact tagtaaagtc
    10081 tacataaacc gcggcagaga tagaatcgta aaagtgcttt aaatacactt ctttttcatc
    10141 agtaatagct gttaaattca ttttttcatt ccattctact aacatttcga agtaatcgtg
    10201 gaattgtttt agttgcgtgt cgcttaattc tattcctttt tcagcaagtg ctgtttggaa
    10261 ttgctctgga ttcatatttt ttcctcactt tattttcgcg atttttgccg tgtttaggat
    10321 ggtagacggg tttggtttat acttttaaac aggcttgtac catatatttt agctcattat
    10381 tttcaagtat aagtattttc gttcttttta gcaagttcgt attacgttta acaattatca
    10441 aacttgttgg cattctcttt aaaacttttt ttggcttgat ttacccattt tccttctgct
    10501 gtggtggaaa gtccatctat gtaaccctga caattgcttt ttatatctgc tattttgtcc
    10561 cgtttgatca ttttgaacat tcgtttgcga ttttctgatg ttgcatgagt ttggctcgcc
    10621 acaaacatcc caataagatt tttttctaga tttctgcgtg actctaataa ttctgctttt
    10681 agtttatcta tcatgttata gatcacgatc cttttttagc tgatgtagtt cttcttcata
    10741 agaattcact tgtttcttat aaagtgcttg atgctcttcg tgttcatttt ctagctttgt
    10801 tagtgtgttt tttactttcc aatcgccttc ttcttggata gaactgatta aatggtaggc
    10861 tttttgcaag tcttcagatg cttcgtaatc tcttttttga tggatatacc tgatttgttc
    10921 agaaaggttt tctagttctt ggtgaaaccg ccatttttct tgagatgcgt cgtccatcgc
    10981 ttcgtccaat tgtcgtcttt ttctattaaa atcattatct aaattttcta gttttagcag
    11041 tagttgtctt tgtttatcca tacatgctcc ctatttgttt ggctaattct tggtcggttt
    11101 ttagctggct ttttattgct tcgttgattc gttctagcaa tttatcatac tcttgttcta
    11161 ttttggttgc ttcgactaag gatttttcgc aatcttgcac tgtgtctatc acaatttccg
    11221 gctcagtcgc cccgccccaa gcaagtgcgg cgagtatttc tgactcatat agattggagc
    11281 cgatatccct tgcatctgaa agcgtatcgc gccacaactc ttcagcattc tcgatttctt
    11341 tatcaaaaac atcttttaaa gctctaattt cgccttgaat cgtttgtttc atcccttgcg
    11401 taattgctag tgcttccgct gcatccaaga atatttcttc ggatgaggat aggccaccac
    11461 cgctttttgt aaaactggtt cgcatgatgt tgatagctgc taattgttgc gctgttacgt
    11521 atttagctaa ttgaaggctg ccttctttat ttgttaggat gtttccttct ttgtcaaact
    11581 gataaccacc ccacatatgt tgctcaacca taccagcttt tttcgactca acctctatta
    11641 aatggccaat tgtcgggtct ccgataccat aaccaattgg cacataatcc ttcctatcaa
    11701 taaaattaaa taatctatct aaagcgttta ttgcttttac ggtatcttgt tgttttggcg
    11761 ttaggttgga gtagatattc gggccttggt agaagaaacc gccgctgatg cgtttgatgt
    11821 cttttttatc taagtctgcg atagcgtact gggcgttcat ggagcctaga gaatgaccgt
    11881 atacatagat ttgggcgttt gggtagagtt tcatggtttg ttttaaggtt tctgcggagg
    11941 tttttagttg gggtgttact gtggatcctc cgccatttgt gatttggatt gcggttggaa
    12001 tatcattact taaccagtcc ttcctcacat ctttataatc tggatgtttt ggaacattaa
    12061 agtttccatt agccggtgcg gtagaacctt tgtaaaggat tgttagttct tttactttgt
    12121 ttctttcgct gatggaggct atgggtggcg tgtatttgtc tgtgatgatg taggattgtt
    12181 ccccggttga tttgttgttg attttttggg atacgattcc gatggtattc gttcctccat
    12241 tgacttttga gatagttaca tcttctgtaa ggtataaatt atcatactct tttcgcgcca
    12301 gtctcattct ttcgtaatca ttattaggta gactcatgag ttctccttcc aacgacctaa
    12361 cagcttggaa agttttccag ctatacttgc gcttccacac tctaatttgc cattaaattt
    12421 atccaaagta tattttatat acaattctgg attttcattt atgattactg taacattaat
    12481 acctcccata ggattgtgat taatgctttt ttcatcaatt tcatatgatt gaattacgcc
    12541 ttctttagtc aatgcttttg tatctaaatc ctttaagcct ttgtaaaaag catttttcgc
    12601 ttcatcacta taaaccactt ttatcatttc tttatttaat ttctcttcgt ccatatagaa
    12661 tttcacccct aaaccaaaaa tggttattac tgtaattgct aatattatta tccatctctt
    12721 tttcaactct tcacctctgt tgtatgactt tttatttgta ggtctatttt atcacatgtt
    12781 agaaattttc actttctttt ttttcagtct tttaatcgcc tctcagctct ataaaaattc
    12841 atttataacc gttcaaaagc cccaattgtt ttgtaagctc cttagatatg cttgctccac
    12901 cactctttaa ttcttcatta tttttttcaa cgtgtatgtt aatttcaaag caggatcctt
    12961 gttaataact aatgcaacta ttattccgcc cattggatta ggctctatac tttccttgtc
    13021 aacttcatat gattgaatta gcccttcttt tgtaaatgct ttcgtatcaa taagttttat
    13081 atcatcattg aatacttctt ttgcttcatt gctacaaacc acattcatca tttctgtatt
    13141 taatttctct tcatccatat aaaattttat ccctagacca aaaataatca ttattgcaat
    13201 tccaaatagt attatccatc tctttttcac acattcacct ctgtttttat tttcttagtt
    13261 gtctaataat tttcctaatt ttgcagaatt tccgccacca tcatcaatta gttttttgtc
    13321 atcagcttta ttcaatgtaa aaaaaacata taactcagaa tctccattaa cgtgcaaagt
    13381 aacattgatt cctcccatag ggttttgttt gatacttttc ttatcaattt catatgtgtt
    13441 aattacaccc ttcccagtca atgctttagc atccaaattt ttcaacccat tttcaaaaac
    13501 tcttttcgct tcatcactat atactacatt tatcatttct ttatttaatt tctcttcatc
    13561 catataaaat ttcacgccta atcccgcaac aatcattact acaactacca ttgctataaa
    13621 ccacctcttt ttcacacatt cacctctgca gtatgtcttc ttctatgtaa tcccaatcta
    13681 ccttaattaa aaacaagaaa aaaccacatt attcagcgga aactttcaac ttaaacggta
    13741 agtttgaagt tttcgtgaac atgtggtttc agtaattata gtaatccgtg ttcttattta
    13801 cttattttag ctatctttcc ttgctcaata taaactaaca aaatagatat atcggctggg
    13861 tttactccgc tgatacggct cgcttgggcg atggaaaggg gttcgatttt ctttaatttt
    13921 tctagggctt ctgttgctag gccgctgatt gcatcataat cgatgttttc tgggattttc
    13981 ttgtcttcca tgcgtttcat tttttctact tgaaggttgg atttttggat gtagccttcg
    14041 tatttaattt gaatttctac ttgttcagcg atttcgtcgg tcacaaatgt ttcacgtgaa
    14101 acaatttggg cgatcttgtc gtaagttatt tcgggtcggc gaagtaaatc tgctgctaga
    14161 attccgtctt ttagctcgcc tgagccgatt tcttttagca ttgcttggac ttcagcagtt
    14221 ggtttaatgc gtgttttttg tagtctttct ttttctgctt cgatggcact ttgttttgct
    14281 aaaaagcgtt cataacgttc gtcgctaatt aagccgattt catgaccgat ttctgttaaa
    14341 cgtaaatctg cattatcatg gcgtaatagc aaacggtatt cggcacgaga tgtaagtaaa
    14401 cgatatggtt cttcagttcc ttttgttact aaatcgtcaa ttaaaacgcc gatataagct
    14461 tggtcacgac caaggataac tggttctttt tcaaagactt tacgtgcggc attgattcct
    14521 gccattaatc cttgtcctgc tgcttcttcg taaccacttg taccattaat ttggccggct
    14581 gtgaaaagtc cttcgactaa tttagtttca agtgatggcc acagttggtc tggcataact
    14641 gcatcatatt cgatagcgta gccaacacgc atcatttcta cattttcaag tcccggaata
    14701 gttcttaaca tttcacgttg cacttcttct ggcaaactgg tggaaagacc ttggacatat
    14761 acttcttcgg tatttttgcc ttctggttca aggaagattt ggtgtcttgg tttgtcgctg
    14821 aaacgaacaa ttttatcttc aatggatggg caatatcttg cgccagtgcc tttcttcgtt
    14881 gctgtaaaca ttggtgaacg gtgtaagttc gcttggatta tttcgtgggt tgtttcgttg
    14941 gtataagtta accaacacgg tagttggtca agcaacattt ccaccgtatc aaagctaaat
    15001 gcccgcggat gatcgtcacc cggttgttct tctgtttttg aatagtcaat cgtacttgat
    15061 tttacgcgcg gtggtgttcc tgttttaaag cgacgcagtt caaaacctag ttcttccagg
    15121 tgttctgaaa gtttcacaga aggttgttgg ttgtttggac cgctggaata gcgcagttca
    15181 ccaacaataa tttcgccacg tgagaaagtt ccagtagtaa taacgactgt tttcgcgtag
    15241 taaatcgcgc cactgtttgt aataacgcct ttacacacgc catcttcaat cactaaacgg
    15301 tcaacaagtc cttggcgcaa agtgatattt tcttcttttt caattgtgtg tttcatttcg
    15361 tgttggtaat cccatttgtc tgcttgagca cgtaatgcgc gaacagcggg acctttacct
    15421 gtatttagca tccgcatttg gatatacgtt ttatccgtgt tgcggcccat ttcgccacca
    15481 agagcatcaa tttcgcgcac aaccacgcct tttgctggac ctccaacaga aggattacat
    15541 ggcataaaag cgaccatatc taaatttatc gttaacatca gtgtttttgc gcccattcga
    15601 ccactggcaa gacctgcttc tacacccgca tggcctgcac caacaacgat gacgtcaaaa
    15661 gttcctgcat cataggtttg cattttataa aaacatctcc taaaaaatca ttttccaagg
    15721 caaaattgat tgaacaactg atcgagtaat tcatcctgga cagaatcacc agtaatttca
    15781 cctagtaaat cccatgcacg agtcatatca atctggacaa tatccactgg cataccgagc
    15841 tgaatccctg ttgtaacgcc atttaaagct tcaagtgctt ggtgaaggag cgcaatgtgt
    15901 cgaacgttcg atacatatgt tgcatcaccc gcatcaatgt cacccgcaaa aaacagtgtt
    15961 ttaatcgctt cttctaaagc ctctaaacct tcatcgttta ctagagaagt ggaaacaatc
    16021 gggttttctc cagcaagttc acgcactcta tctatatcaa gctttgtttc caaatctgtt
    16081 ttatttaaaa cgaccacata attatgaccc gcggctgctt caaataacgc ttcatcttcc
    16141 actgtcagct cttcgttttg atttaatact agcaggataa aatcggcatc cgccaaggct
    16201 tttcttgaac gttctacacc aattttttcc acaatatctt ctgtctcacg aattccagct
    16261 gtatcgatta aacgcagcgg aacaccacga acattgacgt attcttctat aatatctcgc
    16321 gtcgtccccg caatatctgt gacaatcgct ttttcttctt gaattagttg gttaagcaag
    16381 gacgatttcc caacatttgg tcgaccgata atggctgttg ccaatccttc gcggagaatt
    16441 ttcccttggc ttgctgtttg taaaagttgc tcgacggaag cgcgaactag ctcggttttc
    16501 tcgagtagca ttcgctgagt catttcctcc acatcatcat actccggata gtcgatattt
    16561 acttcgactt gcgctagtgc atccaaaatt tcttgacgta aattgcgaat caaccgtgaa
    16621 agatttccgt ccatttgccg aattgccacg cccatcgccc ggtctgtctt ggcgcgaatt
    16681 aagtccatca cagcctccgc ttgcgacaaa tcaattcttc catttaaaaa tgcgcgcttt
    16741 gtgaattcgc ctggttcagc taaattagcc ccatttcgaa gtaacagttg caacacgcgg
    16801 ttcacggaaa caattccgcc gtgcgcgttg atttctacca catcttcccg tgtaaaagta
    16861 cgcggcgcac gcataactgt gaccattact tcctcaatca cttcgccgtc ttcttttata
    16921 tgaccgtagt gaatggtgtg actttctgct tcacttaagc tatttttggc ataaaaaata
    16981 cgatccgcta tctgaatcgc ctctggaccg cttaatctaa taatagcaat ggccccttct
    17041 cccggcggtg ttgagattgc agcaatagta tcaaattcca ttctttactc atcctttctc
    17101 attagaattt cagctcaaat aagccttatc ctattttgaa taaattttgg cacatgattt
    17161 tgtgcatttt caacaactta cgctccgctt tgaccaaagc aattaaattg ttagtatttt
    17221 gaaggttatc catagactta ttaacatatc cacagaaaaa ccattaataa aaattcatcc
    17281 ataccatttt aacttatcca catgtgaata acaatagttt tatccttact agttaagaaa
    17341 acttaaattt tctagttaaa gctttaactt atccttccac ttccttggct ttaactcaat
    17401 tctttttatc tatactaaag ttaaaaggag gagaaaaaat gaaaatacat aaactaactt
    17461 gggtgctatt aatggggcta ctactgctct catcctgttc cacaaagcaa ccaaacctat
    17521 atttgtcagc aaatgccgcc gcggtttatt cagtcgaaaa tggtgaaccg ttatatgaag
    17581 aaaacgctga taaagtaatg ccgattgcca gtttgaccaa attaatgaca gcttttttag
    17641 ttttagaggc tgtggataac aatgaattat cgtgggatga aaagcttgat cttgttcgat
    17701 tggatgatcc ttccgcggtt tccctttacg cgattacaca aaagagaaca tggtccgtca
    17761 gagatttata cagcgcgatg ctcactatgt ctgcaaatga tgccgcggaa acactgggag
    17821 atcgtttaga cggagctaat tttcccaaag aaatgaataa ccaggctaaa aaattaggta
    17881 tgtcgagtaa gactacattt gtcagtgcta gcggacttga tgttgacgga aaatccgctg
    17941 tttctaccac aaaggattta tttttgctat catctaaatt aatttccact catcctgaag
    18001 tgttagagac aacatccaaa tctagtgtca ccactgacaa aggcgccaaa cttgaatcca
    18061 ccaatgactc actcggttcg attcaaggct tagatggact gaaaactgga tttacagatg
    18121 aagcaggcta ttgctttatt ggaacagctg aacgtggagg aaaacgtgtg atttcgattg
    18181 tcctagatgc gggaactgcg gaaaaacgat ttaaagatac agagaagctg atggaggttg
    18241 gatttaaaga aaattaacga atgaaaagaa cctctctttc gctgagaagt tcttttttaa
    18301 atagttcagc atcaactctt taaagcgcat agatactttt ccatgtatac atctttattt
    18361 ttagaattat attgcataat aaagcgtgga tgttccaaag gtatgattgt atcaaaaaaa
    18421 tgatgctcct catttatttt cgataaaaaa ttaaaattct cgccgctgcc aatgcagtaa
    18481 cagaccgaag tatctatccc gcaatctatt tggttttgaa gtgattctaa aataattggc
    18541 ttcagcgcct cttgtagttt cttattctca taatagttgc aattaacctc attgcctttt
    18601 gcattcatac gaacaatacc aagcgggcag acaaaattca tataaaaatc agtataaaat
    18661 gcctcacaac cgccgtattc tgtcataaca tcatataaaa aatctgagga agactggttt
    18721 atataaaatt tatcaataaa aataccggtt tcgttttgaa ggtgttttgc gtcttcaaaa
    18781 ggaacgcctg tcacagcaga acctctccgc gcgggagaac ttccaagtat tatccggcgc
    18841 agtttagtat cattatagta tttctgataa aatgtggtcg ttattttttg cactagttcg
    18901 ctttgatcac cagaatatgg gttaacggtg cgatacccct ccggcaaatc aaacgaacta
    18961 ttcgcaagcg cctcattaaa ctgcaatatt cgtttagcaa tagttgtatt ttcagtcatg
    19021 taaattagcc ctctctttat ttttatttca caatatgcca aacatcctca aataactccg
    19081 cataacccgc ttgctcccac ctgcttgcaa aataaggatt atgaaaataa gtgaacgccg
    19141 taataatcgc gtttccttgg ttcgttcgac cgctcacttc ttcggctttt tgtgctaaat
    19201 gggctacgtg gtttttcact aattcttcat tttgttcaat ataatccgta taaagtaaaa
    19261 acatttttcg gtcggttttg tatcgttttt tcttagtatc ggccaagagc caaagccagt
    19321 cgtgaagcgc atcatctggt gtttgccctg cttcctgtgt ccaatcgaaa atctcccgcg
    19381 aagtttcctc taaccaacgt agcgccaatt tttgaaataa atcctcttta tttcgataat
    19441 gcttataaag tgccgcatgt gtgacgttca aattacccgc aatatcatac agcgtcgttt
    19501 tttccatgcc tttttcgtaa atgattttct ctgccatatt taaaataatt tcttgtgata
    19561 gtctcgccat tttaacccct cgattcaact cattctttgc tttttattat acaggaaaac
    19621 agaaaagtta caaatccttg acaaagtaac taaaaggagt atacttccaa ctataaagtt
    19681 actaaaatta aaaaaagtaa ccattttgaa tttaaaggag cgaatagatt atgacaaata
    19741 aacgtgttgc atttatttta gggggttctg gcggtattgg taaggcagtc gtccaaaaat
    19801 tggtcgaaca aaattttgca gttgtggttc attattcggg taataaggct aaagccgagg
    19861 cgcttgttga aaacattgtg aagtctggtg gagaagcgat tagtgttggc ggcgatgttg
    19921 ctgacgaggc gcagatgact cgtgcatttg atttcattga aagccagttt ggtggaattg
    19981 atgttgtcgt taacacggca ggtattatga aattaagtcc gattgctact ttggatatgg
    20041 atgaatttga cctgattcag cgaaccaatg tccggggcac ttttgtcgtt tccaagcaag
    20101 ctgccctcag agttcgagat ggcggcgcga ttatcaattt ctctacttcg gtaacgcgaa
    20161 ccagttttcc gacttacggg gcctacgttg ctagtaaggc cggggttgag tcgctcacat
    20221 tgattctggc acgcgaactt cgtgggaaag atataaccgt taatgcagta gcacctggcc
    20281 cgaccgccac tccgttattt ttgactggaa aagacgataa aacaattgac aacttagcaa
    20341 aagccacacc tttagaacgc ctaggacaac ctgaagatat cgcagaaacc gtagcatttt
    20401 tagccggacc tgcacgctgg gtgaatggtc aagtcatttt caccaatgga ggattagctt
    20461 aattaaaaaa ggaggaaaac agagctatct ggttttcctc cttttatttt attggtcttt
    20521 tttaatcgct aaaacaatca atcccgatgc taataaagtt aacgccaaga acagaaaagc
    20581 cgattgataa gagttagtcg cgtttaccaa atcccctata atcatcggtg caaaaaagcc
    20641 acctaaaact cctcccgagt ttatagccgc gtattttgtt gcaatgtggc tctgctgaaa
    20701 caacttgtgc ggcaatccca ttagcgttgt aaaggccatg attaggaata tattacataa
    20761 acacaagcaa ataaccgata gcgctaattg ttcaaataaa tacaccccgt ataccgcgaa
    20821 cgccccaagc acacaaaatg cgaaaataat aatcggctct tttcctttga aaaaacgact
    20881 aatgaaatag ccaccgacaa ctcctgcaat taaaatacaa aggccagcta aagaactaat
    20941 atagctcact tcgctaatag aaatccctct aacctcattc aaataagaag caagccaact
    21001 tgttaaaccg tagttcgctg catttataaa aagcgctgat agcaaaagaa tccaaagctg
    21061 tttatctttc aaaagttctg agaaaggtac tttgattttt tctttttgag catttagatc
    21121 tattttcggc gctttaggta cgacaattaa aatcagaaag ccaatcaaaa tcaccgcaat
    21181 accaatccag taatatgtat tgcgccaacc cactgatagc aacagttgcg cgattaacaa
    21241 tggcccaata aatgccgcaa aaccagagga agcaagcatt gcggactgag caaaacctcg
    21301 cttgttcaac ggaatatgaa gtgaaatata attgctgaca gacgggggat aacctgcgtg
    21361 tccaagcgct ccggataaga aacgaataac aaccaaaaat aacaaggaat agccaaagcc
    21421 aaaaataaca agaaatagcc cgacaataat aattgatacc gcaagaactg gtcgtgcgcc
    21481 aatccgattg tttaaatacc ccattggaat ttgaaaaagt gtgtaaccaa gaaagaaggc
    21541 acttaaaatc aacccctttt gacttggatc aaatcctaaa tcctgagaaa cagtcacaag
    21601 cgaaattcca atagtatatt tatccacgta tacactggtg tagcctataa atagaacaag
    21661 taacaccatt aacgaatgct tttctccttt tacctgattc atttgaattc actccactct
    21721 tctatagtcc cgccaattgc aaaagagcat aaccagattc tttttctgac tatgctcttt
    21781 tcaaagctat tatccattca atttataata atctaaaacc acgtccgcaa ccgatttggc
    21841 agcaactaac aacgcatctt catctatatc aaattttgga tgatgattaa aataagcatt
    21901 cgaagtattt ttcggtttcg cgccaatata gaagaagact ccaggaattt tttgtaaata
    21961 ataagcaaaa tcctctgatc cggaaagcat gtcgtattca gaaatgcccg ttaagtactc
    22021 gccaacacct ttttgcaaac ttgcaactac ttgttctgtt acagctggat cgttgtaaag
    22081 tggtgggtag tcgttcgtgt acgttagttc caccgttaca ccaaacatcg cttccatacc
    22141 agcaacaata cggtggattt ctgcatccat tttatcacgg ttttcagtat tcatataacg
    22201 cacatcgcct tctagctcca ctgcatcttt aataacgtta aaactacctt taccatcgaa
    22261 agaaccaatc gttataacgc ccgtatcaaa tgggttcaaa cggcggctca ctactgtttg
    22321 aatggccgtc acaaaataag cacccgcgac aatcgcatca ttcgccatat gtggagacga
    22381 accatgcccg ccaacacctt gaattttaag tttaaaataa gtgcgaccag ccatcgcgaa
    22441 gccactatga taataaactt ggccgctttc accaaatgga aatacgtgaa taccaaaaat
    22501 ttgatccaca tcatctaaaa taccagattc gacaacgctt ttcgctccgc cgggtggtgt
    22561 ttcttcggca tgttgatgaa caatttttat cgttccaggg atgttttctt ttagttggat
    22621 taaacaatct gccaaaacga gtaaataagc agtatgtccg tcatgaccac atgcatgcat
    22681 tacgccaggt tttttagatt taaatggtaa ttccgtttgt tcttcgatgg gaagagcatc
    22741 aaaatcggca cgtaaagcaa tcgttttccc cggtttcccg cctttaatcg ttacaacaac
    22801 cgcatgacca tttcccactt cggttgccat ttccacgtct tttcctttat aaaaatcttg
    22861 gatgaacttt gcggtttctg cttcatggaa cgataattca ggatgttcgt gcaaatgacg
    22921 tctaatctga gtgatttcat cttttcgttc ctgaagcata ttcattaact tggtacgcat
    22981 gataaatcca acctcctatt cttttgcggc ttttaattcg agcgcttttt tcgcagacgg
    23041 tgttgttata gcaacggaaa taagtgacac gacacaaaaa ccgacgttag ttaaaagccc
    23101 caccattgcg gctaaatcaa tatttccaga aagtgcaatc acaccataaa tcgtagcaga
    23161 aattgccaca ccgaatgagc cacctaacga acttgccatt ttgtaaatac cagatgctac
    23221 tccgacttta tcttctggag cattagagat agctgtatct gtggaaggag ttgcatacat
    23281 accaagtcca atcccgaata aagcaaaacc gataaacaca agcactgtat aaagggttcc
    23341 cggaataaac gtcagcgcca ttaaagcaat accaacagcc gtaataccag agcctagaat
    23401 cattggttta cgcgcgccaa cacgttgaag aattttttca ccaatacgaa tcattccaag
    23461 cacacagaca aggtaaccga tagaaagtaa accggattgg aatgctgtaa aaccgcgacc
    23521 aatttgcaca taagtatttg caacaactag tgttccagca gctgcattta acaagaagtt
    23581 ggaaagtgtc gcaccagtat aagctttatt tttaaataac gagaaatcaa taaatccgtt
    23641 cgcttgtcgt aattccaccc ggaaaaataa tcccgcagaa ataaggaaaa caacgagcat
    23701 tgtaatagta attgggcttg tccagccaaa tgtggaacca cgagtgataa taagatttaa
    23761 gcaaaccatt gcgataacaa aaagaacaag accaaatgaa tcaaattttg cttttgtatt
    23821 ttgaacgact ttactttctg gagtaccttt aataagtagc attccaagca gtgcgaatac
    23881 gatggaaata atgaaaatcc agcgccagcc catgtatgtt gcgatagctc cacctgcgaa
    23941 tgaacaaata cctgatccac cccatgagcc aatcgaccag taactaagcg ctctttgtct
    24001 atcagcccct tcaaaataag ttttcattag ggcaagggtt gctggcataa tacaagcagc
    24061 tgaaagccct tgaataatac ggccgataat aagtaacgtc gccccttgag tgacaacaag
    24121 taacagtgaa ccgatgatac taagaataag tccgatataa gttaatttca cgcgaccaaa
    24181 tttgtcagcc ataccacctg ctacaacgat aaaaatacct gaaaatagcg cggttaaact
    24241 gatggcaata ctaagtaaat cagaggaaat tccaaggtca gattgcacgg ccggaacgat
    24301 attcaccatt gattgggcga aaagccaaaa cgtgataacc ccgaaaacaa tcccaacaat
    24361 aagtttattt gtacctttat acgctgttga agtcattagt tattctctcc ttttaagtaa
    24421 tctacaacac aagctcccat ggcttttgat gcaattaata atgaatcttc attgatgtca
    24481 aattttggat gatgatgcgg ataaaaatgc ccatctgccg gcatcgctcc cacatagaaa
    24541 aatgagctcg gacgttcttt tgcataataa gcaaagtctt ctgatggtgg ttgcggttca
    24601 cagcgcacaa catctgtaat ttctggaatt ttcgcccctt taatagattt aacaacaaaa
    24661 tcagtcaaag cttcgtcatt atttaaaaca ggataatcat ttttgtaatc aagttcacaa
    24721 gtaacgccaa acattgcctc tattccgcta acgatacggg taatttcttt ttgaataatg
    24781 ttgcgtgcct cttcagacat agagcgcaca tcgccttcaa gctcaaccgc atccttgatg
    24841 acattaaaac taccttttcc atcaaaagaa ccaatcgtaa ttgagccgac atcaaatggg
    24901 tttaaacggc gactaatcac cgtttgaaca gctactacaa attcacttgc tgcaacaata
    24961 gcatcattcg ctaaatgcgg agatgagcca tgtccacctt gaccttgtac cttaagttta
    25021 aaataagagc gaccagtttg aattgcaccc tcacggtaga aaacttcacc cgttttcatc
    25081 gtagacatca catgaatccc aaggacatta tcaacaccat ccagcgcccc gtcttgaatc
    25141 atttgaatcg cgccaccagg aggagtttct tccgcatgct gatgtaaaat aactattttc
    25201 ccggttaatt cttgtttcat ttcaataagt gtttcgccca aaataagcat gtaagctgta
    25261 tgtccatcgt gaccacaagc gtgcattaca ccagggtttt tagatgcaaa agctagacca
    25321 gtttcttccg ttatcggcag tgcatcaaaa tctgcacgaa tcgcaagtgt cttgcccggc
    25381 ttgcctgtat caatcgttac tacaacgcca ttcccaccaa catgcgtccg cacatcgcag
    25441 tccatttctt tataaaaatc cgcaatatac ttcgccgtat tttcctcttg aaaagaaagt
    25501 tcagggtgtt catgtaagta acgacgaatt tctatcatgc gatctcgttt ttcgtctagt
    25561 ttttgaaata acttctcttt cattgtccaa acctccattt ttaatacttc cgctggccag
    25621 aacttccgta ttttcactac aacttaatta taaaaaaaac caagcgaaaa gaagtttact
    25681 tttttgctta gttttagctt gaaattttct tcttttgtaa attactcaaa ccaatgtcaa
    25741 aaatccggtg ctgaagtcac aaaaaaagct caactgctag agttgaactt tttaaaccgt
    25801 acttctaaac tcataaaaat gaatcgcatt aatatctaaa taagcataaa acgaccaatc
    25861 ttccgtaatc gtttcatcac tcaccgtaag tgtaggctga gaggcatcca caatatagtc
    25921 caaaatctct ttatctagcc catacttact gttcagttgc caatacttcg aataaagtgc
    25981 cccattgtca cggtcgaatt gccatttaca gacttgataa tcacccgcgt aaagccctgt
    26041 aagtctaata tgcacttctt tttgttcttc cttaatgaac ctttcctcca cagaataacg
    26101 cggattaatc gtcgcacagt tcatcaaaat aagctgataa ccgtctgcgt gcttcgtcat
    26161 aatataatct tcacccttag caaccacaac acccttaagc cttctcaaaa acttcactgc
    26221 ataaaacgcc ggtcgtttac cattgaaaaa gtggaacatt tcaattccgt caagactaat
    26281 atttaatttg ctatcgtccc cttcatgaag ttccgtatta atccaaaagc ctaatgcgtc
    26341 tacttctggt accaaatcta gcatcgtttt caaaactaat gctcctctga aaaaagtccc
    26401 gtttgtgtat ctcgtattcc cagataacgt gttccagttt actaacatta gcggcttatt
    26461 gatatgatga tgtttcaaga aagcctttaa ttgaagcgtt tttgacaaac aataatcctc
    26521 tgaaatcgaa aacgacttca tatcctcttt cgaaaaatct accgcttcat tttgattcgc
    26581 attataggcg acaaagtcca ttttatccgc ttcttctaaa aaccacgtat gtcgttcagg
    26641 cactgcattt ttagacaatg aaaatgggac aaaatttccg acttggatag ctggaaaacg
    26701 cgattttata gtgtgatata ttttcaaata aagttttttc agttcttcct tatcagcata
    26761 tgtatttttc ggttcaaaaa acataaaatg ccattttgaa acaaattccc gcccaaaaac
    26821 ctgcatacaa tgctttaaaa agtgatccaa tcgttcaaaa acagccgcct catcgcctac
    26881 aatatcttga tactccaagc gaataaacaa ttgtaaattt tgctgtttta aaaaagtgag
    26941 cgctaaatcc gcattcgcat atggagaaga agttggcact aattcgtccg tttccgtttc
    27001 aggcaagaac gtcgaacctc taaacaaatg acgaatacca atataattaa tcccaatctc
    27061 atcacgcgtc gtaataatct gcttttggac attatcttta agcacttctt taagctcacc
    27121 aatcgtcaaa atattcatat tctcacttaa acaacgttcg gtcttttccg tgatatcaat
    27181 tttctttttc tcaaatggtg ctttatttaa ttccttaccc ggctccacat catgataaag
    27241 tcgtgacaat ttcactaaaa tttccggaga tggcacaatt tgttctatac tagcgcccag
    27301 ctcagatgtc ttattgtcta ttaacaaatt cgtttccaca tgatgttccg ctcggtattc
    27361 acttggcgtt agctcaaaat gaaacttaaa tacttctgaa aaatgctttt ggctcgaaaa
    27421 accatttttt aacgcaatct ctgtaatact ttccgccgaa tgtagtaaat cttgaatcgc
    27481 atgcttcaat cggacttctg tcaaatactg taaaaaacca agccccgtcg tctttttaaa
    27541 ataacgtgat aagtacgcct cacttaaaaa ctctttttgc gcaaactcac gaagcgacaa
    27601 ggcttcatca aaccgctctt ccacttctcg aataatgcgc gaaatccgtt tatcattgac
    27661 ttctttccta gcagaagatg gaattccttt tttcaaaaaa cgcgtaagta ataataaaat
    27721 ttggaacaac gccgattgcg cttctaattt attcgctcgt ttcttcgtcg ccgaagcaat
    27781 caaaagctca ctcaccgact tcctcaaaga cccaacaacc cgctctctcc ccgggtcact
    27841 ctccttcgag aaaaatttaa aagaatgctg aaaataatcc tcataataat gcgcaaaaaa
    27901 tgtatctgaa atcgttaaat taataaataa attatcttca tttccctcaa ttgtataaaa
    27961 ggtattgcga tcaagaacta aaacatcgcc ttcctgcaag taaaattttt gctcagaaac
    28021 cttgattgtt atttgtccag aaatagcaaa taccaattta gttccaagtg atatttccga
    28081 cgtcagctgc tttatatgtt gaataccaat cgtataatct tttaaatgag acactcgatt
    28141 caccccttcg tttaacttaa tcggacactt ttatattatc atagtcgtga aaattaatcg
    28201 ctatcagttt ttatgattgt tttagtcatt aaaccgacac aatcgagtca catatatccg
    28261 gaatttttgt acttttgcga gacaaaatga taaataaaac ggcgtataat aaatgattgt
    28321 agaaaacgaa taaggagtgc gccaaattga aaacttctaa aataataata gcttcattag
    28381 ttagtttaac cctggtttca aacccaattt taacattcgc agcaacgaat gatgtgattg
    28441 ataatacaac agaaatcact actgataaag aaacaagccc aactcaacca actattaaaa
    28501 acacactcaa agctggtcaa acacaaagtt ttaacgactg gtttcctgat gacaattttg
    28561 cttcagaggt agcagcagca tttgaaatgc aagcaactga cactatcagc gaagaacaac
    28621 ttgctactct aacaagccta gattgccaca attcttccat agccgatatg actggtattg
    28681 aaaaattaac tggtttaaca aaattaattt gcacgtataa taacattact actcttgatc
    28741 ttagccaaaa cactaattta acttatctgg catgtgattc aaataaactt acaaaccttg
    28801 atgtaacccc gcttacaaaa ttaacctact taaattgcga cacgaacaaa ctcacaaaga
    28861 tagatgtaag tcaaaatcca ttgttaactt atttaaactg cgcacgcaac accttaaccg
    28921 aaatagatgt cagccacaat acacaattaa ctgagctaga ctgccattta aataaaaaaa
    28981 tcaccaaatt agatgtgaca ccacaaactc aattaacaac cttagactgt agctttaata
    29041 aaataactgc attagatgta agtcaaaata aattactgaa ccgtctaaac tgcgacacta
    29101 ataatataac taaactggac ctcaaccaaa atattcagct aactttccta gattgctcca
    29161 gtaacaaatt aaccgaaata gatgtaaccc cgcttacaca gttaacatat tttgattgta
    29221 gcgtaaatcc tttaactgaa ttagatgtgt ctacgctttc aaaattaact acactacac
//
LOCUS       DASEAA010000018        28758 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.018, whole genome shotgun sequence.
ACCESSION   DASEAA010000018 DASEAA010000000
VERSION     DASEAA010000018.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 28758)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 28758)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..28758
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.018"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(74..1435)
                     /gene="rlmD"
                     /locus_tag="U0342_000667"
     CDS             complement(74..1435)
                     /gene="rlmD"
                     /locus_tag="U0342_000667"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465276.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM2422027.1"
                     /translation="MEASLLKKNQSIELTIEDLTHDGSGVGKIDGYPLFIPNTLPGEK
                     VTAKIIKLNKNYGFARMETIESVSADRVEPPCAVYSKCGGCSLQHLSYEGQLAFKRNQ
                     VEETMKRIGKLNVDVPETLGMENPWRYRNKSQVPVGFVNGKLTAGFYQKRSHAIIDMS
                     TCLIHNEQGDFAVQKTREILAKYGTEPYDEQTGKGDIRHIMTRFAHTTGQLMIVLVTT
                     KERMPFKEEIVRELVEQLELTSIVQNINPHKTNVIFGDRTKTLWGKDIIEDTIHGIRF
                     AISARSFYQVNPIQTEVLYQQAIDAAELTGEETVIDAYCGIGSISLCLAKKAKHVYGV
                     EIVDQAIQDARANAELNELANTTFETGKAEEVIPAWYKAGIVADVLVVDPPRKGCDEK
                     LLETILAMKPKKVVYVSCNPGTLARDMKILTDGGYVAKKVQPVDMFPMTTHIEAVTVL
                     HLN"
     gene            complement(1459..2214)
                     /locus_tag="U0342_000668"
     CDS             complement(1459..2214)
                     /locus_tag="U0342_000668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465277.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422028.1"
                     /translation="MTSGHQFKRFTMIIIVLIIAIAAAVFFFWQVDAEEQAPKVSKTE
                     LIESNKVWINNQMQIPIQDNIILSIPAANTNTTIATNGDLILETTNEEILNELASSDN
                     RYKGIKAYRLRIEAKKVSEYITNTKYRYPTTTIQKKFANYEITSGERSVQTEKTPVKI
                     EDTTNNNIKVSLKTSYSSDDAEVAAGIFNSQIPEETTITDNTKALTTNKNVTIYPKTF
                     IYDFTLQKNTMLVFKEQEEAVIKEPIGIEYIIK"
     gene            complement(2362..3294)
                     /locus_tag="U0342_000669"
     CDS             complement(2362..3294)
                     /locus_tag="U0342_000669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465278.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase"
                     /protein_id="HEM2422029.1"
                     /translation="MQKHARVIYNPTSGREIIKKNLADVLSILEQAGYVTSAHATTAE
                     PDDAKHAAEEAVRDRFDLVVAAGGDGTINEVINGIAEKEYRPKVGIIPTGTTNDFARA
                     LHVPRDVIKATKIIAAGQSVAMDIGKANETYFINIGGGGRLTELTYDVPSRLKTMLGQ
                     LAYYLKGIEMLPSLKATKVKVEYDQGVFEGEVMFFLLGLTNSIGGFEKIAPDAKLDDG
                     KFSLIIVKKVNLAEFIRLVTLALRGDHIKEPNVIYVKSEKVIVNSEDKMLINLDGELG
                     GETPMEFRNLRQHIEFFASVDDIPATDLFIKENS"
     gene            complement(3440..4870)
                     /gene="gatB"
                     /locus_tag="U0342_000670"
     CDS             complement(3440..4870)
                     /gene="gatB"
                     /locus_tag="U0342_000670"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatB"
                     /protein_id="HEM2422030.1"
                     /translation="MNFETVIGLEVHVELKTNSKIFSSAPAHFGAEPNTNTTVVDLGM
                     PGVLPVLNKRAVEFGMKAAMAINCEIAKHTKFDRKNYFYPDNPKAYQISQFDKPIGEH
                     GWIEIEVGGKKKKIGITRLHLEEDAGKNTHTSHGYSLVDINRQGTPLIEIVSEPDIRS
                     AEEAYAYLEKLKSIIQYTGVSDVKMEEGSMRCDANISIRPIGQEEFGVKTELKNLNSF
                     NNVRKGIEYEEKRQAEVLKSGGIIDQETRRFEEATGKTSLMRIKEGSDDYRYFPEPDL
                     VDLFIDDAWKERIRAEIPELPDKRQIRYINDLGLPAYDAMVLTLTKEMSDFFEATLAA
                     GADAKQASNWLMGEVSAYLNAEQKELHETGLTPENLAGMIKLIEAGTISSKIAKKVFR
                     ELAQNGGDAEQVVKDKGLVQISDEGALRTIISEILDNNEQSIVDFKNGKDRAVGFLVG
                     QVMKATKGQANPPMVNKLLLEEMNKR"
     gene            complement(4882..6333)
                     /gene="gatA"
                     /locus_tag="U0342_000671"
     CDS             complement(4882..6333)
                     /gene="gatA"
                     /locus_tag="U0342_000671"
                     /EC_number="6.3.5.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatA"
                     /protein_id="HEM2422031.1"
                     /translation="MGLFDFSVKELHDKLVKKEISPFDLVSESFNRIESVEDKVGSFI
                     TLNKEAAFGVAEELGDAGIDPNNMLSGLPIGIKDNIVTKNLRTTAASKILENFDPIYD
                     ATVVSKLKNAQTINIGKLNMDEFAMGSSTETSYFHKTHNPWDLSRVPGGSSGGSASAV
                     AAGEVLFSLGSDTGGSIRQPAAFCGVVGMKPTYGRVSRFGLIAFASSLDQIGPITKNV
                     EDNAYLLEAISGLDANDSTSINQPVERFSNSLTGDIKGLRIGVPKEYLGEGVDPGVKQ
                     AVLDALKTLEKLGATWDEVSLPHSEYGVASYYILASSEASSNLSRFDGVRYGYRSPNA
                     TTLEELYTKTRSEGFGDEVKRRIMLGTYALSSGYYDAYYKKAQQARTLIKQDFVNVFE
                     NYDVIIGPSSPTTAFKIDGMINDPITMYSNDILTVPINLAGVPAISVPCGFSDGLPVG
                     LQIIGNYFEESLLYKVAHAFEQETTFHKEKPNL"
     gene            complement(6357..6650)
                     /gene="gatC"
                     /locus_tag="U0342_000672"
     CDS             complement(6357..6650)
                     /gene="gatC"
                     /locus_tag="U0342_000672"
                     /EC_number="6.3.5.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase
                     subunit GatC"
                     /protein_id="HEM2422032.1"
                     /translation="MSNISKETVEKVANLAKLEVSETEATAFAGQLGKIIELVEQLNT
                     LDTTNVEPTSHAIDVSNVLREDVATKGLDRKEVLKNAPDEQDGMFKVPTIMEQ"
     gene            complement(6775..7890)
                     /locus_tag="U0342_000673"
     CDS             complement(6775..7890)
                     /locus_tag="U0342_000673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CamS family sex pheromone protein"
                     /protein_id="HEM2422033.1"
                     /translation="MKKIIIAALGLTLVLSGCAPKLDSNDKVVQKDDSKAETGIMTKN
                     QISSNYYKTVLPYKASKSRGLVVSNIYSRYDINELESGLMRVSQNKYSPDNYLFQEGQ
                     YLDKETLEKWLDRKSDKNPNGLNPASNGNGENRNPIYLAHILEQDYLKQTDKDTVALG
                     GISIALAMNSVDYYQKEKYGDTYEQPISNSELLAQGKEMSTTVLNRIRQTKGLENVPV
                     TIAIYKQGARDAVAPGNYIAYATANGDSLSNWKDIDEKNYVLPSTESAKDHKTDNDNF
                     LNFKKAIEDYYPNFTGVVGRGRYEDGQLAELNIDIPLQFYGEAEIIGFTQYVTDLVGQ
                     HIPKTADLQVNISTSDGPAALITRKANEDAATAHIYD"
     gene            complement(7887..9902)
                     /gene="ligA"
                     /locus_tag="U0342_000674"
     CDS             complement(7887..9902)
                     /gene="ligA"
                     /locus_tag="U0342_000674"
                     /EC_number="6.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent DNA ligase LigA"
                     /protein_id="HEM2422034.1"
                     /translation="MADKKRYEELINILDQYSYDYYVIDNPTVEDAEYDQKMQELLKI
                     EEAHPEWVTPESPSKRVGGEVLEGFKKVAHDTPMLSLANAFNQEDLADFDRRIRDKVG
                     DDIAYMCELKIDGLAVSLQYENGKYKQGATRGDGTIGEDITANLRTIRSIPMKLQKDY
                     SIEVRGEAFMPKRSFQKLNEIREEEGQMLFANPRNAAAGSLRQLDTKIAASRNLDIFL
                     YAVADFGEMGVETHSAGLDMLETLGLKVNKERRLCNSLEEVYAYIEEWTEKRAGLAYD
                     IDGIVLKLNNLEQQRQMGNTVKSPRWSIAYKFPAEEVPTKLLDIELNVGRTGVITPTA
                     VLEPVRVAGTTVSRASLHNEDLITEKDIRIGDTVLIKKAGDIIPEVIKSITEKRSGSE
                     EPFHMPKNCPACDSELVRLEEEVALRCINPKCPAQIKEGLIHFVSRNAMNIDGLGEKV
                     IIQLFSQHLIKDVADLFFLSKEKLLELERMGEKSVTNLLASIQASKQNSLEKLLFGLG
                     IRHVGAKAAKSLAIHFDTMDNLKVADKETLTSINDIGEKMADSIVTYFANEEVHDLLE
                     ELKRAGVNMTYTGPKLEDMSEEELVFAGKTVVLTGKLEKLTRNDAKALIESLGGNVSG
                     SVSKKTDVVVAGSDAGSKLAKAEELAIPIWSEEDLIEYLPDEGGLNE"
     gene            complement(9928..12123)
                     /gene="pcrA"
                     /locus_tag="U0342_000675"
     CDS             complement(9928..12123)
                     /gene="pcrA"
                     /locus_tag="U0342_000675"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA helicase PcrA"
                     /protein_id="HEM2422035.1"
                     /translation="MNAKELVDGLNPEQRRAVESTEGPLLIMAGAGSGKTRVLTHRIA
                     YLVRERGVNPYNILAITFTNKAAREMKSRIGNLMGGEAESIWISTFHSMCVRILRRDI
                     DRIGYERNFTILDGSDQLSVIKGILKEKNVDPKKFEPRGILASISNAKNELITASEYI
                     KEASGFYDKMVGEVYEKYEKKLKKNQALDFDDLIMVTIQLFERVPDVLEYYQRKFQYI
                     HVDEYQDTNHAQYLLVKQLASRFKNLCVVGDSDQSIYGWRGADISNIMSFEKDYPNAK
                     TILLEENYRSTKRILEAANRVIENNGNRKPKNLWTSNAEGKKIFYHKALTEKEEAAYV
                     VMKIQEEVNNSNRPLSDFAILYRTNAQSRVMEEYFMKSNMAYTMVGGTKFYDRKEIKD
                     ILAYLRLISNNEDDISLTRIVNVPKRGVGPGTLDKLNNVATTYDLSLFEVLNRIELAG
                     ISPKISKDLVAFHDLIRGFTQMQDFLSVTELVEEILEKTGYRAMLKNERTIEAQTRLE
                     NIDEFLSVTQNFEKENDDKTLIAFLTDLALVADVDKLEEDNEEQNGAVTLMTLHSAKG
                     LEFPVVFLVGMEEGIFPHSRAIYEEDEMEEERRLAYVGITRAEEELFLTSAYSRMLYG
                     RPSSNQESRFIGEIPRDLLELGNENKLKADKPYAKPRMPQKTTTAYKSSGAETLGWTV
                     GDKASHKKWGVGTVVSVKGEGSGMELDIAFPSPTGVKRLLAEFAPIEKV"
     gene            complement(12188..12865)
                     /locus_tag="U0342_000676"
     CDS             complement(12188..12865)
                     /locus_tag="U0342_000676"
                     /EC_number="2.5.1.n9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465285.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heptaprenylglyceryl phosphate synthase"
                     /protein_id="HEM2422036.1"
                     /translation="MKHLFKLDPAKNLPMNDLTKLVHSGTNGFIIGGTDNVQIEAVQK
                     LYELLGETDLPIFLEISNESMILPEADHFLIPVVLNTENSKWTHGLHQELIKEMGAFI
                     PWKRVTAEGYVILNKDAKVAHLTEAKTDLTDEDIVAYARLAENIFHLPIFYVEYSGMY
                     GDPEVVRKASAALSNTKFWYGGGIRSKEQAAEMVKYADTIIVGNIIYEDLEKALETAT
                     IFRKKTV"
     gene            13072..14427
                     /locus_tag="U0342_000677"
     CDS             13072..14427
                     /locus_tag="U0342_000677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium-dependent transporter"
                     /protein_id="HEM2422037.1"
                     /translation="MQENREEWGSKVGFILASAGSAIGIGAIWKLPYVAATAGGGAFF
                     LLFLVLTLLVVMPLLIAEFVIGRGSGGDAVQAYKTLAPGTKWNLLGKLGVVGASILFS
                     FYSVVGGWIITYLIKTLAGGIAGENQASLLHDFQVTTANPWISVGATILFILLNVIVI
                     SRGVVSGIEKMSKFMMPALFILFIVLIIRSLTLPGAMEGVAFFLRPDFSHFTAQTVLI
                     TLGQAFFSLSVGISVMVTYSSYLNRSTSLPQSAISVSLMNVFVSLLAGLAIFPAAFSF
                     NITPDAGPGLLFVILPSIFNQMPFGMLFFIIFLILFLFAALTSSFSMLEATVAPLMNA
                     GVNRKKASLWMGLVIVLMAIPSALSFGVWSDVQIFGLSIFDAADYLVSNIVLPVGALF
                     IAIFVGYRLPRELLLKEFTTSSHFGKKVFILWLFLIKYIAPIAIIFVFLSATGLIDFL
                     F"
     gene            complement(14470..14724)
                     /locus_tag="U0342_000678"
     CDS             complement(14470..14724)
                     /locus_tag="U0342_000678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422038.1"
                     /translation="MKKFNSKTYQIVIISILALAVIYFVINMIATGTGLDFSLLWHWV
                     FIICFIFTTLANVREKRAIGTAIGLSGILICVTSIVLMAI"
     gene            complement(14741..15037)
                     /locus_tag="U0342_000679"
     CDS             complement(14741..15037)
                     /locus_tag="U0342_000679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465288.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2422039.1"
                     /translation="MQIEKLRGQGLDEFFQGILTLENLEECYAFFDDVCTVNEIQSMA
                     QRFQVAKMLHDGKTYNVIESETGASTATISRVKRSLHYGNDMYDVVFSRMTKPE"
     gene            complement(15176..16438)
                     /gene="purD"
                     /locus_tag="U0342_000680"
     CDS             complement(15176..16438)
                     /gene="purD"
                     /locus_tag="U0342_000680"
                     /EC_number="6.3.4.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylamine--glycine ligase"
                     /protein_id="HEM2422040.1"
                     /translation="MNLLVVGSGGREHAISKKLLESNNVENVYCAPGNDGMRLDNIQL
                     VAISETDKAGLIDFAKKAEIAFVIVGPEVPLLEGVVDALEEAGIKAFGPKANAALIEG
                     SKDFAKQFMEKYAIPTAASKTFTDYAEAKAYLDERGVPIVIKADGLAAGKGVTVALEM
                     EEAVLALKDMMLEEKFGDASLKVVIEDFLAGEEFSLMAFVNGEEVYPMAIAQDHKRAY
                     EGDKGPNTGGMGAYSPVPHISETVVDEAVEKILLPAAKGMVKEGRYFRGILYAGLILT
                     AEGPKVIEFNARFGDPETQVVLPRLESDFAALIDALLHNEKPDVRFKKSGITLGVVLA
                     SAGYPEHYEKGNKLTGLNDVAEDVAIYHAGTKQDENDDFISDGGRVLLLAKEAETMTD
                     ARTLLYPEMQKLDNPNFFYRIDIGTKAE"
     gene            complement(16463..17992)
                     /gene="purH"
                     /locus_tag="U0342_000681"
     CDS             complement(16463..17992)
                     /gene="purH"
                     /locus_tag="U0342_000681"
                     /EC_number="2.1.2.3"
                     /EC_number="3.5.4.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional
                     phosphoribosylaminoimidazolecarboxamide
                     formyltransferase/IMP cyclohydrolase"
                     /protein_id="HEM2422041.1"
                     /translation="MKRALISVSDKNGIVPFAEKLVELGVEIISTGGTKAAFEQAGVP
                     VTGIEEVTEFPEMLDGRVKTLHPAIHGGLLARRDTAEHMEAIAAHDIKPIDLVVVNLY
                     PFQETIQKSGVTLEEAIENIDIGGPSMLRSAAKNYAAVTVVVDTADYDTVLTELEEHG
                     ATTFETRQRLAAKVFRHTAAYDALIAEYLTNITGETFPEKVTLTYNRKQVLRYGENPH
                     QDAAFYTEPGTVENSISSAKQLHGKELSYNNIRDADAALKIASEFTEPVAVAVKHMNP
                     CGVGVGENIEEAYLKAYEADETSIFGGIVALNKEVDAKTAEHMSKIFLEIIIAPSFSE
                     EAFAILAKKKNIRLLTVPFAGSVKGFEKTSVNGGLLIQASDSVIEDTASYEVVTEKQP
                     TEAEMKALIAQWKIVKHVKSNAIVVGSDKQTLGIGAGQMNRIGSALIALKQAGEKAKG
                     AVLASDAFFPMDDTVEAAAKAGITAIIQPGGSIKDKESIEMANKYGISMVLTHVRHFK
                     H"
     gene            complement(17998..18564)
                     /gene="purN"
                     /locus_tag="U0342_000682"
     CDS             complement(17998..18564)
                     /gene="purN"
                     /locus_tag="U0342_000682"
                     /EC_number="2.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylglycinamide formyltransferase"
                     /protein_id="HEM2422042.1"
                     /translation="MNIAIFASGNGSNFQALVDDAFIKPHVKLLVCDKPNAYVLERAN
                     THQIPVFLFEAKNYPDKEAFETEILLELRGLEIDLLVLAGYMRLIGPTLLAEFPEQIV
                     NLHPSLLPEFKGKDAIGQAIQANVSETGVTAHFVDAGMDTGPIIDQVKVPIEHAETVD
                     TLAGKIHQVEHIFYPKVIRGLIQNGGND"
     gene            complement(18561..19610)
                     /locus_tag="U0342_000683"
     CDS             complement(18561..19610)
                     /locus_tag="U0342_000683"
                     /EC_number="6.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine cyclo-ligase"
                     /protein_id="HEM2422043.1"
                     /translation="MAENAYSKAGVDVEAGYQVVERIKKHVARTERLGAMGALGSFGG
                     MFDLSSLHLKEPVLVSGTDGVGTKLLLAIEADKHDTIGIDCVAMCVNDILAQGAEPLF
                     FLDYIATGKTDPVKMEQIVKGVADGCEQAGAALIGGETAEMPDMYGAEDYDLAGFTVG
                     AVEKQKLITEGAVKEGDTLIGIPSSGIHSNGYSLVRKIFFKDNELTLDAEISELDVPL
                     VEELLKPTRIYVKPVLEVLKEVDVHGITHVTGGGFVENLPRMLTNDLAVKVELGSWPV
                     LPIFDVMKKYGQLSELEMYEIFNMGIGMVLAVAKADVERTLEVLVQNGEAAYVIGEVT
                     TRENDAVIFTGGTKG"
     gene            complement(19629..21056)
                     /gene="purF"
                     /locus_tag="U0342_000684"
     CDS             complement(19629..21056)
                     /gene="purF"
                     /locus_tag="U0342_000684"
                     /EC_number="2.4.2.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidophosphoribosyltransferase"
                     /protein_id="HEM2422044.1"
                     /translation="MLAEVKGLNEECGIFGIWDHPNAAEITYYGLHSLQHRGQEGAGI
                     VSTDGETLKGHRNLGLLADVFKHGELDDLKGKAAIGHVRYATAGQKNLGNVQPFLFHF
                     HSSSLALAHNGNLVNAKSLRRELEEEGAIFQTSSDTEVLAHLIKRSHTGDFVEDLKVA
                     LNKVKGGFAYMLLTEDTMYAALDPNGFRPLSIGRIGDSYVVASETCAFETVGAEFVRD
                     VEPGELIIINDDGLRIEKFTENVTHSICSMEYIYFARPDSNIAGINVHSARKRSGKRL
                     AKEAFIDADVVTGVPDSSISAAIGYAEEAGLPYELGLIKNRYVARTFIQPSQELREQG
                     VRMKLSAVRGVVEGKRVVMIDDSIVRGTTSKRIVQLLREAGAAEVHVRIASPPLAYPC
                     FYGIDIQTRNELIASNYSVDEICRIIGADSLEYLSEEGLVDSIGRPYPNEPYGGLCMA
                     YFNGDYPTPLYDYEAEYLASLEAEK"
     gene            complement(21041..23260)
                     /gene="purL"
                     /locus_tag="U0342_000685"
     CDS             complement(21041..23260)
                     /gene="purL"
                     /locus_tag="U0342_000685"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurL"
                     /protein_id="HEM2422045.1"
                     /translation="MPNMEPTTKEIKEQKIYQEMGLTDSEYELVCSILGREPNYTETG
                     LFSVMWSEHCSYKNSKPVLRKFPTEGKQVLQGPGEGAGIVDIGDGLGVAFKVESHNHP
                     SYVEPYQGAATGVGGIIRDVFSMGARPIAMLNSLRFGELDTPHAKYLVSEVVAGIAGY
                     GNSIGIPTVGGEIQFDPCYTKNPLVNAMCVGLIEAKDIQKGQAKGIGNPVMYVGAKTG
                     RDGIHGATFASVEFSEEGEQQRSAVQVGDPFMEKLLLEACLDVIRDHSDILVGIQDMG
                     AAGLVSSSSEMASKAGAGLELIMDDVPQRELNMTPYEMLLSESQERMLLCVKKGHVEE
                     IQALFERYGLEAVVIGQVTDDKMYKIIHHGEVVANVPVDALAEDAPVYHKPSKEPARY
                     QAFQEEESFVPVMEDVVGVWKELLAQPTIASKRHIYEQYDYQVRTDTAVVPGSDAAIV
                     RVRGTEKAIAMTTDCNSRYLYLDPEVGGAIAVAEAARNIVCSGGKPLAITDGLNFGNP
                     EKPEIFWEIEKAADGISAACLELDTPVISGNVSLYNETDGTGIYPTPVIGMVGLVEDL
                     AHITTQDFKNSGDVIFLIGETKAEYSGSELQKLQQGKISGRAPELDLTTEKKYQQLLL
                     TAIQEGLVASSHDLAEGGFGVALAEATFKAGLGADVEVPFELNQLFSESQSRFLVSVK
                     PENEAAFAQLMELEKVYRLGVVTEDDTIRVKHKENQVTAKTTELRSIWEGAIPCLLK"
     gene            complement(23253..23936)
                     /gene="purQ"
                     /locus_tag="U0342_000686"
     CDS             complement(23253..23936)
                     /gene="purQ"
                     /locus_tag="U0342_000686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurQ"
                     /protein_id="HEM2422046.1"
                     /translation="MKFAVIQFPGSNCDLDMLHAIRDSLGEEAEYVWHAETSLAGFDA
                     VLLPGGFSYGDYLRTGAIAKFSSIMPEVLRFAEMGKPVLGVCNGFQILTEIGLLPGAL
                     IRNNNLHFICKTVPLRVANASTMFTGLYKEGEIIQVPVAHGEGNYYCDDETLLKLKDN
                     NQIVFTYDSVNPNGSRADIAGIVNERGNVLGMMPHPERAVEEIIGGTDGLRLFESVVK
                     AWKEEQVNA"
     gene            complement(23940..24185)
                     /gene="purS"
                     /locus_tag="U0342_000687"
     CDS             complement(23940..24185)
                     /gene="purS"
                     /locus_tag="U0342_000687"
                     /EC_number="6.3.5.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylformylglycinamidine synthase
                     subunit PurS"
                     /protein_id="HEM2422047.1"
                     /translation="MYNVKVYVTLKKSVLDPQGVAVKDAAKSMGYEEVEDVRIGKFME
                     LKVVKSDRDIHEVLNEMCDKLLTNPVMEDYRYEIEEA"
     gene            complement(24197..24910)
                     /locus_tag="U0342_000688"
     CDS             complement(24197..24910)
                     /locus_tag="U0342_000688"
                     /EC_number="6.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylaminoimidazolesuccinocarboxamide
                     synthase"
                     /protein_id="HEM2422048.1"
                     /translation="MTNELVYEGKAKRLFKTEEAGVLRVAYKDDATALNGVRKESFAG
                     KGELNNQITSLIFSHLAGAGIESHFIRAISETEQLVKEVSIIPLEVVVRNVMAGSLAK
                     RLGKEEGELIPNAIVEFYYKDDALDDPFINDDHVLYLELATTSEMDIIRQAARSINKV
                     LQELFNQMNITLIDFKLEFGRDATGNILLADEISPDTCRLWDKETNQKLDKDVFRRNI
                     GNLTDVYTEVLNRLKQVQN"
     gene            complement(24991..26283)
                     /gene="purB"
                     /locus_tag="U0342_000689"
     CDS             complement(24991..26283)
                     /gene="purB"
                     /locus_tag="U0342_000689"
                     /EC_number="4.3.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate lyase"
                     /protein_id="HEM2422049.1"
                     /translation="MLERYTRKEMGNIWTEQNRYQAWLEVEILACEAWAELGDIPKED
                     VAKIRANAKFDVDRIHEIELETRHDVVAFTRSVSESLGAERKWVHYGLTSTDVVDTAN
                     SYLLKQANEILRKDLENFIAIIGEKAKEHKYTVTMGRTHGVHAEPTTFGLKLALWYEE
                     MKRNLERFNFAADGVEFGKISGAVGTYANIDPFVEAYVCEKLGTTPAPISTQTLQRDR
                     HAEYLATLALIATSVEKFAVEVRALQKSEVREVEEFFAKGQKGSSAMPHKRNPIGSEN
                     VTGLARVIRGHMVTAYENVPLWHERDISHSSAERIILPDSTILLDYILNRFGNIVKNL
                     TVFPENMKRNMDRTLGLIYSQRVLLALIDKGLAREAAYDVVQPRAMEAWEKQVPFREL
                     VEQDATIIENLSAEEIADCFDYNYHLKNVDLIFDRLGL"
     gene            complement(26302..27426)
                     /gene="purK"
                     /locus_tag="U0342_000690"
     CDS             complement(26302..27426)
                     /gene="purK"
                     /locus_tag="U0342_000690"
                     /EC_number="6.3.4.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide
                     synthase"
                     /protein_id="HEM2422050.1"
                     /translation="MDKKFLLTNSTIGIIGGGQLGRMLALAAKAMGYRIIVLDPTADC
                     PAAQVSDEQIIADYDDKVALRELSEKADVVTYEFENIDYDALKMTQNLVSVPQGSELL
                     SITQDRILEKAYLESANINIAPYAVIVEQDEIENEIKSIGYPAVLKTAQGGYDGKGQV
                     VIHDARDIETAARLLRYGSCVLEAWIPFEKEISVVVARNLEGQIETFPVAENVHVNNI
                     LHTTTAPADVADDVHEEAEEIARKLADVLQLCGVLAVEMFVTKSGAIYVNELAPRPHN
                     SGHFTIEACSISQFTQHIRAIVGLPLVKPELLKPALMINILGQHVDAVNKQMVNYPHW
                     FVHYYGKKEAKINRKMGHVTVLADEPKAVIQDLEETQIWK"
     gene            complement(27419..27907)
                     /gene="purE"
                     /locus_tag="U0342_000691"
     CDS             complement(27419..27907)
                     /gene="purE"
                     /locus_tag="U0342_000691"
                     /EC_number="4.1.1.21"
                     /EC_number="5.4.99.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-(carboxyamino)imidazole ribonucleotide mutase"
                     /protein_id="HEM2422051.1"
                     /translation="MPAVIGVIMGSTSDWDTMKKACDVLDELEIAYEKKVVSAHRTPD
                     LMFQYAEQARERGLKIIIAGAGGAAHLPGMIAAKTTLPVIGVPIKSKALNGMDSLLSI
                     VQMPGGVPVATVAIGESGAVNAGLLAAQILSITDDAITNRLQKRRATLEETVLESSDY
                     LG"
     gene            complement(28113..28637)
                     /locus_tag="U0342_000692"
     CDS             complement(28113..28637)
                     /locus_tag="U0342_000692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2179 domain-containing protein"
                     /protein_id="HEM2422052.1"
                     /translation="MDNGIFIVATIFIVNILYVTIYTVRLLLTMKGYRYLAALSSVFE
                     MIIYVVALSLVLDNLNNIANVLAYAIGFGVGIIVGMKIEERIALGYITVNVITKEYNL
                     DLPNQIRDLGYGVTSWLASGRDGERMMLEILTQRKNERKLYKHIIEIDNGAFIVSSEP
                     KQIHGGFWVKQVRK"
BASE COUNT         7994 a         6400 c         4814 g         9550 t
ORIGIN      
        1 ttaatttatt agtcaaccac acactcgaaa agcaaaaacc gccatttatc ccattatggc
       61 ggtttttgta tacttaattt aaatgtagaa cagtcacagc ttctatatgt gttgtcattg
      121 gaaacatatc tacaggctga acttttttcg ctacatagcc gccatccgtt aagattttca
      181 tatcacgggc caatgtccct ggattacaag aaacatatac tacttttttt ggtttcattg
      241 ctaaaattgt ttccagtaat ttttcatcgc acccttttcg tggtggatcg acaactaaga
      301 cgtctgctac aattccagct ttgtaccacg ccggaataac ctcttctgct ttccctgtct
      361 caaaagtagt attcgctaat tcattgagtt ctgcatttgc acgagcatct tgtatcgctt
      421 gatccacaat ttctaccccg tagacatgct tggctttttt cgcgagacaa agagaaatag
      481 aaccaatgcc gcaataggcg tcaatcactg tttcttctcc tgttaactca gccgcatcga
      541 ttgcttgttg atacaaaact tctgtttgga ttgggtttac ttgataaaat gaacgagccg
      601 aaattgcaaa tcgaatacca tgaatcgtat cctcaatgat atcttttccc caaagtgttt
      661 tcgtacgatc tccaaaaatc acatttgttt tatgtgggtt aatattttga acgatagaag
      721 ttagttcaag ttgttcgacc aattcccgta cgatttcttc tttaaatggc atacgttctt
      781 ttgttgttac aaggacaatc attaactgtc cagttgtatg cgcaaatctt gtcataatat
      841 ggcggatatc gccttttcct gtttgttcat catacggttc tgttccgtat ttagctagga
      901 tttcacgtgt tttttgaaca gcaaaatcgc cttgctcatt gtgaattaaa caagtggaca
      961 tatcgataat ggcatggctt cttttttggt aaaaacctgc tgttaactta ccattaacaa
     1021 atcctactgg tacttgtgat ttattccggt agcgccacgg gttttccatg cctaacgttt
     1081 ctggaacatc tacattaagt ttcccaattc gcttcatcgt ttcttccact tgatttcgct
     1141 taaacgcaag ctgaccctcg tagcttaagt gttgcaagct acaaccgcca catttggaat
     1201 aaaccgcaca tggaggttct acgcggtctg cactaaccga ttcaatagtc tccatccgag
     1261 caaagccgta atttttattg agctttatta ttttagctgt cactttttcg ccaggtaacg
     1321 tatttggaat gaaaagtggg tatccgtcaa ttttgccaac cccactgccg tcatgcgtta
     1381 aatcttcaat agtaagttca atggattggt tcttttttaa aagggatgct tccaaagtcc
     1441 cttgcccctc tctttgcttt acttaataat atattcgatg ccgattggct ctttaattac
     1501 tgcttcttct tgctctttaa aaacaagcat ggtatttttc tgtaacgtaa aatcataaat
     1561 aaatgttttt ggatagatag tgacattttt attcgtagtc aacgcttttg tgttatctgt
     1621 aatagtcgtt tcttctggaa tctggctatt aaaaatacca gctgcgactt cagcatcatc
     1681 acttgaataa cttgtcttta gagatacttt aatattattg tttgttgtgt cttctatttt
     1741 tacaggtgtt ttttctgttt gtacagaacg ttcaccactt gtaatttcat agtttgcgaa
     1801 ttttttctgg atagttgttg ttgggtaacg atattttgta ttagtaatat actcagaaac
     1861 tttcttcgct tcaatacgaa gtcgatatgc tttgatacct ttataacgat tatcggaaga
     1921 agctaattca tttaaaattt cttcattagt tgtctctaaa atcaaatccc catttgttgc
     1981 tatcgttgtg tttgtatttg ctgcagggat agataaaata atattatctt gtattggaat
     2041 ttgcatttgg ttgtttatcc atactttatt actttcaatt agctctgttt tacttacttt
     2101 tggagcctgt tcttctgcat ccacttgcca aaagaaaaaa acagccgctg cgatagcaat
     2161 gataagaacg attattatca tcgtgaacct tttaaattga tgtccacttg tcatatcgca
     2221 ttcacctcat ttcttgtcag aatacctatt atacttgttt tgctcaaata agacaaattt
     2281 ctaacaataa ttacatcctt tttactatgt tgcaattagg acgtttaggc taaagaaaaa
     2341 aactaccaaa ctgggcagtt tttagctatt ttcttttatg aataaatcag ttgcggggat
     2401 gtcatctaca cttgcgaaaa attcgatatg ttgtcttaaa ttgcggaatt ccattggcgt
     2461 ttccccacca agctccccgt caaggttaat taacatctta tcttctgagt taacaatcac
     2521 tttttcggat tttacataaa taacattagg ttctttaata tgatctcctc gaagcgccag
     2581 tgtgactaaa cggataaatt cggctaaatt tacttttttc acgataataa gtgaaaattt
     2641 accgtcgtct aacttggcat ctggggcgat tttttcaaag ccaccaatgg aattagttaa
     2701 tcctaatagg aaaaacatca cttccccttc aaatacgcct tgatcatatt ctacttttac
     2761 tttggttgct tttaaggatg gtaacatttc gatacctttt aaataataag caagttgacc
     2821 gagcattgtt tttagacggc taggaacatc gtaagtgagt tctgttaaac gacctccgcc
     2881 acctatatta ataaaatatg tttcatttgc tttacctata tccattgcta cactttgacc
     2941 agctgctata atcttcgttg ctttaatcac gtctctaggc acatgtaagg ctcttgcaaa
     3001 atcattggtt gtcccggttg gtataatccc tactttgggg cgatattctt tttcagcaat
     3061 accgttaata acttcattaa tggttccatc tccgccagct gctacaacta aatcgaatcg
     3121 atctcttaca gcttcttccg cagcatgttt ggcatcatct ggttctgcag ttgttgcgtg
     3181 cgcagatgtt acatagcctg cttgctctaa tatcgaaagg acatctgcaa gatttttctt
     3241 gatgatttct cttccagatg tgggattata aataactcga gcgtgttttt gcattatgtt
     3301 cgtcctctcc ttcactcaaa cagcgttgtt caaaagaaaa gcgcgttttg acacatgata
     3361 gtaatattat agcaaattta actataaatt cctaataaat ataaaagcag cgaggcaaaa
     3421 tacctcactg ctacattgtt taacgtttgt tcatttcttc tagtaataat ttattaacca
     3481 ttggtgggtt tgcttgccct ttggttgctt tcattacttg gccaactaag aatccaaccg
     3541 cacgatcctt accatttttg aagtcgacaa tagattgctc attgttatct agaatttcgc
     3601 taatgatagt gcgtaaagct ccttcatcgg aaatttggac aagtcctttg tcttttacta
     3661 cttgctctgc atcgccacca ttttgcgcta attcgcggaa aactttttta gcgattttag
     3721 aagaaatagt accagcttcg attaatttaa tcatgccagc aagattttca ggagttagtc
     3781 ctgtttcatg aagttctttt tgttctgcgt ttaagtaggc agaaacttcg cccattagcc
     3841 agtttgatgc ttgtttcgca tctgctccag ctgcaagagt tgcttcaaaa aagtcagaca
     3901 tttcttttgt aagcgtgaga accattgcat catatgctgg caaaccaaga tcgttaatgt
     3961 aacgaatttg acgtttgtct ggaagttcag gaatttctgc acgaatacgt tctttccaag
     4021 cgtcatcaat aaataaatct actaaatctg gttctgggaa ataacgataa tcgtcggatc
     4081 cttctttaat tcgcatcaaa gaggtttttc cagttgcttc ttcaaaacga cgagtttctt
     4141 gatcgataat cccgccagac ttaagcactt cagcttggcg tttttcttca tattcgatac
     4201 ctttacgtac gttgttgaag gagtttaggt ttttaagttc tgtttttacg ccaaattctt
     4261 cttggccgat tggtcggata gaaatattgg cgtcacagcg cattgaacct tcttccattt
     4321 tcacatcgga tacgccagtg tattgaatga tagattttaa tttttctaag taggcataag
     4381 cttcttctgc agaacgaatg tctggttctg aaacgatttc gataagtggt gttccttgac
     4441 ggttaatatc cactaacgaa taaccatgag aagtatgggt atttttccca gcatcttctt
     4501 ctaaatgaag acgagtgatg ccaatttttt tctttttacc gccaacttcg atttcaatcc
     4561 agccatgttc gccaattggt ttatcgaatt gagaaatttg gtatgctttc ggattatctg
     4621 gataaaaata gtttttacgg tcgaattttg tatgtttagc aatttcacag ttaatcgcca
     4681 tagccgcttt cataccaaat tccactgcac gtttatttaa aactggtaaa acacctggca
     4741 tacctaagtc taccacggtt gtatttgtat ttggttctgc tccaaaatga gctggcgcag
     4801 aagaaaatat ttttgaattg gtttttaact ctacgtgaac ctcaagtcca ataactgttt
     4861 caaaattcat tgctacgcct cctataagtt tggtttttct ttatggaatg ttgtttcttg
     4921 ttcaaaagca tgcgctactt tgtaaagtaa ggattcttca aagtagttac cgataatttg
     4981 caagccaact ggtaaaccat ccgagaatcc acaaggaaca gaaatagctg gtacgcctgc
     5041 taagttaatt ggaacagtca aaatatcatt ggaatacatt gtaattggat cattaatcat
     5101 tccgtcaatt ttaaatgctg ttgtcgggga actaggtccg ataataacat catagttttc
     5161 aaatacatta acaaagtctt gcttaattaa cgtacgcgct tgttgcgctt ttttgtagta
     5221 agcatcgtaa taaccagagc ttaacgcata tgttccaagc ataatacgac gttttacttc
     5281 atcgccaaag ccttcagaac gagtttttgt ataaagttct tctaaagtag ttgcgtttgg
     5341 agaacggtat ccgtaacgaa cgccgtcaaa acgagataga ttagaagaag cttcactaga
     5401 tgctaaaatg taataacttg ctacaccgta ttcagaatga ggtaaagaaa cttcatccca
     5461 agtagcgccc agtttttcga gtgttttaag cgcatctaat acagcttgtt ttacgccagg
     5521 atcaacgcct tcgccaagat attcttttgg aacaccgatg cgtaagcctt taatgtctcc
     5581 tgttaagcta tttgagaagc gttcaactgg ttggttaatc gatgtagaat cattcgcatc
     5641 taaaccagaa atagcttcta ataaataagc gttgtcttct acattttttg taattgggcc
     5701 gatttggtct aaagaagacg caaaggcaat taaaccaaaa cgagatacac ggccatatgt
     5761 aggtttcatt ccgactaccc cacaaaaagc tgctggttgg cgaatcgatc caccagtgtc
     5821 actaccaagc gagaataaaa cttcgcctgc tgcaactgcg gatgcactac cacctgaaga
     5881 accaccagga actcttgata aatcccatgg gttatgtgtt ttgtggaaat acgatgtttc
     5941 tgtcgaagat cccatcgcaa attcatccat gtttaatttt ccgatattaa ttgtttgcgc
     6001 attttttaat ttagaaacga cggtcgcatc ataaattgga tcgaagtttt ctaaaatttt
     6061 acttgctgct gttgtacgta agttttttgt cacgatatta tctttaatcc caattggaag
     6121 accagaaagc atgttgtttg gatctatgcc cgcatctcca agttcttctg ctacaccaaa
     6181 tgctgcctct ttatttaaag taataaaaga accaactttg tcctctacag attcaattcg
     6241 gttgaaagat tctgatacta aatcgaatgg tgaaatctct tttttaacta atttatcatg
     6301 tagttctttt actgaaaaat caaataaacc caaaatattt tccctcctta gcctatttat
     6361 tgttccataa ttgtcggtac tttgaacatg ccatcttgtt catcaggcgc attttttagt
     6421 acttctttgc gatccaaccc ttttgttgcc acatcttcac gtaatacgtt tgatacgtcg
     6481 attgcatggc tggtaggttc tacattcgtt gtatctaatg tatttaattg ctctactagc
     6541 tcaataattt taccaagctg accagcgaag gctgttgctt ctgtttctga tacttctagt
     6601 ttggcaagat ttgctacttt ttctactgtt tcttttgata tatttgacaa aatgccatcc
     6661 tcctttttag tggtacttac tacgcggtag tgcttcccgc ctgttaaaaa tgggaagaac
     6721 tgtcctctcc tgcataatta tacaacagga aagaacaatt cgcattgttt tttattaatc
     6781 gtaaatgtga gcagttgctg catcttcatt tgcttttctt gtaatcaatg cagctggacc
     6841 atcagatgta gaaatattga cttgcaaatc agctgtcttc ggaatatgtt gtccgactaa
     6901 atccgtcaca tactgtgtaa agccgataat ctctgcttca ccataaaatt gtaacggaat
     6961 atcaatgttt aattctgcta gttgaccgtc ttcatatcta ccacgaccaa cgacacctgt
     7021 aaagtttgga taatagtctt caattgcttt tttgaaattc aagaaattgt cattatctgt
     7081 tttgtgatct ttagcagatt cagttgatgg taaaacataa tttttttcat ctatatcttt
     7141 ccaattagaa agactgtccc catttgcagt tgcataagca atgtaatttc ctggagctac
     7201 cgcatcacga gctccttgtt tgtaaatggc aatcgttaca ggaacatttt ctaaaccttt
     7261 tgtttggcga attcgattta acacagtggt agacatttct ttcccttgtg ctaataattc
     7321 actattacta attggttgtt cataggtgtc tccgtatttt tctttttggt aataatcgac
     7381 cgaattcatc gcaagggcaa tagaaatccc accaagagca accgtatctt tgtccgtttg
     7441 ttttaaataa tcttgttcta aaatatgtgc tagatagatt ggattacgat tctcaccgtt
     7501 accattactg gctgggttta aaccattcgg atttttatcg ctttttctat ctaaccattt
     7561 ttctaacgtt tctttatcca aatattgccc ttcttggaaa agataattat ctggggagta
     7621 tttattttgc gaaacacgca ttaaaccaga ttctaattcg ttaatatcat atcgtgaata
     7681 aatattcgat acgacaagtc cacgggattt gcttgctttg tatggtagta cggttttgta
     7741 ataattggat gagatttgat tttttgtcat gatgcccgtc tctgcttttg aatcatcttt
     7801 ttgtaccact ttatcatttg agtcaagttt tggggcacag ccagagagca caagcgttaa
     7861 gccgagcgct gctattatga tttttttcat tcgtttaatc caccttcgtc tggtaagtac
     7921 tctattaagt cttcttctga ccaaatagga atggctagtt cttccgcttt ggctaattta
     7981 gaaccagcat cactgccagc tacaacaaca tccgttttct tactgacgct tccagaaaca
     8041 tttcctccga gggattcgat taatgctttt gcatcattcc gcgttaactt ttctagtttc
     8101 ccagttaaga caacggtttt acctgcgaaa acaagttctt cctcggacat atcttctagt
     8161 tttggccctg tataggtcat attgacgcca gcccttttta gttcttctaa taaatcatgt
     8221 acttcttcat tcgcgaaata agtgacaata ctgtctgcca ttttttcacc aatgtcgtta
     8281 atacttgtca gtgtttcttt gtctgctact ttcaaattat ccattgtatc gaaatgaatg
     8341 gcaagtgatt tggcggcttt tgcaccaaca tggcgaatgc ctaagccgaa aagtaatttt
     8401 tcaagcgagt tttgtttact tgcttggatg gatgccagta aattagttac cgatttctca
     8461 cccattcttt ctaattctaa cagtttctcc ttcgaaagga aaaacaaatc tgctacatct
     8521 ttaattaaat gctgtgaaaa tagctggata attacttttt cgccgaggcc atcaatgttc
     8581 atcgcatttc tggagacaaa gtggataagt ccttctttta tttgagctgg gcatttagga
     8641 ttaatacatc ttaacgccac ttcttcttct aaccgaacca attcactatc gcacgctgga
     8701 caattttttg gcatatggaa aggttcttca cttccgctac gtttttcggt gatgctttta
     8761 atgacttctg gaatgatatc gccagctttt ttgattaaaa cggtgtcgcc aatgcggata
     8821 tctttctctg taattaggtc ttcattatga agcgaagcgc ggctaacggt tgtccctgcc
     8881 actcgcactg gttctaacac ggcggtggga gttatcacac cagttctacc aacatttaat
     8941 tcgatatcga gtaacttagt tggtacttct tcggctggga atttataagc aatcgaccaa
     9001 cgaggcgatt taacggtgtt tcccatttgg cgttgttgct ctaagttgtt taattttaaa
     9061 acaatgccgt caatatcgta tgctaatccg gcgcgttttt ctgtccattc ttcaatgtac
     9121 gcataaactt cttctaaact gttgcaaagt cggcgttctt tattgacttt aagaccaagt
     9181 gtttcaagca tatctaagcc tgcgctatga gtttcaacgc ccatttcacc aaaatctgct
     9241 actgcataaa ggaagatatc gagatttctc gacgctgcga tttttgtgtc caattgtcga
     9301 agcgagccag ccgcagcatt tcgtggattg gcaaataaca tctggccttc ttcttcgcga
     9361 atttcattta gtttttggaa ggagcgtttt ggcatgaaag cttcaccgcg aacttcaatg
     9421 gaatagtcct tttgaagttt cattgggatg gagcgaatcg tacgcaagtt agcagtaatg
     9481 tcttccccaa tggttccatc accacgagta gcaccttgtt tgtatttacc attttcgtat
     9541 tgaagggata ctgctagtcc gtcaatttta agttcgcaca tataagcaat atcatcgccc
     9601 actttgtcgc gaattcggcg gtcaaagtct gccaagtctt cttggttaaa agcgttggca
     9661 agacttaaca tcggcgtgtc atgtgctact tttttaaaac cttctaaaac ttccccgcca
     9721 actcgttttg acggagactc aggtgtaacc cactcgggat gcgcttcttc tattttaagt
     9781 aattcttgca tcttctgatc gtattcggca tcttctactg ttggattatc aattacataa
     9841 taatcatagc tgtactgatc aagtatgttg attagttcct catacctttt tttatcagcc
     9901 atcattcttc acctgctttt tccaaattta tactttttca attggcgcaa attctgcgag
     9961 caatcgtttg acgccagttg ggcttgggaa tgcaatatct agttccattc cgctaccttc
    10021 ccctttgaca ctgacgactg ttcctacgcc ccatttttta tgactggctt tatcgccgac
    10081 tgtccaacca agcgtttctg ctccagagga tttatacgca gtagttgttt tttgtggcat
    10141 acgcggtttg gcatatggtt tgtctgcttt taatttgttt tcattaccta actcaagtaa
    10201 gtctcgaggt atttctccaa taaaacgaga ttcctgatta gaggacggac gaccataaag
    10261 catccgtgag taagcgctcg ttaggaaaag ttcttcttcc gctcgagtaa taccaacgta
    10321 agcaagtcga cgctcttctt ccatttcatc ttcctcataa atggctctag aatgtgggaa
    10381 aatcccttct tccatcccaa ccaaaaagac aactgggaat tctagccctt tggcagagtg
    10441 aagtgtcatc agtgtgacag ccccgttttg ttcttcattg tcttcttcta acttatcgac
    10501 gtcagcaacg agtgctaaat cagttaaaaa ggcaattaac gttttatcgt cattttcctt
    10561 ttcaaagttt tgtgttacag ataaaaactc gtcgatattt tctaaacgtg tttgcgcttc
    10621 aatggttcgt tcatttttta gcattgcgcg gtagcctgtt ttttcaagga tttcttctac
    10681 gagttcggtt acggataaga aatcttgcat ttgcgtgaag ccgcgaatca aatcatgaaa
    10741 cgcaactaag tctttgctta ttttaggcga aattcccgct agttcgatgc ggttaaggac
    10801 ttcaaacaag ctcaaatcat acgtggtcgc cacattattt agtttatcta aagtacctgg
    10861 tccaacgccg cgttttggaa cgttaacgat acgtgtcaaa ctaatatcat cttcattatt
    10921 actaataaga cgtaaatacg ccaaaatgtc tttaatttct tttctgtcat agaacttcgt
    10981 gccgccgacc atcgtgtacg ccatattcga cttcatgaaa tattcttcca tgacacggga
    11041 ctgggcgtta gttctataaa gaatcgcaaa gtcagaaagt ggtcgattcg agttatttac
    11101 ttcttcttga attttcataa ctacataggc tgcttcttct ttttccgtta atgctttatg
    11161 ataaaaaatc tttttccctt ctgcgttact tgtccaaaga tttttcggtt tacgattacc
    11221 attattttcg ataacacggt ttgccgcttc taaaatacgt tttgtcgaac ggtaattttc
    11281 ttctagcaaa atggttttcg cattggggta atctttttcg aaggacatga tgttactaat
    11341 gtccgccccg cgccaaccat aaatagattg atccgagtca cctacgacgc ataagttttt
    11401 gaaacgagaa gcaagctgtt tcacgagtaa atactgcgcg tggttggtat cttggtactc
    11461 atccacgtga atatactgaa atttacgttg ataatattct aaaacatcgg gcacacgttc
    11521 aaataattga atggtgacca taattaaatc atcaaaatcg agtgcttgat ttttcttaag
    11581 tttcttctcg tatttttcgt agacttcgcc gaccattttg tcatagaaac cacttgcttc
    11641 tttaatatat tcgcttgcag ttatcagttc atttttggca ttgctaatag aagccaaaat
    11701 cccccgtggc tcaaacttct tagggtcgac attcttttct ttcaaaatgc ctttaataac
    11761 cgataattgg tcactgccat ctaaaatagt aaaattacgt tcatagccaa tccggtcaat
    11821 atcgcgacgt aaaattcgta cgcacatcga gtgaaaagta gatatccaaa tagattctgc
    11881 ttctccgccc attaaattgc caatccgtga cttcatctcg cgagccgctt tgttcgtaaa
    11941 cgtaatcgct aaaatattat aaggatttac accacgttct ctcactaaat aagctatccg
    12001 atgggtcaaa actcgtgttt tcccacttcc ggcaccagcc ataattaata aaggtccttc
    12061 tgtactttct actgctcttc gttgttccgg attcaatccg tccactaatt cttttgcatt
    12121 caattgcatt ctcctataca ccaccataca aacatttgtt cttattttat catactacac
    12181 tttataatca aaccgttttc ttcctaaaaa tagttgcggt ttctagtgct ttttctaaat
    12241 cttcataaat aatattgcca acaataatcg tatccgcata ttttaccatt tcagcagctt
    12301 gttcttttga acgtattccg cccccatacc aaaattttgt attacttaat gcggcgcttg
    12361 cttttcttac aacctctgga tctccgtaca tgccgctata ttcgacataa aaaatgggca
    12421 gatgaaatat attctctgct aaccgcgcat aggcaacgat gtcttcgtcc gttaaatcgg
    12481 tcttcgcttc tgttaaatga gccacttttg catctttatt taaaataacg tagccttctg
    12541 ctgtgactcg tttccaagga ataaatgctc ccatttcttt gattaactcc tggtgtaaac
    12601 cgtgtgtcca tttactattt tctgtattca acactactgg aattaaaaaa tggtctgctt
    12661 caggtaaaat catggattcg ttgcttattt caaggaaaat cggcaagtcc gtttcaccta
    12721 ataattcgta gagcttttgg actgcttcga tttgtacatt atccgtccca ccaataataa
    12781 atccattggt tccagaatgg acgagcttcg ttagatcatt cattggtaaa ttctttgctg
    12841 ggtctaactt gaataaatgc ttcatttgct cctccaagtc tctataatgg gatatcttat
    12901 tatagcatta gttacatttc atcgcaccct tacgaccaaa aattttaact ttttttaagc
    12961 tttttttacc agttgctgtt gggatagctt ttattttatg gtatgatgag gaaaatttga
    13021 ttttattaag acttctgagt atttacatag aaaaaaggaa atggggatat tatgcaagaa
    13081 aacagagaag aatggggctc aaaagtcggg tttatattag catccgctgg gtccgcaata
    13141 ggaattggtg cgatttggaa actgccttat gtggctgcaa ctgcaggagg tggcgcattt
    13201 ttcttattgt ttttagtttt aactttactc gttgtgatgc cacttttaat tgcagaattt
    13261 gtgattggac gaggctctgg cggagatgct gttcaagctt ataaaacact cgcgcccgga
    13321 acaaagtgga atttacttgg aaaattaggc gttgtaggcg caagtatttt attttcgttt
    13381 tatagcgtag ttggtggttg gattatcact tacttaatta aaacacttgc tggcgggatt
    13441 gctggcgaaa atcaagcaag tctgctgcat gatttccaag tgacgacagc taacccgtgg
    13501 atatcagttg gcgcaacgat tctctttatt ttactaaatg tcattgttat tagccgcgga
    13561 gttgttagtg gaattgaaaa aatgagtaag tttatgatgc cagctctatt tattttattt
    13621 attgttttaa ttatcaggtc cttaacacta cctggtgcga tggaaggtgt cgcatttttc
    13681 ttacgtccag attttagtca tttcacagcg caaacggttc ttataacgct tggtcaggcc
    13741 ttcttctcac tcagtgtggg gatttcagta atggtgacct atagttctta tttaaatcgg
    13801 tcgactagtt taccgcagtc tgccatttcg gtttcgctta tgaatgtgtt tgtgtcgctt
    13861 cttgcgggat tggccatttt cccggcagca ttttcgttta atattacacc agatgcggga
    13921 cctggattgc tattcgttat tttaccttcg attttcaatc aaatgccctt tgggatgttg
    13981 ttctttatta ttttcttgat tttattctta ttcgccgcat taacctctag tttctcgatg
    14041 cttgaagcaa cggttgcgcc actgatgaat gcgggtgtta atcgtaaaaa agcaagtctt
    14101 tggatggggc tcgtgattgt cttgatggct attccaagtg cgcttagttt tggcgtttgg
    14161 agcgatgttc agattttcgg actaagtatt tttgatgctg ccgattatct tgtgtcgaat
    14221 attgtcttgc cagttggtgc tttatttatc gcaattttcg ttggttaccg attacctcgt
    14281 gaattacttt taaaagaatt taccacaagc agccattttg gaaaaaaagt gtttattctt
    14341 tggctctttc ttattaaata tattgcacca atcgcgatta ttttcgtctt cctctccgca
    14401 actggtttaa tcgattttct gttttaacaa aaaaagcaat ccgctaagtt tttagcgaga
    14461 ttgcttttct tatattgcca taaggacaat gcttgttaca caaatcaaga ttccactaag
    14521 gccaatcgcc gtaccaattg ctcgtttttc tctaacatta gcaagtgtcg tgaaaataaa
    14581 acaaataata aagacccagt gccacagtaa agaaaaatca agccccgtgc cagtggcaat
    14641 catattaatc acaaaataaa taactgcaag cgcaagaata gagatgatga caatctgata
    14701 ggttttacta ttaaactttt tcaatataat ccctacaatc ttattctggc ttcgtcattc
    14761 ttgaaaatac tacatcatac atatcattac cataatgaag tgaacgtttt acacgtgaaa
    14821 tagttgctgt acttgcccca gtttcagatt caatcacatt atatgttttt ccatcatgaa
    14881 gcatttttgc tacttggaaa cgttgagcca tggactgtat ttcattcact gtacaaacat
    14941 catcaaaaaa agcataacat tcttctaaat tctcgagcgt taaaatccct tggaagaatt
    15001 catccaatcc ttgtccacgc aacttctcta tttgcatatc tttacctcca aataatctca
    15061 tatatcctac tttcatattt taacgtacca acgcgtaaaa cacaaacgtt tctcttcact
    15121 taatgaacaa aaaaagtact atctaggaat ttatccttga gatagtactt ttcaattatt
    15181 ctgcttttgt gccaatatca attcgataaa agaaattcgg gttatctagt ttttgcattt
    15241 ctggataaag taatgtgcgt gcatcagtca tcgtttctgc ttcttttgct agtagcaaga
    15301 cgcgtccacc atcagaaata aaatcgtcat tttcatcttg ttttgtacct gcatgataaa
    15361 tcgctacatc ttctgcaaca tcatttagac cagttaattt gtttcctttt tcataatgct
    15421 ctggataacc ggcgcttgct aggacaactc ctagcgtaat ccctgatttt ttaaagcgca
    15481 catctggttt ttcgttatgg agtaaagcgt ctatcagtgc tgcaaaatca ctctctaaac
    15541 gaggcaaaac aacttgtgtt tccggatcac caaagcgtgc gttaaactca attacttttg
    15601 ggccttctgc ggttaagata agcccagcat agagaattcc gcggaaataa cgaccttctt
    15661 ttaccattcc ttttgcagct ggaagaagaa ttttttcgac agcttcgtct actactgttt
    15721 cagaaatatg tggtaccgga gaataagctc ccattccgcc agtatttggt cctttatcgc
    15781 cttcataagc gcgtttatga tcttgcgcga tagccattgg ataaacttct tccccattta
    15841 caaacgccat caatgaaaac tcttctcccg ctaaaaagtc ctcgataacg accttgagag
    15901 atgcgtcacc gaatttttct tctagcatca tatcttttaa tgcaagaact gcttcttcca
    15961 tttctaacgc tacagtgact ccttttccag cagcgagtcc atctgcttta atgacgattg
    16021 gcacaccgcg ctcatccaag tatgctttcg cttccgcata atcggtgaag gtttttgatg
    16081 ctgcggttgg aatagcatat ttctccataa attgtttcgc aaaatctttg ctgccttcaa
    16141 ttaatgctgc atttgctttt ggaccgaatg ctttaattcc agcttcttcg agagcatcga
    16201 caacgccttc taaaagaggc acttcaggcc caacaataac aaaagcaatt tctgcttttt
    16261 tagcaaaatc aattaaacca gctttatccg tttcagaaat agctacgagt tggatgttgt
    16321 ctaaacgcat tccgtcgttt cccggagcac agtatacatt ttcgacattg ttggattcta
    16381 ataatttttt actaatagca tgttctctac caccgctacc aactactaat aagttcattt
    16441 atttacacgt cctttttgag gattaatgtt tgaagtgtcg tacatgagtt agaaccatgg
    16501 aaataccata tttgtttgcc atctcaatgg attccttgtc tttaatggat ccaccaggct
    16561 gaataatcgc tgtgattccc gcttttgccg cagcttcgac cgtatcatcc attggaaaaa
    16621 aggcatccga ggcaagtaca gcaccttttg ctttctcgcc agcttgctta agtgcaatta
    16681 acgcggaacc gattcgattc atttgtcctg caccaattcc aagtgtttgt ttatcagatc
    16741 ctactactat cgcattggat tttacatgtt tcacaatttt ccactgagca attaatgctt
    16801 tcatttccgc ttctgtaggt tgtttttccg ttactacttc ataactcgct gtatcttcta
    16861 taacagaatc gctcgcttga ataagaagtc caccatttac agatgttttc tcgaaacctt
    16921 ttacggaacc ggcaaacgga acagttaaca agcgaatatt tttctttttc gctaaaatgg
    16981 caaacgcttc ttcagagaaa cttggcgcaa taataatttc taagaaaatt ttgctcatat
    17041 gttcggctgt tttcgcatcc acttctttat ttaaggcaac aatccctcca aaaatagacg
    17101 tttcatccgc ttcataagct ttcaaataag cttcttcaat attttctcca acaccaacgc
    17161 cgcatggatt catatgtttt actgcaaccg cgaccggctc tgtaaattca cttgcaattt
    17221 taagtgctgc atctgcatcc cgaatattgt tgtaagataa ctctttaccg tgcaactgtt
    17281 tcgcggaact aattgaattt tctaccgtgc caggttctgt ataaaaagcg gcatcttggt
    17341 gaggattttc accataacgc aaaacttgtt ttcgattgta agttaatgtt actttttctg
    17401 ggaaagtttc tccagtgatg ttcgttaagt attctgcaat taaagcatca taggccgctg
    17461 tgtgccgaaa aactttcgca gctagacgtt ggcgcgtttc aaaagtagtt gcgccgtgtt
    17521 cttctagttc tgtaagtacc gtatcgtaat ccgctgtatc aactacaaca gttaccgctg
    17581 cataattttt cgcagctgag cgtaacatcg aaggtccgcc aatatcaata ttttcaatcg
    17641 cttcttctaa agtaacacca gatttttgaa tcgtttcttg gaaaggatat aaatttacaa
    17701 cgactaaatc aattggcttg atatcgtgtg ccgcaatagc ttccatatgt tcagctgtat
    17761 cgcgtcttgc cagtaaccca ccatgaattg ctggatgaag tgttttaacg cgaccatcaa
    17821 gcatttctgg aaattcagtt acttcttcta ttcctgttac cggtacgcca gcttgttcaa
    17881 atgccgcttt tgttccacct gtcgaaataa tttctactcc aagttctact aatttttctg
    17941 caaatggcac gatgccgttt ttatctgaca cactaataag cgctcttttc atgataatta
    18001 atcgttccct ccattttgaa ttaatcctcg aatcactttt ggataaaaaa tatgttctac
    18061 ttgatgaatt tttccagcta aagtatctac agtttccgca tgttcaatcg gtactttcac
    18121 ttgatcaata attggtccag tatccattcc cgcatccaca aagtgcgcgg tgacaccagt
    18181 ttctgaaaca ttcgcttgaa ttgcttgacc aattgcatct tttcctttga attcaggtaa
    18241 caacgatggg tgcaggttga caatttgctc gggaaattct gctaataaag tcggcccaat
    18301 caaacgcata tatcctgcta gcactaacaa atcaatttcc aacccgcgaa gttctagtaa
    18361 aatttctgtc tcaaaagctt ctttatccgg ataatttttc gcttcaaaaa ggaacaccgg
    18421 aatctgatgt gtgtttgcgc gttctaaaac ataagcattt ggtttatcac ataccagtag
    18481 tttcacatga ggcttaataa acgcatcatc cactaaagct tgaaaattcg aaccgttacc
    18541 cgaagcaaaa atggctatat tcatcctttt gtgcctcctg tgaaaataac cgcatcattt
    18601 tcacgtgtcg taacttctcc aataacataa gccgcttccc cgttttgaac gagtacttct
    18661 aatgttcttt ccacatccgc tttcgcaact gccaacacca taccaatgcc catattgaaa
    18721 atttcataca tttcaagttc gctcaattgg ccgtatttct tcataacgtc aaaaatcggc
    18781 aacaccggcc atgaacctag ctccactttg acagctaaat catttgttaa catccgcggt
    18841 aaattctcta caaatccgcc acccgtcaca tgcgtaattc cgtgcacatc tacctctttc
    18901 aatacttcta aaactggctt cacataaatc cgtgtcggtt taagtagctc ttccacaagc
    18961 ggtacatcta gttcactgat ttccgcatcg agtgtcaatt cgttatcttt aaagaaaatt
    19021 ttacgcacaa gggagtaacc attactatga attccgcttg atggaatacc aatgagtgta
    19081 tctccttctt tgactgcgcc ttctgtaatt agcttctgtt tctctacagc cccaacagta
    19141 aaaccagcta aatcataatc ttccgcgccg tacatatcag gcatttcagc agtttcgccg
    19201 ccaattaaag ccgcaccagc ttgttcacag ccgtcagcca cgcctttaac aatttgttcc
    19261 attttcactg gatctgtttt tccagtagcg atataatcta agaaaaataa tggctcggcg
    19321 ccttgagcta aaatgtcatt cacacacatt gccacgcagt caatcccgat ggtatcatgc
    19381 ttatctgctt caattgccaa aagtaatttt gtcccaacac catccgtacc agaaacaagg
    19441 acaggttctt ttaaatgcaa actacttaag tcaaacattc caccaaatga accaagtgcc
    19501 cccatcgcgc ctaatcgctc tgttctagcc acatgttttt tgatacgttc tacaacttga
    19561 tagccagctt ctacgtccac gcctgcttta ctatatgcat tttctgccat tcgatttgtc
    19621 actcctcatt atttttctgc ttctaagctc gctaaatatt ccgcttcata atcatataaa
    19681 ggggttgggt aatcgccgtt gaaataagcc atacaaagtc ccccgtaagg ttcgttcgga
    19741 taaggtctgc caatggaatc tactaaacct tcttcactca aatactctaa agaatcagcc
    19801 ccaataatcc gacaaatttc atcaacagaa taattagaag cgattaattc atttcgcgtt
    19861 tggatatcaa ttccataaaa acaaggataa gcaagtggtg gagaagcgat tcttacatga
    19921 acttccgccg ctcctgcttc acgtaaaagc tggacaatgc gtttacttgt cgtcccgcga
    19981 acaatcgaat catcaatcat gacaacgcgt tttccttcca caaccccgcg cacggcagaa
    20041 agtttcattc taacgccttg ttccctaagt tcttgtgatg gctggataaa agttcttgcc
    20101 acatatctat ttttgatgag accaagttcg taaggaagac cagcttcctc cgcataacca
    20161 atcgctgcag aaatactgga atctggtaca cctgtaacca catctgcatc aataaaagcc
    20221 tcttttgcta atcttttccc agaacgtttt cttgccgagt ggacattaat tccagcaata
    20281 ttagagtcag gtcgcgcaaa ataaatgtat tccatactgc aaatcgaatg cgtcacattt
    20341 tccgtgaatt tttcaattcg aagcccgtca tcattaataa taattagttc acctggctcc
    20401 acatcgcgga caaactcagc gccaaccgtt tcaaaggcac atgtttccga agcaactacg
    20461 taagaatcac caatgcgacc tatcgaaagc ggtctaaaac cattcgggtc aagcgccgca
    20521 tacatcgtgt cttccgtcag aagcatgtac gcaaagccac ccttaacctt gttcaaagcc
    20581 acttttaaat cttccacaaa atcacctgta tggctacgtt taattaaatg cgctaacact
    20641 tctgtatccg aactcgtttg aaaaatagcg ccttcttctt ctagttcacg gcgtaaactt
    20701 ttcgcattaa ccaaatttcc attatgcgca agtgctaaag aagaactatg aaagtgaaat
    20761 aaaaatggtt gtacgttccc taagtttttt tgaccagctg tcgcatatcg aacgtggcca
    20821 atggctgctt taccttttaa atcgtctagt tcaccatgtt taaatacgtc tgctaaaagg
    20881 ccgagatttc ggtgaccttt tagtgtttca ccgtctgtcg aaacaattcc ggcaccttct
    20941 tgaccgcgat gttgtaaact atgcaaccca taataggtga tttccgctgc attaggatga
    21001 tcccaaatac caaaaatacc acattcttcg ttaagtcctt ttacttcagc aagcatggaa
    21061 tagccccttc ccaaatggat cgtaattccg ttgttttcgc tgtaacttga ttttccttat
    21121 gtttcacacg aatcgtatca tcctcggtta ctacaccaag gcggtatact ttttccagtt
    21181 ccattaattg cgcaaaagct gcttcgtttt ccggttttac cgatactaag aaacgtgatt
    21241 gcgattcact gaatagttga ttcaactcaa acggtacttc tacatccgca ccaagccctg
    21301 ctttaaaagt cgcttccgca agggcaacac caaatccacc ttctgccaaa tcgtgactag
    21361 aagcaactag accttcctga atcgccgtta gaagtaattg ttggtatttt ttctctgtcg
    21421 ttaaatctaa ttccggcgca cgtccgctaa ttttcccttg ttgcaatttt tgcaattccg
    21481 aaccactata ttcagctttt gtttcaccaa ttaagaaaat cacatcgcca ctatttttaa
    21541 aatcttgtgt cgtaatatgt gccaaatctt ctactaaacc aaccattcca atgactggcg
    21601 ttggataaat tccggtacca tctgtttcat tataaagcga tacattacca gagataacag
    21661 gcgtatcaag ttctaaacaa gccgcactaa taccatcagc cgctttttca atttcccaaa
    21721 aaatttctgg tttttcagga tttccaaagt tcagtccatc tgtaatcgct agtggtttcc
    21781 cgccagaaca aacgatattg cgcgccgctt ccgcaaccgc tatcgctccg cctacttctg
    21841 gatcaagata caaatagcgt gagttacaat cagttgtcat ggcaattgcc ttctcggtcc
    21901 cacgcacacg aacaatcgcc gcatctgaac caggtacaac agctgtatcc gtccgaactt
    21961 gataatcata ttgctcataa atatggcgct tactagcaat cgttggctga gcaagcagtt
    22021 ccttccaaac accgaccaca tcttccataa ctggcacaaa cgattcctct tcttggaaag
    22081 cttgataacg agctggctct ttggaaggtt tatgataaac tggcgcatct tctgcaagcg
    22141 catctacagg aacgttcgca actacttcac catgatgaat aattttgtac attttatcat
    22201 ctgttacttg accaatcaca acagcctcta aaccataacg ttcaaataac gcttggattt
    22261 cttccacatg cccttttttc acacatagaa gcatccgttc ttgcgattca gaaagcaaca
    22321 tttcataagg cgtcatattt agttctcgtt gcggcacatc atccataatt aattctagcc
    22381 cagcgcccgc ttttgaggcc atttcagaac ttgaactaac gagacctgca gcccccatat
    22441 cttgaattcc cactaaaata tctgaatgat cacgaatcac atctaaacat gcttcaagca
    22501 acaatttctc cataaaagga tcgccaacct gtacagcaga gcgttgttgt tcgccttctt
    22561 cactaaactc tacagaagca aaagtagcac catgaatccc gtcacgacca gttttagcgc
    22621 caacatacat caccggatta ccaattcctt ttgcttgccc tttttgaata tctttcgcct
    22681 cgattaaacc aacacacatt gcattaacta gcggattttt tgtataacaa ggatcaaatt
    22741 ggatttcgcc accaaccgtt ggaatcccaa tggagttacc gtatcctgcg attcccgcaa
    22801 cgacttcact aactaagtat ttcgcatggg gtgtatctaa ctcaccaaaa cgaagcgagt
    22861 taagcattgc aatcggtcta gctcccatcg agaacacatc acggataatc ccgccgaccc
    22921 cagtcgcagc cccttgatac ggctccacgt aggatggatg attatgactc tccactttaa
    22981 aagcaacacc taaaccatcg ccaatatcga caatcccagc gccttcacca ggtccttgta
    23041 atacttgttt gccttctgta ggaaatttcc gaagtactgg tttagaattt ttatagctac
    23101 aatgttccga ccacataaca gagaaaagcc cagtttctgt ataattaggc tcgcgtccaa
    23161 gaatcgaaca aacaagctca tattcactat cagttaagcc catttcttga taaatctttt
    23221 gttctttaat ttcttttgtc gttggctcca tgttaggcat ttacttgttc ctccttccaa
    23281 gcttttacaa cggactcgaa aagtcttaaa ccatctgtac cgccaataat ttcttctacc
    23341 gcgcgttctg ggtgtggcat cattccaagc acattaccgc gctcatttac gatccccgca
    23401 atatccgcac ggctaccatt cggattcacg ctatcatatg taaacacaat ttggttatta
    23461 tcttttaatt ttaaaagtgt ttcatcgtca cagtaataat taccttcccc gtgagcaact
    23521 ggaacttgga taatttcgcc ttctttataa agcccggtaa acatcgtact tgcattcgcc
    23581 acacgaagcg gcaccgtctt acaaataaaa tgcaaattat tgtttctaat taaagcacct
    23641 ggcagtaaac caatttcagt taaaatttgg aatccgttac acacaccaag cactggtttt
    23701 cccatttcag caaagcgtaa aacttctggc ataatacttg aaaatttcgc aatcgcacca
    23761 gttcgcaagt aatctccgta agaaaatcca cctggaagta aaaccgcgtc aaagcctgca
    23821 agacttgttt ccgcatgcca tacatattcc gcctcctcgc caagagaatc gcgaatcgca
    23881 tgtagcatat caagatcaca attagaacct gggaactgaa tgacagcaaa tttcatcgtt
    23941 taagcctcct ctatttcata tcggtaatct tccatcaccg gatttgttag cagtttgtcg
    24001 cacatttcat tcaatacttc atgaatatct cgatctgatt tcacaacttt tagttccata
    24061 aatttaccaa tacgaacatc ttctacttcc tcataaccca tgcttttcgc tgcatctttt
    24121 actgcaacac cttgtggatc taatacgctt ttctttaaag tgacataaac tttgacatta
    24181 tacattttgt ggcctcctag ttttgaactt gctttaatct attcaatact tctgtataca
    24241 catctgttaa attgccaata ttccgacgaa agacatcctt atcgagcttt tgatttgttt
    24301 ccttgtccca aagtctacat gtatcaggcg aaatctcatc tgctagtaaa atattcccag
    24361 tcgcatcccg accaaattct aatttaaaat caattagcgt aatattcatt tgattgaata
    24421 attcttgtaa caccttatta atcgaacgag cagcctggcg aattatatcc atctcactcg
    24481 ttgtcgcaag ctctaaataa agcacatggt catcattaat aaacgggtca tctaacgcat
    24541 catctttata gtaaaattct actatcgcat ttggaattag ctcgccttct tcttttccaa
    24601 gccgtttcgc aagactccca gccatcacat tgcgaacaac cacttcaagt ggaataattg
    24661 atacttcttt caccaattgc tccgtttccg aaatcgctcg aataaaatga ctctctattc
    24721 ccgctcctgc taaatgagaa aaaataagcg atgtaatttg gttattaagc tcacccttcc
    24781 cagcaaaaga ttcctttcgc accccgttta gcgctgtcgc atcatcctta taggcaacac
    24841 gcaagacacc tgcttcttct gttttaaaaa gtcgttttgc ctttccttca taaaccagtt
    24901 cattagtcac gataatttat ctccttataa attacttaac ctctttgaaa aaataaatat
    24961 caaagaggtt aggttgtatt ctgcccgtaa ttataatcct aaacgatcaa aaattaagtc
    25021 gacattcttc aggtgatagt tgtaatcaaa gcaatctgca atttcttccg cagataggtt
    25081 ttcaataatg gttgcatctt gttctactaa ttcacggaaa ggtacttgtt tttcccaagc
    25141 ttccattgct cttggttgta cgacatcata cgccgcctca cgagctaaac ctttatcaat
    25201 aagtgccagt aatacacgct gtgaataaat aagtcccagt gttctgtcca tattgcgttt
    25261 catattttct gggaacaccg tcaagttttt cacgatattt ccaaaacgat tcaaaatata
    25321 atcaagtaaa atagtggaat ctggcagaat aattcgttcc gctgagctat gagaaatatc
    25381 acgttcatgc caaagtggca cattttcata agcagtaacc atatgaccgc gaataacgcg
    25441 cgctaatcca gttacatttt ccgaaccaat tggattacgt ttatgcggca ttgcagatga
    25501 acctttttgt ccttttgcaa agaattcttc cacttcacgc acttcacttt tttgcagtgc
    25561 acgtacttct accgcaaatt tttctacaga agttgcaatt aatgcaagtg ttgccaaata
    25621 ttctgcatgg cgatcgcgtt gcaacgtttg tgtagaaatc ggcgcaggag ttgttcctaa
    25681 tttttcacat acgtaagcct ccacaaaagg atcaatattc gcatacgtcc cgaccgcacc
    25741 agagattttc ccgaattcca caccatcagc tgcaaaatta aaacgttcta ggttacgttt
    25801 catttcctcg taccatagag caagcttcaa gccaaaagta gtaggttccg cgtgaacacc
    25861 atgtgtacgt cccattgtta cggtatattt atgttctttt gctttttcgc caataatcgc
    25921 aatgaaattt tccaaatcct tacgcaaaat ctcattcgct tgtttaagta aataagaatt
    25981 cgctgtatcc actacgtctg ttgaagttaa gccataatga acccatttac gttccgcacc
    26041 aagcgactca gaaactgaac gagtaaatgc cacaacatca tgtctcgttt ctagttcaat
    26101 ctcatgaatc cgatccacat caaactttgc attagcacgg atcttcgcaa catcttcttt
    26161 cggaatatca ccaagctctg cccatgcttc acaagccaaa atctccactt ctagccaagc
    26221 ctgataacga ttttgttctg tccaaatgtt gcccatttct ttacgagtat aacgttctaa
    26281 catcctttta aattcctcca gttacttcca aatttgcgtt tcttctaaat cttgtataac
    26341 cgcttttggt tcatcagcaa gcacagtaac atgacccatt ttgcgattga ttttcgcttc
    26401 tttttttcca taataatgta caaaccaatg tggataattc accatttgtt tattcactgc
    26461 atcgacatgt tgccctaaaa tattaatcat taaggctggt tttaagagtt ctggttttac
    26521 aagtggcaat ccaacaatcg ctcgaatatg ctgcgtaaac tgagaaatag aacaagcttc
    26581 aattgtaaaa tgcccagaat tatgaggtct tggagcaagt tcatttacat aaatagcccc
    26641 tgattttgtc acaaacattt ctactgctaa aacaccacat aattgaagta catctgctaa
    26701 ctttctcgca atttcttccg cttcctcatg cacgtcatcc gccacatctg caggagccgt
    26761 agttgtatgc aaaatattat ttacatgtac attttctgca actggaaaag tttctatttg
    26821 cccttctaaa ttacgagcga caaccacaga aatctctttt tcaaaaggaa tccaagcttc
    26881 tagtacacaa gagccgtatc gcaacaatct cgctgctgtt tcaatatccc ttgcatcatg
    26941 aataaccact tgccctttcc cgtcgtatcc accttgtgcc gtttttaaaa cagcaggata
    27001 tccaatactt ttaatttcat tttcaatttc atcttgttcc actataaccg catacggcgc
    27061 aatgttaata ttagctgatt ccagataagc tttttccaaa atcctatcct gtgtaatcga
    27121 aagcaattcc gatccttgcg ggacagatac taagttttgc gtcattttca aagcatcata
    27181 gtcgatattt tcaaattcat atgtaactac atctgctttt tcggaaagtt cgcgtaatgc
    27241 tactttatca tcatagtcag caataatttg ttcatcactt acttgagcag ctgggcaatc
    27301 agcggtagga tcaagaacaa taatacgata ccccatcgct ttcgccgcaa gagcaagcat
    27361 acgtccaagt tgtccgccac caataatacc aatagtacta tttgtcagta aaaatttttt
    27421 atccaagata atcactactt tctagaactg tttcttctag tgtagcacgt cttttttgta
    27481 atctgttagt aattgcatcg tccgttatgg ataaaatttg cgccgctaga aggccagcat
    27541 ttacagcacc actttctcca atagcaactg tcgctaccgg aacacctcca ggcatctgta
    27601 caatagaaag taacgaatcc attccattca acgcttttga tttaattggc acaccaataa
    27661 caggcaaagt cgtctttgcc gcaatcatac ctggcaaatg cgccgcgccc ccagcaccgg
    27721 caataataat tttcaaacca cgttcccgcg cttgttctgc atattgaaac attaaatctg
    27781 gtgtacgatg agcagaaacc acttttttct cataagctat ttctaattca tctaatacat
    27841 cacatgcttt tttcattgta tcccaatctg aggtactccc cataatgaca ccaattacag
    27901 caggcattac gtgatcaact ccttaataat ctcttttcga ctccttcatt ctaacaatag
    27961 gcacgataaa tgtcaacgaa aaatcgaaca tttaattgtt acattttatt aacgttcgtg
    28021 tttaggtcgt atttgctctt tttactagca ttatgtatct aatttcacta aataaataaa
    28081 aaaagaagct accatcaaag gtaagctcct cttcatttcc gaacttgttt aacccaaaaa
    28141 ccaccgtgaa tttgttttgg ctcagaggaa acaataaatg ccccattatc aatttcaata
    28201 atgtgtttat ataatttccg ctcattcttt ctttgagtca aaatttcaag catcatccgt
    28261 tcaccatcac gtccactcgc aagccaacta gtaaccccat aacctagatc tcgaatttga
    28321 tttggtaagt ctaagttata ttctttggta ataacattca ctgtaatata gcctaaagca
    28381 attcgctctt caattttcat accaacaata attcctacac caaatccaat agcatatgct
    28441 aaaacattgg caatattatt taagttatcc aaaaccaaac taagagcaac tacatagata
    28501 atcatttcaa acacacttga aagtgcagct aagtaacgat aacctttcat cgttaaaagt
    28561 aacctcaccg tataaatcgt cacatacaaa atatttacaa taaaaatagt agccactata
    28621 aatataccgt tatccactaa aataacccct ccacctaaaa actacattcc actgagtctt
    28681 ttactaatat aacatccatt aagatagctg acaaaagaaa cacttcaaca aaaaaagccc
    28741 taaataatta ggactttt
//
LOCUS       DASEAA010000019        26379 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.019, whole genome shotgun sequence.
ACCESSION   DASEAA010000019 DASEAA010000000
VERSION     DASEAA010000019.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26379
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.019"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            160..1020
                     /locus_tag="U0342_000693"
     CDS             160..1020
                     /locus_tag="U0342_000693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GRP family sugar transporter"
                     /protein_id="HEM2422053.1"
                     /translation="MNIMIALIPALLWGTVPLIITKFGGSTRQQTMGMTLGALTFAVI
                     VFFFTDPVYTLKTVGISFITGCLWTVGQMFQLQAFKIIGVSKAMPISTGMQLVGTTLC
                     GVILFHEWDTTLRIILGFIALALIVGGIFLTSYAEKEEDGTNALKQGLITLFISACGY
                     VGLVVLIQGFKIDGINAILPQAIGMVLSALIMTHSGGTEKRFNKRTLLLTIPGIIWAA
                     GNVAMVHANQLVGVATGFSLSQLGVVISTIGGIVLLKEKKTQKEMFFVIVGVVLVVLG
                     GILIGVAKGA"
     gene            1089..3086
                     /gene="metG"
                     /locus_tag="U0342_000694"
     CDS             1089..3086
                     /gene="metG"
                     /locus_tag="U0342_000694"
                     /EC_number="6.1.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine--tRNA ligase"
                     /protein_id="HEM2422054.1"
                     /translation="MLPEEKNTFYITTPIYYPSGKAHIGHAYTTVAGDAMARYKRLKG
                     YDVFYLTGTDEHGQKIQAKAKERGISEQEYVDEIAEGFQELWKKLEISNTDFIRTTQD
                     RHKTSVEKIFEQLLEQGDIYLGEYEGWYSVSDEEYFTETQLEEVYKDENGKVIGGKAP
                     SGNEVELVKEESYFFRMSKYADRLVEYYNSHPEFILPESRKNEMINNFIKPGLEDLAV
                     SRTTFDWGIKVPGNPKHVVYVWIDALSNYITALGYNTDNDTKFQKYWPADVQIVGKEI
                     VRFHTIYWPIMLMALDLPLPKMVFGHGWILMKDGKMSKSKGNVVDPYMLIDRYGLDAL
                     RYYLLREVPFGSDGLFTPEDFVDRVNFDLANDLGNLLNRTVAMINKYFDGEIPAYQGN
                     VTEFDQTLVDFKNNVVKEYEGSMDHMQFSVALNQLWSLISRTNKYIDETAPWTLAKDE
                     DKRTELASVMTHLAENLRIIAVLLQPFLTRTPGEIFLQLGLQEENLKKWDSIYGYGEI
                     PAGTTVVKKGTPIFPRLEAEVEVTYIQDEMKGSAPAPAKEAAEVEALETPQIGIEDFD
                     KIDLRVAEVKQVDKVKKADKLLCFQLDLGEGKLRQVLSGIAEFYQPEELIGKKVIVVS
                     NLKPVKLRGLMSEGMILSGEKDGKLSVIEASSALPNGAKVK"
     gene            3250..4464
                     /locus_tag="U0342_000695"
     CDS             3250..4464
                     /locus_tag="U0342_000695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family transcriptional regulator"
                     /protein_id="HEM2422055.1"
                     /translation="MDILRKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMS
                     TLTYILDDLQQEGIILEGAETSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDL
                     NAEIMENTSIPFSSEKKPEEAIELIAKNVKKMCENRDMNHLLGVGIAISGLVNRRKGT
                     VIRSTMLGWENVALEAMLHAYFPDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVG
                     AGLGLSVVINRQIYYGAQGGAGEFGHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGE
                     ELKEAYPTSELKDFHFDKVAKSARAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVI
                     IVGEGLHHRDLFLTKIDEIASQNFFSGAGFETEITTTSLEDPAWLQGAALLVIHQLFQ
                     VPIYEEEQTLLR"
     gene            4500..5378
                     /locus_tag="U0342_000696"
     CDS             4500..5378
                     /locus_tag="U0342_000696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2422056.1"
                     /translation="MVGMTRKKTLFWLCIFLLPNLLGFLIFIAIPILGSLGISFTDWD
                     LVSTIHFTGFENYKRLFNDPEFWKSFRNTITFIIGYLPSVMILGLACALMLNQKIKLR
                     PFFRAVYFLPVITSWVAVSLVWKWLFNPSYGLINYFLSLIGIAGPNWLTDPQTAMIAV
                     IITSAWKDIGFVMVLFLGGLQNISPSYYEAANMDGASKLRQLFSITIPLLTPTTFFVT
                     IISLINSFQVFDQVMIMTEGGPSGATMTLVQNIYNHAFRYFEMGYASAMSWILFIVIF
                     IITIIQNKLQKRWSNY"
     gene            5378..6226
                     /locus_tag="U0342_000697"
     CDS             5378..6226
                     /locus_tag="U0342_000697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463711.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2422057.1"
                     /translation="MKTEKSGSPKWQLFKNILTYTIICLGGIIMLMPFVWMVSTAFKT
                     GAANMVLPPQFIPKEPTTANFTQVFEMFPMLRFLVNSVVVAVVTTLGQMLFCSMAAYA
                     FARIPFWGRDKLFLLYLATMMVPAQVTMIPQFILMKQFGWLDSYAGLIVPALFSVFGT
                     FLLRQAFMGIPKELEEAAFMDGANHFTIFRKVILPLAKPTFATLGILTFMQSWNSYLW
                     PLIVTSSQEMATLPLGLSLLQGRYGTNYGLMMAGVLISVIPILAVYLFAQKYFIQGMA
                     MSGMKE"
     gene            6254..7510
                     /locus_tag="U0342_000698"
     CDS             6254..7510
                     /locus_tag="U0342_000698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2422058.1"
                     /translation="MKKGLLLLMVVVLSVFGLSACGGGSSSGDKTEITYYQFSAPADG
                     KALDEMVKEFEKQNPDIKVNVQTIAFNDYFTKLQTQIAGGDAPDAFELNYETFMQYAE
                     KGVLADLTSYIEKDKDFDPSTLNKQAYDAFKYDGKQYGMVESFSNVVTIYNKDLFDKA
                     GVEYPTADWTWKDEEAAAKKLTDAKNKVWGTSQPVTMNEFYKVAAQNGGSIFNEDLTK
                     TTINSPENVAALTHLTNEVTDSKVAPSPADLSGQLPEDLFMNGQIAMLHTGIWLFDMF
                     QDAPFKWDVQVEAGNTQKATHFFANGIGVSKDSDKKEAAFKFASFMSANEEAAKIRID
                     NNWELPATENKEILQPYLDATPPDNREAVFESLQYMVLPPVVKDWNKISDYTNSEFEK
                     VLNGDSTPEKALKNSEDNINKTMGFK"
     gene            7671..10895
                     /locus_tag="U0342_000699"
     CDS             7671..10895
                     /locus_tag="U0342_000699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009925034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEM2422059.1"
                     /translation="METKPNFTTDSVLETASWLWLSSKINHYDREEVEPVIAFLVENW
                     NRPEKSIWGSAENDIYLATISSVYSALLDVKNTFPKPELQQTITIIRDYCFDNLLKGD
                     SILTGFNTRKVSTDQLLSVLPFGLFSPEDLVMVAAVGKMEQQLVQDDGVLPYSGAPRV
                     NSFATALMALYFLEKSDQDKALHYLNMAMKMEDNDELGAIFIEINQAFRAMESEVTAH
                     ISHDPFGHENRYEQQLTERTPHYPETEMHFSAACEVISEVEPIQVELVLKEKDWTILC
                     EKKEKNDVQIWEALVPPLEEVGEYTYYFRATMKDQTTLTSDDYTVEPIWKHWSEEAAV
                     CETEQGLMVLFKENPSSIIPVEFAAKSDELVIGLKPSFEASNVKTKSSGQLKKDDLEI
                     IVSNNPVRLEVHFKGNLILESHKIYPALQWYTDKAGAINKVKLHLDAPKEEEYYGFGE
                     RYNALGQRGNVLDCFVYNQYRDQGTRTYIPMPFYHTNRDYSVFVDTARYTSFDLGNQL
                     ADKHTITVEINGCDTDICLLMGDIRSAVANYMKKTGKPAMVPVWALGPWMSSNNWDRE
                     SVVRTEVETTQELQIPSTVVVLEQWSDEATYYMFNDAEYDEKAPSEAYNYDEIRFPSW
                     GRWPDPKGMVDYIHDNKMKLILWQIPIQKYLNRQQHPLKDREEAYMIEKGYVVKNPDG
                     SPYRIPENWFTESLIMDFSNEEGKKWWFDKRQYLIDIGVDGFKTDGGEFVFGEGLQFA
                     DGRRGDEMRNLYPNDYVEAYYQFAQQNDGMTFSRAGYTGAQNFPAHWAGDERSTFDAF
                     RRSLIAGLSAGFSGIPFWSFDFAGFNGDIPTAELFIRSAEMATFCPIMQYHAESKAEF
                     NQDRTPWNIASRTGDDSVIPIYRHFANVRMNILPYIYNESLKCVETGLPMMRALLLDY
                     KEDPRVSDMYDQYLFGEAMLIAPVIEDGVRSREVYLPEGTWYDFWNGTKVNGPTLRKC
                     KADKEEIPVFIRGGKAVLCNVDATLKLGSWVGNTVEEYDTPLLKIYVDGDFTEEMTDH
                     LSEKWLVKVTENADEVVVSVQTNTPAYEVEVIGTTKKVQIKKGR"
     gene            10898..13189
                     /locus_tag="U0342_000700"
     CDS             10898..13189
                     /locus_tag="U0342_000700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 31 protein"
                     /protein_id="HEM2422060.1"
                     /translation="MDASTSFAILPSNVKQKTAFERKVNQVKTASWANNCLTGTLDIG
                     QFSCYFVNEKIARVTVNPFGEVDLTPSIAAIHDTEKQAAKFTETTDGYELHFADKEII
                     ICKNPFQIIMKQAGKRIFQTEGLAINRYKEHQISIQSEPGTAIFGLGEKTGALNKAGS
                     IISMWNTDVYSPHNKDTVELYQSIPFMIADTAETTYGLFYDNSHRTEFDFQSFEEMYT
                     ILAEGGQANLYVIFGEDTKEVVANYTDLTGKTPLPPKWSLGYHQSRYSYTSEEEVERI
                     ANTFKEKKIPLDCVFMDIHYMDDFRVFTFNPDTFPNGPELIARLREQNIDVVPIVDPG
                     IKKDVDYSVYQEGIKHNYFCTKLEGSIYYGDVWPGVSAFPDFLSTTVQHWWGGLHKFY
                     TDLGIRGIWNDMNEPSVFNESKTMDLDVVHNLDGKNVTHKEAHNLYGLYMSKATFEGL
                     KRLVPNERPFSLTRAGYAGVQRYSAVWTGDNRSHWEHLEMSLPMIMNLGLSGVAFTGA
                     DVGGFSSDCTKEMLIRWTQAGAFLPYFRNHCVQDSIYQEPWAFGADAEKIVKQYIELR
                     YAFLPYIYTEFQKTAESGLPLVRPLYMEFKDERDLIQVNDQFMLGENILVAPIVREGQ
                     VKRLVRLPRGLWFNYWTKEQFVGGDYIIADAPIDTMPIYIKAGTILPVGSSVQNTKET
                     QDLTLEVYLDGDVASGYVYNDDGKSYHYESGAASKTTLTATFKNGEVLINATHQGEAN
                     LQHKVTTIQVFGEKTDKITRAGI"
     gene            13193..14854
                     /locus_tag="U0342_000701"
     CDS             13193..14854
                     /locus_tag="U0342_000701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM2422061.1"
                     /translation="MKEKDWWKKSVVYQIYPKSFNDSNGDGVGDIQGIIEKLDYLKEL
                     GVDVIWLSPVYDSPQDDNGYDIRDYQKIYEEYGDMATFDQLLQGLHDREMKLVMDLVV
                     NHTSDEHKWFEESRKSKDNPYRDYYFWREENEINNWGSIFSGPAWELDEKTGEYYLHL
                     FSKKQPDLNWENPKLRQDVYNMMKFWLDKGIDGFRMDVINFISKNTDFPDGPVPDGQI
                     YGDAGNDFCNGPRIHEFLQEMNQEVTSKYDVMTVGEMPGASTTDAQIYTNPANNEVDM
                     IFTFEHMNLDSDGDNKWDLKPIYLPDLKENMSEWQVALQENGWNSLYWNNHDQPRIVS
                     RFGNDNRFRVRSAKMLATCLHMMKGTPYIYQGEEIGMTNVHFETLDDYRDIETLNMYK
                     ERKEQGHSHESIMQSIYTKGRDNARTPYQWDNSENAGFTTGTPWLKVNPRYTEINNEE
                     ALKNPDSIFYYYQNLIKLRKTTEIITTGNYRLLLPKDEAIFAYERYTENEKLVVLCNF
                     TEEEQVISDENILNEIQKGSVLVNNVPNIIEGTLRPYEAIVYQIK"
     gene            14927..15724
                     /locus_tag="U0342_000702"
     CDS             14927..15724
                     /locus_tag="U0342_000702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEM2422062.1"
                     /translation="MILLGGILLLFDTHVHLNDEAFDDDIEEVIKRAQENDVTRMAVV
                     GFNKETIDRALELAEKYDFISLIVGWHPTDAITFTDEDLEWLRDLALTHPKVVALGEM
                     GLDYHWDTSPKETQFEVFRKQIRLAKEVNLPIVIHNREATEDVVRILQEEHAEEVGGI
                     MHCFGETVEVMEACLAMNFYISFGGTVTFKNAKLPKIAAQAIPIDRLLIETDAPYLAP
                     TPNRGKRNEPGYVKLVAEKIAELKEMKYSEIATHSTENAKKLFKIKD"
     gene            16016..17230
                     /locus_tag="U0342_000703"
     CDS             16016..17230
                     /locus_tag="U0342_000703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="resuscitation-promoting factor"
                     /protein_id="HEM2422063.1"
                     /translation="MTMENSSNVAQSSKWKLPIMIAGFVIVVALVFYFVFEGTKNDIT
                     IVNAGEKIESRTHAKTVSEALDEAGIKVSERDEIAPGKNAEIKDGMEIKYLPARQITI
                     NDNGTKKDVWSTKANVADLLKDENITTRPQDVLNVALDTKLKNGLEVNINRAIQLSLQ
                     NGAKKDTVWTTKTKVSDLLAEKNIKLDQDDRVSPAKDSNLKEKMTVEVTYVNSKAEKK
                     NEQVKFETVYKEDDSLNKGVEKVVQEGKNGEKVVEYKVTFENGKEKKRDVIKENVTSK
                     KTDKVVVRGTKEKVVATPVSNVSTPSTTSSSSSTPSGGKTYRMESTAYSGGGTTAYGI
                     NLSANPGLKVIAVDPRIIPLGSKVWVEGYGEAIAGDTGGAIKGNIVDVYFPNESQCYS
                     WGRRMVTVKVLN"
     gene            17332..17907
                     /gene="rnmV"
                     /locus_tag="U0342_000704"
     CDS             17332..17907
                     /gene="rnmV"
                     /locus_tag="U0342_000704"
                     /EC_number="3.1.26.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease M5"
                     /protein_id="HEM2422064.1"
                     /translation="MNGKPVIHEFIVVEGRDDTTAINRSVIADTIETNGSALSQETIE
                     KIRHAQELRGVIIFTDPDFPGEKIRKQIDSAVPGCKHAFINRQDALPKAGRGLGVEHA
                     SSANIREALENFHTSGTPAEKQFISKDILIHLGLLGGAGAKERREKIGNILKIGYTNG
                     KQLQTRLESFAISEDQLVAACQKIMQEEENE"
     gene            17900..18787
                     /gene="rsmA"
                     /locus_tag="U0342_000705"
     CDS             17900..18787
                     /gene="rsmA"
                     /locus_tag="U0342_000705"
                     /EC_number="2.1.1.182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (adenine(1518)-N(6)/adenine(1519)-N(6))-
                     dimethyltransferase RsmA"
                     /protein_id="HEM2422065.1"
                     /translation="MSKDIATPGRTTEILKKYGFLFKKSLGQNFLIDSNILTRITDTA
                     EITKETNVIEIGPGIGALTEQLAKTANEVVAFEIDQRLLPILDDTLSAYNNIQVVHGD
                     VLKADVEEVIAEQFAKPDLPLKIVANLPYYVTTPIILKLLHDNIPADSMTFMLQKEVA
                     DRISAVPSTKSYGSLTIAIQFYMEAELAFIVPKTVFMPQPNVDSAVIHLKRRKEPLAE
                     VNDEEFFFEVTRASFAQRRKTLWNNLASKFPALKPRKDDLVEGLNAIGIDLIRRGETL
                     DIPEFAKLSNFLGDFLKGK"
     gene            18907..19164
                     /locus_tag="U0342_000706"
     CDS             18907..19164
                     /locus_tag="U0342_000706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Veg family protein"
                     /protein_id="HEM2422066.1"
                     /translation="MPKTIASIKTNLDSRLGKALTLKANGGRKKTIERCGILAETYPS
                     VFIVELDQDENNFERVSYSYTDILTDAVELVFTDDNKELAL"
     gene            19303..20184
                     /locus_tag="U0342_000707"
     CDS             19303..20184
                     /locus_tag="U0342_000707"
                     /EC_number="2.7.1.148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-(cytidine
                     5'-diphospho)-2-C-methyl-D-erythritol kinase"
                     /protein_id="HEM2422067.1"
                     /translation="MKISITAPAKINLSLDALYKREDGYHEVEMVMTTIDLADRLYLE
                     RLDEDKIVLDVKAHFIPEDRRNLIYQAALLLKKRFDVKMGVRITIDKHIPVSAGLAGG
                     SSDAAAALKGLNVIWELGLSIEELAEISSEIGSDIAFCVYGGTALATGRGEKISALPN
                     IPGCWIVLAKPSISVSTPTIYKELQVDNVEHPDTQKMIESIKNGDLDGIFASTGNVLE
                     SVTLEKNPQVKRIKDRMLAFGAEAALMSGSGPTVFALIKQYSRAKRVYNGLRGFCEEV
                     YMVRPWSEGENDTNINN"
     gene            20206..20943
                     /gene="chbG"
                     /locus_tag="U0342_000708"
     CDS             20206..20943
                     /gene="chbG"
                     /locus_tag="U0342_000708"
                     /EC_number="3.5.1.105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitin disaccharide deacetylase"
                     /protein_id="HEM2422068.1"
                     /translation="MKIIFNADDFGISPGAVYGILESYKRGVVKSTTLLANSPAFDLA
                     VEVAKENPGLDIGAHLTLTFGSPVLQGLETLTDDDGRFRRNYTSLENGLADVDMNEVE
                     RELTAQIEKILDAGITISHFDTHHSIEPLIYPVQHKLAEKYGVSIRRHSDVSDFGAIK
                     TPDLFATEFYADGVSFETIKKLVQKHIGTNDVVEVMTHPAFIDETLREISSYVEPRIK
                     EVSILTSRELQAYLGQQEVEIISFRDL"
     gene            21107..21925
                     /gene="purR"
                     /locus_tag="U0342_000709"
     CDS             21107..21925
                     /gene="purR"
                     /locus_tag="U0342_000709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pur operon repressor"
                     /protein_id="HEM2422069.1"
                     /translation="MKIRRSERLIDMTQFLLSHPRKLVPLTMFAERYGSAKSSISEDL
                     VIIKKTFEDRGIGTLETVPGAAGGVQYISIAGNDDVLDFVHTLCNRIAEPNRLLPGGY
                     LYLSDLLGEPVTLKAIGKILATKFNNQKIDAIMTVATKGIPIAQAVAEHLSVPFVIVR
                     RDSKVTEGSTVSINYVSGSSKRIEKMELSKRSLAEGSNVVIVDDFMKAGGTINGMKNL
                     LEEFNAHLVGIGVLVESEYAEERLVDDYVSLVKIKNVNMKEKQIEVVDGNYFNS"
     gene            22100..22777
                     /locus_tag="U0342_000710"
     CDS             22100..22777
                     /locus_tag="U0342_000710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyD family secretion protein"
                     /protein_id="HEM2422070.1"
                     /translation="MKKWVKWLIVIVIIAVVAVGAVFLLSKNSGSVTQEKLVTAKVKQ
                     GDMKINATGTGAISPVNTQVPDYDELQLVAQMDELDIPNIKKDQEVKVTVTALPDKTY
                     TGKVKEIAEQGQVQNGVSSFSVIISLDKTDDLKAGMTADASILVNEKKDALYVPIEAV
                     QKDSDDKYYVLVPEEKDNGKTKKVKKFVETGLHNEDNIEITKGVKKGEKVILPTQETS
                     TVPGAPS"
     gene            22826..23518
                     /locus_tag="U0342_000711"
     CDS             22826..23518
                     /locus_tag="U0342_000711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2422071.1"
                     /translation="MPKPLIDMKNLTKTYTLGGETFKALDDVTFTVEQGEFLSIVGPS
                     GSGKSTLMNMIGCLDVPDEGSYHLDDVDVFKLSDNKLSEIRNKKIGFIFQQFNLLPKL
                     SAFENVELPLIYAGLSVSAREKAAIECLEKVGLLEKRRNLPTQLSGGQQQRVAIARAL
                     AGKPQILLADEPTGALDSKTGKEVMGILQELNRAGNTIVMITHDPTIASYGTRSIRIQ
                     DGKLFHEEATQA"
     gene            23515..24723
                     /locus_tag="U0342_000712"
     CDS             23515..24723
                     /locus_tag="U0342_000712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422072.1"
                     /translation="MNVLQSMKMAWKQLKASKLRSFLTMLGIIIGVASVILLVSLGNG
                     VTQEVDDQMGDLGSNLITVVNSSVNPNDKYTYDEVMKYQNIDGVKSVSPELSGQVNAT
                     FDYKNSSNKVIGTNDQYKAARSLEMKEGRFLLPIDTEYGQKVAVIGSTVASDLFGFGD
                     PIGETIRLNGMPYKVVGVLKEKGASMMGSSDDQIFIPISSAQRLLKDTNVRTIYVETK
                     SAEDVDFVVNTLESRLAIKFGDEKEQEKNASSAQMGPSYQVINQQEILNAFNTISTTL
                     TTALGAIAAISLVVGGIGIMNIMLVSVSERTREIGIRKALGAKKRAILLQFLIESIVI
                     SVCGGIIGIIIGVSGALIFGSVAGISSGITAGTIIFSFVFSLCIGVIFGIAPANKASK
                     LRPIDALRSE"
     gene            25407..25715
                     /gene="spoVG"
                     /locus_tag="U0342_000713"
     CDS             25407..25715
                     /gene="spoVG"
                     /locus_tag="U0342_000713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation regulator SpoVG"
                     /protein_id="HEM2422073.1"
                     /translation="MEITDVRLRRVETDGRMKAISSITIDGEFVIHDIRVIDGNEGLF
                     VAMPSKRTPDGEFRDIAHPINSGTRAKIQEAVLAAYEVADEPAVNEESSADESIVEEN
                     "
     gene            25834..26142
                     /gene="spoVG"
                     /locus_tag="U0342_000714"
     CDS             25834..26142
                     /gene="spoVG"
                     /locus_tag="U0342_000714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation regulator SpoVG"
                     /protein_id="HEM2422074.1"
                     /translation="MQVTDVRLRRVETDGRMRAIASITLDEEFVVHDIRVIDGNNGLF
                     VAMPSKRGVDGEFRDIAHPINSDTRAKIQEVVLAEYERVGEEEATAVTEEESESVSAE
                     "
BASE COUNT         8882 a         4485 c         5569 g         7443 t
ORIGIN      
        1 actaatgaga atcataaaaa ggtaaatcgt taatttaaac tttaacagtt agcgctatta
       61 agtactttta ctcagaaaac ctctaccatc ttcttgttat ttcagctata atgaagtaat
      121 tgaaaactaa attaaaggat taacaaggag gaaaacgatt tgaacattat gattgcgctg
      181 attcctgcat tactctgggg aacagtaccg ctaattatta caaaatttgg cggttcaaca
      241 agacaacaaa cgatgggaat gacactaggg gcactcactt ttgcggtaat cgttttcttc
      301 tttactgacc cagtttatac gcttaaaaca gtaggaatta gttttataac agggtgttta
      361 tggactgtgg gtcaaatgtt ccaactgcaa gcattcaaaa ttatcggtgt ttcaaaagca
      421 atgccgattt ctacagggat gcaattagtc ggaacaacac tttgtggggt aatcttattt
      481 catgaatggg atacgacact tcggattatt ttaggtttta ttgcacttgc actaattgtt
      541 ggcgggattt tcttaacatc ctatgctgaa aaagaagaag atggaactaa cgcattaaaa
      601 caaggtttaa tcacattatt catatctgct tgtggttatg ttggcttagt cgttctaatt
      661 caaggtttca aaatcgatgg aattaacgca atcttgccgc aagcgattgg gatggtttta
      721 agtgcgctaa ttatgacgca tagcggtggt acggaaaaac gtttcaataa acgaacactc
      781 ttacttacta ttccagggat aatctgggcg gctgggaacg ttgcgatggt tcacgctaac
      841 caacttgttg gcgttgcgac tggtttttca ctttcgcaac tcggagttgt tatctcaact
      901 attggcggaa tcgtactttt aaaagaaaag aaaacacaaa aagaaatgtt ttttgttatt
      961 gtgggcgtag ttttagtcgt tctcggcggg attttaatcg gcgttgcaaa aggtgcttaa
     1021 ttaattattt cgtttagcgc gaaaaatgat ataatgatac taattgtttt atttttaagg
     1081 agggaattgt gttgcctgaa gagaaaaata cgttttatat taccacacca atctattatc
     1141 caagcggaaa agcgcatatc ggccatgctt atacgactgt tgcgggggac gcgatggctc
     1201 gttataaacg cttaaaagga tatgatgtgt tttacttaac tggaacagat gagcacggtc
     1261 aaaaaatcca agcaaaagcg aaagaacgcg gaatttctga acaagaatac gtggatgaaa
     1321 tcgcagaagg tttccaagaa ctttggaaaa aactagaaat ttctaatacg gattttattc
     1381 gtacaacaca agaccgtcat aaaacatcgg ttgaaaaaat ctttgaacaa cttttagaac
     1441 aaggcgacat ttacttaggt gaatacgaag gttggtactc tgtttctgat gaagaatact
     1501 ttacagaaac acagttagaa gaagtatata aagatgaaaa tggtaaagta atcggcggaa
     1561 aagccccaag tggcaatgaa gtcgaactag tgaaagaaga atcctacttc ttccgtatga
     1621 gcaaatatgc ggaccgttta gtagaatatt ataattccca tccagaattt atccttcctg
     1681 aatctagaaa aaatgaaatg attaataatt tcatcaaacc tggtttggaa gatttagctg
     1741 tatctagaac aacttttgat tggggtatta aagttcctgg caatccaaaa cacgttgttt
     1801 atgtatggat tgacgcgctt tctaactata ttactgcgct tgggtataat acggacaatg
     1861 acacgaaatt ccaaaaatac tggcctgctg atgtacaaat cgttgggaaa gaaatcgttc
     1921 gtttccacac gatttattgg ccaattatgc tgatggcact agacttacca cttccaaaaa
     1981 tggtgttcgg ccacggctgg attctaatga aagatggtaa aatgtctaaa tccaaaggga
     2041 atgtagtaga tccttatatg ctgattgacc gctacggcct agatgcgctt cgttattact
     2101 tattacgcga agttccattt ggttcagatg gtttatttac accggaagac tttgttgatc
     2161 gtgtgaactt tgatcttgcc aacgatttag gaaacttact taatcgtaca gtagcaatga
     2221 ttaataagta ctttgatggc gaaattccgg cttatcaagg caatgtaaca gaattcgatc
     2281 aaaccttagt ggatttcaaa aacaatgtgg tgaaggaata tgaaggtagc atggatcaca
     2341 tgcaattctc tgtagcttta aaccaactgt ggtcactaat ttctcgtaca aataaatata
     2401 tcgatgaaac cgctccatgg acacttgcca aagacgaaga taaacgcaca gaacttgcga
     2461 gcgtaatgac tcatttagca gaaaacttac gtattatcgc agtgcttttg caaccattct
     2521 taacaagaac tccaggcgaa atcttcttac aactaggttt acaagaagaa aacttgaaaa
     2581 aatgggatag catctatgga tacggtgaaa ttccagctgg cacaacagtg gtgaaaaaag
     2641 gtacgccaat tttcccaaga cttgaggcag aagtagaagt tacttatatc caagatgaaa
     2701 tgaaaggctc tgcgccagct cctgccaaag aagcggcgga agttgaagcg cttgaaacac
     2761 cgcaaatcgg cattgaagat ttcgataaaa tcgatcttcg tgttgcagaa gtaaaacaag
     2821 tagataaagt gaaaaaagca gataaacttc tttgtttcca attagactta ggggaaggaa
     2881 aactgcgcca agtgctttca ggcattgcag aattctatca accagaagaa ctaatcggca
     2941 aaaaagttat cgtcgtttct aacttaaaac ctgtaaaact tcgcggacta atgagtgaag
     3001 gaatgatact ctcaggcgaa aaagatggta agctaagtgt aatcgaagca agtagcgcac
     3061 ttccaaatgg tgcaaaagta aaatagtaaa aacgagtcct aattcatttg agttagggct
     3121 cctttttttc gcctaaaaaa acttttaaaa aaagattgca tattgcaaac gattacaata
     3181 taatgtaact atacttactt aattcattga acgaagtaag tggtcggaca gaagtaaagg
     3241 agcttgaaaa tggatatctt aagaaaaggg aataaagact taattaaaga cataaaccgc
     3301 tacaccgtgc tgaatttaat ccgtgaaaaa ggagaaatca cgcggactga gatagccaaa
     3361 aaatgcgatt ttgggatgtc tacattaacg tatattttag atgatttaca gcaagaaggc
     3421 attattttgg aaggtgccga aacatcatct actggaggca gacgtgccaa gttagttaga
     3481 tttaataaag attatggatt tgttgttagt gtcaaagttg aagaggaaca acttcttttt
     3541 gcgttgaccg atttaaatgc agaaatcatg gaaaatactt ctataccatt ttcctcagag
     3601 aaaaaaccag aagaagcgat tgagttaatt gctaaaaatg tgaaaaagat gtgtgaaaac
     3661 agagatatga accatttgct aggagttgga attgcgattt ccggcctagt taatcgtaga
     3721 aaaggaacag ttatccgctc tactatgtta gggtgggaaa atgtcgcttt agaagcaatg
     3781 ctacatgctt acttcccaga tattccagtg tacgtagata aaaatataaa ctgctacaca
     3841 ctcgcggaac tatggttagg tgaaggaaaa caatcaaata attttgcaac agtttccgtt
     3901 ggagctggac ttggtttatc cgttgttatt aatcgtcaaa tttattatgg tgcacagggt
     3961 ggagccggtg aatttggaca tacaacgatt caaccgggcg gatacaaatg tcactgtggt
     4021 caaaaaggat gcttagaaat gtacgcatcc gaattttatt tccgaaatcg tggcgaagaa
     4081 ttaaaagaag cttatccaac atcagaatta aaggattttc attttgataa agtagcaaaa
     4141 agtgctcgag ctggagacga aatggcgacg gaacttatgg gtaaaatggg tgaatattta
     4201 ggatacggga ttcgaaatat cattaatacc ttcaatccag aaaaagttat cattgtcggt
     4261 gaaggtttgc accatagaga cttattctta actaaaattg atgaaattgc ttcacaaaac
     4321 tttttttcag gggctggctt tgaaacggaa attactacaa cttctttaga ggatcctgca
     4381 tggttacaag gtgcggcttt actagtcatt caccaattat tccaagtgcc aatctatgaa
     4441 gaagaacaaa cgttactacg ttaaaaagaa cataaactat ttcaggaggt tatttttaca
     4501 tggttggtat gactagaaag aaaacactct tttggctatg catattcttg ctacccaatt
     4561 tactaggttt tctcattttt attgcaatcc caatccttgg ctcgcttggt attagtttta
     4621 ccgattggga cttagtgagt actattcact ttactggatt tgaaaattac aaaaggctat
     4681 ttaatgaccc agagttttgg aaatcgttta gaaatacaat cacgttcatc atcggttatt
     4741 tgcctagtgt aatgattctt ggcctagcgt gtgccttgat gttgaaccaa aaaatcaaac
     4801 taagaccatt tttccgagca gtgtacttct tacccgtaat cacttcatgg gtagctgttt
     4861 cactcgtttg gaaatggctg ttcaatcctt catacggttt gatcaattac ttcttatctt
     4921 taattggtat tgcagggccc aactggttaa cagatccaca aacggcgatg attgcagtta
     4981 ttattactag tgcgtggaaa gatattggtt tcgttatggt actattcctt ggtggattgc
     5041 aaaatatttc accatcgtat tacgaagctg ccaatatgga cggagcatca aaacttcgcc
     5101 aattattctc tattactatc ccgcttctta ctcctactac attctttgtg acgataattt
     5161 cgcttatcaa ctcattccag gtgtttgacc aagtgatgat tatgacagaa ggtggtccaa
     5221 gtggagcgac aatgacccta gtccaaaata tttacaacca tgcatttaga tacttcgaaa
     5281 tgggctatgc ttccgcgatg agttggatat tgtttattgt tattttcatc attacaatta
     5341 ttcaaaataa acttcaaaaa aggtggtcca attactaatg aaaacagaaa aaagtggttc
     5401 accaaaatgg caactattta aaaatattct tacctataca atcatctgtc ttggtggaat
     5461 tatcatgctt atgccgtttg tttggatggt atcaactgca ttcaaaacag gcgcagcgaa
     5521 catggtatta ccgccgcaat ttattcctaa agaaccgaca actgcgaact tcactcaagt
     5581 atttgaaatg ttcccaatgt tgcgattttt agttaactcc gtggtcgttg cagttgtaac
     5641 gacacttggt caaatgctgt tttgttcaat ggcagcgtat gcttttgcca gaattccttt
     5701 ctggggtcgc gataaattat ttttacttta cttagcaaca atgatggtgc cagctcaagt
     5761 tacaatgatt ccgcagttta tcttgatgaa acaatttggc tggttggatt cgtatgctgg
     5821 tttgattgta cccgcactat tcagcgtttt tgggacattc ttattacgtc aagcattcat
     5881 gggaattccg aaagagctag aagaagctgc attcatggac ggtgccaatc attttactat
     5941 tttccgaaaa gttatcttac cacttgcaaa acctactttt gcgacactcg gaattttaac
     6001 ttttatgcaa tcttggaaca gttatttatg gccattaatc gtgacaagtt cacaagaaat
     6061 ggcaacttta cctttaggat tatctctttt acaaggtaga tatggaacga attatggctt
     6121 aatgatggcg ggtgtactaa ttagtgttat cccgattcta gcagtgtacc tttttgctca
     6181 aaaatatttc atccaaggaa tggcaatgag cggaatgaaa gaataaaaaa ccaacaaaaa
     6241 aggagtgtta caaatgaaaa aaggtttatt attgttaatg gtagttgtac tgtctgtatt
     6301 tggtctttcg gcttgcggcg gtggcagtag tagtggcgat aaaacagaaa taacgtatta
     6361 tcaattctct gcaccagctg atggaaaagc acttgatgaa atggtaaaag aatttgaaaa
     6421 gcaaaacccg gatattaaag taaacgttca aacaatcgca tttaacgact atttcactaa
     6481 actacaaaca caaatcgcag gtggagatgc tccggatgcc tttgaactta actacgaaac
     6541 attcatgcaa tatgctgaaa aaggtgtact tgcagattta acaagctata tcgaaaaaga
     6601 taaagatttt gatccatcta cacttaacaa acaagcctac gatgctttca aatatgatgg
     6661 caaacaatac ggtatggtag aaagtttctc caacgttgta acaatttaca ataaagacct
     6721 ttttgataaa gccggcgttg aatatccgac agctgactgg acttggaaag acgaagaagc
     6781 ggcagcaaaa aaattaacag atgctaaaaa taaagtttgg ggaacttccc aaccagtaac
     6841 aatgaacgaa ttctacaaag tagcagcgca aaatggtggt tcgattttca acgaagactt
     6901 aacgaaaaca actatcaaca gtcctgaaaa tgtggcagca ttaactcact taacaaatga
     6961 agtaacagat tcaaaagtgg cgccttcacc agctgattta tctggccaat taccagaaga
     7021 tttatttatg aatggtcaaa tcgcaatgct tcacaccggt atttggttgt tcgatatgtt
     7081 ccaagatgct ccgttcaaat gggatgtaca agtagaagca ggaaacacgc aaaaagcaac
     7141 tcacttcttc gcaaacggca ttggtgtttc taaagactcc gataaaaaag aagcagcttt
     7201 caaattcgct tccttcatga gcgcgaacga agaagcagcg aaaatcagaa ttgataataa
     7261 ctgggaactt ccagcgactg aaaacaaaga gattttacaa ccatatttag atgcaactcc
     7321 tccagataac agagaagcag tattcgaatc tctacaatat atggtattac ctccagttgt
     7381 aaaagattgg aacaaaatca gtgattatac aaactctgaa ttcgaaaaag tattaaatgg
     7441 cgattctact ccagaaaaag cactgaaaaa cagcgaagac aacatcaaca aaacaatggg
     7501 atttaaataa gtaaaacgag tggcagggac gtttgtaagt atctttacaa attagactgc
     7561 cactttagta tatccaagaa aggaaataga acatgtctaa attcacaaaa ttaatgcagg
     7621 gttacttgca tttaatagaa ggaaaaaacg aaaaaatcaa accaatcctg ctggaaacaa
     7681 aacctaactt tacaactgat tcagtccttg aaaccgcttc ttggctatgg cttagcagta
     7741 aaatcaatca ttatgataga gaagaagtag agccagtaat tgcattttta gttgaaaact
     7801 ggaatcgtcc tgaaaagtct atttggggtt cagctgaaaa tgatatttat ttagcaacta
     7861 tttcaagtgt atactctgca ttattagatg tgaaaaacac ttttccaaaa ccggagttac
     7921 aacaaacgat tacaattatc cgcgactatt gttttgataa tttattaaaa ggcgatagca
     7981 ttcttactgg ttttaacacg cggaaagtgt caaccgacca gcttttatcc gtgcttccgt
     8041 ttggtctatt ttcgcctgaa gatcttgtaa tggtggcggc tgttggcaaa atggaacaac
     8101 aattagtgca agatgatggg gtattgcctt attcaggagc accaagagtt aattcctttg
     8161 caacggctct aatggcgcta tatttcttag aaaaaagtga ccaagataaa gctttacact
     8221 atttgaatat ggcaatgaag atggaagata atgacgaact tggcgcgatt tttattgaaa
     8281 ttaaccaagc attccgggcg atggaaagtg aagtgacagc gcatatttca cacgatcctt
     8341 ttgggcatga aaatcgctat gagcaacagt taactgaacg cacgccacat tatcccgaaa
     8401 cagaaatgca tttttcggct gcgtgtgaag ttatttctga agtcgaacca atccaagtcg
     8461 aactcgtctt aaaagagaaa gactggacca ttctatgtga gaagaaagaa aaaaatgatg
     8521 tccaaatctg ggaagcgctc gttccaccgt tagaagaagt tggcgagtat acgtattatt
     8581 tccgggcaac aatgaaagac caaaccactt tgacatcaga tgattataca gtcgaaccaa
     8641 tttggaaaca ctggtcagag gaagcggcag tttgtgaaac agagcaaggc ttaatggttt
     8701 tatttaaaga aaatccatca agtatcatcc cggtcgagtt cgccgcgaaa tcagatgaac
     8761 ttgtaatcgg attaaaacct tcatttgaag cgagcaatgt taaaacaaaa tcatccggcc
     8821 aattgaaaaa agatgattta gagattatcg tttcaaacaa tccagtgcgt ctcgaagtac
     8881 attttaaagg caacttaatt ctagaatcgc ataaaattta cccagcgtta cagtggtata
     8941 cagataaggc tggcgcaatc aacaaagtga aactgcattt agatgccccg aaagaagaag
     9001 agtattacgg cttcggtgaa cgatacaatg cattaggtca gcgcgggaat gtgcttgatt
     9061 gttttgttta taatcaatac cgtgatcaag gaacaagaac ctacatcccg atgccgtttt
     9121 atcatacgaa tcgtgattat agtgtgttcg ttgataccgc tcgttacaca agttttgatt
     9181 taggtaacca actagcggac aagcatacaa ttacagtaga aataaatggc tgtgacacag
     9241 atatttgtct tttaatggga gatattcgta gtgcagtagc aaattatatg aagaaaactg
     9301 ggaaaccggc gatggtgcca gtttgggcgc ttgggccgtg gatgtctagt aacaactggg
     9361 accgtgaatc tgtcgttcga acagaagtgg aaacaacgca agaattgcaa atcccatcaa
     9421 ccgttgtcgt gttagaacaa tggagcgatg aagcgactta ttatatgttc aatgacgccg
     9481 aatatgacga aaaagcccca tctgaagcat ataattacga tgaaattaga ttcccttcat
     9541 ggggtagatg gccagatcca aaagggatgg ttgactatat ccatgacaac aaaatgaagt
     9601 taattctttg gcaaattccg attcaaaaat acttaaatcg ccaacaacac ccactaaaag
     9661 accgcgaaga agcctatatg attgaaaaag gctatgtggt gaaaaatccg gatggctcgc
     9721 cataccgtat tccagaaaat tggttcacag aaagcttgat tatggatttc tccaatgaag
     9781 aaggaaaaaa atggtggttt gacaaacgac aatacttgat tgatattggg gtcgatggct
     9841 ttaaaacaga cggcggcgaa ttcgtctttg gtgaaggttt gcaatttgct gatggtagac
     9901 gtggtgatga aatgcgtaat ctttatccaa atgactatgt ggaagcttac taccaatttg
     9961 cacaacaaaa tgatggcatg acatttagtc gtgctggcta cactggcgcg caaaacttcc
    10021 cggcgcactg ggctggagac gaacgttcca cttttgatgc atttagaaga tcgctcattg
    10081 ctggactttc cgctggattt tcgggaattc cgttttggag ttttgacttt gcaggtttta
    10141 acggcgatat tccgacggct gagctattca ttcgttctgc tgaaatggct actttctgcc
    10201 cgattatgca gtatcatgct gaaagtaaag cggaatttaa tcaagaccgg acaccgtgga
    10261 acattgcttc acggactggt gacgactcgg tcatccctat ttaccgccat tttgcgaatg
    10321 ttagaatgaa tattttacct tatatttata atgaatcatt aaaatgtgtt gaaactggct
    10381 tgccaatgat gcgtgcgctt ctgctggact ataaagaaga tccgcgtgtt tctgatatgt
    10441 atgaccaata cttattcgga gaagcaatgc tgatcgcacc agtaattgaa gacggcgtgc
    10501 gctccagaga agtttatctg ccagaaggaa cttggtatga tttctggaat ggaacaaaag
    10561 tgaacggacc aactttacga aaatgcaaag cggataaaga agaaattcca gttttcattc
    10621 gtggtggaaa agcagtgcta tgtaatgtgg acgctacatt gaaactcggc tcatgggttg
    10681 gcaacacagt ggaagaatac gatacaccac tacttaaaat ttatgtggac ggtgatttca
    10741 cagaagaaat gacggatcac ttatccgaaa aatggctagt aaaagtaacg gaaaatgcgg
    10801 acgaagtagt tgtttctgtt caaacaaaca caccggcata tgaagttgaa gtaatcggca
    10861 cgaccaaaaa agtacaaata aagaaaggga gataatgatg gatgcttcca caagttttgc
    10921 gattctacca tctaatgtaa aacaaaaaac agctttcgaa agaaaagtaa atcaagtgaa
    10981 aacggctagt tgggcgaata attgcctgac tggcacactt gatatcggtc agttcagttg
    11041 ctattttgtt aatgaaaaaa ttgctcgcgt gacggtgaac ccatttggag aagtggattt
    11101 aacgccttcg attgctgcga ttcacgatac ggaaaaacaa gcggctaaat ttacagaaac
    11161 aacggacggc tatgagcttc attttgcgga taaagagatt attatttgta aaaatccttt
    11221 ccaaattatt atgaaacaag ctgggaagcg tattttccaa acagaaggat tggcaattaa
    11281 tcgctataaa gaacaccaaa tttcgattca aagcgaacca ggaaccgcga tttttggttt
    11341 aggtgaaaaa acgggtgcct tgaataaagc cggttccatt attagtatgt ggaacacgga
    11401 tgtatacagt ccacataata aagatacagt ggagttatac cagtccattc ctttcatgat
    11461 tgcggatact gcggaaacaa cctatggctt attttatgat aattcgcatc gtacagaatt
    11521 tgatttccaa agttttgaag aaatgtatac gattttagca gaaggtggac aagcgaattt
    11581 atatgttatt tttggtgagg acacgaaaga agttgtcgcg aattacactg atttaactgg
    11641 taaaacacca cttccaccaa aatggtcatt aggttatcat caatcaaggt atagctacac
    11701 ctcggaagaa gaagtggaac ggattgcgaa tacttttaaa gaaaaaaaga ttccgcttga
    11761 ctgtgtattc atggatatac attacatgga tgatttccgc gtattcactt ttaacccgga
    11821 tacttttcca aatggaccag aattgattgc gcgtcttcgg gaacaaaata ttgacgttgt
    11881 accaattgtc gatccgggaa ttaaaaaaga tgttgattat tctgtttatc aagaggggat
    11941 caaacataat tatttctgca ctaaattaga aggttcgatt tattatgggg atgtttggcc
    12001 gggtgtcagt gctttccctg attttctaag tacaactgtt caacattggt ggggcggttt
    12061 acacaaattt tacacagatt taggtatacg cgggatttgg aatgatatga atgagccgtc
    12121 tgtattcaat gaaagtaaaa cgatggattt agatgttgtg cataatctgg acgggaaaaa
    12181 tgtaacccat aaagaagcgc ataatttata tggattgtat atgagtaaag ctacttttga
    12241 agggttaaaa cggcttgtgc caaatgaacg tccattttca ctcactcgtg ctggttatgc
    12301 gggtgttcag cgttattcgg cggtttggac aggagataat cgtagtcact gggagcattt
    12361 ggagatgtcg ctgccgatga ttatgaattt aggattatcg ggcgttgcgt ttaccggtgc
    12421 tgatgttggt ggattttctt cagattgtac gaaagaaatg ttgattcgtt ggacgcaagc
    12481 tggggctttt ttaccatatt tcagaaatca ctgtgtacaa gatagtattt atcaagagcc
    12541 atgggcgttt ggcgcggatg cagagaaaat tgtgaaacaa tatattgaat tgcgctatgc
    12601 ctttttaccg tatatttata cagaattcca aaaaacggca gagagtggtt taccgctcgt
    12661 tcggccgctt tatatggagt ttaaagatga acgcgattta attcaagtga atgatcaatt
    12721 tatgctaggt gaaaatatcc tcgttgcgcc aatcgttcgt gaaggccaag tgaagcgtct
    12781 agttcgtttg ccaagagggc tttggtttaa ttattggaca aaagagcagt tcgtgggcgg
    12841 cgactatatt atcgcagacg cgccgattga taccatgcca atttacatta aagcggggac
    12901 aattctgcca gttggtagca gcgttcaaaa tacaaaagag acgcaagatt tgacattaga
    12961 agtttactta gatggcgacg tagcaagcgg ttatgtgtat aatgatgatg gtaaaagtta
    13021 ccattatgaa agcggcgcag catccaaaac aacactcaca gctactttca aaaatggcga
    13081 agtactaata aatgctaccc atcaaggtga agcaaactta caacataaag taactactat
    13141 acaagttttt ggagaaaaaa cagacaaaat tacaagggcg ggaatttaat ctatgaaaga
    13201 aaaagattgg tggaaaaaaa gcgtagtgta ccaaatctat ccaaagagtt ttaatgattc
    13261 aaatggtgat ggagttggtg atattcaagg aattatcgag aaattagatt atttaaaaga
    13321 gctaggtgtg gacgttatct ggttgtcccc agtatacgat tcgcctcaag atgacaatgg
    13381 ttacgatatt cgcgattatc aaaaaattta cgaagagtat ggagatatgg cgacttttga
    13441 tcaattactt caaggtttac acgaccgcga aatgaaactt gtaatggatc ttgttgttaa
    13501 ccatacttct gatgaacaca agtggtttga ggaatccaga aaatccaaag acaacccgta
    13561 cagagattac tatttctggc gcgaggaaaa cgaaatcaat aactggggct cgattttcag
    13621 cggtccagca tgggaattgg acgaaaaaac aggtgagtac tatttacacc tgttctccaa
    13681 aaaacagcct gatttaaact gggaaaaccc taaattacgc caagatgtat ataatatgat
    13741 gaaattctgg ctagataaag gcattgatgg cttccgcatg gatgtaatta attttatttc
    13801 caaaaatact gatttcccag atggtccagt accagatggt caaatttatg gcgatgctgg
    13861 caatgatttt tgtaatggac cgcggattca tgagttcttg caagaaatga accaagaagt
    13921 tacttctaaa tacgatgtga tgactgttgg cgaaatgcct ggtgctagta caaccgacgc
    13981 gcaaatttac acgaatccag caaataatga agttgatatg atttttacat ttgaacatat
    14041 gaacttagat tccgatggcg acaataaatg ggatctaaaa ccaatctact taccagattt
    14101 aaaagaaaat atgtctgaat ggcaagtggc gcttcaagaa aacggttgga atagcttata
    14161 ttggaataat catgaccaac cgcgtatcgt ttctcgtttt gggaatgaca atcgtttccg
    14221 cgttcgttca gcgaaaatgc ttgcaacttg tttgcatatg atgaaaggaa cgccatatat
    14281 ttatcaaggt gaagaaattg ggatgacgaa tgttcatttt gaaacgctag atgattaccg
    14341 tgatatcgaa acgctaaaca tgtacaaaga gcgtaaggag caaggacaca gccatgaaag
    14401 catcatgcag tcgatttaca caaaaggccg tgacaatgcg agaacgccgt accagtggga
    14461 taatagcgag aatgctggct tcacaaccgg aacgccttgg cttaaagtca acccgcgcta
    14521 tacagaaatc aacaacgaag aagcgctgaa aaacccagat tccattttct actactacca
    14581 aaatcttatt aagttacgaa aaacgactga aatcatcaca actggtaatt atcgtttgtt
    14641 attacctaaa gatgaagcga ttttcgcata tgaacgctac acagaaaatg aaaaattagt
    14701 ggttttatgt aatttcacag aagaagaaca agttatttct gatgaaaaca ttttgaacga
    14761 aatccaaaaa ggttccgtgc ttgtaaacaa tgttcctaat attatagaag gaactttacg
    14821 accttacgaa gcaatcgttt atcaaatcaa gtaaatctca ggaaagccac caattgttag
    14881 gtggcttttt ttgtatgcgt caaaaattat agtataatag aaggaaatga ttttattagg
    14941 aggaattctc ttgctatttg atacgcatgt acacctcaat gacgaggctt ttgatgatga
    15001 tatagaagaa gtaataaaac gcgcacagga aaacgatgtg actcgcatgg ccgtggtggg
    15061 ctttaataaa gaaacaattg accgagcgct tgaattagcc gagaaatatg attttatctc
    15121 attaatcgtc ggctggcatc ccacagacgc tattaccttc acagatgaag atttagaatg
    15181 gctccgcgat ttagcactta cacacccgaa agtagttgct ttaggcgaaa tgggcttaga
    15241 ttatcactgg gatacttcgc caaaagaaac gcaatttgag gtttttagaa aacaaatccg
    15301 tttagcgaaa gaagtgaatt taccgatagt tattcacaac cgcgaagcaa cagaagatgt
    15361 tgttcgtatt ttgcaagaag agcacgctga agaagtaggt ggaattatgc attgctttgg
    15421 tgaaactgtc gaagtaatgg aagcatgtct agcgatgaat ttttacattt cattcggagg
    15481 aacagtcact tttaaaaacg caaaattacc aaaaattgca gctcaagcta taccaattga
    15541 ccgtttatta attgaaactg acgcgccgta tctcgctcca accccaaatc gcggaaaaag
    15601 aaatgaaccc ggatacgtca agttagttgc cgaaaaaatt gcagaactga aagaaatgaa
    15661 atatagtgaa atcgctacgc actcaacaga aaacgcaaaa aaactattta aaataaaaga
    15721 ttgattgtaa cacaattgta atataagggc cagtctgtaa cccaatctta agcttcacgg
    15781 agataaaaat gatgactggg acaaaaaccc ttattttatg cctacgacca gagatgtaga
    15841 aaaatgacac atttctgtta catttgacac tttaaaagaa taatattttt aaaaacggct
    15901 ctatatcaac gttttttgtt aaagtttgcg aaggtgtgaa caatctgtat aaaaaattga
    15961 cagttcttcc ctcccctgta tataatcact agcgaagtag aaaggggaga aatacatgac
    16021 catggaaaac agcagtaacg tagcccaatc atcaaaatgg aaattaccaa tcatgattgc
    16081 aggatttgtt attgtagtag cattggtttt ttatttcgtt ttcgaaggaa ctaaaaacga
    16141 tatcactata gtaaatgctg gtgaaaaaat tgaatcaaga acacatgcga aaactgtttc
    16201 agaagcatta gacgaagcag gtattaaagt aagtgaacgc gatgaaattg cgccaggcaa
    16261 aaatgcagaa atcaaagacg gcatggaaat taaatatttg ccagctcgtc aaattacaat
    16321 aaatgataat ggtactaaaa aagacgtttg gagcacaaaa gcaaacgtag cagacttgct
    16381 taaagatgaa aatattacaa ctcgtccgca agatgtatta aacgtagcat tagatactaa
    16441 attgaaaaat ggccttgaag ttaacattaa tcgtgccatt caactttcct tacaaaacgg
    16501 agcaaaaaaa gatacagtat ggacaacaaa aacaaaagtt agtgatttac tagctgagaa
    16561 aaatattaaa cttgatcaag atgaccgtgt gtcacctgca aaagacagta acttaaaaga
    16621 aaaaatgact gtagaagtta catatgtcaa ttcaaaagca gaaaagaaaa atgaacaagt
    16681 taaattcgaa acagtatata aagaagatga tagcctaaac aaaggcgttg aaaaagtcgt
    16741 tcaagaaggt aaaaacggcg aaaaagttgt tgagtataaa gtaacatttg aaaatggcaa
    16801 agagaaaaaa cgtgatgtca ttaaagaaaa tgtcacttct aaaaaaactg ataaagtagt
    16861 tgtacgtggc acgaaagaaa aagtggtagc aacaccagtt tctaacgtat ctactccaag
    16921 tacaacgtca tcatcatcat caactccatc aggtggtaaa acatacagaa tggaatctac
    16981 tgcatattca ggtggcggta ctacagctta tggtatcaac ctaagtgcca accctggact
    17041 aaaagtaatt gcggttgatc cacgaattat tccacttggc tctaaagttt gggttgaggg
    17101 atacggagaa gcaatcgctg gagatactgg cggcgctatc aaaggaaata tcgttgacgt
    17161 gtatttccca aatgaaagtc agtgctattc atgggggaga agaatggtga ctgtcaaagt
    17221 gttaaactaa attcgtataa aaacgaggct gactcatagg gcctcgtttt ttctttgtcc
    17281 aaaatgtggt atgatatatt tacttatttt ataaaaaagg atgtagtaat tatgaacggg
    17341 aagcctgtaa tacatgaatt tatagtcgta gaaggacggg acgatacaac ggcaattaat
    17401 cgttcagtta ttgctgatac cattgagact aatggatctg ccctttcaca agaaacaata
    17461 gaaaagatta gacatgcaca agaacttcgc ggcgttatta tttttacaga tccagatttt
    17521 cccggtgaaa aaatccgaaa acaaattgac tcagcggtac ctggctgtaa acacgctttt
    17581 atcaatcgcc aagacgcttt gccaaaagca ggtcgtggcc ttggagtgga acatgccagt
    17641 agcgctaata ttcgggaagc actcgaaaac ttccatacaa gtgggacgcc tgcagaaaaa
    17701 caatttatct ccaaagatat tcttattcat ctcggtcttc ttggaggagc gggagcgaaa
    17761 gaacgccgag aaaaaatcgg taatatacta aaaattggct atacaaacgg aaaacaactg
    17821 caaaccagac tagaatcatt tgcaatcagt gaagaccagt tagtagccgc gtgccaaaag
    17881 attatgcagg aggaagaaaa tgagtaaaga tattgcaact cccggaagaa cgacagaaat
    17941 cctaaagaag tatggtttct tatttaaaaa aagtctgggt caaaactttt taatcgacag
    18001 taacattttg acacggatta cagatacagc cgaaataaca aaagaaacaa atgtcatcga
    18061 aatcggacca ggtatcggcg cgctaacaga acaattagca aaaacggcga acgaagtagt
    18121 tgcttttgaa attgatcaac gtttactgcc aattcttgac gatacgctaa gtgcatacaa
    18181 taatatccaa gtggtccacg gagacgtgct aaaagcagat gtggaggaag ttatcgcaga
    18241 gcaattcgcg aagccggatc taccactgaa aatcgtagcc aaccttccgt attacgtaac
    18301 tacaccgatt attttaaaat tactccatga caatattccg gcagattcga tgacgtttat
    18361 gctccaaaag gaagttgcgg accggataag cgcagttcca agcacgaaaa gctacggaag
    18421 cctaacaatc gctatccaat tttacatgga agcagaacta gcctttatcg tgccaaaaac
    18481 tgtcttcatg ccgcaaccga atgttgattc cgcagtaatt catctgaagc gtcgcaaaga
    18541 accattagct gaagtaaacg acgaagaatt tttctttgaa gtaacaagag cttcgtttgc
    18601 tcagagaaga aaaacgcttt ggaataattt agcttcaaaa ttcccggctt taaaaccacg
    18661 caaagacgat ttggtagaag gtctaaatgc tattgggata gacttaatcc gtcgcggaga
    18721 aacgttggat attccggaat ttgctaaatt aagcaacttt ttaggtgatt ttttaaaggg
    18781 aaaataattt ttttcaaaaa aagcgctttc ttagttgaca gttagccctt ccaactgtta
    18841 aaatatttgg ttattgattt cggagccgaa ctatgctata atggatatta gtgaggtgga
    18901 aaataaatgc caaaaaccat tgcaagcatt aagacgaatt tagattctag attaggtaaa
    18961 gcattgacat tgaaagcaaa cggtggtcgt aagaaaacga ttgaacgttg cggtatccta
    19021 gctgaaacat atccatccgt tttcattgtg gagcttgatc aagatgaaaa caactttgaa
    19081 agagtatcct atagttacac ggatatctta acagacgcag tagaacttgt atttacagat
    19141 gataataaag aattagcttt ataataaagc tgaagtagcc gaaccatata gcgtggttcg
    19201 gtttttgcta tacatagaag ttgttttggg ccgctagcta catatttttt ctttcatatg
    19261 atagaataga aaaagagatt ttgaacgcgg aggccaagaa aaatgaaaat aagcattaca
    19321 gcaccagcta aaattaatct ttcacttgat gcgctgtaca aacgtgagga cggctatcat
    19381 gaagtggaaa tggtgatgac aacaatcgac cttgctgata gattatactt agaacgctta
    19441 gacgaagaca aaattgtgct ggatgtaaaa gcacacttta ttccagaaga tcgtcgcaat
    19501 ttaatttatc aagcagccct ccttttaaag aagcgttttg acgtaaagat gggtgtgcgc
    19561 attacaattg ataagcacat tcctgtttct gcgggtcttg ctggtggtag ttcagatgca
    19621 gctgcagcgc tcaaaggatt aaatgtcatt tgggaacttg gtctttcaat agaagaatta
    19681 gccgaaatta gttcggaaat tggttctgat atcgcttttt gcgtatacgg cggaacagcg
    19741 ctagcaactg ggcgcgggga aaagatttct gcgttaccta atattcctgg ttgttggatt
    19801 gtgcttgcta aaccgagcat tagcgtgtct accccgacta tctataaaga acttcaagta
    19861 gataacgtag aacacccaga cacacaaaaa atgattgaat ccattaaaaa tggcgattta
    19921 gacgggatat ttgcgtctac aggaaatgta ttagagtctg tgacattaga aaaaaatccg
    19981 caagttaaac gaataaaaga tcggatgtta gcgtttggtg ctgaggcggc cctaatgagt
    20041 ggtagcggtc cgacagtgtt tgcgcttatc aaacagtact ccagagcaaa acgtgtctat
    20101 aacggcttgc gtggcttttg tgaggaagtt tatatggtta gaccatggag tgaaggcgag
    20161 aacgatacaa atataaataa ttaatgaatg agaggggtca aagaaatgaa aattattttt
    20221 aatgcagatg attttggaat tagcccggga gcagtttatg gtattttaga gtcttataag
    20281 cgaggcgttg tgaaatctac cacgcttctt gctaatagcc cggcatttga tttggcagtt
    20341 gaagttgcga aagaaaaccc aggtctcgat attggtgcgc atttgaccct gacgttcggt
    20401 tctccagtcc ttcaaggttt agaaacgcta acggatgatg atgggcgttt ccgcagaaat
    20461 tatacctcac ttgaaaacgg cttagctgat gtagatatga atgaggtgga gcgcgagtta
    20521 actgcacaaa tcgagaaaat tttagatgca ggaatcacta tttctcattt tgatacacat
    20581 cattcaattg agccgctaat ttatcccgta caacataaac ttgcggaaaa atacggtgtg
    20641 agcattcgac gtcattctga tgtttcggac ttcggtgcta taaaaactcc tgacttattc
    20701 gctacggagt tttatgcaga cggtgtatct tttgaaacga ttaaaaaatt agtacaaaag
    20761 catatcggaa cgaatgatgt agtcgaagtg atgactcatc cggcatttat tgatgaaacg
    20821 ttgcgcgaaa tatctagtta cgtagagccg cgcatcaaag aagtttcaat tctaacttca
    20881 agagaactac aagcatattt aggccaacaa gaagtagaga ttattagttt ccgcgattta
    20941 taagagcatg ggcctgtcaa aggatgttta tttggcaggc ttttcgttag gttaaaataa
    21001 taaatgttgt caattttata gaaaacgttt tataatagag aaaatacgga caaaatacgt
    21061 gaaatagctt tttaatatac ggaattttat caaagggaga gagattatga agattcgtcg
    21121 cagtgaacga ttaattgata tgacgcagtt tctattatcg catccgcgaa agttagtgcc
    21181 gcttacgatg tttgctgaac gttatggctc agctaagtct tctattagtg aagatttggt
    21241 tatcataaag aaaacatttg aagacagagg gattggtacg ctcgaaactg ttccgggtgc
    21301 tgctggtggt gtgcaatata tttcgatagc gggaaatgac gatgtgctgg attttgtgca
    21361 tacgctatgt aatagaattg cggaaccaaa ccgtttgctt ccagggggct atttgtactt
    21421 atctgattta cttggagaac cagtaacgct caaagcaatt ggtaaaattt tagcaacgaa
    21481 attcaataac caaaaaatag atgcgattat gactgttgcg acaaaaggga ttccgattgc
    21541 acaagcggtt gctgaacatt taagtgtccc ctttgttatc gtacgtcgtg atagcaaagt
    21601 gacagaaggc tcaactgtaa gcattaacta tgtttcaggt tcatccaaac gaatcgaaaa
    21661 aatggaatta tccaaacgaa gcttagctga aggctctaat gtagtaattg tggatgactt
    21721 tatgaaagct ggaggaacaa ttaatggtat gaaaaatctg ctagaagaat tcaacgcgca
    21781 tttagttgga attggcgtgt tagttgaatc cgaatatgcg gaagagcgct tagtggatga
    21841 ttacgtatct cttgtaaaaa taaaaaatgt gaacatgaaa gaaaaacaaa tcgaagttgt
    21901 tgatgggaat tactttaata gttgattcta aaccctggaa aatattctgg ggtttttctt
    21961 ttttgggggc gaattgctac taaaaacaaa tcagtcttcc gatgtacttc actcagttaa
    22021 cttttatggt agaatgaatt ctatcgttac tacataaaat tcaaggcttc tagactttag
    22081 gagcagaagg agaacattca tgaaaaagtg ggttaaatgg ttaattgtta tcgtaattat
    22141 cgcagtagta gccgttggtg cggttttctt gctgtcgaaa aatagtggct ccgtaacaca
    22201 agaaaaatta gttacagcca aagtaaaaca aggagatatg aaaatcaatg ctacaggaac
    22261 aggcgcgatt tctccggtaa acacacaagt tccagattac gatgaacttc aattagtagc
    22321 gcaaatggac gaacttgata ttcctaacat caagaaagac caagaagtaa aagtcacagt
    22381 aacagcacta cctgacaaaa cttatacagg aaaagtgaaa gaaatcgcag aacaaggtca
    22441 agtacaaaat ggtgtgtcta gcttctctgt aatcatttct cttgataaaa cagacgattt
    22501 aaaagcgggt atgactgctg atgcttccat tttagtaaat gagaaaaaag atgcactata
    22561 cgttccaatt gaagctgttc aaaaagacag tgacgacaaa tattacgtat tagttccaga
    22621 agaaaaagac aatgggaaaa cgaaaaaagt gaagaaattt gtagaaactg gtcttcataa
    22681 tgaagataat atcgaaatca ctaaaggtgt taaaaaaggc gaaaaagtaa tccttcctac
    22741 acaagaaact tctacggttc ctggtgctcc tagctaagtt ttttgtaagt acaaatcaga
    22801 caaattgtat gaaggaggga taaacatgcc aaaaccgcta attgacatga aaaatttaac
    22861 aaaaacgtat acgctaggcg gagaaacttt taaagcatta gacgatgtta cttttaccgt
    22921 tgagcaaggc gagtttttat ccatcgttgg tccgtccggt tccggtaaat ccactttaat
    22981 gaatatgatt ggttgtttgg atgttccgga tgaaggcagc tatcaccttg atgatgtaga
    23041 tgtttttaaa ctgagcgata ataaactatc cgaaatcaga aataaaaaaa tcggctttat
    23101 ttttcagcag tttaatttgc ttccaaaatt atctgccttt gaaaatgtgg aactaccact
    23161 aatttatgca ggactaagtg tttctgcacg agaaaaagcc gcaatcgaat gtttagaaaa
    23221 agtaggctta cttgaaaaac gtagaaactt accaacgcaa ctttctggtg gccaacagca
    23281 acgtgtggct atcgcaagag cactcgccgg caaaccgcaa attttgctag cagatgagcc
    23341 aactggtgcg ctcgattcga aaacaggtaa agaagtaatg ggaatcctac aagaattgaa
    23401 tcgtgctgga aacaccatcg ttatgattac gcatgatcca acaatcgcct catacggtac
    23461 aagaagtatc cgtattcaag atggtaaatt attccatgag gaggcgacgc aagcatgaat
    23521 gttctccaaa gcatgaaaat ggcatggaaa caattaaagg caagtaaatt aaggtctttt
    23581 ctaaccatgc taggtattat tattggtgtc gcatccgtta ttcttttagt atctctaggg
    23641 aatggtgtaa cgcaagaagt tgatgaccaa atgggcgatt tgggttcgaa tttaattaca
    23701 gtagttaata gctctgttaa tccaaacgac aaatatacgt atgatgaagt aatgaaatat
    23761 caaaacattg atggagtcaa aagcgtttct ccagaattat ctggacaagt caatgcaact
    23821 tttgattata agaattcaag taataaggtg ataggcacga atgaccaata taaggccgcg
    23881 cgtagcctag aaatgaaaga agggcgtttc ctactaccga ttgataccga atatggccag
    23941 aaagtagctg taataggctc tacggtagca agtgatctat ttggttttgg ggatccgatt
    24001 ggcgaaacca ttagattaaa cggaatgcct tacaaagttg ttggtgtctt gaaagaaaaa
    24061 ggcgcgtcta tgatgggatc gagcgatgac caaatcttta ttccgatttc ttccgctcaa
    24121 aggctcctaa aagatacaaa tgtccgtaca atctatgtag aaacaaaatc tgccgaagat
    24181 gttgattttg tagtaaacac actagaatca cgtcttgcga ttaaatttgg tgacgaaaaa
    24241 gaacaagaaa aaaatgcgtc atccgcacaa atgggaccat cttatcaagt cattaatcaa
    24301 caagagattc tcaatgcttt caacacgatt agtacaacgc taactactgc gcttggtgcg
    24361 attgctgcta tttcacttgt tgttggtggt attggaatta tgaatattat gctagtttct
    24421 gttagtgagc gaacgagaga gattggtata agaaaagcgc tcggagctaa aaaacgagcc
    24481 atcctgttac aattcctaat tgaatccatt gttattagtg tctgtggtgg gattatcggt
    24541 attattatcg gggtctcagg agcgctcata tttggctcag tcgcaggtat atcgtcagga
    24601 ataactgcag gaaccattat cttctccttc gtattctcac tatgtatcgg agtgatattt
    24661 ggtatcgcac ctgctaataa agcttcgaaa ttaagaccaa ttgacgcatt aagatccgaa
    24721 taaataaaag aagcctgaaa taagctgttt cgggcttctt tttttactaa aattagctac
    24781 taagttgtct tgtcatctat atttaatctt tttgtcacaa ttaaacgctt tcaatagccg
    24841 gttttggtaa aaaatttaga ataaaaataa aattaattct cgcaacatgc attagaatgg
    24901 ggttttgggg gaatatagtc tctgttggtt aattagagta aatgggatag agaagtataa
    24961 aaatgtaaat atatgagctc tgtaaactca taaaccctat atatattgta tacaattatt
    25021 ttcgaaaaat gataaatcaa ataccgtttt actggtgtta ttgtctgcaa aatagtatga
    25081 tgattacaga ttgatactgt aatggcaatg gttttgaagt ttttatacgt atgatgataa
    25141 ttattgtata caaaacaaaa actagtagga acaatctgta aaagtcaacg attttcaaaa
    25201 aaaaaaactt ttttttagat tacaattcac aaagttgtca aatttagttt tttttattat
    25261 tatgttcata gggaagaatt ttacgtgaat attgcttgct ttataaaagt aattttttct
    25321 atgggggaat ttttctcgag tgtgtactta agttgcatgt gagcattgtt tactagcagc
    25381 gcaactagat taaggtggtg aagataatgg agattacaga tgtgagatta cgacgtgttg
    25441 agacagatgg gagaatgaaa gctatttctt caataacgat tgacggtgag tttgttattc
    25501 acgacattcg tgtcatcgat ggcaacgagg gtttgttcgt agctatgcct agtaaacgta
    25561 cgccggatgg tgagtttaga gatatcgctc atccaattaa ctcaggcacc cgtgcaaaaa
    25621 ttcaagaagc cgttttagct gcttatgaag tagcggacga accagcagta aacgaagaaa
    25681 gttctgcaga cgaaagtatt gtagaagaaa actaaaaaat cctcggttag ggagaacgtt
    25741 gttgggaaca gttgggggat aaatacctaa gattttagct gggataagca gattcttttt
    25801 gaaagaggca aatgggataa ggagtgacta ataatgcaag taacagatgt gagattacgt
    25861 cgtgtagaaa ctgatggaag aatgagagcg attgcttcaa tcactttaga tgaggaattt
    25921 gtagttcatg atattcgcgt tattgatggg aataacggtt tattcgtagc tatgccaagt
    25981 aaacgtggtg ttgacggtga attccgtgat atcgctcacc caatcaattc tgacactcgt
    26041 gcaaaaattc aagaagtagt tttagctgaa tatgagcgcg ttggtgaaga agaagcaact
    26101 gcagtaacag aagaagaatc tgaatccgtt tctgctgaat aatttaaaat tttcaagggc
    26161 tagctgcgtg ctagcccttt ttgtgtacat gaagcatgaa aaaaatcata aatagccttg
    26221 gtcttctatt tttgctatgg tataattaat agcagattat aaaacaggga ggagaatttt
    26281 aaatgatgtt gcaaaaacag gtccatttta gaaaactttt ttgtggcata agtgtaaatt
    26341 cttcttttag taagcaaata aataatcata ctatatctt
//
LOCUS       DASEAA010000020        26364 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.020, whole genome shotgun sequence.
ACCESSION   DASEAA010000020 DASEAA010000000
VERSION     DASEAA010000020.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26364)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26364)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26364
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.020"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            68..901
                     /locus_tag="U0342_000715"
     CDS             68..901
                     /locus_tag="U0342_000715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2422075.1"
                     /translation="MLKINTTTFNPQILYIANCYTNEVRVGENHHHDFLEISIICEGN
                     VIYDIEGERVKLGKGDMLIFNPGVNHYDITEPGMTNAQLHIGFRNFALEGYTRNTFPF
                     KKAFLRKKEEESAILSISKQIIEEKDAEKPGYDLILKAFVMQLIIHVLREATPEQLEN
                     NGVKLSTDEQQKQILVNEIIHYMEKHHTEDVSLSTLSQTMYISPAYISKVFKEETGES
                     PINYLIKIRLTRAEELLKNKDVTVKQAANMVGYNDAYYFSKLFKKYYGFPPSENWRKS
                     S"
     gene            936..2051
                     /locus_tag="U0342_000716"
     CDS             936..2051
                     /locus_tag="U0342_000716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2422076.1"
                     /translation="MEYKKALAFIKSNSILEQEEGTEVIFKQAQETVRGNLDPFLLKD
                     LKQHLGGTNDAIKEAPQEIQMPDFSNLEIATAAALQMRATMGSPNIDLSNGVTTEYRV
                     VEGDYGDIPVRIYRHEEATKPVPAFIFYHGGGFVGGTPAVVENFCKGIAEKLPAVVIN
                     VDYHLAPEFPAPAAPKDCYRALEWVVEQSDELGIDASKIGVSGDSAGGTLAAAVSYMD
                     YEAETNYVGFQALLYPALTLVDEDNDKYQWDISKFGASEETLPLVAPGIIGMNSSGEL
                     LRTAYVRDENPASPIYSPLSAVDKSIYPPTLIASAEFDALRAFADIFAKELRASGVQT
                     KVIVYQGMCHAFIDKYGIFPQAEDVADEIVQMMKEIF"
     gene            2158..2865
                     /locus_tag="U0342_000717"
     CDS             2158..2865
                     /locus_tag="U0342_000717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEM2422077.1"
                     /translation="MGLMKFQLFIQPKLDVLQGNIVEYEILLRDDSAVPRFPLSELEA
                     VLADEELYLAFSEWFSEAFLDVLKKYPNDRFAINIAPQQLFYIETLHWLDKLKSESHR
                     ITVEMTEDIFDVPGHKRHLNANDKNAFILNKIKVIHGLGYHIAIDDVSCGLNSLERVM
                     SYLPYIIEIKFSLIHFKNIPLEDLLLFIKAWANFAQKNKLDFVVEGIETKETMTLLES
                     HGVSIFQGYLVNKPFPV"
     gene            complement(2835..3530)
                     /locus_tag="U0342_000718"
     CDS             complement(2835..3530)
                     /locus_tag="U0342_000718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2422078.1"
                     /translation="MFHTIDFSDIFSSDYSNKISFKKGEIIHSYRDYEEKTPQIGAIL
                     EGTAVLEGPTNEGRWMINALIGQHSLFGMESLLETKTAPELTEYRVRALENGTVLFID
                     REFLLNYLYANPQFFHLILDEVIVRYLFTSKNYKNINQAPIVKVTRILVEIIELLHLH
                     QTEGAIELPVYVTQTFLADYCRSSRARVTEVLEELRESGLLLSKKPITISSHENLLNQ
                     IDSFQTGNGLLTR"
     gene            complement(3749..4201)
                     /locus_tag="U0342_000719"
     CDS             complement(3749..4201)
                     /locus_tag="U0342_000719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM2422079.1"
                     /translation="MYEKLVNKYQDEVTIREEKMPYKLPGLYLNGTIFISKDQSSIEK
                     GCVLVEELMHYKYTVGNITKQETIMDKKQEIFARRKGYEELIPLDDIIACFYLGLREY
                     FEVAEFLEVTEEFLRHTVTHYAEKYGPMYDYGGYFINFGNSIDVYKKF"
     gene            complement(4207..4542)
                     /locus_tag="U0342_000720"
     CDS             complement(4207..4542)
                     /locus_tag="U0342_000720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2422080.1"
                     /translation="MELNKFVGNKIKQYREERGLNQEALAEKLHTTRQTISRYENGDR
                     KANQDVLFELAKIFNKRLDDFFPERNLPPVDERLVTIAAHIDDDVTEEEMRDILAYIE
                     MKKKLHRGM"
     gene            4759..5187
                     /locus_tag="U0342_000721"
     CDS             4759..5187
                     /locus_tag="U0342_000721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422081.1"
                     /translation="MDRKLLKEKQIQLIFQLEQEENRFIRKRLIEELEFFEALGDREK
                     GLLTAEQKLLILTPSEYREYKRTKSDVQISRLIGVSRSSLAEWKRKKGLNRKKPQPVQ
                     QEMIDVLAFHLDKTKDEIGALPASAIECQYEAFVINEAHN"
     gene            5199..5615
                     /locus_tag="U0342_000722"
     CDS             5199..5615
                     /locus_tag="U0342_000722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422082.1"
                     /translation="MQVLVLPENKDINYIKTVQEVKRFFADFERFRMITGLSKKPQLL
                     RNGFLEEPQFAPVAFSARHNKEVILEARWLVEKYTEMLNQMDDLYRTILMECYVERKQ
                     DVAVMMDLPYEIAQFKRIKKRAVLEIATLMGILVRK"
     gene            5895..6284
                     /locus_tag="U0342_000723"
     CDS             5895..6284
                     /locus_tag="U0342_000723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5072 family protein"
                     /protein_id="HEM2422083.1"
                     /translation="MKSLSFMRVLEAVRTMLQEKGGLDVSIVMRDQVEMPTTMIEMID
                     QEEEESQTAWKEKYRFAIHHYTNETDLAGVEMIDTLIQTGFTLPEGYKLIAVRHYGKQ
                     NLVKENTLIHAKTSFEVSICRELKVKI"
     gene            6297..6809
                     /locus_tag="U0342_000724"
     CDS             6297..6809
                     /locus_tag="U0342_000724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major tail protein, TP901-1 family"
                     /protein_id="HEM2422084.1"
                     /translation="MAFEENLYCDYTPGAAKAVAGKDVILAVFNAAGDKLLAVAGQQG
                     LTVNRSKDSIEITSKDTVGGWKSKIGGMKEWSIENDGLYVADAESHKELAKYFESDSP
                     VCVKIINQASKKGLFGGLAIVADYSFEAPFDEAMTYSVKLDGMGALVDLTITEGGDQM
                     PGETPVAPAE"
     gene            6857..7159
                     /locus_tag="U0342_000725"
     CDS             6857..7159
                     /locus_tag="U0342_000725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation and condensation protein B"
                     /protein_id="HEM2422085.1"
                     /translation="MFEVNDTTYILRFNKQKVKTVELTSGISLVAALTANKGILSYQV
                     IETLFVSGLVEEKGLVPVKQKEALEIFDKLVEEQGLISLNVAVIEKLQEDMGFLFR"
     gene            7201..7605
                     /locus_tag="U0342_000726"
     CDS             7201..7605
                     /locus_tag="U0342_000726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine racemase"
                     /protein_id="HEM2422086.1"
                     /translation="MDSEMNHDFDLEKQFAFFVVNFQMSKHDFEELTEVEKNFIMKEW
                     ENKVIFESTMLRNAVLNAEQNLNRKRNSRFIDLHKKRQKKADVNYTVNALQAISDNEA
                     KEGKAWIDRIYGANGLRRPKNKEERGKVNGGF"
     gene            7592..9460
                     /locus_tag="U0342_000727"
     CDS             7592..9460
                     /locus_tag="U0342_000727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422087.1"
                     /translation="MADSKSFTFELNESVLTAQVGRLDEMAMVVERRFSELKMTIEDV
                     GNADPGSKISESLGGLQSGLGTISSAFGQLGSSSEAITSGFGTAVGSVGGITDAFKNL
                     GSSVQNGTLFSSLATGIGGMSTMLGGVSGGVQGITNLASGFMELKKHLGGLMSSIGGV
                     GGIMGKLTSPMGLVIIGIVALVAAFAYLMTTNESFRNTVMSVVTQVAQLFGQLVASLM
                     PIIMQIVTAVMQIGAALMPMVMQFISFFAQLLAQLMPFINMLISMLMPVIMQIVQVVM
                     SLVSALLPSIMTVIQGIMSVIQFLIPIIMQIATVVVQIVVTIISYISKIMPIVMTIIG
                     VIVSIITTIISYVVIIATTIASVIGKIISFIASVITAVIGIVQPIIGFITNIFTTIVT
                     IIGAAFQMVFTVASKIWNAIMTTISGIIEGIKAVITGISTTVSSVFNGVKRIITGVFD
                     GIKSAWGGLTDFVGNIFDGVSSAIQTVVDNVKGFVNVVIRGINGAIGLINKIPGVEIG
                     KIPQLISGTTNFQGGFARMNEGGRGEMVVLPSGSQVIPHDATMKYARESARGNKSILY
                     TSQGADLARVENLLERLLQKNPVIKMDDKVVAEVVSRNQANSFDQYNYTMGGAAYS"
     gene            9457..10275
                     /locus_tag="U0342_000728"
     CDS             9457..10275
                     /locus_tag="U0342_000728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HEM2422088.1"
                     /translation="MSDLFLELNGKVHSLSETFPGLSVQEVSRQSPQLSMETAEIAGT
                     DGVIPGMTQFKPFIFSAKCNLQALDIPDYHLAVREIYEFLFQRDSYYIWSDQMPGIRY
                     EVHPKPVDFSRESDRVGLLTIEFDVFKGYAESRGTSLDPMTFEVDLWQMGMNLSNRDD
                     LFYIFKENTFRVYNAGSDRVNPLMRHELDIAMTANGTPTIHNLTTGESFEYRKALQKT
                     DVLLLNNIYPLVNNRRVGKDTNHGIITLEKGWNDFEIKGVTDVTIAFNFPFIYR"
     gene            10285..11421
                     /locus_tag="U0342_000729"
     CDS             10285..11421
                     /locus_tag="U0342_000729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2422089.1"
                     /translation="MDYVIIQSMDKEVEEILTDIDYGSFSYDYEKNTSRAISFTVNKT
                     KQNAAIFDLVGNEAILTYQGQQFVIKKCTPKSIGGTISKQITAQHICYTVQDHVQYNV
                     KSGRKKYSIQTVLEFALQDNVLGFSYEIQGSFPLVELEDLGNKNGLELVNLCLEEFGA
                     ILFADNKKLYFYDEKSWYVRTEKQFRYLYNTEEVSVDTNTDNLKTEIKCYGKQKENAD
                     KLTGDNKYMAVVTYTSPNEAIYGKRMANAKSDDKITNNDDLLIFAKKQILDVPETALT
                     ISYKGKEPVLERDVWYFIHEPMGFETEVKVTKIKSSHPWSKKFQEIGFSNSRRDMVRI
                     QTQIANQVKKTSVDTNKINSFSSIAMNAYDSRILTEVVGVVDGD"
     gene            11411..11710
                     /locus_tag="U0342_000730"
     CDS             11411..11710
                     /locus_tag="U0342_000730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CCA-adding enzyme"
                     /protein_id="HEM2422090.1"
                     /translation="MATEIRVLKNVDDTVFYPKTHVTAVEGLDSATTTTSGLMPASDK
                     TKLNGIEANAEKNNVTAIDIANWNKKQDAILVSENGSNFKITVTNAGELKATKVE"
     gene            11725..12300
                     /locus_tag="U0342_000731"
     CDS             11725..12300
                     /locus_tag="U0342_000731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-amylase"
                     /protein_id="HEM2422091.1"
                     /translation="MKLDLWKWEMLLQGREFRNKTNDNWQKLMDWSDFISTGLSAIYV
                     YVNKADATLNNKIDTVDKAVNARVNELISGTEQLSEVVDARVDAFGARFPVLRERLNQ
                     EQVIYNKKSTVQFDVNTIINMEKQDIGLLTSKTISEAQTVCFLNISSLNEDADIVLEK
                     TGETSFSENLTSLVFAKIGTNERYQMEPVGA"
     gene            12315..12794
                     /locus_tag="U0342_000732"
     CDS             12315..12794
                     /locus_tag="U0342_000732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422092.1"
                     /translation="MTEIKRMLQTKEDNSKEQFYPETHVAGIVGLTEYVSGQLPTGVV
                     SVNGKAGRVLLDAEDVHAAKKSHNHEVATYTTDGFMSSFDKQKIDQLVSPEAGVTSIN
                     GKTGIVDLFAADLDAAEINHTHAEATTTESGFLAKEDKEKLDAMQIIALETIKEVIE"
     gene            12791..13327
                     /locus_tag="U0342_000733"
     CDS             12791..13327
                     /locus_tag="U0342_000733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422093.1"
                     /translation="MTKIVKMSEKNEHGTLEQFYPETHAEAVKGLVSVSEEEKATWNE
                     KETTAGAEQKANTALNSAKDYVDTIGKGTVIFKGANIMAAGQKYTWNSSKLKFGITLL
                     FSRYDSANNTPLDYYYHSVFLSKAQLAELAGKGLLVPMPSATYGERKYLYVSETEVAG
                     HNDNTNNASWALRQLTVM"
     gene            13346..13768
                     /locus_tag="U0342_000734"
     CDS             13346..13768
                     /locus_tag="U0342_000734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin family protein"
                     /protein_id="HEM2422094.1"
                     /translation="MEVILKIGILGFGAIFGYLFGEVDLLVKVLVCFIVADYISGLLA
                     SGYLGELSSKMGFKGIAKKIAILILVAIAHQIDLILGTHNTTRDAVIFFYLANELISI
                     LENFVRMGMKVPEVLKNLILIFDSKSGDEEEKHDKDMD"
     gene            13749..14477
                     /locus_tag="U0342_000735"
     CDS             13749..14477
                     /locus_tag="U0342_000735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM2422095.1"
                     /translation="MTKIWIDAGHGGKDSGASGNGLVEKNWVLTVAKQLQTELVKAGF
                     EVGMTRTNDTFYELSDRAKKANSFKADLFISLHFNAGGGKGYEDYIYTSVPAATVEIQ
                     KIIHKNIIAKVTKHGMNDRGMKKANFAVLRETAMDAILLEAGFCDSTDALILEKKAYQ
                     TDYCLGIVAAVQEIFGAMVTKYRAGKYLTSDDAISGTNIKGYLEAGTKVFVYKETEKT
                     LNLTTTKGVPGSWVLKTEVNTGKR"
     gene            complement(14515..16869)
                     /locus_tag="U0342_000736"
     CDS             complement(14515..16869)
                     /locus_tag="U0342_000736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-nucleotidase C-terminal domain-containing
                     protein"
                     /protein_id="HEM2422096.1"
                     /translation="MKVNKFFKKTTHVLLVAGLTIGLTAPFTGTTAQAAADTVPIQIL
                     GINDFHGALETASKDASGSPIGGADYLATNLDNATNSFLQANPGATTDNAIRVQAGDM
                     VGASPAVSGLLQDEPTMKVLQKMNFEVGTLGNHEFDEGLPEYKRILDGVSTNKFGPIV
                     EAYPRVKSDMKIVAANVVNKGTNTVAEGFLPYYVKEIDGVKVGFIGIVTTEIPNLVLA
                     NHIKDYDFLDEAETIVKYSAELRGQGVNAIVVLSHVPALSTGNPNTGTKQDVAGEAAN
                     MITKANELDPNNSVDLVLAGHNHQYTNGLVGKTRIVQSYNNGKAFSDVTGELDKTTGD
                     FVTPPDAKITYNTRSVTPNADITAVTEDAKSRIEGVINETIGLANKDVISRDTNPDNK
                     AIDDKESELGNMITDAQRYMANKAGADVDFAMTNNGGIRSDLTTRLANGQNEITWGAA
                     QAVQPFGNILQVVEMTGADILEALNQQYLSNQTYFLQISGLKYTFTDTDDLDHAYKVA
                     SVTTEDGTPLKADQKYKVVINDFLFGGGDGFSAFKKANLVTAIDPDTETFINYIKDQK
                     AAGKVITAQKEGRKVYKSQAEIDKETEDAAIKAIKDATKINKLAEKDKTLTGTTLPGA
                     TVSVQKATANARMALAAGPNATADANGKFSVDVTSLNLKKGDQITTTITDPNGYSTTF
                     QATVQAAATTPPDNGNGGTDNGNGNGNNGGTDGNGGTNNGNGSGTNGGTTTTEDPTTT
                     TPNTSTTGTSANTSLPTTGDTAGFATVFGIVLTTTALYVLRKRS"
     gene            17057..17806
                     /locus_tag="U0342_000737"
     CDS             17057..17806
                     /locus_tag="U0342_000737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EAL domain-containing protein"
                     /protein_id="HEM2422097.1"
                     /translation="MDISSTEIWDAIRRNSYLLYYQPKVDAKTNKIIGFEGLIRLKTA
                     TTILAPIDFFDDIVLLNATREMQDFVAETAIKQINQLGGRFSISINIPAHYVASSTYM
                     TFLHDYVKEHLKYPECLEIEIIERGEITELAIADKNLRKIKDLGVKVSMDDFGKGYSS
                     LAYLRSLPIDIVKTDMSFIALLKTDRKQQIIIRAIVNLCHDLGGKVVTEGVEDMEQVE
                     KLREMKVDYFQGYYFSRPLPMEDIKEKYSFV"
     gene            complement(17876..19384)
                     /locus_tag="U0342_000738"
     CDS             complement(17876..19384)
                     /locus_tag="U0342_000738"
                     /EC_number="1.1.1.205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IMP dehydrogenase"
                     /protein_id="HEM2422098.1"
                     /translation="MAFYFEEPSRTFSEFLLVPGYSSAECVPTNVSLKTPIVKFKKGE
                     ESAITMNIPLVSAIMQAVSDDNMGIALATEGGVSFIFGSQSIESEAAMVSRVKNHKAG
                     FVISDSNISPDKTLQDILNLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRVTRMSPD
                     EKVADFMTPFEKLVTANKSTTLKEANNIIWDNKLNALPLVDDNEHLVHMVFRKDYDSN
                     KENKLELLDSSKRYVVGAGINTRDYEERVPALVEAGADILCIDSSEGYSEWQKRTLDY
                     VRGKYGDTVKVGAGNVVDRDGFRYLAEAGADFVKVGVGGGSICITREQKGIGRGQATA
                     LIDVAKARDEYFEETGVYIPICSDGGIVYDYHMTLALAMGADFIMLGRYFSRFDESPT
                     NKVNLNGTYMKEYWGEGANRARNWQRYDLGGDKKLSFEEGVDSYVPYAGSLKDNVAIS
                     LSKVRSTMCNCGALNIPELQQKAKITLVSSTSIVEGGAHDVVVKDASNNLIK"
     gene            19551..19784
                     /locus_tag="U0342_000739"
     CDS             19551..19784
                     /locus_tag="U0342_000739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="(4Fe-4S)-binding protein"
                     /protein_id="HEM2422099.1"
                     /translation="MDEETLLERGYRKYRGAEVDIYFNTNICEHSGNCVKGNAELFNL
                     DRKPWIMPDNVSKEEAKRVIHTCPSGALQYIEK"
     gene            19796..20074
                     /locus_tag="U0342_000740"
     CDS             19796..20074
                     /locus_tag="U0342_000740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM2422100.1"
                     /translation="MEYKNGENRIYAVNDEGVEVGEVTFVPTGEDMFIIDHTGVDDAA
                     RGQGIAQELVKRAVEKAKTEGKKIVPLCPFAKAEFAKKPEYQEVQAAK"
     regulatory      20211..20313
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            20400..21974
                     /locus_tag="U0342_000741"
     CDS             20400..21974
                     /locus_tag="U0342_000741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2422101.1"
                     /translation="MKKFLLVAVISVFALVLTACGGSGASSDKANGSGKAKDGGSLII
                     GVTGDPEVINPNYASDRVTLTIQQAVYAPLFWEVDGKPALAKSLDISDDNLTYTVKLK
                     DGLTWHDGKPLTADDVVFTVNSILDTKQNSPNRGNFVFDDKPVKVEAVDDTTVKFTLP
                     TVAPAFENTIKTFFPIPKHIFEGVENIEKSDKNKNPIGSGPYKFVEYKTGEYVSLERF
                     NDYFDGKPKLDKVTFRITKDQNAANLALQNGEINLKSIQPSDRNKVEKASAVNIITYP
                     ENRLSYATFNENQPALKSKELRQALSYALDREEIIDAAYGSDEYAKPASSFLTENTKY
                     FTDKVETYDQDIAKAKKLVKESGFDTSQKLTVYYLNNSKSQESIALYLQQQYKEIGVT
                     LDLKPTDPNALSNITLDRKNADYSIALNGYIMGNDPDAYKSLYLSDAPYNYSNYHNKD
                     LDALWEKGAVTADDKERQEIYEKIQNTIADDAVIYPISYDNAVLALDSRYGGQKAATP
                     QPVTMFRDLSKLYLTE"
     gene            22076..23026
                     /locus_tag="U0342_000742"
     CDS             22076..23026
                     /locus_tag="U0342_000742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422102.1"
                     /translation="MLKTIIKRVLQIIPMLFIISIISFALIKLAPGDPVNSFVTPDMN
                     PDDVERIRQSLGLDQPIYVQYFIWLGNLLQGNLGYSIVNSQPVLQQILERIPATLGLV
                     GTSLVLTLLLSIPLGLVAANYENTWIDKVLNGISYIGISIPIFWFGMILIDVFSIQLG
                     WLPSLGMRTIGVDSFWDMAEHAILPVITLTFQGCAAYYRYVRSNTINQLKEEYVLFGY
                     AKGLSKVQIMGHHVLKNSLLPVITLLGMSLPQVITGAFITESIFSWPGMGSLGINAIF
                     QLDYPVIMAITLFSALLLIIGNLLADLAYMIVDPRIREMG"
     gene            23037..23930
                     /locus_tag="U0342_000743"
     CDS             23037..23930
                     /locus_tag="U0342_000743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422103.1"
                     /translation="MRLDFSKKTMQDFERDAEVVHATRERSFWRFMLADRRAVFATSV
                     LILITVACIFAFLSPYDPNALSVQDKLMPPNSSHWFGTDDHGRDYLTRVLYGGRVSLL
                     VGVFAMMIAVVVGTLAGTVSGYFGGFIDNMVMRFLDIFMSIPSFFLLMILNAYLKPGI
                     SNIIIIIGLLSWMEVARIVRAETLTLKEREFILYSKSSGGGFFHIMFKHIIPNAMPSI
                     VVAASLNVATAILTESALSFLGLGVQQPNASWGSMLNNAQGYVGEATYLALFPGLLIL
                     MTILSFNVLGDVLRKGLSRRY"
     gene            24130..24414
                     /locus_tag="U0342_000744"
     CDS             24130..24414
                     /locus_tag="U0342_000744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 domain-containing protein"
                     /protein_id="HEM2422104.1"
                     /translation="MSEIKVKEATLKKHATKLESKGKSTEYLPMKGGNMAYSQANSIN
                     HFRTALFDLVDAVDNFQGVVGTDAKRLKELGVSFTRKDQELERGMGLGGK"
     gene            24415..24783
                     /locus_tag="U0342_000745"
     CDS             24415..24783
                     /locus_tag="U0342_000745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair Rad50 ATPase"
                     /protein_id="HEM2422105.1"
                     /translation="MDAKSQQMETQLQLLKKEQSAAEDFLQDLQRQQNEQEWLAEDFA
                     RVHQEERESLELLREVWQGAESRSFGYYLADLQEEEKQKWHKKIQANQEEHQQKITAC
                     QNNIYQLENQQQDLQKELLQ"
     gene            24780..26087
                     /locus_tag="U0342_000746"
                     /pseudo
     CDS             24780..26087
                     /locus_tag="U0342_000746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246390.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
     gene            26097..26339
                     /locus_tag="U0342_000747"
     CDS             26097..26339
                     /locus_tag="U0342_000747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1871 family protein"
                     /protein_id="HEM2422106.1"
                     /translation="MYEKVEKIINDWDPIELFPLAPKDEYSQEINKIISIVQENHNID
                     MNVLAKGIRKIFIDSFGENLIFKNNEDEIAEKILAL"
BASE COUNT         8467 a         4397 c         5747 g         7753 t
ORIGIN      
        1 ctgtaagcat ggacaatgtt atataattaa aagataaatg taagcgttat aacgaggagg
       61 tgaagtgatg ctgaaaataa atacgaccac atttaatccg caaattttgt atatcgcgaa
      121 ttgttatacg aatgaggtgc gcgtaggtga aaatcaccat catgattttt tggagatctc
      181 gattatttgt gagggaaacg ttatttatga tattgaaggc gagcgagtca agctaggaaa
      241 aggcgatatg ctgattttta atcctggtgt gaatcattac gatataaccg aaccaggtat
      301 gacgaatgcg caactccata taggttttcg gaactttgca ctggaaggat acacgcgaaa
      361 tacgttcccg tttaaaaagg cctttttacg aaaaaaagaa gaagaatctg ccattttatc
      421 tatttctaaa caaattatag aagaaaaaga cgcagaaaaa ccaggatatg acttgatttt
      481 aaaggctttc gtcatgcaat taattatcca tgttttacgc gaagccaccc cagaacaact
      541 tgaaaataac ggcgtcaaat tatctaccga cgagcagcaa aaacagatac ttgtaaacga
      601 aattattcat tatatggaaa aacaccatac agaagacgtc tcgctctcaa cgctttcgca
      661 aacgatgtac attagccccg cctatatctc caaagtattt aaagaagaaa ccggggaatc
      721 accaattaac tacttaatca aaattcgtct tactcgtgca gaagaattac tcaagaataa
      781 agacgttacc gtaaaacagg ccgcaaatat ggtcggatat aatgatgctt attattttag
      841 caagcttttc aagaaatatt acgggtttcc accatcagaa aactggcgca aatcgagtta
      901 gaattccaaa ataagacaga gagaaggaag actggatgga atataaaaaa gctttagcgt
      961 ttataaaatc aaatagcatt ctagaacaag aagaaggaac agaagttatt tttaaacagg
     1021 cacaagaaac agttcgaggg aatttggatc cttttttatt aaaagacctg aaacaacatc
     1081 ttggcggtac gaatgatgcg ataaaagaag cgccgcaaga aatccaaatg ccagattttt
     1141 ctaatttgga aatagcaacg gcagctgcac tacaaatgcg agcaacgatg ggaagtccga
     1201 atattgattt atcaaacggt gtaactacgg aatatcgggt tgttgaaggg gactatggcg
     1261 atattccggt acgaatttat cgtcacgaag aagcgaccaa accagttccc gcattcattt
     1321 tttatcatgg tggtggcttt gttggtggaa cgccggctgt tgtggagaac ttttgtaaag
     1381 gtattgcgga aaagttaccg gcagttgtta ttaatgtgga ctatcattta gctcccgaat
     1441 tcccggcacc agcagctcca aaagattgtt acagggcgct tgaatgggta gtggaacaaa
     1501 gcgacgaact cggtatcgac gcttcgaaaa taggtgtttc tggagatagc gcgggtggaa
     1561 ctttagcagc agcggtgagc tatatggatt atgaagcaga gacgaattat gtaggatttc
     1621 aagctttact ttacccagcg ctaacgttag tagatgaaga taatgataag taccagtggg
     1681 atatttccaa gtttggggca tcagaagaga cacttccgct cgttgcgcca ggtatcattg
     1741 gaatgaacag ctctggcgaa ttactgcgga cggcctatgt tagagacgaa aatcccgcat
     1801 cgccaattta ttctccacta tcggctgtag ataaaagtat ttatccgcct acacttatag
     1861 ccagtgcgga gtttgatgcg ttacgagctt ttgcagatat ttttgctaaa gaactgcgag
     1921 caagtggtgt gcaaacaaaa gtaatcgttt accaaggaat gtgtcatgct ttcattgata
     1981 aatacgggat tttccctcaa gcggaagacg tggcagatga aattgttcaa atgatgaaag
     2041 aaatatttta aagaataatt tgcaggcatt ttccggaatg cctgtttgtt tttggactaa
     2101 attttgcgat tagtactaaa aatgtattag aatagagaag agaaatgaga aaggatgatg
     2161 ggactcatga aatttcagct ttttattcaa ccaaaattag atgttcttca gggaaatatt
     2221 gtcgaatatg aaatactttt acgtgatgat agtgcagttc ctagatttcc tctatcagaa
     2281 ttagaagctg tactcgcgga cgaagaactg tacttagctt tttccgagtg gtttagcgag
     2341 gccttcttag acgttttaaa gaaatatcca aatgatcgat ttgccataaa tattgcgcca
     2401 caacagcttt tttacataga aacactccac tggctagaca aattaaaaag cgagagccat
     2461 cgtataactg tagaaatgac cgaagatatt ttcgatgtcc ccggtcataa acgccacctt
     2521 aatgcgaacg ataaaaacgc atttattcta aataaaatta aagtgattca cggtctcggc
     2581 taccatatcg ccatagacga tgttagttgc ggattgaaca gcctagagcg agtgatgagc
     2641 tacctacctt acataataga gattaaattc tccctcattc atttcaaaaa tataccatta
     2701 gaagatttgc tactatttat taaagcttgg gcaaattttg ctcagaaaaa taagctcgat
     2761 tttgttgttg agggaattga aacgaaagaa accatgactc tactagaaag tcatggcgtc
     2821 tcgatttttc aaggttatct cgttaataag ccgtttccgg tttgaaaact atctatttga
     2881 ttgagtagat tctcgtgcga gctaatggtg atgggctttt tggaaagcag tagtccgctt
     2941 tcccgtagct cttctaacac ttcagttact ctagctcgac tcgaacgaca ataatcagct
     3001 aagaaagttt gcgtgacata gactggaagc tcaattgccc cctctgtttg atgcaaatga
     3061 agtaactcaa taatttccac caaaatacgc gttactttga ctatgggtgc ttgattaata
     3121 ttcttgtaat tttttgatgt aaataaatat ctgacaataa cttcatcaag tataagatgg
     3181 aaaaattgtg ggtttgcata taaataattg agaagaaact cgcggtcaat aaatagaacg
     3241 gtaccatttt ctaatgcgcg aacacgatat tcagtaagtt caggtgctgt tttagtttcg
     3301 agtaaacttt ccattccaaa aagcgagtgt tgaccaatca acgcatttat catccagcga
     3361 ccttcatttg taggaccttc taaaacagcc gttccctcta aaatagcacc tatttgcggc
     3421 gtcttttctt cgtaatctct atatgaatga ataatttcgc cttttttaaa agaaatctta
     3481 tttgaataat cactagaaaa aatatctgaa aaatctatcg tgtgaaacat tatcaaaact
     3541 cctatactaa ggtaaaattg gtatttacca tattacttta ctgctatttg tgttaaaaag
     3601 ataccgaata aaaatcgtgt tcacaattta gacatgaaaa agtcactctt tagcaacaaa
     3661 tttagtggtt ttatcaataa aaacttactt tttcttccct ggagagaaat tcaaccaaaa
     3721 aaagaccctc catagatagg agagtctttc aaaacttctt gtaaacatca atggaattgc
     3781 caaaattaat gaaatatcca ccataatcat acatcggacc atatttttct gcgtaatgag
     3841 taactgtatg gcgcaaaaat tcttctgtta cctctaaaaa ctccgctact tcaaaatatt
     3901 ctcgtaagcc tagataaaaa caagcaatga tgtcatcaag cggtattagt tcctcataac
     3961 ctttacgacg agcaaaaatt tcttgttttt tatccataat tgtttcctgt ttagtgatgt
     4021 tacctacagt gtatttgtaa tgcatcaatt cttctactaa aacacagcct ttttcaatgg
     4081 aagattgatc cttactaata aaaatcgtcc catttaaata aagacctggc aatttgtaag
     4141 gcattttttc ttctctgatt gttacctcat cttggtattt atttaccaat ttttcgtaca
     4201 ataaaatcac atcccgcgat ggagtttttt cttcatctct atataagcta aaatatcccg
     4261 catttcttcc tcggttacgt catcatcaat atgggctgca attgttacca agcgttcatc
     4321 aacaggtggt aaatttcttt caggaaaaaa gtcatctaat cgtttgttga aaatttttgc
     4381 aagttcaaat aaaacgtctt gatttgcttt tcgatcacca ttttcataac ggctaatagt
     4441 ttggcgagtt gtatgaagct tttctgctaa tgcttcttga tttaagcctc gttcctcgcg
     4501 atattgtttt attttatttc ctacaaattt atttaactcc ataataattg ccctccacat
     4561 gtttatggct tcagtatagc acttttagca ccaaaacgga actttttcga acatatttgt
     4621 cggataaagt ttaccagtaa ccaaaatggt gctataatat ttatagagct agaaaataaa
     4681 tgcggctgat tttgcgccaa tagcaccgaa ttggtgacaa tgttactata ttaatttatg
     4741 agatggaagt gggaatggat ggatagaaaa cttttaaaag aaaagcaaat ccaactaatt
     4801 tttcaactag aacaagaaga aaatcgattt attcgaaagc gtttaataga agagttggag
     4861 ttttttgaag cgcttgggga cagagaaaaa ggactgttaa cggcggagca aaagttgctt
     4921 attttaacac caagtgagta ccgagaatat aaacgaacta aatcagatgt gcaaattagt
     4981 aggttaattg gagtatcgag atcgtctctt gcggaatgga agcgaaaaaa aggtttaaat
     5041 agaaaaaagc cgcaaccggt tcagcaggaa atgattgatg tattagcttt tcatttagat
     5101 aaaacaaaag acgaaattgg cgctttacct gcttcggcga ttgaatgtca gtatgaggct
     5161 tttgtgatta atgaagcgca caattaagga gtgataacat gcaggtttta gttttaccag
     5221 aaaataagga tatcaattat ataaaaacgg tccaagaagt aaaacgattt tttgctgatt
     5281 ttgagcggtt tcggatgatt acggggttat caaaaaagcc acagttactt agaaatggtt
     5341 ttctggaaga gccgcagttt gcgccggtag cattttctgc tagacataat aaagaggtca
     5401 ttttggaagc gcgatggttg gtagagaaat atactgaaat gttaaatcag atggatgatt
     5461 tatatcgcac tattttgatg gaatgttacg tggaacgaaa acaagatgtg gcggtaatga
     5521 tggatttacc gtacgaaatt gcccagttta aacggataaa aaaacgagca gtattagaaa
     5581 tcgcaacgct aatgggaatt ttagtaagga aatgatgata ctttcgtgat attttgaaac
     5641 gtcattttac gattaatata gaagtaagct aattgtctag taagcggatg acgataaaag
     5701 ctgcatcaga atgaaggtgc accgattttc tgataataca agaggttgta caagaaattt
     5761 gtttttatga ttatattttt catccgttga cataaacaaa tattctattt tggaaagtaa
     5821 agttcggagg aataaattat caaatgtggt ctcgaccgaa ttttactttc tgtttttaaa
     5881 ggagtgaacg cttggtgaag agtttaagct tcatgagagt tttggaagca gtgagaacaa
     5941 tgctccagga aaaaggcgga ctagatgttt ctattgtaat gcgtgaccaa gtggaaatgc
     6001 ctacaacgat gatcgagatg attgatcaag aggaagaaga aagccaaact gcctggaaag
     6061 aaaaataccg ttttgcaatc catcattata caaatgaaac ggacttagcg ggagtcgaaa
     6121 tgatagatac gcttatccaa acagggttca ctttgcctga aggatacaaa ttaatcgctg
     6181 ttcgacatta cggaaaacaa aatttagtca aagaaaatac gttaattcac gcaaaaacca
     6241 gttttgaagt aagtatttgt cgtgaattaa aagtaaaaat ttagggggaa atattaatgg
     6301 catttgaaga gaatttatat tgtgattata caccgggagc tgctaaagcg gtcgcgggga
     6361 aagatgtaat tttagcagtt tttaacgcag cgggggataa gctattagcg gttgcggggc
     6421 aacaaggtct aactgtaaac cgttctaaag atagcattga aattacatct aaagatacag
     6481 ttggcggatg gaaatccaaa attggcggta tgaaagaatg gtcaattgaa aatgacggat
     6541 tatatgtcgc tgatgcagag tctcacaaag aattggcgaa atatttcgaa agtgatagcc
     6601 cggtttgcgt gaaaatcatt aatcaagcat ctaaaaaagg tcttttcggt ggtttggcaa
     6661 ttgtagctga ctatagtttt gaagcacctt ttgatgaagc gatgacttac tctgtaaaac
     6721 tagacggaat gggtgcgctt gttgatttaa cgattactga gggcggagat caaatgcccg
     6781 gcgaaacacc tgtagcacca gcagaataaa atagagagcc actgaaataa gtggctttcc
     6841 cttaggagga aaataaatgt ttgaagtgaa tgatacaact tatattttac gatttaataa
     6901 acaaaaagtt aaaacggtgg aattaacatc agggattagt ttagttgcag ctttgactgc
     6961 gaataaaggg attttgagct accaagtgat tgaaacgcta tttgtttcag gacttgtgga
     7021 agaaaaaggc ttagtacctg taaaacaaaa agaagctttg gagattttcg acaaattagt
     7081 agaagaacaa ggcttaattt cgcttaatgt agctgttatt gagaaattgc aagaggatat
     7141 gggttttttg ttccgttaaa acagattgaa tttgagtatt ttggtgctga ggacgaagaa
     7201 gtggatagtg aaatgaacca tgattttgat ttggaaaaac aattcgcttt ttttgtagtt
     7261 aattttcaga tgtccaagca tgattttgaa gaacttactg aagtggagaa aaatttcatc
     7321 atgaaagaat gggaaaacaa ggtgattttt gaatctacta tgcttcgaaa tgcagtttta
     7381 aatgcggaac aaaatctcaa tcgaaaacga aattcacgtt ttatcgactt gcataaaaaa
     7441 cgtcagaaga aagccgatgt taattataca gtaaatgcac ttcaagcaat ttccgataat
     7501 gaagcgaagg aaggtaaagc gtggattgat cggatttatg gtgcaaatgg gttacgaaga
     7561 cctaagaata aagaagaaag ggggaaagtg aatggcggat tctaaaagtt ttacatttga
     7621 actgaacgag agcgttttaa cagcgcaagt tggcaggcta gatgagatgg cgatggttgt
     7681 agagcggcgg ttttcagagc tcaaaatgac tattgaagat gttggaaatg ctgatccagg
     7741 ttcgaaaatt tccgaatctt taggtgggct gcagtctggg cttggcacga ttagttcggc
     7801 gtttggacaa ctgggttcta gtagtgaggc gattacatcc ggattcggta ctgcggttgg
     7861 ttctgttggt ggaatcacgg atgcgtttaa aaatctaggt tcaagtgtgc aaaatggtac
     7921 gttattttca agcttggcaa ccgggattgg tggcatgagt acaatgcttg gtggagtatc
     7981 tggcggcgtt caaggaatta caaatctagc tagtggattt atggaattga agaagcatct
     8041 aggcggtttg atgtcatcta ttggtggcgt tggtggaatt atgggtaaac tgacctctcc
     8101 aatggggtta gtaattatcg ggattgtagc gttagtagct gcatttgcgt atttgatgac
     8161 gacgaatgaa tcattccgaa atacggtgat gtcagttgta acacaggttg cgcaactgtt
     8221 cggtcaactt gtcgccagtt taatgccgat tatcatgcaa attgttactg cggttatgca
     8281 aattggtgcc gcgttaatgc cgatggttat gcaatttatt agcttttttg cgcaattgtt
     8341 agcccaatta atgccgttta ttaatatgct gatttccatg cttatgcctg ttattatgca
     8401 gattgttcaa gttgttatgt cacttgtttc ggcactatta ccgagcatca tgacagtgat
     8461 tcaaggcatt atgagcgtta ttcaattttt aattccgata atcatgcaaa ttgcgacggt
     8521 ggttgtacaa attgttgtaa cgattatttc ttatataagt aaaattatgc cgattgttat
     8581 gacgattatt ggcgttattg tttcgattat cacaacgatt attagttacg tcgttattat
     8641 tgcgacgacg attgctagtg ttattgggaa aattattagc tttattgcga gtgttattac
     8701 ggcggttatc gggattgtgc aaccaattat tggctttatt actaatatct ttacgactat
     8761 cgtgacgatt attggtgcag ctttccaaat ggtatttact gttgcatcca aaatctggaa
     8821 tgccattatg acgacgattt ccggaattat tgaaggaatc aaagcagtca tcacaggtat
     8881 ttctactacg gtttcatcag tgtttaacgg agtgaagcgc attattacag gtgtttttga
     8941 cggaatcaaa agtgcttggg gtggtttaac tgattttgta ggaaatattt tcgatggtgt
     9001 ttcaagtgca attcaaaccg tggtagataa tgtcaaaggt tttgtaaacg tcgtaattcg
     9061 agggattaat ggagccattg gtttaattaa taagattcca ggcgttgaaa tcggcaaaat
     9121 accacaatta atttccggta caacaaattt ccaaggtggc tttgctcgaa tgaatgaagg
     9181 cggccgaggc gaaatggtgg ttttaccgtc gggttcgcaa gtaattccgc acgatgcaac
     9241 gatgaaatac gcaagggaaa gtgcgcgcgg aaataaatca atcctttaca cgagtcaagg
     9301 cgctgatttg gctagagttg aaaatcttct cgagcgctta ctacaaaaaa atcctgtaat
     9361 caaaatggat gacaaagtgg tagccgaggt agttagccgt aaccaagcta actcatttga
     9421 tcagtacaat tacacaatgg gaggtgcagc ttattcatga gcgacttgtt tttagaatta
     9481 aatggaaaag tgcattcgct tagtgagaca tttccaggtc tttctgtaca agaagtttcc
     9541 agacaaagtc cccagttaag catggaaact gctgaaatcg ctgggactga tggggttatc
     9601 ccgggaatga cccaatttaa accgtttatc ttttcagcaa aatgtaattt gcaagcactt
     9661 gatattccag attatcattt ggcagtcaga gaaatttatg aatttttatt ccagcgcgat
     9721 agttattata tttggagcga tcaaatgcca ggaattcggt atgaggtgca tcctaaacca
     9781 gttgatttta gtcgagaatc ggatcgtgtt ggtttactca ctatagaatt tgatgtattt
     9841 aaaggctatg cggagtcacg tggcacgagc cttgacccta tgacttttga agtggattta
     9901 tggcaaatgg gaatgaattt atcgaaccgt gatgatttat tttatatttt taaagaaaat
     9961 acatttcggg tctataatgc ggggagcgac cgtgttaatc cactgatgcg acatgaatta
    10021 gatattgcga tgacggcgaa tgggacacca acgattcata atcttacaac gggagaatcc
    10081 ttcgagtatc ggaaagcgct ccaaaaaaca gatgttttac tgttgaacaa tatttatcca
    10141 cttgttaata accgccgtgt tggaaaagat accaatcatg ggattatcac ccttgaaaaa
    10201 ggctggaacg attttgaaat caaaggtgta acggatgtaa cgattgcttt taattttccg
    10261 ttcatttatc ggtaggtgat agatatggat tatgtgatta ttcaaagtat ggacaaagaa
    10321 gtggaagaga ttctaacaga cattgattac ggctcctttt cctacgatta tgaaaaaaat
    10381 acaagtcgtg ctatctcgtt tactgtgaac aaaacgaaac agaatgcagc aatttttgac
    10441 ttggtaggaa atgaagcaat tttaacatat caagggcagc aatttgttat taaaaaatgt
    10501 acgccaaaat ctattggagg aacaatttca aagcagatta cggcccagca tatttgttat
    10561 acagtgcaag atcatgtgca gtataacgtg aaatctggac gaaaaaaata ttcgattcaa
    10621 acggtattgg aatttgcgtt acaagataat gtactaggat tttcttatga aattcaaggg
    10681 agttttcctt tagttgaact agaggactta ggaaataaaa atggcttaga gctagtgaat
    10741 ttatgtttgg aagaattcgg agcaatttta tttgcagata ataaaaagct ttatttttac
    10801 gatgaaaaaa gttggtatgt aaggacagag aagcaatttc gttatttata taatacagaa
    10861 gaagtttcgg tggatacgaa cacagataat ttgaagacgg agataaaatg ttacggcaag
    10921 caaaaagaga atgccgataa gctgactgga gataataagt acatggcggt tgtcacatat
    10981 acttcgccaa atgaggctat ttacgggaaa cgaatggcaa atgctaaaag tgatgacaaa
    11041 atcacgaaca atgatgactt attaattttt gcaaagaaac aaattctaga tgttccggag
    11101 acagcgctta ctatttctta caaaggaaaa gaacctgttt tagagcggga tgtttggtat
    11161 ttcattcatg aaccgatggg gtttgaaaca gaagtaaaag taacgaaaat taaatcgagt
    11221 catccttgga gtaagaagtt tcaagaaatt ggcttcagta attcgcgacg agatatggtc
    11281 cgaattcaaa cgcaaattgc taatcaagtg aaaaaaacga gcgtagatac aaataaaatt
    11341 aattcgtttt cgagcatcgc aatgaatgct tatgattcac gaattttaac ggaagtagta
    11401 ggtgtggtag atggcgactg aaattagagt gttaaaaaat gtagatgata cagttttcta
    11461 tccgaagaca catgtaacgg ctgtggaagg tttggactcg gctacaacta ctacatctgg
    11521 attaatgccc gccagcgaca aaacgaaatt aaatggaatc gaagctaatg cagaaaaaaa
    11581 taatgtgact gcaatcgata ttgccaattg gaataaaaaa caggacgcaa ttttggtttc
    11641 tgaaaatggc tctaatttca aaataactgt cacaaatgct ggtgaactaa aggcaacaaa
    11701 agtggaatag gaaggaggtt gcgtatgaag ttggatttat ggaaatggga aatgcttctt
    11761 caaggtcgag aatttagaaa taaaacaaat gacaactggc aaaaattaat ggattggtcc
    11821 gattttattt caacaggttt aagcgcgatt tatgtctatg taaataaagc agatgctact
    11881 ttaaataaca aaattgatac tgtggataag gcggtaaatg caagggtaaa tgaattgatt
    11941 agcgggacag agcagttaag tgaagtggtc gacgccagag tggatgcatt tggcgcacgc
    12001 ttcccagtac taagagaacg tttaaaccaa gaacaggtaa tttacaataa aaaaagcacg
    12061 gtgcaatttg acgtgaatac tattataaat atggaaaaac aagatattgg gctgctaaca
    12121 agtaaaacaa tctcggaagc gcaaaccgta tgttttttaa atatatcaag ccttaatgaa
    12181 gacgcggata ttgttcttga aaaaacaggc gagacaagct tctcagaaaa tttaacaagt
    12241 ctagtctttg caaaaattgg aacgaatgaa cgctaccaaa tggagccagt tggtgcataa
    12301 aggaggagtg agcaatgact gaaataaagc gaatgctgca gacaaaagaa gataattcaa
    12361 aagaacaatt ttatccagag acgcatgttg cggggattgt tgggttgacg gaatatgtgt
    12421 caggccagct tccgacaggc gtggttagtg ttaatggtaa ggctgggcgc gtgttgctag
    12481 atgcagaaga tgtccacgct gccaaaaaga gccacaacca cgaagtcgca acatacacga
    12541 cggacggctt tatgagttct tttgataaac aaaagattga tcaattagtt tcaccagaag
    12601 ctggcgtgac aagcataaat ggcaaaacag ggattgttga tttattcgca gcggacttag
    12661 atgcagcaga gataaaccac acgcatgcag aagcaactac tacagaaagt ggttttttgg
    12721 caaaagagga caaagaaaaa ctagacgcga tgcaaataat cgcgctggaa actattaagg
    12781 aggttataga atgactaaaa ttgtaaaaat gtcagagaaa aacgaacatg gaactctaga
    12841 acaattctat ccagaaacac atgcagaggc tgttaaagga cttgtgtcgg tttcagagga
    12901 agagaaggcg acatggaacg agaaagaaac tactgcgggt gcggaacaaa aggcgaatac
    12961 tgctttgaat agtgcgaagg attatgttga tacgattgga aaaggaacag taatatttaa
    13021 aggggccaat attatggctg ctggtcaaaa atatacatgg aattcttcca aactgaaatt
    13081 tggaatcact ttattattca gtcgttacga ttcagcaaat aatactcctt tagattatta
    13141 ttatcactct gttttcttat cgaaagctca attagcagaa ttagcaggta aaggtttgtt
    13201 agttcctatg ccctcagcaa cttatgggga aagaaaatat ttatatgttt ctgaaacaga
    13261 agttgctgga cacaatgata atactaataa tgcttcttgg gcattacgtc agctaactgt
    13321 aatgtaacta aaaaggaggt tttccatgga agtcatacta aaaattggga ttttaggttt
    13381 tggcgcgata tttggatact tgtttgggga agtggattta ttggtaaaag tgctggtgtg
    13441 ctttattgta gctgactata tttctgggct actcgcttca gggtatcttg gggaacttag
    13501 cagcaaaatg ggtttcaaag gaatcgcgaa aaaaatcgct atcttaattt tagtggctat
    13561 tgcgcatcaa atagatttga ttcttggaac gcataataca acgcgggatg cggttatctt
    13621 tttctatttg gcgaatgagc tgatttccat cttggaaaat tttgttcgaa tgggaatgaa
    13681 ggtcccggaa gtattgaaaa atttaatttt gattttcgat tctaagtcag gggacgagga
    13741 ggaaaagcat gacaaagata tggattgacg ctggacacgg tggtaaggat tcaggtgcga
    13801 gtggtaatgg acttgttgaa aaaaattggg tactaactgt agcaaaacaa cttcaaacgg
    13861 agttagttaa agctggtttt gaagtgggaa tgacaaggac aaatgataca ttctatgaat
    13921 taagtgatcg tgcgaagaag gcgaatagtt ttaaagctga tttatttatt tcgcttcatt
    13981 ttaatgctgg tggcggtaaa ggatatgaag attatattta cacatccgtc ccggctgcaa
    14041 cggtagaaat acagaaaatc attcataaaa atattattgc taaagttact aaacacggaa
    14101 tgaatgatcg tgggatgaag aaggctaatt ttgctgtatt aagagaaaca gcaatggacg
    14161 ctatcttact ggaagctggt ttttgtgata gcactgatgc attaattctt gagaagaaag
    14221 cttatcaaac tgattattgt ttaggaattg tagcagcagt acaagagatt tttggggcta
    14281 tggtaacaaa atatagggca ggtaaatatt tgacaagtga tgatgctata tcaggcacaa
    14341 atattaaagg atatttagaa gcaggaacaa aggtttttgt ttataaagaa acagaaaaaa
    14401 cgcttaattt aactactaca aagggtgttc caggaagttg ggttttaaaa acagaagtta
    14461 atacaggaaa aagataaaaa aggagcggcc aatttggctg ctcctttttc tcaattaact
    14521 tctcttccgc aaaacataaa gcgcagtagt cgttaaaaca ataccgaata cagttgcaaa
    14581 tccagctgta tcaccagttg ttggtaagga tgtgttagca gaagttcctg ttgttgatgt
    14641 gtttggtgtc gtagttgtcg gatcttcggt agtagtagtt ccgccgtttg tgccggagcc
    14701 gttaccgtta tttgttccgc catttccatc tgtgccaccg ttatttccgt ttccattacc
    14761 attgtccgtg ccgccgtttc cattatctgg aggagttgtt gccgcagctt gaaccgttgc
    14821 ttggaaagtg gtgctgtatc cgttcgggtc agtgatagtt gttgtgattt ggtcgccttt
    14881 tttaaggttt aaagatgtta catctacgga aaacttgcca tttgcgtcag ctgttgcgtt
    14941 aggtccggca gcaagggcca ttcttgcgtt agcagttgct ttttgaacag agacagttgc
    15001 gccaggcaaa gttgttccag ttagagtttt gtctttttcg gctagtttat tgatttttgt
    15061 tgcgtctttg attgctttga tagctgcatc ttcggtttct ttgtcgattt cagcttggga
    15121 tttgtagact ttacgtcctt ctttttgagc tgtaatgact tttccagcag ctttttggtc
    15181 tttgatgtag ttgatgaatg tttcagtgtc tgggtcgatt gcagttacta ggtttgcttt
    15241 tttgaaggca gaaaatccat cgccaccgcc aaataggaag tcattgatta cgactttgta
    15301 tttttggtcg gcttttaaag gagttccgtc ttctgttgta acgcttgcaa ctttgtacgc
    15361 atgatctaag tcatctgtat cagtgaaagt atattttaat ccagaaattt gtaggaaata
    15421 agtttggttg cttaaatatt gttggtttag agcttccaaa atatcagcac cagtcatttc
    15481 tactacttga agaatgttac caaatggttg aacagcttgt gccgcgcccc atgtgatttc
    15541 gttttggcca tttgcaagac gagtagtaag gtcagaacga attccgccgt tgttagtcat
    15601 agcaaagtcg acatcggcgc cggctttatt tgccatgtaa cgttgcgcat ctgtaatcat
    15661 gttaccaagc tctgattctt tatcatcaat tgctttgttg tctggattgg tgtcacgaga
    15721 aataacgtct ttattggcta gtccgatagt ttcgttgata accccttcaa tgcggctttt
    15781 cgcatcttca gtaacagctg taatatcggc atttggtgtg acgcttctcg tgttgtatgt
    15841 aattttagcg tcaggtggtg taacgaaatc gccggtagtt ttatcaagtt cgccagttac
    15901 atctgaaaaa gctttaccat tgttgtaact ttgaacgata cgagtttttc cgactaatcc
    15961 atttgtgtat tggtgattgt gtccagcaag aactaaatcg accgagttat ttgggtctaa
    16021 ttcatttgct tttgtgatca tattagcagc ttcgccagct acatcttgtt ttgttccagt
    16081 gttaggattt ccagtagaaa gtgcgggaac gtgagataga acaacgattg cgttaacgcc
    16141 ttggcctctt agttcagcag agtatttaac gattgtttct gcttcgtcaa ggaaatcgta
    16201 gtctttaata tgatttgcaa gaactaaatt aggaatttct gttgtaacga taccgatgaa
    16261 gccaactttg acgccatcaa tttcttttac atagtatggt aaaaagcctt ctgcgactgt
    16321 gtttgttcct ttgttgacca cgttagctgc gacgattttc atgtcacttt taacgcgtgg
    16381 ataagcttct acgattggtc cgaatttgtt tgtagaaact ccgtccaaaa ttcgtttgta
    16441 ttctggtaat ccttcatcaa actcatggtt acctaatgtg ccgacttcga aattcatttt
    16501 ttggagaact ttcatcgttg gctcgtcttg aagtaaacct gatactgctg gacttgcgcc
    16561 gaccatgtcg cccgcttgaa cacggatagc attgtcagtt gtcgccccag gatttgcctg
    16621 taaaaatgag ttagtggcat tatccaaatt ggtagctaag taatctgctc cgccaattgg
    16681 tgagcctgat gcatctttag aggctgtttc aagcgctccg tggaaatcat ttattcccaa
    16741 aatctgaatg ggaacggtat ccgctgctgc ttgtgctgtt gtcccggtga atggtgctgt
    16801 aagtccgatt gtgagccctg ctacgagtaa aacatgtgta gttttcttga aaaatttgtt
    16861 cactttcaca ctctcccttt tttcgccagt ggcaattttg taagcgctaa ctcataggtg
    16921 cctagctata attgtagcaa agaggaatca ccctagcaat aggaaatatg gattttgtgt
    16981 aaatgtagtg ataatatttg gctatatttt catttcgatg gaaaaaaggg taaactagag
    17041 aaaaaggagg gataagatgg atatctcaag tacggaaata tgggatgcaa ttaggagaaa
    17101 tagttatttg ctatattatc aaccaaaagt agacgcgaaa acgaataaaa ttattggctt
    17161 tgaaggtttg attcgattaa aaacggcaac aaccattttg gctccaattg atttctttga
    17221 tgatattgtc cttttaaatg caacgcggga aatgcaagat tttgttgctg aaacagcgat
    17281 aaaacagatt aatcagctag gaggacgttt ttcaatttcg attaatattc cggcacatta
    17341 tgtagcgagc agtacgtata tgactttttt acatgattat gtgaaagaac atttaaagta
    17401 tccggaatgc ttagaaatag agattatcga acgaggcgaa ataacggaac tagctatagc
    17461 ggataaaaac ttacgaaaaa taaaagacct tggtgtcaaa gtaagtatgg atgattttgg
    17521 gaaaggttat agttcgcttg cgtatttacg cagcttaccg attgatattg tgaaaacaga
    17581 tatgtccttt atcgcgcttt taaaaacaga tcgaaaacaa caaattatta ttcgagcgat
    17641 tgtcaatttg tgtcatgatt taggcgggaa agtagttaca gaaggcgtag aagacatgga
    17701 gcaagtcgaa aaattacggg aaatgaaagt agactatttc cagggctatt attttagtcg
    17761 accactaccg atggaagata ttaaagaaaa atattccttt gtgtaagatg tataaataaa
    17821 aaattggttg gtgtgagaat ggtaatttac caaattcaca ccaaccaatt ttattttatt
    17881 tgattaaatt atttgaagca tcttttacaa ccacgtcatg cgcgccgcct tctacgatag
    17941 aagtggacga aacaagggtg atttttgctt tttgttgtaa ttcagggata ttgagcgcgc
    18001 cgcagttaca catagtagag cgtactttgc taaggctgat ggcaacattg tctttcaaag
    18061 atccagcgta aggaacataa gaatctacgc cttcttcaaa agataatttc ttgtcgccgc
    18121 caaggtcata acgttgccag ttgcgcgcgc ggttagctcc ttcaccccaa tattctttca
    18181 tatacgtgcc gtttaaattc actttattag taggactttc gtcaaaacga gagaaataac
    18241 gaccaagcat gataaagtca gcgcccattg ctagagctag cgtcatgtgg tagtcataaa
    18301 caattccacc atcagaacaa atcggaatat atacacctgt ttcttcaaaa tattcatcgc
    18361 gtgctttagc cacatcaatt agtgcagttg cttgcccgcg tccgatacct ttttgttcac
    18421 gcgtgataca aatggaacca ccaccaacgc caactttaac gaaatctgcg ccagcttctg
    18481 caagataacg gaaaccatcg cggtcaacaa cattccctgc gccaactttg accgtatcgc
    18541 cgtatttacc gcgaacgtag tcaagtgtgc gtttttgcca ttcggagtaa ccctcagagg
    18601 aatcgataca cagaatatct gcgccagctt caactagagc ggggacacgt tcttcgtagt
    18661 cgcgcgtgtt aataccagct ccaacaacgt aacgtttgga ggaatcaagt agttctaatt
    18721 tattttcttt attagagtca tagtctttgc ggaataccat atggactagg tgctcgttat
    18781 cgtctacaag tggtagggca tttaatttgt tgtcccaaat aatgttgtta gcttctttta
    18841 aagtggtcga tttgttagca gtaactaatt tttcgaaagg agtcatgaaa tctgctactt
    18901 tttcatcagg gctcatgcgc gttacgcggt agtcgcgact tgtcacgatt ccaagtaatt
    18961 taccgtgcgc tgtgccgtct tctgtaactg ctactgtaga atgacccgtt ttttctttta
    19021 aattaaggat gtcttgaagt gttttgtcag ggctgatgtt ggaatcacta ataacgaaac
    19081 cagctttatg atttttcacg cgagaaacca ttgcagcttc actttcgatg gactgggagc
    19141 cgaagatgaa tgatacgcca ccttctgtcg caagcgcaat ccccatatta tcatcagaaa
    19201 cagcttgcat aattgcggaa acaagcggaa tgttcattgt gatagcagat tcttcccctt
    19261 ttttaaattt tacgattggt gtttttaagc taacatttgt tggaacacat tcagcggatg
    19321 agtagcctgg gacaagtaaa aattcactaa atgtgcggga cggttcttca aaataaaatg
    19381 ccattatttc cactccttct tctattttta aatgaattta taaaatatct ttattatttc
    19441 aataactgga tggaaagtca atgattgggg gagctttttc ggacgttttc ttttggggga
    19501 agagtggaat agatgaaagg tagagaaact ttggcgaagg aggtaatcag atggacgaag
    19561 aaacattgct agaacgtggc taccggaagt atcgcggggc ggaggtagat atttatttta
    19621 atacaaatat ttgcgagcat tcgggtaatt gtgtaaaagg taacgcagaa ctttttaatt
    19681 tggatagaaa accatggatt atgccggata atgtatcgaa agaagaagcg aaacgggtga
    19741 ttcatacttg cccgagtgga gcgcttcaat atatcgaaaa ataggaggat atcagatgga
    19801 atataaaaac ggtgaaaata gaatttatgc ggtaaatgat gaaggagtcg aggttggtga
    19861 agtgactttt gtgccaactg gggaagatat gtttattatt gaccatacag gcgttgatga
    19921 tgcggctcga ggtcagggaa tagcgcaaga acttgtgaaa cgtgcggtcg aaaaagcgaa
    19981 aacagaagga aagaaaattg ttccgctttg tccgtttgcg aaagcagaat ttgctaagaa
    20041 gccggaatat caagaagtac aagctgcaaa ataagaagtg tagactaggt tttatgccta
    20101 gtctattttt ataaaaaatt ttagaattcc ggttttctct tcttgacatc tgctttgttt
    20161 cagtgtatct ttaattcaca gtaaacttat aggaataata gtattacgtt ttcttatcaa
    20221 gagcggtgga gggaatcggc ccagtgaagc ccagcagcgg agcgcaagtt ctatgctaat
    20281 tccgatcaga agtaatattc tggcagataa gtagtagctt ttaatgaggc gcttcgattc
    20341 tgaccaaaaa acagaggaag cgttattttt tagcgcttaa agaggggagt ttttgttaga
    20401 tgaagaaatt tttattagta gcggttatct cggtttttgc cttggtgtta acggcttgcg
    20461 gaggctctgg cgctagttca gacaaagcaa atggttcagg caaagcgaaa gacggcggct
    20521 ctctaattat cggcgttact ggggatccag aagttatcaa tccgaactac gcttctgacc
    20581 gtgtaacatt aacgattcaa caagctgttt acgcaccgct attttgggaa gttgacggga
    20641 aaccggcact tgcaaaaagc ttagatattt cagatgacaa cttaacttac actgtgaaac
    20701 taaaagatgg tttaacttgg cacgacggca aacctttaac tgcagacgat gtagtattta
    20761 ctgtaaattc tattttagat acaaaacaaa acagcccgaa ccgcggcaac tttgtttttg
    20821 acgataaacc tgtaaaagta gaagcagtag acgacacaac ggtgaaattc actttaccaa
    20881 ctgttgctcc agcctttgaa aatacaatta aaactttctt cccaattcca aaacacattt
    20941 ttgaaggggt agaaaacatc gagaaaagtg ataaaaacaa aaatccaatc ggctcaggtc
    21001 cgtacaaatt tgttgaatac aaaacaggcg aatatgtttc cctagaacga ttcaacgact
    21061 attttgacgg caaaccaaaa ttggataaag ttactttccg aatcacaaaa gaccaaaacg
    21121 ctgctaattt agcactgcaa aatggcgaaa tcaacctaaa atccattcaa ccttctgata
    21181 gaaacaaagt agaaaaagcg agcgcggtaa acattatcac ttacccggaa aatcgcttaa
    21241 gctatgcaac attcaacgaa aaccaaccag cacttaaatc aaaagaactt cgccaagccc
    21301 tttcttatgc gcttgatcgt gaagaaatca ttgatgctgc atacggttca gatgaatacg
    21361 caaaaccagc ttcctcgttc ctaacagaaa acacaaaata tttcacggat aaagtagaaa
    21421 catacgacca agacattgcc aaagcgaaaa aattagtaaa agaaagtggt tttgatacaa
    21481 gtcaaaaact aactgtttac tatttaaaca acagtaaatc acaagaaagt atcgcgcttt
    21541 acttgcaaca acaatacaaa gaaatcggcg tgacacttga cttgaaacca acagatccaa
    21601 atgcactaag caacatcaca cttgaccgca aaaacgcaga ctactctatc gcactaaatg
    21661 gttatatcat ggggaacgat cctgatgcgt ataaatccct atacctaagc gatgcgccat
    21721 ataactattc gaactaccac aacaaagatc tagatgcact ttgggaaaaa ggtgctgtaa
    21781 ctgcagacga taaagaacgt caagaaatct atgaaaaaat ccaaaacacc attgctgatg
    21841 acgctgtaat ttatccaatt tcttatgata atgcagtgct agctcttgat agccgttacg
    21901 gtggtcaaaa agctgccaca ccacaaccag taaccatgtt ccgtgatctt tctaaactat
    21961 atttaacgga ataataatta aaaatcattc gtaaaaaatc tggcctgcca tgcttgtttt
    22021 tggcaggttc aggtttttac ttgtcatttt tagtgtttta gataggagat aaattatgct
    22081 aaaaacaatc ataaaacgcg tattgcaaat tattccgatg ctatttatta tctcgattat
    22141 ttcgtttgca cttataaaat tagcgcccgg ggatcccgtg aattcttttg ttacgcctga
    22201 tatgaatcct gacgatgtgg aacgaattag acaaagttta ggacttgatc aaccaattta
    22261 tgtgcagtac tttatttggc ttggaaactt gttgcaagga aatcttggtt attcgattgt
    22321 gaatagccag ccagttttgc aacaaatttt agagagaatt ccggcgacac ttggtttggt
    22381 gggaacttcg cttgttctga cgctattatt atcgattcca cttggtttag ttgcggcgaa
    22441 ttacgaaaat acgtggattg ataaagtatt aaacgggatt tcatatattg ggatttcgat
    22501 tccgattttt tggtttggga tgattttaat agatgtattt tcgattcagc taggttggct
    22561 tccaagtcta gggatgcgaa cgattggggt cgactctttt tgggatatgg cggagcatgc
    22621 gattttacca gttataacgc tgactttcca agggtgtgcg gcatattatc gttacgtacg
    22681 ctcgaatacc atcaaccaat taaaagaaga atatgttttg tttggttatg cgaaaggtct
    22741 atccaaagtg caaattatgg ggcatcatgt cttgaaaaat tccttgctac cagttataac
    22801 actacttggg atgtcacttc cgcaagtcat tacaggcgct tttattaccg aaagtatttt
    22861 ttcatggccg ggcatgggct cgcttggaat taacgcgatt ttccaattag attatccagt
    22921 tattatggcg attacgctat tttcagcgct gttattaatt atcggaaact tgctggccga
    22981 tttagcttat atgattgtcg atccgcggat tagggaaatg gggtgaggag ttcatgatgc
    23041 gattagattt ttcgaaaaaa acaatgcaag atttcgagcg ggatgcagaa gttgttcacg
    23101 caacacgaga gcgtagtttt tggcgtttta tgcttgctga ccgccgagct gtttttgcga
    23161 cgagtgtgct aatacttatt acggtggctt gtattttcgc gttcctttcg ccttatgacc
    23221 ctaatgctct ttccgttcag gacaaactga tgccgccaaa ttcgtcgcac tggtttggga
    23281 cggatgacca tggtcgggat tacttgacgc gtgtcttgta cggtggccgg gtttcactac
    23341 ttgtcggtgt atttgcgatg atgattgccg ttgtcgttgg aacgcttgct gggacagtta
    23401 gtggctactt tggtggattc attgacaata tggtgatgcg ttttcttgat attttcatgt
    23461 cgattccgtc atttttccta ctaatgattt taaatgcata cttaaaaccg ggaatttcga
    23521 acattattat cattatcgga ttgctttctt ggatggaagt ggcgcggata gttcgagcgg
    23581 agacgttaac attaaaagaa cgtgaattca ttttatactc caagtcatca ggtggcggat
    23641 ttttccacat catgttcaag cacattattc caaatgcgat gccatccatc gtcgttgcag
    23701 cttcattaaa cgtcgctaca gccattttaa ccgagtcagc actaagtttc cttggcttag
    23761 gcgttcaaca gcctaacgct tcgtggggca gcatgctgaa caatgcgcaa ggttacgtcg
    23821 gcgaagcaac atacttggcg cttttccctg gattactaat tttaatgacc atcctttcat
    23881 tcaacgtcct tggcgatgta ctgagaaaag ggttatcacg tagatattaa atgtaaaaac
    23941 actttgattt tttcagtcaa agtgtttttt tgttttttaa agaaaaggta cttaaaatag
    24001 aaacgtaaaa aacgtgtttt agccaatttc caaggcataa attcacaaaa cgctcacaaa
    24061 acgagaatgc gtgcggtgct ataattaagg ataaggtttc attattatag acagagatga
    24121 ggcgcagaaa tgagtgaaat aaaagttaaa gaagcaacat taaaaaaaca cgcgacaaag
    24181 ttagaatcaa aaggtaaatc aaccgaatat ttaccaatga aaggtggcaa tatggcttac
    24241 agtcaagcca attccatcaa ccattttcga acagcattgt ttgacttggt agacgcggtg
    24301 gacaattttc aaggtgtggt aggaacggat gccaaaagat tgaaagaatt aggcgtatca
    24361 tttactcgca aagaccaaga gcttgaacga ggcatgggat tgggaggtaa ataaatggat
    24421 gcaaagagcc agcaaatgga gacacaactg caactgctga aaaaagaaca atccgcggcc
    24481 gaagattttt tgcaagattt acaacgacaa caaaatgaac aagagtggtt agcagaagat
    24541 tttgcacgtg tccatcaaga agaacgggag tcgctggagc ttctacgcga agtttggcaa
    24601 ggcgcagaat caagaagttt cggctactat ttggcagatc tacaggaaga agaaaaacag
    24661 aagtggcata aaaaaatcca agcaaaccaa gaagaacacc aacaaaaaat caccgcttgc
    24721 caaaataaca tctaccaatt agaaaatcaa caacaagatt tacaaaagga gttgttacag
    24781 tgagccgaat tgacatcgga gaaatacaaa cctttgcgca ccaactacat acagctaatg
    24841 aagccggaag aaaaagcatt aaagacatca aaaaagccgt gaaaaactat accgaagacg
    24901 gcagtttaaa aggaaaagcg attgatgcat cgaaaattac tatcaaatga cctattttcc
    24961 attatgtgat gcgataatcg aagcaatgaa cgaaagcgaa gaacgattag cgcaatatat
    25021 agctgatttc cacgcccaag taagtggacg gttctgctga tgcgagaatt gatgcggacg
    25081 gcttatacga actcgggaaa atgattgatc gcatcgaagc gaaaaaagaa gcactagccc
    25141 agcgaatgaa tactggaaca gaagggcaaa tgcaaagtta ccgttcccag ctgagtatcg
    25201 cctacaaaca agaaaatatc ttagaaaaat acttggcttt tgaacaaagt catggcggtt
    25261 tttttgataa tttaaccgat ttagtccaag gaattcagca aaccattcgc gaactccagt
    25321 cgaatattca gtttaacagt aaaacgggca cctatgatat gagcaaattg aatttcacca
    25381 ccgtaacccg gatgcaaaat gccttaggaa aagcgctaaa aaataacgaa acaacattca
    25441 attttgacga atatcaaaaa acgtaccgtg gtcaaatgtg ggtgttaatg aaaaatggta
    25501 tagtagacgt agaagcaacg aacgcgtaca atgccgccgt gcttaacggg gaattagcac
    25561 ataaaagcaa tgaagcacag gaagaagccg agttgttgca ggcagttatt caatcggtga
    25621 aagaaggaat agacccggtt actgggcaag agataagtaa agcgcaaggg tttggtatta
    25681 taagtggtct tgttttccgc tatactgctg gaggttataa agggaagaag ttcaaggttt
    25741 ctaaagattg gttacacaga agaaagaaaa ataatggcgt tgaagttgga acggactttg
    25801 ggaaaatagg taaattagtt aatcatccta atattaaaat aaattggtct gaacactccg
    25861 aacatggaat gtctagattg aaacaacgtg gtctttctaa gagtcaagtt gacgattttg
    25921 tggagcgtgg aaaagcttta tcccagaatg ggggagaaaa atttgctttt ataactgaaa
    25981 atggtgttgc aattgtcagc aaagatggca aattagttac tgcttggggt aaaaaagatt
    26041 ttgatgaagg aatggaaaaa ataatagaaa aattgtatgg aaagtagggt gtcattatgt
    26101 atgaaaaagt agaaaaaata ataaatgatt gggatccaat agagctgttt cccttagctc
    26161 caaaagatga atatagtcaa gaaatcaaca aaataattag tattgttcaa gaaaatcata
    26221 acattgatat gaatgtatta gctaaaggta taagaaaaat tttcatagat tcgtttggag
    26281 aaaatttaat atttaaaaat aacgaagatg aaatagctga aaaaatttta gcgctataat
    26341 taatgaggga aataataaga tgga
//
LOCUS       DASEAA010000021        26261 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.021, whole genome shotgun sequence.
ACCESSION   DASEAA010000021 DASEAA010000000
VERSION     DASEAA010000021.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 26261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 26261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..26261
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.021"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(20..1477)
                     /locus_tag="U0342_000748"
     CDS             complement(20..1477)
                     /locus_tag="U0342_000748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM2422107.1"
                     /translation="MKKKWGVIIASLCLLLGLSACGSDEKADANEVPTLKWYMIGTPQ
                     KDTEEVMKEVNKYTEEKIGVKVEMTQIDWGDYGKRMQTVINSGENFDIAYSAAGEFVS
                     YSQKGAFLPLNKYLDKEGKNMKAELNDVLWEGATIDGNIYGVPSNKEVGEQQVYVFNK
                     NLVDKYKMDVTKVKNFSDLEPMLKTIKENEPSITPIGGNKDFKPAFPYDYLIDNAVPL
                     PFAVNQYEDTGKIVNFYEQPETLDILKSLHSFYQKGYVTKDIATSTDPWSYDKENWFV
                     RIEKYQPYAENIWDKNTGGKYKVVTQPIAETPIIKNNSVTGAIQAVSVTSQHPEEAVK
                     FLDLLNTDEYLRNLVDKGIEGTHYKELDDGKIQDLPARVERYSMPTYALGNHFILKLY
                     EDEPADKWDQFKEFNRKSVASPGLGFYFDSSKVRTEIASITNVCNEFAPALLTGTVDP
                     VEYTEKFKAKLNDAGMKKVMKEMQKQYDEFRASQE"
     gene            complement(1497..2468)
                     /locus_tag="U0342_000749"
     CDS             complement(1497..2468)
                     /locus_tag="U0342_000749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2422108.1"
                     /translation="MAEQLEAVSEIEQVRGEMEKPAKNKPAKDIIGFGKKMNVAMNIM
                     LAFLALICIFPFLYIIVISFSSESSLAANGFQLIPKEWSMEAYEYLWKMKGQLLQSYG
                     ITILVTVIGTVCSVAMIALYSYAISRPQFKYRRQFTFIAFFTMLFSGGMVPAYIVMTQ
                     FLHLRNSIWAMILPLAMNAFYIMIMRTFFLRSIPEPILEAARIEGAGELRIFLQMVVP
                     LSLPGLATIALFSTLGYWNDWFQASLYIDNPNLVPLQSLLMKIENNLEFMRQNSEIAY
                     TAGAFKSIPQDGAKMAMVVISTLPIAITYPFFQKYFISGLTIGGVKE"
     gene            complement(2487..3416)
                     /locus_tag="U0342_000750"
     CDS             complement(2487..3416)
                     /locus_tag="U0342_000750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2422109.1"
                     /translation="MKKVLSQIRANRIWLLMVLPGVLWFLVFSYLPMFGTVIAFKDYK
                     IDGKGFLSSIMSSDWVGLENFKFLFQTNDAFIITRNTVLYNLVFIIVGLFLGVALAII
                     FNSLLNKRGAKIYQTGMLFPHFLSWVVVSYFLFSFLSEDSGLMNNILLAFGQDPISWY
                     NDPKYWPFILIMMNVWKGLGYGSIVYLAAIAGIDRTYYEAAMIDGAGKWQQIRHVTIP
                     ALTPLMVILTILNVGKIFNSDFGLFYQLPRNSGPLYPVTDVIDTYVYRGLTSLGDMSM
                     SAAAGFYQSIVGFILVLLTNYIVKKINPEYGLF"
     gene            complement(3529..5013)
                     /locus_tag="U0342_000751"
     CDS             complement(3529..5013)
                     /locus_tag="U0342_000751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2422110.1"
                     /translation="MLKIVLVDDEPLILKGLESIIPEFEQSIEIVGTAKNGAIALELF
                     ANQDVDVLLTDIEMPVMNGLELIDEWKKRQPTTKTIVLSGFEDFHYVKRGLSAGIENY
                     LLKPLNEQELKETFIQIEKKQLTDSVIPREEAYYILRDNTIWRWLNLRINKEEWEERL
                     ALYDMILNSKENAVLIQIQPTKEINLTEWKNLSEQYRKDFPFMLLTPENEIIIGITEQ
                     TSISEQILAIHQDVKKRLSNEAFYLFISEKVQGEMMYPQAFRQLTRLLPERLVQEPGS
                     LIAYQKRTKHTWRPKRKQHQLAKLLVMNNEKEIKAWIQHFFKEWNDHKLESDPHQMLH
                     ILNELLVMMAESDPKELSESMGRIAEETSIEGLEEATLAYAIRYYNRKKQTDESKSPI
                     IQNVLSYITEHFAEGMSLKTLGNDFHINAVYLGQLFQKEMGEHFTDYLNRYRVNYAKE
                     ELLQTKDNLTIIAGKSGYTDMAYFYRQFKKHTGETPNRYRKIHQ"
     gene            complement(5013..6752)
                     /locus_tag="U0342_000752"
     CDS             complement(5013..6752)
                     /locus_tag="U0342_000752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2422111.1"
                     /translation="MSMTQELPRKRVFKRMLLIFSLTSLFTVSLLLFFIYKYYTNIQL
                     DTNLQRAETIANKQLDALTEKQKALISLTQDIYRNSDLMQDVQIAMTNDYGSYTEQNI
                     DNYFKSKNFYSVDMQTYLHSYFSYDEDIIALQLISDDGSYSYTFPSRYREWKETVDTY
                     GEANIATEASKQGTFYTIENKIVVKQPINDPSTLKQMGYLLLYIDPTFLSKWITKDYQ
                     NSIFQIQNTKGVELYSNHPKKQIQTPEKQGWLHADNKKVYFQKTEDETSGLKNNTFLY
                     RVTDDSAPLIELTLFGIGLLLVIFSISINFVISRRYSKRILTIIGGMNRVEMGTLDAK
                     LPVDNNGDELTMISERFNHMTENLDAYVKKVYSLEMEEQKARLKALQGQMQPHFLYNS
                     LEAIRMNARVEGAKATSDMIYQLATLLRYTANHREITTLGEEINYVKQYVRFMEMRHE
                     QPIKLEINIEKRFNHTQIPRFALQPLIENFFKYAFKENQNPIVVITVTAENDNLQFRI
                     EDNGSGIDAEKLKEVQATIESKDETSHIGLANLNKRLQLLYGENYRLTIKSKANEGTI
                     ILFQVPQNTGGEK"
     gene            complement(6809..7420)
                     /locus_tag="U0342_000753"
     CDS             complement(6809..7420)
                     /locus_tag="U0342_000753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YesL family protein"
                     /protein_id="HEM2422112.1"
                     /translation="MKLIDKFSVISDWIIRLVWTNLVWLFLVLIGGIVLGFMPATVAL
                     FTITRKWARGDLDVPVWKSAWQTYKQVFVSANLAGAVFALIGIFLYADLRIVFELMQG
                     FWSTILYFFLMFLLFLVGIAFLQYFTVFVHFQMKNVRAYVGQAFLLAITSFKNTFMIV
                     VGLVFCAWLISKMPAFILFISGVLPSYWIMKINLHRFKQMEPK"
     gene            complement(7481..8785)
                     /locus_tag="U0342_000754"
     CDS             complement(7481..8785)
                     /locus_tag="U0342_000754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEM2422113.1"
                     /translation="MTNKVPASFNKWIEKVKMTFPENEKLHRMFEKCFTNTYTTTLQE
                     TEEGLPFVITGDIPAMWLRDSTSQIRPYLIVAEEDEEMATVIENLVKLQTNCILHDPY
                     ANAFNKSANGAGFQNDKTAMTDLVWERKYEIDSLCYPIQLAYLLWKSTNRTGHFTEEF
                     RKALHQIIEVFKIEQKHTEQSPYRFERENVRQSDTLNNNGKGTDVSYTGMSWSGFRPS
                     DDACMYGYLVPSNMFLVVVMDYVQEIAAAFYPDDKELLKDSADLRKEVAAGIETYAKQ
                     AHPYYGDVYAYEVDGTGRKLFMDDANVPSLLAAPYLGFCEKTDPAYQATRKLILSREN
                     PYFVEGSVLTGIGSPHTPDHYVWPIALSIEGLTAETEAEKQAVLEMLIAGDGGTDYMH
                     EGVNASNPAEFTRDWFAWSNAMFSEFVLSMCGVYVKGSPLSK"
     gene            complement(8789..11446)
                     /locus_tag="U0342_000755"
     CDS             complement(8789..11446)
                     /locus_tag="U0342_000755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HEM2422114.1"
                     /translation="MTRKKAHIISHSHWDREWFLPLESLRFRLVTLMDEVEALLDKED
                     GFHHFHMDGQMIMLEDYLAVKPAKREKMKQLVADGKLRIGPWYMLQDAFLTSGEANIR
                     NLQYGLEMAEEFGQVEKIGYFPDTFGLYGQVPQLMRQAGFDTVVFGRGVNPTGFNNQV
                     FDSAFASKYSEMFWESPDGSKVLGILLANWYSNGNEIPVDKEAAKVFWDKKLADVERF
                     ASTDEWLFMNGCDHQPVQTDLAEALEVARELYPEVEFIHSHFEKYQEAVKAGLAPEKL
                     QTVHGELTSQQSDGWSTLANTASSRIYLKQANAKIERLLERLAEPISVMATEAGVQYP
                     HEYLAYAWKLLMENQIHDSITGCSLDEVHREMEARFEKVEQATMAIIQNAARQITEQI
                     TTNEAGIPITVFHAGGLEATRSIELELETDAIHFSEMHFELIPDELAKLPEQSFRLET
                     STGEEIPVVVESLGIRFNYDLPERKFRDSYFARKYKLTFAVENLPAVGYETIYAHPVD
                     LVNESANQTQDLFLENRFLKVEVAANGTYTILDKEKAIEIAGVGAYEDAGDIGNEYMF
                     KETGDNLRINTLHSKPAIRVLREDKLGKTIEINHEIEIPESASSAFAEEKRRLVWHPD
                     RQSERSENFTTFKITTELTLNKHDKQLTIRVKLNNNVDDHRLRVLFPTGKQTETHQVG
                     SVFEVVTRANKQVKEWTNPAKDNRKQGFVASGNIVVASVGLPEYEVSEHGDKLELTLL
                     RAVSEIGDWGDFPAYEAECHREITAEFHVFLTDDSDVANSTIPAQVNACLTPIFAFQH
                     KSATKENILAEKRDFAEWKTEAGFVFSAFKLAKDNQPIIRFFQTASEPKQLQTMQPWQ
                     KSTILEETTGDAKKQFTASPNEIITLKGV"
     gene            11689..14799
                     /locus_tag="U0342_000756"
                     /pseudo
     CDS             11689..14799
                     /locus_tag="U0342_000756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465539.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
     gene            complement(14868..15068)
                     /gene="cspB"
                     /locus_tag="U0342_000757"
     CDS             complement(14868..15068)
                     /gene="cspB"
                     /locus_tag="U0342_000757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein CspB"
                     /protein_id="HEM2422115.1"
                     /translation="MQTGTVKWFNSEKGFGFIEVEGGDDVFVHFSAIEGEGFKTLDEG
                     QSVEFEIVEGQRGPQAEKVTKL"
     gene            complement(15357..16052)
                     /locus_tag="U0342_000758"
     CDS             complement(15357..16052)
                     /locus_tag="U0342_000758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM2422116.1"
                     /translation="MNTNRKKATPLFVIGGFCLILFITIASAIATESNWVARFDLSWI
                     EKIRGGIQPDKTAIVKFLTTLGSAETTIILTIVVVLILFFLRKFVVGLWFGGTMLVCG
                     VVLNLVLKSLVGRTRPASVNWLVSESGFSFPSGHATATAVFYGLAAMFLIFIVPKMWQ
                     KIVIGIIGYGFILFVMYTRVYLGVHFPTDVLGGFFLGTASVFISLGVYFLVRKPLHNL
                     LVKWRIKDKSITE"
     gene            complement(16066..17055)
                     /locus_tag="U0342_000759"
     CDS             complement(16066..17055)
                     /locus_tag="U0342_000759"
                     /EC_number="5.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate epimerase"
                     /protein_id="HEM2422117.1"
                     /translation="METIHFTKVHGSQNDFFLVDEEENHITEWSDEKRANFAIKLCDR
                     KHSLGGADGILYVTKSSEVGPIGQMRVVNSDGSIASMCGNGLRTVARYLLEKHALTDA
                     KVETMKAILDVKKATSLGFDIPTYQVEISPVKFAAETLPMHVGVEKLFNQVIPELDAE
                     LAFSAVSVPNPHLITFVDQAVLDSDKQEKLASYLNSENPYFPDGVNVSFVKRLSDDAI
                     YVRTFERGVGFTNACGTAMSACSLIKKMLDNDILETPLNVYNDGGRVQVTAKKDAAGE
                     ISLQLIGNATFVSKGSVRYENDVVTELTNEATAEQAQYQALVKEVKEFLKTTE"
     gene            complement(17167..19932)
                     /gene="ileS"
                     /locus_tag="U0342_000760"
     CDS             complement(17167..19932)
                     /gene="ileS"
                     /locus_tag="U0342_000760"
                     /EC_number="6.1.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM2422118.1"
                     /translation="MEYKDTLLMPKTDFPMRGNLPNKEPEWQAKWEEEKLYEKIQEKN
                     AGRKAYILHDGPPYANGELHMGHALNKTIKDIIVRYKSMAGFSSPYVPGWDTHGLPIE
                     TAIAKKGVKRKEMSIAEFRKLCAEYAMTQVDGQRTGFKRLGINGDWENPYITLLPEYE
                     AEQIKVFGEMAKKGYIYKGKKPVYWSPSSESALAEAEIEYQDKKSASIFVAFKVTDGK
                     GVLDEGTNIVIWTTTPWTIPANMGITVNPDLDYVVIESAGEKYVVAEALLPSLREKLG
                     FEDATVVKTVRGSELDRVVTKHPFYDRDSLVMNGEHATAEAGTGAVHTAPGHGEDDFL
                     IGKKYDLEVLAPLDDHGVFTEEAPGFEGVFYDTANKMVTEKLEEVGALLKMEFITHSY
                     PHDWRTKKPVIFRATAQWFASIDAFRDDLLAAVKGVNWTPAWGETRLFNMVRDRGDWV
                     ISRQRAWGVPLPIFYAENGEAIITDETINHISELFREHGSNVWFERDVKDLLPAGFTH
                     PGSPNGEFTKETDIMDVWFDSGSSHQAVLNARPELSRPADLYMEGSDQYRGWFNSSLT
                     TAVAITGEAPYRNVLSHGFALDGEGRKMSKSLGNTLLPGKVIKQLGADIVRLWVASVD
                     YQADVRVSDEILKQVSEVYRKIRNTMRFLLGNINDFNPTTNAVSYENLREVDKYMLIK
                     LNDLVKNVKDNYEAFEFSTIYHQINNFCTVELSQFYMDFAKDVVYIEAADSHDRRAMQ
                     TVFYEAVVTLTKLLAPILPHTTEEVWNSLIGEGVESIHLQDLPEVKVLADSEEITAKW
                     DAFMQIRDNVQKALEFARNEKLIGKSMLAKVTLYVDGEAKTLFDSLEGDFAQLFIVSD
                     FELVEGLENAPESAFKSNQVAVQITVAEGETCERCRVVKKDVGVNPKHPTLCGRCADI
                     VVKHYEA"
     misc_binding    complement(19985..20218)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            complement(20215..20742)
                     /gene="divIVA"
                     /locus_tag="U0342_000761"
     CDS             complement(20215..20742)
                     /gene="divIVA"
                     /locus_tag="U0342_000761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum site-determining protein DivIVA"
                     /protein_id="HEM2422119.1"
                     /translation="MPLSPLDIHNKEFTRGFRGYDEDEVNDFLDQIIKDYEQVIKEKK
                     RIEDTLNNSEERLGHFTNIEETLNKSLIVAQTAAEEVKASAEKEAKLIIREAEKNADR
                     ILSDSLSKARKIAIEIEDLKRQSKVFRERLRMLVEAQMDLIKSEDWQQMMAYDVDATE
                     LASIKEVEAAESEER"
     gene            complement(20838..21359)
                     /locus_tag="U0342_000762"
     CDS             complement(20838..21359)
                     /locus_tag="U0342_000762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription repressor NadR"
                     /protein_id="HEM2422120.1"
                     /translation="MKKILGDTRRQMILKWLKEAEAPISGNQLAQKTNVSRQVIVQDI
                     SLLKAGNEPIMATPQGYIYAKETSYTGERRVIAVKHTKEQAAEELNILVDHGVSIIDV
                     IVDHPIYGEITASLHLKSRFDVEKFVRKLQTTGATMLSGLTDGTHLHTIEADTKEQLE
                     QAIKALDKAGFLI"
     gene            complement(21364..22470)
                     /locus_tag="U0342_000763"
     CDS             complement(21364..22470)
                     /locus_tag="U0342_000763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2422121.1"
                     /translation="MIYFDHAATTKMSEASLQVFMDASREFFANSESLHDAGTKSAAL
                     LEKCRESFSELLQVPNRGILFTSGGTESNQIAIQTLIHTTDKKEVLVSPLEHASVWQQ
                     LMALEQAGKCRIKVLPVDSFGQVNPATLEKMISAETGLIIIQHVNSEIGTIQPIAELA
                     HIAKKAGVFFHTDIVQSFGKIDLDLSDATSFSISSHKIYGPKGAGILFMKPDSPLQAV
                     LPDVHHEFGFRPGTVNVPAIAAFTTAAYDIIENREQEAIRAMKLKAAICDTLEARVEV
                     EGGPNTSPYILGLTLPNMQGQEALLALNEADIQISTTSACSLRDLAPSRTLIATGKTT
                     EEANRFIRLSFGRENELNDSIIFKEEIDKLLRKR"
     gene            22602..24056
                     /gene="nadB"
                     /locus_tag="U0342_000764"
     CDS             22602..24056
                     /gene="nadB"
                     /locus_tag="U0342_000764"
                     /EC_number="1.4.3.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-aspartate oxidase"
                     /protein_id="HEM2422122.1"
                     /translation="MTKERVIIIGSGIAGCTAAFRLMHDYDVTIITKGLKEESNSMLA
                     QGGVAAAVSKNDTPKKHFSDTFQAGCFHNKVLAVNQLVTNGPIVIQKLIAEGMTFDEQ
                     NGELSLGLEGAHQLPRILHTGGDQTGKFLTTFLQEKLTNIHWQEQKMAIEIIKQNDSA
                     IGVHCLDKENRLHTYYGEHIILASGGLGQLFPVTTNAATISGDGLALAYRAGAKLTDM
                     EFIQFHPTLLFLNGRCHGLISEAVRGEGAKLIRADGSAVMTDVHPRADLAPRDIVAAT
                     LFAEIQDGNEVFLDITPIPNFEERFPGITANLDAYHVPFRETKRIPVHPGAHFLMGGI
                     RTDLSGKTNIPGLYAIGEVANAGVHGANRLASNSLLETLVFGEKVAEYILTQKTNLID
                     HPEIPLSNQTRTPHLPDKQLLQEKIWETLGITRKPEKITEFLHWLTDFDYANHTRETA
                     EISHMLITAKIIAESALKRTESLGAHRILKGVIK"
     gene            24053..24898
                     /gene="nadC"
                     /locus_tag="U0342_000765"
     CDS             24053..24898
                     /gene="nadC"
                     /locus_tag="U0342_000765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylating nicotinate-nucleotide
                     diphosphorylase"
                     /protein_id="HEM2422123.1"
                     /translation="MNSILMNQAIQAFLLEDIGQHDLSAETVFPRDTMGEGVFLAKET
                     GILCGISIPPKVYELLGGNIQFEAYKKDGDWIQKGDIIAAVTAPVRTLLSGERVILNL
                     MQRMSGIASQTNFAVKQLDDSAIRICDTRKTAPGLRAFDKYAVQTGGGFNHRNGLYDG
                     VMLKDNHIAFSGGITSAVSTVREKLGHMVKIEVETETAEQVKEAVQAGADIIMFDNRT
                     PEEIKQLVKLVPPHITTEISGNVTLENIHRYKGSGANYLSLGSLTHSVRAFDISFNSK
                     GGIKA"
     gene            24895..25995
                     /gene="nadA"
                     /locus_tag="U0342_000766"
     CDS             24895..25995
                     /gene="nadA"
                     /locus_tag="U0342_000766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quinolinate synthase NadA"
                     /protein_id="HEM2422124.1"
                     /translation="MNLLETVEQDTMPTHYKQMTQAEMIARVTEIKAQLGENLFIPCH
                     HYQKDEVVPFADAIGDSLQLAQIAAQNKKAKHIVFCGVHFMAETADMLTTSEQIVTLP
                     DMRAGCSMADMADIHQLTNAWPKLQTLFGDTILPVTYINSTAAIKSFVGEHGGTTVTS
                     SNATKIVSWALEQKERIFFLPDQHLGRNTAFELGIPLEHMAIWNPIKNELEYEGNLDD
                     CKVILWKGYCSVHQHFTVKNIENIRKNNPKMRIIVHPECTHEVVSLADDSGSTKKIVT
                     EINNAAPGTEWAVGTEANLVGRIIQENPDKKIVSLNPFMCPCMTMNRIDLPHLLWTLE
                     AIQNGEQRNQIKVDKQTTKFALKALERMLQLS"
BASE COUNT         7678 a         5619 c         4727 g         8237 t
ORIGIN      
        1 actaagtcct ttctggtatt tattcttgtg aagcgcggaa ttcatcgtat tgtttttgca
       61 tttctttcat tacttttttc atacctgcat catttaactt cgctttgaat ttttccgtat
      121 attcaacagg atcaacggtt cctgtaagaa gtgccggcgc aaattcatta cacacattgg
      181 taatcgacgc tatttcagtt cgaactttag aggagtcaaa atagaaacct aagcccggtg
      241 atgcgactga ttttctattg aactctttaa attgatccca tttatctgct ggctcatctt
      301 catataattt tagaatgaag tgatttccaa gcgcatacgt tggcatgctg taacgttcca
      361 cacgtgctgg tagatcttga attttaccgt catctaactc tttataatgg gttccttcaa
      421 ttcctttatc aactaaatta cgtaaatatt catccgtgtt aagtaaatca aggaatttca
      481 ctgcttcttc cgggtgttgg ctcgtaacag aaacagcttg aatcgcacca gttacagagt
      541 tatttttgat gataggagtt tcagcaattg gctgtgtgac tactttatat ttgccgcctg
      601 tatttttatc ccaaatattt tctgcatatg gttggtattt ttcgattcgc acaaaccagt
      661 tttctttatc gtatgaccac ggatctgtgg aggttgcgat atcttttgtg acatatcctt
      721 tttggtagaa gctatgaagc gattttagga tatctaatgt ttcgggttgc tcatagaagt
      781 tgacgatttt gccagtgtct tcatattgat ttactgcaaa aggaagaggt actgcattat
      841 caatcaaata gtcatatggg aaagctggct taaagtcttt gttcccgccg attggtgtga
      901 tacttggttc gttttcttta attgttttta acattggttc taaatcgcta aagtttttta
      961 ctttcgttac gtccatttta tatttatcga caagattttt gttaaaaacg tatacttgtt
     1021 gctcgccgac ttctttgttc gaaggaacac cgtaaatgtt tccgtcaatg gttgcacctt
     1081 cccaaagtac atcatttaac tcggctttca tattcttgcc ttctttatct agatatttat
     1141 ttaatggcaa gaatgcgcct ttttgtgagt aagaaacgaa ttctcccgct gcagagtaag
     1201 caatatcaaa gttttctccg gagttaataa cggtttgcat ccgtttaccg tagtcgcccc
     1261 agtcaatttg tgtcatttct actttgacgc caattttttc ttctgtatat ttatttactt
     1321 ctttcattac ttcttccgtg tctttttgtg gcgttccaat catgtaccat ttcagtgtcg
     1381 gaacttcatt tgcatctgcc ttctcatcgc tcccgcacgc gcttaaacct agtagcaagc
     1441 agagtgatgc gatgattact ccccatttct tcttcattaa attccctcca tcttttttat
     1501 tcttttacgc cgccaattgt gagtccacta ataaagtatt tttggaaaaa cggataggtg
     1561 attgcgattg gtaatgtcga aataacaacc atcgccattt ttgcaccgtc ttgtggtatg
     1621 gacttaaacg cgccggcagt ataagcaatt tcagagtttt gtcgcatgaa ttctaagttg
     1681 ttttcaattt tcataagtag cgattgtagc ggcactaaat tcggattatc aatataaagt
     1741 gacgcttgga accagtcatt ccagtatcct agtgtagaga aaagcgcgat tgtcgcaagc
     1801 cctggtaaag aaagtggaac aaccatttgt aaaaagatcc gtagttcccc agcgccttca
     1861 attcgagccg cctcaagtat tggttctgga atagaccgta aaaagaacgt gcgcataatc
     1921 ataatgtaaa aagcattcat tgctagtggt aaaatcatcg cccaaatgct atttcgtaag
     1981 tgcaaaaatt gcgtcatcac gatataggca ggcaccatcc cgccactaaa tagcatggta
     2041 aaaaaggcaa taaatgtaaa ttgacgacga tacttaaatt gtggtcttga tatcgcgtaa
     2101 gagtaaagag caatcattgc aacactacat accgtaccaa ttactgtaac taaaatggta
     2161 ataccgtatg attgtaatag ttgtcctttc atcttccata agtactcata cgcttccatg
     2221 ctccactctt tgggtattag ttgaaagcca tttgctgcca gagatgattc actagaaaaa
     2281 gaaataacaa taatgtacaa aaatggaaaa atacaaatga gcgctaggaa agcgagcata
     2341 atattcatcg ctacgttcat ctttttccca aaaccaataa tgtctttagc tggtttattt
     2401 tttgctggtt tttccatttc gcctcggact tgttctattt cactcactgc ttcaagctgt
     2461 tctgccaaag cacctcgcct ccttttctaa aataagccat attctggatt tatttttttc
     2521 acgatgtagt ttgtgagtag cactagaata aagccaacga tggactgata gaagccagct
     2581 gccgcactca tactcatatc tccaagtgac gttaaacctc ggtatacata tgtatcaata
     2641 acatccgtca caggataaag tggtcctgaa tttcgcggta gttgataaaa caaaccaaaa
     2701 tcagagttaa aaatcttccc gacattcaaa atcgttaaaa taaccatcag tggcgttagt
     2761 gcaggaattg ttacatgcct aatttgttgc catttgccag cgccatcaat cattgccgcc
     2821 tcgtagtagg tccggtcaat tccggcaatt gctgccaggt agacaatact tccataaccc
     2881 aagcctttcc aaacattcat catgataagg ataaacggcc agtatttcgg atcgttatac
     2941 caggaaatcg ggtcctgtcc gaatgcaagt aaaatattat tcatcagccc actgtcttcg
     3001 ctcaaaaaac tgaacaagaa atagctgaca actacccatg ataaaaaatg ggggaaaagc
     3061 attcccgttt gataaatttt tgctcctcgc ttatttagta agctgttgaa aataatagca
     3121 agtgctacac caagaaacag cccaacaata ataaatacta aattataaag aacggtgttt
     3181 cgggtaataa taaaagcgtc gtttgtttgg aataggaatt taaaattttc aagtcccacc
     3241 cagtcgctac tcataatact ggataaaaat cctttcccat caattttgta atctttgaat
     3301 gcaatcactg taccaaacat tggtaagtat gagaaaacca ggaaccaaag gacgcctgga
     3361 agtaccatta aaagccaaat ccgattagct cgaatttgtg ataaaacttt tttcaatcca
     3421 ttcacccctc ttttttgtaa gtgctttcaa catctttagt ttatcgtttt tacgtggggt
     3481 taaatagttg cggatgttta gatttataga caaatattag aaataatttt attgatggat
     3541 ttttcggtag cgatttggtg tttcgcctgt gtgctttttg aactggcgat aaaaataagc
     3601 catatcggta taaccagatt tcccagcgat aatggttaag ttatcttttg tttgcagtaa
     3661 ttcttctttt gcatagttca cccggtagcg atttagataa tccgtaaagt gttcgcccat
     3721 ttctttttga aaaagttgac cgagataaac agcattaata tgaaagtcgt taccgagtgt
     3781 ttttaaagac attccttctg caaaatgttc cgtgatatag gaaagcacat tttgaataat
     3841 ggggcttttt gattcatctg tttgtttttt gcggttatag taacgaatag cgtaggctag
     3901 cgtcgcctct tccaatccct caatactcgt ttcttcggca attctcccca tggattcgct
     3961 taactctttc ggatccgatt ccgccatcat cacaagcagc tcattcaaaa tatggagcat
     4021 ttgatgcggg tcgctttcca gcttgtggtc attccattct ttaaaaaagt gctggatcca
     4081 cgctttaatt tctttttcgt tattcatcac tagaagcttc gcgagttgat gttgctttct
     4141 tttcggacgc caagtatgtt tggtacgttt ttgataggca attaggctac caggctcttg
     4201 cacaagtcgt tctggaagca acctagtaag ttggcgaaag gcttgcgggt acatcatttc
     4261 accttgtact ttttcactga taaacaggta aaaagcttca ttcgaaaggc gttttttcac
     4321 atcttgatga atcgctaaaa tttgttcgga tatcgaagtt tgttcggtta ttcctataat
     4381 tatttcattt tctggcgtaa gtagcataaa tggaaagtcc ttccgatatt gttcagaaag
     4441 atttttccat tcagtcagat tgatttcttt tgttggttga atttggatga gaacggcatt
     4501 ttcctttgaa tttaatatca tatcgtataa tgctagtcgc tcttcccatt cttctttgtt
     4561 aattcgtaaa tttagccaac gccaaatcgt attgtcccgt aaaatgtaat acgcttcttc
     4621 ccttggtatc acactgtctg tcaattgttt tttctctatt tgtataaacg tttcttttaa
     4681 ttcttgttca tttaaaggtt ttagtaaata attttcgatt cccgctgaaa gcccgcgttt
     4741 cacataatga aaatcttcaa atccggagag aacaatagtt ttagtcgttg gttgccgctt
     4801 tttccattcg tcgattaatt ctaaaccatt cattacaggc atctctatat cggtcaaaag
     4861 gacatctacg tcttgattag caaataactc taaggctatt gcgccatttt tagccgttcc
     4921 aacaatttca attgattgct caaattctgg aataatactt tctaaacctt tgagaataag
     4981 gggctcgtcg tctactagta caatttttag cattactttt ctcctcccgt attttgaggt
     5041 acttgaaaca gaatgatggt accttcattt gctttactct tgattgttaa tcgataattt
     5101 tctccatata aaagctgcaa tcgtttgttt aaattagcta gaccgatgtg gctcgtctca
     5161 tctttacttt caattgttgc ttgcacttct tttaatttct ctgcatcgat tcccgaacca
     5221 ttgtcttcaa ttctaaattg taaattgtca ttttctgcag tgaccgtaat tacgactatt
     5281 ggattttgat tttctttaaa agcatatttg aaaaagtttt caataagcgg ctgcagagca
     5341 aaccgtggaa tctgcgtatg attgaaacgt ttttcaatat tgatttccag cttaattggc
     5401 tgttcgtggc gcatttccat aaagcggaca tattgtttca cgtaattgat ttcttcacct
     5461 aaagtggtga tttcacggtg attagctgtg tagcgcagta gtgttgcaag ttgataaatc
     5521 atatcacttg tcgctttggc tccttctacg cgtgcgttca tcctaattgc ttctagtgaa
     5581 ttataaagaa aatgaggttg catttgacct tggagtgcct tgagccgcgc tttttgttct
     5641 tccatttcta ggctatagac cttcttcaca taagcatcga ggttttctgt catatggtta
     5701 aaccgctcac taatcatcgt cagctcatcc ccgttattat cgaccggaag ctttgcatca
     5761 agggtcccca tttccacccg gttcatcccg ccaataatcg ttaaaatccg cttagaataa
     5821 cgcctactaa taacaaaatt aatgctaata gaaaaaataa ctaataacag cccaatacca
     5881 aataaagtaa gttcgatgag cggcgcgctg tcatctgtta ctcgatataa aaacgtattg
     5941 tttttcaagc cacttgtttc atcttccgtt ttttgaaagt atactttttt gttgtcagca
     6001 tgaagccatc cttgtttttc aggcgtttgg atttgtttct ttgggtggtt ggaatataac
     6061 tcgactccct tcgtgttttg tatttgaaaa atcgagtttt gataatcttt cgtaatccat
     6121 ttgcttagaa aagtcggatc aatgtaaaga agcagataac ccatttgttt taatgtgctt
     6181 ggatcattaa tcggctgttt cacaactatt ttattttcga ttgtataaaa agtcccttgc
     6241 tttgatgctt cggtggcgat atttgcctcc ccgtatgtat caaccgtttc tttccattca
     6301 cggtaacggc tcggaaatgt ataagagtaa ctcccatcat ccgaaatgag ctgcagcgcg
     6361 ataatatctt catcatacga aaaataagaa tgtaaatacg tttgcatatc tacagaatag
     6421 aaatttttac ttttaaaata gttatcgata ttttgctctg tgtagctacc gtaatcattt
     6481 gtcatcgcga tttgaacatc ctgcatcaaa tcgctattac ggtaaatatc ttgcgttaaa
     6541 ctaattaatg ccttttgctt ctccgtaagt gcatcgagct gtttattcgc aatggtttcc
     6601 gctctttgga gattggtatc tagctgaata ttagtatagt acttataaat gaaaaaaagt
     6661 aacaagctca ccgtaaaaag acttgttaaa gaaaaaatta acaacatcct tttgaaaacg
     6721 cgcttgcgtg gtaattcttg tgtcatgctc attcactgcc ccctcttctt ttctgattat
     6781 tgcatactat caccaataat gtaaggggtt acttaggctc catttgcttg aagcggtgta
     6841 aattgatttt cattatccaa taacttggta aaacaccaga aataaacaaa ataaaagcag
     6901 gcattttcga aattaaccat gcgcaaaaaa caagaccaac cacaatcata aaagtatttt
     6961 taaagctagt aatcgcgagc aagaacgctt gcccgacata agcgcgcaca tttttcattt
     7021 ggaagtggac aaacactgtg aaatactgca aaaacgcaat tcccacgaga aaaagcaaga
     7081 acattaagaa gaagtataaa atcgtcgacc aaaaaccttg cattaattca aaaacaatcc
     7141 gcaaatccgc ataaaggaaa atccctatca gcgcaaaaac tgcacccgct aaattagccg
     7201 aaacaaacac ctgtttataa gtttgccaag cagatttcca aactggtaca tctaaatcgc
     7261 cccgcgccca ttttctcgtt atcgtaaata aagcaaccgt tgccggcata aagccaagca
     7321 caatcccgcc gatcaatacg aggaaaagcc atactaaatt tgtccagacg agccggataa
     7381 tccagtcgct aataactgaa aatttatcaa taagtttcat tctttttctc tcctttgata
     7441 gtaagagaaa gcctgagttt tcgcccagac ttttcttttt ttatttactt aatgggctgc
     7501 cttttacgta cacaccgcac atgcttaaaa caaattcact aaacatcgca ttcgaccaag
     7561 caaaccagtc gcgcgtgaat tcagccggat tcgaggcgtt gacaccttcg tgcatataat
     7621 ccgttccgcc atctccggca atcagcatct ctaaaacggc ttgtttttcc gcttctgttt
     7681 ctgccgttaa tccttcgatg ctgagtgcaa tcggccagac ataatgatca ggtgtatgtg
     7741 gactaccaat tcctgtaagt acactacctt cgacaaaata aggattttct cggcttaaaa
     7801 ttagttttct agtcgcttgg tatgcaggat cagttttttc gcaaaaacca aggtatggtg
     7861 cagcgagcaa gcttggcaca ttagcatcat ccataaataa tttacgccct gttccatcaa
     7921 cttcatacgc gtaaacatca ccgtaatacg gatgcgcttg tttcgcatag gtttcaatcc
     7981 ctgcagcaac ttcttttcgt aaatctgcgc tatctttcag caattcttta tcatccgggt
     8041 aaaacgccgc tgcgatttct tggacgtaat ccatcactac aactaaaaac atattactcg
     8101 gtacaaggta gccatacata catgcgtcat cacttggtct aaagccactc caagacatac
     8161 cagtatagct tacatccgtt ccttttccgt tattatttaa ggtatctgat tgacgcacat
     8221 tttctcgttc aaaacgatac ggactttgct ctgtatgttt ttgttcgatt ttaaaaactt
     8281 cgatgatttg atgcaatgct tttctaaatt cttcggtaaa atgacctgta cggttggtac
     8341 ttttccataa taggtacgct aattgaatcg gatagcaaag tgaatcaatt tcatattttc
     8401 gttcccaaac caggtcggtc attgctgttt tgtcgttttg aaatcccgca ccattcgctg
     8461 atttattaaa agcattcgcg tatgggtcat gcaaaataca gttagtttgt aactttacga
     8521 ggttttcaat aacagtcgcc atttcttcgt cttcttccgc cacaattaaa tatggtctaa
     8581 tttggcttgt agaatcgcgt aaccacatcg ctggaatgtc tcctgtaata acaaatggaa
     8641 gcccctcttc tgtttcttgt aaggtagttg tatacgtatt cgtaaaacat ttttcaaaca
     8701 tgcggtgaag tttttcgttt tctggaaaag tcattttcac tttctctatc catttgttaa
     8761 aacttgctgg tactttgttt gtcatctatt acactccttt taaagtgatg atttcgtttg
     8821 gactagcggt aaattgtttc ttggcatctc ccgtcgtttc ttccaaaata gtcgatttct
     8881 gccacggttg catcgtctgt agctgttttg gttcacttgc ggtttggaag aatcggataa
     8941 tcggttggtt gtctttagcg agtttaaatg ctgagaagac aaatccagcc tctgttttcc
     9001 attctgcaaa atctcttttt tctgcgagaa tgttttcttt cgttgctgat ttgtgttgga
     9061 atgcaaaaat aggagtcaag catgcgttta cttgtgctgg gatggtgcta tttgcaacat
     9121 cagaatcatc tgttaggaaa acgtgaaact ctgctgtaat ctctcggtgg cattccgctt
     9181 catatgccgg gaagtcaccc caatcgccta tttcagatac tgcgcgaagc aacgttaatt
     9241 ctagtttgtc accatgttcg cttacttcat attctggtaa accaacactt gcgacaacga
     9301 tatttccact agcaacaaag ccttgttttc ggttatcttt agcaggattt gtccattctt
     9361 tgacttgttt attcgcgcgt gttactactt caaaaacact tcccacttga tgtgtttctg
     9421 tttgttttcc agtcgggaaa agcacgcgga gtcgatggtc atctacgttg ttatttagtt
     9481 tcacgcggat agttaattgt ttatcgtgtt tatttagcgt taattctgtc gtgattttaa
     9541 atgtagtaaa attttccgag cgctccgact gccggtcagg atgccatact aggcgacgtt
     9601 tttcttccgc aaaggcggaa cttgcgcttt ctggtatttc aatttcatgg tttatttcga
     9661 ttgttttgcc gagtttatcc tctcgtagta ctcgaattgc cggtttggaa tggagtgtat
     9721 ttattcgcaa gttatcgccg gtttctttaa acatatattc attaccgatg tcgcccgcat
     9781 cctcatatgc cccaacacct gcaatttcta tcgctttttc tttatctaaa atcgtatacg
     9841 tcccattcgc cgcaacttcc acttttaaaa agcgattttc taaaaacaaa tcttgtgttt
     9901 ggttcgctga ttcattcacc aaatcaaccg gatgcgcgta aattgtttca taaccaaccg
     9961 ctggcaaatt ttccacggca aaggttagtt tgtactttct cgcaaaataa gaatcacgga
    10021 atttccgttc tggtaaatcg taattaaatc gaatgccaag cgactcaaca acaaccggaa
    10081 tttcctcgcc agtacttgtt tctaatcgaa aactttgctc tggaagtttc gctaattcgt
    10141 ctggtattaa ttcaaaatgc atctcagaaa aatgaattgc atctgtttca agttcgagtt
    10201 ctatggatct cgttgcttca aggccacctg catgaaatac cgtaatagga atgcccgctt
    10261 cattcgttgt aatttgttcc gtgatttgac gcgcggcgtt ttgaataatt gccatagtcg
    10321 cctgttcgac tttttcaaaa cgagcttcca tttcacggtg cacctcatcc aaactacatc
    10381 ccgtgatact atcatggatt tgattttcca taagtaattt ccaagcataa gctaagtatt
    10441 catgtggata ctggacaccg gcttctgtcg ccatcacgga aatcggttca gccaaacgct
    10501 ctaataaacg ctctattttc gcatttgctt gttttaagta aatacgtgaa gatgctgtgt
    10561 tggcgagtgt agaccatcca tctgattgtt ggctcgttaa ttctccgtga accgtttgta
    10621 atttttcagg agcaagacca gctttgacag cctcttgata tttttcaaaa tggctatgga
    10681 taaactccac ctcaggataa agttcccgtg ccacttccaa tgcttccgct aaatcagttt
    10741 gcactggctg atgatcacag ccgttcataa ataaccattc atccgtcgat gcgaaccgtt
    10801 ccacatccgc taatttctta tcccagaaaa cttttgcggc ttctttatcc accggaattt
    10861 cattgccatt ggaataccaa tttgcgagta aaatccctaa tactttcgac ccgtccgggc
    10921 tttcccaaaa catctccgaa tatttcgagg caaaagcgct atcaaaaact tggttgttaa
    10981 agccggttgg attgactcca cgaccgaaaa cgaccgtatc aaaaccagct tggcgcatga
    11041 gttgtggcac ttggccatat aaaccaaacg tatcaggaaa ataaccaatt ttctctactt
    11101 gaccgaattc ttctgccatt tctagaccat actgcaaatt acgaatattc gcttctccac
    11161 ttgtcaaaaa agcatcttgc aacatgtacc acggtccgat tcgcagtttt ccgtccgcaa
    11221 ccagctgctt cattttttct cttttagcgg gtttcacagc caaataatct tctaacataa
    11281 tcatttgccc atccatatga aaatgatgaa atccatcttc cttatcaagt aatgcttcta
    11341 cttcgtccat aagtgtaacg agcctaaatc tcaaactttc cagtggtaaa aaccattctc
    11401 tatcccaatg agaatgagaa ataatatgcg ctttctttct agtcattttg cccctccaaa
    11461 tatccttttt gtattcgctt tcaagctaag tatagtaagg gctaaagtga attgcaatgc
    11521 taggtgaaaa actactatga ataatccatt ttcccttgat ttgtccatta caagaaagcg
    11581 taatccttcc cactctaaga gaatctccca gcatacccaa aaaaagccaa attgacatct
    11641 tttgccgcta tgatatattg aaaccgttct agacaaaata gaaaggatat gagtatacat
    11701 atgtttttca ctaaagataa actacgaggc cgtctggatg aagtcgcgct ttatcgttac
    11761 gaaaaaactt atcctatccg taatttccaa gcagccgagg atatggatgg agaaatcgct
    11821 gcacgaccaa ataacgtctt gtatgataac gaattgacta tcggggaaaa ctggtcaggt
    11881 agggaccgtt atgtctggct caaaacaacc attacttttc cagacaccaa aactgacacg
    11941 cgcttgattg gctactttga ctttgggaat accggcgacg gccacaattc cggctttgaa
    12001 tcactattat ttgttaatgg ggaaccatat caaggcgtcg atcaaaatca ccgcgaagtt
    12061 cttttcccag atagttttgc tggaaaaaag gtggaactgg tcttccgttt atggtccgga
    12121 ctggaaggcg gcggcactcc tactatccag acacaccagt taaaagaagc ctttattgga
    12181 tacttaaatc tcgtcattga tgatttgtat ttcacgagta aagcaacttt aaaaacactc
    12241 gaccaactcg aagaaaaaaa tccaacccat gcgccgctcc tccaagcgat taatcgcgct
    12301 taccttgcaa ttgattggag tacaccagga tccgaacaaa accttgcctc gatggcaaca
    12361 gccaaccaaa tcttacaagc cgcactggaa aaaatgccga aaaattttcc tatcaaagtg
    12421 gcggctgttg ggcatacaca tatagatgta gcatggctat ggcgcttaaa gcatactcgc
    12481 gaaaaagccg cacgatcatt ttcgactgtg cttcatttaa tggaagacta tcctgaatac
    12541 ttatttctcc aatcgcaacc gcaactttac gcctatatca aagaagatta cccagaaatt
    12601 tatgcgaaaa tcaaaacgaa aattagcgaa ggaaactggg aagctgacgg tggaatgtgg
    12661 cttgaagcag attgtaatat tcctagcggt gaatccctcg tacggcaaat gctctacggt
    12721 cagaaatttt tacgcgaaga atttggtaaa ccttctagtt ttctatggtt gccggatgta
    12781 tttggctata gctgggcttt accacaaatc cttcgtaaat caggcataaa gacttttatg
    12841 acaaccaaaa taagctggaa tcaatataat cgtatgcctc atgatacgtt ccagtggcgc
    12901 ggaattgatg gtacagaaat tttgacccat ttcatcactg caccagaaaa aaatagccgc
    12961 atttcaacct ataatggcaa aatgacagca cgagaacttg ttggtctttg ggacaaatat
    13021 caagataaag aggtaaacca agaattacta cttgcttacg gctacggaga tggtggtggc
    13081 ggtgtgaacc gagaaatgct agagatgcgc cgtcgttatg atacgatgcc aggaattcct
    13141 gaagtaaaac caaaaagtgc tacttcttat ttcaacgatt tacacgaaac gataaatacg
    13201 acagaccaat atgttcatac ttggaacggc gaactttact tcgaatatca ccgcggaact
    13261 tatacgagcc aagcctttac gaaaaaaatg aatcgaaaaa tcgaactcgg cttacgaaat
    13321 agcgaatggc tttccgtttt agcaaatcta aaacaaggaa cgtcttaccc aactgaaaaa
    13381 ttagcaggca tttggcaaat tttacttcga aatcagtttc atgatattat tcccggctct
    13441 tccatcaaag aagtttatga cgacgctcta attgagtaca cggaagctat gacggaaaat
    13501 aatacgttaa tttctaatca attgaccaat ttaactacag atgccgatga aaaaataaca
    13561 ctttggaata gttccacttg gtccagaccg cgatacatcg aaatttcacc cgacaatcaa
    13621 tcgaaccatt tagcctttta tgatgaaaat aatgctccac tgcctgcgca aaaattggta
    13681 aataatgcct ggcttatcca gcatccaaac atacctgcgc ttggtgctac aactatttct
    13741 gttaaagaaa cagcaaacat tttagaacaa ccatcttttc actacaaaaa taaccaattg
    13801 gaaacaccct tctatcaaat caaatggaat aaagccggac aattcacgtc catttttgac
    13861 aaaaaaaata accgccaagt aatagcggaa aatgcgcgag gtaatgtatt tcaattattt
    13921 gaagataagc cgatgtggca tgacgcctgg gatatcgacc tattctatca ataaaaacaa
    13981 aaagaaatca gcgcgctaga ttcagttgaa ataaccgaga acgggccact ccaattcact
    14041 atgaagcaag tgctacattc cgaaaaatct caaatcactc agtggattca tttttatcac
    14101 gagagccctg aaatcagatt tgaaaccgag gtcgactggc gagatcgtaa ccagttgctt
    14161 aaagtcgcct tccctgtcgc tgtgcatgcc agtgaagcta gctatgacat ccaattcggg
    14221 aacgtcaaac gcccaacgca ctggaataca agttgggatt atgctcgctt tgaaaccgtt
    14281 ggacatcaat gggctgatct ttcggagaaa aattacggcg tcagtttgtt aaatgattcc
    14341 aaatacggct atgatattaa agattcaact atccgcctta cacttctgaa agcagccggt
    14401 tatccagatc cagatgccga tttaggaatc caccaattca cttattcgct ctatccacat
    14461 caaggtgatt ttttagacgg ggaaacagtt caagcagcat gggaattgaa taatccaatt
    14521 ttcacttcca agggggaaat tgaaactttt tctcttttcc aagtgaccaa tccttacgtg
    14581 atgattgata gcattaaaca agccgaggac ggtgatggta tcattttacg attgcatgaa
    14641 tttgcgggaa ctcacggcga agtaacaatc acaagtggtt acccgattac ctcaatcaca
    14701 gaatgcaact tacttgagga aaacgaaaca tcgctttcca atccgacctt tgcagtagct
    14761 ccatttgaaa taaaaacata ccgaattcat ttagcataaa aaaacacgca gcaaggcttc
    14821 tccctaagaa gtccgctgcg tgtttttatt agtttaacgt gaacagatta aagtttagta
    14881 actttttctg cttgtgggcc acgttggcct tcaacgattt caaattcaac gctttgacct
    14941 tcgtctaaag ttttgaatcc ttcaccttcg atagcgctga agtgtacgaa tacatcatct
    15001 ccgccttcta cttcgatgaa accgaagcct ttttcactgt taaaccattt aactgtacct
    15061 gtttgcatat ttcacaaacc tccaaaaatt ttcttaatat gtttctttta ctaacgaaaa
    15121 agatgttaac aacaagctaa tcattttttc aattacaaaa ttcacatatt agcaaagata
    15181 ctcactccac atcaatatcc ttgataataa gcaaattagc tactatcaac acttatatat
    15241 taacgccaac gagcaaataa atcaagtgaa aaagccgtac ggttacaaaa tagagtattc
    15301 agtttactat ctgaaaaacc ctgctataag ctaattctta taacagggtt tttatattat
    15361 tctgtaatac ttttatcttt aatccgccat ttcacaagta aattatgtaa tggttttcgt
    15421 actaagaaat aaacgcctag tgagataaat accgatgctg taccaaggaa aaatccacca
    15481 agtacatccg tcgggaaatg cacaccaaga taaacgcgtg tatacatgac aaacaggata
    15541 aaaccataac cgataatacc gataacgatt ttttgccaca tttttggcac tatgaaaatc
    15601 aagaacatcg ctgcaagacc ataaaaaaca gccgttgccg tcgcatgtcc acttgggaaa
    15661 ctaaagcctg actcgcttac taaccagttc acgctagctg gacgcgtacg accaaccaaa
    15721 cttttcaaga caagatttaa gactactcca caaacaagca tcgttccacc aaaccaaagt
    15781 ccgacaacaa attttcgtaa aaagaataaa ataagaacga ctacgatagt caaaataatt
    15841 gtcgtttctg cgcttcctaa agtagttaga aatttaacaa tggctgtttt atccggttga
    15901 atgccgccgc ggattttttc aatccagctt aagtcaaaac gtgctaccca gttactttct
    15961 gttgcgatag cggaagcgat agtaataaat aaaataaggc aaaatccgcc aataacgaat
    16021 aacggtgttg cttttttacg atttgtattc atggttaact ccttttcatt cggttgtttt
    16081 tagaaattct tttacttctt ttacaagcgc ctgatactga gcttgttcag ctgtcgcttc
    16141 atttgtaagc tctgtaacga catcattttc ataacgaacg gaacctttgc taacaaaagt
    16201 ggcattgcca atcagttgta gcgaaatttc accagcagca tcttttttcg cagttacttg
    16261 cactcttccg ccatcattat aaacatttag cggcgtttcc aatatatcat tatctaacat
    16321 ttttttaatc aaactacaag ccgacatcgc tgttccacat gcattcgtaa aaccgacgcc
    16381 gcgttcaaaa gtacgcacat aaatagcatc atcgcttaaa cgtttcacaa agcttacatt
    16441 cacgccatct gggaaatacg gattttcgct atttaaataa cttgctaatt tttcttgttt
    16501 atcggaatct agcacagctt ggtccacaaa tgtaatcaaa tgcggattag gaacagaaac
    16561 agcagaaaaa gcgagttctg catcaagttc tgggataact tgattaaata atttttccac
    16621 gcctacatgc atcggtaatg tttctgctgc aaatttaaca ggagaaattt ccacttgata
    16681 ggttggaata tcaaaaccaa gcgaagttgc ttttttgaca tcaagtatcg ctttcatagt
    16741 ttctactttt gcatctgtca aagcatgttt ctcaagtaaa tagcgagcta ccgttcttaa
    16801 gccattcccg cacatcgaag caattgagcc atctgaatta acgacacgca tttggccaat
    16861 tggtccaact tcactgcttt ttgtgacata taaaattccg tctgccccgc caagcgagtg
    16921 ctttctatcg caaagcttta tcgcaaaatt agcacgtttt tcatccgacc attctgtgat
    16981 gtgattttcc tcttcatcaa ctaagaaaaa atcgttttgc gaaccatgta cttttgtaaa
    17041 gtgaattgtt tccattacgt caagcaacct cctctatttg gaattacgtc tataatacca
    17101 catcttaaat taaaaaagct tggggaacct ccttttgaaa tgagtaggat tttccccaag
    17161 cgagcattaa gcttcgtagt gttttacaac aatatccgca cagcggccac acagtgttgg
    17221 atgttttgga tttacgccta catctttttt cactacacgg caacgttcac aagtttcgcc
    17281 ttctgctacg gtaatttgaa cagctacttg atttgatttg aatgcagatt ctggtgcatt
    17341 ttctaaacct tccacaagtt caaagtcaga aacgataaac agttgtgcaa aatcgccttc
    17401 taaagaatca aatagtgttt tcgcttcgcc gtctacatat aaagttactt tagcaagcat
    17461 tgatttaccg attaattttt cgttacgagc gaattctaac gctttttgga cgttatcacg
    17521 gatttgcatg aatgcgtccc atttcgctgt aatttcttcg ctatccgcta atactttaac
    17581 ctctggcaag tcttgcaagt gaatactttc cacgccttca ccaatcaagc tattccaaac
    17641 ttcttctgtt gtatgcggta aaattggagc aagtaatttg gttaacgtaa caaccgcttc
    17701 ataaaagaca gtttgcatag cacgacgatc atgactatca gccgcttcga tgtaaacaac
    17761 atctttggca aagtccatat aaaattggct taattctact gtacagaaat tattgatttg
    17821 gtggtaaata gtagagaatt cgaaagcttc atagttatcc ttcacatttt tcactaaatc
    17881 atttaattta attagcatat atttgtcaac ttcacgtaag ttttcataag aaacggcgtt
    17941 agtagttgga ttaaagtcat taatatttcc tagtaagaaa cgcattgtgt tacggatttt
    18001 acggtatact tcggatactt gttttaagat ttcatcacta acacgaacat cagcttgata
    18061 atctacagaa gcaacccaaa ggcgaacaat atccgcacca agttgtttaa ttactttgcc
    18121 tggaagtaaa gtatttccaa gtgatttact cattttgcga ccttccccat ccagtgcgaa
    18181 accatggctt agcacgttac gataaggcgc ttcaccagtg attgctacag cagttgttaa
    18241 ggatgagttg aaccagccac gatattggtc agagccttcc atatataaat cagccggacg
    18301 acttaattct gggcgagcat tcagcacagc ttgatgacta gaacctgaat caaaccaaac
    18361 gtccataata tcggtttctt ttgtaaattc tccatttgga ctacctggat gcgtaaagcc
    18421 agcaggtaat aaatctttca catcgcgttc aaaccaaaca ttcgaaccat gctcacggaa
    18481 aagttcagaa atgtgattaa ttgtttcgtc tgtgataatc gcttccccat tttccgcata
    18541 gaaaatcggt agtggaacgc cccatgcacg ttgacgagaa ataacccagt cgccgcggtc
    18601 gcgaaccata ttgaataaac gtgtttcacc ccatgctgga gtccaattaa cacctttaac
    18661 agcagcgagt aaatcatcac ggaatgcgtc aatcgaagca aaccactgcg ctgttgcacg
    18721 gaaaataact ggttttttcg tacgccaatc atgtggataa gagtgagtga tgaattccat
    18781 ttttagtaat gcgcccactt cttctagttt ttctgtgacc attttgttcg ctgtatcgta
    18841 aaatacgcct tcaaatcccg gtgcttcctc tgtgaataca ccatgatcat ctagtggagc
    18901 aagtacttct aaatcgtatt ttttcccgat taaaaagtca tcttccccgt gtccaggagc
    18961 cgtatgaacc gcaccagtac cggcttcagc agtagcatgt tccccgttca ttactaagga
    19021 atcacggtca tagaatgggt gtttagttac aacgcggtca agttcagaac cacgaactgt
    19081 tttcactact gtcgcatctt caaagcctag tttttcgcgt aagcttggta aaagtgcttc
    19141 tgctacaaca tatttttccc cagcggattc aattactaca tagtccaaat cagggttaac
    19201 agtaataccc atgtttgcag gaattgtcca aggagttgtt gtccagataa cgatattcgt
    19261 tccttcatct agtacacctt ttccgtcagt aactttaaag gcaacaaaaa tcgaagcaga
    19321 ttttttatcc tgatattcga tttctgcttc tgccagcgca gattcactag aaggagacca
    19381 ataaaccggt tttttacctt tgtaaatgta accttttttc gccatttcac cgaagacttt
    19441 gatttgctct gcttcgtatt ctggtaaaag tgtaatgtaa ggattttccc agtcaccgtt
    19501 aattccaagt cgtttgaatc ctgtacgttg accgtctact tgcgtcattg catattcggc
    19561 acatagtttg cggaattcag caatagacat ttctttccgt ttaacgcctt ttttggcgat
    19621 agctgtctca attggtagtc cgtgtgtgtc ccaaccagga acatacgggg agctgaagcc
    19681 agccattgat ttataacgga cgataatatc tttgattgtt ttgtttagag cgtgacccat
    19741 gtgaagctca ccgttagcat aaggaggccc atcatgcaaa atgtacgcct tgcgtccagc
    19801 atttttttct tgaatcttct catatagttt ttcttcttcc cattttgctt gccattcagg
    19861 ttctttgttt ggcaggtttc cacgcatcgg aaaatctgtt tttggcatta ataacgtatc
    19921 tttatattcc atactctatt ctcctttaaa tctttatttt taaacacaaa aaaatctctc
    19981 ccaaaaaagg gacgagattc gcggtaccac ccttgttgac atgcaatttt gttgcttgcc
    20041 cacttcatta atgccataac gctggctcgc gctaacactt actcaagcga ttgctttttc
    20101 gggttagaac taaagagtga tttctatttt ttagaggata gttggtctcg caccatttac
    20161 caactcgctt catatccttt gtctaaaaaa tttacttgtc tcttataatc gtttttaacg
    20221 ttcttctgat tcagcagctt cgacttcttt aatagacgct aattctgttg catctacatc
    20281 gtaagccatc atttgctgcc aatcttcact tttaattaaa tccatttgcg cttctactaa
    20341 catacgcaga cgctcgcgga atactttaga ttgacgtttt aagtcttcaa tttcaatcgc
    20401 gattttacga gctttagaaa gtgagtcgct taaaattcgg tctgcatttt tttcagcttc
    20461 acggataata agttttgctt ctttttcagc ggaagctttc acttcttcgg cagctgtttg
    20521 tgccacgatt aatgatttgt ttaatgtttc ttcaatgttt gtaaaatgac ctaaacgttc
    20581 ttcactatta tttaaagtgt cctcaatacg ctttttctct ttaataactt gttcataatc
    20641 tttaatgatt tgatcgagga agtcatttac ttcgtcttcg tcataacctc taaaaccacg
    20701 ggtaaactct ttgttatgta tatccagcgg cgataatggc atatctagca cctccatacg
    20761 actatttgtt tataaatacc taacatacat tctaccatag ttactagctt tttcctagaa
    20821 tttatattga aaaatggtta gattaaaaat ccagctttat ctagcgcctt aatcgcttgt
    20881 tctaattgtt ctttcgtatc tgcttcaatc gtatgtaaat gtgttccatc cgttaaacca
    20941 gacagcattg ttgctcctgt tgtttgcaat ttccgcacaa atttctctac atcaaaacgg
    21001 ctttttaaat gtagtgaagc ggtgatttcg ccgtatattg gatgatccac aatcacatca
    21061 ataatggaaa caccgtgatc taccaaaata tttagttcct cggcagcttg ttctttcgta
    21121 tgtttcacgg caataacgcg cctttcccct gtataacttg tttctttcgc ataaatatag
    21181 ccttgtgggg tagccataat tggttcattg ccagctttta acaaagaaat atcttgaaca
    21241 atcacttggc ggctaacatt tgttttctgt gctaattgat ttccagaaat tggcgcctcg
    21301 gcttctttta gccattttaa aatcatttgc ctacgcgtat ctcctaatat ttttttcatc
    21361 ttatcacctt tttcgtaata atttatcgat ttcttcttta aaaataatac tatcgtttaa
    21421 ttcattttct cttccaaaag ataagcggat aaaacggttt gcttcttctg ttgtttttcc
    21481 agtagcgatt aatgttctgg acggagctaa atcacgtaaa ctacatgcac ttgtcgtcga
    21541 gatttgaata tctgcttcgt ttaaagcaag taacgcttcc tgaccttgca tatttggcaa
    21601 agtaagtcct aaaatatacg gcgatgtatt gggtccacct tccacttcta ctcgcgcttc
    21661 taatgtgtcg caaatcgcag cttttagttt catagctcta atcgcttctt gttctctatt
    21721 ttctattata tcataggcgg cagttgtaaa ggcagcaata gctggaacat ttactgtccc
    21781 cggtctaaag ccaaattcat gatgtacatc tggcaaaact gcctgcaaag gagaatctgg
    21841 tttcataaaa agtattcccg ccccttttgg tccataaatt ttatgcgatg aaatactaaa
    21901 actagtggca tcacttaaat ctaaatcaat ttttccaaag gattgaacga tatcggtatg
    21961 aaaaaagaca cctgcttttt tagcaatatg agctagttcc gcaattggtt ggatggttcc
    22021 gatttccgaa ttaacatgtt gaataataat aagccccgtc tcagcagaaa tcattttttc
    22081 taaagtagct ggatttactt gcccaaacga atcaactggt aatactttaa tccgacactt
    22141 ccccgcttgt tcgagtgcca ttagttgctg ccaaactgaa gcgtgttcta gcggacttac
    22201 gagcacttct ttcttatcag ttgtatggat tagcgtttgg atggcaattt gattactctc
    22261 tgttccacca ctcgtaaata aaatcccgcg gtttggaact tgtaataact cagaaaaact
    22321 ttcccggcat ttttctaaaa gggccgctga tttcgtccca gcatcatgta aactctccga
    22381 attagcaaag aattctcgcg atgcatccat aaaaacttgt aaagaagctt cactcatttt
    22441 cgtagtagcc gcatggtcaa agtaaatcat ctctttatct ctcccttaaa attttatact
    22501 tgaatttagt ttgattttat gtgattatag atgacaagac atctgtatat tcattaagaa
    22561 gtatacaatt aatcgaacct actatgcaag aggtggaaac aatgacaaaa gaacgagtga
    22621 ttatcattgg gagcggtatc gcaggttgca ctgctgcctt cagattaatg cacgactatg
    22681 atgtgacaat aatcacaaaa ggtctcaaag aagaaagtaa ttcgatgctc gctcaaggcg
    22741 gtgtcgcagc agctgtgtcc aaaaacgata ccccgaaaaa gcattttagc gataccttcc
    22801 aagccggttg ttttcataat aaagttctcg cagtaaatca actcgttacc aacggtccaa
    22861 tcgttatcca aaaattaatc gcagaaggga tgacttttga cgaacaaaat ggtgaacttt
    22921 cgcttggttt agaaggcgca caccaattgc cacgaatttt acatactggc ggtgatcaaa
    22981 ccggcaaatt tcttactact tttttacaag aaaaattaac aaacattcac tggcaagagc
    23041 aaaaaatggc tatcgaaatt ataaaacaga acgattcggc tatcggcgtg cattgtttag
    23101 ataaagaaaa tcgactacat acttattacg gagaacatat tattttagca agcggcggac
    23161 ttggacaact ttttccagtt acgacgaatg cggcgacaat ttccggtgat ggtttagcac
    23221 tggcttaccg ggctggtgct aagctaaccg atatggaatt tatccaattt catcccactc
    23281 ttctctttct aaacggacgt tgtcatgggc ttatttcaga agcggtccgc ggtgaaggag
    23341 ccaaacttat tcgcgcagat ggttcggcgg taatgactga tgttcacccg agagctgacc
    23401 ttgcgccgcg cgatattgtt gctgcgacgc tatttgcaga aatacaagat ggcaatgagg
    23461 ttttccttga tatcacgcca attcctaatt ttgaagaacg ttttccagga attactgcta
    23521 acttggatgc atatcacgtc ccgtttcgtg aaacaaagcg gattccggtt catcctggcg
    23581 cacatttttt aatgggtggt attcgtaccg acctatcagg taaaacgaac attcccggtt
    23641 tgtatgccat tggtgaggtt gcaaatgcag gtgtgcacgg cgctaaccgt ctcgccagta
    23701 actccctcct tgaaacgctc gtctttggtg aaaaagtggc tgaatacatt ctcacgcaaa
    23761 aaacaaacct aatagaccat ccagaaatcc ctctttcgaa ccaaacccga acaccccatt
    23821 taccagataa acaattactt caagagaaaa tctgggaaac gcttggcatc acaagaaaac
    23881 cagaaaaaat caccgaattt cttcattggc ttactgattt cgattacgca aatcacactc
    23941 gagaaacagc ggaaattagc cacatgctta tcaccgcaaa aataatcgcc gaaagcgcgc
    24001 tcaaacgaac agaaagtctc ggcgcacatc gaatattaaa aggagtaata aaatgaattc
    24061 catacttatg aatcaagcaa ttcaagcatt tttactagaa gatatcggtc aacatgactt
    24121 aagtgcagaa actgttttcc cccgtgacac aatgggggaa ggtgttttcc tagcaaaaga
    24181 aacaggtatt ctttgtggca tttccatccc accgaaagtt tacgaactgc tcggtggaaa
    24241 tatacaattt gaagcttata aaaaagatgg tgactggatt caaaaaggcg atattatcgc
    24301 ggctgttacg gctccagttc gcacgttact ttccggtgag cgggtcattt taaatttaat
    24361 gcaacggatg agtggtatcg ctagccaaac taattttgct gtcaaacaac tggatgattc
    24421 cgctattcga atttgcgaca cgaggaaaac agcgcccggt ctgcgtgcct tcgataaata
    24481 cgcggtacag actggtggcg gctttaatca tcgcaatggt ctatacgatg gtgttatgct
    24541 aaaagacaac cacatcgcct tctctggagg tattacaagt gctgtatcta ctgtacggga
    24601 aaaacttggc catatggtaa aaatcgaagt ggaaacggaa actgctgaac aagtaaaaga
    24661 agccgttcaa gccggcgcag atatcataat gtttgataat cgcacaccgg aagaaatcaa
    24721 gcaactggtt aagctagttc ccccgcacat tactacagaa atttccggta atgtcacttt
    24781 agaaaatatt catcgttata agggttctgg ggcaaattac ctttctttag gctccttaac
    24841 gcattccgtt cgtgcatttg acatcagttt caatagcaaa ggaggaataa aggcatgaat
    24901 ttactagaaa cggtcgaaca agatacaatg ccaactcatt ataagcaaat gacgcaggcc
    24961 gaaatgattg cccgcgtcac ggaaattaaa gcccagcttg gcgagaatct ctttatcccc
    25021 tgccaccatt atcaaaaaga tgaggtcgtt ccatttgccg atgcgattgg cgattcctta
    25081 caattagcgc aaattgctgc acaaaataaa aaagccaaac atatcgtttt ttgcggtgtt
    25141 cattttatgg cagaaacagc ggatatgctt acgacaagcg agcagattgt tactttgccg
    25201 gatatgcgcg ctggttgttc gatggcagat atggcggaca ttcatcagct aacaaatgct
    25261 tggccaaaac tgcaaaccct tttcggcgat acgattttac ctgtcactta cattaattcc
    25321 actgccgcaa ttaaatcctt cgtcggtgaa catggtggga ctacggtgac atctagtaac
    25381 gcaacaaaaa ttgtctcatg ggcgctcgaa caaaaagagc ggattttctt tcttccggat
    25441 caacatctag gtcggaacac tgcgttcgaa ctaggcattc ccctcgaaca tatggcaatt
    25501 tggaacccga taaaaaatga actggaatat gagggcaatt tggatgattg taaagtcatt
    25561 ctgtggaaag gctactgctc tgttcaccaa catttcaccg tcaaaaatat cgaaaacatt
    25621 cgtaaaaaca atcctaaaat gcggattatt gttcatcccg aatgcaccca tgaagtcgtt
    25681 tctttagcag atgattccgg ttcaacgaaa aaaattgtaa ctgaaataaa caatgccgca
    25741 cctggcacag aatgggcagt cggtaccgaa gccaatttag ttggtcgcat tatccaagaa
    25801 aacccagata aaaaaatcgt ctcgctaaat ccgtttatgt gcccttgtat gaccatgaat
    25861 cgaattgatt taccacattt actctggaca ctagaagcta tccaaaacgg cgaacaacga
    25921 aaccaaatca aagtcgataa acagacaacc aaatttgcct taaaagcctt agaaagaatg
    25981 cttcaattaa gctaataaaa aaacgaaagc agcaactgct ttcgtttcag ctcctttata
    26041 aaagcttcta tttgtcaatc taaattttaa tctgtagaac ttactcgagc atatgctact
    26101 atcatgacta aaaagcaact cttttcacaa ccatttaata tccaccctaa ctatacattg
    26161 aaaaaaatgc atttacactg atggttttgt gtatattttg ggtataccct ttttttacat
    26221 gaatcagctg taccaaaata taaaagcaaa aaagagaaga t
//
LOCUS       DASEAA010000022        25912 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.022, whole genome shotgun sequence.
ACCESSION   DASEAA010000022 DASEAA010000000
VERSION     DASEAA010000022.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 25912)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25912)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25912
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.022"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..184
                     /locus_tag="U0342_000767"
     CDS             <1..184
                     /locus_tag="U0342_000767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422125.1"
                     /translation="QRLKDKADTAKMKYHRNLIDRETAKKQIIPYAEAFNSRSKEIAK
                     KYNQKPKLLSVAAFLR"
     gene            314..544
                     /locus_tag="U0342_000768"
     CDS             314..544
                     /locus_tag="U0342_000768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422126.1"
                     /translation="MKKENERSIDENLNDDLLDLEISKALEEAKTDEEYKKIIRATLG
                     KWLNNLQEGNIRLESVNDLKTLIEADRLLRRD"
     gene            572..805
                     /locus_tag="U0342_000769"
     CDS             572..805
                     /locus_tag="U0342_000769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422127.1"
                     /translation="MTLIFWTKNGQEMEFDLVENVEIDEKIITFDYYGEGEKRGVAFI
                     LNNLAGMAVEDENSESESKDGASWFKVYRGYVK"
     gene            842..1711
                     /locus_tag="U0342_000770"
     CDS             842..1711
                     /locus_tag="U0342_000770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987328.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422128.1"
                     /translation="MARKRDPRRIEAKNMWLESGGKMKLVDIANKLGCSSNQIRKWKS
                     TEKWSIDDEIESVPKSNSNVTNEKERYHKLKGNSNAIGNRGGAPPGNGNAVGNVGGSA
                     PIGNKNAVTTGEFETLSWEFLTEREQQLYESMDGNLVTHINQTIRELEIRKRRMMERI
                     ANIEKSMSDIERSTLKQLREKEYIGEKNGKKVILHRQELVTVEERERVTAKIDRILSI
                     ENSLNNVTSQLIRAIKQQSDLEQAEVKKGLIRSQTSLNKERIIKPEAASTSPDFSQMS
                     TEELKEYAASLKQ"
     gene            1689..3149
                     /gene="terL"
                     /locus_tag="U0342_000771"
     CDS             1689..3149
                     /gene="terL"
                     /locus_tag="U0342_000771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019168086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage terminase large subunit"
                     /protein_id="HEM2422129.1"
                     /translation="MLLASNNKEIDREYLYDEAVREIARREFAEFFFLSHGKRYNLLR
                     HQKLIADKLQKIIDGEQKHYIIEIPPQHGKSTVITETFPAYFLMRNPDKLAMVVSYSE
                     ELFKKFGRKNREKFRMYANDLFGLNISSMSSSVSNWGIEDHLGELYSTSILGGATGRG
                     SDLLIVDDPVKNRADADSKTMRDKVYSEWQDTFYSRLSASGSVIIIMTRWHEDDLAGR
                     LLKEMSLPWEEIKIPAIAEENDLLGRKIGEALAPEIGKDEKWAAQTKEVTGSRGWTAL
                     YQQRPSPADGNIFKRHWIKYYVPDAEFKKKYGLGDEVKILPRLFDKSAQSWDLTFKDT
                     KNSDFVAGHVWKRKQGEFFFIDREHDRMDLPASINAINRMTTKHPDVIAKYIEDKANG
                     PAVMQVLKGRLTGMIPVDPEGGKEARANAVSPLFEAGNVYFPHPLYKPWSEDVVEELV
                     AFPNTSHDDDVDALTQALVKLMIGQQSLLDRYKNLM"
     gene            3163..4548
                     /locus_tag="U0342_000772"
     CDS             3163..4548
                     /locus_tag="U0342_000772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1073 domain-containing protein"
                     /protein_id="HEM2422130.1"
                     /translation="MYSIDKAKQAKIDSKIVNRNDFMVGHGKANSRDKLTRQVPGNGQ
                     KLDIKACENLYASNSIAMNIIDIISEDMVRAGWSLKTDNKEIKKNIESKWRKLKTKDR
                     FQKLYADKRLYGDGFLSIGVVSSNREQADLSTAIDPKTIKSIPYINTFNTQKVTQLYL
                     NQDMFSEHFGEVEFFEVNRVSQLGEEILSGTTASTSEQIHRSRIIHEQGLRFEGETKG
                     RSIFESLYDIITVMDTSLWSVGQILYDFAFKVYKTDDIDTLNKDDKANLTAMLDFMFR
                     TEALAIIKGDEQLTKESTNVSGMKDLLDYGWDYLAGAVRMPKTVLKGQEAGTLTGAQY
                     DVMNYYARVSSIQENRLRPQLEYLTRLLMWASEDCGPSIDPDSFEWAIEFNPLWNLDS
                     KTDAEVRKLTAEADQIYIVNGVLDPDEVKETRFGRFGLENSSKFSGDSAEIDKLAKLV
                     YDAYAKKSADG"
     gene            4541..5950
                     /locus_tag="U0342_000773"
     CDS             4541..5950
                     /locus_tag="U0342_000773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2422131.1"
                     /translation="MVKRRVPATRYPHNLEKSYTKQLVKLSTALSDMFLHEFDTSISA
                     ILKTSQNRSDAFREDGISDAVQAVLNKVKALSFGLFNPRDKYSIASKHVKAINTTNKS
                     QIGNQVRSQGIEPTQSEPWLSEFMDASIAENVSYIGSIADEFNAKTEQIILRGVKNGQ
                     SLKDMRDELVTQVGTSKNKAEFIANDQTGTIFGQMTAERHKKAGIPGFTWRDSGDAAV
                     RPSHHARNGKVYSYDDPTAQIPGTDYRCRCTAGPEFDESVVKAATNERKQQELEDKAT
                     LKNAYSEVAQAAQKAPDNVKDLISSNITANSFEIVRDNNIAYAYRPSTKKIIINPSNK
                     AIKYYNKQEILLHESGHLIDYAKYKSWENKSFTISTQIEKKVAKWDEINELFSHEKWA
                     NDDYFSDICSALTENRVKGNAGHAASYWNRKGSIEKEIFANLFAMLAMNKQESIAMVK
                     KQFPMIYGSFIKMLEGELK"
     gene            5947..6117
                     /locus_tag="U0342_000774"
     CDS             5947..6117
                     /locus_tag="U0342_000774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422132.1"
                     /translation="MINYKKWLDSMMSTEDGKILFERYKKLYGHYPPFLLDATEKEQW
                     DEIKRLIKDADK"
     gene            6166..7275
                     /locus_tag="U0342_000775"
     CDS             6166..7275
                     /locus_tag="U0342_000775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2213 domain-containing protein"
                     /protein_id="HEM2422133.1"
                     /translation="MKVQRFDKSFITDSNMQVTKEGYLTVKAPVTRPGVFPYQRADGS
                     IQLEAKLPENLFASETIQSLNAKPVTNDHPNEPVNASNHQKYAKGTTHTDACVSDNKL
                     FVSFTITDSKTIQAVQDGKRELSLGFESEVVKESGTYAGERYDAVQKSVLVNHLAIVD
                     EGRVGPEIAIRGDSAAFMIDSKNTKKQGGNKMPVLKIDSKEYEVDSVVKSRFDALEAK
                     LDAANAKAAKVDALEGERDGLKTKLDKAESDLEEANKNTMTEEDIENAVTERAALLDS
                     AKVMLGDSFDFKGKTAREIKEAAIKTSNDSFDSKDKSDEYVNAFYDAMTVTADAKGYT
                     ADANFNKGKPDPKELEEIEKKKAARQNFGKKGDNK"
     gene            7275..7727
                     /locus_tag="U0342_000776"
     CDS             7275..7727
                     /locus_tag="U0342_000776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422134.1"
                     /translation="MSIPTGQEYMMPELGLGKIASYQRSQVDSAAVKANIKFGQAVQV
                     LDDEASPLEATGDFYGVAVAKNYVDEYTDDKVGVYKPSEAVPVLRQGTITVIVDEDVK
                     SGEKAVVNTDTSNFLPSTTAKTTKTGVIGVFKSTTSKDGLAKLEINLP"
     gene            7748..8653
                     /locus_tag="U0342_000777"
     CDS             7748..8653
                     /locus_tag="U0342_000777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="encapsulin"
                     /protein_id="HEM2422135.1"
                     /translation="MPGKITATIEARDLQAIDNVIYEPKQEELTARSVFPQKFDVNEG
                     AESYSFDVMTRSGAAKIIANGADDLPLVDVDMVRKSVPIYSIGIGLSYTVQDLRAARM
                     QGTTVDAAKAATVRRAIAEKENSIAFRGEKKYAIKGAFEATGIQIDVSPTTGVGNVSK
                     WEKKTAEQIIDEIGAAHTKITVLPGYGTASLKLCLPPKQFELINKKRYSNEDSRSVLK
                     VLQDNAWFSAIVRVPDLAGMGTSSSDSFAVIHDSNETAELIIPMDITRHPEEYSFPRT
                     KVPFEERTAGVVVRFPAAIVRVDGI"
     gene            8676..9062
                     /locus_tag="U0342_000778"
     CDS             8676..9062
                     /locus_tag="U0342_000778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731518.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422136.1"
                     /translation="MIIENKGDYVRFLGKVRLVPGTNNIDNEHAEELEQALKHPLNIH
                     LIESDELKVPDNLQQDSSLNDFNATKAALLVKDTFDLGALNEFLAEETTNGNRKTVID
                     AINKQIESISNPPQEERYVPEEDFGK"
     gene            9074..9409
                     /locus_tag="U0342_000779"
     CDS             9074..9409
                     /locus_tag="U0342_000779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4054 domain-containing protein"
                     /protein_id="HEM2422137.1"
                     /translation="MKTDVSKLKLTASALASVSDDSLQVHIDDSYLEVQEKGFPEKFE
                     ERANRYLAAHLATLANKNVKSEAVGSLKREYYEVKGDSGLLSTEYGQEYARLLKEANG
                     GSGISMVVV"
     gene            9409..10008
                     /locus_tag="U0342_000780"
     CDS             9409..10008
                     /locus_tag="U0342_000780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422138.1"
                     /translation="MKVTTDKSTMNKAIRELDQLDRYSLQIGLFGEDDSFIQMIAGVH
                     EFGLTIRPKGKYLTIPTPEAGDRRARDIPGLFKPRGKNILAVAGPDGKLTVMFYLKKE
                     VNIPERSFLRSTFDEKSNKWGELFEGWIDDIIHGKLSAEQVYNRLGAKIVDDIQMKIV
                     EIQTPAKSAATLARNPRKNNPLIVTGKMKNSVTWKVMKS"
     gene            10008..10382
                     /locus_tag="U0342_000781"
     CDS             10008..10382
                     /locus_tag="U0342_000781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422139.1"
                     /translation="MEKMVFQSLLDSFGVPLTVLKKQEKGGEFVNGEWVVSQLDETSK
                     IEVNEPFVPSSLMTQMPQTSAYMAARYEKYEMIWFSSQVLPLKSKVIHKGISYSVEDA
                     IPFTDYSDVTQYGCKAVSVSAK"
     gene            10372..10854
                     /locus_tag="U0342_000782"
     CDS             10372..10854
                     /locus_tag="U0342_000782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731522.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422140.1"
                     /translation="MPNDGYDYGILVKTLIGAVNELSGGLQLIESASGGEQPEYPFCQ
                     YTITSPYIAISPDIVEGEQFEIVISLTWRALSGHQALNLANITNKYFRSQKGRFFMQE
                     NGGIVVVSVQNSGLRDTFISIEYERSAGIDLRLRVVDSYSSEIQEIDNISFTNENLGG
                     "
     gene            10859..11854
                     /locus_tag="U0342_000783"
     CDS             10859..11854
                     /locus_tag="U0342_000783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3383 family protein"
                     /protein_id="HEM2422141.1"
                     /translation="MVETITDVRVHISVLYPSPRIGLGRPAIFVKGTAMGYKEYTTLE
                     ELKDTFADTTEVYAKAKAVFLQKDRPDTVAVITYEDTKLLEAAEAYFLKSWHFALLAE
                     FKAADALALSNLIEEQKFKFAVFQVTAVADITPLAKNTRTIAIVHSKTGEKLDAALIG
                     NVASLPVGSATWKGRHGLTGITSEELKVSEIDAIQKVGGMCYIEKAGIAQTSEGKTVS
                     GEFIDSIHGDDWIKATIETRLQKLLTETDKLTFDARGIALLQSELTTVLNEGFANGII
                     DSNDETGEPNFSITALQRSDLNDDDIAKRNYKGLSFRYKRSGAIHSVDVYGEVEV"
     gene            11871..12269
                     /locus_tag="U0342_000784"
     CDS             11871..12269
                     /locus_tag="U0342_000784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422142.1"
                     /translation="MSEVMATYDANTVSTIINGISIFGFSDGDMVSCSKDSNNVEIKS
                     DAQGNSSAAVNNDKMGTIKVDLAQTSPCYPKLIDIANRQLKVPIYVINGKEKIGGSMA
                     FIEKLPDAGFGKSVGTRSFTFKVLDYTHTA"
     gene            12322..12678
                     /locus_tag="U0342_000785"
     CDS             12322..12678
                     /locus_tag="U0342_000785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422143.1"
                     /translation="MAEKKNNATKSDVAAAQAAQKIPKAEKKPLDKFGKKEVFKASDK
                     VEYTFQFPGTRAAQAILDESKNGYGVIVDSVYYERIMKDVIVEPLGLDLDYWDEHEGY
                     REVMNAADNFLGGLLN"
     gene            12855..17885
                     /locus_tag="U0342_000786"
     CDS             12855..17885
                     /locus_tag="U0342_000786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEM2422144.1"
                     /translation="MSGALRKTTIEIDWKINNQMLQKADEETDRIVRSADKMERNFNQ
                     SARSVDGTTRAIHKQSNEVRESATRVDKLDKNFKEAKNSANQFGNSAKGAVDKTKNSV
                     DSAKNSVNKLDNEIDKTTKNANSKFSALKTTIIAVGSALLVAGGKAMFNYASDTNESL
                     NKVDVAFKGNAKNVKRWSKTTLDNIGLAQGTALDLAATYGDMSTSMGLNTQEAEKMST
                     SMVDLAGNLASFKNIDIDRANTALNGVFTGETEALKSLGIVMTQTNLEQFALETGAGK
                     VAKSSTEVTKQNIAREKAQKKLNEAIKEHGKNSLEAREAQNKLQEIQAKTSESAKVNL
                     KDMKQDELVRLRYNYVMKQTTNAHGDFKNTSDQAANASRVFSESVKELASNAGQFLLP
                     VITPLIIKASDFTKKLSDIPSAVKGMKEKFKPAFEVFESVGDFFKKDLIPSAKELAKS
                     MGPGFIEGGVLAFKGLGIVLNTTVIPAFKAVTKFTRENPDSMKRIAKYATVGVAGFLG
                     FKLVKNTIDKVTVAIGKMNSKLLSIGPSAAAGATEANVAMSTIGTTTNGAGGVVLPGG
                     KGKGKIKLFSKATAGLKSMGKFGKLASGVGVLGVGLSATELIGMNKDNAGEKTGGFGG
                     SLGGMAGGAAIGTAIAPGIGTAIGGAIGAFAGTALGKELGKYVQKEGPKILDKFKTGW
                     KGLSKIAEEHPILGANINVINKTIDAAKKGIKAVGDTHKAVWNISKAMVADPLKIDAG
                     GKGVSKDSAKAMNKYLSAEQKLQNDSTSRIVDGKSISGNEYKENMKTHDNMSIQLVNA
                     TDKKSVKANNDWDRLVASGAVSKDVASAKKHTNNETASINKADIKKNTEELKRLEKSR
                     FEEQRKIEENAAGAILKIKENAKKKGVKLSKEEKVEIEQINKDKVTAIQVSESTYSKK
                     SAEIQKKQRKEATIALSKSAKEQKIILGNLENSKSEMSAKAAASVVKNSAKQRNATVK
                     EANKEFKDTKRILDEKRFVTGEIGEKEYREAIKQAKKKKDGTIDEAEKMHKEVVNQAQ
                     KQAKGHLKEVDWETGETLSKWDQFKKATSETFNSIKDAALGKWNELSSATVNIFGGMK
                     DASLRVWDSFKTNLYKMVNNVITAVNKVLSFFSIGSIPLLGNGNIGASQENKLSAKDK
                     KTYHSTSQSGNLAMNYTGSDSAAGQIMAGEEGFEIAYNKNSAQARILGKNGPEITTVA
                     PGTKILNHAESKKMMSGGMGAGTVLPGFAKGTNGAVESLKSLGSNAIDSVKNAGNKVK
                     DIASSAWDFATDPVAGVNKLMAKYNKLPNNSPMANMAGGMFKYFGKGAGDWLKEKLAD
                     VFMTSDGGGEGGGMFSPHFGSPFRMTSGYGPRTVFGKQEFHKGIDYGAPTGTPLPAQY
                     GGKVSRAGTAGGFGNLVSITAGKGIENLYGHLSKILTSAGSVVKAGQIIGLVGSTGRS
                     TGPHVHYQVNQNGKPVNPSSSLGGGSFNGKGGSKAVNGWVQQAIGLTGVPASWSNALA
                     TIAMKESNGNPNAVNNWDINAKRGMASQGLMQTIPATFNAYKMKGHGNILNPVDNIIA
                     AIGYIKARYGTVFNVPGIKALASGKAYKGYKRGGRPPVNETVLVGEEGPELFETDTAG
                     TVHTAQKTKQMLNKSSSGTTINFNPTINITVEGGSSESESSIRKTVRAEMEKLFEKLV
                     GIYSPGEV"
     gene            17891..18439
                     /locus_tag="U0342_000787"
     CDS             17891..18439
                     /locus_tag="U0342_000787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2422145.1"
                     /translation="MVATIGSVKLVNTNESESSPFTITDNPVETGSPVSDHVQRETKT
                     LEISGFLLGATAEKDYATLKSYAEKGTIVSFRGRVYFKNVLISNLSKSYNTIKNGFEI
                     TVSLRDLRRASTPWVRKKKKSSGKKQSVKSKKSPGTYITVKKGDCYWKWWKRYGTSIA
                     QLRKWNKWPDRRIPIGKRARVK"
     gene            18439..18810
                     /locus_tag="U0342_000788"
     CDS             18439..18810
                     /locus_tag="U0342_000788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422146.1"
                     /translation="MAIRNYIPVELDNIPELFEFDFDDGKSFLFGINYAESQDLFSVD
                     LYSIEGEPIALGERLVLNERLWADIIDDRLPSVDLVPLDESGKETKITKDNFTKTVFL
                     YFDDLAPEMELPTLDNEVSMI"
     gene            18816..19622
                     /locus_tag="U0342_000789"
     CDS             18816..19622
                     /locus_tag="U0342_000789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422147.1"
                     /translation="MLWMREIYVHINNGSEYATIHEKNEASGSLKINFSIPFSDEPKP
                     AECEVVIYNLSRNSSNKIKKGSTISVTAGYQGDKGLLSQGKVTKVSTVPSGVDKITTI
                     KFSEGVDYSDKKDVNITFKKGTSAKSIIQRIATKAGIKIYQIKLPTNKIYKSGYTADG
                     DALSVIEEIVKDCKAAIYYRRGNLVIRSIKSGDDERFTLNSSTGLISSPERLENDEYS
                     GWSFQSLLQHRIATASIITLKSKTVNGTFRVKNGMHNYDGSTFTTQCEVV"
     gene            19623..19961
                     /locus_tag="U0342_000790"
     CDS             19623..19961
                     /locus_tag="U0342_000790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422148.1"
                     /translation="MAQDTKFFDSFIRLVNSSVSVLLMCRVVNYDASNKRADVQPLNL
                     KPNGAKRAMILDALVLKHTEEDISEGKIVAIVFSDCELDNINGSTDFKPESSRQHSVN
                     DAVVVGVWDV"
     gene            19958..20320
                     /locus_tag="U0342_000791"
     CDS             19958..20320
                     /locus_tag="U0342_000791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2634 domain-containing protein"
                     /protein_id="HEM2422149.1"
                     /translation="MKDLLIDSNGDIVVSDNDILMTDGVNDIVQCVRMILQTREGEFY
                     FDENSGMNHENLFTKKPNFDYIKQDVITAIEEQEERISSVDSVLFDFDKDTRKLHVSI
                     KMTGLDGPVSVEEVILNA"
     gene            20313..21464
                     /locus_tag="U0342_000792"
     CDS             20313..21464
                     /locus_tag="U0342_000792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="baseplate J/gp47 family protein"
                     /protein_id="HEM2422150.1"
                     /translation="MLDEHGFKRKTYDELLTDMESKAKELFGEDINLSSHSALGVFLR
                     IIAWFMSLIHELAERVYNSGFISSADGVQLDRLGSNISVLREPAMPAVVTLELTGNAG
                     YTIEEGVQFKTKNDVVFEMIDVVTLDDKGHGIGQAISQIYSDKANVPANSITVVAEPS
                     EDILTVNNPNKADGGSEKENDTSYRARIRLATSASPGPPVNGIISALNQVSGVRSVSI
                     IENNSIDLDAYNNPAKSVHIYCLGGIDEEIGEAIFNSVAAGIQTVGKVTVKVKDLSGF
                     EHSVYYDRATSLSIYAHIIVDVNSKFEDDGGDVIKQAVLNYINSLNMGEMVIHSYIYP
                     DLYQIPGITVANVKLGKDINNLASADILVNTDEAASIRWEDIEVTINVR"
     gene            21454..22095
                     /locus_tag="U0342_000793"
     CDS             21454..22095
                     /locus_tag="U0342_000793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422151.1"
                     /translation="MSVKDFLGKLTDAFTKSEKSNIGKLFIIVDQQISALTTALEKTE
                     AWRDIDNAQGKVLNNLGENVGQNRGRATDEVYRVLIRGKVARNASDGTTNKIIHAIAK
                     SLDCNYKDIQIINANDSNSSDEHEPAAIIIKKIPLSALNAVGLSTNQFLQLVNSLKSG
                     GVRVAYINLEGSFSFAKGATEEISDDGFSELDQILGGTLGGLFTPSDDFKLPI"
     gene            22116..22844
                     /locus_tag="U0342_000794"
     CDS             22116..22844
                     /locus_tag="U0342_000794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422152.1"
                     /translation="MSRFNANLARWEATGTKPPDSTIQNGWLAGTKPPADWFNWYFNS
                     TYTALKELQELAALNADLINHTGNTNNPHSVTKAQLGLSDVENFGIASLDEAKAGIAS
                     NKLMTPASVLAAIKEQFNTQNVLFEGEAWPSGSTYKFVNGQKVSDQNLGLIFIWSDYD
                     VLPGSASVANNYNFDFSFIPKIFVNKHAGANVNVPVATNFNASVTSITIKTLYITDTT
                     FAGHDLNSSGLNANDAILRYIIGV"
     gene            22850..23191
                     /locus_tag="U0342_000795"
     CDS             22850..23191
                     /locus_tag="U0342_000795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422153.1"
                     /translation="MEIYITTNNEGFLTGYSTSECTPGKKIDIDENDAFFQRGFASYK
                     YIANQLIFDENKEKEFQYEKTLQDAIPSAADQLLTTQEALVELYEQNTKLGQQLIDTQ
                     LAMVDMYEANL"
     gene            23379..23825
                     /locus_tag="U0342_000796"
     CDS             23379..23825
                     /locus_tag="U0342_000796"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422154.1"
                     /translation="MKTRWKKYINQMLDTNYKEVFALFFLLSVSSYNILTGFFLMTSG
                     DKIVEKSRTYQLMDNLMTIDTWGLLFILSAALILIASFQESNARFINLIFGGTIGAIV
                     LFLYSAASSESAVTNLLPSRYALSACFNLFVAVMGGLELWKTKRKK"
     gene            23801..24247
                     /locus_tag="U0342_000797"
     CDS             23801..24247
                     /locus_tag="U0342_000797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422155.1"
                     /translation="MENEKEKIDYVSRAELFEHGIDIKKEMSRKVDKVESKVDKISEE
                     VVELKVLVIPMVTSSKETAQNTQKMADTLERYTRSTTKQLHEHDLEIADVKHSIDNTL
                     KSISDEESEEKHKKFSNVQIITSVLALIGIILGGILSWDWGQFIFK"
     gene            24267..24482
                     /locus_tag="U0342_000798"
     CDS             24267..24482
                     /locus_tag="U0342_000798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysM peptidoglycan-binding domain-containing
                     protein"
                     /protein_id="HEM2422156.1"
                     /translation="MSEQKAKKIKSTSVLHEETTNNEVQTAKTYVVKQDEKLSVIATK
                     LGLSVGELAEKNKLDSYKLKVGQELVL"
     gene            24493..24747
                     /locus_tag="U0342_000799"
     CDS             24493..24747
                     /locus_tag="U0342_000799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601425.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM2422157.1"
                     /translation="MKINWIVRFKNPVWVIALVGGLFLIAQSVLYVFGIEWDYNELLN
                     RLITVITSIFALIGIIQDPTTAKIKDSERAQKYNEPGKDE"
     gene            24750..25583
                     /locus_tag="U0342_000800"
     CDS             24750..25583
                     /locus_tag="U0342_000800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase"
                     /protein_id="HEM2422158.1"
                     /translation="MAKVAIFGGHNGTSESGASGNGLTEKAVAKEAAQIATAYAKACG
                     HSVVNGFGKPLSERIKYANSENVVAVLELHTNAGGGQGAETLYCEGVASAKEDAITVA
                     KAGSIKGLKNRGAKGDTTTRHGRLGIVRDTKAPALLHELFFIDSASDVAIWKNNKKAI
                     IESITKEWLKRRGLNSVPKTTTSKPAPAKPTTPSKPATSNNTYKNKKLVSKAANLRFY
                     SKPSWADKDVAGTVNKGIGFPTIVEKIKVGTAYQYKVKNSKGATFYITASDKYVELKN
                     K"
     gene            complement(25645..25866)
                     /locus_tag="U0342_000801"
     CDS             complement(25645..25866)
                     /locus_tag="U0342_000801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2422159.1"
                     /translation="MAGFIKKYLESKDWTIYQLGNATGLAHQTIRSADSKTVDQISAK
                     NVRLIAEVFKCTPGELLDEFYKIEEEIMR"
BASE COUNT         9154 a         4111 c         5734 g         6913 t
ORIGIN      
        1 tcaacgatta aaagataaag cggacacagc taaaatgaaa tatcatcgaa atttaattga
       61 tagagaaaca gctaagaaac aaataattcc atacgctgaa gcttttaatt ctagatcgaa
      121 agagattgct aaaaagtata atcaaaagcc taaattactt tcagtagcag cgtttttaag
      181 ataaaaaaga agaggtgcgt taacacccct tccccatacc gccatcactg gcgtgagata
      241 gcaaacagac ctcgcgaggt tttagacatt gctatctctt tttctattct aatagaaagc
      301 tggtgaaaag gcaatgaaaa aggagaacga gcgttcgatt gatgaaaact taaatgatga
      361 tttattagat ttagagataa gtaaagctct tgaagaagct aagacagatg aagaatacaa
      421 gaaaattatt cgcgctacac tagggaaatg gcttaataat ttgcaggaag gcaatatacg
      481 tcttgaatct gtaaatgacc ttaaaacact aattgaagca gatagattac taagaagaga
      541 ttaattttta ttgaaagatt ggagaataaa catgaccctt atattttgga ctaaaaatgg
      601 acaagagatg gaatttgatc tagttgaaaa tgtagagatt gacgagaaaa ttattacatt
      661 cgattactat ggagaaggtg aaaaaagagg cgtagcgttt atattaaata atcttgctgg
      721 catggctgta gaggatgaga attcggagag tgaaagtaaa gatggcgcat cttggtttaa
      781 agtgtacagg ggttatgtaa agtaaaaaca aactcaacac aagacaggtg gtgacagtga
      841 tatggcaagg aaacgcgacc cacgaagaat tgaagcgaaa aatatgtggc ttgaatccgg
      901 cggaaaaatg aaactggttg atattgcaaa taaactaggc tgctcttcta atcagatacg
      961 gaagtggaaa tcaacagaaa aatggtccat cgatgacgaa atagagagcg ttcctaaatc
     1021 gaatagtaac gttactaatg aaaaggaacg ttaccataag ttaaaaggga acagcaacgc
     1081 aatcggtaat cgcggaggtg caccaccagg gaatggtaat gcggttggta acgttggcgg
     1141 tagcgcacca attggcaata agaacgctgt taccacaggg gagtttgaaa cgttgtcctg
     1201 ggagttttta acagaaagag agcagcagtt gtatgagagc atggacggca atttagtaac
     1261 tcacattaac caaactatcc gtgagttaga aattagaaaa cggcgtatga tggaacgcat
     1321 cgcaaacata gaaaaatcaa tgtccgatat tgaaagaagc acgcttaaac agcttaggga
     1381 aaaggaatac atcggtgaga agaatggaaa aaaagttatt cttcacaggc aagagctagt
     1441 aactgttgag gagcgcgaaa gagtgactgc taaaattgat cgcattttaa gtattgagaa
     1501 ctcgttgaat aacgtcacta gtcagctaat tagggcgata aaacagcaaa gtgacctaga
     1561 acaagcggag gtaaaaaagg ggctaatacg ctctcaaact agtttaaata aggaacgaat
     1621 tatcaagccg gaagcagcta gcacttcccc tgatttctcg caaatgtcca ctgaggagtt
     1681 gaaggagtat gctgctagcc tcaaacaata aagaaataga cagagaatac ctttatgatg
     1741 aagctgtaag ggagattgct agaagggaat ttgcagagtt ttttttcctg tcgcacggga
     1801 aaagatataa cttattgaga caccagaagc tgattgctga caaacttcaa aaaataattg
     1861 atggggaaca aaaacattat attattgaaa ttcctcccca gcatggtaag tcaacagtaa
     1921 taactgaaac ttttcccgcc tattttctaa tgagaaaccc ggacaagctt gcaatggtag
     1981 tttcttattc agaggaactt tttaagaaat tcgggcgtaa aaacagagag aaattcagga
     2041 tgtacgcaaa tgatttattt ggtctaaata tcagttctat gtcatctagt gtgagtaatt
     2101 ggggcataga ggaccattta ggagaactat acagtacatc tattctaggt ggagcaactg
     2161 ggcgagggag cgacttacta atagttgatg atcctgtaaa aaatagggca gatgccgaca
     2221 gtaagaccat gagagacaaa gtatattcgg aatggcagga tactttttat tctaggttat
     2281 cagctagcgg tagtgtaata atcattatga ctcgttggca tgaagatgac ttagcaggta
     2341 ggttactgaa agaaatgtcc ttgccttggg aagagattaa aatccctgct atcgctgaag
     2401 agaatgattt gctaggtaga aaaattggtg aagcattggc gccagaaatc ggtaaagatg
     2461 aaaaatgggc agcacagaca aaagaagtta ctggatcacg cggttggact gccctatacc
     2521 aacaaagacc aagcccagca gacgggaaca tatttaaacg acattggatt aagtattatg
     2581 ttccggatgc agaattcaaa aagaaatacg gactaggaga cgaggtaaaa atattacctc
     2641 gtcttttcga taaatccgca caatcttggg atttaacatt taaggataca aaaaacagcg
     2701 attttgtggc gggccatgtg tggaaacgaa aacaaggaga attctttttt atcgatagag
     2761 aacacgacag aatggacttg cctgcaagta tcaatgcaat taacagaatg acgactaagc
     2821 atccagatgt tattgcgaaa tatatcgaag acaaagccaa cggaccagct gtaatgcaag
     2881 tattaaaagg tagattaaca ggtatgattc cggttgatcc tgaaggtgga aaagaggcta
     2941 gggcaaacgc tgtttctcca ttgtttgaag cagggaatgt atatttcccc catcctctat
     3001 acaaaccttg gtcggaagat gttgtagaag aattagttgc gtttcccaat actagccacg
     3061 atgatgatgt ggatgcactc acgcaggctt tggttaaatt gatgataggt caacaatcgt
     3121 tgctagatag atataaaaac ttaatgtaaa ggtggtgagc ggatgtattc aattgataaa
     3181 gcaaaacaag caaagataga ttcaaagata gttaatagga atgatttcat ggttggccac
     3241 gggaaagcaa actcgcgtga caaattaacg aggcaagttc caggcaatgg gcagaaatta
     3301 gatataaaag catgtgaaaa tttatatgct tctaacagta ttgctatgaa tattatagat
     3361 attatctcgg aagatatggt ccgtgcaggt tggtctttaa aaactgataa caaggaaata
     3421 aaaaagaaca tcgaatcgaa atggcgtaag ttaaaaacaa aggatcgatt tcagaagctt
     3481 tatgcagata aacgacttta cggcgatggc tttctaagca ttggcgtagt atcaagtaat
     3541 cgggaacagg cggatttgag cactgctatc gatccaaaaa caattaaaag tattccatat
     3601 attaatactt ttaatacaca gaaagtaact caactctatt tgaatcaaga tatgtttagt
     3661 gagcactttg gtgaagttga gttttttgaa gttaatcgcg tgtcccaact aggagaagaa
     3721 atattatccg gaacaacagc gtctacttca gaacaaattc accgttcgag gataatacac
     3781 gagcaaggat tgcgttttga gggcgaaaca aaaggaaggt ccatatttga atcgctttat
     3841 gatattatta ccgtgatgga tacgtcgctt tggtctgtag gtcaaatttt gtatgacttt
     3901 gcttttaaag tgtataaaac tgacgatata gacactttaa ataaggacga taaggcgaat
     3961 ttaacagcaa tgctggattt tatgtttcgt actgaggcac tcgcaattat caaaggagat
     4021 gaacagctga ctaaagaatc gacaaatgta tcaggaatga aggatttgct cgattatgga
     4081 tgggattatt tggcaggtgc tgttcgaatg cctaaaacag ttctaaaagg tcaagaagct
     4141 ggtactctta caggtgcgca atatgatgtt atgaactact atgcgcgagt ttcgtccatt
     4201 caggaaaaca gacttcgacc gcaattggaa tatttaacaa gattgctgat gtgggcaagt
     4261 gaagattgtg gtccgagtat tgatccagat tcttttgaat gggctattga atttaacccg
     4321 ctttggaact tagacagtaa gacagatgcc gaagttagga aactaactgc agaagcagat
     4381 cagatttata ttgtaaatgg tgtattagac cctgacgaag tgaaagaaac acgctttggt
     4441 cgtttcggat tagagaattc ttctaaattc agtggtgata gcgcagaaat tgataaatta
     4501 gctaagcttg tctatgacgc gtatgcgaag aagagcgcag atggttaaaa gacgcgttcc
     4561 tgcgactcgc tatccacata atttagaaaa gagttatact aaacagctag taaagcttag
     4621 cacggcttta tctgacatgt ttttacatga atttgacacc agtattagtg ccattctaaa
     4681 aacgtctcaa aatcgctctg atgcgttcag agaagatggt ataagtgatg ccgttcaagc
     4741 tgttttaaat aaagtaaagg cgctaagttt tggattattc aacccgcgag acaagtattc
     4801 tattgcaagt aaacatgtta aagcaataaa tacgactaat aaatcacaaa taggcaatca
     4861 agtgcgctca caaggaattg agcccacaca gtctgaacca tggttaagtg agttcatgga
     4921 cgcttcgatt gccgaaaatg taagttatat tggttcaatt gcagacgaat ttaacgccaa
     4981 aacagaacaa ataattttgc gtggtgtaaa aaatggccaa tcattaaaag atatgcgtga
     5041 tgaactggtt acgcaagtag gtacatcaaa aaataaagct gaatttatcg ctaatgacca
     5101 gaccggaaca atctttgggc agatgacagc cgagaggcat aagaaagcag gcatacccgg
     5161 ctttacttgg agagattcag gagatgcagc ggttagacca tcacaccacg caagaaatgg
     5221 taaagtttat tcatatgatg atccaactgc acagattcct ggaactgatt atagatgtcg
     5281 ttgcacagct ggtcctgaat ttgatgagtc tgtagttaaa gctgctacaa atgagcgtaa
     5341 acaacaagag ctagaagata aagcaacatt aaaaaacgct tatagtgaag tagctcaagc
     5401 tgctcaaaaa gctccggata atgttaagga cttaataagt agtaacatta ctgcaaattc
     5461 ttttgagata gtgcgagata ataatattgc atatgcttat cgtccttcaa ctaagaagat
     5521 aattattaat ccaagcaaca aagctataaa atattataat aagcaagaaa tattacttca
     5581 tgaatctggt catttgatag attatgcgaa atataaatct tgggaaaata agagttttac
     5641 tatttctact cagatagaga agaaagttgc aaagtgggat gaaataaatg aattgttcag
     5701 tcatgaaaaa tgggcaaacg atgattactt tagcgatatt tgttcggcac ttacggaaaa
     5761 tagagtaaaa ggtaatgcag gacatgccgc ttcttactgg aatcgaaaag ggagcattga
     5821 aaaagagatt tttgcaaatt tatttgctat gctagcaatg aacaaacaag aatcaattgc
     5881 tatggtaaaa aaacaatttc cgatgattta tggatcgttt attaaaatgt tagaaggtga
     5941 attgaagtga ttaactacaa aaaatggctt gatagcatga tgtctactga agatggaaaa
     6001 atactttttg aacgttataa aaaactttat ggccattatc cgccgttctt acttgacgct
     6061 acagaaaaag aacagtggga tgaaattaaa cgattgataa aagacgctga taaatgattc
     6121 agtgtctttt ttatgccaaa aattgaaagg tggtgagaat atgaaatgaa ggtgcaacga
     6181 tttgataaat catttattac agattcaaat atgcaagtta ctaaagaagg ttacttaact
     6241 gttaaggcgc cagtcacgcg gccaggggta tttccttatc aacgagcgga cggcagtatt
     6301 cagcttgaag ccaaattacc cgaaaacctt tttgctagcg aaactattca atcgctcaat
     6361 gcaaagccag ttactaatga ccatccgaac gaaccagtta atgcaagcaa tcatcaaaag
     6421 tatgcaaaag gaacaacgca tacagacgcg tgcgtaagtg ataataagct atttgtatct
     6481 ttcactatta cagactctaa gacaatacaa gctgttcaag acggtaaacg cgaactgtcc
     6541 cttggctttg aatcggaagt agtaaaagaa agtggtactt atgcaggcga aaggtacgat
     6601 gccgtgcaaa aatctgtatt agtcaatcat ttagcaattg tagatgaagg acgcgtgggt
     6661 cctgaaattg caatacgagg cgactcagct gcttttatga ttgattcaaa aaacacgaaa
     6721 aaacaaggag gaaacaaaat gccagtacta aagattgata gcaaagaata tgaagtcgat
     6781 tcagttgtta agtcacgatt tgacgcatta gaagcaaaac tggatgcagc aaatgctaaa
     6841 gcagctaaag ttgatgcatt agagggagaa cgtgacggat taaaaacaaa gttagataaa
     6901 gcggaaagtg atctggaaga agctaacaaa aatacaatga cggaagaaga tattgaaaat
     6961 gcggtcacag aacgagctgc attattagat tctgctaaag tgatgcttgg tgattcattt
     7021 gatttcaaag ggaaaactgc tcgtgaaatt aaagaagccg ctattaaaac atcgaatgat
     7081 tcatttgatt ctaaagacaa atcagatgaa tatgttaatg ctttttatga tgcgatgaca
     7141 gttacagcag atgctaaagg atatactgca gatgctaact ttaataaagg caaacctgat
     7201 ccaaaagagt tagaagaaat tgaaaagaaa aaagcggcgc gacaaaattt tggtaagaaa
     7261 ggagataaca aataatgagt attccaaccg gacaagagta tatgatgcct gagctaggtt
     7321 taggtaaaat tgcttcttat caacgttcgc aagttgatag cgcagcagta aaagcaaata
     7381 ttaaattcgg ccaagccgtt caagttctcg atgatgaggc tagcccgttg gaggctacag
     7441 gtgattttta tggagtcgct gtggcaaaga actacgtaga tgagtataca gatgataaag
     7501 taggtgttta taaaccttct gaagcggtgc cggtgttacg acaagggaca attacagtta
     7561 ttgtggatga ggatgtgaaa tctggagaaa aagcagttgt taatacagat acctctaatt
     7621 tcttaccttc tacaacagca aaaacaacta aaacaggtgt aattggtgta tttaaatcaa
     7681 caacatctaa agatggatta gcaaaattag aaattaatct gccttaaagg caaaaggagg
     7741 aagaacaatg ccaggaaaaa ttacagcaac aattgaagca cgtgacttac aagctattga
     7801 caatgttatt tatgaaccga aacaagaaga attaaccgca cggagcgtat tcccgcaaaa
     7861 attcgatgtg aacgaaggcg cagaatcgta ttcatttgat gttatgacac gttccggagc
     7921 tgctaaaata attgcgaacg gagcagatga ccttccactt gttgatgtgg acatggtacg
     7981 taagtccgta cctatctatt ctatcggtat tggattgtcc tatacagtac aagatttgcg
     8041 tgctgctcgt atgcaaggaa ctacagtaga tgctgcaaaa gcggcaacag ttcgtagagc
     8101 aattgcagaa aaagaaaact ctattgcttt tagaggagaa aagaaatatg caatcaaagg
     8161 ggcatttgaa gctacaggca ttcagattga tgtatctccg acaaccggag taggaaatgt
     8221 ttccaaatgg gaaaagaaaa ccgcagaaca gattattgat gaaattggag cggctcatac
     8281 taaaattact gttttgccgg gatatggtac agcttcacta aaactatgct taccaccgaa
     8341 gcaattcgaa ttaattaata aaaaacgtta cagtaacgaa gattctcgct ctgtactgaa
     8401 agttctacag gataacgctt ggttttctgc tattgttcgt gtgcctgatt tagctggtat
     8461 gggtacttcg agttctgaca gttttgcggt aattcatgac tcaaacgaaa cagcggagtt
     8521 aattattccg atggatatta ctcgtcatcc agaagaatat tctttcccgc gcacgaaagt
     8581 tccgtttgaa gagcgcacag ctggcgtagt ggttcgattc ccagccgcta ttgttcgtgt
     8641 cgatggtatt taagaattac taggaggaat aaacaatgat tattgaaaac aaaggtgact
     8701 acgtacgttt tttaggaaaa gttagattag ttccaggaac aaacaatatt gataatgaac
     8761 atgctgaaga attagaacaa gcgcttaaac atccgcttaa tatacacttg attgagtcgg
     8821 atgaattaaa agtacccgac aatttacaac aagattctag ccttaatgat ttcaatgcta
     8881 cgaaagcggc attgctagtc aaggatactt ttgatttagg agccttaaac gaatttttag
     8941 cagaagagac tacaaacgga aatcggaaaa ctgtaatcga tgctattaat aagcaaattg
     9001 aatcaattag caatccgcca caagaagaac gatatgttcc tgaagaggat tttggtaaat
     9061 gaggaggtaa ctcatgaaaa cagacgttag taagctcaaa ttaacggcat cagcattagc
     9121 aagcgtctcc gatgattctc tacaagtaca cattgatgat tcatatttag aagtacaaga
     9181 aaaaggattt cctgaaaaat tcgaagaaag agcaaataga taccttgctg cacatcttgc
     9241 aacattagca aataaaaatg ttaagtcgga agcagtaggt tctctaaaac gggaatatta
     9301 cgaagttaaa ggagattctg ggctgttatc tacagagtat ggtcaagaat atgcaagatt
     9361 gcttaaggaa gcgaacggtg gatcaggaat tagcatggtg gtggtttgat gaaggtaact
     9421 actgataaat ctacaatgaa caaagcaatt agggagctgg atcagctaga ccgttatagc
     9481 ttgcaaatcg ggctttttgg tgaagatgat tcttttattc aaatgattgc tggtgttcac
     9541 gaattcggtt taaccatacg cccgaaaggc aagtatctaa ccataccaac accagaagct
     9601 ggtgatagga gagcgcgaga tattcctggt ctatttaaac cacgaggtaa aaatattctt
     9661 gctgtagcag gtcctgatgg taaattgacg gtcatgttct atttaaagaa agaagttaat
     9721 attccggaac gttctttttt gaggtccaca tttgatgaaa aaagcaacaa atggggagag
     9781 ttgtttgagg gatggattga tgatattatt cacgggaaat taagcgccga gcaggtatat
     9841 aaccgattag gcgccaaaat tgtggacgat atacaaatga aaattgttga gattcaaact
     9901 ccggccaaat cagcagcgac cttggccaga aaccccagaa aaaacaatcc tttaattgtc
     9961 accggtaaaa tgaaaaatag tgttacttgg aaggtgatga agtcataatg gaaaaaatgg
    10021 ttttccaatc attactggac agctttggtg ttccgttgac agttcttaaa aagcaagaaa
    10081 aaggtggaga attcgttaac ggcgagtggg tagtaagtca gcttgacgaa acttctaaaa
    10141 ttgaagttaa tgaacccttc gttccaagtt cgctcatgac tcaaatgccc caaacatctg
    10201 catacatggc tgctaggtat gaaaagtacg agatgatttg gttttctagt caagttctgc
    10261 cgttaaaaag caaagtgatc cataaaggaa tatcgtattc tgttgaggat gcaattcctt
    10321 tcacagatta ctcagacgtt actcagtatg gatgcaaggc ggtgagcgtt agtgccaaat
    10381 gatggttatg attatggaat acttgttaaa accttgattg gtgctgttaa tgagctttct
    10441 ggtggtttac aacttattga aagtgctagt ggtggagagc aaccagaata tccgttttgc
    10501 caatacacca taacatctcc ttacattgct atcagtcctg atatagtgga aggggagcaa
    10561 tttgagattg taatctcgct tacatggcga gctttatctg gccatcaagc cttaaatttg
    10621 gccaacatta caaataagta tttccgctcc caaaaagggc gtttttttat gcaagaaaat
    10681 gggggtattg ttgttgtcag tgttcaaaac agcgggctac gtgatacttt cattagcatt
    10741 gaatatgagc gctcagcagg cattgatttg cgattgcgtg tagtggattc gtattcaagt
    10801 gagatacaag aaattgataa tatcagtttt acaaatgaga atctaggagg ataaaaaaat
    10861 ggtagaaact attacagatg taagagtaca catttctgta ttgtatccgt cacctcgcat
    10921 tggacttggt cgtcctgcga tttttgtcaa agggacagcg atgggttaca aggaatacac
    10981 tactctcgaa gaattgaaag atacgtttgc agatactaca gaagtctatg cgaaagcaaa
    11041 agcagtgttt cttcaaaaag atagacccga cacggtggca gtcatcactt acgaggatac
    11101 gaaattatta gaagctgcag aagcttattt cttgaaatct tggcattttg ctttgcttgc
    11161 agagtttaaa gctgcggatg ctcttgcatt atcaaacttg atcgaagaac agaaatttaa
    11221 atttgcggtg ttccaagtta cagctgtcgc tgatattaca ccacttgcaa aaaacacacg
    11281 tactatagca attgttcaca gcaaaactgg agaaaaacta gatgcagcgc taattgggaa
    11341 tgtagcaagt ttgccggttg gttccgcaac atggaaaggc cgtcatggac ttacaggaat
    11401 cacatcagaa gagctaaaag tatctgaaat tgatgcaatt caaaaagtgg gaggcatgtg
    11461 ctatatcgaa aaagcaggca ttgcgcaaac ttcggaagga aaaaccgttt caggcgaatt
    11521 catcgactcc attcatggtg atgattggat caaagcaaca attgaaactc gtcttcagaa
    11581 gttgcttaca gaaacagaca aacttacttt tgatgcacga ggtattgcgc tacttcaaag
    11641 tgagttgact actgtcttaa atgaaggttt tgcgaacgga atcattgata gtaatgacga
    11701 gacgggggag cccaattttt ctattactgc gcttcaacgt tcagatttaa atgatgacga
    11761 tattgctaaa cgaaactata aagggctatc attccgctac aaacgttccg gagctattca
    11821 ttccgtggat gtatacggcg aagtggaagt ataaaaggag gaataagata atgagtgaag
    11881 taatggcgac atatgatgca aatacagtat cgacaattat caacggaatt tctatttttg
    11941 gtttttctga tggggatatg gtttcatgct ctaaagattc aaacaatgta gaaattaaat
    12001 cagacgcaca aggtaattcg tcagcagctg ttaataatga caaaatgggt acgatcaaag
    12061 ttgatttagc tcagacatca ccttgttatc caaagctgat tgatatagca aatagacagc
    12121 taaaagttcc tatttacgtt attaatggaa aagaaaaaat tggtgggtct atggctttta
    12181 ttgaaaaatt accagacgca ggttttggta aaagtgttgg gacaaggtca tttactttca
    12241 aagtactaga ttatacacat actgcataaa atatattata ctaagcgacc tttttggtcg
    12301 cttttttagg aggaaacaac aatggcagag aagaaaaata atgcaactaa aagtgatgta
    12361 gcagcagctc aagcagcaca aaagattccg aaagcagaaa aaaaaccttt agataaattt
    12421 ggaaaaaaag aagtgttcaa agctagcgac aaggttgaat acacattcca gttccctgga
    12481 actcgcgctg cacaagcaat cttagacgag tctaagaatg gctatggcgt aatcgtggat
    12541 tctgtatatt atgagcgaat tatgaaagat gtaattgttg agcctttggg tttggactta
    12601 gattattggg atgaacatga aggttatcgc gaggttatga atgcagctga caactttctt
    12661 ggtggattgc ttaactaagt ttcctaccgc tcgacaagct gaacgggaag tcaataaaga
    12721 gtttgatatt tggcttccta taatcgccgg tatagcaacg aaagaagaag ttgaggttgc
    12781 tacatcatat gaattagcaa tcttatgtga ggttgcaaga caaaaaatag aactaatgaa
    12841 gggtggtgtc tgatatgtca ggcgcattga gaaaaacaac aatcgaaatt gattggaaaa
    12901 tcaataatca aatgttgcag aaagctgatg aagaaactga tcgcatcgtt cgctctgcgg
    12961 acaagatgga acggaacttc aatcaatctg ctaggtctgt tgatggcacc acccgtgcta
    13021 tacataaaca gtcaaatgaa gtgagagaga gtgcgactcg agtagataag cttgataaga
    13081 attttaaaga agcaaagaac tcggctaatc aatttgggaa ttctgctaag ggcgcagttg
    13141 ataaaactaa aaactcggta gactcagcaa agaatagcgt taataagtta gataatgaaa
    13201 ttgataaaac tactaaaaat gctaattcta aattcagcgc actaaagacg actattattg
    13261 cagtaggtag cgctttgttg gttgctggtg ggaaagcaat gtttaattat gcatcagata
    13321 caaatgagtc gttaaataaa gtggacgttg catttaaagg aaatgctaaa aatgtcaaac
    13381 gttggtctaa aacaactctg gataatatcg gtcttgcgca agggactgca ctagatttgg
    13441 ctgcaactta cggtgatatg tcaacatcaa tgggattgaa tacacaagaa gctgagaaga
    13501 tgtctacttc tatggtcgac ttagccggga acttagcatc atttaagaat attgatattg
    13561 atagagcgaa tacagcccta aacggcgtat tcacaggtga aactgaagca ctaaaaagtt
    13621 taggtattgt aatgacccag actaacttag aacaatttgc tttagaaaca ggtgcaggaa
    13681 aagtagctaa aagtagcacg gaagttacaa agcaaaatat tgcacgtgaa aaagcacaaa
    13741 aaaaattaaa cgaagcgata aaagaacatg gtaaaaattc attagaagca agggaagcac
    13801 aaaataaatt acaggaaatt caggctaaaa caagcgaaag cgcaaaagtt aatttgaaag
    13861 acatgaaaca agatgagcta gtacgtctac gttataacta tgttatgaaa cagactacaa
    13921 acgcgcacgg agattttaaa aacactagtg atcaagccgc aaacgcaagc cgcgtatttt
    13981 ctgaatcagt aaaagagcta gcatcaaacg ctggccagtt cttgctgcca gttattacac
    14041 cattgattat aaaagctagt gatttcacga aaaaactttc ggatatccca agtgctgtga
    14101 aagggatgaa agagaaattt aagccagcgt tcgaagtgtt tgaatccgtc ggcgactttt
    14161 tcaaaaaaga ccttattcca agtgcgaaag agctggcaaa aagtatggga cccgggttca
    14221 tcgaaggcgg tgttttagca tttaaagggc tagggatagt attaaacact actgttattc
    14281 ccgcttttaa agcagttact aaatttacgc gtgaaaatcc ggatagcatg aaaagaattg
    14341 ctaagtatgc gactgttggt gtggcaggtt ttttaggatt taagttagta aaaaacacta
    14401 ttgataaagt aacagttgct attggaaaaa tgaacagcaa actattgagc atcggaccaa
    14461 gtgcagcagc tggtgcgaca gaagcgaacg ttgcaatgtc aactataggg acaacaacga
    14521 atggcgcggg cggagttgta ttacctggcg gaaaaggaaa agggaaaatt aaacttttca
    14581 gtaaagctac agcagggctc aaaagcatgg ggaaattcgg caagttagca tcaggagttg
    14641 gtgtattagg ggtcggatta agtgctactg aacttattgg aatgaacaaa gataatgcag
    14701 gtgaaaaaac tggcggtttt ggaggctcgt tagggggcat ggctgggggc gctgcaattg
    14761 gcacagctat agccccaggt attggtactg caattggagg ggcaattggc gcttttgccg
    14821 gaactgcatt aggtaaagaa ttagggaaat atgttcaaaa agaaggacca aaaatattag
    14881 ataaattcaa gacaggctgg aaaggcttaa gcaaaattgc tgaagagcat ccgattcttg
    14941 gggctaatat aaatgtaata aataaaacta tcgatgcagc aaaaaaaggc attaaagcag
    15001 taggagacac acataaagct gtttggaata tctcgaaagc gatggttgca gaccctctca
    15061 aaatcgatgc gggtggaaaa ggcgtttcta aagactctgc caaagcaatg aataaatatt
    15121 taagcgctga gcaaaaactt caaaatgata gtacatctag aatagtagac ggaaaatcta
    15181 taagtggaaa tgaatataaa gaaaatatga aaacacatga caatatgtct attcagcttg
    15241 ttaatgcaac tgataaaaaa tcggttaagg cgaataatga ttgggataga ttagtcgcgt
    15301 cgggagctgt ttccaaagat gtggctagcg cgaagaagca cactaataat gaaacggcat
    15361 caataaataa agctgatatt aagaaaaaca cagaggaatt aaagagatta gaaaaaagta
    15421 gatttgaaga gcagagaaaa atagaagaga atgctgctgg agcaatctta aaaatcaaag
    15481 aaaatgcaaa gaaaaaagga gttaaacttt caaaagaaga aaaagttgaa atagaacaaa
    15541 ttaacaaaga taaagtaacg gcaattcaag taagcgagtc tacttactct aaaaaaagtg
    15601 ctgagattca aaagaaacaa agaaaagaag ctacaatagc gctttctaaa tcagcaaaag
    15661 aacaaaagat aatactaggg aatttagaaa actctaaaag cgaaatgtct gcaaaagctg
    15721 ctgcttctgt tgtgaaaaat tctgcaaaac aacgcaatgc tactgtaaaa gaagccaata
    15781 aagaatttaa agatacgaaa agaattttag atgaaaaaag atttgttacg ggggaaatag
    15841 gcgagaaaga atatcgtgag gcaataaaac aagctaagaa gaaaaaagat ggcacaattg
    15901 atgaagcaga aaaaatgcac aaagaagtag ttaatcaagc tcagaaacaa gcgaaaggac
    15961 atttgaaaga agtcgactgg gaaacagggg aaactctaag taaatgggat caatttaaaa
    16021 aagcgacatc agaaacgttt aacagtataa aagatgcagc acttggaaaa tggaatgagt
    16081 tgtcatctgc gacagttaat attttcggtg gaatgaaaga tgcatcttta cgcgtgtggg
    16141 atagttttaa gactaatttg tacaaaatgg ttaacaatgt gattacagct gtcaataaag
    16201 tactgtcgtt ctttagcatt ggttcaatac ccttgttagg aaacggaaat attggagcta
    16261 gtcaagaaaa caagttgtcg gcaaaagata aaaaaacata tcattctact tcgcaatcag
    16321 gaaatttggc tatgaattat acgggttctg atagtgcagc tggtcagatc atggctggtg
    16381 aggaaggttt tgagatagct tataacaaga actcagcaca agcaagaatc cttggtaaga
    16441 atggaccgga aatcactaca gtagcccctg gaacaaaaat cctcaatcat gctgagtcta
    16501 aaaaaatgat gtccggcgga atgggcgcag gaacggtttt acctggcttt gcgaaaggga
    16561 caaatggagc agtagagtca ctgaaaagcc ttggttcaaa tgcaatagat agtgtcaaaa
    16621 acgcaggtaa taaagttaag gatattgcat cttctgcttg ggatttcgca actgatcctg
    16681 tcgctggagt taacaagttg atggcgaaat ataataagtt gcctaataat tcacctatgg
    16741 cgaacatggc cggcggaatg ttcaaatatt ttggtaaggg cgcaggcgat tggttgaaag
    16801 aaaaacttgc tgatgtcttt atgacatctg atgggggcgg agaagggggc gggatgtttt
    16861 ctcctcactt tggttcacca tttagaatga cgtccggcta tggaccgcga acagtgtttg
    16921 gaaaacaaga atttcataaa gggatagatt acggagctcc aacgggtaca cctcttcctg
    16981 ctcaatatgg cgggaaagta agtcgcgcgg gcacagctgg cggttttggt aatttagtat
    17041 ctattacggc tgggaaaggt atagaaaact tatatggtca tctctctaaa atcttaactt
    17101 ctgctggttc tgttgtcaaa gcaggtcaaa tcatcggttt agtaggtagc acagggcgct
    17161 ctactggtcc acatgtacac tatcaagtaa accaaaacgg taaacctgta aatcctagta
    17221 gtagtcttgg gggtggctca tttaatggaa aaggtggctc taaagcagtt aacggatggg
    17281 ttcaacaagc aattggtctt acaggcgttc ctgctagctg gtcaaacgca ttggccacaa
    17341 ttgcaatgaa agaatctaac ggaaacccga acgcggttaa taactgggat attaacgcca
    17401 agcgcggcat ggcctcacaa ggtcttatgc agacgattcc agcgacattc aacgcgtata
    17461 aaatgaaagg tcatggtaat atcttaaatc ctgtagacaa catcatcgct gcaataggat
    17521 atattaaggc tcgatatgga actgtattca atgtacctgg tattaaggct ttggcttcag
    17581 gcaaggctta caaaggatat aagcgtggcg gacggccacc ggttaatgaa actgttttgg
    17641 ttggtgaaga aggacctgag ctatttgaaa ctgatacggc cggaacagtc catacagctc
    17701 aaaaaacgaa gcagatgtta aacaaaagtt cgagtggaac aactataaac ttcaatccaa
    17761 ctatcaatat aactgttgaa ggtggatcaa gcgaaagcga gtcgtctatt cgtaaaactg
    17821 ttcgagcgga aatggaaaaa ttattcgaaa aacttgttgg aatttatagt cctggggagg
    17881 tgtgatattt atggtagcaa caataggttc tgtgaaatta gtaaatacaa acgaaagtga
    17941 gtcttctccg tttactatta cagataatcc tgtagaaacg ggttcgcctg tctctgatca
    18001 cgttcaacgc gaaactaaga cactagaaat tagcggtttt ttgctaggag ctactgctga
    18061 aaaagattat gctactttaa aaagctatgc agaaaaaggc actatagtat catttagagg
    18121 tcgtgtatac tttaaaaacg tgctaatcag taatctatca aaaagttata atacaataaa
    18181 aaatggtttt gagattacgg tatcacttag ggatttaagg cgcgcatcga cgccttgggt
    18241 aagaaagaaa aagaaaagtt ctgggaaaaa gcaatctgtc aaatcaaaaa aaagtcctgg
    18301 cacttatata acagtgaaaa aaggcgactg ttactggaaa tggtggaagc gatatggtac
    18361 aagtatcgct cagctcagga agtggaataa gtggccagac aggcgtattc ctattggtaa
    18421 gagagcgagg gttaaatagt ggctattaga aattatatac cagtggaact tgataatatt
    18481 ccggaacttt tcgaatttga tttcgatgat ggcaaaagtt ttttattcgg gattaattat
    18541 gcagaatcac aagatttgtt ttctgtcgat ttatatagta ttgaagggga accaatcgct
    18601 ctgggagagc gactagtatt aaacgaacgg ctttgggcag atattataga cgatagactc
    18661 ccttctgttg acctagtacc tttagacgaa tctgggaaag aaactaaaat aacgaaggac
    18721 aacttcacga aaaccgtgtt tttgtatttt gacgatcttg cgccagaaat ggaattgcca
    18781 acgttggata atgaggtgag tatgatatga ctcaaatgct gtggatgcgc gaaatttatg
    18841 tgcatataaa caacggaagt gaatatgcta ctattcatga aaaaaatgaa gcttcaggaa
    18901 gtttaaaaat taattttagt attcctttct ccgatgaacc caaaccagcg gaatgcgaag
    18961 ttgttatata taacttatct cgcaactcat ctaataaaat aaaaaaaggt tctactattt
    19021 cggttacagc tggatatcaa ggagataaag gtttgctatc acaaggtaaa gttacgaaag
    19081 tgtctactgt gccaagcggt gtagacaaaa taactaccat taaattttcc gaaggcgtcg
    19141 attactcgga taaaaaagat gtaaatatta cgttcaaaaa aggaacgtct gcaaaatcaa
    19201 ttatccaaag aatcgctacc aaagcaggaa ttaaaattta tcaaataaaa ctaccaacga
    19261 ataagattta taaatctggg tatactgcgg acggagatgc tctttcagtg attgaagaga
    19321 tagttaagga ctgtaaagca gcaatatatt atagacgagg taatttagtc attcgatcta
    19381 taaaatccgg tgatgatgaa cgttttacac taaacagcag cactggcttg atatcatcac
    19441 cagaacgttt agagaacgat gaatactcgg gatggagctt tcagtccttg ctacagcatc
    19501 gaattgctac agcttctatc attacactaa aatctaaaac cgtaaacgga acatttcgag
    19561 tcaaaaatgg aatgcacaac tatgatggtt ctactttcac gactcagtgt gaggtggtat
    19621 agatggcaca agatacaaag ttctttgatt catttattag attagtaaat tcaagtgtat
    19681 cagtacttct tatgtgcaga gtcgttaatt atgatgcaag caataaacgt gcggatgtgc
    19741 agccattgaa tttaaagccc aacggagcaa aacgagcgat gattttagat gctttagttt
    19801 taaagcacac agaggaagat atttctgaag gaaagatagt agcgatagta ttctctgatt
    19861 gcgaattaga taatattaat ggatcaactg actttaaacc agaaagctca agacaacata
    19921 gtgttaatga tgcggttgta gtgggggtat gggacgtatg aaagatttac taatagatag
    19981 caacggagat atagtggttt cagataacga catattaatg actgatggcg taaatgatat
    20041 tgttcaatgt gtcaggatga tattacagac acgtgaaggt gaattttatt ttgatgagaa
    20101 ttcaggaatg aatcacgaaa atctttttac gaagaagccc aattttgatt acatcaaaca
    20161 agatgtaatt acggctatag aagaacaaga agagcgtata tctagtgtag atagcgttct
    20221 ttttgatttt gacaaagata ctagaaaatt acatgtaagc ataaaaatga caggcttaga
    20281 tggtcctgtg agtgtggaag aggtgatatt aaatgcttga cgaacacgga tttaaacgaa
    20341 agacatacga tgaattgctt actgacatgg aatcaaaagc aaaggagctt tttggtgagg
    20401 atattaactt aagctctcat tcggcactgg gagtgttttt aagaataatc gcttggttta
    20461 tgtcccttat acatgaatta gctgagagag tgtacaacag tggatttata agctctgctg
    20521 acggtgtcca actggataga ttaggaagta acatcagcgt tttgcgtgag ccggcaatgc
    20581 cagcggtagt gacgttagaa cttactggta atgctggcta cacaatcgaa gaaggtgttc
    20641 aattcaagac aaagaacgat gtcgtttttg aaatgattga tgtagttaca ctcgatgaca
    20701 aggggcatgg aatagggcaa gctatatcac aaatctattc agacaaagca aatgttcctg
    20761 ctaattctat tacagttgta gcagaaccaa gtgaagatat tttaacagtt aataacccta
    20821 acaaggccga tggtggttca gaaaaagaaa atgatacaag ctacagggca aggataagat
    20881 tagctactag tgcaagtcct ggtccaccgg taaacggaat tatctcagct ttaaatcaag
    20941 tatcaggtgt tagaagtgta tcaataatag aaaataatag tattgatttg gacgcgtata
    21001 ataaccctgc taaatcagtt catatttact gtctcggagg aattgacgaa gaaattggtg
    21061 aagcgatttt taatagtgtc gctgctggaa tacaaacggt tggtaaagta acggttaaag
    21121 taaaagattt atccggattt gagcattcag tttattatga tcgggctact tctttatcta
    21181 tatacgctca tattatcgtc gatgtaaatt ctaaatttga agacgatggc ggcgacgtaa
    21241 taaaacaagc tgtactaaat tatataaatt cattaaacat gggggagatg gttatccatt
    21301 cttacatcta tccagattta tatcaaattc ctgggattac agttgcgaat gtaaagttag
    21361 gaaaagatat caataattta gcatctgctg acattttagt taatactgat gaagccgctt
    21421 ctattcgttg ggaagatatt gaggtgacaa taaatgtccg ttaaagattt tctagggaaa
    21481 ttaacagatg cttttacaaa gtcagaaaag agtaacatag gaaaattatt tattattgta
    21541 gatcagcaaa tttccgcatt aactacggct cttgaaaaaa cagaggcatg gcgagatatt
    21601 gataatgcgc aagggaaggt actgaataac cttggagaaa atgttggcca gaacagagga
    21661 cgagctactg atgaggtata tcgtgtttta atccgtggaa aagttgcaag aaacgcaagt
    21721 gacggaacca caaataaaat catccatgca atcgcaaaat cattagattg caattataaa
    21781 gatattcaaa taatcaatgc taacgattct aattcatcag atgaacatga gcctgctgcg
    21841 ataattatta aaaagattcc tctttctgct ctgaatgcag tcggcttaag tactaatcaa
    21901 tttttacagc tagtaaacag tctgaaatct ggtggtgtta gagtagcata catcaattta
    21961 gaaggttctt tttcttttgc aaaaggagca acggaagaga taagcgacga cggtttttcg
    22021 gaacttgatc aaattctggg aggaacttta ggcggtttat ttacaccatc agatgacttt
    22081 aagttaccaa tttaaaagaa agagaggcga taattatgtc acgatttaat gcaaatttag
    22141 ctcgttggga agcaacggga acaaagcccc cggatagtac cattcaaaat ggatggttgg
    22201 cggggactaa gccgccagcc gattggttta actggtattt taatagcaca tatacagcac
    22261 tgaaggagct acaagaactt gctgcattaa atgcagattt aataaatcat acaggaaata
    22321 caaataatcc acacagtgta acaaaagctc aacttggttt aagtgatgtg gaaaattttg
    22381 gaattgcatc tctggacgaa gctaaagcag gtattgctag taacaaacta atgactcccg
    22441 caagtgtttt agcagcaatt aaagagcagt tcaatacgca aaatgtgtta tttgaagggg
    22501 aagcatggcc ttcaggaagt acctacaagt ttgtaaacgg tcaaaaagtt tctgatcaaa
    22561 atttaggttt aattttcatc tggagtgatt atgatgttct ccctgggtca gcgagtgtcg
    22621 ctaataatta taactttgac ttttcattca ttcctaaaat ttttgttaat aagcatgcag
    22681 gagcgaacgt aaatgtgcca gttgcaacga acttcaacgc ttccgtgaca agcataacaa
    22741 taaagactct ttacattact gatacaactt ttgcaggaca tgatttaaac tcaagtggct
    22801 taaatgcaaa tgatgctatt ttacgctaca tcataggagt gtgaacgaga tggaaatata
    22861 cattactaca aataacgaag gttttttaac tggctattcg acaagcgaat gtacgccggg
    22921 caaaaaaatt gatatagacg aaaacgatgc ctttttccaa cgaggttttg ctagttataa
    22981 gtatattgcg aatcaactta tatttgacga aaataaagaa aaagagtttc agtatgaaaa
    23041 gacgttgcaa gatgcaatac caagcgcagc agatcaatta ctaactacgc aggaagcatt
    23101 agttgaatta tatgagcaaa acacaaaatt aggacagcag ttgattgaca cacaactcgc
    23161 gatggtagac atgtacgaag cgaatttata ggttatttgt tatttaagga ggtgaataga
    23221 aaatggctgt gatttatttg aatttgattc tcaacggtaa gaaaacattc aaagaagtac
    23281 cacgcttact gcaagcacaa gtaaaagcat tgttaattga cgcagattgc gctgaattag
    23341 cagagtaatt tgtcagagtg aagggggtcg atggggtaat gaaaacgaga tggaaaaagt
    23401 atataaatca aatgcttgat actaattaca aagaagtttt tgcgttattt ttcttattat
    23461 cagtttcatc ttataacatt ttgactggat tttttttaat gacatctggt gataaaattg
    23521 ttgaaaaaag caggacatac cagctaatgg acaatctgat gacaattgac acgtggggct
    23581 tgttgtttat tttaagtgct gctttgatat taattgcatc ttttcaagaa tcaaatgcga
    23641 gatttataaa tttgattttt ggcgggacaa taggtgcgat agtgttgttc ttatattcag
    23701 cagcgagctc agagagtgct gttacaaatt tattgcccag ccgctatgct ctaagcgcat
    23761 gttttaatct atttgttgcg gtaatggggg gcttggaatt atggaaaacg aaaaggaaaa
    23821 aatagattat gtgtccagag cagagttgtt tgagcatgga attgatataa aaaaagagat
    23881 gtcaagaaaa gtcgataaag ttgagagcaa agtagataaa atcagtgagg aagtagtaga
    23941 actgaaagtt ctggtgattc cgatggtcac gtcatcaaaa gagacagctc aaaacacgca
    24001 gaagatggcg gacacactcg aacgatacac gcgatcaaca acaaagcagt tgcacgaaca
    24061 tgatttggag attgcggatg tgaaacactc aatcgataat acattaaaaa gcataagcga
    24121 tgaagagtca gaagagaaac ataagaagtt tagtaacgtt caaataatta cttccgtctt
    24181 agcattaatt ggcattatcc ttggtggaat tctaagttgg gattggggac aatttatttt
    24241 caaatgatta agggaggtga gtggaaatgt cagagcaaaa agcaaaaaaa attaaatcta
    24301 catcagtgtt acatgaagaa actacaaata acgaagttca aactgcaaaa acttatgtag
    24361 tgaaacaaga tgaaaaactt tcagttattg ctacaaaatt agggttatca gttggtgaat
    24421 tagcagaaaa aaataaacta gattcttata aattaaaagt tggccaagaa ttagtattgt
    24481 aggaggaata tcatgaaaat aaattggatt gttcgtttta agaatcccgt gtgggtgatc
    24541 gctctagttg gcggtctttt tttaattgcc caatccgtac tctacgtatt tggcattgaa
    24601 tgggattaca acgaattatt gaatagactg atcactgtaa ttacttctat atttgctcta
    24661 atcggaatta ttcaagaccc gacaacagca aaaataaaag atagtgaaag agcacaaaaa
    24721 tataatgaac ctggaaagga tgaatagaaa tggcaaaagt ggcaattttt ggaggacaca
    24781 acggaacaag cgaatcagga gcgagcggga atggacttac tgaaaaagca gtagcaaaag
    24841 aagccgcgca aattgcgaca gcttacgcga aagcatgcgg gcattctgta gttaacggat
    24901 ttggtaaacc tttatcagag cggattaaat acgcaaacag tgaaaatgtt gtcgcagtat
    24961 tggaattaca cacaaatgcc ggcggcggac aaggtgcaga aacactttat tgcgaaggtg
    25021 ttgcatctgc aaaagaggac gcgattactg tggccaaagc tggatcgata aaagggctaa
    25081 aaaatcgagg tgcaaaaggc gatactacaa ctcgtcacgg gcgtttaggc attgtgcgag
    25141 atacaaaagc accagcgtta ctacatgagc tatttttcat tgattccgcg agtgatgtag
    25201 ctatttggaa aaacaataaa aaagcaatta tagagtcgat cacaaaagaa tggttaaaaa
    25261 gacgaggctt gaattctgtt ccgaagacaa caacgtctaa acccgctcct gctaaaccaa
    25321 caacaccttc taaaccagca acttcaaata acacttataa gaataaaaaa ctagtttcta
    25381 aagctgctaa tttgagattt tatagtaagc cttcttgggc agataaagat gtagcaggca
    25441 ctgttaataa aggcattggc ttcccgacga ttgtcgaaaa aattaaagtc ggcacggctt
    25501 atcaatacaa agttaaaaat tcaaaaggcg ctacttttta catcactgca agtgataaat
    25561 atgtagagct taaaaacaaa taataaacaa accctcgctt tgtgcggggg ctttttttat
    25621 gcaaaaaata cgctaaacaa aagcttagcg cattatttct tcttcgattt tgtagaattc
    25681 atctaacaat tcgccaggag tgcatttaaa gacctctgct attaaacgca catttttcgc
    25741 agatatttgg tctacagttt ttgagtcagc acttcttatt gtttgatgtg caagtcccgt
    25801 tgcattacct agctgataaa ttgtccaatc tttactttct aagtattttt ttataaaccc
    25861 tgccattttt cactattcct ctctatattt aatttttagc tatgagctat tg
//
LOCUS       DASEAA010000023        25885 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.023, whole genome shotgun sequence.
ACCESSION   DASEAA010000023 DASEAA010000000
VERSION     DASEAA010000023.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 25885)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25885)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25885
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.023"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..914
                     /locus_tag="U0342_000802"
     CDS             <1..914
                     /locus_tag="U0342_000802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEM2422160.1"
                     /translation="RETVLKERARAMQKTSNSNAYLEVILDAENLSDLVGRVSAVNQL
                     VDSDKSILEDQQNDEKALKTKQTAVKKKQEDQATAIHEYEAQQNKIEAQKAEKEAIVA
                     QLASDQASAENAKAGLVSERDKAAKEATARATALREATSSNVGQESSSSATSTSSGKS
                     NTTKNVASNDNNSAPSAATPSSGGYSAMIAAANAQLGKPYSLGATGPSAFDCSGFTSY
                     AFRAAGVSLPRTSGGQYAAASKISASQAKPGDLVFFNYGSGIAHVGIYVGGGQMINAQ
                     NNGVKYDNITSGYWAKYLVGYGRVANF"
     gene            1034..2344
                     /locus_tag="U0342_000803"
     CDS             1034..2344
                     /locus_tag="U0342_000803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan DD-metalloendopeptidase family
                     protein"
                     /protein_id="HEM2422161.1"
                     /translation="MLKKYGVVTILSLLVISAPLTGAHADTINDMQKRQNEIEQKKSE
                     LDKNIDSKNSELNHLESAEKDAAKELELLMKSLDATNKKLKEQEDKVSSENEKLKKLQ
                     KEMEKLRNDIRDRQKVLDNRARAIQTTGTATSYLDMIFEADDFKELVDRVTVVSAIVK
                     ADQNIMQDQKDDQDKLKVAESASQKKLENLKVLAVELEVSKNNMESQKQEKNDLVMAL
                     ANKKDLTKSEQTLLASEQGALTDEEKRLASNIAGEKAKQEAAIKAAEEKRMQEAAAAS
                     AKSSSVVKQQPSSDSSGATETVSSGGGQFIKPASGILTSGFSERTNPVTGKYESHKGQ
                     DIAGGGTVTVSAAASGTVVFSGFGASGSGFGGYGYVVKIDHGNGFQTLYGHMRAGSLK
                     VVTGQQVSQGQPIGIMGSTGQSTGQHLHFEIHKNGIPVDPAPYI"
     gene            2468..3916
                     /gene="cls"
                     /locus_tag="U0342_000804"
     CDS             2468..3916
                     /gene="cls"
                     /locus_tag="U0342_000804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM2422162.1"
                     /translation="MGLLAYLLVILLILNVFFAAVTVFLERRDTSATWAWLLVLTFVP
                     IFGFIIYLIFGRKLSGKKIFDWKGQEKIGIQESTANQIEMIRQKEFPFSDPNVKKHRD
                     LIYLLLVNDGAILTQDNEVELFVDGHEKFDALIADIEKAKDHIHLIYYIFHSDELGNR
                     LMRVLERKAAEGLNVKIIYDAMGSRTTKKSFFRTFQKNGGLVRPFFPSKLPLINFRLN
                     YRNHRKLAIIDGDVGYIGGFNIGDEYLGASKKFGYWRDTHLRVHGKAVYAMQTRFIMD
                     WNSASSTHKIDYKARYFPTFHGKGHTSMQIVSSGPDSEWQQIKNGYIKMINAAKKTIY
                     LQSPYFIPDASLLEAIKIAALSGVDVRVMIPNKPDHAFVYRATTNYAGELMETGAKIF
                     IYDNGFIHAKTLVVDGEIASVGTANMDFRSFRLNFEVNAFIYEKQMVQKLEDAFLEDI
                     LKSYQLTPELYAKRSLWIKFKEAVSRLLSPIL"
     gene            3944..5119
                     /locus_tag="U0342_000805"
     CDS             3944..5119
                     /locus_tag="U0342_000805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM2422163.1"
                     /translation="MDVFVEILNGIGRLLLQPALYVGILLAILAGFNRVRWERKSFSI
                     SIYSPWLELKSFFGVSLLFGLAISVVTSLIGFGVMIEWVAIFNVVACFLLIVGMFRLS
                     STAFTIGITSLIFYFCYYFDVSLAPFTNEAFTYDSIFIDNFMISMTFLLAVLLFVEAF
                     LIQYTSAKNPSPSLRKSKRGKLIGSFQLRKLWFVPIVMFLPGDVFTKIFEWWPVFAIG
                     SQSYSLIILPLFIGFQQQVQTQLPEEASRKIAVEVTTLATIIAVAGLLGIVMPVLTLF
                     AFMFAVIGRFWISYRHYRSEKLAPKKFGPQPDGLVVLGARAATPSARLNLKAGEKITE
                     VNSRPVHTREELYEALNLNRAFCKLKVIDNAGEPRFEQTALYENESFELGLLLVEPR"
     gene            5270..5980
                     /locus_tag="U0342_000806"
     CDS             5270..5980
                     /locus_tag="U0342_000806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2422164.1"
                     /translation="MVKILVVDDEASIVTLLQFNIEKAGFDVVTAEDGRTGYELALSE
                     KPDLIVLDLMLPEMDGIEVTKKLRQDKVNVPILMLTAKDEELDKIIGLELGADDYMTK
                     PFSPREVVARIKAILRRTEGKAEIIEEITEDSEATILIGDLKILPDSYEVYLQDDLLD
                     LTPKEFELLLFLANHRGKVFSRDQLLDTVWNYDYVGETRIVDVHVSHLRDKIELDTKQ
                     PKYIKTIRGFGYKMENVK"
     gene            5980..7755
                     /locus_tag="U0342_000807"
     CDS             5980..7755
                     /locus_tag="U0342_000807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain-containing protein"
                     /protein_id="HEM2422165.1"
                     /translation="MKKLWLKIGLSFFILFFVVMVIVGVFSGELMKSTYLNMKENQLE
                     DDAKILLQTTNMENLDLDKDAATIQKSLDPLGEDIDARITVIDSKGDVVADTKKDPEK
                     LDNHMNRPEVTDILKKGESVGISIRESDSLGYSMLYVAVPVKHQGKTDGVLRISISLE
                     SVDAAVAKLWGNLALIFGIALVIIAAISVFIARKITRPVREIIEVSTDLANHKYDSRI
                     HGKISGELQDLSISVNTLAESLETQMFEIKQNEQRLNAIVQNLVSGVMLINVDKQVIM
                     TNRTMYQILGETEITGKPFYEVIKSFALSQLIEATFETKTIQQKEIILYFPREMILDA
                     SVSPILGENGEITGIILLLHDITQIRHLENVRSEFVTNVSHELKTPVTALKGFAETLL
                     DGAMYDEVLLKKFLTIIKEESDRLHRLIMDILALSRIEQNPVAENVELVDVDEVIEQS
                     ARTIFEMATEKNIRVTIPEKTSASVMIETDRDKLQQIVINLLSNAINYTPVDGKVEVK
                     LIEQEAEVIIEVTDNGIGIPAKDIDRVFERFYRVDKARSRHSGGTGLGLSIVKHLVEN
                     CGGRIEVESQEEVGSTFRVTLPKKA"
     gene            8011..8919
                     /locus_tag="U0342_000808"
     CDS             8011..8919
                     /locus_tag="U0342_000808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2422166.1"
                     /translation="MKKKYLGIVAMLAAVMLVFAACGSDSSSSDKANGSTKGDKEVSG
                     SLTAVGSTALQPLVEAASKEFINTNPKAQINVQGGGSGTGLTQVQQGAVEIGNSDVFA
                     EEKDGVDASKLVDHRVAVVGMAPVVNKDVGVKNITKQQLIDIFTGKTTNWKDVGGKDE
                     KITIINRAEGSGTRATFEKWGLDGKTPVKAQEQDSSGTVRKIVSETPGAISYLAFSYI
                     DASVVGLSLDGVEPTEDKVATNDWKIWSYEHMYTNGEPKGLTKTFLKYMTSDEVQNNI
                     VPQLGYQSIKSMKVERDASGKLTDVK"
     gene            9013..9936
                     /gene="pstC"
                     /locus_tag="U0342_000809"
     CDS             9013..9936
                     /gene="pstC"
                     /locus_tag="U0342_000809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease subunit PstC"
                     /protein_id="HEM2422167.1"
                     /translation="MEAIKEKKLTQTSKKAHLETRGKIITFICISIMVIAAASILFFV
                     ISKGLATFTVNKVSFVDFITGTDWNPSQKDANGNPLVGALPMIIGSFAVTLFAACIAG
                     PLAIGAAIFMVEISPKFGKKILQPVMELLVGIPSVVYGFIGLSVVVPFIRDHISGSGF
                     GIAAATVVLTVMILPTVTSLSVDAIKSVPRHYREASLALGATRFQTIWKVVLRSSRSG
                     ILTAIVFGMARAFGEALAVQMVIGNSAVIPTSLFEPASTLTSILTMGMGNTVMGTLDN
                     NILWSLAMVLLAMSLFFIIVIRFIGRRRKVK"
     gene            9933..10817
                     /gene="pstA"
                     /locus_tag="U0342_000810"
     CDS             9933..10817
                     /gene="pstA"
                     /locus_tag="U0342_000810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter permease PstA"
                     /protein_id="HEM2422168.1"
                     /translation="MNVKTKDKIATGVFYAIAVLIVIILAGLLGYILVKGVPQLSWKF
                     LTTPPQSFQAGGGIGPEIWNSFYMLVITMIISVPISLGAGIYMAEYARKNWITDLIRT
                     TIEVLSSLPSIVVGLFGFLVFVIQMGWSFSVISGALTLTIFNLPLLIRVVEEALNAIP
                     NTQREAGLALGLSRWETITRVLVPAALPAIITGVILAAGRVFGEAAALIFTAGQSTPI
                     LDFTDWNPVNPASPLNIFRPAETLAVHIWKINGEGIMPDAQAVSDGASAVLILSVLLF
                     NVLARLLGKFVYKRMTSS"
     gene            10845..11660
                     /gene="pstB"
                     /locus_tag="U0342_000811"
     CDS             10845..11660
                     /gene="pstB"
                     /locus_tag="U0342_000811"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM2422169.1"
                     /translation="MLTKKPEINTILQATPDPHSLPAAMATEDLHVYYGDNHAIKGVD
                     LTFPENKVTALIGPSGCGKSTYLRALNRMNDEIDGCRMEGQILYDGININRKEVDLYN
                     VRKEIGMVFQKPNPFTKSIYENVAFGLKRHGMKNKKEIMERVEKSLRRAALWDEVKDD
                     LGKSALSLSGGQQQRLCIARAVAMQPKVLLLDEPASALDPISTSKIEDLINELKNKYT
                     IIIVTHNMQQAARVSDYTSFFYLGEVVEFSGTSELFTNPQQKQTEDYISGNFG"
     gene            11675..12454
                     /gene="pstB"
                     /locus_tag="U0342_000812"
     CDS             11675..12454
                     /gene="pstB"
                     /locus_tag="U0342_000812"
                     /EC_number="7.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate ABC transporter ATP-binding protein"
                     /protein_id="HEM2422170.1"
                     /translation="MTTETAEKVEYIIETKDVDLFYGSKQALQKIALNIKKNQVTALI
                     GPSGCGKSTFLRTLNRMNDLIPNVKTTGEIHIGGENVQDPKIDMVNLRKKVGMVFQQA
                     NPFPFSIYDNVAYGPRMHGIKDKKVLDEIVERSLRQAALWEEVHDRLDRSAIGMSGGQ
                     QQRLCIARVLAVKPDVILMDEPTSALDPISTAKVEDLILELKKDYTIVIVTHNMQQAS
                     RISDETAFFLNGRIVEFADTTSIFTNPAEKETEDYISGRFG"
     gene            12467..13126
                     /gene="phoU"
                     /locus_tag="U0342_000813"
     CDS             12467..13126
                     /gene="phoU"
                     /locus_tag="U0342_000813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate signaling complex protein PhoU"
                     /protein_id="HEM2422171.1"
                     /translation="MVVRKIFTEQLNDLHQHLMEMGMLANEAIFKAVKSLVHRDTELA
                     KQVVAEDKAINNMELSLEQRSFELIALQQPVGMDLRKIVTVLKTSSDLERIGDHAVSI
                     AKTAILIGESKVLKPIPEIPEMGEIVKAMLQDVLKAYLAEDEVAARKIAERDNEVDKL
                     HKIVYQKCIHFMQEEPEHIEDVSQLLLVSQYIERIGDYVTNVCEWIVYLKSGEIEDLN
                     R"
     gene            13394..13699
                     /locus_tag="U0342_000814"
     CDS             13394..13699
                     /locus_tag="U0342_000814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2422172.1"
                     /translation="MENAKQSLDEETLFSVTQIFKALSDPTRVQILNLLQDREYSVNE
                     IARTLAFNQTTVSHQLRFLKNLRLVKSRREGTTIYYMQDDNHVLELLTQAIRHVHHH"
     gene            13805..14191
                     /locus_tag="U0342_000815"
     CDS             13805..14191
                     /locus_tag="U0342_000815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422173.1"
                     /translation="MKKLSPMQKFIVIIGIIVMIIIAILAVVWNSNLTAVIGLSVVQF
                     IIIQFVCYVGIYSHMKVGTARGTKLFSWGILTTLLFSAIIFIFATDNFRTYSAAMIAL
                     IGYAAALMMREIENTNPANKKQKREE"
     gene            14213..14860
                     /locus_tag="U0342_000816"
     CDS             14213..14860
                     /locus_tag="U0342_000816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2422174.1"
                     /translation="MGIHQYFQSLSDLENIYRCPGKFKYQEHSVAEHSYKVTSIAQFF
                     GAVEEEAGNEVNWRALYEKALNHDYSELFIGDIKTPVKYATTELREMLSEVEESMTKN
                     FIEREIPETYQPIYRHLLKEGKDSTLEGKILAISDKVDLLYESFGEIQKGNPENIFVE
                     IYSEALATIYQYREMASVKYFLKEILPDMLAEKGIEKTELPQLTTEITTKALRDA"
     gene            14881..15120
                     /locus_tag="U0342_000817"
     CDS             14881..15120
                     /locus_tag="U0342_000817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbA family protein"
                     /protein_id="HEM2422175.1"
                     /translation="MDQIISALIFPCLLVILFARITYNRYVALLLMVILIVASAKLGY
                     TNSMWLIIIDAFSMTIGFVLATYMLRRLKKSGSDF"
     gene            15371..17347
                     /gene="uvrB"
                     /locus_tag="U0342_000818"
     CDS             15371..17347
                     /gene="uvrB"
                     /locus_tag="U0342_000818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrB"
                     /protein_id="HEM2422176.1"
                     /translation="MKDKFELVSKYSPQGDQPRAIEQLVAGLKKGLKHQTLLGATGTG
                     KTFTVSNVIQEVNKPTLVMAHNKTLAGQLYSEFKEFFPNNAVEYFVSYYDYYQPEAYV
                     PQSDTYIEKDASINDEIDKLRHSATAALFERRDVIIIASVSCIYGLGSPIEYGEMLVS
                     LRVGMEISRDQLLRKLVDIQYDRNDIDFQRGRFRVRGDVVEIFPASRDEHCMRIEFFG
                     DEIERIREVDALTGEIIGEREHVSIFPASHFVTRPDIMKKAIVNIKAELEDRLQVLRA
                     DNKLLEAQRLEQRTNYDLEMMEEMGYCSGIENYSRHLSLRPAGVTPYTLLDYFPDDFQ
                     MVIDESHVTMPQIRGMFNGDQARKQMLVDHGFRLPSALDNRPLRLEEFEKHINQIMFI
                     SATPGPYELEKNPDVIEQIIRPTGLLDPIVEIRPIQGQIDDLMDEINDRVEKNERVLI
                     TTLTKKMSEDLTNYLKEAGVKVQYLHSEVKTLERIEIIRDLRLGVYDVIVGINLLREG
                     IDLPEVSLVAILDADKEGFLRSERSLIQTMGRAARNENGRVIMYADKMTDSMRNSIGE
                     TERRRKIQIEYNEKHGITPKTIKKEIRGIIAATSAADEREAVKQHDLSKMSKKERDVF
                     IEGMEHEMKEAAKALDFERAAELRDALLEIKAEG"
     gene            17355..20225
                     /gene="uvrA"
                     /locus_tag="U0342_000819"
     CDS             17355..20225
                     /gene="uvrA"
                     /locus_tag="U0342_000819"
                     /EC_number="3.1.25.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrA"
                     /protein_id="HEM2422177.1"
                     /translation="MDKEKIVIQGARAHNLKNIDVEIPRDKLVVMTGLSGSGKSSLAF
                     DTIYAEGQRRYVESLSAYARQFLGQMDKPDVDLIEGLSPAISIDQKTTSRNPRSTVGT
                     VTEIHDYLRLLYARVGHPVCPNHGIEITSQTIEQMVDRVLEYPEKTRIQIMAPIVSGK
                     KGTHKKTIEEIKKEGYVRIRVDGEIYDINDEIEIEKNKKHSIEIIIDRIVIKEGINTR
                     LYDSIEAALRLADGYAVVDIMGDKELLFSEHYACPYCGFSVGELEPRMFSFNSPFGAC
                     PTCDGLGTKLEVDVDTVIPDRSLSLNEGAIIPWRPISSQYYPQMLASACKEFGIDMDT
                     PLEKLTKEELDIILNGSKDKEFYFEYKNDFGMTRETWIPFEGILPNIERRYRETNSDF
                     TRDQMAQYMTDLPCPSCKGYRLKEETLSVKVNNHHIGQISEFSINEALDFFDGLELSE
                     KETQIAAPIFKEVRARLGFLKNVGLDYLTMSRAAGTLSGGEAQRIRLATQIGSRLTGV
                     LYILDEPSIGLHQRDNDRLISTLQSMRDIGNTLIVVEHDEDTMMAADYLIDIGPGAGE
                     HGGRIVAAGTPEEVAKNKNSITGDYLSGKKFIPVPAKRRKGNGLELEIIGAKANNLKN
                     VNAKIPLATFSCVTGVSGSGKSSLVNEVLRKALARKLNRNHAKPGEHKEIKGIENLEK
                     IINIDQSPIGRTPRSNPATYTGAFDDIRDLFASTNEAKVRGYKKGRFSFNVKGGRCEA
                     CKGDGIIKIEMHFLPDVYVPCEVCHGKRYNGETLDIRYKGKNIAEVLEMTVEEGLEYF
                     TNQPRIARKLQTIVDVGLGYIRLGQPATTLSGGEAQRVKLASELHKRSNGKSFYILDE
                     PTTGLHADDIGRLLKVLQRLVEENGDTVLVIEHNLDVIKQADYLIDLGPEGGDGGGQI
                     IATGTPEKIARSKKSYTGKYLKPILERDKERTEERIATAKKK"
     gene            20434..21696
                     /locus_tag="U0342_000820"
     CDS             20434..21696
                     /locus_tag="U0342_000820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 domain-containing protein"
                     /protein_id="HEM2422178.1"
                     /translation="MENERKRILELVKQGIISTEEALTLLENISKKEGKTAAKENIRR
                     SAAPREEEQVEEETKEEPSYDYSKGWNNQGNPYTPPKSRKRRPEPTPENHERDEEEGG
                     ENSSKDREDSMRNMVNDLSQAGEKIGSFLNSAFKQVKDMPFPFLTSTKIERDFIYHDT
                     TLSILEFEIANGNIEFKPSDSNDIKVHAMIKLFKEYPEDEALKIFFDKTTLRVDEETL
                     RFESKSKQIVTNLTVYLPRREYDYVSVKMLNGNFHMDELSGRDLFVKTTNGNISIGTL
                     NATLAEIESINGNVRIQNGEIRDVALKTFNGNVAVKGNYYSTNLQTKNGNVNYQLTGN
                     EATFLKAKTGAGNIDVVVPAAIGVDGRFHTNLGKLLLDLKDAEILESKTESVSKSIIF
                     TKLPDAADSSLKIEAEATTGSVKIRDVK"
     gene            21763..22974
                     /locus_tag="U0342_000821"
     CDS             21763..22974
                     /locus_tag="U0342_000821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 family beta strand repeat protein"
                     /protein_id="HEM2422179.1"
                     /translation="MDKKLRRSRVDRKVGGVFGGLAEFLGIDATLLRLIYIIITIITM
                     KTGIAIIAYIVALFVIPSSDTSNEEVLERHRRRVEEKRNRHLGRNQARQEVREAMRNS
                     HHHRRPRPENAEPIHHGARKKEARPRPVREFNFDNATFRSFTIRVATGDVIIRSWDKE
                     QMKIRAVLAVHEKARSIRQLSEEKLWDYFFSQTMLDISPDNFTFESKNELLKTDLVVT
                     IPKRLYEQVKIQLLNGNLKYDDTAAEDAIIKTRHGDIRSSGASGKFLSTESADGEIFF
                     KRSTVENVDMSTAKGDIALQGSFLTTIAKAAQGDVEYILENDTSSASDLEAPNGDIRI
                     QIPPTWNVDGTLGTKKEKIYFDLKNAKIWDDAERTFVFTQNAEEISMATLQAKVGNGI
                     IKVSELETKNV"
     gene            22998..23198
                     /locus_tag="U0342_000822"
     CDS             22998..23198
                     /locus_tag="U0342_000822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspC domain-containing protein"
                     /protein_id="HEM2422180.1"
                     /translation="MKKLYKSSSQKMIAGVCGGLAEYFGIEVTIIRLLWAGAVLFFGT
                     GILLYILAAIIMPTATPESEWE"
     gene            23207..23560
                     /locus_tag="U0342_000823"
     CDS             23207..23560
                     /locus_tag="U0342_000823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725416.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin family protein"
                     /protein_id="HEM2422181.1"
                     /translation="MRWIIGVIINSVLFVALSGFFTSFHVDGFTTALLASFILAILNM
                     LIRPILLLLTLPINIFTLGLFTFVVNAIMLEMTTFFIGDSFQIDGFGTALILAAIMAF
                     ANMIINSVLWGNKEK"
     gene            23747..24685
                     /locus_tag="U0342_000824"
     CDS             23747..24685
                     /locus_tag="U0342_000824"
                     /EC_number="2.7.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HPr kinase/phosphorylase"
                     /protein_id="HEM2422182.1"
                     /translation="MTKSVTVKDLKERLNLELICSETGLERPISTSDLSRPGLELTGF
                     FSYYPEDRVQLFGMTEISFSEGMEPEERLKRYKQMCTKRTPAFVISRNLEVPKELVAA
                     AKEADIPVLRSRLKTTRLSVYITNYLESRLAPVISMHGVLVDIYGLGVLITGSSGVGK
                     SETALELVKRGHRLVADDNVEIRQEDEMTLIGSSPAIIEHLLEIRGLGIINVMTLFGA
                     GAVRSSKKITIVVHLENWDPDKHYDRVGLDQEKTKIFDMDIPKITVPVRPGRNLSVII
                     EVAAMNFRLKNMGYNAAEQFTQDLNNLIGHNSSMND"
     gene            24771..25604
                     /locus_tag="U0342_000825"
     CDS             24771..25604
                     /locus_tag="U0342_000825"
                     /EC_number="2.4.99.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prolipoprotein diacylglyceryl transferase"
                     /protein_id="HEM2422183.1"
                     /translation="MGNGVQPLDPVAIQIGSISVKWYGVIIASAVVIALLLALSEANK
                     RKMDKEIIVDLLIWAIPISIISARIYYVIFEWDFYKNNLGEIVKIWHGGIAIYGALIG
                     AVLTAIIFSRIKKISFWQLADVVAPSLIIAQAIGRWGNFMNQEAHGAETTRSFLESLH
                     LPDFIINQMYIDGAYYQPTFLYESLWNVLGFIVLLIIRRTKIRRGELFLGYVIWYSFG
                     RFFIEGMRTDSLMWGDFRVSQVLSLLLIVLSIGIIIYRRMKMNPPYYMEDKFGKVVKK
                     K"
     gene            25648..>25885
                     /locus_tag="U0342_000826"
     CDS             25648..>25885
                     /locus_tag="U0342_000826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD hydrolase-like protein"
                     /protein_id="HEM2422184.1"
                     /translation="MTGKITTLLFDLDGTLINTNELIIKTFQVTFQEFMPDRVFTRED
                     ILPFIGPSLMETFREINPAHADEMRAFYREYNLKH"
BASE COUNT         8607 a         4389 c         5378 g         7511 t
ORIGIN      
        1 aacgcgaaac tgttttaaaa gaacgtgctc gtgcgatgca aaaaacttct aattctaatg
       61 cttatcttga agttatctta gatgcagaaa atctttctga cttagttggt cgtgtttctg
      121 cagttaacca attagttgat tctgataaat ctattttaga agatcaacaa aatgatgaaa
      181 aagctttaaa aacaaaacaa actgctgtta agaaaaaaca agaagatcaa gcaacagcaa
      241 ttcatgaata tgaagcacaa caaaataaaa tcgaagcaca aaaagctgaa aaagaagcaa
      301 tcgttgctca actagcttct gatcaagcaa gtgctgaaaa tgcaaaagct ggtcttgtaa
      361 gtgaacgtga taaagcagct aaagaagcta cagcacgtgc gacagcttta cgtgaagcaa
      421 catcttcaaa cgttggacaa gaatcaagta gttctgctac ttctacatca agtggaaaat
      481 ctaatacaac gaaaaatgtt gcatcaaatg ataacaattc agcaccaagc gcagcaacac
      541 catctagtgg cggatactca gcaatgattg ctgcagctaa cgcacaactt ggaaaacctt
      601 atagccttgg agcaactgga ccaagcgcat ttgactgttc aggatttact tcttatgctt
      661 tccgtgcagc tggtgtttct cttccaagaa catctggtgg acaatatgca gcagcatcta
      721 aaatcagcgc tagccaagca aaaccaggtg acttagtatt ctttaactat ggtagcggaa
      781 ttgctcacgt tggaatttat gttggtggcg gtcaaatgat taacgctcaa aacaatggcg
      841 ttaaatatga caacatcact agcggttact gggctaaata tcttgtagga tatggccgcg
      901 tagctaactt ctaattatta ttgaaaagtt aaaaagcacc tttgtcgttt taaacaaagg
      961 tgctttttta tatggtatgg taaagggaat tatgaagttc ctagtcaaat agagaataga
     1021 aaaggagctt aaaatgttaa aaaaatatgg ggtagtaacg attcttagcc tattggttat
     1081 ttccgcgcca ctaactggtg cgcacgcgga tactatcaat gatatgcaaa agcgccaaaa
     1141 tgaaattgaa caaaaaaaat cagaactaga taaaaatata gactcgaaaa actcggaatt
     1201 aaatcattta gaaagtgctg aaaaagacgc tgcaaaagaa ttagaattac ttatgaaaag
     1261 tcttgatgcc actaacaaga aattaaaaga gcaggaagat aaagtgagct ctgaaaacga
     1321 gaaactaaag aaattgcaaa aagaaatgga aaaactgcgc aatgatattc gcgatcgtca
     1381 aaaagtactt gataatcgag cgcgtgctat acaaacaact ggaacagcca cttcttattt
     1441 agatatgatt tttgaagcag atgattttaa agaacttgtt gaccgcgtga cagttgtatc
     1501 ggcaattgta aaagcggacc aaaacattat gcaagaccaa aaagatgatc aagataaact
     1561 aaaagtagca gaatctgctt ctcagaaaaa actagagaat ctaaaagtac ttgcagtgga
     1621 attagaagtt tcgaaaaaca atatggaaag tcaaaaacaa gaaaaaaatg atttagttat
     1681 ggctctagca aacaaaaaag acttaactaa gagcgaacaa acccttttag ctagtgaaca
     1741 aggtgcgctt actgatgaag aaaaacgact tgcttctaat attgcaggtg aaaaagcaaa
     1801 acaagaggct gcaattaaag ccgctgaaga gaagcgaatg caagaagccg cagcagcaag
     1861 cgctaaaagt tcctctgttg ttaaacaaca accaagttca gattcaagtg gagctacaga
     1921 aacagtaagt tccggtggag gccaatttat taaaccagct tctggtatat taacttctgg
     1981 atttagcgaa cgaacaaatc ccgtgactgg caaatacgaa tcccacaaag gtcaagatat
     2041 tgcaggtggc ggtacagtta ctgtttcagc tgcagcatca ggaacagttg tattttcagg
     2101 gtttggcgca tcaggtagtg gatttggtgg ttatggttat gtagtaaaaa ttgaccatgg
     2161 caatggattc cagacactat acggacatat gcgtgcaggt agcttgaaag tagttaccgg
     2221 ccaacaagtt tcccaaggcc aaccgattgg tattatggga tcaacaggtc aatcgacagg
     2281 acaacatcta cattttgaaa tacataaaaa cggtattcca gtcgatccag caccttatat
     2341 ttaattcaaa aaccattgat gaaaaatcaa tggttttttt cttgtgttga aacgaactgg
     2401 aataggctaa ttgcagattt tatgatatga tactactatc agtttgtgta agaaaagggg
     2461 gaacacaatg ggactgttgg cttatctatt agtgattttg ctaattttaa atgtattctt
     2521 tgcggcagtg acggtcttct tagaaagacg cgatacatcc gccacttggg cttggttgct
     2581 agtcttaact tttgttccga tatttggttt cattatctat ttgatttttg ggagaaaatt
     2641 atcaggcaaa aagattttcg attggaaggg acaagaaaaa attgggatac aggaatctac
     2701 tgccaatcaa atagaaatga tacggcaaaa agaatttcca tttagcgatc cgaatgtgaa
     2761 aaaacatcgt gatttaatct atttattact cgtaaacgat ggtgctattt taacgcaaga
     2821 caatgaagtg gaactttttg tagatggaca tgagaaattc gatgcgctaa ttgctgatat
     2881 tgaaaaagcg aaagatcata tacatctcat ctattatatt tttcattctg atgaactagg
     2941 caatcgctta atgcgcgtgc tggaaagaaa agcagcagaa ggtttaaatg tgaaaattat
     3001 ttatgatgca atgggttcaa ggacaacgaa aaaatcattt ttccgtacgt ttcaaaaaaa
     3061 tggtggtcta gttagacctt tttttccgtc taaattacca ttgattaact ttcgtctcaa
     3121 ctaccgaaat caccggaaat tggctataat cgatggagat gttggttata ttggtggttt
     3181 taatattggt gatgaatatc ttggggcatc gaagaaattt ggttactggc gtgatacaca
     3241 tttacgtgta catggaaaag ctgtttatgc gatgcaaact cgctttatta tggactggaa
     3301 ttctgcatca tccacacata aaattgatta caaagcgcga tacttcccga cttttcatgg
     3361 gaaaggtcat acaagtatgc aaattgtttc gagtggtcct gattccgaat ggcaacaaat
     3421 caaaaatggt tacatcaaaa tgatcaatgc tgctaaaaaa acaatttatt tacaatcacc
     3481 ttattttatt ccagatgcaa gtttgcttga agcaatcaaa atcgcagcac tttctggggt
     3541 agatgtcagg gttatgattc ctaataagcc tgaccatgct tttgtttacc gcgcaactac
     3601 taactacgcc ggtgaattaa tggaaacggg agcgaaaatc tttatttatg ataatggttt
     3661 tatccacgcg aaaacactcg ttgtagatgg cgaaattgct tcagttggaa ccgcgaatat
     3721 ggatttccgg agtttccgac ttaattttga agtaaatgct tttatttatg aaaaacaaat
     3781 ggtgcaaaaa ctagaagatg cctttttgga agatattcta aaatcgtatc aactaacacc
     3841 tgaattatat gcaaaacgat ctttatggat taaatttaaa gaagcggtaa gccgactttt
     3901 atcgcctata ttatagaagt attagggaaa gctggtgtag aaaatggatg tttttgttga
     3961 aatactaaat ggaataggga gactacttct acaaccagca ttgtatgtag gaattctttt
     4021 agcgatactg gctggtttta accgtgtgag gtgggaacgg aaatcattta gtatcagtat
     4081 ttattcacct tggttagaat tgaaaagttt ctttggtgtg agtttgttat ttggattagc
     4141 tatttctgtt gttacctcgc tcattggatt tggtgtgatg atagagtggg ttgctatttt
     4201 taatgtagta gcttgtttct tgctaattgt agggatgttc cgtttgagtt caacggcatt
     4261 tactatcggt attacgagtt tgatttttta tttctgctat tattttgatg tgagtttagc
     4321 accgtttacg aatgaggcat tcacgtatga ctcgattttt attgataact ttatgatttc
     4381 catgacattt ctgctcgcag tattgttatt tgtagaagct ttcttaatcc agtatacaag
     4441 cgcaaaaaat ccctctccat ctcttcggaa aagtaagcgc ggtaaattaa tcggttcctt
     4501 tcaattaaga aaattatggt ttgtaccgat tgttatgttt ttaccaggag atgtgtttac
     4561 gaaaattttt gagtggtggc cagtctttgc tattggttcg cagtcgtatt cattaatcat
     4621 tttaccgtta ttcatcggct tccaacaaca agtacagaca caacttccag aagaagcaag
     4681 ccgtaaaatt gctgttgagg taacaacatt agcaacaatt attgctgtag ctggtttatt
     4741 aggaattgtg atgccagtac tgacattgtt cgctttcatg ttcgctgtaa ttggtcgatt
     4801 ttggatttct tatcgccact atcgttccga aaaattagca ccaaagaaat ttggtcctca
     4861 gccagatggg cttgtagttc tgggtgctcg tgcggccact ccgtctgcgc gactaaactt
     4921 gaaagctggt gaaaaaatta cagaagtaaa cagtcgacca gtgcatactc gcgaggaact
     4981 ttacgaagcg ctaaacttaa accgagcatt ttgtaagctg aaagtaattg ataacgctgg
     5041 tgaaccacgt tttgaacaaa cagcacttta tgagaatgaa tcatttgaac ttggtttgtt
     5101 attagtagag ccaagataat tttaggacac cagtgttgtt tgaaagcagc attggtgttt
     5161 taagtttttg taaagataag attaatataa aggcatttct acccgaaaaa ggttaattca
     5221 tgctatattt tagataaaag tgttacataa agaagggatg ggaagtacgt tggtaaaaat
     5281 tcttgtagtt gatgatgaag cttctattgt tacgttactg caatttaaca ttgaaaaagc
     5341 tgggtttgat gtggtaacag cagaagacgg cagaaccgga tacgaactcg ctttgtccga
     5401 aaaaccagat ttaattgtgc ttgatttaat gcttcctgag atggacggaa tcgaagtaac
     5461 aaaaaaactt cgccaagata aagtaaatgt gccaatttta atgttaacgg caaaagatga
     5521 agaattagat aaaattatcg gactggaact tggagcagat gactatatga ctaaaccgtt
     5581 tagcccaaga gaagtagttg caagaattaa agcaatcttg cgtcgaacag aaggaaaagc
     5641 cgaaataata gaagaaataa ccgaagattc ggaagctacg atattaattg gtgatttgaa
     5701 aattttgcca gatagttatg aagtgtattt acaagatgat ttacttgatt taacgccaaa
     5761 agaatttgag ttattgctat tcttggcaaa tcatcgtggc aaagttttct ctagagacca
     5821 attgctcgat actgtctgga actatgatta cgttggagaa acccgaattg tagacgttca
     5881 tgtcagccat ttgcgcgata aaatcgaact agatacaaaa caacctaaat acatcaaaac
     5941 aattcgtggc ttcggttata aaatggagaa cgtgaaataa tgaagaaatt atggctgaaa
     6001 atcgggttat ccttttttat cttatttttc gttgtgatgg ttattgttgg cgttttttcc
     6061 ggggaactaa tgaaatcaac gtacttaaat atgaaagaaa atcaattaga agatgacgca
     6121 aaaattctgc ttcaaacaac taatatggag aatttagatt tagataaaga tgccgcaact
     6181 atccaaaaaa gtcttgatcc acttggcgag gatattgatg cacgcattac ggtgatcgat
     6241 agcaaaggcg acgtggtagc tgatacaaaa aaagacccag aaaaacttga taaccatatg
     6301 aatcgccccg aagtaacaga tattctgaaa aaaggggaaa gcgttggtat ttcaatccgt
     6361 gaaagtgatt cacttggtta tagtatgctt tatgtcgcgg ttcctgttaa acatcaaggc
     6421 aaaacagatg gtgtactgag aatttcgatt tcacttgaat ctgttgatgc ggcggttgct
     6481 aaactctggg ggaacttagc gcttattttc ggtattgcac ttgtaattat cgcagcaatc
     6541 agtgttttta ttgctagaaa aatcactaga ccagttcgcg aaatcatcga agtctctaca
     6601 gatttggcca atcataaata cgatagtcgc atccacggta aaataagcgg agaacttcaa
     6661 gatctctcca ttagtgtaaa cacattagca gaaagcttgg aaacgcaaat gtttgaaatt
     6721 aagcaaaatg agcaacgact taatgctatt gtccaaaact tagtaagtgg cgtaatgctg
     6781 attaatgtcg ataaacaagt catcatgacc aaccgcacca tgtatcaaat tttaggagag
     6841 acagaaatca ccggcaaacc attttatgaa gtaattaaaa gttttgcact gagccagttg
     6901 atagaagcga cttttgaaac aaaaaccatt caacaaaaag aaattattct ttatttcccg
     6961 cgcgaaatga ttttggatgc aagtgtttca ccaattttag gggagaatgg ggaaattact
     7021 gggattattt tattacttca tgatatcact caaattcgcc atttggaaaa tgttcgttct
     7081 gaatttgtca ccaacgtttc tcatgaatta aaaacacccg tgacggctct caaaggattc
     7141 gcggaaacat tacttgacgg cgcaatgtac gacgaagtgc tactaaaaaa attcctaacg
     7201 attattaaag aagaaagtga tcgattgcac cgtttgatta tggatattct cgcactttct
     7261 agaattgaac aaaatccggt cgcggaaaac gttgagctgg ttgacgttga cgaggtaatt
     7321 gaacaatctg ctcgcactat ttttgaaatg gcaactgaaa aaaatattcg agtaaccatt
     7381 ccagaaaaaa caagtgcatc cgttatgatt gaaacagatc gtgacaagct gcaacagata
     7441 gtaattaact tgctttctaa tgcaatcaac tacaccccag tcgatggaaa agtagaagtt
     7501 aaattaatcg agcaagaggc agaagttata atagaagtaa ctgataacgg aattggcatc
     7561 ccggctaaag atattgaccg cgtgtttgaa cgattctacc gagtggataa agcccgcagc
     7621 agacactcag gaggcactgg acttggactt tccatcgtca agcatttagt tgaaaactgt
     7681 ggtgggcgaa tcgaagtaga aagccaagaa gaagttggct cgaccttccg cgtcacttta
     7741 ccaaaaaaag cctaacaaat atcctgtttg aaagaatgta atctttcaga caggatattt
     7801 ttattttatt tacgaaagaa acaaatttgg tgtaataatt tactagtttg ccttctgttt
     7861 gaaagatatt cataaaaaag tttacatttt cgacaaaaaa tgtggttatt tacaattact
     7921 taacattagc tacacaccac cttaaatctc agacgttata gtaatacttg taaggaataa
     7981 caattaaaaa aacaaggtgg gaataagata atgaaaaaga agtatttggg aatagtagca
     8041 atgttagcag cagtaatgct tgtcttcgca gcatgtggaa gtgacagcag ttcatcagat
     8101 aaagcaaacg gatcaacaaa aggggataaa gaagtttctg gctcattaac agcagtcgga
     8161 tccactgcac ttcaaccact cgttgaagca gcttccaaag aatttattaa cactaaccct
     8221 aaagcacaaa tcaacgtgca aggcggtggt tctggaactg gtttaacaca agtacaacaa
     8281 ggcgcagttg aaattggtaa ctcggacgta ttcgctgaag aaaaagatgg cgtagatgct
     8341 tcgaaactgg ttgaccatcg tgtagcagtt gtcggaatgg ctccagtagt aaacaaagat
     8401 gtaggcgtta aaaacattac aaaacaacaa ttaatcgata tcttcactgg taaaactact
     8461 aactggaaag acgttggcgg taaagacgaa aaaattacaa tcatcaaccg tgcggaagga
     8521 agcggaacac gtgctacttt cgaaaaatgg ggacttgatg gtaaaacacc agttaaagca
     8581 caagaacaag attcatccgg tacagttcgt aaaatcgtaa gcgaaactcc aggagcaatc
     8641 agctacctag cattctctta cattgacgct tccgtagttg gactttcatt agatggcgtt
     8701 gaaccaactg aagataaagt tgcaactaac gactggaaaa tctggtctta tgaacatatg
     8761 tatacaaatg gcgaaccaaa aggcttaaca aaaacgttct taaaatacat gacttctgat
     8821 gaagtacaaa ataatatcgt accacaactt ggttaccaat caatcaaatc catgaaagtg
     8881 gaacgtgatg catctggtaa actaactgac gtaaaataaa aagaatgaaa tgggcgtcta
     8941 tcctagtaat accgggatag acgtataccc atgttaggag taaacatggg aggagaaagg
     9001 agcttacgtg acttggaagc gataaaagaa aagaagctta cacaaacttc taaaaaggcg
     9061 catctagaaa ctagaggcaa aattattaca ttcatctgta tttcaatcat ggttattgcc
     9121 gcagcgtcta ttttgttttt tgttatatcg aaaggtttag caacatttac agttaataaa
     9181 gtgtcttttg ttgattttat aactggaaca gactggaatc cttcgcaaaa agatgcaaac
     9241 ggaaatcctc tagttggcgc tttgccaatg attattggtt cttttgcagt aacgcttttt
     9301 gccgcttgta ttgcaggacc acttgcaatc ggtgcagcca tttttatggt ggaaatctca
     9361 cctaagtttg ggaaaaagat tttgcaacca gttatggaac ttttagttgg tattccatct
     9421 gttgtttatg gattcattgg actaagtgtt gtcgttccat ttattcgtga ccatatttcg
     9481 ggaagtggct ttggtattgc cgctgcgacc gtagttttaa cagtaatgat tttgccgact
     9541 gttacttcac tcagcgtaga tgcgattaaa tctgttccac gtcactaccg agaagcttcg
     9601 ttggcacttg gcgcaacacg tttccagacg atttggaaag tagtgcttcg tagctcgcgt
     9661 tcaggaattt tgacagcgat tgtattcggg atggctcgtg cattcggtga agctcttgct
     9721 gtacaaatgg ttattgggaa ctctgctgtt attccaacct cattatttga gccagcttct
     9781 acattaacta gtattttaac aatgggtatg ggaaatacag ttatggggac gcttgataat
     9841 aatatccttt ggtcacttgc aatggtgtta ctcgcaatgt cactattttt catcattgtg
     9901 atccgcttca tcggacgtag gaggaaagtc aaatgaatgt aaaaacaaaa gataaaatcg
     9961 cgacaggcgt tttctatgct attgctgtat taattgtcat tattttagct ggcttacttg
    10021 gctatatttt agtaaaaggt gttccgcaac ttagctggaa gtttttgacg accccaccac
    10081 agtcgttcca agctggcggc ggaatcggtc ctgaaatctg gaattcattt tatatgctcg
    10141 ttattacgat gattatttct gttcctatct cgctcggtgc gggaatttat atggcagaat
    10201 atgcgcgtaa aaattggatt acagatttaa ttcgtacaac gattgaagtg ctttcctcac
    10261 ttccatctat tgtcgtaggg ctattcggtt tccttgtttt tgttattcaa atggggtgga
    10321 gcttctcggt tatttccggg gcgcttacac taacgatttt caatttacca ctattaattc
    10381 gtgttgtcga agaggcactt aatgctattc caaacacgca gcgtgaggca gggcttgctc
    10441 tcggtttatc cagatgggaa acaatcacgc gagtacttgt tccagccgca ctcccggcaa
    10501 ttattaccgg agttatctta gcagcaggac gggtatttgg tgaagcagcg gcgcttattt
    10561 tcacagccgg tcaaagtaca cctattcttg atttcactga ctggaatccg gtcaatccag
    10621 cttcaccact aaatattttc cgcccagcag aaacgttagc tgttcatatt tggaaaatta
    10681 atggtgaggg gattatgcca gatgcacaag ccgtttctga cggagcttct gcggtattaa
    10741 ttctttccgt attacttttc aacgtcttag ctcgcctgct tggaaaattt gtttataaac
    10801 gcatgacctc gtcttaaaaa gccaggaaaa ggagatttta aatgatgtta acgaagaaac
    10861 ctgaaattaa tacaatttta caagcaacac cagatcctca ttcacttcct gctgcaatgg
    10921 cgaccgagga tttgcacgta tattatggcg ataatcacgc aattaaaggt gttgatttaa
    10981 ccttcccgga aaataaagtg acagctttga ttggaccatc tggttgcggt aaatccacat
    11041 atttaagagc attaaaccga atgaacgatg aaattgatgg ttgccgcatg gaaggtcaaa
    11101 ttttatacga tgggattaat attaatcgta aagaagttga tttatacaat gttcgcaaag
    11161 aaataggcat ggtattccaa aaaccaaatc cattcacgaa atctatctat gaaaatgttg
    11221 cttttggcct caaacgtcat ggcatgaaga ataaaaaaga aattatggag cgtgtggaga
    11281 aaagtttgcg ccgagcagct ctttgggacg aagtaaaaga cgatttagga aaaagcgcac
    11341 tatccctttc tggtgggcag caacaacgtc tttgtattgc tagagctgtc gcaatgcagc
    11401 caaaagtatt gttacttgat gagccagcat ctgcacttga tccaatttcg acaagcaaaa
    11461 ttgaagattt aattaatgag ttgaaaaata aatatactat tataatcgtg acgcataata
    11521 tgcaacaagc ggctcgtgta tccgactaca cttctttctt ctatctgggg gaagtcgtgg
    11581 aattctcagg aacatccgaa cttttcacga atccgcaaca aaaacaaact gaagactata
    11641 tttctggtaa ctttggctag aaaggagctt ttttatgaca actgaaactg ctgaaaaagt
    11701 agagtatatc attgaaacaa aagatgtaga tttattttat ggttccaaac aagcactaca
    11761 aaaaatcgct ttaaacatta agaaaaatca agtgaccgct ctaattggtc cgtcggggtg
    11821 tgggaaatca acttttctgc gtacgcttaa ccgaatgaat gatttaattc ccaatgtgaa
    11881 aacgactgga gaaatccata ttggcggtga aaatgtacaa gatcctaaaa ttgacatggt
    11941 taacttacga aaaaaagtgg gtatggtttt ccaacaagca aacccattcc cgttttcgat
    12001 ttatgataat gtcgcttatg gtccgcggat gcatggtata aaagacaaaa aagtacttga
    12061 tgagattgta gaaagaagtt tgcgtcaagc ggctctttgg gaagaagtgc atgataggct
    12121 ggatcgttcg gcgattggga tgtcaggtgg acaacaacag cggctttgca tcgcacgagt
    12181 tctagctgtt aaaccggatg ttattttgat ggatgagcca acttctgcac tggacccaat
    12241 ttcgacagca aaagtagaag atttgatttt agaattaaag aaagactata cgattgttat
    12301 tgtgacgcat aatatgcaac aagcatcccg gatttccgat gaaactgcct ttttcttaaa
    12361 tggtcgcatc gtggagttcg cggatacgac gagtattttt accaacccag cagaaaagga
    12421 aacagaagac tatatttcag gaagatttgg ataaaggagt gttattatgg tagtcagaaa
    12481 aatttttacg gaacagttaa acgacttgca ccaacatcta atggaaatgg gaatgcttgc
    12541 gaatgaagcg atttttaaag cagtcaagtc acttgtacac cgcgataccg agcttgctaa
    12601 acaagtagtt gcagaagata aagcaatcaa taacatggag ctttcactgg aacaacgctc
    12661 ttttgagttg atcgctttgc aacagccagt tggtatggat ttgcgaaaaa tcgtcacagt
    12721 actaaaaaca agttcggatt tagaacggat tggtgaccac gcagtaagta ttgccaaaac
    12781 ggctatttta attggtgaaa gtaaggtttt aaagccgatt cccgaaatac cagaaatggg
    12841 cgaaattgta aaagcaatgc tacaagacgt attaaaagct taccttgcag aagatgaagt
    12901 tgctgctcgc aaaattgctg agcgcgataa tgaagtcgat aagcttcata aaatcgttta
    12961 tcaaaaatgt attcatttta tgcaagaaga gccagagcat atagaagatg tttcacaact
    13021 actcttagtt tcccagtata tcgaacgtat tggtgattat gtaacaaatg tgtgcgaatg
    13081 gattgtttac ttgaagagtg gcgaaattga agatttaaac agataaaaaa agcccgattt
    13141 tcctttccac aggttaatcg ggcttttttt ggtgtgttag gcggtttaaa taacttctca
    13201 atatttaaaa cccttttatt ccccagctct cctttcttaa tgataaaaaa attgtatcat
    13261 tgaaacagag aaaatcttgt ttttgctcat atttaatcat tttttaatag atgtgttgtt
    13321 aaacttgcgg aatcattcct atttaagtat catatgagta tatgaacata tatggaaaat
    13381 ggagtgatat ttaatggaaa acgcaaaaca atctttagat gaagaaacgc tatttagtgt
    13441 tacgcagata tttaaggcgc tttctgatcc aacgcgtgtg cagattttaa atttgcttca
    13501 agaccgcgaa tactctgtga atgaaattgc gcgaacactt gcgtttaacc agacaactgt
    13561 ttctcaccag ctgcgttttt taaaaaactt aagacttgtg aaatcaagac gtgaaggcac
    13621 gacgatttat tatatgcaag atgataatca cgtattagaa ttactcacac aagcaattcg
    13681 ccacgtgcac catcattaag taagaacgct cagaaaacct tttaggaatg atgggtgttt
    13741 tttatcccaa ataaacagag attatggtaa agtaagtaac aaataaaagc ttggaggaag
    13801 tattttgaag aaattatcac caatgcagaa gttcattgtt attataggga ttattgtgat
    13861 gattattatt gcgattttag cagttgtttg gaatagtaat ctcacagcag ttattggttt
    13921 atctgttgtg caatttatta tcattcagtt cgtttgttat gttggtattt attcgcatat
    13981 gaaagtcgga acggcgcgcg gaacaaagtt gtttagctgg ggaatactga cgacactttt
    14041 attttcagca attattttta tttttgctac cgataatttt agaacttact cagccgcaat
    14101 gattgcttta attggttatg ctgcggcgct gatgatgcgt gaaatcgaaa acactaatcc
    14161 ggccaataaa aaacaaaaac gtgaagaata aaacgaagga tggagggata atatgggaat
    14221 tcatcaatat ttccaaagtt tatcagattt agaaaacatt tatcgttgcc caggaaaatt
    14281 taaatatcaa gagcactctg ttgcagaaca ttcatataaa gttacatcca ttgctcaatt
    14341 tttcggcgct gtagaggaag aagctgggaa tgaagtgaat tggcgtgcac tatacgaaaa
    14401 agcgctaaac cacgattatt cagagctttt catcggggat attaaaacgc ctgtgaaata
    14461 tgcaacgaca gaactccgcg aaatgctttc agaagtagaa gaaagcatga caaaaaattt
    14521 tattgaacga gaaatcccag aaacgtatca accaatttat cgtcatttgc taaaagaagg
    14581 taaagacagt acgttggaag ggaaaatcct cgcaatttct gataaagtag acctgttata
    14641 tgaatccttt ggtgaaattc aaaaaggaaa tccagaaaat atttttgtgg agatttatag
    14701 tgaagcactt gcaaccattt atcagtaccg agaaatggct agcgtgaagt attttttaaa
    14761 agaaatttta ccagatatgc ttgctgaaaa aggtatcgaa aaaacagaat taccacagct
    14821 tacaacggaa ataacgacca aagcattgcg agacgcgtaa aaaaggggga ggaaagtaag
    14881 atggatcaaa ttatatctgc gcttattttc ccttgtctcc ttgttattct ttttgcgaga
    14941 atcacctata atcgttatgt cgctttgctt ttgatggtaa ttttgatcgt cgcttctgcc
    15001 aagttaggtt atacaaattc tatgtggctt attattattg atgctttttc gatgaccatt
    15061 ggttttgtgc ttgcaacata tatgctgcga cgtttaaaga agagtggcag tgatttttaa
    15121 caaagcaaat atataggtag aaaagcgtaa aagtgataaa ataaagaaaa gcgtaatcca
    15181 caggttgcgt tttttatttt tcaacaaatg cgaaaatatg ttcggttttt gctaggctaa
    15241 ttaaaatatt tatgataaaa tagaaacatt aacggatctg aaaaatccgc tttttgcttt
    15301 gctggacttt tcacaaataa agcttttcag ataccagaat cggaccgata aagaataggg
    15361 ggaatccgag ttgaaggata aatttgagtt agtttctaag tatagcccac aaggagacca
    15421 acctagagcg atagaacaat tagttgcggg attaaaaaaa ggcttgaaac accaaacttt
    15481 acttggtgca accggtacag ggaaaacttt taccgtatcc aacgtgattc aggaagtaaa
    15541 taagccaaca cttgtcatgg cccacaataa gacgttagca ggacagctgt atagcgagtt
    15601 taaagaattt ttcccaaata acgctgtaga atattttgtc agttactatg attactatca
    15661 accagaagcc tatgttccgc aaagcgacac gtatatcgaa aaagatgcaa gtatcaatga
    15721 tgaaattgat aagcttcgtc actctgctac cgctgcgctt tttgaacgtc gtgatgtaat
    15781 tatcattgcg agtgtatcgt gtatttatgg cttaggttcg ccgattgaat atggagagat
    15841 gctcgtttcg cttcgtgttg gtatggaaat tagccgtgat cagctactgc gtaaattagt
    15901 agacattcaa tatgatcgaa atgatataga ttttcaacgt ggacgcttcc gtgttcgcgg
    15961 tgatgttgtc gaaattttcc cggcatcaag agacgagcac tgcatgagga ttgaattttt
    16021 cggtgatgaa attgaacgta ttagagaggt agatgcactt actggcgaaa ttattggaga
    16081 aagagaacat gtttccattt tcccggcatc tcactttgtt accagacctg atattatgaa
    16141 aaaagcaatt gttaatataa aagcggaact cgaagaccgc cttcaagttt tacgtgcaga
    16201 taataaatta ctcgaagctc agcgccttga acaacggacg aattatgatt tagaaatgat
    16261 ggaagaaatg ggttattgct ctggtattga gaactattct agacatttat cccttcgtcc
    16321 agcgggagtt acaccataca cgttactcga ttacttccca gacgatttcc aaatggtaat
    16381 tgatgagtca cacgttacga tgccacaaat ccgtggtatg tttaacggtg accaagccag
    16441 aaaacaaatg ctagttgatc atggttttag actaccaagt gctttagata accgtccgct
    16501 aagattagaa gaatttgaaa aacatatcaa tcaaattatg ttcatttccg ccacaccagg
    16561 cccttatgaa ctagaaaaaa atccggatgt cattgaacaa atcatccgac caaccggctt
    16621 gctagatcca atcgtagaaa ttcgcccgat tcaaggacaa atcgatgact taatggatga
    16681 gattaatgat cgtgtcgaga aaaacgaacg tgttttaatc accactttaa cgaaaaaaat
    16741 gtcagaggat ttgaccaatt atctcaaaga agctggtgtt aaagtacaat atctccactc
    16801 ggaagtgaag acgttagagc gaatcgaaat cattcgcgac ctccgacttg gtgtgtatga
    16861 tgttatcgtt ggaattaatt tacttcgcga aggaatcgat ttacctgaag tatctcttgt
    16921 cgctatttta gatgcggaca aagaaggatt ccttcgttcc gagcgttcct taattcaaac
    16981 aatgggtcga gccgctcgta atgaaaacgg tcgagtaatc atgtatgctg ataaaatgac
    17041 cgattcgatg cgcaattcta ttggcgaaac agaacgccgt cgtaaaatcc aaattgaata
    17101 taatgaaaaa catggcatta cgccaaaaac aatcaaaaaa gaaattcgtg gtatcatcgc
    17161 agcgacttct gccgcagatg aaagagaagc agtgaagcaa catgatttaa gcaaaatgtc
    17221 taagaaagaa cgcgatgtgt tcattgaagg tatggaacat gaaatgaaag aagcagccaa
    17281 agcacttgat ttcgaacgtg ctgctgaact tcgcgatgct ttactggaaa taaaagcgga
    17341 aggatgaagc gaaattggat aaagagaaaa tagtaattca gggtgcaaga gcccataact
    17401 taaaaaacat tgatgtagag attcctagag acaaattagt agttatgact ggactttcag
    17461 gttcaggtaa atcttcgctt gcttttgata cgatttacgc agaaggacaa agacgttatg
    17521 tagagtcttt gtccgcatat gcgcgccaat ttttaggcca aatggataaa ccagatgtag
    17581 atttaattga aggattaagc cctgccattt cgattgatca aaaaacaaca agccgtaatc
    17641 cacgttcaac tgttggtact gtcacagaaa tccatgacta tttgcgctta ctttatgctc
    17701 gtgttgggca tccagtttgt ccaaatcacg gtattgaaat cacttcccaa acaatcgaac
    17761 aaatggtgga tcgcgttcta gaatatccag aaaaaacacg tattcaaata atggctccaa
    17821 tcgtttctgg taaaaaagga acccataaga aaactattga ggaaataaaa aaagaaggct
    17881 atgttcgaat tcgtgttgat ggagaaattt atgatatcaa tgacgaaatt gaaatcgaga
    17941 agaataaaaa gcattctatt gaaatcatta ttgatcgcat tgtgattaaa gaaggtatca
    18001 atactcgttt gtatgactcc attgaagcgg ctcttcgttt agctgatggt tatgcggttg
    18061 ttgatataat gggcgataaa gaattattat ttagtgaaca ctatgcgtgc ccttattgtg
    18121 ggttttccgt tggtgaatta gaaccaagaa tgttctcttt caatagccca tttggcgctt
    18181 gtccaacatg tgatggactt ggcactaaac ttgaagtcga tgtcgacaca gttattccag
    18241 atagaagtct gtctctaaat gaaggtgcta ttattccttg gcgcccaatt agctcgcaat
    18301 actatccaca aatgctagct tcggcttgta aagagttcgg aatagatatg gatacacctt
    18361 tggagaaact aacgaaagaa gaattagata ttattttaaa tggatcaaaa gacaaagaat
    18421 tctacttcga atacaaaaat gattttggaa tgacacgcga aacgtggatt ccttttgaag
    18481 ggatacttcc aaatatcgaa cgccgctatc gtgagacaaa ttccgacttt acgcgtgatc
    18541 aaatggcgca atatatgact gatttaccat gtccatcttg taaaggttat cgtctaaaag
    18601 aagaaacact ttctgttaaa gtaaacaatc atcatattgg ccaaatcagt gagttttcta
    18661 ttaatgaagc actagatttc tttgatggct tagaactctc tgaaaaagaa acacaaattg
    18721 cagcgccgat tttcaaagaa gttcgtgcta gactaggctt cttaaaaaat gttgggctcg
    18781 actatctaac aatgagccgt gcagctggga cgctatctgg tggtgaggcg cagcgaattc
    18841 gacttgctac acaaatcggt tccagactta ctggggtact ttatattcta gatgaacctt
    18901 ccatcggtct tcatcaacga gataatgacc gtttaatcag cacactccaa agtatgcgtg
    18961 acattggaaa cacgcttatt gtcgttgagc atgacgaaga tacgatgatg gccgcagatt
    19021 atcttattga tattggtcca ggtgcagggg aacacggtgg acgaattgtt gcagccggaa
    19081 ctccagaaga agttgccaaa aataaaaatt ccatcactgg tgactatctt tcaggtaaaa
    19141 aatttattcc agttcctgct aaacgtagaa aaggtaacgg actagaatta gaaattattg
    19201 gtgctaaagc aaataatctc aaaaacgtaa atgcaaaaat tccactagct actttttctt
    19261 gtgtaactgg agtttcaggt tcaggtaaaa gttcgctagt gaatgaagta ttacgaaaag
    19321 cattagcgag aaaactaaat agaaaccacg caaaaccagg tgaacataaa gaaataaaag
    19381 gtatcgaaaa cctagaaaaa atcatcaata tagatcaatc accaatcgga agaacaccga
    19441 gatcgaatcc agctacttat acaggggctt tcgatgatat tcgtgacctt tttgcaagca
    19501 caaatgaagc caaagttcgc ggttataaaa aaggtcgctt tagttttaac gtaaaaggtg
    19561 gacgttgtga ggcgtgtaaa ggcgacggaa tcatcaaaat tgaaatgcat ttcttgcccg
    19621 atgtatatgt accctgtgaa gtttgtcatg gaaaacgata caatggcgaa acgttagata
    19681 ttcgttacaa aggcaaaaat attgctgaag tattagagat gactgtagaa gaaggcctag
    19741 aatatttcac taaccaaccg agaattgcac gtaaactgca aacgattgtg gatgttggac
    19801 ttggttatat tcgacttggg caacctgcta cgactctttc tggtggtgaa gcacagcgtg
    19861 ttaagctagc ttcggaactt cacaagcgta gtaacggaaa atctttctat attcttgatg
    19921 aaccaaccac tggtctccac gcagatgata ttggtcgttt actcaaagta ttacaaagac
    19981 ttgtagaaga aaatggcgac acagtacttg ttattgagca taaccttgac gtaattaaac
    20041 aagcggatta cttgattgat ttaggaccag aaggcggcga tggtggcggt caaattattg
    20101 caaccggcac acctgaaaaa atcgctcgct cgaaaaaatc atatacaggt aaatacttga
    20161 aaccaatttt agaacgcgat aaagaacgca cagaagaacg aatcgcaaca gccaagaaaa
    20221 aataatcaaa accccgctta tgcaaaacat aagcggggtt tttaatagtc cttaagaaca
    20281 aaccacccaa agtccaaaca aataatcatc ctctggttgt atgacagaaa ttatattttc
    20341 cttcataata gagtcataga taaaacagat atgtcacttg catgtgaaag caagcctaaa
    20401 atagtttagc ctaaattata ggaggaaatg aaaatggaaa atgaacgtaa acgtattctc
    20461 gaattagtaa aacaaggtat tatatccact gaagaagccc ttactctact tgaaaatatt
    20521 tccaaaaaag aaggtaaaac agcagcaaaa gaaaatattc gtcggtctgc ggctccgaga
    20581 gaagaagaac aagtcgaaga agaaacaaaa gaagaaccat catacgatta cagtaaaggt
    20641 tggaacaatc aaggaaaccc ttatacacct ccaaaaagtc gtaaaagacg cccagaaccg
    20701 actccagaaa atcatgaaag agacgaagaa gagggcggcg aaaattcttc taaagatcgt
    20761 gaagactcca tgcgcaatat ggttaatgat ttatcccaag cgggtgaaaa aatcggttct
    20821 ttcctaaata gtgcatttaa acaagtgaaa gatatgccat tcccgttctt aacttcaacg
    20881 aaaatcgaac gtgatttcat ttatcatgac acaacacttt ctattttaga atttgaaatt
    20941 gctaatggta atattgaatt taaaccatct gattcgaacg atatcaaagt tcacgcgatg
    21001 attaaactat tcaaagaata tccagaagat gaagcactta aaatcttctt tgataaaaca
    21061 actttacgtg tagatgaaga aactttacgt tttgagtcta aatcaaaaca aatcgttaca
    21121 aacttaactg tatacttgcc tcgtcgtgag tacgattatg tttccgttaa aatgcttaat
    21181 ggtaacttcc atatggatga attatccggt cgtgatttat ttgtgaaaac aaccaatggt
    21241 aatattagta ttggtacttt aaatgctact ttggcagaaa ttgagtcaat taatggtaat
    21301 gttcgtatcc aaaatggtga aattcgtgat gttgcactga aaacattcaa cggtaacgta
    21361 gcagtaaaag gtaattatta ctccaccaat ttacaaacta aaaatggtaa tgtaaattat
    21421 caactaactg gaaatgaagc tactttctta aaagcaaaaa ctggtgcagg taatatcgat
    21481 gtggttgtac ccgcagcaat tggtgtagat ggccgtttcc acacaaactt aggtaaatta
    21541 cttttagatt taaaagatgc cgaaattctt gaatctaaaa cagagtccgt aagtaaatca
    21601 attattttca ctaaactacc agatgcagct gattcttcct tgaaaatcga agcagaagca
    21661 actactggct ccgtaaaaat tcgcgatgta aaataattaa acgaaatcta gcgccggaat
    21721 gcgcgctaga ttttacatag atataagaaa ggaagagcta acatggataa aaaattaaga
    21781 agatcaagag tggaccggaa agtcggcggt gtgtttggtg gactagctga gtttctaggg
    21841 atagatgcca cacttctgcg actaatttat attatcatca ccattattac gatgaaaacc
    21901 ggtattgcga ttatcgctta tatagtagcc ttgtttgtga ttccttcttc cgatacaagt
    21961 aatgaagaag tacttgaacg gcatcgtcgc cgcgtggagg aaaaaagaaa tcgtcaccta
    22021 ggacgtaatc aagctagaca ggaagtgcga gaagcaatga gaaatagtca tcatcataga
    22081 agaccaagac cagaaaatgc tgaaccaatt catcacggcg caaggaagaa agaagctcgc
    22141 cctcgtccag tacgagaatt caattttgat aatgcgactt tccgttcctt tactattaga
    22201 gtggcgaccg gggacgttat tatccgttct tgggacaaag aacaaatgaa aatccgtgca
    22261 gtactagctg tacatgaaaa agcgcgatct attcgtcaat taagcgaaga aaaactatgg
    22321 gattacttct ttagtcaaac gatgcttgat atttctccgg acaatttcac tttcgaatca
    22381 aaaaatgaac ttttaaaaac cgatttagtt gttactattc caaaacgttt atacgagcaa
    22441 gtgaaaattc agctcttaaa tggtaatttg aaatatgacg atacagctgc tgaagatgct
    22501 attattaaaa cacgtcacgg tgatattcgc tcatcaggag ctagtggtaa atttttgagc
    22561 acagaatcag cggatggaga aattttcttc aaacgtagca cagtagagaa tgtagatatg
    22621 tctactgcta aaggagatat tgcgcttcaa ggtagctttc ttacaacgat tgctaaagct
    22681 gcacaagggg acgttgagta tatactcgaa aatgatactt cctcggcctc agatttagaa
    22741 gcaccaaatg gcgatattcg aattcaaatt ccgccaacat ggaatgtcga tggaacactt
    22801 ggaactaaaa aagaaaaaat ctattttgac ttaaaaaatg caaaaatttg ggatgacgca
    22861 gaaagaactt ttgtcttcac tcaaaacgca gaagaaataa gcatggcgac acttcaagca
    22921 aaagtaggaa atggaattat taaagtttct gaactggaaa caaagaacgt ttaataaaat
    22981 gaaaggaagg gaaaacaatg aaaaagttat ataaatcttc atcacaaaaa atgattgctg
    23041 gtgtctgtgg tgggcttgca gaatactttg gcattgaagt aaccatcatt cgtttacttt
    23101 gggctggagc agttctattc tttggtactg ggattttact gtatattcta gctgcgatta
    23161 ttatgccaac agcaacacct gaatcagaat gggagtgaac taaaacatgc gttggattat
    23221 aggcgtaatt attaactcgg tgcttttcgt agctttatca ggattcttta caagttttca
    23281 tgtagatgga ttcacgacag cgctactagc gagttttata ttagcaattc taaatatgct
    23341 aattagacct attttactcc ttttaacatt accaattaat attttcacac ttggactttt
    23401 cacctttgtt gtgaatgcaa ttatgcttga aatgactacc ttctttattg gagattcttt
    23461 ccaaattgat ggttttggaa cagcgttaat tctcgcagca attatggcat tcgcaaacat
    23521 gattattaat tccgttttat ggggtaacaa agaaaaataa acattccagc tacattttga
    23581 ggctaaaaat agtcttttaa atgtagctgg ttttgctatg tagagccatt tgagtagaaa
    23641 gaggtagctt gattccttct aaagtgctaa aatgagaagg agctttctaa ataatatttt
    23701 gtagcgaaca gtaatggact tttataattc atttggaggt acttgcatga caaaatcggt
    23761 tacggtaaag gatttaaagg aacgacttaa tttagagtta atttgttcgg aaacgggact
    23821 tgaacggcca atttcaacaa gtgacttatc tcggccgggg ctggaactta ctgggttttt
    23881 ctcttattat ccagaagatc gtgtgcaact ttttggcatg actgaaatat cgttttctga
    23941 aggaatggaa cctgaagaac gtctcaaaag atataaacaa atgtgtacga agcggacgcc
    24001 tgcttttgtg atttctagaa atttagaagt gccgaaagaa ttagtagcag cagcgaaaga
    24061 agctgatatt ccggtattac gttcacgact taaaacgaca cgtttatctg tttatattac
    24121 gaattactta gaaagcagac ttgcgccagt tatttcgatg catggtgttc tagtggatat
    24181 atatggttta ggtgtgttga ttacggggag cagtggtgtt ggtaaaagtg aaacagcact
    24241 ggagcttgta aaacgcgggc atagacttgt agcagatgat aacgtagaaa ttcgtcaaga
    24301 ggatgaaatg acgttaattg gttcttctcc agcaattatt gaacatttac tcgagattcg
    24361 cgggttgggg attattaatg taatgacttt atttggagca ggagctgttc gttctagtaa
    24421 aaaaattact atcgttgtgc accttgaaaa ttgggatcct gataagcatt atgatcgtgt
    24481 cggattagac caagaaaaga caaaaatctt tgatatggat attccgaaaa ttacggtgcc
    24541 tgttcgaccg ggacgaaatt tatctgttat tattgaggta gcggcaatga atttccgatt
    24601 aaagaatatg gggtacaacg cggcagagca atttacacaa gacctgaata atttaatagg
    24661 tcataacagc agtatgaatg attaaataaa tagtgaaagc atctccgcag ccaaacttta
    24721 caaaaatgct tgtttggttg cggagttgtc tttttgaaag taggggaatt atgggtaatg
    24781 gtgttcagcc acttgatccg gtggcgattc aaattggtag tatatctgtg aaatggtacg
    24841 gagttattat tgcttcggct gttgtcatcg cgttacttct tgctttaagt gaagcaaaca
    24901 agcgcaaaat ggataaagaa attattgtgg atttgctgat atgggcaatt ccgatttcaa
    24961 ttattagtgc tcgaatttac tatgttattt ttgagtggga tttctataag aataatttag
    25021 gcgaaatagt gaaaatctgg cacggaggta ttgctattta tggcgcgcta attggtgcag
    25081 ttttaacggc aattattttc tcgcggatta agaaaatttc gttctggcaa cttgcggatg
    25141 tcgttgcgcc aagtttgatt attgcgcagg caatcgggcg ttggggaaac ttcatgaacc
    25201 aagaagctca tggtgcagaa acaacgcgtt cttttctgga aagccttcat ttaccagatt
    25261 ttattatcaa ccagatgtac atagatggtg cttattatca accgactttc ttatatgaga
    25321 gtttatggaa tgtgcttgga tttattgttc tattaattat tcgtcgcaca aaaattcgtc
    25381 gtggggagtt gttcctcggc tatgtaattt ggtattcatt tggaagattc tttattgaag
    25441 gaatgcggac agatagctta atgtgggggg actttagagt ttcgcaagtg ctatctttac
    25501 ttcttattgt tttgtctatt ggtattatta tttatcgtcg tatgaaaatg aatccaccat
    25561 attatatgga agataaattt ggtaaagtag ttaaaaagaa ataaaaaagt tggagatttt
    25621 cgagtttgat taagaaagga agaaattatg actgggaaaa ttactacatt gttgtttgac
    25681 ttagatggta cgcttataaa tacgaatgaa ttgattatca aaacatttca agtgacattt
    25741 caagaattca tgccggaccg ggtttttact agagaggaca ttttaccgtt tatcgggcct
    25801 tctttaatgg agactttccg ggaaataaat ccagcgcatg cagatgagat gcgcgctttt
    25861 taccgagagt ataatttgaa gcatc
//
LOCUS       DASEAA010000024        25298 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.024, whole genome shotgun sequence.
ACCESSION   DASEAA010000024 DASEAA010000000
VERSION     DASEAA010000024.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 25298)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 25298)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..25298
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.024"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..332
                     /locus_tag="U0342_000827"
     CDS             <1..332
                     /locus_tag="U0342_000827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Rgg/GadR/MutR family transcriptional regulator"
                     /protein_id="HEM2422185.1"
                     /translation="EISLHVNRATYLILDEEYELALHYIELSIKIAKHNHYYLQFCMA
                     IAKKGIVLYKLGQKQKGKHFMQRALRVAKVLEEERILNGIKNEIDYFLHDELQNLSLN
                     EFTKIDI"
     gene            complement(388..852)
                     /gene="smpB"
                     /locus_tag="U0342_000828"
     CDS             complement(388..852)
                     /gene="smpB"
                     /locus_tag="U0342_000828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SsrA-binding protein SmpB"
                     /protein_id="HEM2422186.1"
                     /translation="MPKGDGKLVAQNKKARHDYAIEETFEAGIVLQGTEIKSVRNARV
                     NLKDSYARIDKGEIFLHNMHISPYEQGNRYNHDPLRTRKLLLHKKQISRLIGETKESG
                     YSIVPLKMYIKDGYAKVLIGVARGKKKYDKRQDLKQKEAKRDIERAFKERQQ"
     gene            complement(868..3249)
                     /gene="rnr"
                     /locus_tag="U0342_000829"
     CDS             complement(868..3249)
                     /gene="rnr"
                     /locus_tag="U0342_000829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease R"
                     /protein_id="HEM2422187.1"
                     /translation="MEQKQMEEKIMNLLTSAPDKTFALEDLEIEIALNNADDFKLMVK
                     ALVKLEDSGTIVRSRKNRYALPEKMDLVKGTFRAHERGFGFVLPEEKEMDDIFIPPNE
                     VKDAMNGDLVFATITKRKGDNLAEGTIKKIVERKTTQIVGTYMEDLAGTPIVMPDDKR
                     LFGEVEIDLEDGLKPVDGHKVIVELTEYATGHARARGVVKSIIGHRNDPGVDILSIIH
                     KHGISIGFPEEVMEQVSKAPDVVDDSDIGNRRDLRDQMIITIDGADAKDLDDAVTVKQ
                     LPNGNWKLGVHIADVTHYVTEGSPLDVEAQERGTSVYLVDRVIPMLPHKLSNGICSLN
                     PQVDRFTMSCEMEIDEEGHVVNHEIFESIIKTTERMTYTDVNDILVEKDEALREKYAP
                     IVPMLEKMQDLAEILRRKREKRGAIDFDFKEARVVVDEDGHPEAVVMRERSAGEHLIE
                     EFMLAANETVAEHFHWMDVPFIYRIHEDPKEDKLARFFEFITNFGLIVKGTANDIHPA
                     ALQQVLEEVKGKPEEMVVSTVMLRSMQQAKYDTVSAGHFGLSTDFYTHFTSPIRRYPD
                     LIVHRLIREYLINGDVRPETLEKRAEELPEIAEHSSKMERRAVEAERETDELKKTEFM
                     VDKVGERFIGIISSVTNFGLFIELPTTIEGLVHVSAMKGDYFKFHQNQLAMIGERTGQ
                     IYRIGDEVEVEVTKVDVDAREIDFALRSEGKPGPVSDKQKRQREKPIDKTRNFKSNQK
                     KGRNKRRAGKSEDVKPKSERKEDEWHTKPKKKKKKKPFYQGVAKESPKKKKRR"
     gene            complement(3283..4029)
                     /locus_tag="U0342_000830"
     CDS             complement(3283..4029)
                     /locus_tag="U0342_000830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase"
                     /protein_id="HEM2422188.1"
                     /translation="MKITPPQPFLFEKGKRAVLLLHGFTGSSADVRILGRFLQENNYT
                     CYAPQYRGHGVSPDLLLKTGPNDWWEDVLEAYDHLKSLGYTEIAVAGLSLGGLFSLKL
                     GFSRPLKGIIAMSTPTRMDSSSPIIQGFLDYVRNYKKLEGKTPEQIDAEMVAYKDAPM
                     NTIAKLKDEINGVVAEIDMIYAPIMVVQGEKDDMVDVSGAQLIYDTVESTKKELHWFK
                     ESGHVITLDKERKEVNQAILTFLDSLDWQE"
     gene            complement(4285..4518)
                     /gene="secG"
                     /locus_tag="U0342_000831"
     CDS             complement(4285..4518)
                     /gene="secG"
                     /locus_tag="U0342_000831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecG"
                     /protein_id="HEM2422189.1"
                     /translation="MSTVLTVLLIIVSVLLITVIILQPGKSAGLSGAISGGAEQLFGK
                     QKARGLELILHRTTIVLSVVFFAILIALAYFVQ"
     gene            complement(4608..5351)
                     /locus_tag="U0342_000832"
     CDS             complement(4608..5351)
                     /locus_tag="U0342_000832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxylesterase"
                     /protein_id="HEM2422190.1"
                     /translation="MSADRSFTLKAGNRAVLLLHGFAGTTEDVRELGEILAENGYTVH
                     APNFRGHGDEPAIFLKTTPEMWYEDAVAGYRQLEKDGYNEIAIVGVAMGGVFALKMAE
                     SFSPKAIVPLCANVNRKMRYIPIENYLTKQLKKQGIVEQEADQMLKNYLPEIDVMTEA
                     RATFYKNVARDIEKIHVPTMIGQGCQDEEIDADNANYIFKHIHTNDKQLCFYAGSGHD
                     IVNDCEKDILEEDLIYFLDDLVWLEEKVV"
     gene            complement(5534..6253)
                     /locus_tag="U0342_000833"
     CDS             complement(5534..6253)
                     /locus_tag="U0342_000833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2422191.1"
                     /translation="MIAEINGINLFYQIIGKGEPILLIHGNGQNHRSLKRMIDDLSTN
                     HQVIAVDSRAHGKSEAGNTPLDFEVMALDMLSLLDYLKIDKYKVIGYSDGGIVALVMG
                     KLQPNRQIASVVIGTNYHVNQIRFLPDLFCRVAYGAAFLLAPFSRFFERMKRQLALTI
                     YHPHMSEADLQKISAPLLAVVGEYDLISSKDTKKMVHSVQHGEMVIVRNGLHYLPRQK
                     PKQLLQLIHSFFSNLSAEIHK"
     gene            complement(6386..6559)
                     /locus_tag="U0342_000834"
     CDS             complement(6386..6559)
                     /locus_tag="U0342_000834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422192.1"
                     /translation="MLMKVKNSQASKVLETPKIKDAVVHEKSHPLAEKHSVQKKIINA
                     DMPQQQFHRRLMK"
     gene            complement(6662..7954)
                     /gene="eno"
                     /locus_tag="U0342_000835"
     CDS             complement(6662..7954)
                     /gene="eno"
                     /locus_tag="U0342_000835"
                     /EC_number="4.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopyruvate hydratase"
                     /protein_id="HEM2422193.1"
                     /translation="MSIITEVYAREVLDSRGNPTVEVEVYTEAGAFGRALVPSGASTG
                     EYEAVELRDGDKARYLGKGVLKAVENVNDIIADKIIGFDVTDQIGIDKAMIELDGTPN
                     KGKLGANAILGVSLAAARAAADELGVHLYEYLGGVNGKVLPVPMMNILNGGEHADNNV
                     DVQEFMVMPVGAPNFKEALRMGAEILHALKAVLKGKGLNTGVGDEGGFAPNLKSNEEA
                     LETIMQAIKDAGYKPGEEVKLAMDAASSEFYNRETGKYELKGEGVTRTSEEMVTWYEE
                     MITKYPIISIEDGLDENDWDGFKLLTERIGDRVQLVGDDLFVTNTTKLKEGIEKGIAN
                     SILIKVNQIGTLTETLDAIEMAKRAGYTAVISHRSGETEDSTIADIAVATNAGQIKTG
                     APTRTDRVAKYNQLLRIEDNLADLAEYHGNETFYNLKK"
     gene            complement(8090..9622)
                     /locus_tag="U0342_000836"
     CDS             complement(8090..9622)
                     /locus_tag="U0342_000836"
                     /EC_number="5.4.2.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-bisphosphoglycerate-independent
                     phosphoglycerate mutase"
                     /protein_id="HEM2422194.1"
                     /translation="MSKSPVAIIILDGFGKRAETVGNAVAQANKPNFDRYWANFPHGE
                     LKAAGLDVGLPEGQMGNSEVGHTNIGAGRIVYQSLTRIDKAIEEGEFQENKALNNAFT
                     HTKENNSDLHLFGLLSDGGVHSHINHLVALLETAKDKGVKNVYIHAFLDGRDVAPQSS
                     LEYLETLQKAISDLNYGAIATVSGRFYAMDRDKRWERVEKAYKAIVNAEGEKFEDPIE
                     LVKASYANDKNDEFVVPAIITKDGKPVATVKDNDAVIFFNFRPDRAIQLSNAFTDKEW
                     DHFDRGANHPKNIKFVTMTLYNPSIDAEVAFEPIEMKNVIGEVLSNEGLSQLRIAETE
                     KYPHVTFFMNGGRNEEFPGENRILINSPKVETYDLQPEMSAYEVTDALVEDIKNDKHD
                     AIILNFANPDMVGHSGMLEPTIKAIEAVDENLGRVVDLILEKGGSAIIFADHGNSETM
                     STPEGKPHTAHTTVPVPVIVTKKGVTLREGGRLADVAPTMLDLLGVKKPAEMTGESLI
                     QK"
     gene            complement(9624..11615)
                     /locus_tag="U0342_000837"
                     /pseudo
     CDS             complement(9624..11615)
                     /locus_tag="U0342_000837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_004081072.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
     gene            complement(11750..12760)
                     /gene="gap"
                     /locus_tag="U0342_000838"
     CDS             complement(11750..12760)
                     /gene="gap"
                     /locus_tag="U0342_000838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glyceraldehyde-3-phosphate dehydrogenase"
                     /protein_id="HEM2422195.1"
                     /translation="MTVKVGINGFGRIGRLAFRRIQNVEGIEVVAINDLTDAKMLAHL
                     LKYDTTQGRFDGEVEVHDGFFNVNGKEVKVLANRNPEELPWGDLGVDIVLECTGFFTA
                     QDKAELHIKAGAKKVVISAPATGDMKTIVYNVNHETLDGTETVISGASCTTNCLAPMA
                     KVLEDKFGVVEGLMTTIHAYTGDQNTLDAPHPKGDFRRARAAAENIIPNTTGAAKAIG
                     EVLPTLKGKLDGAAQRVPVPTGSLTELVTVLDKKVTVDEVNAAMEAASDPETFGYTSD
                     QVVSSDIKGMTFGSLFDETQTKVLTVGDQQLVKTVAWYDNEMSYTAQLVRTLEYFAKI
                     AK"
     gene            complement(12793..13839)
                     /locus_tag="U0342_000839"
     CDS             complement(12793..13839)
                     /locus_tag="U0342_000839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM2422196.1"
                     /translation="MSDLINIQKKLLPDVLMIMQKRYQILRSIYFSEPVGRRTLAGML
                     GMSERVLRGEVEFLKAQGLVEIASSGMTVTKEGLVVFRDLENVMNQLSGLHSMEEQLA
                     KKLQIKKCLVVQGDSDDTPWVREEMGRVAVEQLDMALTEKRNIVAVMGGSTMATVAEM
                     MTTDFAKGRELLFVPGRGGIGEDLDNQANTICDKMATKTNTKHRVLYVPEQLGEEAYR
                     SLLKEPAIQEGLRLVQSANAIILGIGDALAMAKRRHTGEDVLEKIIRRKAVGEAFGYY
                     FDEQGEVVHKVPTFGLQFEDLAQIPHIIAVAGGTSKAKAIKSYMKSAPKNTILITDEG
                     AAKSLLKGSNTLLK"
     gene            complement(14280..15623)
                     /locus_tag="U0342_000840"
     CDS             complement(14280..15623)
                     /locus_tag="U0342_000840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase factor sigma-54"
                     /protein_id="HEM2422197.1"
                     /translation="MRLESNFVQKQQQKQSQKLNMTQQLSQSIAMLQFATADLVAFLE
                     DKALENPLIEVIPGSDFATDFSYSSRKSAGSSDDTDWLEQIADNKLTLADALKEQLHL
                     MDVTQTQKIIVLYLIESLNDNGYLQIDLKDVSAALLMDDSSVLEGLEILQSMEPAGVG
                     ARDARECILLQIERSPDAPYIAYDVIQKFFTEFAEKKWKKIAAEMDVSLQDIQEVSDY
                     IQTLNPKPGSEFESERVQYVVPDLILLQHEDEFAVSLAKQFLPQVRFQEAYYETMRAT
                     EEKDVAQFLREKAGEFDWIKKGIEQRENTLQRVGEAIVNHQKAYFLDNSAHLQPLTLK
                     EVAEELGVHESTVSRAVNGKYMETTNGVYELKRFFASGLQKKSSENENTGDISSTTIK
                     KLVQEFVAAEDKLKPLSDQKIVDMLAEKEIQVSRRAIAKYRLELNIPSSSKRKRF"
     gene            complement(15783..16709)
                     /locus_tag="U0342_000841"
     CDS             complement(15783..16709)
                     /locus_tag="U0342_000841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase"
                     /protein_id="HEM2422198.1"
                     /translation="MRVIDTHCDALYKLQAGKGKYTFQDAEELDVNFERLIEAKMLLQ
                     GFAIFLDEDIPVEHKWKKAVEQVNIFKQHVLHKGGIIHHVKKWCDLENLPEDKIGAML
                     TLEGIEPIGRDLDKLTQLLDGGVLSVGLTWNNANLAADGIMEERGAGLTRFGKDIIHL
                     LNERKVFTDVSHLSVKAFWETLEQAEFVIASHSNAKAICSHPRNLDDEQIKAMIEHDA
                     MIHVVFYPLFTTNNGVADTEDVIRHIDHICELGGLKNIGFGSDFDGIPDHVKGLEHVG
                     KYQSFLETLEKHYTKEEIEGFASRNFLNHLPK"
     gene            complement(16788..18950)
                     /locus_tag="U0342_000842"
     CDS             complement(16788..18950)
                     /locus_tag="U0342_000842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEM2422199.1"
                     /translation="MKDGFLSKIASGVGGKKGRFITLGIWIIAIIILQFFFPKAADYK
                     DDAAKDLPNSEPSVVAQKLIDDKFAGTDGVPALITWYRSTGLTTEDLVNIQKYSKELT
                     ENPVDYQKMAVPYDKMPPVALKQQVSKDGTTFIQTVIMKDSATSDQLTESFKQLESAA
                     KTTIGENPFAQKVSADDALVARTTGPAGISVDASGLFKDADVSLLIGTVLLVLVFLLV
                     IYRSPILALIPLIAVGFAYLVITPILGLLAKEGIITYGSQGLSIMTVLLFGAGTDYCL
                     FLISRFRSHLHTEKNRFQAFKEAFSGTAGAIALSGLTVMAALLLLLAAEYGSFHNFAV
                     PFSLAIFIMMISSLTLVPALLGIFGRVSFWPFVPRTLEMEETRAKKKGKTPKHHKENR
                     FWHKIGEMSAKHPVRILIITLIILIGCGIFTTQVKYTYDTLSTFPEDMPSREGFTLIS
                     DHFGAGMLAPMEVVVNSKESMKSSLENVDGVASVTGPERSKGYQKYTLILKDNPYSNE
                     AMDVVPKVRAAADKGNDVYIAGQTATQYDDRAVTEHDEKVIIPLVIALIAILLLCYLR
                     SITAMLYLVATVLLSFVGALGLGWVIIHYAMGVEAISGLIPLYAFVFIVALGEDYNIF
                     MISSIWKNSKKMPLRKAITEGVGQTGGVITSAGLILAGTFGVLTTLPIQLLVQFGLIT
                     AIGVLLDTFIVRPFLVPSITVLLGKWAFWPGKQHKMTK"
     gene            complement(19030..19638)
                     /locus_tag="U0342_000843"
     CDS             complement(19030..19638)
                     /locus_tag="U0342_000843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2422200.1"
                     /translation="MEKKRTRAEELGITRRKILNTARDLFMEKGYRAVSTREIAKIAN
                     ITQPALYHHFEDKESLYIEVVRELTQNIQVEMHPIMQVTKAKEEQLHDMLIMLIEEHP
                     TNILLMIHDILNEMKPENQFLLYKLWQKTYLEPFQLFFERLENAGELRDGVSAETAAR
                     YCLSTISPLFSGKGSFAQKQTTTEQIDELINLMMFGICKKEV"
     gene            complement(19655..20053)
                     /locus_tag="U0342_000844"
     CDS             complement(19655..20053)
                     /locus_tag="U0342_000844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422201.1"
                     /translation="MAASLKDRLEKEVRTYSADNNLTVQTIDFLYAGPHMRGRHSLIL
                     AFTEAGIFTFVFKLSDAEMHFLDGETVQQIALEKKKLVYRLYIRAVTEEGELEEGKYL
                     VSKRVLGRKWHKETLEKLINKNLPLLTATK"
     gene            20286..20621
                     /locus_tag="U0342_000845"
     CDS             20286..20621
                     /locus_tag="U0342_000845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422202.1"
                     /translation="MGELGNIETRNGRTSFFDGGLLQYIGWTILGTLVTICTIGICYP
                     WALCMVYGWKINHTVIEGRRLKFQGSAVGLFGHWIKWLFLTIITIGIYGFWVFIKLED
                     WKVKNTIFK"
     gene            complement(20678..20749)
                     /locus_tag="U0342_000846"
     tRNA            complement(20678..20749)
                     /locus_tag="U0342_000846"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(20714..20716),aa:Arg,seq:ccg)
     gene            complement(20869..22305)
                     /locus_tag="U0342_000847"
     CDS             complement(20869..22305)
                     /locus_tag="U0342_000847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lytic polysaccharide monooxygenase"
                     /protein_id="HEM2422203.1"
                     /translation="MKKMTKIGMFFAVFTLAVVLFQTTASAHGYISKPASRVYLANKG
                     INVGVGSAQYEPQSVEAPKGFPASGPADGSIAGGGKYSLLDAQTANRWAKVDIQSGPL
                     TVEWTLTAPHRTSSWQYFITKKGWDPNKPLTRASLEPLTTIEADGSVPNALTKQEINI
                     PDDRSGYYVILGVWNIADTGNAFYQVIDANIINSSVAPAVDNEAPTEPTNLAATTTAK
                     NVSLTWTVSTDNVGIKGYEILRDGVVLGESQTASYEDTAVESNTAYTYTVRAKDFAGN
                     KSTLSDSIDVTTKEAPAVDNEAPTAPKSLMSHGQTETTIALCWQASTDNVEVKNYEIY
                     RNNTKIATSTKTMFEDTKLASNKSYNYKVYAVDTSGNRSLVSNEITIKTKPLDPLNTW
                     KSDQIYHAGDQVYYNGVAYTAKWWTKGNTPDTSDVWQTASRDIQIWNAQKAYNGGDKV
                     TYNGKTYQAKWWVRGEKPDSSSIWTLLN"
     gene            22462..23058
                     /gene="clpP"
                     /locus_tag="U0342_000848"
     CDS             22462..23058
                     /gene="clpP"
                     /locus_tag="U0342_000848"
                     /EC_number="3.4.21.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp endopeptidase proteolytic
                     subunit ClpP"
                     /protein_id="HEM2422204.1"
                     /translation="MNLIPTVIEQTSRGERAYDIYSRLLKDRIIMLGSAIDDNVANSI
                     VSQLLFLDAQDPEKDIFLYINSPGGSISAGMAIYDTMNFVKADVQTIGMGMAASMGSF
                     LLTAGANGKRFALPNAEIMIHQPLGGAQGQATEIEIAARHILKIKERMNTIMAEKTGQ
                     PYEVIARDTDRDNFMTAQEAKDYGLIDDIIINKSGLKG"
     gene            complement(23107..24498)
                     /locus_tag="U0342_000849"
     CDS             complement(23107..24498)
                     /locus_tag="U0342_000849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2422205.1"
                     /translation="MTKVNSFFRKKSFHNPATDKHHLNKTLGAFDLTMLGVGAVVGGG
                     IFILPGQVASVIAGPGIIISFIIAGIACCLAALCYSEFASKLPVAGSAYTYSYHVFGE
                     GVAWILGWSLILEYGLAVAAIASGWSSYMKSLLAGFDLHIPTVISSAYDPSAGTYFDL
                     LAFVVVMVIGILLSFGIRESTRVNNIMVLVKIAVVVLFILVGAFYVKPDNWTPFLPFG
                     VQGVITGASTVFFAYIGFDAVSSAAEEVKNPQKNMPIGIISSLAICTLLYILLSAVLT
                     GVVPYTDLVDVSAPVAFALQAINQNWIAGLLSVGAIVGMTTVVLVMSYGGTRLLFAMG
                     RDGLLPKSFSKISKNDTPVRNTMIFATVMGLIASTVPMADLAQLINIGTLFAFAMVSI
                     GIFFLRRNPDLNQKGFRTPFYPVVPALSFLLCVYLMINLSKTTWIAFGIWFVIGILVY
                     TFYGRKHSALRVK"
     gene            24715..>25298
                     /locus_tag="U0342_000850"
     CDS             24715..>25298
                     /locus_tag="U0342_000850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin N-terminal domain-containing protein"
                     /protein_id="HEM2422206.1"
                     /translation="MRKVFMFLSTALLLAILSLSFTGLDLKAKAASDLYPLPAPIIDV
                     FPDDGLAKDMARNLNKDSVNDVIDQDDLDALTSLGFETHTITNDSMQLLERAMFNNVT
                     DVSIMEFGAKLTEFPDITTIPHLKTLFFADSPGRLTRNLSLPNYQNYPEMDTITMSGN
                     NLVGSIPDFTGMPALKQLYMSDMSITSDELPNFN"
BASE COUNT         7103 a         5307 c         4480 g         8408 t
ORIGIN      
        1 ttgagatttc acttcatgtt aatcgtgcta cttatttaat tttagacgaa gaatatgaac
       61 tagctttgca ctacattgaa ttatctataa aaatcgctaa gcataaccat tactacttac
      121 aattctgtat ggctattgcg aaaaaaggaa ttgtgctgta taagctcggc caaaaacaaa
      181 aaggtaaaca ctttatgcaa cgagcactta gagtggctaa agtgcttgaa gaagagcgta
      241 ttctaaatgg tatcaaaaat gaaatagatt attttcttca cgatgaactt caaaatctct
      301 ctttaaacga attcaccaaa atcgacatat aaaaaaagcc taaatctagc ttctccaact
      361 tttggttgaa tgactagatt taggctttta ttgttggcgc tctttaaaag cgcgttcgat
      421 atcacgtttt gcttcttttt gttttaagtc ttggcgttta tcgtatttct ttttacctcg
      481 agctacaccg atgagtactt ttgcgtagcc atctttaata tacattttta gcggaacaat
      541 cgaataaccg gactctttcg tttctccaat taaacggctg atttgcttct tatgtaaaag
      601 caatttgcgc gttcttagtg gatcatgatt gtagcggttc ccttgttcat aaggactaat
      661 atgcatattg tgtaagaaaa tttccccttt gtcgatacgt gcataggaat cttttaagtt
      721 tacccgtgcg tttcttacgg atttaatttc agtaccttgc aggacaatgc cagcctcaaa
      781 agtttcttca attgcgtaat cgtggcgcgc ttttttattt tgcgcaacta gcttaccatc
      841 accttttggc ataactcccc atcctttcta gcgacgtttt ttcttcttcg ggctttcttt
      901 tgctacacct tgataaaaag gttttttctt ctttttcttt ttaggttttg tatgccattc
      961 gtcttcttta cgttctgatt ttggtttcac gtcttctgat ttaccagctc tacgtttgtt
     1021 acgacctttt ttctggttac tcttgaaatt tcttgtttta tcaatcggtt tttcgcgttg
     1081 gcgtttttgt ttatcgctca ctggacctgg tttaccttca ctacgaagcg caaaatcgat
     1141 ttcacgagca tccacgtcta ctttagttac ttcgacttcc acttcatcac caatacgata
     1201 aatttggcct gtcctttcgc caatcatcgc taattgattt tggtggaatt tgaagtagtc
     1261 gcctttcatt gcgctcacat gaactaaacc ttcaatcgta gttggaagtt cgataaataa
     1321 gccaaaattg gttaccgaac taatgattcc gatgaaacgt tcgcccactt tgtcgaccat
     1381 aaattccgtt ttcttcagtt cgtctgtttc gcgctctgct tcaacggcac ggcgctccat
     1441 tttcgagctg tgttcagcaa tctcaggaag ctcctcagcg cgtttttcta acgtttccgg
     1501 acgaacatcc ccgttaatta aatactctct aatcaacctg tgaacaatca aatccgggta
     1561 ccgacgaatt ggtgacgtga aatgtgtata aaaatcagta gacaaaccaa agtgtccggc
     1621 gcttactgtg tcatacttcg cttgttgcat cgaacgcagc ataacagtcg aaacaaccat
     1681 ctcttccggt ttacctttta cttcttctag tacttgttgt aaagcagctg ggtgaatatc
     1741 gttagcagtc cccttcacaa tcaaaccaaa gttcgtaata aattcaaaga accgcgctaa
     1801 tttatcttct tttggatctt catggatacg gtaaataaat ggtacatcca tccagtggaa
     1861 atgctctgca actgtttcat tggcagcaag cataaattct tcaatcaaat gctctcccgc
     1921 tgaacgttcg cgcataacga ctgcttctgg atgaccgtct tcatcaacaa ctacacgtgc
     1981 ttctttaaag tcaaaatcaa tcgcgccacg tttttcacgt ttacgacgaa gtatttcggc
     2041 caaatcttgc atcttttcaa gcattggaac aattggcgca tatttttccc gtaaagcttc
     2101 gtccttttca actaaaatat catttacatc cgtatacgtc atacgttctg ttgttttaat
     2161 aatactttca aaaatttcgt gattaaccac atgaccttct tcatcgattt ccatttcaca
     2221 actcatagta aaacgatcta cttgtgggtt aagcgagcaa attccgttcg atagtttatg
     2281 tggcaacatc ggaattacgc ggtcaaccaa ataaacactc gttccacgtt cttgcgcttc
     2341 gacatcaagc ggcgagcctt ctgtcacata atgcgttaca tccgcaatat gaacgcctag
     2401 cttccagttg ccattcggta gttgcttaac agtaacagca tcatctaaat ccttagcgtc
     2461 tgccccgtca attgtaataa tcatttggtc acgaagatca cgacggttac caatatccga
     2521 atcatccacc acatccggcg ctttacttac ctgctccatt acttcttccg ggaacccgat
     2581 tgaaataccg tgtttatgaa taatcgataa aatatccact cctggatcat tacggtgacc
     2641 gatgattgat ttaacaaccc ctcttgcacg cgcatgccca gttgcatatt ccgtcaattc
     2701 aacaataact ttatgcccat caactggttt taagccgtct tctaaatcaa tttccacttc
     2761 accaaaaagt cgcttgtcat ctggcatcac aattggagta ccagctaagt cttccatata
     2821 agttccgacg atttgtgttg tcttccgttc gacaattttc ttaatcgtac cttctgccaa
     2881 attatcgcct ttacgtttcg tgattgttgc aaaaactaaa tcaccgttca ttgcatcttt
     2941 aacttcattt ggcgggataa aaatatcgtc catttctttc tcttctggga gaacaaagcc
     3001 aaaacctcgt tcatgtgcac gaaatgttcc ttttactaag tccatttttt ctggtaatgc
     3061 ataccgattc ttccttgagc ggacaatagt tccggaatct tccagtttca ctaaagcttt
     3121 caccattaat ttaaagtcat ccgcattgtt taaagctatt tctatttcca aatcttcaag
     3181 cgcaaatgtt ttatcaggcg ctgaagttaa tagattcata attttttctt ccatttgttt
     3241 ttgttccact tctgtccctc ctctctctgt tttaaaaatt gtctattctt gccaatctaa
     3301 actatctaaa aatgttaaaa tggcttgatt tacttctttt cgttctttgt ctaatgtgat
     3361 gacgtgccca gattctttaa accagtgcaa ttctttcttc gttgactcta ctgtatcata
     3421 aattagctgt gctccgctca catcaaccat atcgtctttt tcaccttgga cgaccattat
     3481 tggcgcataa atcatatcta tttcagccac gacgccattt atctcgtcct ttagtttagc
     3541 gattgtgttc attggggcgt ctttataggc aaccatttca gcatcgattt gttcaggtgt
     3601 tttaccttct aattttttat aattacgcac ataatctaaa aagccttgaa ttattggtga
     3661 tgaactgtcc attcttgttg gagtactcat ggctataatt ccctttaacg gcctagaaaa
     3721 acctaatttt agtgaaaaaa gcccaccgag tgaaagtccc gccacagcta tttccgtgta
     3781 accaagtgat tttaggtgat cataggcttc aagaacatct tcccaccaat cgtttggtcc
     3841 cgtttttaac agtaggtcag gagatacacc gtggcctctg tattgaggtg catagcaagt
     3901 ataattgttt tcttgtaaaa acctacctaa tattcttaca tccgctgagc tacctgtgaa
     3961 accgtgcaag agtaacactg ctcttttgcc tttttcgaat aggaatggtt gtggtggtgt
     4021 tattttcata gtaaatatcg ctccttggtt ctttttggag gtttggttga tctgggttgg
     4081 atgttatttt tgttggagtt ctaggggatt ggctgtattt aataatttgt gctccccttt
     4141 ttgagttgtt cgtccacttt tttttatgga aacaacgctc cacttcgtta cgccttgtat
     4201 tggagttcta gggaagcgga atacgcttct ttagaactcc aataaaaaac cacctaaatt
     4261 ttcattcagg tggttaacat ctcgttactg tacaaaatat gccagtgcaa ttagtattgc
     4321 gaagaaaaca acggatagaa cgatggttgt acgatgtaga ataagttcta gtcctcttgc
     4381 tttttgctta ccgaataatt gctcagctcc accagagatg gcaccggata agccagcact
     4441 tttacctggt tgaagtatga taactgtaat taacagtact gatacgatga tgagtaagac
     4501 cgttaaaact gtactcattg ttctttcctc ctaaaaccgc ccaatttgac taagattaat
     4561 tttaccatat ttggtattat acgtaaaggt ttgtttctat acaatagtta aacaactttt
     4621 tcctctagcc aaactaaatc gtctaagaag taaattaagt cttcttctaa aatgtctttc
     4681 tcacagtcgt tcacgatgtc atgccctgac cctgcataga aacacaattg tttatcattt
     4741 gtatgaatgt gcttaaagat ataattggcg ttatctgcgt cgatttcttc atcttgacag
     4801 ccttggccaa tcatggttgg tacatgaatt ttttcaatgt ctcgcgctac gtttttgtag
     4861 aaagtagcac gtgcttccgt cattacgtct atttcaggaa ggtagttttt tagcatttga
     4921 tctgcttctt gttctactat accttgtttc tttaattgtt tagttaaata gttttcgatt
     4981 gggatatagc gcattttgcg gttgacgttg gcgcatagtg gaacaatcgc ttttggtgaa
     5041 aacgattctg ccattttaag cgcaaaaact ccgcccattg cgacaccgac aattgcaatt
     5101 tcattatatc cgtctttttc aagttgacga tatccagcca ccgcatcttc ataccacatt
     5161 tccggtgttg ttttcaagaa aatagcgggt tcatccccgt gacctctgaa gtttggtgca
     5221 tgcactgtgt atccattttc tgctagaatt tctccaagtt ctcttacgtc ttctgtagtc
     5281 cctgcaaagc catgcaagag caaaacagca cgatttcccg cttttaacgt aaagctccga
     5341 tccgcactca tttttacgca atcctcctaa tatcatcact tttataatcc actctattgt
     5401 agcccatctg aactaaataa gctacctttt gagttctgac caatagacca atattaacgc
     5461 tatccaagga acttgtcaaa cacttttttc acaaagctca aacgcgttgc taccaaaggc
     5521 ttttccggag gtttcatttg tgaatttctg cgcttaaatt agaaaagaaa ctatgaatta
     5581 attgtaacaa ttgtttcggt ttttgccttg gtaaataatg aagtccattt cttacaataa
     5641 ccatttcacc gtgttgaaca gaatgcacca ttttctttgt atctttggaa gatattaaat
     5701 catattcacc cacaacagct aaaagtggcg cgcttatttt ttgcaaatcc gcttctgaca
     5761 tatgtggatg ataaatcgtt aaagcaagtt gtcgtttcat ccgctcaaaa aagcgactaa
     5821 atggcgctaa aagaaatgca gccccgtagg cgacacgaca aaataaatct ggtaaaaatc
     5881 gtatttgatt tacatgatag tttgttccaa taacaacgga tgcgatttga cggttcggtt
     5941 gcaatttccc cattacgaga gcaacaatac cgccgtcgct atatccgata actttatatt
     6001 tatcaatttt caaataatcg agtaacgaaa gcatatctag cgccattact tcaaaatcaa
     6061 gcggtgtatt tcccgcttca cttttcccgt gtgcgcggct atctacggcg attacttgat
     6121 gattagtaga gaggtcatca atcatccgct ttaaagaacg atgattttga ccattcccgt
     6181 gaataagcaa gattggttcg cctttaccga ttatttgata aaacaagtta attccattga
     6241 tttctgcaat catatagcat ttctccttgc tgaaaacatt ttctaccctt attttacacc
     6301 tgattatact tgatttccta taaaaaagct tccattttca ttaaaatacg cctgattctt
     6361 ttaaaactag aatcaggcgc accgtttatt tcataagtct tcggtgaaac tgttgttggg
     6421 gcatatctgc gttaatgatt ttcttttgca cagaatgttt ttccgctaag gggtggcttt
     6481 tttcatgcac cacagcgtct ttgatttttg gagtttcgag cacttttgag gcctgactat
     6541 tttttacttt catcagcatt acctcctctt ccaaatcatt acccctctcg ctatttttaa
     6601 aacagaaaaa actccgcgaa aatgttactt ttcgcggagc ttagcgtttt attcaatcaa
     6661 cttatttttt taagttgtag aaagtttcgt taccatggta ttcagcaaga tcagccaaat
     6721 tgtcttcgat gcggagtaat tggttatatt ttgcaacacg gtcagtacga gtaggcgcac
     6781 cagttttgat ttgaccagcg tttgtagcta ctgcaatgtc agcgattgtg gaatcttctg
     6841 tttcaccaga acggtgagag ataactgcag tgtagccagc gcgtttagcc atttcaattg
     6901 catccaatgt ttcagtcaaa gtaccgattt ggttaacttt gattaggatg gagttagcga
     6961 tacctttttc gataccttct ttaagtttag ttgtgttagt tacaaataga tcgtcaccta
     7021 ctaattgaac gcggtcacca atacgttctg taagtagttt gaatccgtcc cagtcgtttt
     7081 cgtctaggcc atcttcaata gagatgattg ggtatttagt aatcatttct tcataccaag
     7141 ttaccatttc ttcagaagta cgagttacgc cttcaccttt aagttcgtat ttaccagttt
     7201 cgcggttata gaactcactt gatgcagcat ccatcgcaag tttaacttct tcgccaggtt
     7261 tgtaaccagc atctttaatt gcttgcatga ttgtttcaag agcttcttca ttggatttaa
     7321 ggtttggagc gaatccacct tcatcaccaa caccagtgtt taagccttta cctttaagta
     7381 cagctttaag tgcgtgtagg atttcagcac ccatacgtag agcttcttta aagtttggag
     7441 ctccaacagg cattaccata aattcttgaa cgtcgacatt gttatcagca tgttctccgc
     7501 cgttaaggat gttcatcatt ggaactggaa gaactttacc gttcactccg ccaagatatt
     7561 catataaatg tacgcctagt tcgtcagcag cagcacgagc agcagctaaa gaaacaccaa
     7621 gaatagcgtt agcacctaat ttacctttgt taggtgtacc atcaagttcg atcattgctt
     7681 tgtcaattcc gatttgatca gttacgtcaa aaccgataat tttgtcagca ataatgtcgt
     7741 ttacgttttc aacagctttt aaaacacctt ttccaaggta acgagctttg tcgccatcgc
     7801 gtaattctac agcttcgtat tcaccagttg aagcaccact tggaactaaa gcgcgaccaa
     7861 acgcaccagc ttcagtataa acttcaacct caacagttgg gttaccacgg gaatctaaga
     7921 cttcgcgagc ataaacttca gtaataatag acatttataa ttctctcctt tgttgggatt
     7981 aattgaatga aatgaacaaa aaattcactt catattcaaa gacccatccg tttttaaatt
     8041 cgtatttatt gtagctctgt ttgcaaaaaa actaaagtaa taactaaaat tatttttgaa
     8101 ttaaactttc acctgtcatt tcggcaggtt ttttaacgcc aagtaaatca agcatagttg
     8161 gcgcaacgtc agccagacga ccaccttcac gaagcgttac accttttttc gttacaatta
     8221 ctggaactgg aacagtagtg tgcgcagtgt gcggttttcc ttctggagta gacattgttt
     8281 cagagttacc atggtccgca aagataatag ctgatccacc tttttctaaa ataaggtcta
     8341 ctacacgacc aagattttca tctactgctt cgattgcctt aatcgttggc tcaagcatac
     8401 ctgagtgacc aaccatatct gggtttgcga agtttaagat gatcgcatcg tgtttgtcgt
     8461 ttttaatgtc ttcaacaagt gcatctgtta cttcatatgc gctcatttca ggttgcaaat
     8521 cgtatgtttc tacttttggc gaattgatta gaatccggtt ttcaccaggg aattcttcat
     8581 ttcgtccacc attcataaag aatgttacat gtggatattt ttctgtttca gcgatacgca
     8641 gttgcgataa gccttcatta gaaagtactt cgccgataac atttttcatt tcaattggct
     8701 caaaagcaac ttcagcatca atgcttgggt tgtaaagagt cattgtaacg aatttgatgt
     8761 ttttagggtg gttagccccg cggtcgaaat gatcccattc tttatcagtg aatgcattag
     8821 aaagttgaat cgcacggtca ggacggaaat tgaagaaaat aactgcatcg ttgtctttaa
     8881 ctgttgcaac aggtttgcca tctttagtaa tgatagctgg aacaacgaat tcatcatttt
     8941 tgtcattagc ataagaagct ttgacaagtt cgattggatc ttcaaatttt tcaccttcag
     9001 cgtttacgat tgctttgtat gctttttcaa cacgttccca gcgtttatca cgatccatcg
     9061 cgtagaaacg tccagaaaca gtagcaatcg cgccatagtt taagtcacta atagcttttt
     9121 gtagtgtttc taaatattct agtgaggatt gtggtgccac gtcacgtcca tcaaggaatg
     9181 catggatata aacgtttttc acgcctttat ctttcgcagt ttctaaaagt gcaacgaggt
     9241 gattaatgtg actatgcacg ccgccgtctg atagtaaacc gaaaagatgt aagtccgagt
     9301 tgttttcttt tgtatgagtg aaagcattgt ttagggcttt attctcttgg aattcgcctt
     9361 cttcaatagc tttgtcaata cgagttaagc tttggtagac aatacgtcca gctccgatgt
     9421 ttgtatggcc aacttcagag ttacccattt gaccttctgg aagaccaaca tcaaggccgg
     9481 cagctttaag ttccccgtga ggaaaattag cccaataacg gtcgaaattt ggtttgtttg
     9541 cttgagctac agcattacct actgtttctg cacgtttacc aaaaccatcg aggataataa
     9601 ttgctacagg tgatttactc attttatttt actgcctcca ataatgctaa gaacgatgct
     9661 ggttctaagc ttgctccacc tacaagagcg ccgtcaatgt cggactctgc aagataatca
     9721 gcaatgtttt caggttttac gctaccgccg tattgaatac gaactgcgtc tgctgctttt
     9781 tgagatacag cgtctgcaac ttctgcacga ataactgcac aagtttcgtt tgcatcagca
     9841 cttgtggaag atttcccagt accgattgcc caaattggtt cataagcaat aacagatttg
     9901 attacttgtt cttccgttaa tccagcaaga gctgcacgga tttgaccacg tacccaagta
     9961 tctgtttgac cagcttcacg ttgatctaat gtttcaccac agcaaatgat tggtgtcatg
    10021 ccgtgtttga agattgcatg tgcttttttg ttaatatctt cgtctgtttc gtggaaatac
    10081 tcacgacgtt cagagtgtcc gataataaca taagaaacac ctaaatcagc aagtgcaaac
    10141 gggctaattt cgccagtgaa agcaccttcg tcttcaaaat aacagttttg tgcagctacg
    10201 cgaagattag ttccttcagt aagacgaact aattcttgta aaaatagcgc cggtgcagca
    10261 actactgatt caacagcatc gcttgatggc acgttatttt ttacgtcttc tgcaaattgt
    10321 cctgcttttg cagcagtttt gttcattttc cagttaccag caataattgg tttacgcatt
    10381 tggataaaca tcctctcgat attaaaaatt atttttggtt cagcttattt gtcgctaata
    10441 gaagcaacgc caggaagctc tttaccttca agatattcta atgatgcacc gccaccagtg
    10501 gaaatatgtg tgaatttgtc agcaaaacct aagtccatag ctgctgctgc ggaatcccca
    10561 ccaccgatga ttgttgttgc atccgttaag tttgcaatag cttcacaaac gccaattgta
    10621 cctttagcaa agttgctaag ttcgaatacg cccattggac cattccatac aactgtttta
    10681 gcgccttgaa gttcttttgt aaataagtca attgtagctt gaccaatatc tagtcccatt
    10741 tcatcagctg gaatgctatc tgcactcact gtatggaaag gagcatcgtt actgaattct
    10801 ttagatacaa ctgcatcaac tggcaatact aatttatcgc cagctttttc aagtaagcct
    10861 ttagcaagtt caactttatc tgcttctaaa agagatttac caatttcttg accttgagct
    10921 gccatgaaag tgaaagtcat tccgccgccg acaagaactt tgtctgcttt tgtaagtaag
    10981 ttttcgataa caccgatttt gtcagaaact tttgcgccac ctaggattgc tactagtgga
    11041 cgtgctggat tatcaactac accgccgatg aatttaattt ctttttccat caaaaatccg
    11101 gccgctgatt ctaagttaga agcgattcca acgttagacg cgtgcgcacg gtgagcagta
    11161 ccgaaagcgt catttacgaa aacgtcgcca aggctagccc agtattttcc aagttctgga
    11221 tcatttttgc tttctttttt accatcaata tcttcaaaac gtgtattttc aaaaagaagt
    11281 acttcgccgt cttttaactc atcaattgct ttttcaagtt ctggaccacg agtagttgga
    11341 acgaatttca cttcttttcc aagtaattcg cttaaacgag cggctactgg acgaagagat
    11401 tttccttctt tatcttcttc tgtttttact tttccaaggt gagaaaatag aattgcttta
    11461 ccgttttgtt ctaagatgta ctcaattgtt ggaagtgcag caacaatacg gttgtcgtta
    11521 gtgattttgc cgtctttcat tggcacgtta aagtcaacac gaactaaaac ttttttgtct
    11581 tttaaatcta aatcagttac aactttttta gccatttaga gttcctccat taattttaaa
    11641 ggattggggt cgcccccgtt atttcagaaa ataagcggaa acaatagtgt ctccgcttat
    11701 tcttgttatt gctgatgtga ctagcacttc agtaaaatta atctgctaat tatttagcga
    11761 tttttgcaaa gtattctaaa gtacgtacta attgagcagt gtagctcatt tcgttatcgt
    11821 accaagctac agttttaact aattgttgat cgccaactgt aagaactttt gtttgagttt
    11881 cgtcaaataa tgaaccgaaa gtcatacctt tgatgtcaga agaaacaact tggtcactag
    11941 tgtaaccgaa tgtttctgga tcagaagctg cttccatagc tgcatttact tcatcaacag
    12001 taactttttt gtcaagaact gttactaatt cagtaaggga accagttgga actggaacac
    12061 gttgagcagc tccgtctaat ttacctttaa gtgttggtaa tacttcaccg atagctttag
    12121 cagcaccagt tgtattaggg ataatatttt cggcagcagc acgtgcacga cggaagtcac
    12181 cttttggatg tggagcatct aatgtatttt ggtcaccagt gtaagcgtga attgtagtca
    12241 ttagaccttc aacaacacca aatttgtctt ctaaaacttt agccatagga gctaaacagt
    12301 tagtagtaca gcttgcgcca gagataactg tttcagttcc gtctaatgtt tcatggttta
    12361 cattgtaaac gattgttttc atgtcgccag ttgctggagc ggagataaca acttttttag
    12421 cgccagcttt aatgtgtaat tcagctttgt cttgcgctgt gaagaaacca gtacattcta
    12481 aaacgatgtc tactcctagg tcaccccatg gaagttcttc tgggttacgg ttagctaata
    12541 ctttaacttc tttaccgttt acgttgaaga aaccatcatg tacttctact tcaccgtcaa
    12601 aacggccttg agttgtatca tattttaaca ggtgagctaa cattttagcg tctgttaagt
    12661 cattgattgc aacaacttca attccttcca cattttgaat acgacggaat gctagacgtc
    12721 cgatacgtcc aaaaccatta ataccaactt taactgtcat aagtcaattt cctccttgaa
    12781 aatagtgttt ttttatttca aaagggtatt actccctttt aaaagcgatt ttgctgctcc
    12841 ttcatccgtg attaaaatcg tattttttgg agcacttttc atatacgatt tgattgcttt
    12901 ggctttcgat gtaccgcctg caacagcgat aatgtgcggg atttgcgcta agtcttcgaa
    12961 ttgaagaccg aatgtaggga ccttatgtac aacctcgcct tgttcatcaa aataataacc
    13021 aaatgcttca cctacagctt tacgacggat gattttttca agtacatctt cgccggtatg
    13081 tctgcgtttc gccatcgcga gcgcatcacc tatgcctaaa ataatagcat ttgcagattg
    13141 tactaatcgt aagccttctt gaattgccgg ttctttcagt aaagaacgat aggcttcttc
    13201 gcctaattgc tccggaacat agagaacgcg gtgttttgtg tttgtctttg ttgccatctt
    13261 atcacaaatt gtattcgctt gattgtcaag gtcttcacca atacctccac gaccgggaac
    13321 gaaaagtagt tctctgcctt ttgcgaaatc agttgtcatc atttcggcaa cagtagccat
    13381 tgtagagccg cccataactg cgacgatgtt tcttttttcg gtgagcgcca tgtctaattg
    13441 ttcaaccgcc acacgtccca tttcttcgcg gacccatgga gtatcatcgc tatcaccttg
    13501 caccaccaag cattttttga tttgcaattt cttcgctaat tgttcttcca ttgaatgtaa
    13561 ccctgaaagc tgattcatga cattttccaa atcgcgaaaa acgaccaagc cttctttagt
    13621 aacggtcatt ccggaagaag caatttctac taaaccttgt gctttcaaaa attctacttc
    13681 gccgcgcagg acgcgttcac tcatgcctag cattccggca agtgtccgtc tcccaactgg
    13741 ttcagaaaaa taaatcgagc gtaggatttg gtagcgtttt tgcataatca tcaaaacgtc
    13801 gggcaataac tttttctgaa tgttaattaa gtctgacatt tttaattgct cctcatcttt
    13861 ggacgcttaa cgacccactt agtcatctga cgtcccgtta gaactaaaaa aagtagagat
    13921 agaggttttt acaactttca agactattaa actagctact tcagcttgtt aacaaagtgt
    13981 ctctcaatgt gatttttacc ccttctcttt ctgcttacgc tggtgaatct tttttatgtt
    14041 ctttaactac cctacgttcc ctattctaac agtcttggca caaatcttca agtgttaagt
    14101 gggacattta tgaaatattc acctgaaatt tacaattaaa tcttaaactg caaacttcta
    14161 aataggctat actagttgtt ttccacctct tcaaaaaacg aaacatgctc ttagttattt
    14221 ttttgtttta aaaagacgtt ttttgtccca cacacggctc gtgaggcaaa aaacgtcttt
    14281 taaaatcttt ttcttttaga ggaagaagga atatttaatt ctaaacgata ctttgcgata
    14341 gctcttcttg aaacttgaat ttctttttct gcgagcatat ctactatctt ttgatcggag
    14401 agtggtttta atttatcttc tgctgctaca aattcttgta ctagcttttt gatagttgta
    14461 cttgaaatat cacctgtgtt ttcgttctcg gaagatttct tttgtaaacc ggatgcaaag
    14521 aagcgtttta attcgtacac accattcgtt gtttccatgt attttccatt caccgcacgg
    14581 ctcacggttg attcatgtac accaagctct tccgctactt cttttaaggt taatggttgt
    14641 aaatgcgcgg aattatctag gaaataagct ttctgatgat tgacaatcgc ctctccaact
    14701 ctttgcaagg tgttttcgcg ttgttcgatg ccttttttta tccaatcaaa ttcgccggct
    14761 ttttcgcgta gaaattgggc gacgtctttt tcttcggttg ctcgcatcgt ttcgtagtat
    14821 gcttcttgga aacgcacttg tggcagaaat tgttttgcta gtgaaacagc aaattcatct
    14881 tcgtgttgga gtaaaattaa atccgggaca acatattgaa cgcgttcaga ctcaaattca
    14941 gaacccggct ttggatttaa ggtttgaatg tagtcggaaa cttcttgaat gtcttgcaag
    15001 ctaacatcca tttctgcagc gattttcttc cattttttct ctgcaaattc cgtgaagaat
    15061 ttttggataa cgtcataggc aatataagga gcatccggcg agcgttcgat ctgtagtaaa
    15121 atgcattcac gcgcatctct tgccccaacg ccagctggct ccatgctttg caagatttct
    15181 agaccttcta acacactaga atcatccatt aaaagcgccg cactgacatc tttcaaatct
    15241 atttgtaaat aaccattgtc atttaagctt tctattaaat ataagacgat aattttttgt
    15301 gtttgcgtta catccattaa atgtagctgt tcttttagcg catcggctaa cgtcagctta
    15361 ttgtcagcta tttgttctag ccaatctgta tcatcagaac ttccagcgct ttttcgacta
    15421 ctgtaagaaa agtctgttgc aaaatccgag cctggaatca cttcaattaa tgggttctcg
    15481 agtgctttat cttctaaaaa tgccactaaa tcagccgttg caaattgaag cattgcaata
    15541 gactgggaca attgttgcgt catatttaat ttctgcgact gcttttgttg ttgcttttgg
    15601 acgaaattag attctaaacg cacattaaaa cctccattaa aaattcgtct gatatacctt
    15661 ataccaaact aaattccatt tattgtcttc attataacat gccatttttc aaattacagc
    15721 agattctctt tgttctattt caaaaaaagt ccaagcactt cttacagtgc ttggactttc
    15781 gtttattttg gtaaatggtt taagaagttg cgcgatgcaa atccttctat ctcttcttta
    15841 gtgtagtgtt tttcgagtgt ttcaaggaag ctttgatatt taccgacgtg ttcgaggcct
    15901 ttgacatgat ctgggatacc atcaaaatct gaaccaaaac caatgttttt caatccgcca
    15961 agctcgcata tatgatcaat atgacgaata acatcctctg tatcagccac accattattt
    16021 gttgtgaaaa gtggatagaa gactacatga atcatcgcat catgctcgat catcgctttg
    16081 atttgttcat catctaagtt tctagggtga gaacaaattg ctttggcatt tgaatgacta
    16141 gcaatcacaa attcagcctg ttccaacgtt tcccaaaaag cttttacact caagtgagaa
    16201 acatccgtga atacttttct ttcatttaaa agatggataa tgtcttttcc gaagcgggtt
    16261 agtcctgcgc cacgttcttc cataatgcca tccgctgcca aattggcgtt gttccacgtt
    16321 agtccgacag ataatacgcc accatcaagt aattgcgtta atttatctaa atcacgtcca
    16381 attggttcaa tgccttctaa cgtcaacatc gcgccaattt tatcttcagg tagattttct
    16441 aaatcacacc attttttcac atgatgaatg attccacctt tgtgcagtac gtgttgttta
    16501 aaaatattaa cttgttcaac cgctttcttc catttatgtt caacagggat atcttcatca
    16561 agaaaaatag cgaatccttg tagtaacatt ttagcctcta taagccgttc aaaattcaca
    16621 tcaagttctt ctgcatcttg gaaagtgtat tttccttttc cagcctgtag cttgtaaagc
    16681 gcatcacagt gggtatcaat tactctcatt ttctgtcgtt cctcctttta gatacatcta
    16741 ttatatactt ttcagaggaa tagacaagag atttttcaaa gtcgttttca ttttgtcatc
    16801 ttatgctgtt tacctggcca gaacgcccat tttccaagga gcacagtaat tgatggaact
    16861 aggaacgggc ggacgatgaa ggtatcgagt aggacaccaa ttgccgtaat taagccaaat
    16921 tgtactaaga gctgaattgg cagtgtagtt aggactccga aagttcctgc taaaattaaa
    16981 ccagcagacg tgataacccc gccagtttgg ccaacacctt ctgtaatcgc ttttctaagt
    17041 ggcattttct tgctgttttt ccaaatacta gaaatcataa agatattgta atcttccccg
    17101 agtgcgacga tgaaaacaaa ggcatagaga ggaattaagc cagaaatcgc ctctactccc
    17161 atcgcgtaat gaatgatgac ccaaccaagg ccgagcgctc caacgaagga caagagaact
    17221 gtagcgacta agtaaagcat tgctgtaatc gagcgcaagt agcataaaag taaaatcgca
    17281 atcaaagcga taacaagcgg aataatcact ttttcatcgt gctctgtcac cgcgcgatca
    17341 tcatattgtg tcgcagtttg tcccgcaata tatacgtcat ttcctttgtc ggctgcggca
    17401 cgtacttttg gaacgacatc cattgcttca ttgctataag ggttatcttt taaaataagt
    17461 gtatattttt gataaccttt gcttcgttct ggaccagtca ctgaagccac tccatccaca
    17521 ttttcaagcg aactcttcat tgattctttg gagtttacca ctacttccat tggcgcaagc
    17581 ataccggcac caaaatgatc actaattaag gtaaatcctt cccgagatgg catatcttct
    17641 gggaacgttg aaagtgtgtc atacgtgtat ttcacctgag ttgtaaaaat cccacatcca
    17701 attaaaataa tcaatgtgat aattaaaatt cgtacaggat gtttcgcaga catttcacca
    17761 attttatgcc aaaaacggtt ttctttgtgg tgttttggtg ttttgccttt tttcttcgcg
    17821 cgtgtttctt ccatttctag ggttcttggg acaaatggcc agaatgacac acgaccgaat
    17881 atgcctagaa gtgctgggac aagtgttagc gaggaaatca tcataatgaa aatcgctaaa
    17941 ctaaatggta cggcgaaatt gtggaatgaa ccatattctg ctgctaataa tagaagtagt
    18001 gcggccatta cggtcaatcc actaagtgca attgcgccgg ctgttccgct aaatgcttct
    18061 ttaaatgctt ggaatctgtt tttctctgtg tgcagatggc tgcggaatct ggatattaag
    18121 aataaacaat aatccgttcc ggcgccaaat agtaatacgg tcattatcga gagcccttgt
    18181 gagccatatg tgataatacc ttctttcgcg agtaacccaa gaatcggcgt aattactaag
    18241 taggcaaaac cgactgcaat caaaggaatt aacgctaaaa ttggcgaacg ataaattact
    18301 agtaaaaaga ctaaaacaag tagtactgtt ccgattagca gcgaaacgtc cgcatcttta
    18361 aatagtccac tcgcatccac gctaatacca gccggtccag ttgtccgagc aacaagcgca
    18421 tcatcagcag atactttctg tgcaaatgga ttttctccaa tggttgtttt agccgctgat
    18481 tcaagttgct tgaagctctc tgttagttga tctgaagtcg cactgtcttt cataataacg
    18541 gtttggataa aagtagttcc gtctttagaa acttgttgtt tgagcgccac gggtggcatt
    18601 ttatcgtaag gaaccgccat tttttgatag tctaccgggt tttcggtcaa ttctttgctg
    18661 tatttttgaa tattaactaa gtcttcggtt gttaaaccag ttgaacgata ccaagtgata
    18721 agcgctggta ccccgtccgt tccagcaaat ttgtcgtcaa tgagtttttg ggcgacaaca
    18781 gaaggctctg aattcggtaa atctttcgca gcgtcatctt tgtaatcagc tgcttttgga
    18841 aagaaaaact gtaaaataat aattgcgata atccaaatac ctaatgttat aaaccggcct
    18901 ttcttgccac caaccccact ggcaatttta cttaaaaatc catctttcat tataaatccc
    18961 cctttagttt gcttattttt ttcgtttatc attcgataag tgaaacacca aaaaaagaag
    19021 cacgctaaat tatacctctt ttttacatat accaaacatc attaagttga ttaattcatc
    19081 aatttgttct gtagtcgttt gcttttgcgc aaagctgcct ttcccagaaa aaagagggct
    19141 aatagtggac aaacagtatc tcgcagcagt ctcagcactg acaccatcac gcaattcgcc
    19201 agcattttct agacgctcaa aaaatagttg aaatggttcc aaataggttt tttgccataa
    19261 tttataaagt aaaaattgat tttctggttt catttcatta agaatatcgt gaatcattaa
    19321 tagaatattg gttggatgtt cctcaattaa cataattaac atatcatgta attgttcttc
    19381 ttttgctttg gtcacttgca taattggatg catttccact tggatatttt gcgtcaattc
    19441 acgaaccact tcaatatata gggattcttt atcttcaaag tggtgatata gtgccggttg
    19501 ggtaatgttg gcaattttag ctatttctct tgttgaaact gcccggtaac ccttttccat
    19561 aaataaatca cgtgctgtat tcaaaatttt tcttctagtt attcctaatt cttctgcccg
    19621 agtccgcttc ttttccatca tcaccccacc tttcttattt tgttgcagtt agtaatggaa
    19681 ggtttttatt aatgagcttt tctagtgttt ctttatgcca tttacgacct agaacacgct
    19741 tactaacaag atattttcct tcctccagct cgccttcttc ggtcactgca cgaatatata
    19801 accgataaac taatttcttt ttctcaagcg caatttgctg aaccgtttcc ccatccaaaa
    19861 agtgcatttc cgcatcactt aatttaaata caaatgtaaa aattcccgct tccgtgaacg
    19921 cgagaataag cgaatgtctc cctcgcatat ggggccctgc atataaaaaa tcaatcgttt
    19981 gaacggtcaa attattgtca gcactatatg ttcttacttc tttttctaat cggtctttca
    20041 aactagcagc caaaataagc gcctcccttg ctgatttata ttttaccaga aaatggcggg
    20101 ttgaagtagg gaaagttttt tgatacttaa aaaggattaa attatttccc ttcataattc
    20161 ataaaaaagt caaatcaagt attctcttct tgattcattc atgttaatat caatattagt
    20221 gtttattaag cgggtataaa cgttctaacg attatataaa taataaaggg aagttggttt
    20281 gcaaaatggg agaattaggt aatatcgaaa cacgaaacgg gagaacatca ttttttgacg
    20341 gaggtttact gcaatatatt ggttggacaa ttcttggcac tttggtgacg atttgtacga
    20401 ttggtatttg ctatccatgg gctttatgta tggtttatgg ctggaaaatc aatcatacag
    20461 ttattgaagg aagacgcttg aaattccaag gttctgcggt tggacttttt ggtcactgga
    20521 ttaaatggct cttcctaaca atcattacta tcggaattta tggtttctgg gttttcatta
    20581 aactagaaga ttggaaagta aaaaatacga tttttaaata aaatgaaaaa acatcttaca
    20641 acatggcttt tgccagatgt gggatgtttt tttagtatgc cctcggaggg aatcgaaccc
    20701 ccattttaag aaccggaatc ttacgtgcta tccgttgcac cacgagggct atatgtaggc
    20761 cagaaatgct taccgtacga ataataatta tagcgaaatt cgtagtgttt tacaagtttt
    20821 attttaaatg aagaagccag cgcctccaaa gatttgctgg ctcaagtatt aatttaataa
    20881 tgtccaaatt gatgaactgt caggcttctc gcctcgtacc caccatttcg cttggtatgt
    20941 ttttccgtta tacgtaactt tatctccgcc attataggct ttttgagcat tccagatttg
    21001 gatatctcta cttgctgttt gccaaacatc acttgtatct ggagtgttcc cttttgtcca
    21061 ccatttcgct gtataagcta ctccgttata gtaaacttgg tcacctgcat ggtaaatttg
    21121 gtccgatttc caggtgttca gtggatctag cggttttgtt ttaatagtga tttcattact
    21181 tactaatgaa cgattgccag atgtatctac tgcatacact ttataattat agcttttatt
    21241 gctggctaat tttgtatctt caaacatggt tttcgtggat gttgcaattt ttgtattgtt
    21301 acgataaatt tcataatttt tcacttctac attatctgtg gaggcttgcc aacaaagagc
    21361 aatagttgtc tccgtttgtc catgagacat taaacttttt ggtgcagttg gtgcttcatt
    21421 atctactgct ggggcttctt ttgtcgtcac atcaatactg tcgcttaatg tagatttgtt
    21481 tccggcgaaa tcttttgctc gaacagtgta agtgtatgcg gtatttgatt ctacagctgt
    21541 atcctcataa gaagctgttt gactttctcc gagtactacg ccatcacgta aaatttcata
    21601 accttttatt cctacgttat cggtagaaac agtccaggtc aaacttacat tcttagcggt
    21661 agtagttgct gctaaattag tcggttctgt cggcgcttcg ttgtcaacag ctggtgctac
    21721 actagaatta ataatgtttg catcaattac ttgatagaat gcatttcctg tatcagcaat
    21781 gttccaaacg cccaaaataa cgtagtatcc tgaacgatca tctggaatat taatttcttg
    21841 ttttgttaaa gcatttggta cgcttccatc cgcttcaatc gttgtgagtg gctctaatga
    21901 tgctctagtt aacggtttat ttgggtccca acccttttta gtaataaaat attgccagct
    21961 gcttgttctg tgtggcgcag ttaatgtcca ttctacagtt aatgggcctg attgtatatc
    22021 tacttttgcc caacggtttg cagtttgagc gtctaacagt gaatatttcc caccgcccgc
    22081 aatactcccg tcagcaggtc cgcttgctgg aaatcctttt ggagcctcca cactttgtgg
    22141 ttcatattgt gctgatccaa ccccaacatt aatccctttg ttggctaaat atacacgact
    22201 tgctggtttt gatatgtatc catgagctga agcagttgtt tgaaaaagaa ctacagctaa
    22261 cgtaaacacc gcaaaaaaca ttccaatctt cgtcattttc ttcatgatgc accttccttt
    22321 cagcatagtt cattatacct ttttgttaaa ttttatagaa ataattcgcc tcagacttta
    22381 tcgtttgacc tagtttgacc attcgtgtat gatataaaca aagctaattt aaaattcaca
    22441 tttaacagga ggaatcttga tatgaactta attccaacag taatcgaaca aactagccgc
    22501 ggtgaacgtg catacgacat ttattcccgt ttattaaaag acagaattat tatgttagga
    22561 tctgcaattg atgataacgt ggcgaattcg atcgtttctc aattactctt cttagatgca
    22621 caagatcctg aaaaagatat tttcctatat atcaattcac caggtggaag tatttcagct
    22681 ggtatggcca tttacgatac aatgaatttc gttaaagcgg acgtacaaac tatcggcatg
    22741 ggtatggcag cttccatggg ctcattctta ctaacagctg gtgcaaatgg caaacggttt
    22801 gccttgccaa acgctgaaat tatgattcac caaccacttg gtggcgctca aggtcaagcg
    22861 actgaaatcg aaatcgctgc tcgccacatt ttaaaaatca aagaacgtat gaatacgatt
    22921 atggctgaga aaactggtca accgtatgaa gtcattgctc gtgatacaga tcgtgataat
    22981 ttcatgactg cacaagaagc aaaagattac ggcttaattg atgatatcat cattaacaaa
    23041 tctggcttaa aaggctaata aaaaaaagag gttttgcaca aaatgcaaaa cctctttttt
    23101 tatactttat tttacacgaa gcgctgaatg ttttcttccg tagaatgtat acactagtat
    23161 tcctatcaca aaccaaatac cgaatgcaat ccatgttgtt ttagataagt taatcattaa
    23221 atatacacaa agcaaaaagg aaagtgctgg tactactgga taaaatggcg ttctaaatcc
    23281 tttttgattc aagtctggat ttctccgtaa aaagaaaatc ccaatagaaa ccatcgcaaa
    23341 agcaaacaac gtaccaatat taattaattg tgctaaatct gccatcggta cagtagaagc
    23401 aattagtccc attactgtcg caaaaatcat cgtatttctc acaggtgtat catttttgct
    23461 tatttttgag aacgattttg gtaataatcc gtcacgtccc attgcaaata acaagcgtgt
    23521 accaccataa gacataacaa gtacaaccgt tgtcatccca acaatcgcac caactgacaa
    23581 caagcccgca atccagtttt gattaatagc ttgaagcgcg aaagcaactg gtgcactaac
    23641 atcaactaaa tccgtataag gaacaacccc tgtaagtact gcagaaagta aaatataaag
    23701 tagtgtacag attgccagtg aagaaataat tcctattggc atattttttt gtggattttt
    23761 cacttcttcc gcggcacttg atacagcatc aaagccgata taagcaaaga aaactgtgga
    23821 agctcctgta atgactcctt gtacaccaaa cggcaagaac ggcgtccaat tatcaggttt
    23881 cacatagaaa gctcctacta aaataaataa tacaaccact gcaattttta ctaacaccat
    23941 aatattattc actcgtgtgg attcacgaat accaaaacta agtaaaatac caattaccat
    24001 aactactaca aatgcaagta aatcaaaata ggttccggca ctcgggtcat aagctgaaga
    24061 aatcaccgtt ggaatatgta agtcaaatcc tgctagtaga ctcttcatat aagaagacca
    24121 accacttgcg attgcagcaa cagccagacc atattctaaa atcagtgacc accctaaaat
    24181 ccatgcaaca ccttccccga acacatggta actgtaagta tatgcgctac ctgcgactgg
    24241 taatttagaa gcaaattccg aataacataa tgccgccaaa cagcaagcaa ttcccgcaat
    24301 aataaaagaa ataataattc ctggtcccgc aatgacagaa gctacctgcc ctggaagaat
    24361 aaatatccct cccccaacaa ccgctccgac tccaagcatc gttaaatcaa acgctcctaa
    24421 cgttttgttc agatgatgtt tatctgtcgc tgggttatga aaactctttt ttctgaaaaa
    24481 agaattaact ttcgtcataa aaattcctcc ttcttaaatt ccaattttca gttaatttat
    24541 atgtgtattt ttaaactaac ttgaaaacta ttattcatag taccataaat agattgaaaa
    24601 atatacaaca tttgtagatt ttcgtacaaa aaatgttcat atatggtgta aatatttttt
    24661 cttggttttt tcgtgttatc ctttagacct ctaaaaaaga aaggactgaa tacattgaga
    24721 aaagttttca tgtttttaag cacagcttta ttattagcca ttttgtcact aagctttact
    24781 ggtttagatc tgaaggcaaa agctgcttct gatttatatc cactacccgc tccaattatt
    24841 gatgttttcc cagatgatgg attagccaaa gatatggcta gaaacttaaa caaagactct
    24901 gtgaatgatg ttattgatca agatgatttg gatgcattaa ctagtttagg gtttgaaaca
    24961 catacgatta cgaatgattc catgcaatta ctagagcgtg ccatgtttaa caatgtcaca
    25021 gatgtaagta ttatggaatt tggggctaaa ttaacggagt tccctgatat tactacaatt
    25081 ccacatttaa aaacgttatt ttttgctgat tcacctggaa gattaactag aaacttatcc
    25141 cttccaaact accaaaatta tcctgaaatg gataccatta caatgagcgg aaataattta
    25201 gtcggctcta tccctgactt taccgggatg cctgctttaa aacagcttta tatgtctgat
    25261 atgtcaatta caagcgatga acttcctaat tttaataa
//
LOCUS       DASEAA010000025        24301 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.025, whole genome shotgun sequence.
ACCESSION   DASEAA010000025 DASEAA010000000
VERSION     DASEAA010000025.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 24301)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 24301)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..24301
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.025"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            15..1340
                     /gene="pepC"
                     /locus_tag="U0342_000851"
     CDS             15..1340
                     /gene="pepC"
                     /locus_tag="U0342_000851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase C"
                     /protein_id="HEM2422207.1"
                     /translation="MHTELTFEQLESFSRKWRENPDKLVFQASIIKNGIKAATENPAS
                     KVSIQPVFSHEVATDKVSNQQQSGRCWMFAALNTFRHKLNGTLGLKDFELSQNYTNFW
                     DKLEKANYFLENIIETASEDEDSRLVSWLLDTPQQDGGQWDMLVSIIEKYGVVPKSAM
                     PETFQSSKSADLNHLLNERLRTDAVILRNAIAEKKDTADLKEEMLAEVYQLLVMTLGE
                     PPKVFDFEYRNKDNEFKQELQITPKDFYERYVDMDLKDYIPLINAPTKDKPFNQAFTV
                     EYLGNIVNGTPIKYLNVEMDVLKKAAADQIKDGETVWFGCDVGQLSERNTGIMDTDIF
                     LLNQTFGFKTAMTKAERLDYKHSMLTHAMVLTGVNIANGEVNRWKVENSWGEKIGNNG
                     YFVASDAWMDEFTFQVVVHKKYLSKELIESFNQKPIVLKPWDPMGSLAL"
     gene            complement(1337..1780)
                     /locus_tag="U0342_000852"
     CDS             complement(1337..1780)
                     /locus_tag="U0342_000852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF523 domain-containing protein"
                     /protein_id="HEM2422208.1"
                     /translation="MIAVSACLAGIACRYDGKDKEITKIKQMVERGEAIPFCPEVTGG
                     LPTPRNPAEIIGGDGKDVWLGHAKVIDNKGTDVTEEYKNGARLTLIKMQELGITQIIM
                     KEKSPSCGSCAIYDGTFSGKIKDGTGVAAALFQMNGIKIISEFAF"
     gene            complement(1861..2772)
                     /locus_tag="U0342_000853"
     CDS             complement(1861..2772)
                     /locus_tag="U0342_000853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pseudouridine-5'-phosphate glycosidase"
                     /protein_id="HEM2422209.1"
                     /translation="MKNYLSLSEEVKQAKAEGKAIVALESTIISHGMPYPQNVEMARD
                     VEQIIRDNGAVPATIALIDGKIKIGLSDEELELFAKSSNVAKVSRRDIGYLIATKQLG
                     ATTVAATMICAELAEIGIFVTGGIGGVHRGAETTMDVSADLEELAKTNVAVVCAGAKS
                     ILDLNLTMEYLETKGVPVIGYQTDVLPAFYTRSSDVELTLRADAPEVIAESLKAKWDL
                     QIKGGAVITNPIPEEFAMDEKVINDVIQTALKEAEENHIHGKDVTPFLLGKVKELTDG
                     KSLEANIELVKHNALIGTQIAVAYQNI"
     gene            complement(2769..3887)
                     /locus_tag="U0342_000854"
     CDS             complement(2769..3887)
                     /locus_tag="U0342_000854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2422210.1"
                     /translation="MENNKAKMNEKEEIIFNSIRKNPYISQQELADILDLSRPTVANL
                     ISGLIKKGRILGKAYILNEAKQIVCIGGANVDRKFYIKDKAQLATSNPVRSTQSAGGV
                     ARNVGENLGRLGKEVILLTACGTDSDWEAVKNASNTYMNLDYVTAFPSIATGSYTAVL
                     ENNGDLLVALADMDAYDHLTPDVLAKNEGLLSQASAIIADLNCPKETLEYLGSFAEIN
                     SIPLVLVPVSSPKMSHLPERLDHVTWLICNRDESETHLGMTIKNDEDWRLAAQKWLDL
                     GVKNVIVTNGSKGAVAANKGEGTIFEPAIVIENIVDVTGAGDAFCSAVIYAWLEGKAL
                     KEILRAGSVNAARTLESEYTVRQNLSTSQLQKDMEEFK"
     gene            complement(4020..4721)
                     /locus_tag="U0342_000855"
     CDS             complement(4020..4721)
                     /locus_tag="U0342_000855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM2422211.1"
                     /translation="MRLDKLLSHTGFGSRKEVKPLLKSGAVVVNGTIQKDSKTQVNPD
                     KDQVTVHGTPVVYQEFVYFMLHKPQNVVSATEDNVSETVIDLLAQEDTLTDPFPVGRL
                     DKDTEGLLIITNDGTLAHNLLSPKKHIDKTYYAKIDGDVTLADVEAFAAGIELDDGYT
                     CKPARLEIITPNEINVTIQEGKFHQVKRMFAARGKKVSYLKRISMGNLQLDESLGLGE
                     YRPLTESELAILQNK"
     gene            complement(4795..6117)
                     /locus_tag="U0342_000856"
     CDS             complement(4795..6117)
                     /locus_tag="U0342_000856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM2422212.1"
                     /translation="MTRKETIQFGAIIHGVGGTTDGWRHPDINPAASTDLDFYKTRAK
                     IAEQGLFSFVFIADGLFISEKSIPHFLNRFEPITILSALAESTENIGLVGTFSTSFTE
                     PFTLARQLSSLDHISGGRAGWNLVTSPQEGAARNHSKKNLPTHSDRYTIAAEHLKVVR
                     GLWSSWEEDAFTYNKETGEFFNPEKLHRLNHQGEYFQVEGPLNIGRSKQGEPVVFQAG
                     ASSTGRDFAAKNAEAIFTHSDSLEEAIEFYQDVKARAEKAGRNADEVRIFPGISPIVA
                     DTLEEAEAKYTEFASLIPIENAVTYLARYFDDYDLSQFDLDAPFPDLGDIGKNAFQST
                     TDRIKKEAKERHLTLRQVATEAATPKTPFIGTKEQVADLIDVWFQNDAADGFIIASDI
                     PGTFETFVEQVIPLLQSRGLYRNEYPATTLRGNLGLTIPQNKQVVETK"
     gene            complement(6114..6380)
                     /locus_tag="U0342_000857"
     CDS             complement(6114..6380)
                     /locus_tag="U0342_000857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutaredoxin family protein"
                     /protein_id="HEM2422213.1"
                     /translation="MANVVVWSKVGCHYCKDVKDYLTEQKIVFQDIDVTDHDYLREVL
                     QAKYGIRYVPVVEIGDIEKGTYQAVTEIGLEHLEKALFEKEEVK"
     gene            complement(6373..7368)
                     /locus_tag="U0342_000858"
     CDS             complement(6373..7368)
                     /locus_tag="U0342_000858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LLM class flavin-dependent oxidoreductase"
                     /protein_id="HEM2422214.1"
                     /translation="MTIRFSILDQSIINPGEKPSEALQNTVELAQLAEQLGYHRFWVA
                     EHHNSDEIAGAAPEVLLGYIAAKTSTIKLASGGIMLQHYSPYKVAEQFHVLENLAPGR
                     MSLGVGKAPGGFQPATDALQKDFVKPTRTFDAKLKELVDFVTHHSEVAIAAKPLPENK
                     PEIFLLGGSAASAKQAAKLGISFVFAYFINGEEAVLKEARELFEQYRINTKASFQLAP
                     IVVVAETKIAADRHIPERESIKVELADGRRVNVGSREQAESYVKDINQTYRFITQRIG
                     AITGTKQEVGAEIKRLSKEYNIQDFVVLTPVKSTEIKRYSYQLLSESIKEEVVHG"
     gene            complement(7365..8144)
                     /locus_tag="U0342_000859"
     CDS             complement(7365..8144)
                     /locus_tag="U0342_000859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2422215.1"
                     /translation="MITIKNIQKSFGENKVLKGIDLTVKKGEVVTILGPSGSGKTTFL
                     RCLNLLERPENGEISMHDQIINCKKPSKKEVLQLRKNTAMVFQQYNLFSHKTVIQNVM
                     EGLTVARKMPKKIAREIAERELTKVGLADKFSAYPSQLSGGQKQRVGIARALAINPDV
                     ILFDEPTAALDPELVGEVLEVMLEIARAGATMIVVTHEMEFAKRVADQVVFMDGGLIV
                     EQGTPDEVFNHTKEERTKRFLHRVSADYLYEIKEVKKERVI"
     gene            complement(8141..8848)
                     /locus_tag="U0342_000860"
     CDS             complement(8141..8848)
                     /locus_tag="U0342_000860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM2422216.1"
                     /translation="MPLDVPFIGTAVMAMLKTIPLTLAMTFFPILFGFIIAIGMTLIR
                     MYHVRFLEPIAKFYVSFFRSTPAILHIMLIYLGIPLLVDFLSKSFGLGISANKIPVVI
                     FVIIALSFTAGAYLTEILRSGIIAVDIGQMEAAYSVGYTHGQAIRKVLLPQAFMIALP
                     NFTNLCIGFLHTTSIAAIVAVPEITGMATIVASDNYAFLEAFIGAALIYWFLTILIEA
                     INYILEKNIAKYRGGTV"
     gene            complement(8862..9578)
                     /locus_tag="U0342_000861"
     CDS             complement(8862..9578)
                     /locus_tag="U0342_000861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter permease"
                     /protein_id="HEM2422217.1"
                     /translation="MDKAFDVKMIADFIPTLAGYLPITLYILALSLIFGFILGVLLSL
                     PRIYKIPVLDQLARVYISFFRGTPIMVQLFIVFYGIPALSSIVGIDLSQMDPLYAAIA
                     TYALSSAATIAEVIRAGVNSVDAGQAEAAYSIGLSSRQTFLRIILPQALYQALPNFGN
                     LVIGYLKDTSLAFSIGVMDMSGRGQTLITLSNHALEVYISLSIIYYLTAVLLEYSFKW
                     IEKRVKKENTRFTSIFDIEL"
     gene            complement(9600..10409)
                     /locus_tag="U0342_000862"
     CDS             complement(9600..10409)
                     /locus_tag="U0342_000862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2422218.1"
                     /translation="MKKKYGILALALTAALTLSACGGKEEPEAANQKVQTITVGTGTQ
                     FPNVCFLDENGKLTGYDVELVKEIDKRLPGYKFKFKTMDFSNLLVSLGAGKVDIVAHQ
                     MEKSKEREKKFLFNDVAYNNFPLQLTVLDSNNSINSTKDLAGKRVITSATSNGALVLK
                     KINEEQGNNFEIAYEGQGSNDTANQLKTGRADATISTPFAVDFQNKTSAIKEKVVGDV
                     LSNAKVYFMLGKDETKLSKDVDEALQSIIDDGTLKKLSEKWLGADYSKEQY"
     gene            complement(10426..10962)
                     /locus_tag="U0342_000863"
     CDS             complement(10426..10962)
                     /locus_tag="U0342_000863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422219.1"
                     /translation="MTEDIFRVATVDDAPEFLELLSSAFQSVKELGIDWPSTNADLAM
                     VTENIVNSSAFVLERNGKLISTITVRFPWESSSPPSKYPFVWWFATAPELAGQGIGDK
                     LLTYVEERVLRDTLKAPALTLGTSARKHPWLLDMYLRRGYEVYFEHEEDGDVGVMMRK
                     ILIPEKFDATLLGIPSWT"
     gene            complement(10978..11523)
                     /gene="ssuE"
                     /locus_tag="U0342_000864"
     CDS             complement(10978..11523)
                     /gene="ssuE"
                     /locus_tag="U0342_000864"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent FMN reductase"
                     /protein_id="HEM2422220.1"
                     /translation="MGKVTIIAGGIKTESRLTGLTQLAANELVTNGLEVNIIEVHKIN
                     AEALVTADFAHSDIQLANSEIESSSGVIIATPIFKAAYSGVLKAYLDLLPLKALKGKV
                     VLPLGLGGSNGHLLALQYALDPVLKELGAETILKGQFTVDKQIERFGDGLYEIESSAK
                     ERLDIALNQFISLLNQQSVEV"
     gene            11766..12665
                     /locus_tag="U0342_000865"
     CDS             11766..12665
                     /locus_tag="U0342_000865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2422221.1"
                     /translation="MEFRTIKTFYTVVNTGSFQRAAEVLNYSQPTISMRIKQLEQDLD
                     VQLFERGKTLKLTHAGRLFYERAGQLIAQYEVLDHTIFDLKNGNAGLIKVGISEPSAS
                     LVFPKILKTFLADFPKLMVNVSVDDANTCSQKLIDGEIDFAICGEPELILENFYFPFF
                     HDSLDLIVSESHPLASRTSVELRDLRDECFIFTPANCPIRIQIEQHLKRAIGSDYKKM
                     ELTSSMSHKYFVRENVGVSIFTSTAHSELLDGTVRIPIENLPISPPIGLLTNQKEKDF
                     DSTTKELIDRIIYYFDDKKRQLG"
     gene            complement(12691..14643)
                     /locus_tag="U0342_000866"
     CDS             complement(12691..14643)
                     /locus_tag="U0342_000866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sodium:proton antiporter"
                     /protein_id="HEM2422222.1"
                     /translation="MEIFELILLMLSAVFLSNVLSRFLPGIAVPLIQVILGIILAIPL
                     GDHTMDLNPELFLLLFMAPILFNDGASTDKKSLWKNRKAILSLSIGLVFVTVGVLGAF
                     IHYLIPAIPFAAAFALAAALAPTDAVAVGALAEKVRVPHKIMHILEGESLINDASGLV
                     SFQFAVLALVTGTFSFMSAGTSFLLLSLGGIALGAALSLLKIMLMRGLRQLGIENMTS
                     FMLMEILLPFLIFMVAEKVGVNGILAVVSGGMVHSFSYKGLNPEIAQLNLLSKNTWSV
                     IIFSLNGLVFILLGTQLPQILMTIWQDANIQKGMLFVYILGITFLLLGLRFLWILFFR
                     NYEENPKVDLVSRLKNTFLYTVAGVRGTITLVSALSLPFVLGNGNAFPERDLLIFIAA
                     GVIITTLLLANFTLPLFADKKDKIAADHTTDIVLLRDIVQQLQAYKTDENTVEMNKVL
                     NMYNNRIFSLMEHKEVNATEKELRRLTQEWQLENTRRLVFERKIDTGVGLSHMMRLGK
                     RLYVQTRAEKYRARMRYRQLLSHRFRDFRFVPLTFEERRKEIAKLQNENNLFVIQKLQ
                     ELDSNEYNPEIISLYLMNFERALGRGKNKKESNDEALQTTIDLASQIERETIQHYFEK
                     GTITRKEMKVYRDNLLAIEANMQLEF"
     gene            complement(14767..16365)
                     /locus_tag="U0342_000867"
     CDS             complement(14767..16365)
                     /locus_tag="U0342_000867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidohydrolase"
                     /protein_id="HEM2422223.1"
                     /translation="MKLWKNATFYQMTAEGDQVSAVLTENGHIYAVGEARELEKQHAA
                     NITETIDLEEKVVFPGFVDAHIHLLWYGQALERLNLNQTTTKKEALALIAERTKQLAS
                     DEWLFVEGYDENKWSDEQTLISLADLDEVSQTNPILVRRIDYHSVSINSALQAHIADF
                     SENGFDGGGEIVRDKAGNFTGILRDNATTMAIDSFPAATPSELSAWLKIAITDLWSKG
                     ITGAHSEDLHYFTGFTSTLAAFRNTIGANKMPFRAHLLVHHAELAAFSASNESFVSGD
                     AFLELGAMKIFYDGTVGSRTALMSAGYADNSDEKGLQIHSDQAFEDLVKAARKAGLPV
                     AIHILGDQAFANVIRTLRANPPREGQYDRLIHTPWLTEALIEEAAGLPVLFDIQPQFM
                     TSDLPWALEVLGENHPPLAFAWKTLLQAGFPLAGGSDAPIEVPNPFWGIHAAVTRTAN
                     ADLDGVEYWPEQALTVFEAIQLYTKGAAFAGYKTTTRGQIAPGFVADFTILAEDPFQM
                     KQADLRQVSAMMTVVDEQIVYQKK"
     gene            complement(16369..17610)
                     /locus_tag="U0342_000868"
     CDS             complement(16369..17610)
                     /locus_tag="U0342_000868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2422224.1"
                     /translation="MTKWLPKDLWIVIIGMVLLYTGLSFIWPFNMIYMTQELGMSTTD
                     ASLVLLINSGVGIVSSIIGGLIFDRFSGFISLTIGTIILVLSTASLCFFHGFPFFIWN
                     LWAVGIAMGMVFSGLYAAAGLTHPTGGRTGFNAIYVAQNIGVAIGPLLAGLLAKQGMS
                     HVYIGSFVFAIAFAGYFFFFFHKIDWKSERVSAETKHRKKGAKLEFPTKLALCSFILL
                     LLTYLLCQLPHVQWQSNLSTYMTEIKGVTSSEYGNLWSLNGALIVLGQLILIPVVNRF
                     KKYLLAQIYIGIFLFILSFVVAMNASVYSGFVLGMIFLTLGEMFAWPAIPTIAYQLAP
                     KGAAGLYQGLVNGMATAARMLAPFLGAIVVQNLGGIKALFIGAFILLGCALISITLQQ
                     ILQKKDQQDKAALKISVNQGE"
     gene            complement(17811..18422)
                     /locus_tag="U0342_000869"
     CDS             complement(17811..18422)
                     /locus_tag="U0342_000869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422225.1"
                     /translation="MEERFTTELMFTLTNNPRFQEVAELVYWNEEEIVHCPENNEYVY
                     AIDEGNVTQCAARNSSWGKGSILGFTREETKIHPLSKTVAWKIPLTYVKDILKSMGKI
                     KVADLTMIEKNFLDRNEIDCIQWFIQEMPLRLHTTSWKVALDFFRQEIMQVVPKEICA
                     FQVKELKQQHILYELGYYLEIDVLQFHNYLRDLAYKKVLQKIN"
     gene            complement(18612..19142)
                     /locus_tag="U0342_000870"
     CDS             complement(18612..19142)
                     /locus_tag="U0342_000870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HEM2422226.1"
                     /translation="MRKLYTYFVLILGVAMIGLGIYLMFNPSTSLQALTIFIGIILVL
                     NGINEVISYFGEQKYWSISKWIMFDGILSILIGGFAIFESNMAERVFIIIFAIWILAS
                     AILRILTAFAVKGLPGWTVLLIMGIIGLIIAVISLFTNMLVAIAVGIILGIFFIFQGI
                     TCLSLWWVIRKGESRK"
     gene            complement(19158..19889)
                     /locus_tag="U0342_000871"
     CDS             complement(19158..19889)
                     /locus_tag="U0342_000871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2422227.1"
                     /translation="MKLIRTKTYEEMSQEALEVVKQVINENDNPVINTTTGASFDGMF
                     EGLVKGINAGEIPIEKVFLMNLDEYVAKRDASFTVYTYMHQKFYDLINKMPKRVELLD
                     GSLADFTDEIARYKKILAENERDLQILGLGVNGHLGANEPGTPFDARLFLADSDESTI
                     KSTIMYNNLKEDEAPSQMLTLGLADMMDAKQILVTASGERKAEAVKGLLEGPIDESCP
                     ASILRNHPNVVFIIDEAAGSLLTNH"
     gene            complement(19933..20778)
                     /locus_tag="U0342_000872"
     CDS             complement(19933..20778)
                     /locus_tag="U0342_000872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2422228.1"
                     /translation="MTKKIVFVDVDGTLVTDDGLVPASAKTAIIKARNNGHQVYLCTG
                     RSKPELYDSILSIGFDGIIGAGGGYIEVDDEIVYHKKVANEDVVHMVDFFHEKNLDFY
                     LESNGGLFASENLEAHLDSLVYGDVENDPIAREKKANNPHPFMTSLTYGETNLYRTDV
                     NKACFLENKNVPFEEIKNEFSGKFEVLHCTVPIFGDDSGELMVPDIHKATAIEFLLAH
                     IGAEKNTTIGIGDGMNDAEMLTYCETGIAMGNAKEELKLLADEVTKSVEEDGLYASFL
                     KHGLL"
     gene            complement(20898..23681)
                     /locus_tag="U0342_000873"
     CDS             complement(20898..23681)
                     /locus_tag="U0342_000873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM2422229.1"
                     /translation="MDMVKNEWKKLFKNKILLLSFVVILFIPLLYASFFLKSVWDPYG
                     KTGDLPVAVVNNDKPVDYNGQTMDVGDQLVTKLKSNKELDWNFLSKEDAEQGLKDGKY
                     YMIVTIPKDFSKNAASVLDKDPKKMELSYKTNGSLNYLGQVVSEQGAKQLKSEVSAEV
                     TKSYAEAIFDKIKESGEGFAQAADGSGKIKDGLVKSQEGNKTISTNLKTLADSSLTFK
                     DGANTLEVGLKTYTDGVNTAAAGGDKLNDGVSTLAAGVGPLKDGVAALDGGATKLASG
                     VSTYTSGVDTLAGGINQAYTGSTALSDGLNKMNGSVPTLASGITQLNNGQKSLATGLD
                     SLVDGSNKLSAGLKELDGNLTDKQGKIAQLKQGMNDLQQGIDQLNKSVNGEDAALAKQ
                     LAALQKSLSDLQNGLTFIKSNANFDAEAIKSKINATAGVSAEDKQKIIDAIQADLDKE
                     TQKSATQVATVEQLQSGLSGLDLAAIQTQVTELQTGVAKISAGYQAVHGGTNEAFNSI
                     HQAINGSGSQTLLGGANQLTAGLKSAQAGNAKLVAGTNQLNNQVPTLTSGVGQLAAGS
                     ANMENGLSQLNDGGNQLASNSGALRSGATELQGGTNQLAAKVPTLAGGVNQLQAGSSQ
                     LVGGLNQLSANSPKLVSGVGQLADGSSKIADGSSKLANGSFQLGDGLTKLTDGSTELT
                     DKLADGAQQVKDTKATDKTFNMIAAPTKLAHNEYTHVSNYGHALAPYVLSLALYVGAL
                     VFNFIMPIRRVSMEGQPAYKWWLSKLSLGFVAAVAMALLEGGIMIALGLRPDNIVEFF
                     GTAIITALAYMFLIMLLAMTFDNPGRFIAMVLLIVQLAGSGGTFPMPLTGWFFNLIHP
                     FLPMTYSIYAFRESLAAGMGPNVYSMSMLVLTIIMIACVGLLYLSMSHLKKRHDAHES
                     ALDDNQKLMALEN"
     gene            complement(23715..24185)
                     /locus_tag="U0342_000874"
     CDS             complement(23715..24185)
                     /locus_tag="U0342_000874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2422230.1"
                     /translation="MKLSKSMDQVFCIMTMLYTQKVDVPISSVTIHHRLRDSSPSYIS
                     KILRKLVVSGLINSVSGNNGGFTLAKDPEEINLLDIVEAVEGKIDTYPDSDLIHTVFS
                     DYHEFAESGIHTITSAFRNADKEYANYLYSQKLSVLVEQVIGKERTTIIDWNEA"
BASE COUNT         6966 a         5148 c         4332 g         7855 t
ORIGIN      
        1 aggaggagtt attcatgcat acagaattaa catttgagca attagaaagt ttttctcgaa
       61 aatggcgtga aaatccagat aaattggtat ttcaagctag tattatcaag aatgggatta
      121 aagcagcaac tgagaatcct gcatcaaaag ttagcattca acctgtcttt tcccacgaag
      181 ttgctacaga taaagtttct aatcaacaac aaagtggaag atgctggatg tttgcagcat
      241 taaatacgtt tcgccataaa ttaaacggaa cgcttggttt gaaggatttt gagttatcac
      301 agaattatac taatttttgg gacaaacttg agaaagcaaa ttacttttta gagaatataa
      361 ttgaaacagc aagtgaggat gaagatagtc gattagtttc gtggttgctt gatacacccc
      421 aacaagatgg tgggcagtgg gatatgttag tttcaattat tgaaaaatat ggagtggttc
      481 caaagtcagc tatgcctgaa acgtttcaaa gtagtaagtc tgctgattta aaccatctat
      541 taaatgaaag acttcgtacg gatgcggtta ttttgagaaa tgctattgct gagaagaaag
      601 atactgcaga tttgaaagaa gaaatgcttg ctgaggtcta tcaactcttg gttatgactc
      661 taggcgaacc acctaaagta ttcgattttg agtatcgaaa taaagacaat gaatttaaac
      721 aagaattaca aattacacct aaagattttt atgaacgcta tgtagatatg gatttgaaag
      781 attatattcc acttattaat gcaccgacca aagataaacc ttttaatcaa gcttttacag
      841 tggaatattt aggcaacatt gtaaatggta cacctattaa gtatttgaat gtagaaatgg
      901 atgtcttgaa aaaagctgct gctgatcaga ttaaagatgg ggaaacagtt tggtttggat
      961 gtgatgttgg acaactttca gaacggaata ccggtattat ggatacggat attttcttgc
     1021 ttaatcagac ttttggcttt aaaactgcga tgactaaagc tgaacgcctg gattataaac
     1081 acagtatgct tacacatgcg atggtattaa ctggagtgaa cattgctaat ggagaagtaa
     1141 atcgctggaa agtggaaaat agttggggag aaaaaattgg taataatggt tattttgttg
     1201 ctagcgatgc ttggatggat gagtttacat tccaagtagt ggtgcataaa aaatatctat
     1261 ctaaggaatt aattgaatcc tttaaccaaa agccaattgt gttaaaacct tgggatccaa
     1321 tgggttcgct cgcactttaa aatgcgaatt cggaaatgat ttttattcca ttcatttgaa
     1381 aaagagctgc tgctacgccg gtaccatctt ttatttttcc tgagaaggta ccgtcgtaaa
     1441 tagcacagct accacaagat ggactttttt ccttcatgat tatttgcgta ataccgagtt
     1501 cttgcatttt aattagagta agtctcgctc cgttcttata ttcttctgtc acatctgttc
     1561 ctttgttatc aatgactttt gcatgtccta accagacatc tttgccatca ccacctatta
     1621 tttctgctgg atttcttggt gtaggcagtc cgccggtaac ttctggacaa aaaggaatcg
     1681 cttctcctct ttctaccatt tgttttattt tggttatttc tttatctttc ccgtcatatc
     1741 tacaggcaat tccggctagg caagcactta ctgcaatcat tttattttcc tcctttatat
     1801 tcacatttat tttaacataa aaaagctgcc cccaacttat aggcgacagc tctgagatta
     1861 ttagatattt tggtatgcta cggcgatttg cgtaccgatt aaagcattgt gttttacaag
     1921 ctcgatattt gcttcgaggc tcttaccatc tgttagttct tttactttac caagtaggaa
     1981 tggtgtaacg tctttcccgt gaatgtgatt ttcttcagct tctttaagcg ctgtttggat
     2041 tacatcgtta attacttttt cgtccatagc gaattcttct gggattgggt tagtaattac
     2101 tgcgccacct ttgatttgaa gatcccattt cgctttaagc gattctgcga taacttctgg
     2161 agcatctgca cgcaatgtta attctacatc gcttgaacgc gtgtaaaatg ctggtaatac
     2221 gtcggtttgg taaccaataa ctggaacccc ttttgtttct aagtattcca ttgttaagtt
     2281 taggtctagg attgatttag ctcctgcaca aacgacagca acatttgttt tcgctaattc
     2341 ttctaagtca gctgaaacgt ccattgttgt ttcggcacca cggtgaacgc cgccaatccc
     2401 accagttacg aagatgccga tttctgcgag ttcagcacaa atcattgttg ctgctacagt
     2461 tgttgcgcca agttgttttg ttgcaataag gtaaccgata tcacgacgag aaacttttgc
     2521 cacattgcta cttttagcga atagttctag ttcttcatca gaaagaccaa ttttaatttt
     2581 tccgtcgatt aaagcgattg tcgctggtac ggcaccgtta tcgcgaataa tttgttctac
     2641 gtcacgtgcc atttcaacat tttgcggata aggcatgccg tgagagataa ttgtagattc
     2701 tagcgcaacg attgcttttc cttctgcttt tgcttgtttt acttcttcgg ataatgataa
     2761 ataatttttc atttgaattc ctccatgtct ttttgtagtt gggatgtcga taaattttgg
     2821 cgaacggtat actcagattc gagtgttcgc gcggcattta cgctccctgc tcttaaaatt
     2881 tctttcaatg cttttccttc taaccatgcg tagataaccg cggagcaaaa tgcatctccc
     2941 gctcctgtca cgtctacaat attttcaatt acaattgctg gttcaaaaat agtaccttca
     3001 cctttgtttg ctgcaactgc gcctttactg ccatttgtaa cgatgacatt ttttacgcct
     3061 agatctaacc atttttgtgc agctaagcgc cagtcttcgt catttttgat agtcattcct
     3121 aggtgcgttt ctgattcgtc tcggttgcaa attagccaag ttacatgatc aagtctttct
     3181 ggtaaatgag acattttggg tgaagacaca ggaacgagta ctaatggaat tgaattaatt
     3241 tcagcaaagc tgccaagata ttctagtgtt tctttcggac agtttaaatc tgcaatgatt
     3301 gcgctcgcct gactcagcaa gccttcattt tttgcgagta catctggagt taagtgatca
     3361 tatgcatcca tgtccgctag tgcaacgagt aaatctccat tgttttcgag cactgctgta
     3421 taagaaccag ttgcgatgct tgggaatgct gtgacgtaat ctaagttcat atatgtatta
     3481 ctagcatttt tgacagcttc ccagtcagag tctgttccac aagcagtgag taatataact
     3541 tcttttccga ggcgtccaag gttttcgcct acgtttctag caaccccgcc agcactttgt
     3601 gttgagcgca ctgggtttga tgtggctagt tgggccttgt ctttaatata aaacttccga
     3661 tcgacgttag ctccacctat acaaacgatt tgtttggctt catttaaaat ataagctttt
     3721 cctaaaatgc gacctttctt aataaggccg gaaataaggt ttgcgactgt cggtcttgat
     3781 aaatcaagta tgtcagcaag ttcttgttga gaaatgtaag gatttttacg gatggaattg
     3841 aaaattatct cttccttttc gttcattttc gctttattat tctccacgat ataatgcacc
     3901 tccattccaa acttttgttt tattttcaaa cacatgttta ttatatatgt aaatgctttc
     3961 ttttgcaaac taaaaaacga aaatccgctt ctttttagga aggaaatttt cgtttaggtt
     4021 catttatttt gaagaatagc cagttcactt tcagttaaag ggcggtattc gccgagtcca
     4081 agtgactcgt ctaattgtaa attccccatc gaaattcgtt ttaaatagct gactttctta
     4141 ccacgtgcgg cgaacattct ttttacttga tggaatttcc cttcttggat agtgacgttt
     4201 atttcgtttg gtgtaataat ttctaaacgt gctggtttgc aagtgtatcc atcgtcgagt
     4261 tcaattccag ctgcaaaagc ttctacatca gctagagtaa catcaccatc aattttagcg
     4321 tagtatgttt tatctatatg ttttttaggt gagagcaaat tgtgtgcgag tgtgccatcg
     4381 ttcgttataa ttagcaagcc ttctgtatct ttgtctaagc ggccgactgg gaatggatca
     4441 gtgagcgtgt cttcttgcgc aagcaaatcg atgacggttt ctgacacatt atcctcggtt
     4501 gcgctcacga cattttgtgg tttatgtagc ataaaataga cgaattcttg gtaaacgact
     4561 ggtgttccat ggacagttac ttggtcttta tcagggttta cttgggtttt gctatctttc
     4621 tgaatcgtgc cattgacgac aactgcccca gatttaagca aaggtttcac ttcttttcga
     4681 ctcccgaaac ctgtatggga caataattta tctaagcgca tggtttcgct cctttttttc
     4741 ttttattgta acaaaaaaac gaagcttcct caaaggtgct ccgttttctt tctattattt
     4801 agtttcaaca acttgtttat tttgaggtat tgttaagccg aggttgcctc ttaatgtcgt
     4861 agctggatat tcgtttcggt ataaacctcg actttgcaga agaggaataa cttgttccac
     4921 aaaagtttca aacgttccag gaatatcaga agcaataata aaaccatctg cagcatcatt
     4981 ttggaaccaa acatcgatta aatcggctac ttgttctttt gttcctataa aaggtgtttt
     5041 tggcgttgct gcttctgttg ccacttgacg aagggttagg tgccgttctt tcgcttcttt
     5101 tttgattcgg tctgttgtgc tttgaaaggc atttttgcca atatcaccaa ggtctgggaa
     5161 tggagcatcc aaatcaaatt gacttaaatc atagtcgtcg aagtaacgtg ctaggtaagt
     5221 taccgcattt tctattggaa ttaggctagc aaattcagta tatttggctt ctgcttcttc
     5281 caacgtgtcc gctacaattg ggctaattcc tgggaaaatt cggacttcat ctgcatttct
     5341 accagccttt tcagcgcggg ctttcacatc ttgatagaat tcaatggctt cttctaagga
     5401 atcagaatga gtgaaaatgg cttccgcgtt tttagcagcg aaatcgcgcc ccgtactaga
     5461 cgcgcctgcc tggaaaacaa ctggttctcc ttgcttcgag cggccgatat ttaacggccc
     5521 ttcgacttgg aaatactctc cttgatgatt taaacgatgt aatttttcag gattaaagaa
     5581 ttcaccggtt tctttattat aagtgaacgc atcctcttcc caagaactcc agagtccgcg
     5641 aaccactttt aaatgttctg ctgcaatggt gtagcgatcg ctgtgggttg ggagattttt
     5701 cttgctatga tttcgcgcgg cgccttcttg cggagaagtg actagattcc aacccgctcg
     5761 gccgccgcta atgtgatcaa gcgaagagag ctgtcttgcg agtgtaaatg gttctgtaaa
     5821 agaagtcgag aaagttccga caagtccgat gttttccgta gactcagcta atgccgataa
     5881 aatcgtaatt ggttcaaaac gattaagaaa atgcggaatc gatttttcgg aaataaaaag
     5941 gccgtctgca ataaatacaa aactaaataa cccttgttcg gcaattttgg cgcgtgtctt
     6001 ataaaaatct aaatccgtac ttgctgcggg gttgatgtcc ggatgtcgcc aaccatctgt
     6061 tgttccgcca acaccgtgaa taattgcacc aaactgaatt gtttcttttc tagtcatttt
     6121 acttcctcct tttcaaacaa tgctttttcc aaatgttcca atccgatttc tgtaactgct
     6181 tggtaggtcc ctttttcaat atcgccgatt tctacgactg ggacataacg aatgccgtat
     6241 ttcgcttgca gtacttctcg caaataatca tggtcggtga cgtcgatatc ttggaagaca
     6301 attttttgct cagttaaata atctttcaca tctttacaat aatgacatcc tactttactc
     6361 caaacaacga cgttagccat ggacaacttc ctcctttatc gattcactta ataattggta
     6421 cgagtatcgc ttgatttccg tagatttaac tggtgttaaa acaacaaaat cttggatatt
     6481 atattctttt gaaaggcgtt taatctctgc tccgacttct tgtttggttc ctgttattgc
     6541 accaattctt tgggtaataa accggtatgt ttggttgata tcttttacgt aggattccgc
     6601 ttgttcgcgc gatccgacat taactctacg tccgtccgca agctcgactt tgattgactc
     6661 tcgctctgga atatgtcggt ctgctgcgat tttagtctca gctactacaa caattggtgc
     6721 tagttggaaa ctagcttttg tgtttattcg gtactgttca aatagctcgc gtgcttcttt
     6781 taaaacagct tcttctccat ttataaaata agcaaacaca aaggaaatac ctagtttggc
     6841 agcttgtttc gcgctagctg cacttcctcc aagcaaaaat atctctggtt tgttttctgg
     6901 aagtggtttt gctgcaatag ccacctctga atgatgggtt acaaaatcga ctagttcttt
     6961 caatttggca tcaaaggttc gcgtaggttt tacgaagtct ttttgaaggg catcggttgc
     7021 tggttgaaat ccgcctggcg cttttccgac gccaagtgac atccgacccg gcgctaagtt
     7081 ctcaagcaca tgaaattgtt cagcgacttt atatggacta taatgttgta gcattattcc
     7141 gccagatgca agcttgattg tgctcgtttt tgcagcaata taccctaaaa gaacttccgg
     7201 agctgcgcca gctatttcgt ctgaattatg atgctcggca acccagaaac gatgatagcc
     7261 gagttgttct gcgagttgcg caagttctac ggtattttgc aaagcttcac taggtttttc
     7321 gcctggattt ataatacttt ggtccaaaat actgaatcga atcgtcatat gacacgctcc
     7381 tttttcactt ctttgatttc atataaataa tccgctgaaa ctcggtgtaa aaagcgtttt
     7441 gtccgttctt ctttggtatg attaaacact tcatcgggag taccttgttc gacaattagt
     7501 ccaccatcca taaaaacgac ttgatctgcc actcgtttgg cgaactccat ttcatgcgta
     7561 acgacgatca tcgttgcacc cgcacgtgca atctctagca ttacttccaa tacttcaccg
     7621 acaagttcag gatcaagtgc ggcggttggt tcatcaaaca aaatgacgtc tggattaata
     7681 gcgagtgctc gtgcgattcc aacgcgctgt ttttgcccgc cggaaagttg ggaaggatag
     7741 gcactaaatt tgtccgccaa accgactttt gtgagctctc gttctgctat ttcacgggca
     7801 atttttttcg gcatttttct agcgactgtt agaccctcca tcacattttg aatgaccgtt
     7861 ttgtgcgaaa agagattata ctgttggaaa accatcgccg tatttttccg cagttgcaaa
     7921 acttcttttt tggatggttt cttacagtta attatttggt catgcatcga aatttcacca
     7981 ttttcaggtc gttccagtaa gtttaggcat cgtaaaaagg ttgttttccc tgagccactt
     8041 gggccaagta ttgttactac ttcacccttt ttcaccgtta aatcaattcc ttttaaaacc
     8101 ttgttttcac caaagctttt ttgaatattt ttaattgtaa tcatactgtt cctcctcgat
     8161 atttagcgat atttttttcc aagatataat taatcgcttc aatcaaaata gttaaaaacc
     8221 aataaatgag tgcggcaccg ataaatgctt cgagaaacgc gtaattgtcg gaagctacta
     8281 ttgttgccat tccagtgatt tctgggactg caacgatggc agcgatggat gtggtatgta
     8341 aaaatccgat gcacaaattc gtgaaattcg gtagggcaat catgaaggct tgcggtaaga
     8401 gcacttttcg aatcgcttgg ccatgcgtat atcctacaga gtaagccgct tccatttgtc
     8461 cgatatcaac cgcaataata ccggagcgca aaatctcggt taagtaagct cctgccgtga
     8521 aagacagcgc gataatgaca aaaataacga ccggtatttt gtttgcagaa atgcctaatc
     8581 cgaatgattt gctcaaaaaa tccaccaata ggggaatgcc taggtaaatc agcataatat
     8641 gcagaatcgc tggggtgctt cgaaaaaaag aaacgtaaaa cttcgctatc ggttctaaaa
     8701 atcggacatg atacatccga atcaacgtca tacctatagc gataatgaaa ccgaacaata
     8761 tcggaaagaa agtcatcgca agtgttaacg ggatagtttt taacattgcc attacggcgg
     8821 ttccaataaa aggcacatca agcggcatca ttatctctcc tttataactc gatatcgaaa
     8881 atactcgtga atctggtgtt ttctttttta actcgttttt caatccattt gaaggaatat
     8941 tccagtaaga cggccgtcaa atagtaaata attgataaag aaatatagac ctctagcgcg
     9001 tgattactta gtgttatcag cgtctgacct cttcctgaca tatccattac tccaatcgaa
     9061 aaagcgagcg acgtatcttt caaataacca atgactaaat tgccaaaatt cggtagagct
     9121 tgatagagtg cttgtggcaa gatgattcgt aaaaacgttt ggcgactact cagaccaata
     9181 ctataagccg cctctgcttg tccggcatcc acgctgttca cgcctgcgcg aatcacttcg
     9241 gcaatggtcg ctgcactgct taacgcataa gtcgcaatcg cagcataaag gggatccatt
     9301 tgtgataaat caatgccaac gatgcttgaa agtgccggga ttccgtaaaa aacaataaat
     9361 agttgaacca taatcggcgt cccacggaaa aacgaaatat acactctggc caattgatct
     9421 aaaactggta tcttataaat tcttggtaaa gatagtagaa cgcctaatat aaatccaaaa
     9481 ataagcgaga gtgccaaaat atacaacgta atcggtaaat aaccagctaa cgttggaata
     9541 aaatcagcaa tcattttcac atcgaacgct ttatccattt taatggcacc ctccctcgtt
     9601 taatattgtt cttttgaata atctgcgcca agccattttt cacttaattt tttaagtgtt
     9661 ccatcatcaa taatagattg aagcgcctca tctacatctt tgcttagttt cgtttcatct
     9721 tttccgagca tgaagtatac tttcgcatta gatagaacat cgccaactac tttttctttg
     9781 atagcgcttg ttttattttg gaaatctacc gcgaatggtg tagaaatcgt tgcatcagcg
     9841 cggccagttt tcagttggtt cgctgtatca tttgaccctt gaccttcata agcaatttca
     9901 aaattattgc cttgttcttc attaattttt ttcaatacga gcgcaccatt cgatgttgcg
     9961 cttgtgataa cgcgttttcc agctaaatct tttgtgctgt ttatgctgtt attactgtct
    10021 aataccgtca attgtaatgg gaaattattg tatgctacat cattaaataa aaatttcttc
    10081 tcgcgttctt tacttttttc catttgatgc gcgacaatgt ctacttttcc agctccaagg
    10141 ctaacgagta aattagaaaa atccatcgtt ttaaatttaa atttatagcc gggcaaacgt
    10201 ttatcgattt cttttactag ttcgacatca taaccggtta atttcccatt ttcatccaaa
    10261 aagcagacat ttggaaattg tgttccagtg ccaaccgtga ttgtttgtac tttttgattc
    10321 gctgcttctg gttcttcttt tcctccacat gcgcttaatg ttaatgcggc tgtaagagcc
    10381 agtgccaaaa tcccatattt ctttttcatc ctttttcccc cttttttatg tccagctagg
    10441 tattccgagt agtgtggcat cgaatttttc cggaattaag attttccgca tcataacacc
    10501 cacatcaccg tcttcctcat gttcaaagta gacctcataa ccgcggcgta gatacatatc
    10561 cagcaaccac gggtgttttc tagcagaagt tccaagtgtc agtgccggtg cttttagcgt
    10621 gtcgcgaagt acccgttctt ctacatacgt taataattta tcgccaatcc cctgtcctgc
    10681 aagttccggt gccgttgcaa accaccaaac aaatggatat ttagaaggtg gagagctgct
    10741 ctcccacgga aaacgaacgg taatcgtaga aattaatttg ccgtttcgtt ctaaaacaaa
    10801 agcagaagaa ttaacaatat tttctgtcac catcgctaaa tccgcattcg ttgacggcca
    10861 atcaattcct aattctttca ccgattgaaa agcactcgac aacaattcca aaaattccgg
    10921 cgcatcatcc acagtcgcta ctctaaaaat atcttctgtc atttcccgct ctcctcctta
    10981 aacttccact gattgttgat ttaataatga aatgaattgg tttaaagcaa tatctagccg
    11041 ttctttcgct gaagattcaa tttcatacag cccatccccg aaccgttcaa tttgtttgtc
    11101 taccgtaaac tgccctttta atatcgtttc tgctccaagt tccttcaaca caggatcaag
    11161 tgcgtattgc agtgcgagca aatgtccgtt tgatccacca agtccaagtg gcaaaacgac
    11221 tttccctttc aaagctttga gtggcaaaag atccaaatag gctttcaaca ctcctgaata
    11281 ggctgctttg aaaatcgggg tagcaataat aacgcccgaa cttgattcaa tttcactatt
    11341 tgccaattga atatctgaat gcgcgaaatc agcggtgact aatgcttctg cgtttatttt
    11401 atgcacttcg atgatgttca cttctaaacc attcgttact aattcatttg ctgctagttg
    11461 agttaatcct gtaagcctgg attctgtttt gattccccca gcaataattg tcactttccc
    11521 catcaaatcg ccccttttca atccctatca acttacttgg tttttagata ttagctatac
    11581 tataaagtaa aagattgggt ttggctaatc aaaaaaacta atggctaacc acagtaatac
    11641 taatacttct gcctgaatcc gcattattcc tatgaatttt atcagattaa taaattgctt
    11701 ctcctatttt tacagtgtat actgttagaa atatcaaaaa actccaatat gaagggggaa
    11761 ttatattgga atttcgaacc attaaaactt tttatacggt ggttaatacg ggaagttttc
    11821 aacgcgcagc agaagtatta aattattcgc aaccgactat ttcgatgcga attaaacaat
    11881 tggaacaaga cttagatgtt cagttattcg aacgtggcaa aactttaaaa ctaacgcacg
    11941 caggtagatt attttacgaa agggcgggcc agctcatcgc tcaatatgaa gtactcgatc
    12001 acacgatatt cgacttaaaa aatggcaacg ccggccttat caaagttgga atttccgagc
    12061 ctagcgctag tctcgttttt ccgaaaattt taaaaacgtt tctagcggat tttccaaagt
    12121 taatggtgaa tgtatcggtg gatgatgcga atacttgtag ccaaaaactc attgatgggg
    12181 aaattgattt tgcgatttgc ggagaaccag agctgatttt ggagaacttc tattttccat
    12241 ttttccatga ttcgttagat ttaatcgtct cagaaagcca tccgttagct tcacgtactt
    12301 ctgtggagtt acgtgattta cgcgatgaat gctttatctt cacaccggca aattgcccca
    12361 tccgcatcca aatcgaacag catttaaaac gtgctattgg tagtgattat aagaaaatgg
    12421 agctcacaag tagtatgtca cataagtatt ttgttcgtga aaatgttggt gtatctatct
    12481 ttactagcac cgcgcactca gaactacttg atggcacggt ccgcattccg attgaaaatt
    12541 tacccatctc accgccaatt ggacttttaa ctaaccaaaa agaaaaagat tttgacagca
    12601 cgacgaaaga acttatcgac cggattattt attattttga tgataaaaaa agacagctag
    12661 gctaaaaaat tagcttaact gtctttttta ttaaaattct aattgcatat tcgcctctat
    12721 cgcaagtaaa ttatcacgat acactttcat ttctttccgc gtaatcgtac ctttttcaaa
    12781 gtagtgttga attgtttcgc gctcaatttg tgaagctaag tcaattgttg tttgtagcgc
    12841 ttcatcattg ctttcttttt tatttttccc acgacccaat gctcgctcaa aattcattaa
    12901 ataaagcgaa atgatttctg ggttatactc atttgaatcc agttcttgta gtttttgaat
    12961 gacgaataga ttgttttcat tttgcagttt agcaatttct tttctacgtt cttcaaaagt
    13021 aagaggcaca aatcggaagt ctcgaaaacg atgacttaat aactggcgat accgcattct
    13081 cgctcggtac ttctctgctc gtgtttggac gtagagtcgt tttccaagcc gcatcatatg
    13141 cgaaagtccc acaccagtat caatttttcg ttcaaatact aatcttctcg tattttcaag
    13201 ttgccattct tgcgttaatc gccgcaattc tttttcagta gcatttactt ccttatgctc
    13261 catcaaagag aaaatccgat tattatacat attcaacact ttattcattt ccactgtatt
    13321 ttcatctgtt ttatacgcct gtaattgctg cacaatatcg cgaagtagta caatatctgt
    13381 cgtatgatcc gccgcaattt tgtctttctt atctgcaaaa agtggcaagg tgaaattggc
    13441 caaaagtagc gtcgtaataa taactccagc agcaataaaa ataagtaaat cacgctcagg
    13501 aaacgcattc ccattaccaa gaacaaaagg taacgaaagc gcactgacta atgtaattgt
    13561 cccgcgaaca ccagccacag tataaagaaa agtatttttc aatctgctaa ccaagtccac
    13621 tttcggattt tcctcgtaat tgcggaaaaa caagatccat aaaaacctta gcccgagcag
    13681 taagaaagtg attcctagta tatacacgaa tagcatacct ttttgaatat tagcatcttg
    13741 ccaaatcgtc atcaaaattt gcggtaattg tgtccctagt aagataaata ccaaaccatt
    13801 caaactaaaa ataataacag accacgtgtt ttttgaaagc aagttcaatt gcgcaatttc
    13861 aggatttagt cccttgtaac taaatgaatg caccattccg ccactaacta ctgctaaaat
    13921 cccatttact ccaacttttt cggctaccat aaaaattaaa aatggtaaca aaatttccat
    13981 cagcataaaa gaagtcatat tttcgattcc tagctgacgt aaaccacgca ttaacatgat
    14041 tttcagtaaa ctaagggcag ctccaagcgc aatcccacct aatgaaagaa gcaaaaagct
    14101 tgttccagct gacataaatg agaatgttcc ggttacaagc gccaacacag caaactggaa
    14161 cgaaacaagt ccggaagcat cgttaataag cgattcacct tccaaaatat gcataatttt
    14221 atggggtact cttacttttt cagccagcgc ccccaccgca acagcatccg taggcgcaag
    14281 tgccgcagct aacgcaaacg ccgcggcaaa aggtatcgca ggaattaagt agtgaataaa
    14341 cgcacccagt accccaaccg ttacaaacac tagcccaatc gataatgaca aaatagcctt
    14401 ccgatttttc cataaagatt tcttatccgt actcgcccca tcgttaaaaa gaatcggcgc
    14461 cataaataat aataaaaata attccggatt taaatccatc gtatgatccc caagcggaat
    14521 cgccaaaata atccctagta ttacttgaat taaaggcact gcaatccccg gcaaaaatcg
    14581 gcttaataca ttagacaaaa acaccgcgct caacattaat aaaatcagtt caaatatttc
    14641 cattaataca tccctcgttc ccgtatccgt gccactgagt cagaagcgtg gcatttcttc
    14701 cgttcccata ttagcaaaaa aacttttcag aaacatccgt ctctgtatgg agtttcctag
    14761 ctatttttac ttcttctgat agacaatttg ttcgtctaca actgtcatca tagcgctcac
    14821 ttgacgaagg tctgcttgtt tcatttgaaa tggatcttct gccaaaatcg taaaatcagc
    14881 aacaaaacct ggtgcaattt gtccgcgtgt agttgttttg tagcccgcaa atgccgcgcc
    14941 ttttgtatat agttgaatcg cttcaaatac agtgagtgcc tgctctggcc aatattctac
    15001 tccatccaaa tctgcattcg ccgttctagt aacagccgca tggatacccc aaaacggatt
    15061 cggcacttca atcggcgcat cgcttcctcc agctagtggg aaaccagcct gtagaagcgt
    15121 tttccaagca aaagctagcg gtggatgatt ttctccaagt acttctagcg cccacggaag
    15181 atcactcgtc atgaattgcg gctgtatatc aaatagcaca ggtaacccgg ccgcttcttc
    15241 tattagcgct tctgtaagcc aaggtgtgtg gattagtctg tcgtattgcc cttctctagg
    15301 cggattggca cgtaacgttc gaataacatt agcaaaggct tgatccccta aaatatgaat
    15361 agcaacaggt aatcctgctt ttcgcgccgc tttaaccaaa tcttcaaacg cttgatcaga
    15421 atgaatttgc agtccttttt catcagagtt atccgcatat cccgcactca tcaacgccgt
    15481 tcgcgagcca actgttccat catagaaaat tttcatcgcc cctaattcta aaaaggcatc
    15541 cccacttacg aaactttcat tagaagccga aaaagcagct agttctgcgt ggtgaaccag
    15601 caaatgcgca cgaaacggca ttttattagc accaatagta tttcgaaaag cagctaaagt
    15661 cgaagtgaat cccgtgaaat aatgtaaatc ttccgagtgt gcacccgtta tgcctttcga
    15721 ccacagatca gttatcgcga ttttaagcca tgcgcttagt tcagaaggcg ttgctgcagg
    15781 gaaagaatct atcgccatag tcgttgcatt atctcttaaa atccccgtaa aattacccgc
    15841 tttatcacga acaatttcgc cgccaccatc aaaaccattt tccgaaaaat cggcaatatg
    15901 cgcttgtaat gcagaattaa tagaaacact atgataatca atgcgccgaa ctaaaatcgg
    15961 atttgtctgg cttacttcat ctaaatcggc caaagaaatc aacgtttgct catctgacca
    16021 tttattttca tcataacctt ccacaaacaa ccattcatca ctagcaagtt gctttgttct
    16081 ttcagcaatc agggctagtg cctctttttt agtagtggtt tggtttaaat taagacgttc
    16141 taaagcttgt ccataccaaa gtaagtgaat atgcgcatca acgaacccag gaaataccac
    16201 tttctcttct aaatcaatcg tttcggtaat attagccgca tgttgttttt ctagttctcg
    16261 tgcttctcca accgcataaa tatgaccgtt ttctgttaat accgcagaaa cttgatcccc
    16321 ttcagctgtc atttggtaaa aggtagcatt tttccataat ttcatttttt attccccctg
    16381 attgacggaa attttcaaag ctgctttatc ttgttggtcc tttttctgta aaatttgttg
    16441 tagtgtaata ctaattaatg cgcatccgag taaaataaat gcgccaataa atagagcttt
    16501 aatgcctccg agattttgaa cgacaattgc tcctaaaaat ggtgctagca tgcgcgctgc
    16561 tgttgccatc ccgttcacaa gaccttgata caagccagcc gctccttttg gtgcaagttg
    16621 ataagcaatc gttggaatcg ctggccaagc aaacatttcc ccgagcgtta agaaaatcat
    16681 tccgagtaca aagccactat aaacacttgc attcattgcg actacaaaag ataagataaa
    16741 taagaaaata ccgatataaa tttgtgcgag taaatatttt ttaaatctgt ttacaacggg
    16801 gattaaaatg agctgaccaa gtacaatcag cgcgccattt aaactccata aatttccgta
    16861 ttcgctcgat gtcacacctt tgatttctgt catgtacgta gataaattcg actgccactg
    16921 cacatgcggc aattggcaaa gcaagtatgt caataataat agaataaaag aacacaaagc
    16981 tagtttagtc ggaaattcga gtttagcgcc ttttttgcga tgttttgttt ctgcgcttac
    17041 tcgctccgat ttccaatcaa tcttgtggaa aaagaaaaag aaatatccag cgaaagcaat
    17101 cgcaaataca aaagaaccaa tgtatacatg actcattcct tgtttcgcta gaagccctgc
    17161 aagcaacgga ccaatagcca cgccaatatt ttgcgccaca taaatcgcat taaatccagt
    17221 tcttcctcca gtcggatgtg ttaaccctgc tgctgcgtat aatccagaga agaccatccc
    17281 catcgcgata ccaaccgccc acaaattcca aataaagaat ggaaatccgt gaaaaaagca
    17341 caacgaagca gttgaaagca ctaatataat cgttccaatc gtaagtgaaa taaaaccaga
    17401 aaaccggtca aaaataagtc cgccgataat actagaaaca atccccactc cagaatttat
    17461 caacaacact aatgaagcgt ccgttgtcga catccctaac tcttgcgtca tgtaaatcat
    17521 attgaaaggc caaataaacg atagccctgt atatagtaac accatcccaa taattacaat
    17581 ccataaatcc tttggtaacc attttgtcat ttcctacact ttcccttcat taaaactcac
    17641 cttttttagg gtatcacaac catccacatt cgaaaagaaa aacttcatca aaaaaccacc
    17701 tagcaaattt tgctggtggc taataaggga ctggcgataa atccctatca tggttactta
    17761 taagtgtact atgaattcga atttttgtct gtgctaaatt aagaaatatt tcaattaatt
    17821 ttttgtaaaa cttttttata ggctaagtct ctcaaataat tatgaaattg taatacatct
    17881 atttcaaggt aatagcctaa ttcatataga atatgttgct gcttcaattc ttttacttga
    17941 aaagcacata tttctttagg aacaacttgc ataatctctt gtctaaaaaa atctaacgct
    18001 actttccagg aagttgtatg taatctcaaa ggcatttctt gaatgaacca ctgaatgcaa
    18061 tcaatttcat ttcgatctaa aaaattcttt tctatcatgg ttaaatcagc aaccttaatc
    18121 ttacccatac ttttcaagat atcctttaca tatgttaaag gaattttcca ggctaccgtt
    18181 ttagagaggg gatggatttt tgtctcttct cgagtaaaac caagaatgct tccttttccc
    18241 caagaactat ttcttgcagc acattgtgtt acatttccct cgtcaattgc atacacatat
    18301 tcattgtttt ctgggcaatg aacaatttcc tcctcgttcc aatacaccaa ttccgctact
    18361 tcttgaaacc ttggattatt agttaacgta aacattaatt ccgttgtaaa cctttcctcc
    18421 atttatcccg cctcctcaaa atcctcacat caattcatct ctctttatca taataaaaaa
    18481 aaagcgagca aagagttctc aaagaaccat cttctcgctt cttatgtcca ttttgtgaca
    18541 aaatcacttt ttcagtttta ttaatgtaat tttcttagca ttttaacgga aaataatata
    18601 aaaaattatc tttatttccg agattcacct tttcgaataa cccaccaaag agaaagacat
    18661 gtaatacctt gaaaaatgaa aaatattcca agtataatcc caactgcaat cgctactagc
    18721 atgtttgtga acaaggaaat aacagcaata atcaatccta taattcccat gataagtagt
    18781 actgtccatc ctggtaaacc ttttacagca aacgccgtta aaatacgtaa tatcgctgaa
    18841 gctagtatcc aaatcgcgaa tataataatg aaaacacgtt ccgccatatt tgactcgaaa
    18901 atagcaaatc caccaataag gattgataaa atcccatcaa acattatcca tttggaaata
    18961 ctccaatatt tttgttctcc aaaataagaa atcacttcat taatcccatt taaaactaaa
    19021 ataatcccaa taaaaatagt tagtgcttgc agtgaagtac ttggattaaa cattaaataa
    19081 attccaagac caatcatcgc cacaccgaga attaaaacga aatacgtgta taactttctc
    19141 atggttttgc ccccttttta gtgattagta agtaatgacc ctgccgcttc atcaataata
    19201 aatacgacat tcggatggtt acgtaaaatc gacgctggac aactttcatc aattggtccc
    19261 tcaagtaaac ctttaacggc ttctgctttt cgttcaccag aagcagtgac taagatttgt
    19321 tttgcatcca tcatatcagc taatccaagt gtaagcattt gggatggcgc ttcgtcttct
    19381 tttaagttgt tgtacatgat ggtgcttttg atagtagatt catcgctatc tgccaaaaac
    19441 aatcgcgcat caaatggtgt tccgggttca ttagccccaa gatgtccatt tacccctaag
    19501 cctagaattt gcaaatcgcg ctcattttca gccaaaattt tcttatagcg ggcaatttcg
    19561 tcagtaaagt cagctaggct tccgtccaat aattcgactc tttttggcat tttgttaatt
    19621 aaatcataga atttttggtg catatatgtg taaacagtga aggaagcatc gcgtttagcc
    19681 acatactcat ccaaattcat taaaaatact ttttcgattg gaatttcgcc tgcattaatt
    19741 ccttttacaa gtccctcgaa cattccatca aaacttgctc cggtagttgt attaattacc
    19801 ggattatcat tttcgttaat gacttgtttg acaacttcga gcgcttcttg tgacatttct
    19861 tcgtatgttt ttgtcctgat taatttcata aaaatcctcc tctataagct ttcattaccc
    19921 gaactatttt ttctaaagca aaccatgctt tagaaaactt gcgtataacc catcttcttc
    19981 aacggatttt gttacttcat ctgcaagtaa ttttagctct tctttggcat tccccattgc
    20041 aataccagtt tcacaataag taagcatttc tgcatcattc attccatcac caatgccaat
    20101 cgtcgtgttc ttctctgcac cgatatgcgc tagtagaaat tcaatcgctg ttgctttatg
    20161 aatatctggc accatcagct ctccactatc gtccccaaaa ataggaactg tgcaatgtaa
    20221 aacttcaaat ttgccactaa attcattttt tatttcttca aaaggtacat ttttattttc
    20281 taggaaacaa gctttattga catctgtgcg gtaaagattt gtttcaccgt aagttaggct
    20341 tgtcatgaaa ggatgcggat tattggcttt tttctcgcgc gcaatcggat cattctcgac
    20401 atcgccataa actaagctat ctaaatgagc ttctagattt tcgcttgcaa atagcccacc
    20461 gtttgactcc aaatagaaat ctaagttctt ttcatgaaag aaatctacca tatgaacaac
    20521 gtcttcattc gctacttttt tatggtaaac aatttcatcg tctacttcga tatagccacc
    20581 acctgcacca ataatcccat caaacccgat ggataaaatc gagtcataca gctctggttt
    20641 agaacgacca gtgcatagat agacttggtg accattgttt ctagctttta ttatcgcggt
    20701 tttggcagat gctggaacaa gcccatcatc cgttacaagc gtaccatcta catctacaaa
    20761 tactattttt ttcgtcatgc aatacctctt ttcgtatgtt aatagtttaa ttatagcatt
    20821 tctttaataa gaaggcgccc catcgcgtaa caaaaaagca agattcccat tttcaggaaa
    20881 ccttgctttt aatttattta gttttctaaa gccattaatt tttgattatc atcaagagct
    20941 gactcatgtg catcatggcg ttttttcaag tggctcatag atagatatag taagccaaca
    21001 catgcgatca tgatgattgt aagaacgagc atcgacatac tgtatacatt tggtcccata
    21061 cctgctgcca gtgactctct gaacgcataa atcgagtaag tcattggtaa gaacggatgg
    21121 attaaattga agaaccatcc agtaagtggc attgggaatg ttccgcctga tcccgctaat
    21181 tgaacaatga gtaataccat cgcgataaaa cgacctggat tatcaaatgt catggcaagg
    21241 agcatgataa ggaacatgta agcaagagct gtaataatcg ctgttccaaa gaattcaaca
    21301 atgttatctg gtcttagtcc tagtgctatc atgataccac cttcaagaag tgccatcgca
    21361 actgctgcga caaaaccaag tgatagttta cttaaccacc atttataagc tggttgtcct
    21421 tccatcgaaa cacgtctgat tggcatgatg aagttaaaga caagtgcacc aacatataga
    21481 gctagtgata acacatatgg tgctaatgca tgtccgtagt tacttacgtg cgtatattca
    21541 ttatgtgcga gttttgttgg agcagcaatc atgttaaatg ttttgtctgt tgcttttgta
    21601 tctttgactt gttgtgctcc gtctgctagt ttgtctgtta attctgtgct gccgtctgtt
    21661 aatttagtaa gtccatctcc taattggaag gaaccattcg ctaatttgga agaaccatcg
    21721 gcaattttgg aagagccgtc tgctagttgt cctacgcctg aaactagttt tggtgagtta
    21781 gctgatagtt ggtttagacc gcctactaat tggcttgaac ctgcttgtag ttgattaacg
    21841 ccacctgcaa gtgttggaac ttttgcagct aattggtttg ttccgccttg taattctgtt
    21901 gctcctgagc gtaatgcgcc ggaattgctt gcaagttgat taccaccatc atttaactga
    21961 cttagcccgt tttccatatt tgcactaccc gcagcgagtt gtcctacgcc agaagttagg
    22021 gttggcactt ggttgttaag ttgatttgtt ccagcaacta atttggcatt cccagcttgt
    22081 gctgatttga gtccagcagt tagttggttc gcgccgccaa gtagagtttg actacctgag
    22141 ccattaattg cttggtgaat actgttaaat gcttcgtttg ttccaccgtg aactgcttga
    22201 taaccagcgg aaattttcgc tacgccagtt tgcaattctg ttacttgtgt ttgaattgcc
    22261 gctaaatcaa gacctgataa gccgctttgt agttgttcta ctgttgctac ttgtgtagcg
    22321 gatttttgtg tttctttatc taaatcggct tgaatagcat caataatttt ttgtttatct
    22381 tctgcactca cgccagctgt cgcattaatt tttgatttaa ttgcttcagc atcgaagttc
    22441 gcattagatt taataaatgt taagccattt tgtaggtcgc ttaaactttt ttgtagtgca
    22501 gcgagttgtt ttgcaagtgc tgcatcttcc ccgttgacac ttttatttaa ttgatcaatt
    22561 ccttgttgta aatcgttcat gccttgtttc aattgggcaa ttttgccttg tttatcagtt
    22621 aaattaccgt ctaattcttt aagtcctgct gaaagtttgt tacttccatc gactagtgaa
    22681 tctaagccag ttgctaagct tttttggccg ttatttagtt gtgttatgcc cgatgctaga
    22741 gttggtacac tgccattcat cttatttaat ccatctgaaa gtgcagtaga accagtgtaa
    22801 gcttggttaa ttccgcctgc tagtgtatct acaccagatg tataggtaga aactccgcta
    22861 gctaatttcg ttgccccgcc gtcaagcgct gctacaccgt cttttagtgg tcctactcca
    22921 gctgcaagtg tcgaaacacc atcatttaat ttatccccac cagcggccgc agtgtttaca
    22981 ccatctgtgt aagttttcaa gccaacttct aacgtattag cgccatcttt gaacgttaaa
    23041 gagctatctg cgagcgtttt taaattagta gaaatcgttt tattaccttc ttgtgatttc
    23101 acaaggccat ctttaatttt tccagagcca tctgcagctt gggcgaaccc ttcaccagac
    23161 tctttaattt tatcaaaaat tgcttccgcg tatgattttg ttacttcagc ggaaacctcg
    23221 cttttcagtt gtttggctcc ttgttcactc acgacttgac ctaaatagtt cagcgagccg
    23281 tttgttttat aggataattc catttttttc ggatctttat ctaaaacgga tgctgcattt
    23341 ttagagaaat cttttggaat cgtgacaatc atataatatt tgccatcttt taagccttgt
    23401 tccgcatctt ctttggaaag aaaattccaa tcaagttctt tgttgctttt cagttttgtg
    23461 actaactgat caccaacatc cattgtttgg ccgttataat caaccggttt atcattgtta
    23521 actaccgcta ctggtaaatc ccctgttttg ccgtacggat cccagacgga ttttaagaaa
    23581 aagcttgcat ataaaagtgg aataaacaga ataactacaa atgataaaag tagtattttg
    23641 tttttaaata atttcttcca ctcatttttt accatatcca ttttattacc gcacttcttt
    23701 cttttaaaga tttattacgc ttcgttccaa tctatgatag tggttcgttc tttcccaata
    23761 acttgctcta ctaaaacaga taatttttgt gagtataaat aattagcgta ttctttatca
    23821 gcgtttctaa aagcacttgt aatggtgtga ataccggact ctgcaaattc atgatagtca
    23881 gagaaaacag tgtggattaa gtcggaatct gggtatgtat cgattttccc ttccactgct
    23941 tctacaatat ccagcaaatt aatttcttca gggtctttag caagcgtgaa accaccgtta
    24001 ttacccgaaa ctgaattaat cagcccgcta acgactagct tcctcaaaat tttactaata
    24061 taagacggcg acgaatcacg caaacggtga tgaatagtta cggaagaaat gggaacatct
    24121 accttctggg tgtacaacat cgtcataata caaaatacct gatccatact tttgctcaac
    24181 ttcataataa aaatcctccc tcttcccatt attacctttc aatatcctta atggacattt
    24241 aacatctata tacaatacac ccattttttt taaagtgcaa gagtttttta ctaaaaatgg
    24301 a
//
LOCUS       DASEAA010000026        23773 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.026, whole genome shotgun sequence.
ACCESSION   DASEAA010000026 DASEAA010000000
VERSION     DASEAA010000026.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23773
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.026"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            89..1174
                     /locus_tag="U0342_000875"
     CDS             89..1174
                     /locus_tag="U0342_000875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional 3-deoxy-7-phosphoheptulonate
                     synthase/chorismate mutase"
                     /protein_id="HEM2422231.1"
                     /translation="MVNTNLEELRTQVDQLNIDLLELISKRANLVQEIGKIKGTQGSL
                     RFDPLREREMLNTILAANEGPFEDSTVQKLFKEIFKAGLELQEEDHSKALLVSRKNKK
                     EDTIVTVKGLPIGNGEPVFVFGPCSVESYEQVAAVAESIKAKGLKLIRGGAFKPRTSP
                     YDFQGLGLEGLKILKRVSDEYGLGVISEIVTPADIEVALDYVDVIQIGARNMQNFELL
                     KAAGRVDKPILLKRGLSATIEEFIGAAEYIMSQGNGKIILCERGIRTYEKATRNTLDI
                     SAVPILKKETHLPVMVDVTHSTGRKDLLLPCAKAALAIEADGVMAEVHPDPAVALSDS
                     AQQMDIPEFEEFWNAILASNLVPHKIK"
     gene            1409..2416
                     /gene="ccpA"
                     /locus_tag="U0342_000876"
     CDS             1409..2416
                     /gene="ccpA"
                     /locus_tag="U0342_000876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="catabolite control protein A"
                     /protein_id="HEM2422232.1"
                     /translation="MNVTIYDVAREANVSMATVSRVVNGNPNVKPVTRKKVLDVINQL
                     GYRPNAVARGLASKRTTTVGVIIPDISNVFYAELARGIEDIATMYKYNIILSNSDENE
                     DKELQVLNTLLGKQVDGIIYMGERISEQLQEEFDRSPAPVVLAGAVDMENKFASVNID
                     YKQATKEAVKRFVDNGHKQIAFVSGSLNEPVNREMKLAGYKEALEEAGISYQEDYIIE
                     AKYNYNAGVKVWAELSALSKKPNAVVVADDELAIGILNAALDAGIKVPEDLEVMTSNN
                     TKLTLMSRPQLSTIVQPLYDIGAVAMRLLTKLMTSEEVDEKTVILPHSEKLRGTTKEK
                     K"
     misc_binding    2470..2678
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            2738..3997
                     /locus_tag="U0342_000877"
     CDS             2738..3997
                     /locus_tag="U0342_000877"
                     /EC_number="6.1.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine--tRNA ligase"
                     /protein_id="HEM2422233.1"
                     /translation="MNIIDELEWRGAIYQQTDEEGLRKWVEEKQISLYCGIDPSGDSM
                     HIGHLIPFMILRRFQNAGHRPIILVGGATGTIGDPSGKKEERKLQSMEQISKNVESLR
                     VQLGKIFDFEGNSAASMVNNYDWTKDVSILDFLRDYGKEFNVNTMLSKDIVASRLEVG
                     ISFTEFAYQILQAMDFNHLYEFNDCRLQIGGSDQWGNITAGLDLIRKKQGENAKAFGL
                     TIPLLTKADGTKFGKSEGGAIWLNPEKTTPYEFYQFWINTDDRDVVKYLKYFTFLTEA
                     EIDELAKQVETEPHLRAAQKTLAAEMTKFVHSEEALEQALKISKALFSGDVKALTADE
                     IEQGFKDVPTFVAEDTEANLVDWLVTLGIEPSKRQAREDVANGAIYINGERQQDLEKI
                     MDASDRIENKFTIVRRGKKKYFLVSYK"
     gene            complement(4097..4699)
                     /gene="rpsD"
                     /locus_tag="U0342_000878"
     CDS             complement(4097..4699)
                     /gene="rpsD"
                     /locus_tag="U0342_000878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S4"
                     /protein_id="HEM2422234.1"
                     /translation="MARYTGPSWKVSRRLGISLSGTGKELERRPYAPGQHGPTQRKKI
                     SEYGLQQAEKQKLRHMYGLTERQFKNTFNKAGKLQGKHGENFMILLEQRLDNIVYRLG
                     LARTRRAARQLVNHGHITVDGKRVDIPSYQVSVGQVISVREKSAKNSAIAESLEVSSF
                     VPEYVTFDAEKLTGSLNRLPERSELAAEINEAFIVEFYSR"
     gene            complement(4911..5399)
                     /locus_tag="U0342_000879"
     CDS             complement(4911..5399)
                     /locus_tag="U0342_000879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAF domain-containing protein"
                     /protein_id="HEM2422235.1"
                     /translation="MIEIKKMTGTKEENYALALKQVQAMIAGEPNLIANLSNVSSILN
                     QALSDINWVGFYLLEKETNQLVLGPFQGLPACIRIPLGKGVCGSAASDQKTYIIENVH
                     DFPGHIACDAASNSEIVLPIVKNNQLLGVLDIDSPLFNRFDEVDQLWLEKIRDAITQE
                     IN"
     gene            5693..7408
                     /gene="ezrA"
                     /locus_tag="U0342_000880"
     CDS             5693..7408
                     /gene="ezrA"
                     /locus_tag="U0342_000880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septation ring formation regulator EzrA"
                     /protein_id="HEM2422236.1"
                     /translation="MYYMLIGFIIVVIAVIGAGYILKRKHYQRINELEEKKIKLRERP
                     VIDELSKVKKLKLTGQTEALFESWRSSWDEIETRLFPDLEEVLLEAEMNTDRYKFRSA
                     THAENDIEQMLVVIEKQMDQILGGLKELLISEEKNAKESRATKEKFAELRREVLTRGF
                     KLGETLPYIETKLSELSESLNSYDSLTDQGDHLEAREIVIVVQKEMQVIEAQMERIPS
                     LLHETDTILPEEMTKLRAGYEEMVRKGYYLAQMELDKEISRMKNQIDKMKKNVINLDL
                     DEAEQGVEELHNEIDLFYDTLEHEAEARHFVKENHSPTSDKLQRQNAVSDALAEQITE
                     VKQTYHVAEDDLAVYLKTSAKLSEAKENFEQLTALIASGEIAYSAAQDTLKEIDAALI
                     TISAEQDKFAEELRSLRKDELEARDDAERMRRAIITLDRKMERERLPGLPEEYLSLRE
                     HMGESINALEKRLEEKPLNMKAVSQDWRIAEEDLTHLTEKAEEMMENVRLVEHVIQYA
                     NRYRLRNKELADELVQAENHFYNDYQYKKALEIAVTALEKVETGAFKKVEKAYESKVS
                     VDDIE"
     gene            7536..8675
                     /locus_tag="U0342_000881"
     CDS             7536..8675
                     /locus_tag="U0342_000881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2422237.1"
                     /translation="MIYFDNSATTKPNAAVLETYTKVASNYFANPSSLHRFGAKSKEL
                     LDASRKQIAAMVSALPEEIIFTSGGTEGNNLAIKGLVYSYQNRGKHIVTSSIEHPSVR
                     MVMEELEQEGFTVTYLPVDKNGVIKMEALKAALTDETILVSIMGVNNEVGSIQPLHEI
                     GEMLKLLEHTFFHVDFVQGIGKIPLALNENAIDLLTFSGHKFHALRGTGILFKRKNVH
                     LHSEILGGGQEMGYRSGTENLAGNVALAKALRLTLENEPRKEALIEIRDYLLTEIAQM
                     SDMTVHTKQSVAAPHIVCFSAKGHRGEILVHALEKEDIYISTTSACSSKQKLASSTLK
                     AMGVTDEEATGAVRVSLSYENRLSEAKIFIQKLQEIIENLNKVVK"
     gene            8677..9888
                     /gene="thiI"
                     /locus_tag="U0342_000882"
     CDS             8677..9888
                     /gene="thiI"
                     /locus_tag="U0342_000882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 4-thiouridine(8) synthase ThiI"
                     /protein_id="HEM2422238.1"
                     /translation="MEFDRMLIRYGELSTKGKNRKQFVTKLAQNVKRAMTDLPEVRIH
                     GERDRMYIILNGADYQLAEERLKPIFGIQSFSPAVRVNLDVEEVKAAALALVQDAHEE
                     NGTFKVAARRSHREFPLDSNEINQEIGAYVLQNMEDLTVNVKNPDVKLTIDVRKEGVF
                     LSCRTILGAAGLPVGSSGRAMLMLSGGIDSPVAGYLAQKRGVEIEAVHFHSPPYTSEQ
                     AKQKAVDLAAKLAKYSGQVQMHIVPFTEIQEVIKQQIPESVIMTVTRRMMLRITDELR
                     RRRNGLAIVNGESLGQVASQTLESMLAINAVTATPIIRPVVSMDKNEIIQIAQKIDTY
                     NLSVQPFEDCCTIFTPPSPKTKPKLDKIEHYESFTDFEALIAKALDNIETISVNVAET
                     AQVKDEFADLF"
     gene            10059..11090
                     /locus_tag="U0342_000883"
     CDS             10059..11090
                     /locus_tag="U0342_000883"
                     /EC_number="1.2.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyl-gamma-glutamyl-phosphate reductase"
                     /protein_id="HEM2422239.1"
                     /translation="MKVSIIGATGYGGLELIRLLHQHASVDIATLHSFSAQSETLATF
                     YPHLKDLEASPLEKINSAEIIEKSDTVFIATPSGIAKDIALPYVDAGLNVIDLSGDFR
                     LKDRQLYEKWYGKSAAPIEYIAKAEYGLAEFRDKKEARFIANPGCYATATLLGIAPLV
                     ISQLIDPTSIIVDAKSGISGAGKVPSASTHFTETNENMTLYKMNSHQHIPEIMQQLTK
                     WDETIPAIQFSTSLIPITRGIFTTIYVKPKNPITQKELHTLYKSTYENAPFVRIQPEN
                     VYPTVKQVTASNYCDIGLAYNEKTNVITIVSVIDNLVKGAAGQAIQNLNIMANFAESD
                     GLRFIPVYP"
     gene            11106..12302
                     /gene="argJ"
                     /locus_tag="U0342_000884"
     CDS             11106..12302
                     /gene="argJ"
                     /locus_tag="U0342_000884"
                     /EC_number="2.3.1.1"
                     /EC_number="2.3.1.35"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional glutamate
                     N-acetyltransferase/amino-acid acetyltransferase ArgJ"
                     /protein_id="HEM2422240.1"
                     /translation="MELVKGNIASPKGFYADGKHAGLKRKRNDIGWIYSEVPANAAAV
                     YTMNQMQAAPIFVTKDSFQSNAKLQAIIVNSGNANACTGNQGMLDALAMRAQTAEKLD
                     IPLDYVAVASTGIIGDMLPMDKINAGIEMLEKQTGNAADFEEAILTTDTFQKQISFQT
                     EIGGRKVTMSGVAKGSGMIHPNMATMLAFITTDAAIPAELLQKLLKIKVDKTFNQITV
                     DGDTSTNDMVVVMANGCAENSMLQEGTADFAKFADMFQAVTEHLAKSIARDGEGATKL
                     IEVQVNGATKTEDARMIAKKIVSSSLVKTAAFGGDGNWGRIICAIGYSGGRFAPDNIT
                     IKIGGIEILNHSSQTIFNQQALDAYLEEEHIIIDVDLHIGLESGTAWGCDLSYEYVKI
                     NACYRT"
     gene            12315..13067
                     /gene="argB"
                     /locus_tag="U0342_000885"
     CDS             12315..13067
                     /gene="argB"
                     /locus_tag="U0342_000885"
                     /EC_number="2.7.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylglutamate kinase"
                     /protein_id="HEM2422241.1"
                     /translation="MENTIVVKLGGVASDNLTEDFFQQIIQWQAANKKIVLVHGGGHY
                     ITKMMKSLAIPVETKNGLRVTNKATLEVTKMVLIGQVQPAITTAFQKRNISVIGLNAG
                     DTGLLEADFLNDANLGFVGKITKVKTDLIEQLLSENIITVIAPLGINSEYDWLNVNAD
                     TAACEVASALQAEALYLLTDVPGVKKGSEIIGEIATDEIEKLQNAGVIKGGMIPKLAS
                     AAFAAENGVGKVIITDSLNTSGTKIKNKVAIG"
     gene            13064..14224
                     /locus_tag="U0342_000886"
     CDS             13064..14224
                     /locus_tag="U0342_000886"
                     /EC_number="2.6.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetylornithine transaminase"
                     /protein_id="HEM2422242.1"
                     /translation="MKHVFPTYKRFPIDLVNGTGTVVTDKNGKTYLDFTSGIAVCNLG
                     HCPANVAEAVQQQLTNIWHTSNLYECALQDSVAELIADGKDRLVFFCNSGTEANEAAL
                     KLARKYTGKEKIITFEKSFHGRTFGSMSATAQAKIHQGFGGLVPGFTYVPYNDIEAFR
                     AEIDEHTAAVMLEVIQGEGGVIPANAAFLLEVQLLCKKMGVLLIIDEVQTGLGRTGTL
                     YGFEQIGLEPDIFTLAKGLGNGLPIGAMVGKANLSSAFGPGSHGSTFGGNKLALAAAK
                     EILRTMKQAGFLEEVNAKADYFRYLLEVHLEALDNVSVIRGGGFLIGIELENTAEPVV
                     TELRDKGLLILTAGANVLRILPPLTVSYAEIDQAIYLLKSVLENQLIGSEEG"
     gene            14221..15171
                     /gene="argF"
                     /locus_tag="U0342_000887"
     CDS             14221..15171
                     /gene="argF"
                     /locus_tag="U0342_000887"
                     /EC_number="2.1.3.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ornithine carbamoyltransferase"
                     /protein_id="HEM2422243.1"
                     /translation="MTMYAKNNTAGKDMLSLLEWNKEELTDIIKLAVAMKTNPAHYSH
                     ILSGKILGMIFDKPSTRTRVSFEAGILQLGGQAIVMSSKELQIGRGEPIKDTAHVMSE
                     YIDAIMIRTFSHEKVEELAYHAEIPIINGLTDLHHPCQALADLMTIYEWKDQLEGVKL
                     AYIGDGNNVCHSLLLAGAMVGIDIRLAMPKGYEVDETILAKAENLAKQSGGKIFVTED
                     PKLAVTDADFIYTDVWTSMGQEDENAKRLADFGEKYQVNAELVSGAKPDYHFLHCLPA
                     HREEEVTAEIIDGNHSVIYQQAGNRLHAQKALLAAILEAK"
     gene            complement(15203..16006)
                     /locus_tag="U0342_000888"
     CDS             complement(15203..16006)
                     /locus_tag="U0342_000888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM2422244.1"
                     /translation="MAKTIFYFSYRKTEELHAKAKELKKITTDYGYELTDDYQKANVI
                     ISIGGDGAFLKSVRETGFRQDCLYAGIALTEQLGQYCDFHINQLDEIIKAAIEDRWLV
                     RRYPTIYGTVNNTKAFYVLNEFNIRSSIIRTLTMDLYINDSHFETFRGDGMVISTPTG
                     STAYNKSVNGSIVDPLLPSMQVSELASINNNKFRTLGSSFILSPKRKLRIEIASEEGN
                     NEFPMIGMDSEALSIQHVHEVNLEVGDRFINIIKLPKNSFWDKVKRNFL"
     gene            16185..17198
                     /gene="sppA"
                     /locus_tag="U0342_000889"
     CDS             16185..17198
                     /gene="sppA"
                     /locus_tag="U0342_000889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="signal peptide peptidase SppA"
                     /protein_id="HEM2422245.1"
                     /translation="MNAKRWIALGIVFALLLVSALAKFTSSQIASKEDSSPTFVESLF
                     ADTGELTETVIEEGGNDTIAVLSVDGTIQDTGDSGSLFSEAGYNHSFFMQQLEQVRND
                     DNIQGVLLYVNSPGGGVMESAQIRDKILQIQKERNIPFYVSMGSMAASGGYYISAPAD
                     KIFASKETLTGSLGVIMQGYDYSELMKKLGVSDNTIKSGEYKDIMSGTRPMTEDEKKI
                     MQSMIDDSYNEFVKVVAQGRGMTVEQVRKIADGRIYDGRQAKENGLIDEFGYQEDALE
                     ALKKEQGLAGATVIQYDAPGDFSSLFSVAAQKISGQNADISQLIKLTGTLKAPRMMYL
                     YGE"
     gene            17218..17754
                     /locus_tag="U0342_000890"
     CDS             17218..17754
                     /locus_tag="U0342_000890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RDD family protein"
                     /protein_id="HEM2422246.1"
                     /translation="MANENVAFESKRQVYHYEPPIQKEEAIPKQYFAGFWIRFLAYLV
                     DLVVIAALKGIIINPIFRVSGMGMDDSFFTFYWGMTTIIFLAYFILLTKFFGQTLGKM
                     LFGLRVVKLDGEKLTWLTVLFREGAMRFVLKTIWPLYVVCAFTPNKQGIADFFESTSV
                     VHTGYLELDEKWVNGAKK"
     gene            17815..18312
                     /gene="tpx"
                     /locus_tag="U0342_000891"
     CDS             17815..18312
                     /gene="tpx"
                     /locus_tag="U0342_000891"
                     /EC_number="1.11.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol peroxidase"
                     /protein_id="HEM2422247.1"
                     /translation="MTQVTFKHNPVTLVGTERKVGDKAPNFTVVNRDLEEVTLHDYDG
                     KVRLISVVPSIDTSVCSTQTRKFNEEASNLDNTVVLTISVDLPFAQKKWCAAEGLPNA
                     ITLSDHRDLSFGEAYGVIMKELRLLARSVFVVNAAGEIVYTEVVPEGSDHPNYEAAIE
                     AAKKA"
     gene            18503..19501
                     /locus_tag="U0342_000892"
     CDS             18503..19501
                     /locus_tag="U0342_000892"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2422248.1"
                     /translation="MANEATQELFQVLDNTAIILQNELEISYLEAVYETGENLFQKEV
                     LQKEELSSEKQLKLQASYESIELENFSNEEIRKGLQLALLKGMKHGIQVNHQMTPDSI
                     GFIVAYLLEKVIQKKKNVSILDPACGTANLLTTVINQLELKGDVDVHASGVDVDDLLI
                     SLALVGADLQRQKMTLLHQDGLANLLVDPVDVVISDLPVGYYPDDENAKTFELCREEG
                     HSFAHFLFIEQGMRYTKPGGYLFFLVPDAMFGTSDFAKVDKFIKKNGHIEGIIKLPET
                     LFKSEQARKSILILQKADVDVKPPKEVLLANLSSLTDPSVTAPILAEIENWFKRKR"
     gene            19525..20718
                     /locus_tag="U0342_000893"
     CDS             19525..20718
                     /locus_tag="U0342_000893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetate kinase"
                     /protein_id="HEM2422249.1"
                     /translation="MEKTIAINAGSSSLKFQLYDMPSERVITAGIVERIGLKDSIFTI
                     TVDGEKIKEIIDIPDHEIAVQMLLEKLINHKVIGSYDEITGIGHRVVHGGERFPESVY
                     IDDQVIKDIEALSELAPLHNPANVTGIKAFRKILPDVVSVAVFDTAFHQTMPPASYLY
                     SLPYSYYEDYGIRKYGFHGTSHKYVSERAAELLGRPVEELRLLTCHLGNGASIAAIEG
                     GKSMDTSMGFTPLAGVSMGTRSGNIDPALIPFIMEKTGKTAEQVLDVLNKESGMLGVS
                     GISSDLRDLEDEAAKGNDRAELALQVFVDRIHKYIGSYAARMNGVDAIIFTAGIGENS
                     SYIREKVLRGLEFMGVYWDPALNQVRGEERFLNYPHSPVKVIIIPTNEELMIARDVET
                     IKNNH"
     gene            complement(20770..21234)
                     /locus_tag="U0342_000894"
     CDS             complement(20770..21234)
                     /locus_tag="U0342_000894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="universal stress protein"
                     /protein_id="HEM2422250.1"
                     /translation="MLQQYERVLVAVDGSKEAERAFQKAIQVANRNDAALGLVHVIDT
                     RAFSSVANYDTSMADKATEYADELLSGYKEDALKAGVTKVESYIEYGSPKTAITKEAA
                     KAFQADLIMCGATGLNAVERLLIGSVSEYIIRHSPCDVLVVRNDVPDYKEEK"
     gene            21473..22585
                     /gene="ald"
                     /locus_tag="U0342_000895"
     CDS             21473..22585
                     /gene="ald"
                     /locus_tag="U0342_000895"
                     /EC_number="1.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine dehydrogenase"
                     /protein_id="HEM2422251.1"
                     /translation="MLVGVPKEIKNNENRVAMTPASVFSYVNAGHTVYVEKDAGIGSN
                     YQDADFVQAGAKIVETAKEAWDVDMVVKVKEPIASEYTYFKEGLLLFTYLHLANEPTL
                     AKALMESKVNSVAYETVELADHTLPLLSPMSEVAGRMAAQIGAQFLQRTNGGMGVLLG
                     GVPGVEKSEVVIIGGGIAGTNAAKIAAGLGANVTILDMNLKRLRELDDIFGNQVQTLM
                     SNDFNIETAVKKADLVIGAVLIPGAKAPKLVKEHVIKQMIPGSVLVDIAIDQGGIFET
                     TDHVSTHDNPTYEKYGVLHYAVANMPGAVPRTSTLALTNATLPFGLKLANQGLKAAVQ
                     NDPFLLRGLNTYQGHITYKAVADSLDLPYTDSKELI"
     gene            complement(22628..23725)
                     /locus_tag="U0342_000896"
     CDS             complement(22628..23725)
                     /locus_tag="U0342_000896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM2422252.1"
                     /translation="MEKNIDVLQNWLKDQGAEVAFLTDPENIAYFSGYHSEPHERVLG
                     LAVFPDSEPFLFTPALEVEDVRGGDWTHPAYGYNDTENPFTIIADEIKKRVANPSKFA
                     IEKKHMSVDRYEQLGGLFSGSSFIPIEHKIEQIRLIKTEAELKILKEAALLADYAVQV
                     GVNEIAEGKTEAEIVAKIEYEMKKKGVTAMSFDTMVLTGKNGALPHGTPGETKIKKGD
                     LVLFDLGVVHKGYCSDITRTVAFGDISDEQKKIYDTVLEAQIAAVEKVKDGVKASEID
                     LTARNIIREAGYGDYFPHRLGHGLGASVHEFPSITETNNMELQENMVFTIEPGIYVPG
                     VAGVRIEDDLVVTKDGVQVLTEFPKTLQVID"
BASE COUNT         7858 a         4034 c         5040 g         6841 t
ORIGIN      
        1 gtataaaagt ggattcgtga caaattatct gttttcctct ataatgagaa ataatcttgg
       61 agcagatttt tagaagggtg gaagttaaat ggttaataca aatttagagg aacttagaac
      121 acaggtggat caattaaata ttgatttgct agaattaatt agcaaacgcg ctaatttggt
      181 acaagaaatt ggcaaaatta aaggaactca aggttctctt cgttttgatc cattacgtga
      241 aagagaaatg cttaacacga ttcttgcagc aaatgaagga ccttttgaag atagtacggt
      301 tcaaaaatta tttaaagaaa tttttaaagc gggattagag cttcaagaag aagatcactc
      361 taaagcatta ctcgtttcta gaaaaaacaa aaaagaagat acgatagtta cagtaaaagg
      421 attgccaatc gggaatggcg aaccagtatt tgttttcggt ccatgttcag tggaatctta
      481 tgaacaggtt gctgcggtcg ctgaatccat taaagcgaaa ggcttaaaac ttattcgtgg
      541 cggcgcattt aaacctcgta ctagcccata tgacttccaa ggattaggtt tagaaggact
      601 gaaaatttta aaacgtgtat ctgatgaata cggtttaggt gttattagtg aaatcgttac
      661 gccggctgat attgaagttg cacttgatta tgtagatgtt attcaaattg gtgcaagaaa
      721 catgcaaaac ttcgaattac taaaagcggc tggccgtgtg gacaaaccca ttttactaaa
      781 acgtggttta tctgctacaa tcgaagaatt cattggtgct gctgaatata tcatgtcaca
      841 aggaaatggc aaaatcatct tatgcgaacg aggtatccgc acatatgaaa aagcgacaag
      901 aaatacactt gatatttctg ccgttccaat tttgaaaaaa gaaactcatt taccagttat
      961 ggttgatgtg acgcattcta ctggtcgaaa agatttatta cttccatgcg caaaagctgc
     1021 tctagctatc gaggcagatg gcgtgatggc tgaagttcat ccagatcctg cagttgcatt
     1081 atcggattct gcacaacaaa tggatattcc tgaatttgaa gaattctgga atgcaatttt
     1141 agcaagtaat ttagtaccac ataaaataaa gtaacatcaa aaaaccttgg gattccaagg
     1201 ttttttgttt tgctattaac aactcatatt ctatcggcat ttaattttgt gtaataatgc
     1261 cgttttgata tgaaaataaa tgaaaataaa gagtaaaaac aattgcatat cgaaaaaagt
     1321 tatcgtatta ttaaaggaag gctagtttgt ttacgtttac aatggtaggt agagccatta
     1381 aaataatgaa tatggagagt gaatagagat gaatgtaaca atttatgatg ttgcaagaga
     1441 agcgaatgtt tctatggcaa cggtatctcg ggtagtgaac ggcaatccga atgttaaacc
     1501 agtaacaaga aaaaaagtac tagatgttat taatcaatta gggtatcgtc ctaatgctgt
     1561 agctagaggc ctagcgagca aacgtacaac tacagttggt gttattattc cagatatttc
     1621 taacgtgttt tatgcagagc ttgctcgtgg gattgaagat attgcgacaa tgtataaata
     1681 caacattatc ctcagcaatt cggacgaaaa tgaggataaa gaacttcaag tacttaacac
     1741 gcttcttggt aaacaagtgg acggaattat ttacatgggc gaacgtattt cagaacaatt
     1801 acaagaagaa tttgaccgtt ctccagcgcc agtagtttta gcaggagccg ttgatatgga
     1861 aaataaattt gcttctgtaa acatcgatta caaacaagca acaaaagaag cggtgaaacg
     1921 ttttgtagat aatggtcata agcaaatcgc ttttgtaagt ggttctctaa acgagccggt
     1981 caatcgcgaa atgaaattag ctggttacaa agaagcatta gaagaagctg gaatttctta
     2041 tcaagaagac tacattattg aagcgaaata taactacaat gcaggtgtaa aagtttgggc
     2101 agaattaagt gccttgtcta aaaaaccaaa tgcagtggta gttgcagatg atgaactagc
     2161 tattggtatt ttgaatgccg cgcttgatgc tggaatcaaa gtcccagaag acttagaagt
     2221 aatgacaagc aacaatacga aattaacatt aatgtcacgc ccgcaacttt cgacaatcgt
     2281 acaaccttta tacgatatcg gcgccgtggc tatgcgtcta ctaacaaagt tgatgacgag
     2341 tgaagaagta gatgaaaaaa cagttatctt accacatagt gaaaaactac gtggtacgac
     2401 taaagaaaaa aaataagttg acagcatttt taacggtatg ttataaatgt atgtatactt
     2461 ttcataacga aaatgactat gaacggacga agtagttgct tattcttatt cctagagagc
     2521 tagtggttgg tggaaactag tagaggtaag tagacgaatt acatcccgga gtcacgctgc
     2581 gcaggataat ggcgcagccg gtgttgagcc gttatttttt gaagtaggat ttattcctaa
     2641 aagtagggtg gtaccacgtt aattaatacg tcccttcgct aaactgttta gcggaggggc
     2701 gttttttatg tccaaaaata aaaggagaat gatgaaaatg aatattattg atgaattaga
     2761 gtggcgcgga gctatttacc agcaaacaga tgaagaagga ttacgcaaat gggtagaaga
     2821 aaaacagatt tctttgtact gcgggattga tccatctgga gactcgatgc atattggtca
     2881 tttaattcca ttcatgattt tacgccgttt ccaaaacgct gggcaccgtc cgattatttt
     2941 agttggtgga gcgacaggaa ctattggcga tccgagtggt aaaaaggaag agcgtaagtt
     3001 acaatcaatg gaacaaatta gtaaaaatgt ggaaagtttg cgcgtgcaac ttggaaagat
     3061 ttttgatttt gaaggtaatt ctgcggcgag catggtgaac aactatgatt ggacaaaaga
     3121 tgtgagtatc cttgatttct tgcgtgacta tggaaaagaa ttcaacgtga acacgatgct
     3181 ttcaaaagat atcgttgcta gtcgtttaga agtagggatt tcattcacgg agttcgctta
     3241 ccaaatttta caagcgatgg actttaatca cttatatgaa tttaatgatt gccgtttgca
     3301 aattggtggt agtgaccagt gggggaatat tactgctgga cttgatttga ttcgtaaaaa
     3361 acaaggcgaa aatgccaaag ctttcggttt aacaattcct cttttaacaa aagctgatgg
     3421 aacgaaattt gggaaatcag aaggcggggc aatttggtta aatccagaaa aaacaacgcc
     3481 atatgagttt tatcaattct ggattaacac agatgatcgt gatgttgtga aatacctgaa
     3541 gtactttaca ttcctaacag aagcagaaat tgatgagtta gcaaaacaag tagaaacaga
     3601 accgcattta cgagctgcac aaaaaacgtt agcggcagaa atgaccaaat ttgtgcatag
     3661 tgaagaagcg ttggaacaag cacttaaaat ttcaaaagca ctatttagtg gtgatgtaaa
     3721 agcgctgact gcggatgaaa ttgaacaagg cttcaaagac gttccgacat ttgttgcaga
     3781 agatacggaa gcaaacttgg tagattggtt agtaacactt ggtatcgaac cttccaaacg
     3841 tcaagcgcgt gaagatgttg caaatggagc tatttacatt aatggggaac gtcagcaaga
     3901 tttagaaaaa atcatggatg caagtgaccg gattgaaaat aaatttacaa ttgtgagacg
     3961 cgggaagaaa aaatacttct tagtttctta taaataatag ggaaagcact cgtttttaaa
     4021 gacgagtgct tttttgtgca taaaaaaacc ttacaaacac aaccgaagtc atgcattgta
     4081 aggtttttag ctctaattaa cggctgtaga attctacgat aaatgcttcg ttgatttcag
     4141 cagcaagttc agaacgttct ggtagacggt taagagaacc agttagtttt tctgcatcga
     4201 aagttacgta ttcaggcacg aagcttgaaa cttctaagct ttcagcgatt gcagagtttt
     4261 tagcagattt ttcacgaaca gagatcactt gaccaacaga tacttggtaa gaagggatat
     4321 ctacgcgttt gccatctaca gtgatgtggc catggtttac gagttgacga gctgcacgac
     4381 gagtgcgagc aagaccaaga cggtaaacga tgttatcaag gcgttgttct agtaagatca
     4441 tgaagttctc accatgttta ccttgtaatt taccagcttt gttgaacgtg tttttgaatt
     4501 gacgttcagt taatccatac atatgacgca atttttgctt ttcagcttgt tgcaaaccat
     4561 attctgagat ttttttacgt tgagttgggc cgtgttgacc tggagcatac ggacgacgct
     4621 ctaattcttt acctgttcca gaaagtgaaa ttcctaaacg acgggaaact ttccagcttg
     4681 gacctgtata acgagccata agagactcct ccttttattt gtttttggta taaaacaaac
     4741 gtgacgtaaa accaaatcag ggcagtttac cttcatatac catcaccata gcagccgccg
     4801 gttacgtgat ataccacaga attacatctg ggggtaaaca acacactcat tcattttact
     4861 caagctgcat tttacacatc ttccagtata gtatagttac tagtagcttg tcaatttatt
     4921 tcttgagtaa tcgcatcacg gattttttct agccataact ggtccacttc atcaaaacga
     4981 ttaaaaaggg gactatcaat atcaagcacg ccaagcagtt gattattttt tacaattggt
     5041 agaacgattt ctgaattaga agctgcatca caggcgatat gtccagggaa atcatgcaca
     5101 ttttcgatta tatacgtttt ttgatctgag gcagcagaac cgcacacacc tttacctagt
     5161 ggaatgcgaa tgcaagcagg caaaccttgg aaggggccga gtactaattg atttgtttct
     5221 ttttcaagta aataaaatcc aacccaatta atatcagaaa gtgcttgatt taatatagaa
     5281 gaaacattac ttagattcgc aattagattt ggttcgccag caatcattgc ttgtacttgt
     5341 tttaaagcaa gtgcataatt ttcttctttt gttccggtca tttttttgat ttcaatcatt
     5401 tttttatccc cacatttctt ttcaaataat gtctttagta tagcatgaac gacaagggat
     5461 ttcgggaaat ttgttttgta atagaataga ttttatttgc tttaaaaatt ttttcgttaa
     5521 acgcaagtaa ttctaggcaa atcgtggtaa aataaaagat gtgtataatg aactgaaaat
     5581 gaggaataaa atatactaca tatggaaaga tgtacataat tgaaaagatg tatgagcagc
     5641 acgagtgtgg ctgtttttct ttcacaagtt aacgttgatg ggaggatttt ggatgtacta
     5701 catgttaatc ggctttatta tcgtagttat tgcagtcatt ggtgcaggct acatattaaa
     5761 aagaaaacat taccaaagaa taaacgagtt agaagagaaa aagattaaac tcagagagcg
     5821 gccggttatt gatgaacttt caaaagtgaa aaaattaaaa ctaacaggtc agacagaagc
     5881 gctttttgaa tcatggcgtt cgtcctggga tgaaattgaa actagattat ttcctgattt
     5941 agaagaagtg ttattagaag cagagatgaa cacggaccgt tacaagttcc gttctgctac
     6001 acacgctgaa aatgatattg agcaaatgct cgttgtaatt gaaaagcaaa tggatcaaat
     6061 tcttggtgga ctaaaagagc tacttattag tgaagaaaaa aatgccaaag aaagtcgtgc
     6121 cacgaaagaa aaatttgcgg agttgcgccg agaagttttg acaagaggat ttaaacttgg
     6181 agaaacgtta ccatatattg agacaaaact aagtgaactg tcagaaagct taaatagcta
     6241 tgattcatta actgaccaag gtgatcattt agaggcacga gaaatcgtta tagtggttca
     6301 aaaagaaatg caagtaatcg aagcgcaaat ggagcgaatc ccgtcattac tgcatgaaac
     6361 agataccatt ttgccagaag aaatgactaa acttcgcgct ggctatgaag aaatggtgcg
     6421 aaaaggttat tatttagctc aaatggagtt agataaagag atttctcgca tgaaaaatca
     6481 aattgataaa atgaaaaaaa atgtaattaa tcttgattta gatgaagcgg aacaaggagt
     6541 agaagaatta cataatgaaa tcgatttgtt ttatgatacg cttgaacacg aagcagaagc
     6601 tcgccatttc gtgaaagaaa atcatagccc aacttctgac aagttacaac gccaaaatgc
     6661 cgtttcagat gcacttgctg aacaaattac agaagtaaaa caaacctatc atgttgctga
     6721 agatgatcta gcggtttatt taaaaacgag cgctaaattg agtgaagcaa aagaaaactt
     6781 tgaacaatta actgctctaa ttgctagtgg tgagattgcc tactcggcag cgcaagatac
     6841 attgaaagaa attgatgcag cgcttattac gattagcgct gagcaggaca aattcgctga
     6901 agaattgcgt tctttgcgta aagatgaact agaagcgcgt gatgatgctg aacggatgcg
     6961 tcgtgcaatt attacactag atcgcaaaat ggaacgagaa cgtttgccag gtcttccaga
     7021 agagtattta tcgctacgag agcatatggg ggaatccatt aatgcgcttg agaaacgttt
     7081 ggaagagaaa ccgctaaata tgaaagcagt aagccaagat tggcgtattg cagaagaaga
     7141 tttaactcat ttaactgaaa aagccgagga aatgatggag aatgttcgct tagttgagca
     7201 tgttatccaa tatgctaacc gctatcgatt gcgtaacaaa gaacttgcag atgaactcgt
     7261 tcaagcagaa aaccatttct acaatgatta tcagtataaa aaagcattag aaattgctgt
     7321 aaccgcgctg gaaaaagtgg aaacaggagc atttaaaaaa gtcgaaaaag cgtatgaatc
     7381 aaaagtaagc gtcgacgata ttgaataaaa acgtaaaaac aggtatttct atttttataa
     7441 taggaatcct gtttttttat gaaaatagta gttggaaagt gttggaatta tgataaaatg
     7501 gagagtggaa tattggggag gagaatttag tttttatgat ttatttcgat aatagtgcga
     7561 caacaaagcc aaatgcggcc gtacttgaaa catatacaaa ggtagcgagt aattattttg
     7621 ctaatccttc ttcgctgcat cgttttggtg ctaagtcgaa agagctgctt gatgcatcaa
     7681 gaaaacaaat cgctgcgatg gtgagcgctt tgccagaaga aattattttt acatctggtg
     7741 gcacagaggg gaataatttg gcgattaaag ggctcgttta tagttaccaa aatcgcggga
     7801 aacatattgt tacctctagc atcgagcatc cttctgttcg tatggtaatg gaagaacttg
     7861 agcaggaagg ttttactgtc acgtatttac cagtagataa aaacggcgtc atcaagatgg
     7921 aagcattgaa agctgcactc acagatgaaa cgattttagt gtctattatg ggcgtgaaca
     7981 atgaggtggg aagcatccaa ccactgcacg aaattggcga aatgctaaaa ttgcttgaac
     8041 atactttctt tcatgtagat ttcgttcaag gtatcggaaa aataccactt gcacttaatg
     8101 agaatgctat tgatttgctc actttttcag ggcataaatt tcatgctcta cgtggaaccg
     8161 gaatactttt taaacgaaaa aatgtgcatt tgcattcaga aattcttggt ggtgggcagg
     8221 aaatgggcta ccgcagtgga acagaaaatt tagctgggaa tgttgcgctg gcaaaagcat
     8281 tacgactaac gctcgaaaat gagccacgaa aagaagcatt aatcgagatt cgcgattatt
     8341 tactaacgga aattgcgcaa atgtctgata tgacagttca tacgaaacaa agtgtcgcgg
     8401 ctccgcatat cgtttgtttt tcggcaaaag ggcatcgtgg ggaaatttta gtacatgctt
     8461 tagaaaaaga agatatttac atttccacca ctagtgcgtg ttcttctaag cagaagctag
     8521 caagcagcac gttaaaagcg atgggtgtga cggacgaaga agcaacagga gcagtacgtg
     8581 ttagcttatc gtatgaaaat cgtttatctg aagcgaaaat ttttattcaa aaactgcaag
     8641 aaatcattga aaatctaaat aaagtggtga aataaattgg aatttgatcg tatgttaatt
     8701 agatacggag agttatctac aaaaggaaaa aacagaaaac aatttgtgac aaagttggcg
     8761 caaaacgtca aacgtgcaat gacagatttg ccggaagttc gtattcacgg agaacgtgac
     8821 cgaatgtata ttattttaaa tggggcagat tatcagctcg cagaagaacg tttaaaaccg
     8881 attttcggaa tccaatcctt tagtccagct gtacgcgtca atttagatgt agaggaagta
     8941 aaagccgctg cacttgcctt agtacaagat gcgcatgagg agaacggaac atttaaagtc
     9001 gcagcaagac gtagccaccg cgagtttccg cttgattcta atgaaatcaa ccaagaaatc
     9061 ggtgcttatg tattacaaaa tatggaagat ttaacggtca atgttaaaaa tcctgatgta
     9121 aaactaacca ttgatgtgcg taaagaaggc gtatttttat catgccggac aattcttggt
     9181 gcagctggtc tgccagtagg ttcatcgggt cgtgcaatgt taatgctttc gggaggtatt
     9241 gatagtccgg ttgcaggcta tttagcccaa aaacgtggcg tagaaattga agcagttcat
     9301 tttcatagcc caccgtatac aagtgaacaa gcgaaacaaa aggcggttga tttagctgca
     9361 aaattggcta aatacagcgg acaggtacaa atgcacatcg ttccatttac agagattcag
     9421 gaagtgatca aacaacaaat tcctgaaagt gtgattatga ccgtaactcg tcgaatgatg
     9481 cttcgaatta cggatgaact tcgtcgcagg agaaacggtt tagcgattgt taatggcgaa
     9541 agtttagggc aagttgccag ccaaacattg gaaagtatgc tagcaattaa cgccgtaaca
     9601 gcgacaccaa tcattcgtcc agtcgtatcc atggataaaa atgaaatcat tcaaatcgcg
     9661 caaaagattg atacgtataa tttatcagtg caaccatttg aagattgctg taccattttc
     9721 acgccaccat ctccaaaaac aaaaccaaaa ctagataaaa tcgagcatta cgaaagtttc
     9781 acagattttg aagcgttaat tgcgaaagca ttagacaaca ttgaaaccat ttctgtgaat
     9841 gtagcggaaa ctgcacaagt caaagatgag tttgctgatt tattttaaga ttaaccgttt
     9901 atccttttct ggataaacgg tttttgtata ttatatacat aataaataac taaaaatgca
     9961 taaaatagtt ttaaatatta ataaaaaacc atttgacatt ataaatatac atcattataa
    10021 tgaaaagtat catttaataa ttaacgggag gggttaggat gaaagtttcc attattggtg
    10081 caacaggata cggagggctt gagctaattc gcttgcttca tcaacatgct tcggtagaca
    10141 tagcgacgtt acatagtttt tccgctcaat cagaaacact tgcaaccttt tatcctcatt
    10201 taaaagattt agaagctagc cccttagaga aaataaattc agcagaaatc atcgaaaaaa
    10261 gtgataccgt ttttattgcc acgccttctg gaatcgcgaa agatattgct ctcccatatg
    10321 tagatgcagg tttgaatgtc attgatctat ccggggactt tcgattaaaa gacaggcagc
    10381 tttacgaaaa atggtatgga aaaagcgcgg ctccaatcga gtatatcgct aaggcggaat
    10441 atggtttagc agaattccgt gataagaaag aagctagatt cattgctaat cctggatgtt
    10501 atgcaactgc aacattgtta ggtatagcac ctctagtgat aagccagttg attgatccaa
    10561 catcgattat cgtagacgct aaatcaggta tttccggcgc aggaaaagtg ccctctgcaa
    10621 gtactcattt tacagaaacc aatgaaaaca tgacacttta taaaatgaat tctcatcaac
    10681 atattccaga aattatgcaa caattaacta aatgggatga gactatccca gcaattcaat
    10741 tttctacttc gttaattccc atcacaagag gcatcttcac aaccatctac gttaaaccca
    10801 aaaatcctat cacccaaaaa gagttacata cgctttacaa atccacctac gagaatgctc
    10861 catttgtccg aatccaacca gaaaatgtat atccgactgt caaacaagtg acagcatcga
    10921 attactgtga tataggtctt gcttataatg aaaaaacgaa tgtgattact atcgtttctg
    10981 tgattgataa tttagttaaa ggggcggctg gtcaggccat tcaaaattta aacataatgg
    11041 cgaattttgc tgaaagtgac ggattaaggt ttattccggt gtatccgtga aaggggaaaa
    11101 ataaaatgga acttgtcaaa ggaaatatcg cttcaccaaa aggattttat gctgacggaa
    11161 aacatgcagg gcttaaaaga aaacgaaatg atattggttg gatttattca gaagttccag
    11221 caaatgcagc cgctgtttat acgatgaatc aaatgcaagc cgcaccaatt tttgtaacga
    11281 aagattcttt tcaaagtaat gcgaagttac aagcaattat tgtgaatagt gggaatgcca
    11341 atgcatgtac agggaatcaa ggtatgttag atgcacttgc gatgcgggct caaacggcag
    11401 aaaagttaga tattccactt gattacgtag ccgttgcttc cacgggaatt attggcgata
    11461 tgctaccgat ggacaaaatc aacgcgggaa tagaaatgct agaaaagcaa actggaaatg
    11521 cggccgattt tgaagaagcg attttaacaa cagatacgtt tcaaaaacaa atcagttttc
    11581 aaacagaaat tggtggtaga aaggtaacga tgtcaggtgt agcgaaggga tcaggaatga
    11641 ttcatccaaa tatggcgaca atgcttgctt ttattacaac agatgccgca atcccggctg
    11701 aattattgca aaaattacta aaaataaaag tagacaaaac tttcaatcaa ataacggtag
    11761 atggcgatac ttctaccaac gatatggtgg tagtcatggc gaatggctgt gcagaaaact
    11821 cgatgcttca ggaagggaca gcggattttg cgaaatttgc ggatatgttt caagcggtaa
    11881 cggagcacct tgctaaaagc atcgcgcgag acggcgaggg agcgacaaaa ctaatcgagg
    11941 tacaagttaa tggcgctaca aaaacagaag atgcaagaat gattgctaaa aaaattgttt
    12001 cctctagtct cgtgaagacg gcagcttttg gtggagatgg gaactgggga cgtattattt
    12061 gcgcgattgg ctattcaggt ggccggtttg cgccagataa tattacgatt aaaattggcg
    12121 ggattgaaat tctgaatcat agcagccaaa ccatttttaa tcaacaggcg ttagatgcct
    12181 atttagaaga agagcatatc attatcgacg ttgatcttca tatcggactt gagtcaggaa
    12241 cagcatgggg ttgcgacttg agttatgaat acgtcaaaat taacgcatgc taccggacgt
    12301 aaggaggaat caggatggag aatacgatag tcgtaaaact aggcggtgtc gcaagtgaca
    12361 atttaacaga agattttttc caacaaataa tacaatggca agctgccaat aaaaaaattg
    12421 tacttgttca tggcggcggg cattatatta caaaaatgat gaaatctctt gctattcctg
    12481 tcgaaacaaa aaatggtcta cgtgtcacta ataaagcgac tcttgaagtg acaaaaatgg
    12541 ttttaattgg ccaagtccaa ccagctatta ccactgcttt tcaaaaacgt aatatttcgg
    12601 ttatcggttt aaatgcgggt gatacagggt tactagaagc agattttttg aacgacgcga
    12661 atttgggatt tgtcggaaaa ataacgaaag taaagacaga tttaatcgaa caattactta
    12721 gcgaaaatat tatcactgtg attgcgccgc ttggtataaa cagtgaatac gattggctaa
    12781 atgtcaatgc agatacagcc gcctgtgaag tagcaagcgc acttcaagca gaagcactct
    12841 atttactaac agatgtacct ggtgtgaaaa aaggttcaga aattattggc gaaatagcca
    12901 cagatgaaat agaaaagctg caaaatgccg gcgtaataaa aggtggaatg attcctaaat
    12961 tagctagcgc tgcctttgct gccgaaaacg gtgtcggaaa agttattatt acagattccc
    13021 ttaacactag cggaacaaaa ataaaaaaca aggtggcgat tggatgaaac atgtttttcc
    13081 aacatacaaa aggtttccta ttgatttagt taacggtacg ggcacggttg taacagataa
    13141 aaatggtaaa acatatctcg atttcactag cggtatcgca gtttgtaacc ttggtcattg
    13201 tccagcaaat gttgcagaag cagtacaaca acaactaacg aatatttggc acacatcgaa
    13261 tttatatgaa tgtgctttgc aagatagtgt cgcagaatta attgcagatg gtaaagacag
    13321 attagttttc ttttgtaata gcggaacaga ggcaaatgaa gcagcgctca aattagctag
    13381 aaaatatacc gggaaagaaa aaataattac ctttgaaaaa tctttccacg gacgtacttt
    13441 tggttcgatg tcagctacag cccaagctaa aattcatcaa gggttcgggg gacttgttcc
    13501 tggcttcact tacgtccctt ataatgacat cgaggctttc cgagcagaaa tcgatgaaca
    13561 tacagcagca gtcatgttag aagtaattca aggggaaggt ggcgtcatcc cagcaaatgc
    13621 agcctttctt ttagaggttc aattgctttg caaaaaaatg ggggtattat taattattga
    13681 tgaagtgcag actgggcttg ggcgaacggg gacgctttat ggatttgagc agattggttt
    13741 agaaccagat attttcactt tagcaaaagg gcttggaaat ggcttgccga ttggagcgat
    13801 ggtcggaaaa gcgaatctaa gtagtgcttt tgggccagga agtcatggct ctacttttgg
    13861 aggaaataaa ttggcccttg cggcggctaa agagatatta cgaacaatga aacaagcggg
    13921 atttttagaa gaggtaaatg ccaaagcaga ctattttaga tatttgttag aagtgcattt
    13981 agaggcgttg gataatgttt ctgtcattcg tggtggagga tttctgatag gtatagaact
    14041 tgaaaatacc gcagaaccag ttgtaacgga acttagagat aaaggattgc taatactaac
    14101 tgcgggggct aatgtgctac gaatcttacc acctttaacc gtcagttatg cagaaatcga
    14161 tcaagccata tatttattga aaagtgtttt ggaaaaccaa ttgattggga gtgaagaggg
    14221 atgacaatgt atgcgaaaaa taatacagct gggaaagata tgctcagttt gcttgaatgg
    14281 aataaagaag aattgacaga tatcattaaa ttagctgttg caatgaaaac gaatccagct
    14341 cattatagtc atattttaag cgggaaaatt ttaggaatga tctttgacaa gccttctact
    14401 agaacacggg tttcttttga agccgggatt ctgcaattag gtggacaagc gatagtgatg
    14461 agttcaaagg aattgcaaat cgggcgtggt gaaccgatta aagatacggc gcatgtgatg
    14521 tcagaatata ttgatgcaat tatgattcgg acatttagtc atgaaaaagt agaagaattg
    14581 gcgtatcatg cagaaattcc aattattaat ggcttaaccg acctgcatca tccatgtcag
    14641 gcgttagcgg atttaatgac tatttatgaa tggaaagatc agttggaagg tgtcaaacta
    14701 gcttatattg gtgatggtaa caatgtatgt cattcattgc ttttagccgg cgctatggtc
    14761 gggatagata ttcgccttgc gatgccaaaa gggtatgagg tcgacgaaac aattcttgca
    14821 aaggcagaaa atctggcgaa gcaaagtggt ggcaagattt tcgttacaga agatccaaaa
    14881 cttgcagtga ctgatgcgga ctttatttat acggatgttt ggacaagtat ggggcaagaa
    14941 gatgaaaatg cgaaacgttt ggcggatttt ggcgaaaaat atcaagtaaa tgcagaatta
    15001 gttagtggtg ccaagcctga ttaccacttc ttacattgct taccagcaca tcgggaagaa
    15061 gaagtgacag ctgaaatcat tgatggcaat cactcggtca tttatcaaca agcgggaaat
    15121 cggcttcatg cacaaaaagc attactagca gccatcttgg aagcaaaata aaaaagtctg
    15181 gcgtaagtgc cagacttttt tattataaga aattacgttt cactttatcc cagaaagaat
    15241 ttttaggcag tttgataata ttgataaaac gatcgcctac ttctaaatta acttcatgca
    15301 cgtgttggat actaagtgct tcgctatcca ttccaatcat cgggaattcg ttatttcctt
    15361 cttcagacgc aatttcaata cgtagtttgc gttttggact aagaatgaac gaagaaccaa
    15421 gtgtgcggaa tttgttattg ttaatagaag ccagttcact tacttgcata gatggaagaa
    15481 gtgggtccac gatagaaccg ttcactgatt tattataagc ggtacttcct gttggtgtgg
    15541 aaataaccat gccatctccg cggaaagttt cgaagtgaga atcattaata taaagatcca
    15601 tcgtaagcgt tctaatgata gaagaacgaa tgttaaactc atttagtaca taaaatgctt
    15661 tggtattatt cactgttcca taaatagttg ggtaacgacg tactaaccaa cgatcttcaa
    15721 tggctgcttt gatgatttca tccaattgat taatatggaa gtcacagtat tgacctaatt
    15781 gctctgttag cgcaatccct gcatataaac aatcttgacg gaagccagtt tctcttacag
    15841 atttaagaaa agcaccatca ccaccaatgc tgataataac gtttgctttt tgatagtcat
    15901 ccgttaattc atatccataa tccgtcgtaa ttttcttcaa ttcttttgct tttgcatgta
    15961 gttcttctgt ttttcgatag gaaaaataaa aaatagtttt tgccatgtta gttgtccctc
    16021 cagaatccaa ttttaatcaa caaacttatt ataacatgac ttcagagcaa tttctttcat
    16081 cataagtaaa aaagtgaaat gggacacaat ttaagagaaa gattgtacaa aataaaagag
    16141 gctgttatta ttacattatc taatcagaaa aaggggagaa ataaatgaac gctaaaagat
    16201 ggattgcact agggattgtt tttgcacttt tgttagttag tgcgttagca aagtttacat
    16261 caagtcaaat cgcttcaaag gaagatagta gtccgacatt tgtcgaaagc ctattcgcag
    16321 ataccggcga actaaccgaa acagtaattg aagaaggcgg gaatgataca attgctgtat
    16381 tatctgtaga tggcactatt caagatacgg gagattcagg ttccttattt agtgaggctg
    16441 gctacaatca ttcttttttt atgcaacaat tagagcaagt tagaaatgat gacaatattc
    16501 aaggtgtact tttgtatgtt aattcaccag gtggcggtgt catggaatcc gcgcaaattc
    16561 gtgataaaat tttacaaatt caaaaagaac gcaatattcc attctatgtt tccatgggga
    16621 gtatggcagc atcaggtgga tattatattt ccgcgccagc cgacaaaatt tttgcaagta
    16681 aagaaacatt gaccggctcg cttggcgtca ttatgcaagg gtatgactat agtgaactca
    16741 tgaaaaaatt aggtgtttca gataatacca ttaaaagtgg cgaatataaa gacattatga
    16801 gcgggacaag accaatgacg gaagacgaga agaagattat gcagtcaatg attgatgatt
    16861 cttataatga gttcgttaaa gtagttgcac agggccgtgg aatgactgta gaacaagtgc
    16921 gtaaaattgc agatggtcgc atatacgacg gccgccaagc aaaagagaac ggattgattg
    16981 atgaatttgg ttatcaagaa gatgccctag aagctttgaa aaaagaacaa ggcttagctg
    17041 gtgcaacagt tatccaatat gatgcaccgg gagattttag ctcactattc tctgtagctg
    17101 cacaaaaaat ttccggtcaa aatgcggata tttctcaact aattaaatta actggtacac
    17161 ttaaagcgcc aagaatgatg tatttatatg gagaataatg tgagaggaga ggcgcaaatg
    17221 gctaatgaaa atgttgcttt tgaaagtaaa cgccaagtct atcattatga accaccaatt
    17281 cagaaagaag aagccattcc taaacagtac tttgctggct tttggatccg gtttttagct
    17341 tatttagtcg atttagttgt catcgcagcc ttgaagggaa tcattattaa tccgattttc
    17401 cgcgtttctg gaatggggat ggatgacagt ttcttcacat tttattgggg aatgacaacg
    17461 attatctttt tagcttactt tattctgctt actaagtttt tcggacaaac gcttggaaaa
    17521 atgttatttg gtcttcgcgt agtgaaactt gatggcgaaa aattaacttg gttaaccgtt
    17581 ttatttcgag aaggtgcgat gcgttttgtc ttaaaaacaa tttggccgtt atatgtggtt
    17641 tgtgccttta caccaaacaa acaaggcatt gcggactttt ttgaatccac atctgtcgtc
    17701 cacacgggct acttagaact agatgaaaaa tgggtaaatg gagcaaaaaa atagcttata
    17761 gcaaacttct tctttaaaat ggaatagaag cgtccattaa aggaggaaga aaaaatgact
    17821 caagtaacat ttaaacataa tccagttaca ctcgtaggta ccgaaagaaa agttggcgac
    17881 aaagcgccga acttcacagt ggtgaataga gatttagaag aagtaacatt gcacgattat
    17941 gacgggaaag tgagacttat cagcgttgtt ccttccattg atacaagtgt ttgttccaca
    18001 caaacgcgta aatttaatga agaagcaagc aatttagata atacagttgt cttaactatc
    18061 tccgttgatt taccatttgc tcaaaagaaa tggtgtgccg cagaaggttt accaaatgcg
    18121 attacattat ctgatcaccg cgatctttct tttggtgaag catacggtgt aatcatgaaa
    18181 gaacttcgct tactagctcg ttctgttttt gtggtaaatg cagcagggga aatcgtctac
    18241 acggaagtag ttccagaagg tagcgatcat ccgaattatg aagcagcgat agaagcagcc
    18301 aaaaaagctt aaatcgtaaa agccttcctt tagttaggag ggcttttttc tgtattacta
    18361 ctaaaaataa actgtactaa tgataatgaa ctatttccaa tgagaatttc atcttttact
    18421 acataaaatc ctttcacatt ctttagaaat actgtataat gtttggtggt gttagtaatg
    18481 atgaaaattc gaggtgttac ttttggcaaa tgaagcaacg caagaattat ttcaagtgct
    18541 tgataataca gctattatct tgcaaaatga acttgaaata agctatttgg aagcggttta
    18601 tgaaacagga gaaaatctgt ttcaaaaaga agttttacaa aaagaagagt tgtcttctga
    18661 aaaacaattg aaattacaag cgtcttacga aagtatcgaa cttgagaatt tctcgaatga
    18721 agaaatccgc aaaggtcttc aattagcact actaaaaggc atgaaacacg gtattcaagt
    18781 gaaccaccaa atgacgccag attccattgg tttcattgtg gcatatttgc ttgaaaaagt
    18841 gattcaaaag aagaaaaatg tttctatctt ggatccagcc tgtggcactg caaacctttt
    18901 aacaacagtg attaatcagc tagaattaaa aggtgatgta gacgttcatg caagtggtgt
    18961 agatgtagat gatttgctta tttcgcttgc actagtagga gcggatttac agcgacaaaa
    19021 aatgacattg ctgcatcaag atgggctggc taatttatta gttgatcccg tagatgtcgt
    19081 aattagtgat ttacctgttg ggtattatcc ggatgacgaa aatgcaaaaa catttgaact
    19141 ttgccgtgaa gaagggcatt catttgcaca tttcttgttt atagaacaag gaatgcgcta
    19201 cacaaagcca ggaggatatt tattcttctt ggtacctgac gcaatgtttg ggactagtga
    19261 ctttgctaag gtggacaagt ttatcaagaa aaacggtcat attgagggaa ttattaaatt
    19321 gcctgaaaca ctgtttaagt ctgaacaagc acgaaaaagc atcttgattt tacaaaaagc
    19381 ggacgtagat gtaaagccgc caaaagaagt tttattggcc aatctctctt cgctaacaga
    19441 tccgagcgta actgcaccga ttttagctga aatagagaac tggttcaaaa ggaaacgata
    19501 atggaaggaa ttgacaaaaa caaaatggaa aaaacgattg caattaacgc cggaagttct
    19561 tcactgaaat tccaattata tgatatgcca tctgaacgtg ttatcacagc agggattgta
    19621 gaaagaattg gtttgaaaga ttctattttt acaattactg tagacggaga aaaaatcaaa
    19681 gaaattattg atattcctga ccatgaaatt gctgttcaaa tgctacttga aaaattaatt
    19741 aaccacaaag ttatcggttc ttacgatgaa atcactggaa ttggtcaccg cgttgttcac
    19801 ggtggagaaa gattccctga atccgtttat attgatgacc aagtaattaa agatattgaa
    19861 gctctatctg aacttgcgcc gcttcataac ccagcgaacg ttactggtat taaagcattc
    19921 cgcaagattt taccagatgt tgtttcagtg gctgttttcg atacagcttt ccatcaaaca
    19981 atgcctccag caagttatct atacagtctg ccatacagct actatgaaga ctatggtatc
    20041 cgtaaatacg gtttccacgg tacaagtcac aaatatgtat ccgaacgcgc tgcagaactt
    20101 ttaggacgtc ctgtagaaga attacgttta ctaacttgtc accttggtaa tggtgctagt
    20161 atcgctgcaa tcgaaggcgg aaaatcaatg gatacttcca tgggattcac accactagct
    20221 ggtgtttcta tgggaactcg ttctggtaac attgaccctg cgcttattcc tttcatcatg
    20281 gaaaaaactg gcaaaactgc agaacaagta cttgatgtgt taaacaaaga atctggtatg
    20341 cttggcgtat ctggtatttc aagcgatctt cgtgatttag aagatgaagc agcaaaagga
    20401 aacgaccgcg cagaacttgc acttcaagtt ttcgttgacc gtatccataa atacattggt
    20461 tcttatgcag ctcgcatgaa cggtgtagat gccattatct tcacagctgg tatcggtgaa
    20521 aatagttcat acatccgtga aaaagtactt cgtggacttg aattcatggg cgtatactgg
    20581 gatccagcac ttaaccaagt gcgcggagaa gaaagattcc ttaactatcc gcactcccca
    20641 gtaaaagtta tcatcattcc tacaaacgaa gaattaatga ttgctcgtga tgtagaaaca
    20701 attaaaaaca atcactaaaa aagtaaaaaa ggctagctct taattaagag ctagcctttt
    20761 tttctatcct tatttttctt ctttataatc aggaacatca ttacgtacta caagaacatc
    20821 acaaggggag tggcgaataa tatactcaga tacactacca attaacaaac gttctacagc
    20881 gttaagtcca gttgcaccac acatgattaa atctgcttgg aatgcttttg ctgcttcttt
    20941 tgtaatagct gtttttggag aaccatactc aatgtagctt tctacttttg ttacaccggc
    21001 ttttaaagca tcttctttat agccactaag taattcatct gcatattcgg tagctttgtc
    21061 tgccatgctt gtatcgtaat tggctacaga tgaaaacgcg cgtgtatcga taacatgtac
    21121 cagaccaagc gccgcgtcat tacggttagc cacttgaatt gctttttgga atgctctttc
    21181 tgcttctttg gatccatcaa ctgctactaa aactctttcg tattgttgta acataataat
    21241 tcctccaatc aaaatatgta ttttctatac ttatatttta ccctcttttt cctaaaagaa
    21301 ccataaaatg aaaaataaat tatagtgaaa caaatatttc gtctaatttt actaaaactt
    21361 ttgtttgaat ttcagttagt taatttttta caacttaggt atattgtgtt agcatggggg
    21421 tgtagaaaat cttttatagt ctattatacc tatatcaagg agagtgattt agatgttagt
    21481 cggcgtacca aaagaaatta aaaataacga gaatagggtg gcaatgactc cggcaagtgt
    21541 tttttcatac gtaaatgcag gtcatactgt atacgtggaa aaagatgcgg gcattggctc
    21601 taattatcaa gacgctgatt ttgtgcaagc gggggcaaaa attgttgaaa cagctaaaga
    21661 agcttgggat gtagatatgg ttgtaaaagt aaaagaaccg attgcatcag agtatacata
    21721 ctttaaagaa ggactattac ttttcacata tttacatttg gcaaatgaac caacgcttgc
    21781 gaaagctttg atggagagta aagtaaatag tgtagcgtat gaaacagtag aacttgcaga
    21841 ccacacgttg ccactacttt cgccaatgag tgaagttgct gggcgaatgg cagctcagat
    21901 tggcgcacaa tttttacaaa gaacgaatgg tggtatgggt gtcttgcttg gtggggtgcc
    21961 gggtgtagag aaaagtgaag tggttattat tggtggcgga atcgctggaa caaatgcagc
    22021 gaaaattgca gctggtttag gtgccaacgt gaccattctt gatatgaatt tgaaacgatt
    22081 gcgcgaactg gacgatattt ttggcaatca agtccaaacg ttaatgtcga atgattttaa
    22141 tattgaaaca gctgtgaaaa aagctgattt ggttattgga gcagtattaa ttccaggagc
    22201 aaaagcgccc aaactcgtca aagagcatgt aattaaacaa atgattccgg gatctgtcct
    22261 tgtagatatc gcgattgacc aaggagggat ttttgaaaca acagatcacg tttccacaca
    22321 cgataatcca acctacgaaa aatatggtgt acttcattat gctgttgcaa atatgccagg
    22381 tgcagtaccg cggacgtcca ctttggcgct tactaatgcc actttaccat ttggattgaa
    22441 acttgctaat caaggcttaa aagcagccgt gcaaaatgac ccattcttac ttcgtggatt
    22501 aaacacatac caaggtcaca ttacgtacaa ggctgttgca gattcacttg atttacccta
    22561 tacggatagc aaagaattaa tttaataaaa aaagcgaact ttctcaaagg aaagttcgct
    22621 tttcttgtta gtcgattact tgtaaagttt ttgggaattc cgttaatact tgcacgccgt
    22681 cttttgtgac aacgaggtca tcttctatac gaacgccggc aacaccggga acataaatac
    22741 ctggttcaat cgtaaatacc atattttctt gcagttccat attgttcgtt tctgtaatcg
    22801 aagggaattc atggacactc gcgccaagac cgtgaccaag acgatgtggg aaataatcac
    22861 cgtaacctgc ttcacgaata atatttctag cagttaaatc aatttcgctt gcttttaccc
    22921 cgtcttttac tttttcgaca gcggcaattt gcgcttctaa aacagtgtcg taaatctttt
    22981 tctgttcatc ggaaatatct ccaaaagcta ctgtgcgtgt aatatcagag caatagcctt
    23041 tatggacaac gcctaaatca aataaaacta aatcgccttt tttgattttt gtttcgcctg
    23101 gagtaccatg tggcagggca ccgtttttac cagtaaggac cattgtatcg aaagacatgg
    23161 cagttacgcc ttttttcttc atttcgtatt cgattttcgc cacgatttct gcttctgttt
    23221 taccttctgc gatttcgttt acaccaactt gtacggcgta atcggctaat aaggctgctt
    23281 cttttaatat ttttagttcg gcttcggttt taatcagacg aatttgctca attttgtgtt
    23341 caatcggaat gaaagagctg ccggagaata atccacctaa ttgttcgtag cgatctacgc
    23401 tcatatgttt tttctcaata gcaaatttgc ttggatttgc aacgcgtttt ttgatttcgt
    23461 ctgcaatgat ggtgaaagga ttctcggtat cgttatatcc gtatgcaggg tgtgtccagt
    23521 caccgccgcg cacatcttct acttcaagag cgggcgtaaa taaaaacggt tcactatctg
    23581 ggaaaactgc taagccaagc acgcgctcat gaggctcact atgataaccc gagaaataag
    23641 cgatgttctc tggatctgtt aaaaatgcca cctcagcacc ttggtctttt agccaatttt
    23701 gtaagacatc gatatttttt tccataattg taccttcttt ccaattgatt tctatttcat
    23761 gataacatgc gaa
//
LOCUS       DASEAA010000027        23619 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.027, whole genome shotgun sequence.
ACCESSION   DASEAA010000027 DASEAA010000000
VERSION     DASEAA010000027.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23619)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23619)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23619
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.027"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(80..2038)
                     /locus_tag="U0342_000897"
     CDS             complement(80..2038)
                     /locus_tag="U0342_000897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2422253.1"
                     /translation="MKLSDITSEPLIFLDKDWRTKEEVFDGLIDALHNQGVLSDKNEF
                     KKAVLEREKISETGLEKGFAIPHGKSKAVKKAAFAFARINQPINSWGSIDPTNEVKYI
                     FLLAIPENEAGSTHLELLAALSKRLLDPAFIESISTAPTVNEFITVLDSEQQEDEKVD
                     YTRKIVAITACAAGIAHTYMAAEALELAGKELGIEVIVEKQGANGIEDRITPEILKGA
                     EAVIFATDITAKDKERFAGMPFIQRRVAEPLRSGKEMIETVLSKPDGYVKADTDGSEQ
                     QFDNNKSSVFSQIYRGILTGISYMLPVIVAGGLMIGIGQLGATAFGLEKVIGNPEYAT
                     NSNQLIVIFHYLGLYGNMIMKFMYPVFGAFLAYSIADRPGLAPGFIGGAFAAGLHYTF
                     WGIDGGIPSGFFGVLILGIIAGFVAKFLNEKIKLHKNLQAMKPMFLIPGITVLVLFFV
                     NYYVVDPVFGGLNAWLQELIIQNQDASAVLLSTIIACLTAFDLGGPVNKAAGAIAIGL
                     AADGIFPLTARVLAIVIPPIGLGLATVLDKYVVKRRVFDENLRVAGTTSIFLGFIAIG
                     EGAIPFMLQNPLITIPINMIGASLGAVTAVLLGAVQWLPLPAIWGWPLVENFWAYAIG
                     LIVGIAFITFANIFVRYGLITRKENKIK"
     gene            2204..2956
                     /locus_tag="U0342_000898"
     CDS             2204..2956
                     /locus_tag="U0342_000898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2422254.1"
                     /translation="MSATSLYRLFAPQIEFLSPAEKQVFFYIDNHISTIEKMSLTSLA
                     ESTNVSTTTVIRMCHKLKLSGFSELKFLLHSDKTETKPLSKDYSSTFLEKIRLGIEQL
                     PKKEIEQVATRIAYAPKIYIACLGMTKTLGEYFSKSLVTSKKNVVFTYDSFIIDILPQ
                     IVERDDLIIIISESGGTENTLSLAEHLKYNLSNVIAIVNNPNAQISQYVETIIYASSE
                     EFDEDSFKHHHAPLLIVIDLILNIFEQQKKLI"
     gene            3039..3407
                     /locus_tag="U0342_000899"
     CDS             3039..3407
                     /locus_tag="U0342_000899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RpiR family transcriptional regulator"
                     /protein_id="HEM2422255.1"
                     /translation="MKLDGVCKINSALGMEYQFGEFYIDRDYLVFDQDFSLGMKKRQT
                     FPVAKLGHIALVREEEEIMLTFSCDNIEFEINGNSHDNLREFRDLLQNKGTNSAEIQK
                     AESKKKARYTTHHYHNFAKS"
     gene            3421..4032
                     /locus_tag="U0342_000900"
     CDS             3421..4032
                     /locus_tag="U0342_000900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2422256.1"
                     /translation="MYKAIIFDVDGTILDTERAVLHSLQAVLAEEGLSYELDELRFVL
                     GITGAAAVEQLNILDPEKVLDKWIEREATFIEEVEVFEGIHKVLHAIPESGVVTSKNA
                     LEMEKGFYPFNIQDHFQAIVCASDTENHKPHPDPLLKGLEILGREPHEVLYVGDSSYD
                     MKCAHAAGAHFGLALWGAKTTDGFEKAELVFEKPEDILAYVSK"
     gene            complement(4075..4479)
                     /locus_tag="U0342_000901"
     CDS             complement(4075..4479)
                     /locus_tag="U0342_000901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cupin domain-containing protein"
                     /protein_id="HEM2422257.1"
                     /translation="MTTLENSVIFDKGELITNDYFTGNAYLKMLVPEDTVYNCPIGNV
                     TFEPGARNNWHKHDGGQILLVTGGTGYYQEEGKPAQLLREGDVVTIPKDVKHWHGATK
                     DSWFVHLAISTNVELGGTTWLEPVSNEHYNNL"
     gene            complement(4479..4934)
                     /locus_tag="U0342_000902"
     CDS             complement(4479..4934)
                     /locus_tag="U0342_000902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003768635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2422258.1"
                     /translation="MTKNNISFYVVDASEELTMNIKEASEKSGVSADTIRYYERIGLI
                     PPIHRNESGVRKFGAEDLRWILFTRQMRRAGLSIEALIDYLALFREGEHTLEARAELL
                     KKQRIELKNRIDVMQEALDRLDFKIDNYDTHLIPAQEELKDFNVERSNS"
     gene            complement(5019..5900)
                     /locus_tag="U0342_000903"
     CDS             complement(5019..5900)
                     /locus_tag="U0342_000903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466249.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator"
                     /protein_id="HEM2422259.1"
                     /translation="MHIKILKNRYPNIVVSKNPIKSSSDTISFFEEPYYFTIPKSNLS
                     EEEAMLLHTLFPEPLPTFPKESTQFWFDLLFGNKELAMTNEKETYRITQFHIKTTTTK
                     NMLQEWQKALLSFFSPEAELIMFSTNYGVIIEKSTGSLLGEEELIAVAGTLENDFYIQ
                     STFFMGLFHPLNDRLRGLFAEERAIFNHNNREVVQTVASESLKVIALRMKESLITNEL
                     NDLFHQDDTWIPLIHTLFKNQGNISLTAKELFMHRNTIQYRLDKFYEQTNLSLRKMDG
                     LLLAYLSTLQTNNSNHE"
     gene            6070..6519
                     /locus_tag="U0342_000904"
     CDS             6070..6519
                     /locus_tag="U0342_000904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2422260.1"
                     /translation="MADRQESLAKAIAIIHRSESTFKNKKLLETGLNIGQLRYLWTLY
                     KEDGISQESMAKRFMVDKASVTRHIKRLEELGMIRREIDAKDRRIQRIFVTETGFQMR
                     DLIEEVTAEWSALLTANFSEKEKDDLMHLIGRLSDNAIIAVEGGESE"
     gene            6516..7868
                     /locus_tag="U0342_000905"
     CDS             6516..7868
                     /locus_tag="U0342_000905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466247.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2422261.1"
                     /translation="MKEQSKRLGEDSIPSLMARLSIPAFIGMFVMGMYNIVDTIFVSY
                     GVGPSGVAALSIAFPVQMILMAMAAMFGIGGASIISRSLGAGEQKQADKVFHQVIWLV
                     LISSIFIAIVTFIFLDPLITLFGAPADIHDIASDFLSLILLGAVFQTFAMAMNNIVRS
                     EGNAKTAMLTMIISAILNMILNPIFIMGFGMGVRGSALATVIAQAVGAIWLLIYFLSG
                     KSTLSLKGFSFRMDFPLIRRIMAIGFPSFIMMSAGSIVTVAVNWMLNIYGGTMAIAVY
                     GIANRIASFVIMPINGVTQGMQPIVGFNYGSRQFERVMKAVKVSMIAATVMSLIAWGL
                     VEIFPGMLVRIFSNDPELIAQGTNAVRFMLLAAPTIGFQIVCGGLYQALGRARISFII
                     SLMRQIICLVPLLLILPQFFGLDGIWYAFPLADLGAFTVCLVIMSKTWRRIFKNPEIV
                     "
     gene            7926..8369
                     /locus_tag="U0342_000906"
     CDS             7926..8369
                     /locus_tag="U0342_000906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466246.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM2422262.1"
                     /translation="MAKMYPYLAFENAKEALGYYEEVFGATNISRLPVSEEQSEMFGL
                     AKENLENTTVHGGFTVLGANLFCSDSFGKEVKPSNQISIMLDSNSEDPAAVADADAFF
                     EKVSSSERVTVTLPFEEQFWGGKMGQFVDEYGISWMIHTQPYSKL"
     gene            complement(8389..8850)
                     /locus_tag="U0342_000907"
     CDS             complement(8389..8850)
                     /locus_tag="U0342_000907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422263.1"
                     /translation="MEIKQIKAKDTQDIRHRVLRPEQPEENAIYPNDDMEGTFHLGAF
                     EKDVLLGIASFYPEKSTVIMNPAQYRIRGVATERRMRLKGLGTALLADGEAKIWKRGA
                     DIIWCNARIVAVGFYEKHGYRKVGKSFVIPGIGEHYLMKKVNPNKKVDQDN"
     gene            complement(8904..9638)
                     /locus_tag="U0342_000908"
     CDS             complement(8904..9638)
                     /locus_tag="U0342_000908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466244.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2422264.1"
                     /translation="MEPLFSIGEMAKKSQLSIQRLRYYDKIGLLVPAFTDPTSGYRYY
                     KTAQEEQLNLIQALQYMGFSLQELKQYLDKNTSESLPDLLIKYQQKLMDEEARIARKK
                     WLIDRYQGLLKRETDTTKPLTAVRLLLTEPLLTPVHADILNDPAFHQEVQKTVSRLGL
                     SKSYQQFPGYCILDGQTYLFIELDHSIGAPGERRLLSSERQAFVTPQNWETPPENENY
                     LLQETVAWINQELVRGYSYETKLTFE"
     gene            9718..10437
                     /locus_tag="U0342_000909"
     CDS             9718..10437
                     /locus_tag="U0342_000909"
                     /EC_number="3.5.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466243.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2422265.1"
                     /translation="MKIIVEKDYENMSKTTMQLLLGKMYQDKLVHLAITAGSTPKRMY
                     ELIVEEMKEKAPLTNVSYYNFDEIPIGDEKYGVTIANLKAMYFDPAGIPEEQIHMLDT
                     KNYTDHEAHLKAVGGLDAILIGIGEDGHFCGNLPGVTKFGDETRLVSVQSRPDMFDIL
                     LGEVGGDVEKVPEYYVTMGPKSVMHAKEVILFANGKKKAAIIKKALQGPVTEDIPSSI
                     FQLHPNFTVVLDEEAASELNI"
     gene            complement(10479..12056)
                     /locus_tag="U0342_000910"
     CDS             complement(10479..12056)
                     /locus_tag="U0342_000910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466242.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl--CoA ligase"
                     /protein_id="HEM2422266.1"
                     /translation="MNSENLIAPELYNITDEIAKFSSEKTALIWKNEHNETKNWSYRH
                     LLEQANKFANVVKDAGIKKGDHVIVMTPRLLETYAIYMGLWKAGAIIIPASELLKAHD
                     LEYRIHHANVKAIVSYNGMTAEFDKIESIPSVSKKIIVGEKLSGWDHYETLMEAASTE
                     FERVETSRDDACLLAFTSGTTGNPKGVVHIHGWGYAHIRIAADHWLDIHEDDIVWATA
                     GPGWQKWVWSPFLSVLGKGATGFIYNGRFIPEKQLHLLEEEKINVLCCTPTEYRLMAK
                     VNNLREHDLSSLRSAVSAGEPLNREVIQVFQDNFDIKVRDGYGQTESTLLIGTLVDTP
                     IRPGSMGKPIMPEYMAIIDAEGNPVGVGEIGDIAMRRDFPALFKEYYKEPERLQKAIR
                     GDYFVSGDRAIRDEDNYYWFQGRNDDIIISSGYTIGPFEVEDALTHHPAVKEVAVVAS
                     PDEIRGTVVKAFIVLKDGYEGTEDLVHELQTFTKEQTAPYKYPRRIEFVEALPKTDSG
                     KIRRVELRDAEFASVHG"
     gene            12251..12721
                     /locus_tag="U0342_000911"
     CDS             12251..12721
                     /locus_tag="U0342_000911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466241.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside deaminase"
                     /protein_id="HEM2422267.1"
                     /translation="MERAFFMQQALEEAEKARDIGEVPIGAVVVLDGEIIGRAHNLRE
                     TSQNAVTHAELLAIQDACKHQNSWRLSGAELYVTLEPCPMCSGAILLSRIEKVYYGAK
                     DPKAGTAGSLMNLLQDDRFNHTCEVEAGLMEKESSEMLRSFFQDLRKRNKLNRS"
     gene            13103..14509
                     /locus_tag="U0342_000912"
     CDS             13103..14509
                     /locus_tag="U0342_000912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome ubiquinol oxidase subunit I"
                     /protein_id="HEM2422268.1"
                     /translation="MDKLFLARFQFASTTIFHFLFVPLSIGLVFMVALMETLYVVKGK
                     EIYKKMSKFWGHIFLINFAVGVVTGIIQEFQFGMNWSDYSRFVGDVFGAPLAIEALLA
                     FFMESTFIGLWIFGWDKLGKKLHLACIWLVSIGTIMSSFWILAANSFMQHPVGFEFKN
                     GRAEMNDFLQLITNGQLLVEFPHVIFGAFATGAFFIAGVSAYKMLKKQDVAFFKRSFQ
                     IAMVMAVIGGFGVAFSGHSQAQYLVKTQPMKMAATEGIWEDTADPAPWTMIAKINPEE
                     KKNEWEVNVPYALSFLSYGTLTGSVEGMNTLQKQYEEKYGEGDYIPPVKTAFWSFRIM
                     VGAGMLMILFALIGIVLAWKKKLVNAKWYLRFMIPMIGFPFLANSMGWIMTEIGRQPW
                     VVFGYMKTADAVSPNVSSGQILFSIIAFSTIYTILAILLVYLFIREIKKGPDGHKPEK
                     AEISVDPFDKGDESFVTK"
     gene            14496..15509
                     /gene="cydB"
                     /locus_tag="U0342_000913"
     CDS             14496..15509
                     /gene="cydB"
                     /locus_tag="U0342_000913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome d ubiquinol oxidase subunit II"
                     /protein_id="HEM2422269.1"
                     /translation="MSLNELWFLLIAILFIGFFFLEGFDFGVGMSTRFMARNALERRV
                     LVNTIGPFWDANEVWLLTAGGAIFAAFPNWYATMFSGYYIPLVFLLLALIGRGVSFEF
                     RGQKDSPLWIKTWDWVIFFGSILPPFLFGVLFASLIQGMPINSDMDMYAGFFDYITVF
                     SVWGGVTITLMCLLHGLLFITLRTEEDIQDRARRMAKRVWFITVPALVIFVVLAYFNT
                     DMFQVRPVLVPLMIGIVVVMYVLSALFIWKDRDILAFTFGGLGIVFTIATIFVSLFPR
                     VMISSINSAFDLTIENAASGQYSLSVMTIVAVTLLPFVLGYQIWSYYVFRKRVSSKEK
                     MTY"
     gene            15509..17233
                     /gene="cydD"
                     /locus_tag="U0342_000914"
     CDS             15509..17233
                     /gene="cydD"
                     /locus_tag="U0342_000914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductant ABC exporter subunit CydD"
                     /protein_id="HEM2422270.1"
                     /translation="MGKDLRNYKGIKKIMAILAVFTLVQGAAIIVMAITLARAITDLF
                     HEHAFQSVTIQIGLFAGAYFLRHFLNVWKKQIVYRYAAKLAKTMREELLDSLFALGPR
                     FARAEGTGKVVTMVMEGVADFRNYLELFLPKMMNMAIIPAMIWVYIAFQDWTSAFILM
                     ITLPILIVFMIILGLAAKKQADSQFETYRVLSNHFVDSLKGLETLRYLGLSHDHEGKI
                     ASVSSRYRKATMKTLRVAFMSSFALDFFTMLSIALVALFLGLGLIDGNMNLPIALSVL
                     ILAPEYFLPVREVGSDYHATLDGQEAGRVIQGIIDQAKAEKPETNALPLTTFAENTEF
                     SFENITVKHDVDAADSLHEASFTVKGFEKVGIIGATGAGKSTLIDVLSGFLTPTSGGF
                     RWNGESGASLASSDWQTQVTYIPQHPYLFHDTIAGNIRFYHPNSTDEEMKKAAESAGL
                     NKLVAGLEDGYETLVGEAGRMLSGGQEQRVALARAFLTDRPIVLMDEPTAHLDIETEY
                     ELKKPMLDLFENRLVFFATHRLHWMLEMDRIIVLDHGAVVETGTHEELLSRKGFYYNL
                     VKAQLEEV"
     gene            17233..18972
                     /gene="cydC"
                     /locus_tag="U0342_000915"
     CDS             17233..18972
                     /gene="cydC"
                     /locus_tag="U0342_000915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiol reductant ABC exporter subunit CydC"
                     /protein_id="HEM2422271.1"
                     /translation="MRKSSWIIPYIKENRGLFLLVIFLGTLTFASAGALMFTSGHLIS
                     KSSLMPESIMAVYISTVGVRAFGIMRSVSRYVERLSSHSLVLRILEKMRVRLYRLLEP
                     QALLLKSRYKTGDILGLLAGDIEHLQNFYLTTMLPAIVSLVLYAGVVIALGAFSIPFA
                     ALFVLLIGLLVLVLPWVSLLYARGKNAYLKQGRNSLYQKFTDAVFGISDWKFSGREKT
                     FISNYEKDEADMLRTENKQFHFVNWRDFFSQLVVGFMVIVMVYWSTAESRDGAFSGTM
                     IAAFVLAIMALAEAFVPVSSAISDKSLYQDSLARLDKIEDPTLPTFEEETKEIERINT
                     ENVVLKAENLTFAYDEKSPEILNGFDFTLQQGEKVAIIGRSGTGKSTFLKLVQGALLP
                     TAGKVTMNGVEVENLRPQIPEITSMLNQKAHLFSTTVLNNIRLGNQDASDEEVYEAAK
                     KVQLHDFIMSMPDGYHTQMSEMGERFSGGERGRIALARILLQNTPIVILDEPTVGLDP
                     ITERDLLATIFETLADKSLIWVTHHLVGAEKMDRVLFLEEGKTLMEGPHAELMAEEPR
                     YKRLYQLDRPIEL"
     gene            19115..20062
                     /locus_tag="U0342_000916"
     CDS             19115..20062
                     /locus_tag="U0342_000916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2422272.1"
                     /translation="MKKFHGLVLTALVTCLIIPFSLAASAETNENGNNSTPTEEKTTD
                     TTENIITEEKPEPAVPTKDTTVTTSQKSKVQTTIDITDSQEVYSYEQNSKIDLKDFTA
                     TLTDYTDTKLTNYRLAANSKLSTAQTGIQEVTLLGDSEDGKTTAVKLNYLVKEKTAQL
                     TITDMNFDLETKIFTGKTKPFASVYMSSPADENFGEGTTTADKDGYFYAEWATTPKQI
                     TAYAFDESGNYSEEVTYQVPAKKQNEAVVTAPDKVKKIETKNAVKSATAKPADVAKVT
                     KDDKTDLPSTGDKGTEWIFVVAGVIVILVAVLLLRKRKK"
     gene            20105..21043
                     /locus_tag="U0342_000917"
     CDS             20105..21043
                     /locus_tag="U0342_000917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2422273.1"
                     /translation="MKKLLSGLIIVLMVSLLGHSFNAEAASYEKIIYDKAVNLKGVVN
                     QSKRNDGINSKMYKTSSSVKYLGSAKKYDKKTLIITREGKTARAKWYYCKLGNTTIGW
                     IDSRAFTNVGKPTIADTVPALWNSKKAIITTKPKNTTATTYFFQKNSAGNWYEVRHFT
                     SHIGKWGFDPKFSEKSSGTPVGVYRTGIAFGQKGNPGTKLTFRAITNRSYWISNSNDK
                     SYNTWQERNSSSSADEKMKIPQYKYGMEVKYNAKRVKGKGSAVFYHVDSPKYNYTLGC
                     VAQSEANTKEVLKFADKNTLIVLGEESRIKTFYGIN"
     gene            21156..22670
                     /locus_tag="U0342_000918"
     CDS             21156..22670
                     /locus_tag="U0342_000918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gluconokinase"
                     /protein_id="HEM2422274.1"
                     /translation="MTSKPYIMGVDIGTSSTKAVLFNQRGEVIFRQATHYELITDETG
                     KAEESPTEIFEAVLSSIQAVMKNVNKEELAGISFSSAMHSLIMVGSNGELLTECITWA
                     DGRSSETLEKVKRDNYLFQLYEATGTPIHPMSPFAKICWLKEEKPTLFKRTEKFVDIK
                     SYILYRLFGVWVMDESLASGTGLYNIMEHDWEFEAMEIVKLTPDLLPKVVPETYQLTG
                     VKKEYAELMGIPENLPFIVGGSDGALANIGIQATGQNDVTITVGTSGAVRKLTNQFQI
                     DSRGRTFCYGAGDGYFIAGGAVNNGGKVVEWGLQQFGSEAEISRRDFASFIAKIEEVP
                     PGAAGLLFQPYLLGERAPFWTNDIRGGFVGLTINHTKAHFIRAILEGVAFNLAEVYEA
                     VSAPDDIIYVTGGISAHDGWCRLLADILNREIRVPHTIEGSSLGAAIIGMRSLGILKD
                     LNLKHTLPIKAVYHPSENVLKYAELRLIFKQVTTQLMSSYSQLNSWQKKFDINS"
     gene            22946..23212
                     /gene="ffs"
                     /locus_tag="U0342_000919"
     ncRNA           22946..23212
                     /ncRNA_class="SRP_RNA"
                     /gene="ffs"
                     /locus_tag="U0342_000919"
                     /product="signal recognition particle sRNA large type"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF01854"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF01854"
     gene            23366..>23619
                     /locus_tag="U0342_000920"
     CDS             23366..>23619
                     /locus_tag="U0342_000920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422275.1"
                     /translation="MQQLKSKKKWLPALIVAVFVGIIVILAIMFGFFQRQEVFDKYEV
                     AYEIDGKLYEVFPISATDIGVDKKSKDKNLYFRVNSYYNI"
BASE COUNT         7206 a         4381 c         4968 g         7064 t
ORIGIN      
        1 caattttatt ttttttcatt ttaaaaacct ctcaaattaa gtgacaggta ctaacgagag
       61 tacctgtcag cctatttttt tatttgattt tattttcttt acgtgtgatt aggccgtagc
      121 gtacgaagat attcgcgaat gtgataaagg cgatacctac gattaaacca atcgcatagg
      181 cccagaaatt ttcaacgagc ggccaacccc aaattgctgg gagtggaagc cattgtactg
      241 caccaagtaa aacggcagta accgcaccaa gagaagcacc aatcatatta attggaatag
      301 tgataagtgg attttgtagc ataaacggta tcgcgccctc tcctatggca ataaacccta
      361 ggaaaataga ggttgtacct gcaacacgta agttttcatc aaaaacacga cgtttaacaa
      421 catatttatc taatacagtc gcaagcccaa gtccgattgg cgggataacg attgctaaaa
      481 cacgagcagt tagcgggaaa attccgtctg ctgcgagtcc gattgcgata gctccagctg
      541 ctttattgac tggtccacct aagtcaaatg cagtcaaaca agcaataatt gtcgaaagta
      601 gtacagcact tgcatcttga ttttgaataa ttagttcttg taaccatgcg tttaagcccc
      661 cgaataccgg gtcgaccaca tagtaattga cgaagaacaa gactaaaacg gtaatccctg
      721 gaatcaggaa cattggtttc atagcttgta aatttttgtg taatttaatt ttttcgttta
      781 agaatttagc aacaaatccg gcaatgatac ctaaaattag aacaccgaag aatccagatg
      841 gtataccgcc atctatgccc cagaaggtgt aatgtagccc tgctgcgaaa gcaccaccga
      901 taaacccggg agcaagtcca ggacggtcag caattgagta agcaaggaag gcaccgaaaa
      961 caggatacat gaatttcata atcatatttc cgtataaacc gagataatgg aagattacaa
     1021 taagctggtt agagtttgtt gcatactctg gattaccaat aactttttca agaccaaagg
     1081 cagttgcgcc aagttggcca ataccaatca ttaaaccacc tgcgacaata acaggtaaca
     1141 tataagaaat accagttaaa atcccacgat aaatttgcga gaaaacactg ctcttattat
     1201 tatcaaattg ttgttctgaa ccatctgtat cagctttgac atagccatct ggtttgctta
     1261 atacagtttc aatcatttct ttaccactac gaagtggctc agcgacacgt ctttggataa
     1321 agggcattcc ggcgaaacgt tctttatctt ttgcggtaat atctgtcgcg aaaatgactg
     1381 cttctgcgcc tttaaggatt tcaggagtaa tgcggtcttc aataccattc gcaccttgtt
     1441 tttcgacgat aacttcaata ccaagttctt taccagctag ttcaagggct tccgctgcca
     1501 tatacgtatg ggcgataccc gctgcacatg ctgtaatagc aacgattttt cgtgtataat
     1561 ctactttttc atcttcttgt tgttcagaat ctagcacggt tataaattcg tttactgtcg
     1621 gagcggtaga aatgctctca ataaaagcag gatcgagtaa acgcttactt aaagctgcca
     1681 aaagttctaa atgagttgat ccggcttcgt tttctggaat agctaataaa aagatatatt
     1741 ttacttcatt tgttggatca atgctgcccc aagaattaat tggttgattg atacgagcaa
     1801 atgcaaaagc agctttttta acagctttag atttaccatg tggaatagca aaacctttct
     1861 ctaaaccagt ttcagaaatc ttttcgcgtt ctaagacagc ttttttgaat tcatttttat
     1921 ctgacaaaac tccttgattg tgtaaagcat caattaatcc atcaaatact tcttctttag
     1981 tgcgccaatc tttatctaaa aagatgagtg gctccgatgt aatatcgctt aatttcaatg
     2041 ctatcagctc ctttattaac agtcttttcc ctaggttact ttagttatac catattattt
     2101 ttttgaaaaa gtacgaaaat cgtacaattg tacgcagtgt tgttcattcg cttttatttc
     2161 atgtatacta aaattaattc ggatagccat ggaggtattt attatgtcag ctacttcact
     2221 ttatcgcttg tttgcgcctc aaattgaatt tttaagtcct gctgaaaaac aagttttctt
     2281 ctatattgac aaccatattt ctaccattga aaaaatgtcc ctcacatctc tagcggagtc
     2341 aaccaatgtc agtaccacaa ccgttattag aatgtgtcat aaattaaagc tttccggttt
     2401 ttctgagctg aaatttttac ttcactcgga taaaacagaa acaaaacccc tttcaaaaga
     2461 ctattcatct acatttttag aaaaaattcg tttaggaatt gagcaacttc caaagaaaga
     2521 aattgagcaa gtcgcgacaa gaattgcgta tgcacctaaa atctatattg cttgtctagg
     2581 catgacgaaa acattaggag aatatttttc caaaagtctt gttacatcga aaaagaatgt
     2641 agttttcacc tatgattcat ttattatcga tattttgcca caaattgttg aaagagatga
     2701 tttgattatt attatttctg aaagcggtgg caccgaaaac accctttcac tcgcggaaca
     2761 tttaaaatat aatttatcga atgtcattgc gattgtgaat aatcccaatg cccagatttc
     2821 ccaatatgtg gagacgatta tttatgcttc cagtgaggag tttgatgaag attcatttaa
     2881 acatcatcac gccccactgt taattgtgat tgacttgatt ctaaatattt ttgaacagca
     2941 aaaaaaactt atttaaaata tttttatgaa attgcttgac atgaaaccca tttcatcatt
     3001 taaaactaat atataaggca atgaaggagg cgaatgatat gaaattagat ggggtatgca
     3061 agattaattc agcacttgga atggagtatc aattcggaga gttttacatc gatagagact
     3121 atcttgtttt tgaccaagat tttagtttgg gtatgaaaaa aagacaaacg tttccagttg
     3181 caaaattagg gcatattgcg ctagttcgag aagaagagga aatcatgcta acatttagct
     3241 gcgataatat tgaattcgaa ataaatggaa attcccatga taatttgcgc gaatttcgag
     3301 atttacttca aaataaaggc accaacagcg cagaaatcca aaaagcggaa agtaagaaaa
     3361 aagcaagata tacaacgcac cattatcaca acttcgctaa atcttgaagg aggaaattat
     3421 atgtataaag caataatttt tgacgtagat ggaacaattc tagacacgga gagagctgtt
     3481 ttgcattctc ttcaagcggt tttagccgaa gaaggattaa gttatgaact ggacgaatta
     3541 cgatttgtcc ttggaattac cggagcagct gcggtggaac aattaaacat tctggatcca
     3601 gagaaagtat tggataaatg gattgaacga gaagcaactt tcattgaaga agtagaggtg
     3661 ttcgaaggca ttcataaagt actgcatgcc attccagaaa gcggtgttgt cacttctaaa
     3721 aacgcgttag aaatggaaaa aggtttctat ccgtttaata ttcaggatca ttttcaagcg
     3781 attgtttgcg caagtgatac cgaaaaccat aaacctcacc cagatccact gctgaaaggg
     3841 ttagaaattc ttggaagaga gccacatgaa gtgctttatg ttggtgattc ttcgtacgat
     3901 atgaaatgtg cccatgcggc cggagctcat tttggcttag cactttgggg cgcgaagaca
     3961 acagatggct ttgaaaaagc agaacttgtc ttcgaaaaac cagaagatat tttagcttat
     4021 gtaagtaaat aagtaaaacc cgccaacctt gaatgaaggc tagcgggttt tttgttataa
     4081 attattgtaa tgctcgttgg aaacaggttc taaccaggtc gttccgccta attccacatt
     4141 tgtcgaaatg gctaagtgga caaaccagct atctttcgta gcgccgtgcc aatgtttcac
     4201 gtctttaggg attgttacca cgtcgccctc tctgagcaac tgggcaggtt ttccttcttc
     4261 ttgatagtag ccagttccgc ctgtcacaag taggatttgt ccgccatcat gtttatgcca
     4321 gttgtttcta gctcccggtt caaacgtaac gttcccaatc ggacaattgt aaacagtgtc
     4381 ttcagggaca agcattttta aataagcatt accggtaaag tagtcattag taatcagttc
     4441 acctttatca aaaataacgc tattttcaag tgtagtcatt atgaattact cctttcaaca
     4501 ttaaaatctt ttagttcttc ttgagccgga atgaggtggg tatcgtaatt gtctattttg
     4561 aagtcaagtc gatcgagcgc ttcttgcata acatcaatgc gatttttcag ctctatgcgt
     4621 tgctttttca gcaattcggc gcgagcttcc agcgtgtgtt cgccttctct gaaaagtgcc
     4681 aagtaatcaa ttaaggcttc aatagacaaa ccagctcggc gcatttggcg agtaaataaa
     4741 atccatcgta ggtcttctgc gccaaattta cgaaccccac tttcattacg gtggatgggt
     4801 ggaattaaac caatgcgttc atagtagcga attgtatcgg cagaaacgcc acttttttca
     4861 ctagcttctt tgatattcat ggttaattct tccgaagcat ctactacata aaaactaata
     4921 ttatttttgg tcatgactat tctcctttac tgattttcta taatgattgt attccttgaa
     4981 gtggacttta agtcaagcga aaaagcaacc atgatcattt attcatgatt gctattattt
     5041 gtttgaagtg tagataaata agctaagagc aacccatcca tcttgcggag cgataagttt
     5101 gtttgctcat aaaatttatc caagcgatat tgaatggtat ttcggtgcat aaaaagctct
     5161 ttagccgtga gactgatgtt tccttggttt ttaaataatg tgtgaatcag cggaatccaa
     5221 gtatcatctt gatggaaaag gtcgttgagt tcattcgtga ttaaactttc cttcattcga
     5281 agcgcgataa cttttaaact ttcggaagcc acggtctgaa ctacctcacg attattatgg
     5341 ttgaaaatgg cacgttcttc tgcaaataaa ccacgcaatc gatcatttaa cggatggaaa
     5401 agacccatga aaaatgtaga ttgtatatag aaatcatttt caagcgtacc ggcaacggcg
     5461 attagttcct cttcgccaag cagcgacccc gttgattttt caataataac gccatagtta
     5521 gtcgaaaaca taattaactc agcttctgga ctgaaaaaac tcagcaaagc cttttgccac
     5581 tcttgtaaca tgtttttagt tgtagttgtc ttaatatgaa actgcgtaat gcgatatgtt
     5641 tctttctcat ttgtcatcgc caattccttg tttccaaaca ataaatcgaa ccaaaattgg
     5701 gtggattctt taggaaatgt tggtaatggt tctggaaata gcgtatgtaa taacatcgct
     5761 tcttcttctg aaagattgct tttaggaata gtaaaataat acggttcttc gaaaaaagaa
     5821 atcgtatctg aactggattt tattggattt tttgaaacga ctatattggg atatctattt
     5881 tttaatattt taatatgcac agtggatagc accccttctc tattctttat ttttacaaaa
     5941 gaaagatagg aagtcaaatt attgcccggg aaataaaaag gttgcgcagt caactaaaat
     6001 cctgctatac tataatggtt gacgccgcaa ctaattatgt ggcggatttt tttatgagga
     6061 gtcggataaa tggcagatag acaggaaagc ttagcgaaag ccatcgcaat tattcatcgt
     6121 tcagaaagca cttttaaaaa taaaaaatta ctagaaactg gtcttaatat aggtcaatta
     6181 cgttatttat ggacgcttta taaagaagat ggtatttccc aagaatctat ggctaaaagg
     6241 tttatggttg ataaagcaag tgtgacaagg catattaagc gtttggaaga actggggatg
     6301 attcgccgcg aaattgatgc gaaagataga cgtattcagc ggatttttgt gacggaaact
     6361 ggttttcaga tgcgcgattt aattgaagaa gtgacagccg aatggtccgc acttttaaca
     6421 gcgaatttta gtgaaaagga aaaagatgac ttaatgcatt tgataggacg actttcagat
     6481 aatgcgatta tagcagtcga aggaggagaa tctgaatgaa agaacagagt aaacgattag
     6541 gtgaagatag cattccttca ctcatggcga gattgtcgat accggcattt atcggcatgt
     6601 ttgttatggg gatgtataat attgttgata cgattttcgt gtcatatggc gttgggccat
     6661 caggggttgc agcactttca attgcattcc cagttcaaat gatactaatg gcaatggcag
     6721 ctatgtttgg tattggtggc gcgtcgatta tttcccgctc gctcggtgct ggggaacaaa
     6781 aacaagcgga taaagtattc catcaagtta tttggttagt acttatttcc agcattttta
     6841 ttgcaattgt aacctttatt tttttagatc cgcttattac gcttttcgga gcaccggcag
     6901 atattcatga tattgccagt gatttcttat cgcttatttt gttaggcgca gtgttccaaa
     6961 ccttcgctat ggcgatgaat aatatcgttc gctcagaagg taatgcgaaa acagcgatgt
     7021 taaccatgat tatttccgct attttaaata tgattttaaa cccaattttc attatgggct
     7081 ttggtatggg cgttcgtggt tctgcccttg caactgttat tgcgcaggct gttggcgcga
     7141 tttggctctt gatttatttt ttatcaggaa aaagtacttt atctttaaaa gggttctcat
     7201 tccgaatgga tttcccgctg attcgccgga ttatggcaat cgggttcccg tcatttatta
     7261 tgatgtccgc aggtagtatc gtaacggttg cggtaaactg gatgcttaat atttatggtg
     7321 gaacgatggc gatcgctgta tacggaattg cgaaccggat tgcgtcgttc gtcattatgc
     7381 caatcaatgg tgttacacaa gggatgcaac caatcgtcgg cttcaactac ggttccagac
     7441 aattcgaacg cgtaatgaaa gctgttaaag tatcaatgat agctgcaact gtcatgtcac
     7501 taattgcttg gggattggta gaaattttcc caggaatgct cgtacgaatt ttctctaacg
     7561 acccagaact gattgcacaa ggaacaaacg ctgttagatt tatgctacta gctgcgccaa
     7621 caattggttt ccaaattgtc tgcggtgggc tatatcaagc acttggtcga gcaagaattt
     7681 cattcatcat ttccctaatg cgccaaatca tctgtttagt accactttta cttattttgc
     7741 cgcagttctt cggtttagat ggtatttggt acgccttccc attagcagat ttaggcgcgt
     7801 tcaccgtctg tctagtgatt atgagcaaaa catggcgccg aatttttaaa aatcccgaga
     7861 tagtttaagg taaaacgaat tgggtatttt ctaactagtg tctcaaaaat aaaggagcga
     7921 tttttatggc aaaaatgtac ccgtatttgg cttttgaaaa tgcaaaagag gctttaggat
     7981 attatgaaga agtgttcgga gcaacgaata tttcaaggct tccagtaagt gaggaacaaa
     8041 gcgaaatgtt tggcttagca aaagaaaacc tagagaacac aactgttcac ggtggcttta
     8101 ccgtccttgg cgcaaactta ttttgttcag attcatttgg caaagaagta aaaccatcca
     8161 atcaaatttc gattatgctt gattctaaca gtgaagaccc agcggcagta gccgacgccg
     8221 atgctttctt tgaaaaagtg agcagctcag aaagagtaac agtaacgtta cctttcgaag
     8281 agcaattttg gggcggaaaa atgggacaat tcgtcgatga gtacggaatt tcttggatga
     8341 ttcatacgca accttattct aaattataaa aaacaagtgg accagatatt agttatcttg
     8401 gtccactttt ttatttggat tcactttttt cattaagtaa tgttcgccga tgccaggaat
     8461 gacaaacgat ttgccgactt tgcggtagcc atgtttttca taaaaaccaa cagcgacaat
     8521 ccgcgcattg caccaaataa tatctgcgcc gcgcttccaa attttcgctt caccgtctgc
     8581 aagtaaagct gtgccgaggc ctttcaagcg catccggcgt tctgtcgcca caccgcgaat
     8641 tcggtactgg gcaggattca taataacagt cgatttttct ggataaaaac tggcaatccc
     8701 aagtaaaaca tctttttcaa aagcgcctaa atgaaaagta ccctccatat catcattagg
     8761 gtaaattgcg ttttcttcag gctgttctgg gcgaagaacc cggtgcctaa tatcttgcgt
     8821 gtcttttgct ttgatttgct tgatttccac ggcgcccacc tccacgttat ttctttctat
     8881 tataaccaat ctttctaaaa tatctattca aaagttaatt ttgtttcata ggaataacca
     8941 cgaaccagct cttgattaat ccaagccacc gtttcttgta aaaggtaatt ttcattttct
     9001 ggaggtgtct cccagttttg cggcgtgaca aaagcttgcc gctcgcttga taacaaacgc
     9061 cgttcaccag gcgcgccaat agaatgatcc aactcaatga aaagataagt ctgcccgtct
     9121 aaaatacaat aaccaggaaa ctgctgatag cttttcgaaa gaccaaggcg gctcacggtt
     9181 ttctgcactt cttgatgaaa agccgggtcg tttaaaatat ccgcatgaac aggcgttaga
     9241 agtggctctg taagcaaaag tcggaccgca gttagaggtt ttgtcgtgtc agtttcccgt
     9301 tttaacaaac cttgataacg gtcaataagc cattttttac gggcaatgcg agcttcttca
     9361 tccattaatt tttgttggta ttttataagc aaatcgggca agctttccga tgtgtttttg
     9421 tcgaggtatt gtttcagttc ttgcaaggaa aaccccatat actgcaacgc ttgaatgagg
     9481 ttgagttgtt cttcttgagc cgttttgtag tagcgatatc cagaagttgg atcggtaaaa
     9541 gccgggacca aaagcccaat tttatcataa tagcgcagtc gttggatgga gagttggctt
     9601 ttctttgcca tttccccaat ggaaaaaagc ggttccacat ttatcaccct ttcgtcttga
     9661 ctctatagtt actatacact ttatcataaa ggtaattcaa agcgagaggt gaaaaaaatg
     9721 aaaattattg tggaaaaaga ttacgaaaat atgagtaaaa caacgatgca actgctttta
     9781 gggaaaatgt atcaagacaa gttggttcat ttagccatca cagcaggctc cacaccgaag
     9841 cgaatgtacg aactgattgt agaagaaatg aaagaaaagg caccactgac aaatgtaagc
     9901 tattataatt ttgacgaaat tccaattggg gacgaaaaat acggcgtaac cattgccaat
     9961 ttaaaagcga tgtactttga tccggcggga attccagaag aacaaattca catgctagat
    10021 acgaaaaact atacagacca tgaagcgcat ttgaaagcag ttggcggttt ggacgcgatt
    10081 ttaatcggga ttggtgaaga tggtcacttc tgcgggaact tacctggcgt aaccaaattc
    10141 ggcgatgaaa cccgacttgt ttccgttcaa tcacgcccag atatgttcga tattttgctc
    10201 ggagaagttg gcggcgacgt ggaaaaagtc cccgaatact acgtaacaat gggaccaaaa
    10261 agcgtcatgc acgcaaaaga agtcatccta ttcgcaaatg gcaagaaaaa agcagcgatt
    10321 atcaaaaaag ccctacaagg cccagtgaca gaagacattc caagctcgat tttccagtta
    10381 caccctaatt ttacagtggt gctggacgag gaagcggcga gtgagttgaa tatttaaaag
    10441 aaaacccaac cttctattta ggaaggctgg gtttttgatt atccatgcac actagcaaac
    10501 tccgcatcac gcaactcaac gcggcgaatt ttaccagaat cagttttcgg taatgcctca
    10561 acaaactcaa tccggcgcgg atacttatac ggagcggttt gttctttcgt gaatgtttgt
    10621 aattcatgca caagatcttc cgtgccctcg taaccatcct ttaagacgat aaatgctttt
    10681 acgaccgtac cgcggatttc gtcaggactt gcgacaacag cgacttcttt tacggctgga
    10741 tgatgtgtga gcgcgtcctc tacttcgaac ggtccaatcg tgtaaccaga gctaataata
    10801 atatcgtcat tccggccttg gaaccagtaa taattatctt catcgcggat agcgcggtca
    10861 ccagaaacga aataatcacc gcgaatcgct ttttgcaaac gttctggttc tttatagtac
    10921 tctttgaaaa gtgctgggaa atctctacgc atcgcgatat caccaatttc accgacacca
    10981 actggatttc cttcagcgtc aataattgcc atgtattctg gcataatcgg tttacccatc
    11041 gaaccagggc gaatcggcgt atcaaccagt gtcccaatca acagtgtact ctccgtttga
    11101 ccgtagccgt cgcgaacttt aatatcaaaa ttatcttgga aaacttgaat tacttcgcgg
    11161 tttagaggtt ctcctgctga tacggcgcta cgaagggaac ttaaatcatg ttcgcgcaaa
    11221 ttatttactt tagccattaa gcgatattct gttggcgtac agcacagcac gttgattttt
    11281 tcttcttcca gtaaatgaag ttgtttttca ggaatgaaac gaccgttgta aatgaagcca
    11341 gtggcacctt ttccgagtac agaaaggaaa ggagaccaaa cccatttttg ccaaccaggt
    11401 ccggctgtag cccaaacgat atcgtcttcg tgaatatcga gccaatgatc agcagcgata
    11461 cgaatatgcg cgtaacccca gccgtgaata tgtacaacgc ctttaggatt acctgttgtt
    11521 ccactcgtga atgcaagcag acaagcatca tcgcgcgaag tttccacgcg ttcaaattcg
    11581 gttgaagcgg cttccattaa tgtttcgtag tgatcccagc cggataattt ctccccaaca
    11641 ataatttttt tcgaaacaga agggatgctt tcaattttat caaattcagc agtcattcca
    11701 ttgtaagaaa cgattgcttt tacgtttgca tggtggatgc ggtattctaa atcgtgcgct
    11761 ttaagtagct cggatgccgg gatgataatg gcaccagctt tccataagcc catgtaaatt
    11821 gcgtacgttt cgagtaatct aggtgtcatg acgataacgt ggtcaccttt ttttatgcct
    11881 gcgtctttga caacattggc aaatttattc gcttgttcaa gcaggtggcg gtaactccaa
    11941 ttttttgttt cgttatgctc atttttccaa attaaagcag ttttttcaga actgaattta
    12001 gcaatctcgt cggtaatatt ataaagttct ggagcgatta aattttctga attcataatg
    12061 actctccttt ataagtagat tgtatatttt gataattttg ttttaggacc tagtattaat
    12121 atatggtaat ataaatgttc cgcgaaagca actaaagtgt tcctgtgaaa gtttgagcag
    12181 attattccta catccaatcc aagctatgct aaaataacaa tgagtgactt tttagaaatg
    12241 aggtgcatag atggaacgag ctttctttat gcaacaagcg cttgaagaag ccgagaaagc
    12301 acgagatatt ggagaagttc caattggtgc agtcgttgtt ttagatggag aaattattgg
    12361 gcgggcgcat aatttgcgtg aaacgagcca aaatgcagtg acccatgcgg agttgcttgc
    12421 gattcaagat gcgtgtaaac atcaaaattc atggcgactt agcggtgcag aactatacgt
    12481 tacgctagaa ccatgtccga tgtgtagcgg cgccatttta ctttcgcgga ttgaaaaagt
    12541 ttattacgga gccaaagatc caaaagcggg aacagccgga tcgttaatga atttactcca
    12601 agatgaccga tttaatcata cgtgtgaagt agaagcagga ttaatggaaa aagaaagcag
    12661 cgaaatgtta agaagttttt tccaagatct acgaaaacgg aataaattga ataggtctta
    12721 atgcttattg taagaaatca tacttttaaa tctttcattg tgaaataaaa agcaataagc
    12781 cttaccaaca tttacagcca gataataatt gcgaaaaata tcacaatcta actaaaacaa
    12841 aataacatcg aaagtactaa ataaatttgt cgcaaaatag gataaaatat actccagata
    12901 gaactcatta taaagtgaaa atctttctta actagttcct aaatctgtga aaaataagga
    12961 ttacatatta ttttattatg ctttgtgaat tacagagcaa ctgaacgcgt cactttgggc
    13021 ggtttttcac atgattttta agagggaagc acaaatcagg gaacgaagca gtaattttta
    13081 gcacaaaaag gaggagaaaa gggtggataa actattttta gcccgttttc aattcgcatc
    13141 aacaacgatt ttccatttct tatttgtacc actttcaatt ggacttgtat ttatggttgc
    13201 tcttatggaa acgttgtatg tcgtgaaggg gaaagaaatt tacaaaaaaa tgtcgaagtt
    13261 ttggggacac atattcctta ttaacttcgc agtcggtgtc gtaaccggta ttattcaaga
    13321 attccagttt gggatgaact ggtcggatta ctctagattt gttggggacg tattcggagc
    13381 accacttgca atcgaagcgt tacttgcatt ctttatggaa tctacgttta tcggactttg
    13441 gatttttggt tgggacaaac ttggcaaaaa acttcattta gcatgtattt ggcttgtttc
    13501 aatcggaaca attatgtcta gtttctggat tttagcagcg aactcattta tgcaacatcc
    13561 ggttggtttt gaatttaaga acggacgcgc agaaatgaat gacttcttgc aacttattac
    13621 taatggacaa ctacttgtgg agttcccgca cgttatattc ggggcatttg ccactggggc
    13681 ctttttcatt gctggtgtca gtgcgtataa gatgctcaaa aaacaagatg tcgccttctt
    13741 taaacgatca ttccaaattg caatggtcat ggcggtaatc ggtggctttg gtgtggcttt
    13801 cagtggtcac tcacaagcac aatacttggt taaaacacaa ccaatgaaaa tggcagcaac
    13861 ggaagggata tgggaagata cagctgaccc agctccgtgg acgatgattg ccaagatcaa
    13921 cccagaagag aagaaaaacg aatgggaagt caatgtcccg tacgcgctaa gtttcttatc
    13981 ttacggaaca ttaactggta gcgtggaagg tatgaacacg ctgcaaaaac aatacgaaga
    14041 aaaatatggt gaaggtgact acatcccacc agttaaaaca gcattttgga gcttccgtat
    14101 catggttggc gctggtatgt taatgatttt attcgcatta atcggtatcg tgcttgcttg
    14161 gaagaaaaaa ctcgttaatg caaaatggta tttacgtttc atgattccaa tgattggctt
    14221 cccgttccta gcgaactcca tgggttggat tatgacagaa atagggcgac aaccatgggt
    14281 agttttcggt tacatgaaaa ccgctgatgc cgtatcgcca aacgtttcat caggacaaat
    14341 tttgttctcg ataattgcgt tctcgacaat ttatacgatt ttagccattc tattggttta
    14401 cttgtttata cgtgaaatta aaaaaggacc agacggacac aaaccagaaa aagcagagat
    14461 ttccgtagat ccgtttgata agggggatga aagctttgtc actaaatgag ttatggtttc
    14521 tattaatcgc catcttattc attggattct tcttccttga aggttttgac tttggtgttg
    14581 ggatgtctac acgatttatg gctagaaatg cactggaacg ccgcgtgctc gttaatacga
    14641 ttgggccgtt ctgggatgca aatgaagttt ggttactaac tgcagggggc gcgattttcg
    14701 ccgctttccc taactggtat gcaaccatgt ttagtggtta ttatattccg ctagtattct
    14761 tattacttgc gctaattggc cgtggtgttt cttttgaatt ccgtggtcaa aaagattcac
    14821 cgctttggat aaaaacatgg gattgggtta ttttcttcgg tagtatttta ccgccattcc
    14881 tatttggtgt attatttgct agcttgattc aaggtatgcc gattaatagt gatatggata
    14941 tgtacgctgg gttctttgat tacattaccg tattctccgt atggggtggc gtgacgatta
    15001 cgctcatgtg cctacttcac ggattactat ttattacttt acgtacagaa gaggatattc
    15061 aagaccgtgc tcgtcgtatg gcgaaacgtg tttggtttat tactgtacca gctctagtaa
    15121 ttttcgttgt acttgcttac ttcaatactg acatgttcca agttagacct gtacttgtac
    15181 cactgatgat tggaattgta gtcgttatgt acgtgctatc tgccctgttt atttggaaag
    15241 atcgtgatat tttggcattt acattcggcg gacttggaat tgtcttcacg attgcgacga
    15301 ttttcgtgtc actattccca cgtgtaatga tcagttctat caacagtgcg tttgatttaa
    15361 ctatagaaaa tgcagcttcc ggacaatatt cgcttagtgt gatgacgata gttgccgtta
    15421 cgctactgcc gtttgttctt ggttaccaaa tttggagcta ctatgttttc cgtaagcgcg
    15481 tttctagtaa ggagaaaatg acgtattaat gggaaaagat ttaaggaact acaaaggaat
    15541 taaaaaaata atggcgattc tcgcagtttt cacgctagtt caaggtgctg cgattatcgt
    15601 gatggcgata actttagctc gtgcgattac tgacttattt cacgagcacg cgtttcaatc
    15661 agtcacaata caaataggtc tcttcgcggg ggcctatttc ttgcgtcact ttttgaacgt
    15721 atggaaaaaa caaatcgttt accgttacgc tgcaaaactt gcgaaaacaa tgcgggaaga
    15781 gttgcttgat agtttgtttg cgcttggacc gcgttttgct cgagcggaag gaactgggaa
    15841 agttgtcacg atggttatgg aaggtgtagc agatttccga aattacttgg aactgttctt
    15901 acctaaaatg atgaatatgg caattattcc agcaatgatt tgggtgtata ttgcttttca
    15961 agactggacc tctgctttta ttttgatgat tactttgccg attttaattg tatttatgat
    16021 tattctagga ttagctgcaa aaaaacaagc agattctcaa tttgaaacgt atcgcgtgct
    16081 ctctaaccac tttgtagatt cgttgaaggg tttggaaacg ttgcggtatt tggggcttag
    16141 tcacgaccat gaagggaaaa ttgcttcggt tagttcgcgt tatcgtaaag ctacgatgaa
    16201 aacgttgcgt gtggcattta tgtcgtcatt cgcgctagat ttctttacga tgttatcgat
    16261 tgcgctcgtt gcgctgttcc taggtcttgg tctcattgac ggtaacatga atttgccaat
    16321 tgcgcttagt gtcctaatcc ttgcgccaga atacttttta ccagttcgtg aagttggctc
    16381 ggattatcat gctacacttg atggtcaaga ggctggtcgc gttattcaag gaattattga
    16441 ccaagccaaa gcagaaaaac cggaaacgaa tgcactacct ttaacaactt ttgctgaaaa
    16501 tacggagttt tcgtttgaaa atattactgt aaagcatgat gtagatgctg ctgattcgct
    16561 tcatgaagcc agttttacgg taaaaggatt tgaaaaagtt gggattattg gtgcgacggg
    16621 cgctgggaaa tctaccttga ttgatgtttt gagtggcttt ttgaccccga cttctggagg
    16681 ttttcgttgg aatggggaaa gtggtgcgtc gcttgcttcg agtgattggc aaacccaagt
    16741 cacttatatt ccgcaacatc catacctttt ccacgataca attgctggaa atattcgctt
    16801 ttatcatcct aactctacag atgaggaaat gaaaaaagca gcagaatctg ccggtttaaa
    16861 taagcttgta gcgggactgg aagatggtta tgaaacgctt gtcggagaag ctgggcggat
    16921 gctgagtggt gggcaagaac agcgtgtcgc actggctcgt gcattcttaa cggatcgtcc
    16981 aattgtgtta atggatgagc caacagccca cttagatatt gaaacggaat atgagttaaa
    17041 aaaaccaatg ctagacttat ttgaaaatcg acttgtcttt ttcgcgacgc atcgtttgca
    17101 ctggatgctc gaaatggacc gaattattgt tttagatcac ggggctgtcg ttgaaactgg
    17161 aacgcacgaa gaattacttt cgcgtaaagg tttctattac aatttagtca aagcccaatt
    17221 ggaggaagta tgatgcggaa aagtagctgg attatcccat atattaaaga aaaccgcggc
    17281 ttgtttttac ttgtcatctt ccttggaaca ctaacttttg cctctgctgg agcacttatg
    17341 tttacgtctg gacatttaat ttcgaaatcg tccttgatgc cggaatccat catggcggtt
    17401 tatatttcga cagttggtgt tcgtgcattt ggtattatgc gctccgtttc acgctatgtg
    17461 gaacgccttt cgagccattc gcttgtcctt cgaattctgg aaaagatgcg tgttcgcttg
    17521 tatcgtttac ttgagccgca agcgttacta ctaaaatcac gttataaaac tggcgatatt
    17581 ctgggcctcc tcgcaggtga cattgagcat ttacaaaatt tctatttaac tacaatgcta
    17641 ccggcaattg ttagcctcgt gctttacgcg ggcgtcgtta tcgcgcttgg agcattctcg
    17701 attccatttg ctgcgctctt tgtactcttg attggcctcc ttgtgctcgt tcttccatgg
    17761 gtatcacttt tatatgctcg tggaaagaat gcttatctaa aacaagggcg caatagttta
    17821 tatcaaaaat ttaccgatgc agtgtttggt attagtgatt ggaaattcag tggacgtgaa
    17881 aaaacattta tttctaacta cgaaaaagac gaggcagaca tgcttcgaac agaaaataaa
    17941 cagtttcatt ttgttaattg gcgcgatttc tttagtcagt tagttgttgg ctttatggtt
    18001 atcgtgatgg tttattggag tacagcagaa tcacgtgatg gagcattttc tggaacgatg
    18061 attgccgctt ttgttttggc aattatggcg ctagcagaag cgtttgtacc agtttcaagt
    18121 gctatcagtg acaaatcatt ataccaagac tcgcttgctc gtttagacaa aatagaagat
    18181 ccgacgctac caacttttga agaagaaacg aaagaaatag agcgaatcaa cacagaaaat
    18241 gttgttttaa aagcagaaaa tctaactttc gcgtacgatg aaaagtcacc agaaatctta
    18301 aatggttttg acttcacatt gcaacaaggt gaaaaagtgg cgattatcgg tcgaagtgga
    18361 acagggaaat caacttttct taaattagtt caaggagctt tactgccaac agctggaaaa
    18421 gtaactatga acggagttga agtggagaat ttaagaccgc aaattcctga aatcacatca
    18481 atgttaaatc agaaagcgca ccttttcagt acgaccgtct taaacaacat ccgccttgga
    18541 aatcaagatg catcggacga agaagtatac gaagcggcga aaaaagttca gttgcacgat
    18601 tttataatga gcatgccaga tggctatcat acacaaatga gtgaaatggg tgaacgtttt
    18661 tcaggtggtg agcgtggtcg tatcgctctc gctcggattc tactacaaaa cacaccaatc
    18721 gttattttag acgaaccaac agttggtctg gacccaatta cagaacgcga tttactagcg
    18781 actatctttg aaacgttagc agataagtca ctcatatggg taacgcatca tttagttggt
    18841 gccgaaaaaa tggaccgcgt cttgttttta gaagagggaa aaacgttaat ggaaggacct
    18901 catgctgaat taatggcaga agaaccacgc tataaacgac tttatcaact agatcgcccg
    18961 attgaattat aaaattaagc cttgctaagt acaatcttag caaggttttt ttgtatcgca
    19021 gttttaatat ttgtaacaat attgtaattt aaaattgact ttcatcacat ttctgcttat
    19081 tattaaacta agcaaaatga aaggggaatt tattatgaaa aaattccacg ggctagtgct
    19141 tactgcgtta gtaacttgtc taatcattcc attctcattg gcagcaagcg ctgaaacaaa
    19201 tgaaaatggt aacaattcaa cacctacaga agaaaaaaca acagatacta ctgaaaacat
    19261 aattactgaa gaaaagccag aaccagcagt accgacaaaa gacacgactg taacaacatc
    19321 gcaaaaaagc aaagttcaaa caacgataga tattaccgat tctcaagaag tttactcgta
    19381 tgaacaaaat agtaagattg atctcaaaga tttcaccgca acattaactg attacaccga
    19441 tacaaaacta accaattatc gcttagcagc caattctaaa ctaagtactg cacaaacagg
    19501 tatccaagaa gtcacgctcc ttggagatag tgaagacggc aaaacaacag cagtcaaact
    19561 caattactta gtcaaagaaa aaacggccca actgactatt acagatatga attttgattt
    19621 agaaacaaaa attttcacag gtaaaacaaa accattcgct agtgtatata tgagttctcc
    19681 ggcagatgaa aactttggag aaggaacaac aactgcggat aaagatggtt atttttatgc
    19741 agaatgggcg acaacaccaa aacaaattac ggcatatgct tttgatgaat cgggtaatta
    19801 tagtgaagaa gtaacctatc aagtcccagc gaaaaaacaa aatgaagcag tcgtaacagc
    19861 tccagataaa gtgaagaaaa tcgaaacaaa gaacgcggtc aaaagcgcaa cagcaaaacc
    19921 tgctgatgtt gcaaaagtta caaaagatga caaaacagat ttgccaagca caggtgacaa
    19981 aggtacagaa tggattttcg tggtagcggg tgttatagtt attcttgtgg cagtgttatt
    20041 acttaggaaa cgtaaaaaat aaactaattg ctatagggaa taactcaaaa ataaggagcg
    20101 aataatgaag aagttattaa gcggtttaat tattgtttta atggttagcc tacttggtca
    20161 ctcctttaat gccgaagcag catcctacga aaaaatcatt tatgacaaag cagttaatct
    20221 aaaaggggta gtaaatcagt caaaacgaaa tgatggtatt aatagcaaga tgtacaaaac
    20281 gagtagtagt gttaagtacc tcggttcagc taagaaatat gacaagaaga cgttgattat
    20341 tacgcgcgaa ggaaaaacag caagagctaa atggtattat tgtaagctag gaaatactac
    20401 aatcggatgg attgactcgc gtgcctttac gaatgtcggc aaaccaacaa ttgctgacac
    20461 cgttccagct ctttggaaca gtaaaaaggc aatcatcacc acaaaaccaa agaatactac
    20521 cgcaacaacc tactttttcc aaaaaaatag tgcaggaaat tggtatgaag ttcgtcattt
    20581 taccagtcat attggcaaat ggggatttga tccaaagttc tctgaaaaaa gttctggaac
    20641 tccagttggc gtttatcgta caggcattgc atttgggcaa aagggtaatc ctggtacgaa
    20701 gctgacattc agagcgatta ctaatagaag ttattggatt tctaactcta acgacaaatc
    20761 ctataacact tggcaagaac gcaattcctc tagttctgca gatgaaaaaa tgaagattcc
    20821 gcagtacaaa tacggaatgg aagtgaaata caacgctaaa cgtgtaaaag gtaagggatc
    20881 ggctgtgttt taccatgttg attcaccaaa atacaattac acattaggtt gcgtcgctca
    20941 aagtgaagcc aatacaaaag aagtgctaaa attcgcggat aaaaatacac ttattgtgtt
    21001 aggtgaagaa agccgaataa aaacttttta cggtataaat taagctagag aatttctcta
    21061 gcttttttgt ttggcaaaaa agctaagtag cctagcccca aattttcttc tatttgacgt
    21121 ataataaaaa gaaacgaaaa cgcggggtga attgtttgac gagtaaacca tacataatgg
    21181 gcgtagacat tggaacttca agcacaaagg cagtactttt taatcaacga ggagaagtga
    21241 ttttccggca ggcgacgcat tatgaactaa taacggatga aactgggaaa gcggaagaga
    21301 gccccacgga aattttcgaa gcagttttat catctattca agctgtgatg aaaaatgtga
    21361 ataaagaaga attagcgggg atttcgttta gttctgcgat gcatagttta attatggttg
    21421 gaagtaatgg agagcttttg actgaatgta tcacttgggc ggacggacga agcagtgaga
    21481 cgcttgaaaa agtaaaaagg gataattact tattccaact gtatgaggcc acaggaacgc
    21541 cgatacaccc tatgagcccc tttgccaaaa tttgctggtt gaaggaggaa aagcctactt
    21601 tatttaaacg cacagaaaaa tttgttgata ttaaatccta tattttatac cgattatttg
    21661 gtgtttgggt gatggatgaa tcgttagcat cggggactgg actatataac attatggagc
    21721 acgactggga atttgaagca atggaaattg tcaaattgac tcctgatctc ttgccaaaag
    21781 ttgtaccaga aacatatcaa ttaactggtg tgaaaaaaga atacgctgaa ttaatgggaa
    21841 tcccagaaaa tttaccattc attgtagggg ggagtgacgg ggcgctagct aatattggta
    21901 ttcaagcgac cggccaaaat gatgttacga ttacagtagg cacaagtggt gcagttcgca
    21961 aacttaccaa tcaattccaa atagattctc gtggtcggac gttttgttat ggagctggtg
    22021 atggatactt tatcgcaggc ggcgcagtga ataatggtgg aaaagtagtc gagtggggtt
    22081 tgcaacaatt tggctctgaa gctgaaatta gtaggcgtga tttcgcaagc tttattgcaa
    22141 aaatagagga agttcctccg ggcgctgcgg gtcttttatt ccagccatat ttgttaggcg
    22201 agcgtgcacc attttggact aatgatattc gaggaggttt tgttgggctg acgattaatc
    22261 atacaaaagc ccattttatt cgtgcgattt tggaaggtgt tgcttttaat cttgcagaag
    22321 tttatgaggc ggtttcggct ccagatgaca ttatttacgt cacaggtggg atttctgcgc
    22381 atgatggttg gtgtagactt ctagcggata ttttgaaccg tgagatacgt gttccgcata
    22441 cgatagaagg ctcgagttta ggagcagcaa ttattggtat gcgctcactc ggaattttga
    22501 aagatttgaa tctaaaacat acgctgccta ttaaagcggt atatcatcca agtgagaacg
    22561 tccttaaata cgcggaatta cgtctgattt ttaaacaagt aaccacacag ttaatgtcga
    22621 gctacagcca attaaatagt tggcaaaaga agtttgatat taacagctaa attttggatt
    22681 tcatgatata atcactaaaa gaaaagtgat aacgaggggg agaaaccatg aataaaaaaa
    22741 tagtatggat agctttaaca ttagtaggta tttgtgtagt tggtacgatt atcgcagcaa
    22801 tcatgagtgt ttacttacgt taaaaaatat ttccgtgttc ccgcttgcac tttttacacg
    22861 aaaaaggtac actagtaatt gagctctttt cagagtttgc gctaaataat ttttatttgg
    22921 catttaatta ttggtagcaa atttgtcgtg ctagacgggg aggtagcggc gccctgtaac
    22981 ccgcaatccg ctctagcggg gttgaattcc tcatttgagg catcgtaatt gtttggtctg
    23041 cccttgacaa gtggtgttga aggttgggtc ttgcgcaatg ggaacctgtg aaccatgtca
    23101 ggtccggaag gaagcagcat taagcagtgc ttctcatgtg ccgcgaggtc gcctggcccg
    23161 agctaactat cagggtaacg cagatgattg catgtcgatg tgaggtgcgc gacactaatt
    23221 ttaaatatat aaaagactat tttgcttagc gcagagtagt cttttttcta caaatcagcc
    23281 ctatcctcag aaaaataatg tataatgatt cataaactgg tacaatataa aatagtaaag
    23341 caattcatga caaaggatga aaataatgca acaactaaaa tcaaaaaaga aatggctgcc
    23401 cgctctaatc gtcgcagttt tcgtaggaat tatcgtaatc ttagcaatta tgtttggctt
    23461 ttttcagcgc caagaagtgt ttgataagta tgaagtagct tacgaaatag acggcaaatt
    23521 atatgaagtc ttcccaatta gtgcgacaga tattggcgta gataaaaaat ccaaagataa
    23581 aaatctctat ttccgcgtga atagttacta caatattga
//
LOCUS       DASEAA010000028        23451 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.028, whole genome shotgun sequence.
ACCESSION   DASEAA010000028 DASEAA010000000
VERSION     DASEAA010000028.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23451)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23451)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23451
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.028"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            153..1193
                     /gene="rsgA"
                     /locus_tag="U0342_000921"
     CDS             153..1193
                     /gene="rsgA"
                     /locus_tag="U0342_000921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome small subunit-dependent GTPase A"
                     /protein_id="HEM2422276.1"
                     /translation="MTLEQYGFTNFFKEQKIAATSSYGRVTAVFRDYYRVITENEEFL
                     ASLKRGNFYELSSTSLPAVGDFVEVSSDAQILSVLERKTVFSRMNKDSEEQLIAANFD
                     YALIVMSLNHDFNLNRLERYLTVAWDSGATPIIILTKADLVEDLTAFAQQLETVAYGV
                     PAYYVDNLSHHGFEALERDLKPNSTLVLLGSSGVGKSSFINSLAGTDLMKTAGIREDD
                     SKGKHTTTHREMHLLTNGWIVIDTPGMREFGVGFNQAGLETTFSDVEELAEGCRFHDC
                     SHTQEPGCAVKAALEDGTLTMQHYENWLKLQREMAYHARKNSPALARQERDRWKVIQK
                     SLRTHLKTRPKK"
     gene            complement(1232..3403)
                     /gene="pnp"
                     /locus_tag="U0342_000922"
     CDS             complement(1232..3403)
                     /gene="pnp"
                     /locus_tag="U0342_000922"
                     /EC_number="2.7.7.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyribonucleotide nucleotidyltransferase"
                     /protein_id="HEM2422277.1"
                     /translation="MSEKQVFSTEWAGKTLSVEVGQLAKQASGAALIRYGDTVVLTAA
                     VGSKKPRPGDFFPLTVNYEEKMYSVGKVPGGFLKREGRPSDRATLTARLIDRPIRPLF
                     AEGFRNEVQITSTVFSVDQDCSPEMAAMLGSSVALVISDIPFEGPIAGVDVGRIDGKY
                     VINPTIEQAEKSDISLTVAGTYDAINMVEAGAKEVSEEAMLEAIMFGHEEIKRLCEFQ
                     QQIIAAVGKEKREIELFVSDPELEAEVKAASEGKMKAAIKTEEKKAREAAIEDVKEEI
                     LESYKAKELENEAEILSEVAHILEMIEKDEMRRLISQDKIRPDGRKVNEIRPLSSEVG
                     MLPRVHGSGLFTRGQTQALSVCTLAPLREHQIIDGLGTEEYKRFMHHYNFPQFSVGET
                     GPRRAPGRREIGHGALGERALQYVIPSEEEFPYTIRLVSEVLESNGSSSQASICGSTL
                     AMLDAGVPIKAPVAGIAMGLVKLGDDYTILSDIQGMEDHFGDMDFKVAGTKDGITALQ
                     MDIKIDGLSRQILDEALTQAKEGRLHILEHLTSTISAPREELSAYAPKIITLNIKPEK
                     IKDVIGPGGKQINAIIDETGVKIDIEQDGTVYIASQDQAMNRKAIAIIEDIVREVEVG
                     EVYTGKVRRIEKFGAFVELFKGTDGLVHISELAHERVGKVEDILKLGDEVTVKVIEVD
                     QQGRVNLSRKALLEKKEQPEGDKKPQAEKKFYPKTKKPESK"
     gene            complement(3651..3920)
                     /gene="rpsO"
                     /locus_tag="U0342_000923"
     CDS             complement(3651..3920)
                     /gene="rpsO"
                     /locus_tag="U0342_000923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011275926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S15"
                     /protein_id="HEM2422278.1"
                     /translation="MALTQERKNEIIAEYRVHDTDTGSPEVQIAVLTAEINSLNEHVR
                     VHKKDHHSYRGLMKMVGHRRNLLTYLRKKDVQRYRELIKRLGLRR"
     gene            complement(4057..5001)
                     /locus_tag="U0342_000924"
     CDS             complement(4057..5001)
                     /locus_tag="U0342_000924"
                     /EC_number="2.7.1.26"
                     /EC_number="2.7.7.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional riboflavin kinase/FAD synthetase"
                     /protein_id="HEM2422279.1"
                     /translation="MKTIYLHHPITTDEWTDINKVMALGFFDGVHLGHQAVIKKAKQI
                     AEKKGLQTAVLTFDPHPSVVLSNIRKQVKYLTPLEDKAEKMAELGVDIMYVVRFTTQF
                     SELSPQAFVDNYLVALHVQHVVAGFDYSYGKKGEGKMTDLAKYADGRFEVTIVDKQTA
                     ASDKISSTNIRRAIIEGELEEANQLLGYPYTTKGTVIHGDKRGRTIGFPTANIRVNED
                     YLIPKLGVYAVKFRVNGETHLGMASIGYNITFKDDQALSIEVYILDFHREIYGEEAEI
                     EWYQFFRPELKFNGVEGLIAQLEKDEQDTRAFFANLED"
     gene            complement(5071..5985)
                     /gene="truB"
                     /locus_tag="U0342_000925"
     CDS             complement(5071..5985)
                     /gene="truB"
                     /locus_tag="U0342_000925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464853.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA pseudouridine(55) synthase TruB"
                     /protein_id="HEM2422280.1"
                     /translation="MNGIIPLWKERGMTSHDCVFKLRKILHTKKVGHTGTLDPEVEGV
                     LPICIGRATKLAEYVTDEGKVYVAEITLGKSTTTEDATGETVMTKELADISADELQAA
                     LTKLTGKITQIPPMFSAVKVNGKKLYEYARAGIEVERPSRQVDIYSLTRLDGEATLNE
                     ANPTFQLEISCGKGTYIRTLAVMIGELLGYPAHMSKLERTRSGFFKKEDCLTLAEIDE
                     MMQASDSSFLYPLEKGIESMAKLVIDEEIHAKVLNGGLLPKSLFIEVENEPRAALIFN
                     DKLTAIYKPHPEKNELWKPEKVIELHQA"
     gene            complement(6081..6425)
                     /gene="rbfA"
                     /locus_tag="U0342_000926"
     CDS             complement(6081..6425)
                     /gene="rbfA"
                     /locus_tag="U0342_000926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosome-binding factor RbfA"
                     /protein_id="HEM2422281.1"
                     /translation="MNVRANRVSEQMKKELGDILNRKIKDPRLGFVTVTGVDVTGDLQ
                     EAKVFISILGTDKEKENTLLALAKAHGFIRSEIGCRIRLRKVPEMSFEIDNSIAYGNR
                     IDELLRDLNNDQ"
     gene            complement(6442..6720)
                     /locus_tag="U0342_000927"
     CDS             complement(6442..6720)
                     /locus_tag="U0342_000927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF503 domain-containing protein"
                     /protein_id="HEM2422282.1"
                     /translation="MIQSVVSEFFMQEPQNLKEKRAILKRIVTRAKQKFNISIAETDY
                     QDLWQRAEISFAIVSSSHIQAEKEAREVLAFLDSFPEWERAETVMEKL"
     gene            complement(6717..9065)
                     /gene="infB"
                     /locus_tag="U0342_000928"
     CDS             complement(6717..9065)
                     /gene="infB"
                     /locus_tag="U0342_000928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-2"
                     /protein_id="HEM2422283.1"
                     /translation="MSKVRVYEYAKEHQVSSKKVIEALKDLGIEVANHMSTINENALR
                     QLDNAIDGTNKKAEAPKKETTSNENGNSKGPNKPNMTNSNEKSNKPNNPAGQANKPAT
                     ANKSQGAKPATNKPANTSKQTQSSGNQQQAGGQKRNNNNNSNRPGGGNPNRPGGNNRP
                     NRGGNFNNKGRNTKKKGKLNHSTVPPTPPKPKELPEKIVFSESLTVAELAKKLYREPS
                     ELIKKLFMLGVVATINQSLDKDAIELICDDYGVQVEEEIKVDVTDLDVYFENELNEAV
                     DESKLVERPPVVTIMGHVDHGKTTLLDSLRNTKVTLGEAGGITQHIGAYQLEIHDKKI
                     TFLDTPGHAAFTAMRARGAQITDITILVVAADDGVMPQTIEAINHAKAAGMPIIVAVN
                     KIDKPQANPDRVMQELTEYELVPEAWGGDTIFAPISAKFGEGLENLLDMILLVSEVEE
                     LKANPDRRAIGSVIEAELDKGRGPVATLLVQDGTLNIGDPIVVGNTFGRVRAMVNDLG
                     RRVKKVGPSTPVEITGLNDVPQAGDRFVVFEDEKTARNIGETRASRALVAQRSATNRV
                     SLDNLFEHMKAGEMKEVNVIIKADVQGSVEALAASLRKIDVEGVNVKIIHTAVGAINE
                     SDITLAAASNAIVIGFNVRPTAQAREAAENESVDIRLHRVIYKAIDEIEAAMKGMLDP
                     EFQEKIIGQAQVRQTINVSKVGTIAGCYVTDGKITRDSGVRIIRDGIVVFEGEIATLK
                     RFKDDAKEVAKGYECGITVQNFNDIKEDDVIEAYVMEEIERK"
     gene            complement(9088..9387)
                     /locus_tag="U0342_000929"
     CDS             complement(9088..9387)
                     /locus_tag="U0342_000929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxQ family RNA-binding protein"
                     /protein_id="HEM2422284.1"
                     /translation="MDKKALSLLGLANRARKITTGEELVLKAVRNGKAKMVLISEDIS
                     EKTEKTIRNKCEYYNVVVKKAGTREMIGGAIGKDTRAIVAILDKGFAVKLAELLG"
     gene            complement(9380..9664)
                     /locus_tag="U0342_000930"
     CDS             complement(9380..9664)
                     /locus_tag="U0342_000930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlxR family protein"
                     /protein_id="HEM2422285.1"
                     /translation="MRNKKIPLRKCIITGERLPKGELLRIAYSKDGALTIDPTGKAPG
                     RGFYIIKSVEVCEKAKKKNAIFHQLKMPEQESFYDELITYVKSLEEPTNG"
     gene            complement(9679..10797)
                     /gene="nusA"
                     /locus_tag="U0342_000931"
     CDS             complement(9679..10797)
                     /gene="nusA"
                     /locus_tag="U0342_000931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusA"
                     /protein_id="HEM2422286.1"
                     /translation="MSTELLDALHVLEHDKGISREVLVEAIEAALTSAYKRNFKDAQN
                     VRVDLNMENGSIRVLARKEAVEQVFDSRLEISMEEAHKLNPVYKPGDVVELEVTPKDF
                     GRIAAQTAKQVVTQRVREAERGIIYDEFIDREDDIMTGIVERQDSRFIYVNLGKIEAI
                     LSQNEQMPNETYHAHDRIKVYLTKVEKTTKGPQIFVSRTHPGLLKRLFEMEVPEIYDG
                     VVEIKSVAREAGDRSKISVYTANEEVDPVGACVGPKGARVQTIVNELKGEKIDIVEWS
                     EDPFTFVANALSPSKVLDVIVNEADQATTVIVPDYQLSLAIGKRGQNARLAAKLTGWK
                     IDIKSETVATELGIYPRNDVEAPEVEDAESETYTEDEE"
     gene            complement(10827..11294)
                     /gene="rimP"
                     /locus_tag="U0342_000932"
     CDS             complement(10827..11294)
                     /gene="rimP"
                     /locus_tag="U0342_000932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimP"
                     /protein_id="HEM2422287.1"
                     /translation="MSKVLEQVEAIVTPITDELQLELVDIAFEKEGPNWFLRIFIDKD
                     GGVDIDECAAVSEKVSEKMDENDPITQNYFLEVSSPGAERPLKKEQDFENAVSKYVHV
                     TSYEPIDGRKMWEGTLVSYDGTTLVITITDKTRKITCEIPKDKVAKARLAIQF"
     gene            complement(11476..15810)
                     /locus_tag="U0342_000933"
     CDS             complement(11476..15810)
                     /locus_tag="U0342_000933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM2422288.1"
                     /translation="MTAKEEEKQERFQLLMTQIGLQDVTTYEEFTKDAKIEKLVADKK
                     NKTWQFHLHVPQIFPAALFHMMDVGMKRAFSQIAETEMQIVPENQTIDETLIQDYWNL
                     IVEPIGKQSPMIGKLLMEQKPTFKEPHFIEVAVHNDMEEATIQQRFQTKIIESYGKAG
                     FPRLAMKMHLLDQSETEEYKAFALAKQEEDQKKAAEAVQVMQKRQAEGQSGGGGAAPL
                     TGPFQIGYKIKDDEEVKRLGDIYDEERRITVQGLIFATEIRELRSGRSLLQFKITDYT
                     SSMIIKMFSRDNEDAAMFQNLKKGMWVKVRGSVQNDTFVRDLIMMAQDVNEIAGVKRL
                     DTAEEKRAELHLHSPMSQMDATSSVDSLFKQAADWGHKAIAITDHSVAQSFPEAYGAG
                     QKYGLKVIFGIEANLIDDGVPIAYNDQHIALEDATYCVFDVETTGLSAVYDTIIELAG
                     VKMKNGEIIDKFEAFIDPGHPLSATTINLTGITDDMVKGSDPIDVVLKRFKEWSGDDI
                     LVAHNASFDMGFINTAYEKVGLEKAENAVVDTLELARFLYPHFKNHRLNTLTKKFNII
                     LEQHHRAVFDAEATAYLAWKLIKDAKEMHNIDFHDSLNDYMGEGDAYKRARPFHATIY
                     AQTAVGLKNLFKLITMSNINYFYRVPRIPRSQLKKLREGLIIGTACSQGELFEAMMQK
                     GMQAAEKVAEFYDFIEVQPKPVYAPLIERELVRDEKALEEILKNIVRVGEKTGKPVVA
                     TGNVHYKDPVDKIYRKILIHSQGGANPLNRAELPDVHFRTTDEMLKEFAFLGEEKAKE
                     IVVTNANLVVDWMEDLKPIKDELYTPKIDGAEDEVRNMSYAMAHQLYGEKLPEIVEAR
                     LEKELKSIIGHGFAVIYLISHKLVKKSLVDGYLVGSRGSVGSSFVATMTEITEVNPLP
                     PHYLCPNCKDSEFFDDGSVGSGFDLPDKDCPHCGTPYQKEGQDIPFETFLGFKGDKVP
                     DIDLNFSGDYQPVAHAYTKEIFGEDYVFRAGTIGTVAEKTAFGYVRNYERDMNMTIRG
                     AEIDRLVAGCTGVKRTTGQHPGGIIVIPDYMDVYDFTPVQFPADATDSEWKTTHFDFH
                     SIHDNVLKLDILGHDDPTAIRMLQDLSGIDPKTIPTDDPDVMKLFGSTESLGVKPADI
                     DSKTGTLGIPEFGTRFVRQMLEQTKPTTFSELVQISGLSHGTDVWLGNAEELIKNKTC
                     ELPDVIGCRDDIMVFLIYQGLESSLAFKIMESVRKGKGLTEEMEEAMMANKVPLWYIE
                     SCKKIKYMFPKAHAAAYVLMAVRIAYFKVHYPLYFYATYFTVRADDFDLTSMVNGKEA
                     VKATMKEVNDKGMEASTKEKNLLTVLEIANEMLARGFHFQKVDLYKSSADEFIIDGDS
                     LIPPFNAIPSLGTNVAKQIVAARENGEFLSKEDLQQRGKVSKTIIQYMDDQGCLEGLP
                     DQNQLSLF"
     gene            complement(15916..17622)
                     /locus_tag="U0342_000934"
     CDS             complement(15916..17622)
                     /locus_tag="U0342_000934"
                     /EC_number="6.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007474535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline--tRNA ligase"
                     /protein_id="HEM2422289.1"
                     /translation="MRQTMTFIPTLKEVPADAEVKSHQLLLRAGFIRQTASGIYSYLP
                     LATLMLRKIETIIREELEAIGAAELLMPALQPAELWQESGRWNDYGPELMRLKDRASR
                     DFALGPTHEEVITALLRDEVKSYKRLPLTLYQIQTKFRDEKRPRFGLLRGREFIMKDA
                     YSFHATSESLDEVYNLMHQAYSNIFTRCGLEFRSVIADSGSIGGNESKEFMALSDIGE
                     DTIAYSDASDYAANTEMAPVLYMEKKSHELEKDMEKVATPDQKSIADIVEFLEVPIEK
                     TMKSMLYQVDDEVIMVLVRGDHEVNDIKIKNALDATNVELVDPAVAVELLGANFGSLG
                     PINVPENTRVFADNAVKDIVNAVVGANEDGFHYINVNPDRDFSVTSYFDLRMIQVGDL
                     SPDGQGVIKFAEGIEVGHIFKLGTKYSEAMNATILDENGRAQPIIMGCYGIGVSRILS
                     AIAEQSNDENGFVWDKQISPFDLHLIPVNMKSEEQVAFAETLYSSLQDAGFSVLIDDR
                     AERAGVKFADADLIGLPIRITVGKKAAEGVVEVKIRKTGEMIEVRQDELLNTLPILFG
                     DK"
     gene            complement(17663..18925)
                     /gene="rseP"
                     /locus_tag="U0342_000935"
     CDS             complement(17663..18925)
                     /gene="rseP"
                     /locus_tag="U0342_000935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RIP metalloprotease RseP"
                     /protein_id="HEM2422290.1"
                     /translation="MTTIIAFIFVFGLIVFFHELGHFLFAKRAGIMVKDFSIGFGPKI
                     FAYRKKETQYTIRLLPIGGYVRMAGEDGEEIELKPGYRVGLELTPEETVSKIIVNGKD
                     QYVNAQPIEVSLCDLEKELFIEGYEDYDDTKKVRYQVERDALVIDGKIETMITPYDRS
                     FNAKSLGNRAMTIFAGPLFNFILAILIFTALAFVQGGVPSTDNTLGNVLPDGAAAEAG
                     LKKGDEVLSINGKETKSWTDIVQSVSENPGKTLDFKIERDGKTQDIDVKPATQKENGK
                     DVGKIGVETPMDSSFTAKITNGFTQTWNWIVQIFTILGNMFTGGFSLDMLNGPVGIYT
                     STQQVVQYGFMTVLNWTAVLSINLGIVNLLPLPALDGGRLMFFLYELVRGKPIDPKKE
                     GIIHFAGFALLMVLMILVTWNDIQRAFF"
     gene            complement(18939..20081)
                     /locus_tag="U0342_000936"
     CDS             complement(18939..20081)
                     /locus_tag="U0342_000936"
                     /EC_number="1.1.1.267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate reductoisomerase"
                     /protein_id="HEM2422291.1"
                     /translation="MKKIILLGATGSIGTQTLAIIRENPEKFQIVALSFGRNMERGRA
                     IIKEFKPKMVAVWHTRDRVILEAEFPNVKFFNGLEGLREVATYLDGDVLLNAVMGSVG
                     LLPTLDAIEAGKAIAIANKETLVTAGHLVMRAAKEKNISLLPVDSEHSAILQALNGEN
                     TERIEKLVLTASGGSFRDKTREQLSEVTVKEALKHPNWNMGNKLTIDSATMFNKGLEV
                     MEAHWLFGVDYDDIEVVIQRESIIHSMVQFVDGSFIAQLGTPDMRMPIQYALTYPDRL
                     YIPYEKEFRITDFSALHFEKVDYERFPALKLAYNAGKIGGTMPTVLNAANEIAVAGFL
                     NGQVAFYNIEALVENAMNRHTSISDPDLDTILQVDQETRAYVKTLL"
     gene            complement(20096..20884)
                     /locus_tag="U0342_000937"
     CDS             complement(20096..20884)
                     /locus_tag="U0342_000937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidate cytidylyltransferase"
                     /protein_id="HEM2422292.1"
                     /translation="MKTRIITAVVALIFFIPFVVYGGIPFELLSILLATIALYEVLVM
                     TKQRIFSMNGIITLLLMWLVVVPDRYLDFLDTLHITEMEVIFILMALLLANTVFSRNK
                     FHFDQVGICMVAAFYTGFGFHYLALTREAGLMYVLFALFIVWSTDTGAYFIGKAIGKH
                     KLAPNVSPNKTVEGFIGGIVCALVIAGGFYYFAELPGNIALVLALLVFLSIFGQLGDL
                     VESALKRFYGVKDSGKILPGHGGILDRFDSLLFVLPLLHILQII"
     gene            complement(20898..21656)
                     /locus_tag="U0342_000938"
     CDS             complement(20898..21656)
                     /locus_tag="U0342_000938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoprenyl transferase"
                     /protein_id="HEM2422293.1"
                     /translation="MFKKLFRQDENILNSELAEDLPIPRHVAIIMDGNGRWAKKRFLP
                     RIAGHKEGMDVVKRVTRYANAIGIDVLTLYAFSTENWKRPTDEVDFLMKLPVEFFDSF
                     VPELIEENVRVNVMGYRENLPNHTMRAVEKAIADTAHCTGLTLNFALNYGGRSEIITA
                     AKEAMKELELKGKSADDLTEEKLNDHLMSSGLGDPDLLIRTSGELRLSNFMLWQLAYS
                     EFYFTDTHWPDFSKEDFLQAIIEYQNRSRRFGGL"
     gene            complement(21887..22444)
                     /gene="frr"
                     /locus_tag="U0342_000939"
     CDS             complement(21887..22444)
                     /gene="frr"
                     /locus_tag="U0342_000939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome recycling factor"
                     /protein_id="HEM2422294.1"
                     /translation="MSKEVLSKSKEKMEKAEQALTRQLGTIRAGRANASLLDRLSVDY
                     YGAATPVNQMASISVPEARMLLITPYDKTILGEIEKAILKSDLGLTPNNDGSVLRLSI
                     PQLTEERRKELVKEVKKEAEEAKVAVRNIRREANEELKKLEKNGDITEDDLRSYGEDV
                     QKLTDESIKNIDSITKDKEAEILEV"
     gene            complement(22444..23172)
                     /locus_tag="U0342_000940"
     CDS             complement(22444..23172)
                     /locus_tag="U0342_000940"
                     /EC_number="2.7.4.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UMP kinase"
                     /protein_id="HEM2422295.1"
                     /translation="MDTPDYKRVVLKLSGEALAGNDGFGINPSVVNLISAQIKEVVEL
                     GVEVAIVVGGGNIWRGKLGSEMGMDRAAADQMGMLATIMNSLSLQDSLENIGVATRVQ
                     TSIDMRQIAEPYIRRKAIRHLEKGRVVIFAGGTGNPYFSTDTAAALRAAEIEADVILM
                     AKNNVDGVYNADPKLDENAKKYEELSYLDVIKEGLEVMDTTASSLSMDNDIPLIVFSF
                     TEQGNNIKRVILGEKIGTTVRGKK"
BASE COUNT         6577 a         4995 c         4083 g         7796 t
ORIGIN      
        1 ggaaataagt ctagagcttg tttccttttt tgtgttatta tttaagaaag aaaggatgat
       61 gaattatggc aattgtaaaa atggaaaacc tcataattaa tacgggggta ttttacctat
      121 agaatgctcc caactacaaa ggagcgaaaa cattgacatt agaacaatac ggttttacaa
      181 atttttttaa agaacaaaag atagctgcaa cctcctctta tggtagagtt acggcggtat
      241 ttagagatta ttatcgcgtt attacggaga atgaagaatt tttagcatca ttgaaacgtg
      301 gaaattttta tgaactatcc tctacttccc ttcccgctgt tggtgatttt gtagaggtca
      361 gtagcgatgc gcaaatactc tctgtactag agcgtaaaac ggtcttttct cggatgaata
      421 aagactcaga ggaacaattg attgcagcga attttgatta tgctctcatt gtgatgagtt
      481 tgaatcatga ctttaatttg aatcgattag agcgttattt gacggttgct tgggatagtg
      541 gtgcaacacc gattatcatt ttaacaaaag cagatttagt ggaggattta acagcctttg
      601 ctcagcagct cgagacagtt gcttatggcg ttccagcata ctatgtggat aatttatcac
      661 atcatggttt tgaagcttta gaacgcgatt taaagccgaa tagtacgctt gttttgcttg
      721 gctcttccgg tgtcggaaaa tcttctttta ttaattcgct tgcaggtact gatttaatga
      781 aaactgctgg tatccgcgaa gatgatagta aaggaaaaca tacgacgaca catagggaaa
      841 tgcatttgct tacgaatggg tggattgtga ttgatacacc tggaatgcgt gaattcggtg
      901 ttggttttaa ccaagctgga ttagaaacca ctttctcgga tgtagaggaa ttggctgaag
      961 gatgtcgttt tcacgattgc tctcatacac aagaaccagg ttgcgctgta aaagcagcat
     1021 tagaagatgg cactttaact atgcaacact acgaaaattg gttgaaattg cagcgagaaa
     1081 tggcttatca cgctcgaaaa aatagccctg ctctcgcaag acaagaacgt gaccgctgga
     1141 aagttattca aaaatcactt cggacacatt taaaaacacg tccaaaaaaa tagtaaaaaa
     1201 agcaagtagc tcaggctact tgctttttgt attatttaga ttctggtttt ttcgttttag
     1261 gatagaattt tttctctgct tgtggttttt tatcgccttc tggttgttct tttttctcaa
     1321 gcaaagcttt acgtgataag ttaacgcgac cttgttggtc tacttcgata actttaacag
     1381 taacttcatc acctagtttt aggatatctt ctactttacc aacacgttca tgtgctaatt
     1441 cagaaatgtg aactaagcca tctgtacctt tgaataattc aacaaatgcg ccaaattttt
     1501 cgatacgacg aacttttcca gtataaactt ctcccacttc cacttcacga acgatgtctt
     1561 cgatgatagc aattgcttta cggttcattg cttgatcttg agaagcaatg tacactgtac
     1621 catcttgttc gatatcaatt tttacgccag tttcatcaat aattgcattg atttgttttc
     1681 cgccaggtcc aataacatct ttgattttct caggtttgat gttaagtgta atgatttttg
     1741 gagcataagc agaaagttct tcacgtggtg cgctaattgt gctagtcaag tgttctagaa
     1801 tgtgtaggcg cccttctttt gcttgcgtta atgcttcgtc caaaatttgg cggcttaagc
     1861 catcaatctt gatgtccatt tgaagtgctg tgataccatc ttttgttcca gcaactttaa
     1921 agtccatatc gccaaagtga tcttccatac cttggatatc agaaagaatg gtgtaatcat
     1981 cgccaagttt gacaagaccc attgcgatac ctgcaactgg cgctttaatt ggaacaccag
     2041 catcaagcat tgcaagtgta gaaccacaaa tacttgcttg cgaactagag ccattagatt
     2101 caagaacttc agatactaaa cggattgtgt acgggaattc ctcttcggaa ggaataacat
     2161 attgtaacgc acgttcacct aatgcaccgt gaccgatttc acgacgacct ggagcacgac
     2221 gaggacctgt ttccccaaca ctaaattgcg ggaagttata atgatgcata aagcgtttgt
     2281 actcttctgt ccctaaacca tcaatgattt ggtgttcacg aagcggtgcc agtgtacata
     2341 cacttagagc ttgtgtttga ccacgagtga ataaacctga accatggaca cgaggaagca
     2401 taccaacttc agaagaaagt ggacgaattt cgtttacttt acgaccatct ggacggattt
     2461 tatcttgaga aatcaaacga cgcatttcgt ctttttcgat catttcaaga atatgagcta
     2521 cttcgctaag aatttctgct tcgttttcta gttcttttgc tttatagctt tctaaaattt
     2581 cttcttttac atcttcaatt gctgcttcac gtgctttttt ctcttctgtt ttgatagctg
     2641 ctttcatttt gccttcactt gctgctttta cttctgcttc aagttcagga tcgcttacga
     2701 aaagttcaat ttcgcgtttt tctttaccaa ctgcagcgat aatttgttgt tggaattcac
     2761 aaagacgttt aatttcttcg tgaccgaaca tgattgcttc aagcattgct tcttctgaaa
     2821 cttctttcgc tccagcttct accatgttga ttgcatcata agttcctgca acggttaagc
     2881 taatatcact tttttctgct tgttcgatag ttgggttgat aacgtatttt ccatcgatac
     2941 gacccacatc cacaccagcg atcggtcctt caaatggaat atcggaaata actaatgcaa
     3001 cagaagagcc aagcattgct gccatttctg gagaacaatc ttgatccaca ctgaaaacag
     3061 tagatgtaat ttgaacttca ttacggaaac cttctgcaaa taatggacgg attggacggt
     3121 caattagacg cgctgttaat gtcgcacggt cactaggacg tccttcacgt tttaaaaatc
     3181 caccgggaac tttaccaacg gagtacattt tttcttcata gttaactgtt agtgggaaaa
     3241 agtcgcctgg acgtggtttt ttagaaccta ctgctgctgt taaaacgacc gtatcgccgt
     3301 aacgaattaa ggctgctcca cttgcttgtt ttgctaattg acctacttcg acagataatg
     3361 tcttacctgc ccattctgtt gaaaatactt gtttttcaga catattttaa tctcctttga
     3421 ttaggaaaaa cacgaaccag aaactttacc atgcataaga atgttcacgc acactttaga
     3481 ttttctaaag cacacatgaa tccaaaaacc tgctaaaaat agcgattttt gaagcacgtt
     3541 tttggattca tgcgataaag tttcatttct tcggcgtgtt ttccaaaatt tagtatagtt
     3601 aatactcaaa aaaaagcggg aacttttggt atcccgcttt cgtctggttt ttatcgacgt
     3661 aaacctaaac gtttgataag ttcgcggtaa cgttgaacat cttttttacg taggtaagtt
     3721 aataggttac gacggtgacc taccattttc attaatccac ggtaagagtg atgatctttt
     3781 ttgtgtacgc gaacgtgttc atttaagcta ttgatttcag cagttaatac agcgatttgt
     3841 acttctggtg aaccagtatc tgtatcatgg acacggtact ctgcaataat ttcatttttg
     3901 cgttcttgag ttaaagccat ttctttccac ctccttctaa aatatcccca attactgagc
     3961 caagcgtcgg tgagtcgcaa aagccaagta atggttctgt tcgtacagat ttaaagatac
     4021 actatttagg ctctaaaagc aagcagaaat agtcgtttaa tcctctaaat tagcaaaaaa
     4081 tgctcttgta tcttgttcgt ctttttctaa ctgagcaatt aaaccttcta ccccattaaa
     4141 tttaagttct ggtcggaaaa attgatacca ttcaatttct gcttcttcgc cgtaaatttc
     4201 gcggtgaaaa tctagaatat atacttcaat ggacagcgct tgatcgtctt taaacgtgat
     4261 attgtagcca atgctagcca tccccaaatg agtttccccg ttcacgcgaa attttactgc
     4321 atagacacca agtttcggaa tcaagtaatc ttcatttaca cggatattcg ctgttggaaa
     4381 accaattgtt ctacctcgtt tatctccgtg aatgacggtt ccttttgttg tatatggata
     4441 gcctagtagt tgatttgctt cttctaactc gccttctata atcgcacgtc tgatatttgt
     4501 tgagctaatt ttatcacttg cagcagtttg tttatcaaca atcgtaactt caaaacgacc
     4561 atcagcatat ttagccaaat cagtcatttt cccttcgcct tttttaccgt aagaatagtc
     4621 gaaaccagct accacatgct gtacatgcaa agcgactaaa taattatcca caaaggcttg
     4681 cggagatagc tcggaaaact gtgttgtaaa gcgaactaca tacataatat ctacgccaag
     4741 ttcagccatt ttttccgctt tatcttcaag tggtgtgagg tatttcactt gtttgcggat
     4801 attacttaaa acaacggatg ggtgcggatc aaaagttaat actgctgttt gaaggccttt
     4861 tttttcagca atttgtttcg cttttttaat gacagcttga tgacctaaat gcacgccatc
     4921 gaaaaagcca agtgccatta ctttgtttat gtcagtccac tcgtccgttg taatcggatg
     4981 atgtaagtaa atcgtcttca tttttgccac ttctcctcta aattcgaatt cctctcatat
     5041 cataatataa gaaagctata gtcgcaataa ctatgcttga tgtaactcga tgactttttc
     5101 tggtttccaa agttcatttt tctctggatg aggtttgtaa attgctgtta atttatcatt
     5161 gaagataagt gcggcacgag gctcattctc tacctctata aataatgatt ttggtaaaag
     5221 gccgccattt aaaactttcg catggatttc ttcatcaatc actaatttgg ccatggattc
     5281 aatgcctttt tcaagtggat ataaaaagct gctatcactc gcttgcatca tttcgtcaat
     5341 ttctgccagt gttaagcaat cttctttttt gaaaaagccg ctacgagtcc gttctagttt
     5401 ggacatgtgc gctggatatc ctaataattc accaatcata actgcaagtg tgcgaatata
     5461 agtacctttt ccacaagata tttctaactg aaaagtcgga ttcgcttcat ttagcgtagc
     5521 ctcgccatct aagcgagtta acgaataaat atccacttgc ctggatgggc gttccacctc
     5581 tataccagct cttgcatatt catacaattt cttgccattg acttttacag cagaaaacat
     5641 agggggaatt tgagtaattt ttccagtcaa tttagtgagc gcggcttgaa gttcatcagc
     5701 ggaaatgtct gctaattcct tggtcataac cgtttcacca gtcgcatctt ccgttgtagt
     5761 cgatttgcct aaagttattt ctgctacgta gacttttcct tcatctgtta cgtattctgc
     5821 tagtttcgtc gcacggccga tacaaattgg aagtacaccc tctacttctg gatccagcgt
     5881 gccagtgtgt ccaacttttt tcgtatgtaa aatctttctt aatttaaaaa cgcaatcatg
     5941 acttgtcatc ccgcgttctt tccacagtgg gataatgccg ttcatcaagc tcctcctttt
     6001 aagaaaaaaa gtttaagaca attcccactt atatcccgtt tgaatgagaa gataaaggga
     6061 ctgccttaaa cttttattta ttattgatcg ttatttaagt cgcgaagcaa ttcatcgatt
     6121 cgatttccgt aagcgatgga attatctatt tcaaaagaca tttctggaac tttacgaagt
     6181 cgaatacggc aaccgatttc agagcggata aagccatgcg ctttcgcaag tgcgagtaac
     6241 gtattttctt tttccttatc tgtaccaaga atggaaatga acaccttagc ttcttgtaaa
     6301 tcaccagtaa catcaactcc tgttacagta acaaaaccta agcgcgggtc tttaatttta
     6361 cgatttaaaa tatcgcccaa ttcttttttc atttgctcac tgacacgatt tgctcgaacg
     6421 ttcaagtgta ttcacctctt tttataactt ctccataact gtctcggcgc gttcccactc
     6481 aggaaaagaa tcaagaaaag caagtacttc tctggcttct ttttctgctt ggatgtgcga
     6541 ggaagatacg atagcaaagc taatttccgc tcgctgccat aaatcctgat aatccgtttc
     6601 agcaatggag atattgaatt tttgttttgc tctcgttact attcgtttca ggatagctcg
     6661 tttttctttg aggttttgcg gttcctgcat gaaaaattca ctaacgactg attgaatcat
     6721 tttctttcaa tttcttccat aacgtacgct tcaatgacat catcttcttt gatatcgttg
     6781 aagttttgta ctgtgatacc acattcgtat ccttttgcaa cttctttcgc atcatcttta
     6841 aagcgtttaa gtgtagcaat ttcgccttca aagacaacaa ttccgtcacg gataatacga
     6901 acgccactat cacgagtaat tttaccatct gttacgtaac agccggcaat tgtacccact
     6961 ttggaaacat tgattgtttg acgaacttgc gcttgaccaa taattttttc ttggaattct
     7021 ggatcaagca tccctttcat cgctgcttca atttcatcaa tggctttata gataacacgg
     7081 tgtaaacgaa tgtctacact ttcgttttct gctgcttcac gagcttgagc ggttggacga
     7141 acattaaatc caataacaat tgcattagaa gctgcagcaa gtgtgatatc tgattcattg
     7201 atagcaccaa cagcagtatg aataatttta acgttaacac cctctacatc aattttgcga
     7261 agagatgcag caagagcctc tacagaacct tgaacgtctg ctttaataat aacgttaact
     7321 tctttcattt cgccagcttt catatgttca aataagttgt ctaaacttac gcggttggtt
     7381 gcagaacgtt gcgctactaa cgcacggctt gcacgagttt caccgatgtt tcttgctgtt
     7441 ttttcatctt caaaaacaac aaagcgatcg ccggcttgtg gtacatcatt taatccagtg
     7501 atttcaactg gtgtacttgg accaactttt ttcacgcgac ggcctaaatc attgaccatt
     7561 gcacgaacac gaccaaacgt gttaccaaca acaattgggt ctccaatatt aagcgttcca
     7621 tcttgtacta gtagagtcgc aactggaccg cggcctttat caagttctgc ttcgataaca
     7681 gaaccgatag cacgacgatc tggatttgct tttaattctt ctacttcaga aacaagtaaa
     7741 atcatatcta acaagttttc aagaccttca ccgaatttag ctgagattgg cgcgaaaatt
     7801 gtatcgccac cccatgcttc aggaactaat tcatattctg ttagttcttg cattacgcgg
     7861 tcagggtttg cttgtggttt atcaattttg ttgacagcaa caataattgg cattcccgca
     7921 gcttttgcgt ggttgattgc ttcaattgtt tgtggcataa caccatcatc tgctgctaca
     7981 actaaaatcg taatatccgt gatttgcgca ccacgagcac gcattgcagt aaaggcagca
     8041 tgtcccggtg tatcaaggaa agtgattttt ttgtcatgga tttcaagttg gtaagcaccg
     8101 atatgttggg tgataccacc agcttctcct aaagtaactt ttgtattacg aagggaatct
     8161 agtaatgttg ttttaccatg gtcaacgtgt cccataatag taacaactgg tgggcgttca
     8221 acaagtttag actcgtcaac cgcttcattt agttcatttt caaagtacac atctaaatct
     8281 gttacatcga ctttaatttc ttcttctact tgtacaccgt agtcgtcaca aattagttcg
     8341 attgcatctt tatctaatga ttggttaatc gttgcaacaa caccaagcat aaatagtttt
     8401 ttgattagtt cagatggttc tctgtataat tttttcgcta attccgctac tgttagagat
     8461 tcgctgaaca caattttttc aggaagttct tttggttttg gcggagttgg cggtactgta
     8521 ctgtggttta gcttcccttt cttcttcgtg ttacgacctt tattattaaa attgccgcca
     8581 cgattcgggc gattgttacc gcctggacgg tttggattgc cgccgcctgg acgattgctg
     8641 ttgttattgt tgttgcgttt ttgtccgcca gcttgttgtt ggttaccact tgattgtgtt
     8701 tgtttacttg tgtttgctgg tttgtttgtc gctggttttg caccttggct tttgtttgca
     8761 gttgctggtt tattagcttg ccctgctggg ttatttggtt tattcgactt ttcattacta
     8821 tttgtcatat ttggtttgtt tggcccctta ctatttccat tttcgttgct agtagtttct
     8881 ttctttggtg cttcggcttt tttatttgtg ccatcaatgg cattatctaa ttgtcttaat
     8941 gcattttcat taatcgtgga catgtgattt gccacttcaa tacctaagtc ttttaatgct
     9001 tcaatgactt ttttgcttga tacttgatgt tcttttgcgt attcatatac acgaacttta
     9061 ctcatgtcgt acacctccgt ataagattca accgagtaat tctgctaatt taacagcaaa
     9121 tcctttatca agtatggcaa ctattgcacg tgtgtctttg ccgattgcac cccctatcat
     9181 ttcccgggta ccggcttttt tcacgacaac attgtagtat tcacacttgt tgcggattgt
     9241 tttctcggtt ttttcggata tatcttctga aatgagaacc atttttgctt tcccatttct
     9301 aactgctttt agtactaatt cttcaccagt ggtaatttta cgtgctcggt tagcgaggcc
     9361 taataaggaa agtgcttttt tatccattcg ttggttcctc gagagacttc acataagtaa
     9421 ttaactcatc ataaaaggac tcttgttccg gcatttttag ttgatgaaaa atggcgtttt
     9481 tctttttcgc tttttcgcat acttctacac ttttaataat gtagaaaccg cgtccaggtg
     9541 ctttgcctgt aggatctatc gtaagcgctc cgtctttcga atacgcaata cgaagaagtt
     9601 cgccttttgg caagcgttca ccggtaataa tacattttcg aagggggatt tttttattac
     9661 gcatgataat tctccttttt actcttcatc ttctgtataa gtttcgctct ctgcatcttc
     9721 cacttctggc gcttctacgt cattacgagg atagatgcct agttcagttg caactgtttc
     9781 acttttaata tcaattttcc aaccagttag ttttgctgct aaacgggcat tttgaccacg
     9841 tttaccaatt gctagtgata actgatagtc tggtacgatt accgttgttg cttggtctgc
     9901 ttcgttcaca ataacatcta acactttgga agggctaagt gcattggcta cgaatgtgaa
     9961 aggatcttct gaccattcaa cgatatcgat tttttcgcct ttaagttcat tgacgatcgt
    10021 ttggacacgt gcgccttttg gtcctacaca tgcgccaact ggatctactt cttcatttgc
    10081 agtgtaaaca gagattttag aacgatctcc tgcttcgcgt gcaacagact tgatttctac
    10141 aacgccgtca tagatttcag gtacttccat ttcaaaaaga cgtttcagta agccagggtg
    10201 tgtacgggat acaaaaattt gcggcccttt tgtcgtcttt tctacttttg ttaaatatac
    10261 tttgatgcgg tcatgtgcat gataagtttc gtttggcatt tgctcgtttt gggacaaaat
    10321 tgcttcgatt ttaccaaggt ttacatagat aaaacgagaa tcttgacgct caacaatacc
    10381 agtcataata tcatcttcgc gatcgataaa ttcatcgtaa atgatgccac gttccgcttc
    10441 acgaacacgt tgggttacaa cttgtttcgc tgtttgagct gcgatacgtc caaaatcttt
    10501 tggtgttact tcaagctcca ctacgtcacc tggtttgtat actggattca gtttgtgtgc
    10561 ttcttccata gagatttcaa ggcgagaatc aaatacttgt tctactgctt cttttctagc
    10621 taaaacacgg atagaaccat tttccatatt taaatctaca cgtacgtttt gtgcatcttt
    10681 gaagtttctt ttatatgcag aagtaagagc agcttcaatt gcttctacta aaacctctct
    10741 tgaaatacct ttatcatgtt ctaacacatg aagagcatct aataattctg tgctcatttt
    10801 ttattcagct ccttattctt tgctttttaa aattgaattg cgagtcttgc tttggctact
    10861 ttgtctttag gaatttcaca agtgattttg cgtgttttgt ccgtgatagt aataacgagt
    10921 gttgtcccgt cataactaac aagcgttcct tcccacattt tacggccatc aattggttca
    10981 tatgaagtaa cgtgaacata tttacttacc gcattttcaa aatcttgctc tttcttcagt
    11041 ggacgttcag ccccaggaga agatacttct aaaaagtagt tttgtgtaat ggggtcattt
    11101 tcgtccattt tttcactaac tttttcgctc acggctgcgc attcatcgat atctacgcca
    11161 ccatctttgt caataaaaat tcgtaaaaac caatttggac cttctttttc aaaggcaata
    11221 tctacgagtt ctagttgaag ttcatccgtg attggtgtaa caattgcttc tacttgttct
    11281 agtactttac tcatttcagc ctccttaaga gatacgcttt tccagctaat tcgtccccta
    11341 cttctgccac aggtgactct ttgacagatt tgcaaaacga aagcgtgggc attggcccac
    11401 gcttggctga gttatcgtag tatttcttaa ataagtttat cacaaattgt gactacaagc
    11461 aagttttgcc cttttttaga atagtgacaa ctgattttga tcaggcaatc cttccaagca
    11521 tccttgatca tccatgtact gaatgattgt tttggatact tttccgcgct gttgtaagtc
    11581 ttctttcgac aaaaactctc cattttcacg agcggcaact atttgttttg ctacattggt
    11641 tccaagactt ggaatcgcat tgaatggcgg aataagtgag tctccgtcaa taatgaactc
    11701 atcagcagac gatttataca aatcaacttt ttggaaatgg aatcctcgag ctagcatttc
    11761 attcgcaatt tctaaaacgg ttaataagtt tttctctttc gttgaagctt ccatcccttt
    11821 atcatttact tctttcatgg ttgctttcac ggcttctttt ccgtttacca tcgatgttaa
    11881 atcgaaatca tcggcacgaa cggtgaaata agttgcataa aaatatagtg gataatgtac
    11941 tttgaaataa gcaatccgga ctgccattaa aacgtaagcg gcagcatggg ctttggggaa
    12001 catgtatttg atttttttac aagattcaat gtaccaaagt ggcactttat tcgccatcat
    12061 tgcttcttcc atttcttccg ttaagccttt ccctttacgc acagactcca tgatcttaaa
    12121 ggctaatgaa ctttctagcc cttgataaat taggaaaacc ataatatcat cacgacaacc
    12181 aattacatct ggcagttcgc atgttttgtt tttgattaat tcttccgcat ttccaagcca
    12241 aacgtccgtc ccgtgggaaa gaccagagat ttgtactagc tcagaaaatg ttgttggttt
    12301 agtttgttct agcatttgtc ttacaaaacg cgtcccaaat tcagggattc ctaatgttcc
    12361 tgtttttgaa tcaatatctg caggcttaac accaagtgac tctgtagacc caaatagttt
    12421 catgacatct ggatcatcgg ttggaatcgt ttttggatcg ataccgctta aatcctgtaa
    12481 catccggata gcagtcggat catcgtgtcc aagtatatct aattttaata cgttatcatg
    12541 aatcgaatgg aagtcaaaat gggtcgtttt ccattctgag tccgtcgcat cagctgggaa
    12601 ctgcaccggt gtaaaatcgt aaacatccat ataatctgga ataacgataa taccacctgg
    12661 atgttgcccg gtagttcgtt taacgcctgt acacccagcg acgagtcgat caatttctgc
    12721 cccgcgaata gtcatattca tatcgcgttc ataatttcga acataaccaa aagcggtttt
    12781 ctctgcaacg gtaccaatcg tccccgcacg gaaaacgtaa tcctcaccaa aaatttcttt
    12841 tgtataagca tgggctaccg gttgataatc ccctgagaag ttcaagtcaa tatcgggtac
    12901 tttatcccct ttaaatccta agaaagtttc gaaaggaata tcttggcctt ctttttgata
    12961 aggggttccg cagtgcgggc aatctttatc cggtaagtca aaaccagaac caaccgaacc
    13021 atcatcaaag aactcagaat ccttacaatt cgggcaaaga taatgtggtg gaagtgggtt
    13081 tacttcggta atttccgtca ttgtagcaac gaaagaagaa ccaaccgatc cccgcgaacc
    13141 aaccagatag ccatctacaa gtgatttctt aacaagctta tgtgaaatga gataaataac
    13201 tgcgaaacca tggccgataa tacttttcag ctctttttct agtctagctt ccacgatttc
    13261 tggcagtttc tcaccataaa gttgatgtgc catcgcataa ctcatatttc gaacttcgtc
    13321 ttctgcacca tcaatttttg gtgtatataa ttcgtctttg attggtttaa ggtcttccat
    13381 ccaatcaacg actaaattcg cattagttac aacaatttct tttgcttttt cttcaccaag
    13441 gaaggcaaat tctttcaaca tttcatccgt tgtacggaaa tgaacatcag gtaattcagc
    13501 ccgattaagc ggatttgctc ctccttgcga atggattaaa attttacgat aaattttatc
    13561 cactggatct ttgtaatgta cattacctgt tgcaacgaca ggttttccag ttttctcacc
    13621 gacgcggacg atatttttca atatttcttc taaagctttt tcgtcacgaa ctagttcacg
    13681 ttcaataagc ggtgcataaa ctggcttcgg ttgaacttca atgaaatcat agaactccgc
    13741 tactttttct gcagcttgca tccctttttg catcattgct tcaaataatt ctccttggct
    13801 acaagcagtt ccaataatta agccttcgcg taattttttt agctgcgagc gaggaatacg
    13861 tggtacccgg taaaagtaat taatattgga catcgtaatt aatttaaaga gattcttcaa
    13921 accaacagcc gtttgtgcgt aaattgtggc gtggaatggt cgcgcgcgct tgtatgcgtc
    13981 gccttctccc atatagtcat ttaaagaatc gtgaaaatcg atgttgtgca tttctttcgc
    14041 atctttaatt aacttccaag ccaaatacgc tgtagcttcc gcatcaaaaa cagcccggtg
    14101 atgttgttca agaataatat tgaatttctt tgtcaaagta ttcaagcggt gatttttaaa
    14161 atgtgggtaa agaaaacgtg ctaattctaa tgtatcgaca accgcatttt ctgctttttc
    14221 tagtccaact ttttcataag cagtgttaat aaaacccatg tcaaaagaag cattatgggc
    14281 cacaagaata tcatcaccgc tccattcttt aaatcttttt aaaacaacat caattggatc
    14341 agaacctttt accatgtcat ctgtaatacc agttaaatta atagtggttg cagaaagcgg
    14401 gtgtccagga tcaataaaag cttcaaattt atcaataatt tcaccatttt tcatttttac
    14461 gccagcaagt tcgataatcg tatcataaac ggcggataaa cctgttgttt caacgtcaaa
    14521 tacgcaatat gttgcatctt ccaaagcaat atgttgatcg ttataagcga ttggcacacc
    14581 atcatctata agatttgctt cgatgccaaa aataaccttt aagccatact tttgccctgc
    14641 tccatacgct tctgggaaag attgggcaac agagtgatca gtaatagcaa tcgctttatg
    14701 tccccaatca gcagcttgtt tgaacagtga atcaacagat gaagtggcat ccatttgact
    14761 cattggagaa tgaagatgta gttctgcgcg tttttcttca gcagtatcaa gacgcttcac
    14821 tccagcgatt tcattgacat cttgcgccat catgattaag tcccgcacga aagtatcgtt
    14881 ttgaacgctt cctctaactt taacccacat accttttttc aaattctgga acatcgccgc
    14941 atcctcgtta tcacgagaaa acatttttat aatcattgaa cttgtataat cagtaatttt
    15001 gaattgtaac aaactacgac cactgcgaag ctctctaatt tctgtcgcga agattaagcc
    15061 ttgaacggta atacgtcgtt cctcatcata aatgtcccca agacgtttaa cttcttcatc
    15121 gtctttaatt ttataaccaa tttggaacgg accagttagt ggagcagctc caccgccacc
    15181 gctttgccct tctgcttgtc gtttttgcat aacttgcaca gcttcagcgg cttttttctg
    15241 atcttcttct tgtttggcca gtgcaaaagc tttatattcc tctgtttcag actggtcaag
    15301 caagtgcatt ttcatggcaa ggcgtggaaa tccagctttc ccgtaacttt caataatttt
    15361 cgtctggaat cgttgctgaa tagtcgcttc ttccatgtca ttatgaaccg ctacttcaat
    15421 aaaatgaggt tctttaaatg taggtttttg ctccattaaa agctttccaa tcatcggtga
    15481 ctgcttccca attggctcta cgattaagtt ccaataatcc tgaatgagtg tttcgtcaat
    15541 tgtttgattt tctggaacaa tttgcatttc tgtttccgca atttggctga acgcacgctt
    15601 cattccaaca tccatcatat ggaaaagtgc tgctggaaaa atttgtggaa cgtgtaaatg
    15661 aaattgccat gttttatttt tcttgtcggc aacgagtttt tcgattttag catcttttgt
    15721 aaattcttcg taagttgtta catcttgtaa accgatttgt gtcattaaca gctgaaatcg
    15781 ttcttgtttt tcttcctctt ttgcagtcat tccgaataac accccttcat ttaaatttat
    15841 aaaagccaga tgtccctcat aacccgtttt tataggaacg agtgaagttt catctggcac
    15901 gaattgctca ataaattatt tatctccaaa gagtataggc agcgtgttta gtaactcatc
    15961 ttgacgaact tcaatcattt cgccagtttt tctgattttc acttcaacta cgccttctgc
    16021 tgctttttta cctactgtaa tacgaattgg taagccaatt aaatctgcat cagcaaattt
    16081 aactccagca cgctctgcac gatcatcgat taacacactg aacccagcat cttgtaaaga
    16141 gctataaagt gtttcggcaa aagcaacttg ctcttcgctc ttcatattaa cgggaattaa
    16201 atgtaaatca aatgggctaa tttgtttatc ccaaacaaaa ccattttcat catttgattg
    16261 ttcagcaatg gcagataaaa tacgtgatac gccaattccg taacaaccca taataattgg
    16321 ctgtgctcga ccattttcat ctaaaatagt tgcattcatt gcttcactat acttcgttcc
    16381 aagtttgaaa atatgcccaa cttcgatgcc ttcagcaaac ttgattacgc cttgaccatc
    16441 tggagataaa tcaccaactt gaatcatccg taaatcaaaa tagctagtaa cggagaaatc
    16501 gcgatctgga ttcacgttaa tataatggaa accatcttcg tttgcaccaa ctaccgcatt
    16561 aacgatatct ttcacagcat tatctgcaaa gacgcgcgtg ttttcaggaa cattgattgg
    16621 tcctagggaa ccaaaattag ctcctaatag ttcaacagca acagctggat ccactaattc
    16681 tacattggtt gcatctaatg catttttgat tttaatatca tttacttcat ggtcaccgcg
    16741 aacgagaacc attatgactt catcatcgac ttgataaagc atcgatttca ttgttttttc
    16801 aattggtact tctaaaaact caacgatatc agcaatcgat ttttgatcag gagtcgcaac
    16861 tttctccata tctttttcta gttcatgcga ttttttctcc atatataaaa ctggagccat
    16921 ttctgtgttg gcagcataat cggaagcatc gctataagca attgtatcct cgccaatatc
    16981 agataatgcc ataaattctt ttgattcatt cccaccgata gaaccagaat ccgcaataac
    17041 agaacggaac tcaagaccac atctagtgaa gatattcgaa taagcttggt gcattaagtt
    17101 atacacttca tccaaacttt cactggttgc gtggaaagaa taggcatctt tcattatgaa
    17161 ttcgcgacca cgtaatagac cgaagcgtgg acgtttttca tcccggaact tagtttgaat
    17221 ttggtataaa gtaagcggca aacgtttgta agatttaact tcatcgcgta aaagtgcagt
    17281 tataacttct tcatgggttg gcccaagcgc aaagtcgcga gaagcgcggt cttttaggcg
    17341 cattaattct gggccgtaat cgttccaacg accagattcc tgccaaagtt ccgcaggctg
    17401 aagcgcaggc attaacagtt ctgcagcgcc aattgcttct agctcttcac gaataattgt
    17461 ttcgattttt cgtaacatca atgttgcaag tggtaaataa ctataaatcc cactagctgt
    17521 ttgtcttata aaaccagcac gaagaagtaa ttggtgactc tttacttctg catccgctgg
    17581 tacttctttt aatgttggta taaatgtcat cgtttgacgc atttaaaaca cccctttttc
    17641 cctttattag tctatctctt ttttagaaaa atgcacgttg aatatcgttc catgtcacaa
    17701 gaatcatcag aaccattaaa agtgcaaatc cagcaaaatg gataatgcct tcttttttag
    17761 ggtcaattgg tttgccgcga acgagttcgt ataagaagaa cattaaacgt ccgccatcta
    17821 gtgctggtaa cggtagtaag ttaacaattc ctaagttaat acttaaaaca gccgtccagt
    17881 ttagtacagt cataaagcca tattgaacga cttgttgcgt acttgtgtaa atccctactg
    17941 ggccatttag catatcgagc gaaaatccgc cagtaaacat gtttcctaga atcgtaaata
    18001 tttgtacaat ccaattccat gtttgcgtaa atccattcgt aattttagca gtaaaagagg
    18061 agtccattgg tgtctctaca ccgatttttc ctacgtcttt gccattttct ttttgtgttg
    18121 cgggtttgac atcgatatct tgtgtcttgc catctcgctc aattttgaag tcaagtgttt
    18181 ttccggggtt ttccgaaaca ctttgaacaa tatcggtcca agatttcgtt tcttttccat
    18241 tgatggaaag aacctcatcc ccttttttta gaccagcttc agcagcagcc ccgtccggta
    18301 gaacattccc aagcgtatta tcggtgcttg gaacgccccc ttgtacaaaa gcaagtgctg
    18361 tgaaaattaa aatagctaaa ataaagttaa aaagcggtcc agcaaaaatg gtcattgccc
    18421 ggtttcctaa tgatttagca ttaaaagaac ggtcatatgg cgtaatcatc gtttcgattt
    18481 taccatcaat cactaaggca tcacgctcta cctgatagcg aactttcttg gtgtcatcgt
    18541 aatcttcgta gccttcaatg aaaagttctt tctctaaatc acagagagaa acttctattg
    18601 gctgcgcgtt tacatattga tctttaccat taacaatgat tttgctaacc gtttcttccg
    18661 gagttaattc tagccctact cggtaaccag gttttagctc gatttcctcg ccatcttccc
    18721 cagccatccg aacgtaacca ccaatcggca ataagcgaat cgtatattgc gtttcttttt
    18781 tacgataagc aaaaattttc ggtccaaaac caattgaaaa gtcttttacc ataattccag
    18841 cacgttttgc aaaaagaaaa tgtcctagtt catggaaaaa tacaatcagt ccgaatacga
    18901 aaataaaagc aataatagtt gtcaaaatag cttcacctct ataaaagtgt ctttacatac
    18961 gcgcgtgttt cttgatcgac ttgtaaaatg gtatccaagt cagggtcaga aatgctagta
    19021 tgacgattca ttgcattctc aacaagtgct tcaatattat aaaaagccac ctgtccattt
    19081 aaaaagccag ccacagcaat ttcatttgcc gcatttaaaa ctgtcggcat tgttccacct
    19141 attttaccag cattatacgc gagtttcaat gccggaaatc tttcataatc cactttttca
    19201 aaatgaagtg cggaaaaatc agtaatccgg aattcttttt catacggtat ataaagtctg
    19261 tcgggatagg ttaaagcgta ttgaattggc atccgcatat ctggtgtacc aagttgcgca
    19321 atgaaacttc catccacgaa ctgaaccata gaatggataa tactttcgcg ctgtataacg
    19381 acttctatat catcgtagtc cacaccaaac agccagtgcg cctccatcac ttctaaaccc
    19441 ttgttaaaca tcgtcgctga atcaattgtt aatttattcc ccatattcca gttcggatgt
    19501 tttaacgctt ctttcaccgt aacctcgctg agttgttccc tcgtcttatc tcggaaactt
    19561 ccaccgctcg ctgtcaaaac tagtttttcg attctttccg tattttctcc gtttaatgct
    19621 tgtaaaatag cagaatgttc gctatcaaca ggtaatagtg aaatgttttt ttctttcgcc
    19681 gcacgcatga ctaaatgtcc agccgtaaca agcgtttctt tattagcaat tgcaatggcc
    19741 ttcccagctt cgattgcatc taatgtcgga agtaagccaa cgctccccat aactgcattt
    19801 aaaagcacat ctccatctaa ataggtcgct acttctctaa gcccttctaa accattaaaa
    19861 aatttcacgt ttgggaattc tgcttctaat atcacacgat ctctcgtatg ccaaacagcg
    19921 accattttgg gtttaaattc ttttataatc gccctaccac gttccatatt acgcccaaaa
    19981 ctaagcgcaa caatttgaaa tttttcaggg ttttcgcgaa tgattgcaag cgtttgtgtt
    20041 ccaatagaac cagttgcacc tagcaaaata atttttttca ttatcccatc tccaattaaa
    20101 taatttgaag tatatgtagc agaggtaaaa cgaacaacaa gctatcaaag cggtctaaaa
    20161 taccaccatg ccctggtaag attttcccag aatcttttac accataaaag cgtttcaaag
    20221 cagattcgac caagtctccc aactgtccaa aaatagaaag aaaaactaaa agcgctagta
    20281 cgagtgcaat atttcctggt agctcagcaa aataataaaa gcccccagca atgacaagtg
    20341 cacatacaat cccgccgata aacccttcca ccgttttgtt tgggctaaca ttcggagcta
    20401 atttgtgttt tccaatcgct tttccaataa aataagcccc tgtatcagtt gaccaaacaa
    20461 taaataaagc aaaaagtaca tacattaacc cagcttcacg agttaatgcc aagtaatgga
    20521 aaccaaatcc tgtataaaaa gcggcaacca tacaaatacc aacttgatca aaatggaatt
    20581 tatttcgtga aaatacagta ttagcgagta ataaagccat taaaataaaa ataacttcca
    20641 tttcagtaat atgcagtgta tctaaaaagt ccaaatatct atctggcacg acaactaacc
    20701 acattaatag taaagtaatt atcccattca tcgaaaaaat tcgttgtttt gtcattacaa
    20761 gtacttcata taaagcaatc gttgctagta aaatacttaa tagttcaaat ggaattcctc
    20821 cgtagacaac gaatggaata aaaaatataa gcgcaacaac tgcagtaata attctcgttt
    20881 tcaatctttt ttcctcccta gagccctcca aaacgacgtg accggttttg atattcaata
    20941 attgcctgta aaaaatcttc ttttgaaaaa tcaggccaat gtgtatccgt aaaataaaac
    21001 tcactatacg ccagttgcca aagcataaaa ttacttaatc taagctcccc actcgtccga
    21061 atcaacaagt caggatcacc caaaccgcta ctcatcaaat gatcatttaa tttttcttct
    21121 gtcagatcat ctgcactttt ccctttaagc tctaattctt tcatcgcttc tttggcagca
    21181 gtaataattt ctgaacgtcc accgtagtta agtgcaaagt taagcgtaag ccctgtgcaa
    21241 tgcgctgtat cagctatggc tttctctacg gcacgcatcg tatgattagg taaattttct
    21301 ctgtacccca tcacattaac acgaacattt tcttcaatca actctggtac aaaagagtca
    21361 aaaaattcta caggaagttt cattaaaaaa tccacttcat ctgtaggtct cttccaattt
    21421 tcagttgaaa atgcataaag cgttaaaaca tcgatgccaa ttgcattagc ataacgtgtc
    21481 actcgcttta cgacatccat accttcttta tgcccagcaa tgcgcggcaa aaaacgtttc
    21541 ttcgcccacc ttccattccc atccatgata atagctacat ggcgcgggat aggcaaatct
    21601 tctgcaagtt cactatttaa tatattttca tcttgtcgaa atagcttttt aaacatcata
    21661 aatcctccaa ttgatacact tcttagagca tgtctatacc tataataaca aaaaagaatc
    21721 aattaatgta ctaaaaattc catgtgaaca gatgagagtt tcatgagagc gatggaattg
    21781 cccattaaaa aacattccta acccaacaca tatggaaaga attaggaatg tcgcttcaac
    21841 ttaaaaggtg tttaacccta tttgttacta tttgtaaaag tatcaattaa acttctaaga
    21901 tttccgcttc tttgtctttc gtgatgctat cgatgttctt gatgctttca tctgttaatt
    21961 tttgaacgtc ttcaccataa gaacgcaaat catcttctgt gatgtcgcca tttttttcta
    22021 gttttttcaa ttcttcatta gcttcacgac gaatgttacg gacagcaact ttcgcttctt
    22081 cagcttcttt tttcacttct ttaaccaact ctttacgacg ttcttccgtt aattgtggaa
    22141 tagataaacg tagtacagaa ccatcattat ttggagtcaa acctaaatcc gatttcaaaa
    22201 ttgctttttc aatttcacct aaaatagttt tatcgtaagg tgtaattagt aacattctag
    22261 cttcaggaac gctgatagaa gccatttggt tcactggagt agctgctccg taataatcta
    22321 cagataaacg gtcaagtagt gatgcattcg cacgaccagc gcggattgta cctaattgtc
    22381 ttgttaatgc ttgttctgct ttttccattt tttctttgga tttcgataat acttctttac
    22441 tcattatttt ttccccctaa cagtagtccc gattttttca cctaaaataa cacgtttaat
    22501 attattgcct tgttctgtaa acgagaagac gattaatgga atatcgttgt ccatacttag
    22561 agaggacgca gttgtatcca taacttccaa tccttcttta atcacatcaa ggtaagataa
    22621 ctcttcgtat tttttcgcat tttcatctag ttttggatca gcattgtaga caccatctac
    22681 attatttttc gccattaaga taacatctgc ttcgatttca gccgctctaa gtgctgccgc
    22741 tgtatctgtg gagaagtatg ggttacctgt tccacctgca aaaataacga cgcgaccttt
    22801 ttcaaggtgg cgaatcgctt ttcgacgaat gtacggctca gcaatttgac gcatgtcaat
    22861 ggaagtttgt acacgcgttg ctactccaat gttttcaagg gaatcttgta aagacaagga
    22921 attcatgata gtcgcaagca tacccatttg gtcggccgct gcacggtcca ttcccatttc
    22981 actaccaagt ttaccgcgcc agatattccc gccgccaaca acgatagcta cctctactcc
    23041 tagttctact acttctttga tttgagcaga aatcaaattg accacgctcg gattaattcc
    23101 aaagccatca tttccggcaa gtgcttcacc gcttaatttt aatacaactc gtttataatc
    23161 tggggtatcc ataatagcct ccattttcat attctattca tagatagaag agttttccat
    23221 ccaccattat ctattctact aaaaagctgg ctattacaaa agtgttttct accaaaaaat
    23281 aaaaaaacat ttaaatttac tcctagtctt ccttttttta tgcgtaattt ttattattta
    23341 taataatttt tccatccatt taaacagttt tatccttaac tttaatatta tttgtgataa
    23401 aataaacgca taaatagata aaagtgaacg aaaacgacaa aacacatagg a
//
LOCUS       DASEAA010000029        23260 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.029, whole genome shotgun sequence.
ACCESSION   DASEAA010000029 DASEAA010000000
VERSION     DASEAA010000029.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 23260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 23260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..23260
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.029"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..190
                     /locus_tag="U0342_000941"
     CDS             <1..190
                     /locus_tag="U0342_000941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422296.1"
                     /translation="DGEVDEDYYVKLIKLDVEAFLYDKYDKETDLSDQLHDEAETLKE
                     YHLSLDDDGTYMVKEVAK"
     gene            376..570
                     /locus_tag="U0342_000942"
     CDS             376..570
                     /locus_tag="U0342_000942"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422297.1"
                     /translation="MTKQSRKNKEYVYELICSFWNNEKSLGIFKTRAAAERAMYDDID
                     DTPKQIYTDYYEIYKRPIYE"
     gene            585..812
                     /locus_tag="U0342_000943"
     CDS             585..812
                     /locus_tag="U0342_000943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3850 domain-containing protein"
                     /protein_id="HEM2422298.1"
                     /translation="MTKTHELKITPEFFAAVTEGRKTFEIRKNDRDFQVGDILILREW
                     NHEFSGFQIAVEVVYMTDYEQKDGFVVLGIV"
     gene            824..1225
                     /locus_tag="U0342_000944"
     CDS             824..1225
                     /locus_tag="U0342_000944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422299.1"
                     /translation="MTSTIKISEKDKVFQIATKSGWAVKVGMQVTIDGIDFAIYPFYA
                     KSNVFIQVSEVESGGVLINFPVDFIDVFVLDTRDKAIEYYKDNVIPLVQKKIEVNGLD
                     EFRKAIKNAKNYILENFGERPQIKKFEEANE"
     gene            1222..1704
                     /gene="ssb"
                     /locus_tag="U0342_000945"
     CDS             1222..1704
                     /gene="ssb"
                     /locus_tag="U0342_000945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM2422300.1"
                     /translation="MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRPFKNAQGEQ
                     EADFINCVVWRKPAENAANFLKKGSMAGVDGRVQTRNYEDSDGKRVFVTEVVAETVQF
                     LEPKNINAEGATSNNYQNQANYSNNNKTSSYRADTSQKSDSFADEGKAIDINEDDLPF
                     "
     gene            1725..1916
                     /locus_tag="U0342_000946"
     CDS             1725..1916
                     /locus_tag="U0342_000946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422301.1"
                     /translation="MTAETALENINNLSKRLASIRFMANAIAEVTNYQISEIEQMGDE
                     EIEAKYTAYVINEANEYAK"
     gene            1861..2265
                     /locus_tag="U0342_000947"
     CDS             1861..2265
                     /locus_tag="U0342_000947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1064 domain-containing protein"
                     /protein_id="HEM2422302.1"
                     /translation="MRRNIRRTSLTKQTSTRNKYNAKKVVIDNIKFDSKAEAAYYQQL
                     KLLKMTGEVVSFDLQPEFVLQESFRKNGKLYRAIKYKADFLVRYNDGHEELIDVKGML
                     TNEFILKRKLFEMRYMQSIKCVKLKGGEFLEV"
     gene            2269..2652
                     /locus_tag="U0342_000948"
     CDS             2269..2652
                     /locus_tag="U0342_000948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2481 family protein"
                     /protein_id="HEM2422303.1"
                     /translation="MAVMEMTKNKTRQREIISYIANNDVELNELLKLQKELNNLMKEN
                     TEEKQKTYWTKTFDRIVKKKKWAEITVREFADLRNAGLTCYAIAEHFKVSKSTVLNYT
                     QRNKKEYYQIFDMNEYQRNKEIWND"
     gene            2782..2946
                     /locus_tag="U0342_000949"
     CDS             2782..2946
                     /locus_tag="U0342_000949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422304.1"
                     /translation="MKIEKLNVFTRETICNGKDIEIANYNIELEAISEESFIDTAEKV
                     EKIREFIENL"
     gene            2965..3399
                     /locus_tag="U0342_000950"
     CDS             2965..3399
                     /locus_tag="U0342_000950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422305.1"
                     /translation="MGQLFNLPQVEDINYIQTVRAVRKFFKDYLMLRVMAGSRKLPTM
                     TTTYKLTPPNFSNEFHSKVEDAAIHNVDNVHAAQEAIKKYDAILNQLEHIHRKILFEK
                     FIHNLQDITIMLDIPYEERQYKREKRKAVIELATTLGIEVLN"
     gene            3763..4323
                     /locus_tag="U0342_000951"
     CDS             3763..4323
                     /locus_tag="U0342_000951"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422306.1"
                     /translation="MQTIISLAILGIVAFIGYWAKDLPGIYKAITVENKRKFNELDIQ
                     RESFFRQLRGDDLANTFGEWVSAYTDMDEFVEKAPTILKDMQKKVIMYGSPKTVSILA
                     MLSQHTYIGSGEEDVGKGTRFDNYKLMLYIANLIASLKFDFTGYKIDPMDIVRVRITD
                     YKENETQFKENQQKIETEIQKLGYEL"
     gene            4420..4605
                     /locus_tag="U0342_000952"
     CDS             4420..4605
                     /locus_tag="U0342_000952"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422307.1"
                     /translation="MESNKTLVIWFKNGKTAIFEQVENLDAAEKAIVFDYYGKSTETK
                     RSAAFFLANIAGFAESV"
     gene            4647..5189
                     /locus_tag="U0342_000953"
     CDS             4647..5189
                     /locus_tag="U0342_000953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase small subunit"
                     /protein_id="HEM2422308.1"
                     /translation="MKLTEKQKRFADEYIKCGNATEAARLAGYSSKTANRIATENLSK
                     PVIKGYIDKVLSELEEKRVMGYTEAMQLFTEIARGEMEEEVIVSNGDGFSVVTKSADI
                     NQRVSALKEIVKRHVAGGRDKLQEELIQAQIDKLRADTKQESNQGTTTIIMSNVDEMQ
                     AYLDKKAGGTDERDDTQTTS"
     gene            5158..6489
                     /locus_tag="U0342_000954"
     CDS             5158..6489
                     /locus_tag="U0342_000954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PBSX family phage terminase large subunit"
                     /protein_id="HEM2422309.1"
                     /translation="MNATIHKQLVDYQVINVTDMINPAFYDLWLSKHNHIIAKGGRSS
                     MKSSVISLKLVEKKMANPKSNMVCLRKVANTLYKSVYQQIKWALYEMGVADQFNFGKS
                     PMEIVHKTWGTGFYFSGCDDPAKLKSMKIPVGYVSDLWFEELAEFSGVTDIDVVEDTF
                     IREDLPDGQEVTTYMSFNPPRNPYEWVNEYVDTKRGDDDYLIHHTTYLDDEKGFLSKQ
                     IIKKIEKYKKNDLDYYRWMYLGEVIGLGDNVYNMNLFQPLKAIPADDRLILIDFAIDT
                     GHQVSATTYLSFGLTAKRNVILLNTYYYSPANQVVKKAPSEYSKELRDFMTKVVGNYN
                     TNVDMQTVDSAEGGLRNQYYKDYGVSLHPVAKGKKVDMIDFVCDLLAQGRFYYLDIPE
                     NQIFIEEHRKYQWDVKTINTDKPEVIKEDDHTCDAFQYYVKDNLRKLGLKF"
     gene            6502..8001
                     /locus_tag="U0342_000955"
     CDS             6502..8001
                     /locus_tag="U0342_000955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015967141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM2422310.1"
                     /translation="MINQIIASVKGVMRRMGLLKALKDVKDHKKVNANDEDYKYIDMW
                     KRLYQGHYAEWHNLNYEHNGNPVNRRQLSMNLPKVTAKYMSKLLFNEKVKINIDDKAA
                     EEFVLNVLKTNGFTKNMERYIEYGEAMGGFVIKVYHDGKKNVKVSFATADCMYPLSND
                     SENVDECVISNSFHKNDKYYTLLEWLEWKGEKVEVYTVTTELYQSDDPNELGTKVSLA
                     LLFDDIEPVAPLSKFTRPTFTYIKPNIANNKNLTSPLGISIYANALDTLKTLDLMFDS
                     YYQEFKLGKKKVLVPSSFVKTAVNLDGSTTNYFDSTDEAFFLYQGDQDADGKSVKDIS
                     VEIRSTEFIESINAMLRIYAMQVGLSAGTFTFDENGLKTATEVVSEKSETYQTKNSHS
                     QLIEQGIKEMIVSILEVGKFIEAYSGDIVELDTITVDFDDSIAQDEDTTINRYTNAKN
                     QGMIPLKIALQRAWNITEAEADEWAEMLAKEKQAEMPNNDMTGIFGEEE"
     gene            8007..9146
                     /locus_tag="U0342_000956"
     CDS             8007..9146
                     /locus_tag="U0342_000956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage minor capsid protein"
                     /protein_id="HEM2422311.1"
                     /translation="MALTPRQLDLFVQPVVDVYTTLENELFTLIVRRLKTKKNISADN
                     VLAWQIEKLNQVHALDQQMIERISKASGVSAKKLFSIVKDAGYSDLTQVDNYFSKLAE
                     TGAVLPLVSDGQTIVDKVMRSYFKLAQSNYNRVNQTMLSQARQIYSDIIHETTQSVLA
                     GLKTHRQALAETVTKFAENGVPALVDKANKRWTPEAYVRTVTRTTVNSVYNSVEDERM
                     NEYGVDLVRISQHVGARPTCSIVQGKVICLLSVEETKTKYGNKYMSIYSPELRYGYGD
                     GIFGCNCRHHRFAFVEGINIAPGENELIDEEENKRVYMLSQQQRLMERDIRAAKRKLS
                     AAEELGDELTVKKAKQAVRTKQSKLRAFVKTHNLTRQYSREKVYA"
     gene            9225..9815
                     /locus_tag="U0342_000957"
     CDS             9225..9815
                     /locus_tag="U0342_000957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage scaffolding protein"
                     /protein_id="HEM2422312.1"
                     /translation="MERDFLKELGLEKETIDSIMVEHGKSIQNEKDKVTSAEAERDGL
                     KSQLAQRDDDIEALKTDSGTSKSLKAQLETLQDNYETLKKDSEAKLVETRKGAALDLA
                     LANAKARNPKAVKALLDNDKLELTDEGLKGLDEQLGALQESDAYLFAQESEAVPKFGF
                     SGNPTAPAGFSGSLKENLKSDSFNLTKFLTEKGESE"
     gene            9815..10816
                     /locus_tag="U0342_000958"
     CDS             9815..10816
                     /locus_tag="U0342_000958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="coat protein"
                     /protein_id="HEM2422313.1"
                     /translation="MGNEITKLLDVVTPEVFNAYMDNFTSEKSAIIQSGIAVADPSVA
                     QNITAGGLLVNMPFWNDLDGEDETLGDGEKGLETGKITASADIAAVMYRGRGWSVNEL
                     AAVISGDDPLDALMGKIASWWMRREQTVLISVLNGLFAKNGALASSHLLSKPTSAISG
                     NLVLDAKQLLGDSSDRLSLMVMHSAVYTALQKQNLIAFIPNARGEVNIPTYLGYRVVV
                     DDGVPSTGTGAAKVYTSYLFATGSIGRNTGNPAKLTTFETARDASKGNDQVFTRRAFT
                     MHPYGVKFKNAVRDANEITPTNADLAKAGNWEKVYEDKQIGIVGIQHLVEELPASGA"
     gene            10835..11230
                     /locus_tag="U0342_000959"
     CDS             10835..11230
                     /locus_tag="U0342_000959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422314.1"
                     /translation="MPYTTLEFYTNEYAGEHLEQDEFDKLLKHAERKIDSVTFYRIRK
                     SGIESFSEFIQHQIQLATCNQIEYFKEAGGTSELAVSKPDNVSIGRTSISDSNFASTA
                     TSLNSGLIGSDVRSYLAHTGLLYNGVGVR"
     gene            11230..11592
                     /locus_tag="U0342_000960"
     CDS             11230..11592
                     /locus_tag="U0342_000960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2422315.1"
                     /translation="MKVVKPITNAPPLPLDWLIHNISYEAYKEEDRHNQVVYEKGIEI
                     EHVRVDFSKSNQIAGLSDSDRYDAVIFIDAVNSMNVPADFISRSRIFFSGKAYKIVKV
                     IPCYATSENVHHWEIEVV"
     gene            11592..11930
                     /locus_tag="U0342_000961"
     CDS             11592..11930
                     /locus_tag="U0342_000961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2422316.1"
                     /translation="MPIKVNIDLSKAKKNVKKAKEGAQFALINQAAADISLYVPFLEG
                     DLSNQYVIMNDKEIMWTSIYARRLYNGINFNFTLTHHPLAGPEWDQRAKVDKLESWIE
                     VAQKSVEEGL"
     gene            11930..12337
                     /locus_tag="U0342_000962"
     CDS             11930..12337
                     /locus_tag="U0342_000962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="minor capsid protein"
                     /protein_id="HEM2422317.1"
                     /translation="MSLDFLDSVMDAIENNVDLKDMKLRTAILKPESIALLLTPNNDK
                     QGYQDGSYERSFSFNLNGSSKQEMKVLGVLNAIAAYFDKTEIESIQSLNNSFVLEDKE
                     TTSVPNLVSASDDGTFIYSASFKIKLYIESEEK"
     gene            12340..12777
                     /locus_tag="U0342_000963"
     CDS             12340..12777
                     /locus_tag="U0342_000963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2422318.1"
                     /translation="MARIKNAKTKYFVAEIVDGAGEPVWKRLSKWITNVSDDGSDNTE
                     EQGDYDGDGNEKTVVLGYSEAYTFEGTHDREDEAQNLIVAKRRTPENRGIMFKIEIPD
                     TETAIGKATVSEIKGSAGGGDATEFPAFACRIAYDETPKVTKP"
     gene            12707..13039
                     /locus_tag="U0342_000964"
     CDS             12707..13039
                     /locus_tag="U0342_000964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Ig domain-containing protein"
                     /protein_id="HEM2422319.1"
                     /translation="MLRSSQRSLAVSLMTKHQKLQNPEESPSSVEVDKATITLKVGET
                     STITASVLPVGASQEVTFTSSNPPKAKVNASGVVEGVAEGTANITVASKGSPSINKVV
                     QVTVEAAD"
     gene            13092..13514
                     /locus_tag="U0342_000965"
     CDS             13092..13514
                     /locus_tag="U0342_000965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail assembly chaperone"
                     /protein_id="HEM2422320.1"
                     /translation="MTQNNVINIQLEESYQEFQLGTELFRVGLGDEMRRKWIEADEKY
                     KKKLEKLNKYNIDNTDEMSSEEYFTLEEDVKEALTEAYAILLDDEKAFDKCYAQCKDI
                     LKMYQVYNQVAEIIVGSVEKQQNEIQKKYKAKMTKKAK"
     gene            13520..14125
                     /locus_tag="U0342_000966"
     CDS             13520..14125
                     /locus_tag="U0342_000966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriophage Gp15 family protein"
                     /protein_id="HEM2422321.1"
                     /translation="MLSLAFGVNDIYEYEGKEYKLDLAFDNVLRVIDLTEDNSLSDVF
                     RANLAIDVLFADDMPWPRSNEEDKYANIEEKSLVLIDIFTNYIVKENDDGLLYDIDGN
                     KMPSATNNNDEAEEIASYSLTQDADYIYASFLQDYNIDLLDSRGKMHWYKFRALLESL
                     RDDTTIKTIIGIRQAELPSGKGTEKERNELIKLKNRYKLKD"
     gene            14136..19502
                     /locus_tag="U0342_000967"
     CDS             14136..19502
                     /locus_tag="U0342_000967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tape measure protein"
                     /protein_id="HEM2422322.1"
                     /translation="MSDGSVVIEISLDDKKADKQLDAFEKDLEKAGTNAGAALDKAYR
                     EAVSDIASQSKRLKDTFVNAFKSMGSAGSNALKASLNFMRELPSNVQAALSKLASTVK
                     TGFVNAAKASITVIKELGTSIKNTAVNIKNGFFSIAKTVQSSIVSAVKVSINVIKSIP
                     SAIKSAGISIKSALVSSLQAAKSAAISFAQTTVKVIKSIPVAAKTAATAVKNSFVVAY
                     KAVVVAAYMSVKGTISAVKAIPSATKSAALAVSSAMKTAFSAVASAAKTTGTTVKSAL
                     KTGFSAVKSGAKAAGQAGISALKGLGNIAKSTGSLIKSGLVSGFNAAKAAAKGAGAGM
                     REALKNSVEKPAEQARFSLLKLAAALGLIAATKNVVGSAIGRVDTIDTATKSLTVLTG
                     SAKDAQLVMTDLTAAIDGTPIALDAVALGAKKMVAAGMKAANVKPVFTAIADAAYGVG
                     NGSESIDQMTDAISALQASGVAYADDINRLVDAGVPAWQILANSTGKSVGEMKKYVSE
                     GSLESTKAIAMLTKGIEEGTTGMAGNTAKMAGLAKTAGNTISGSFANMKTAAVKSLAN
                     IAENLKGPIIQALDVAKNAFKQFAAVTASPEFQKKLSDLIQKIKEFIPVLIEWAPLLA
                     KVAAGFVAFNIISSVFSKVAKLAGAIKSLTSSGSLLSVVVNTIKGSFVKLAGTLGSTT
                     AAFGVVAAAVGAVIAVIYGMYTAFKENTAGIKSFLSGMWEAVKNSFGKIIDVFKQIVS
                     ALKPVGSGFKDILKYIGVGAWIVLGFALAAVVDIIQVLARIVLVAIKALQGLYYAIKA
                     AFQALHWDLKGAKKSLEQSKDAFVEAGSAIKDAFNKDNYALTGTVEAFKQMGGEAEKT
                     AKKTETSGKKIKETLKLVETTAKQTETTVSKSNQAIDTMLNGGVDQYGKKLSEKTESF
                     LNAAKDLYEQYQEATKKSQDKYSVAMEKAQSLEGDKRKKAIADANKTLVDETTKNNST
                     LLTLQSDYSNMLKTNRWADGQELTAQQKKFLQQQTTDIQTELAKQNQLYVEANLLRLE
                     QGKSLNEKERNTSLEVQKSLYEEKKKAVETGEKSLADLKKKKADASTETEKANYQIQI
                     DEQTKKNKTLSTNLKNWATEMNAIIANGGTLNAETFANGLSQLGNISDEQLSALWQNF
                     VSTSTSIDNTLSGLAAIMGQRGGEGVQAFVTALQSGDYTTAALNINNDVMNTLSTLPN
                     GMFQNGQSGKDQFITAIKSGDFQGAGKFLLDGVKLGASPLPGEMNNIGKQGGNANADG
                     LKSTAEANKSAGAELKNNAKNGAFDPNLFKMTGSNNASGFNSGILDGKGNAFSAGTGI
                     GNSAKSGAGSVDSSGVGSDFASGYVNGILSGMGAVGEAAGSLANKALQAVKDAQKSKS
                     PSKKAKKLGGDFGSGYSLGIASKTKAVNKAASNLVAGALGTESQIKKLSSTLKDKISS
                     AIDAGLHSKNKSRGQLKQAKALNSIEGYIVQQTNRLAATAKKRDKVVAQLKAANTKMA
                     DLTKQSKEYAASITEKMQSYGSISNVDAENPQSIQAEMQKRLKEIKAFQANVEKLRKK
                     GVSKDIISDILESGVENGSSYAQALAKSDAKTIKAINSTQNQINSASKSMGNTAANAM
                     YSAGINAAKGLINGLNSQKKQLENTAKSIANTITNSVKKALRIHSPSRVAIELGKFFT
                     DGLGNGVLAGAKGAVQSTNKMVDKVVNAASNLTVPAITLPKISAEKALGLKSVDLNRT
                     ITVKTIIDNKTKESSNADLIKAIKESGAKPVILNLDGEVLANNSNNRIGSMTDLGLYG
                     GGLL"
     gene            19499..20326
                     /locus_tag="U0342_000968"
     CDS             19499..20326
                     /locus_tag="U0342_000968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012582412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail family protein"
                     /protein_id="HEM2422323.1"
                     /translation="MNKKTDLYLMQANKIIKLNEKHNFEISEVSRASPQIINNYTSYE
                     FSDGNRSSDSNFDSFDIEFTCRFKTNGNIDYHVRLDELFEDIFIRKEYYIFHTKTPGK
                     KYCVHPAPFDIDRKGAGHAQFTLRFEVFKGFSESLGTSLSPFAFSEGIWQAGQGIVSQ
                     NYKYKHTSNRFIVYNAGSFDIDPRMHDLRITIKNCRSDGLLTINNKSTGEKFVFNEKI
                     YAYDTIELDGSNILKNGVRCGRKTNLGLISLLSGGNEIEIENVSNIETTWDFPFLYK"
     gene            20341..21363
                     /locus_tag="U0342_000969"
     CDS             20341..21363
                     /locus_tag="U0342_000969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012582413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2422324.1"
                     /translation="MDIFVSDYEKQYKEILTGFDPTTFSETWVENQQWQLDFYVEKTR
                     NNQDVFDLLNHESSVYLDGQEFVVKQLKRGAVGKIVYSEVTATHIYFTMQDDYQYNAI
                     SGSKSAKDCLTHIFAADKQGFSFELIDKNKVLENITQENFGNGNLLKLVQEVLEDYKL
                     VMLADNKRLTFIPSEDYGEHTENEIRYNKHTNEVDFDIDTLSLRTQIKGYGKVDSNGN
                     NYFPPVTFTSPESAKWGVRIQEPLSDERYTTSSSMLRRLKLELQDYPATTGNISLKLK
                     YECGKGDYVMFVYEPLGLLYEVQIVAYKKYIFTNKPPELTLSNNKKTMVSIMVQLAKA
                     IKRGAK"
     gene            21364..22389
                     /locus_tag="U0342_000970"
     CDS             21364..22389
                     /locus_tag="U0342_000970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743413.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422325.1"
                     /translation="MDLKKWQDPLMNSELQQNYNDNLVKLAGSLEKANQDMTHVNQRI
                     SNLVIKSGGNESNEVVDARVSSLVPETEFTTLNDRINYAENALITGVGKLSTNVFDLM
                     DKYNDIDTILKRLYGLDSSNIEIFVDDARGDDIAGTGEIDAPFKTINKAVMTLPRVLN
                     SNSVNIWIVPGRYNEDVVIPPIMGGDIYIRSTNFETVDPTSSTGCQVRSISATGSNGY
                     LYIAGLEETNTAGTTKNYFIKATRCGFVRITKCRMAFNTKAIDPFTAVFIDACSADVN
                     GCYFASQNVDVRGYNTARVEVQNIVHGAKSAIGLYPQSADIFNLNSGTWEADTPTKLS
                     GGGVVRT"
     gene            22386..>23260
                     /locus_tag="U0342_000971"
     CDS             22386..>23260
                     /locus_tag="U0342_000971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HEM2422326.1"
                     /translation="MTENVIHKNGVYDFNVTTQEDKPLQKSVFYTQDSGGTARLIFNI
                     DKDNQDLVLSSAAELELAMILAKGTESESKYLVKPTIIDGVRGIAEYSLTDSQIAHAG
                     NAIAELYIKYKNSQAMRVYKFSFEIKKALIDSDFFPVSEFYVERWDDYEKIFDESFER
                     LNTKLDDVDKKADDLKTQFDDMQPSQFAQKTDLNAHVNNADIHVTAADKTNWNSKETA
                     SSAQAKADKALADAKTFFELASAVQSVTLTPKNGFVASQPLVARYIKFGNRFLVIVSG
                     IVGKGTGNGTGICAT"
BASE COUNT         8281 a         3747 c         5074 g         6158 t
ORIGIN      
        1 cgatggagaa gttgatgaag attattatgt taagttaata aaattagacg tagaagcatt
       61 cttatacgat aaatatgaca aagaaacaga tttgagtgat cagttacacg atgaagctga
      121 aacattgaaa gagtatcatt tgagtttaga tgatgacgga acttacatgg tgaaagaggt
      181 ggcgaaataa tgtgtgagta ttgtaagaat gactctatga tgaataacga gcctttacta
      241 agttttgatg aagagtataa agaacctggt gttgttagac tagatagcac tggcaactta
      301 ggagttttca gctactacgg tttaacagct aggaatatca attactgtcc aatgtgcgga
      361 aggagtttgg aataaatgac taaacaaagc cggaaaaata aagaatacgt ctatgagttg
      421 atatgtagtt tttggaacaa tgagaagtcg ctaggtatat tcaaaacaag agcagcagcg
      481 gaaagggcta tgtatgacga tatagacgac acgccgaagc agatttatac agattattac
      541 gaaatatata aacgaccaat atacgagtga aaggaagcgt ctaaatgact aaaacacacg
      601 aattaaaaat aacacccgaa ttttttgcag ctgtgacgga aggacgaaaa acgttcgaaa
      661 ttagaaagaa tgaccgcgat ttccaagtag gagatatttt gattttacgc gaatggaacc
      721 atgaattttc aggctttcag atcgctgttg aagtagttta catgacggat tatgagcaaa
      781 aagacggatt tgtcgtctta gggattgtat agggggagaa caaatgacta gcacaataaa
      841 aatatctgaa aaagataaag tgttccagat tgcgacgaaa agtggatggg ctgtgaaggt
      901 ggggatgcaa gtgacgatag atgggataga ctttgcaatt tatccgttct atgcaaaaag
      961 caatgttttt atacaagtta gtgaagttga aagtggcgga gtattaatta attttccagt
     1021 cgattttata gacgtttttg ttttagacac tcgagataaa gcaatcgaat attataaaga
     1081 taatgtgatt cctttagttc agaaaaaaat cgaagtaaat ggattagatg aatttagaaa
     1141 agcaattaaa aacgcgaaaa attatatact tgaaaatttc ggagaacgac cacaaattaa
     1201 aaaatttgag gaggcaaacg aatgatgaac cgtgtagtgc ttgtaggacg attaacgaaa
     1261 gaccctgaat tacgttacac tccagctgga gtagctgttg cgacttttac gctagcagta
     1321 aatcgcccat ttaaaaatgc acaaggagaa caagaagccg atttcattaa ttgtgttgtt
     1381 tggcgtaaac cagcggaaaa cgcagctaat ttcttgaaaa aaggaagcat ggcaggcgtt
     1441 gatggacgtg ttcaaactcg taattatgag gacagcgacg gtaaacgcgt tttcgttact
     1501 gaggtagttg ctgaaacagt tcaattctta gagcctaaaa atatcaacgc agaaggcgct
     1561 acatcgaata attatcaaaa ccaagctaat tattcaaata acaataaaac aagctcatat
     1621 cgagcagata cgagtcagaa gagtgattca tttgcagacg aaggcaaggc gattgatatt
     1681 aatgaagatg atttgccatt ttgagcgaaa gggtgaataa aaaaatgaca gcagaaacag
     1741 cgctagaaaa tattaataat ctgagtaaaa gattagcgag catcagattt atggctaatg
     1801 cgattgcaga agtcacaaac taccaaatta gcgaaattga acaaatgggg gacgaagaaa
     1861 ttgaggcgaa atatacggcg tacgtcatta acgaagcaaa cgagtacgcg aaataaatac
     1921 aatgcgaaga aagttgttat tgacaatata aagttcgata gcaaagcgga agcagcatat
     1981 tatcagcaat tgaaactatt aaaaatgact ggtgaagtag ttagtttcga tttacagcca
     2041 gagtttgtgt tacaagaaag ctttcgaaaa aacggaaaac tgtatcgagc tattaaatat
     2101 aaagctgatt ttctcgtacg atacaatgat gggcatgagg agttaatcga cgtcaaaggc
     2161 atgttaacaa acgagtttat actcaaacga aaactatttg aaatgcgtta tatgcaatca
     2221 attaagtgtg tgaaattaaa aggcggggaa tttttggagg tgtgataaat ggcagtaatg
     2281 gagatgacaa agaacaaaac aaggcagcgg gaaattatta gttatatagc aaataacgat
     2341 gtagaactaa acgaattact aaagttgcaa aaagagttaa acaatctgat gaaagaaaat
     2401 acagaagaaa agcaaaaaac ttattggaca aaaacgtttg atcgcatcgt gaaaaagaaa
     2461 aaatgggcgg aaattacagt tcgtgaattc gctgatttac gtaacgcagg actaacatgt
     2521 tacgcaattg cagagcattt caaagtgtcg aagtcaacag ttttaaatta tacgcaaaga
     2581 aataaaaaag aatactatca aatttttgac atgaacgaat atcaacggaa taaggagata
     2641 tggaatgatt gataaagtag cgaaatttat aggagctttg actatttacg ctttatgggt
     2701 cctagtatta atttttgtac taggattagc agttaaaggg attctatggg cttggagcaa
     2761 tatgttttag gaggatttta aatgaaaatt gaaaagttaa atgtatttac cagagaaaca
     2821 atttgtaatg gaaaggacat agaaatagct aattataata ttgaattaga agcaattagt
     2881 gaagaatctt ttattgatac agctgaaaag gttgagaaaa taagggagtt tatcgaaaat
     2941 ttataaagtg atgggggcga ctttatggga caattattca atctaccaca agttgaagat
     3001 attaactaca ttcagacagt cagagcagta agaaagttct ttaaagacta tttaatgctg
     3061 cgtgtgatgg caggaagtcg taaattgccg acaatgacaa caacatacaa attaacgcca
     3121 ccgaatttca gtaatgaatt tcattcaaaa gtagaagatg ctgcaattca taatgtcgat
     3181 aacgttcatg cagcacaaga agcaataaaa aaatatgatg ctattttgaa tcaacttgag
     3241 cacattcata gaaagatact gtttgagaag ttcattcata acttacaaga tataactatt
     3301 atgcttgata ttccttatga agaaaggcaa tacaaaagag agaaacggaa ggctgttatt
     3361 gaattagcaa caacacttgg gattgaagtg ctaaattgaa atggcacttt ttgggcactt
     3421 tttgagcaaa aaaaggtgat aaaatgttat tagtgagaag tgaagatgat tacaaaaata
     3481 aaatcttata ttgagtctgc gctccacttc tcatttataa tcttatgatg atatagcagg
     3541 agattgctat gttgcctggc agaggctttg tatctggcca ttagtctcaa cagatgacga
     3601 cacttctgtt caatctcata tcctatccac actggatgta aaacacgcat gtggcgctga
     3661 ctggtgcgtt aaccagtttt aaaaattata atcctttcca tctgttaata attgagcagg
     3721 tggtttttat ttggtatagt gaagataaaa gggtggatta tgatgcaaac aattatctct
     3781 ttagcaattt taggaatagt agcttttatt ggatactggg ctaaggacct tccggggata
     3841 tacaaagcta taactgtaga aaataagagg aaatttaatg aattggatat tcaacgagag
     3901 tcttttttta gacaactcag aggggatgac ctggcaaata cgtttgggga atgggtgtct
     3961 gcgtatactg acatggatga attcgttgaa aaagcaccta caattcttaa agatatgcaa
     4021 aaaaaggtca ttatgtatgg ttcgcctaaa actgtatcta ttttagcaat gttatctcaa
     4081 cacacatata ttggtagcgg agaagaagat gttgggaaag gtacgagatt tgataattat
     4141 aagctaatgt tatatatagc taatttaata gcctctctaa aatttgattt tacaggatat
     4201 aaaattgatc ccatggatat tgttcgtgtg agaatcactg attataaaga aaatgaaaca
     4261 caatttaaag aaaatcaaca aaagattgaa acagaaatcc aaaaacttgg atatgaatta
     4321 tgagtttatt tgaaataaga catttagttc gaagttaata tattaacagt cccgattatt
     4381 cggggctttt ttgatacata aaaataagga gtgatgaaaa tggaaagcaa taaaacatta
     4441 gttatttggt tcaaaaatgg aaaaacagct atttttgagc aagtggaaaa tcttgatgct
     4501 gccgaaaaag ctattgtatt tgattattac ggtaaatcta ccgaaacaaa aagaagcgcc
     4561 gctttttttc tagctaatat tgctggcttt gcagagtcgg tataagaaaa gtattttatt
     4621 aaaataaagg gagttggtga tatgtagtga aactaaccga aaaacaaaaa cgatttgcag
     4681 atgaatatat aaaatgcggt aatgctacag aagccgctcg tcttgctggt tatagttcga
     4741 aaacggctaa tcgtatagcg accgaaaact tgtcaaaacc agttataaaa ggctatatag
     4801 acaaggtttt aagtgaactc gaagaaaagc gcgttatggg ctatacggaa gccatgcaat
     4861 tattcaccga aatagctcga ggtgaaatgg aagaagaagt aattgtttcg aatggtgatg
     4921 gcttttccgt cgttacaaag agtgctgaca tcaaccaacg agtatcagca ttaaaagaga
     4981 ttgttaagcg tcatgtagca ggcggtagag acaaattaca agaagagctt attcaagcgc
     5041 aaatcgataa gttaagagca gatacgaagc aagaaagcaa tcaaggaaca acaacaatta
     5101 tcatgtcgaa cgttgacgaa atgcaagcct accttgataa aaaggcaggt ggcaccgatg
     5161 aacgcgacga tacacaaaca actagttgat tatcaggtta tcaatgtaac tgatatgatt
     5221 aatcctgctt tttatgactt gtggctatct aaacataatc acatcatagc aaaaggcgga
     5281 cgttcttcta tgaagtcgtc tgttattagt ttgaagctcg tagaaaagaa aatggctaat
     5341 ccgaaatcta acatggtgtg cctacgtaaa gtagctaata cgctttataa gtcagtctat
     5401 cagcagatta aatgggcgct ttatgaaatg ggtgttgctg accaattcaa ttttggtaaa
     5461 tctccaatgg aaatcgttca taaaacttgg gggacaggct tctacttctc tggttgtgat
     5521 gatcccgcta aactaaaatc aatgaaaatt ccagtcggtt atgttagcga tttgtggttt
     5581 gaggaattag cggagttctc tggcgtgact gatattgatg ttgtagaaga cacattcatt
     5641 cgtgaagatt tgccggatgg tcaagaagtt acaacataca tgtcatttaa cccgcctcgc
     5701 aatccttacg aatgggtgaa tgaatatgta gacactaaac gtggtgacga tgattattta
     5761 atacatcaca ctacttattt ggatgatgaa aaaggctttt tatccaagca aatcattaag
     5821 aaaattgaga agtacaaaaa gaatgacctc gattattacc gctggatgta tctaggagag
     5881 gtaattggtc ttggtgataa tgtttataac atgaacctgt ttcagccgct taaagctatt
     5941 cctgcggatg acaggcttat tttaattgat ttcgctattg atacaggaca tcaagtgtca
     6001 gctacaacat atctaagttt cggtctcact gcaaaaagaa atgttatttt gctaaacaca
     6061 tactattata gtcctgctaa tcaagttgtt aaaaaagcgc ctagcgagta ttcaaaggag
     6121 ttgcgggatt ttatgactaa agtagttgga aactacaata caaatgttga tatgcaaaca
     6181 gtagatagcg cagagggagg gcttcgcaat caatattata aagattatgg cgttagctta
     6241 caccccgtcg caaaaggtaa aaaagtggat atgattgact ttgtgtgtga tttgttggca
     6301 caaggtcgtt tttattatct tgatattcca gaaaatcaaa tattcatcga ggaacataga
     6361 aagtatcaat gggatgttaa aacaatcaac acagacaagc ccgaagtcat caaagaagat
     6421 gatcatacgt gtgatgcttt tcagtactat gtaaaagaca atctaaggaa gttaggtctc
     6481 aaattctagg aggtgaaaac cttgattaat caaataatcg caagcgtgaa aggagtgatg
     6541 cggagaatgg gactattgaa agcactgaaa gatgtaaaag accataaaaa agtaaatgct
     6601 aatgatgaag attataagta tattgacatg tggaaacggc tatatcaagg ccattacgct
     6661 gaatggcata atctaaatta cgaacacaat ggcaatccgg ttaacagacg tcaattatct
     6721 atgaatttgc cgaaagttac agctaagtac atgtctaaac ttctttttaa tgagaaagtg
     6781 aaaatcaata ttgatgataa agccgctgag gaattcgtgc ttaatgtatt gaaaacgaac
     6841 ggttttacta aaaatatgga gcgttacatc gaatacggcg aagcgatggg cggttttgta
     6901 ataaaagtgt atcacgacgg aaaaaagaac gtcaaagttt cattcgcgac agccgattgt
     6961 atgtatcctt tgtcaaatga tagcgagaat gtagacgaat gtgttatatc taatagtttt
     7021 cataaaaacg ataaatatta tacgttgctc gaatggctcg aatggaaagg ggagaaagta
     7081 gaagtataca cagtcacaac ggagttatac caatcagacg acccgaacga gcttggtaca
     7141 aaagtaagtt tagcgttact gtttgatgat attgagcctg ttgcgccatt gtcaaagttt
     7201 acacgtccga catttactta tatcaaacct aacattgcga ataacaagaa tctaacgagc
     7261 ccgctcggca tttccattta tgctaatgca ttagacacat taaaaacgct tgatttgatg
     7321 ttcgattcat actatcaaga gtttaaactt ggcaaaaaga aagtattggt gccttcgagc
     7381 ttcgttaaaa cggctgttaa cctagacggc tcaaccacga attatttcga ttcaactgat
     7441 gaagcattct ttttatatca aggtgaccag gatgcagatg gtaaatcagt aaaagatata
     7501 tctgtagaga ttcgttcaac ggagtttatc gagtctataa acgcaatgct acgcatttat
     7561 gcgatgcaag ttggattatc tgctggcaca ttcactttcg atgaaaacgg cttaaaaaca
     7621 gctacagaag ttgtaagcga gaagtcagaa acctatcaaa ctaaaaacag tcattcgcaa
     7681 ttaattgaac aaggcataaa agaaatgatt gtgagcattc ttgaggtcgg gaaatttatc
     7741 gaagcttata gcggcgatat agttgagtta gacacgatta cagtcgattt tgacgactct
     7801 atagcgcaag acgaagatac aactatcaat cgttacacaa acgctaaaaa tcaaggtatg
     7861 attccgctaa aaattgcttt acaacgtgct tggaatatta ctgaagctga ggctgatgag
     7921 tgggctgaaa tgttagcgaa ggaaaaacaa gcggaaatgc ctaacaacga tatgactggg
     7981 atattcggcg aagaggagtg atatagatgg cactaactcc aagacaactc gacttgtttg
     8041 tgcaacctgt tgttgatgtt tacacaacgc tcgaaaatga attgttcact cttattgttc
     8101 gccgattgaa aacaaagaaa aatatcagcg cagataatgt gcttgcttgg caaatagaaa
     8161 aacttaatca agttcatgca ctagatcagc aaatgattga acgaatttcc aaagcttccg
     8221 gcgtttcagc taagaagctt ttttctattg ttaaagatgc gggatacagc gatttaacac
     8281 aagtagataa ctatttcagt aaattagctg aaacaggcgc tgtgttgcca ctagtaagcg
     8341 atgggcaaac gatagtcgat aaagtaatga gaagttattt taagttagca caaagcaact
     8401 ataatcgcgt caatcaaacg atgttatcgc aagcaagaca aatctattca gatatcattc
     8461 acgaaacgac acagagcgtc ttagctggtt taaaaacaca tagacaagca ttagcggaaa
     8521 cagtaactaa attcgctgaa aatggcgttc ctgcgcttgt agataaggct aataaaagat
     8581 ggacaccaga ggcttacgtc cgaaccgtta caagaacaac cgtcaacagc gtttataaca
     8641 gcgttgaaga tgagcgaatg aatgaatatg gcgttgattt agtgcgtatt tcgcaacatg
     8701 taggagctag accaacgtgt tcaattgttc aaggcaaagt catctgtttg ttatctgttg
     8761 aagaaacaaa aacgaaatac ggcaataaat acatgtctat ttactcgcca gagcttagat
     8821 atggttatgg agatgggatt ttcggttgta attgccgtca ccatcgtttt gctttcgttg
     8881 aaggcattaa cattgcacca ggcgagaacg agttaataga cgaagaagaa aacaaacgcg
     8941 tttatatgtt gagtcagcaa caacgattga tggaacgcga cataagagca gctaaacgca
     9001 agctgtcagc tgccgaagaa ttaggcgatg aactaacagt taaaaaggct aaacaagctg
     9061 ttagaacgaa gcaaagcaag ctaagagcat ttgtaaaaac gcacaattta acaagacagt
     9121 atagcagaga aaaagtatat gcctaacatt cgacctgaac gaaagtcgtt aaaagtcggc
     9181 tctcgtgatc gtatcacgta aaaacaacgt aggaggaata agaaatggaa agagactttt
     9241 tgaaggaatt aggcttggaa aaggaaacta tcgactctat tatggtcgaa catggtaagt
     9301 cgattcagaa cgaaaaggac aaggtaacat cagcggaagc agaaagagac gggcttaaaa
     9361 gccagcttgc gcaacgggac gatgatatcg aagctttaaa aactgattcc ggaacgagca
     9421 aatctttaaa agctcaattg gaaacactgc aagacaatta cgaaactttg aaaaaagatt
     9481 cggaagctaa attagtagaa actcgcaaag gtgcagcact tgatttagct ttagcaaatg
     9541 cgaaagcaag aaatccgaag gctgtaaaag ctttactgga taacgacaaa ctagaactga
     9601 cagatgaagg actgaaaggc cttgacgaac agctaggagc attgcaagaa agcgatgctt
     9661 atttgtttgc tcaagaaagc gaggcggttc cgaaatttgg attcagtggc aatccaacag
     9721 ctccggctgg tttcagcggt tcgttgaagg aaaatttaaa atcagattca tttaatttaa
     9781 caaaattttt aacggaaaaa ggagagagtg aataatggga aatgaaatca caaaattatt
     9841 agacgtagta acaccagagg tttttaatgc gtacatggat aacttcacat ctgaaaaatc
     9901 agcaattatc caatcgggaa ttgcagtggc tgatccaagc gttgcgcaaa atattacagc
     9961 gggcgggtta cttgttaata tgccgttttg gaacgattta gacggcgaag acgaaacttt
    10021 aggtgacggt gaaaaagggc tagaaacagg taaaattact gctagcgctg acattgctgc
    10081 ggtaatgtat cgtgggcgcg gatggtcagt caacgaactt gcggcggtta tttcgggaga
    10141 cgacccttta gacgctttaa tggggaaaat cgcttcttgg tggatgcgtc gtgagcaaac
    10201 tgtactaatt tccgtgttaa atggactgtt tgctaaaaac ggtgcattgg caagttccca
    10261 cttgctatca aaaccaacat ctgcaatttc ggggaattta gtattagatg caaaacagct
    10321 tcttggagat tcttcggatc gtttaagctt aatggttatg cattcagcgg tttatacagc
    10381 cttgcaaaaa caaaacttaa ttgcatttat tccaaatgct cgtggggaag tcaatatccc
    10441 aacttattta ggatatcgtg tagttgtaga cgacggagtg ccttccacag gaacaggagc
    10501 agcaaaagta tacacttcat atttatttgc aacaggttcc atcggaagaa acacagggaa
    10561 cccagctaag ttaacaacat ttgaaacagc tcgggatgcc tctaaaggta atgaccaagt
    10621 gtttactcga cgtgctttca caatgcaccc atatggagtt aaatttaaaa atgcagttcg
    10681 tgatgctaac gaaatcactc caacaaatgc ggacctagca aaagctggaa attgggaaaa
    10741 agtttacgaa gacaaacaaa tcggtattgt tggtattcag catctagttg aagaattacc
    10801 agctagcgga gcatgataaa agggggcgaa tattatgcct tacacgacac tagaatttta
    10861 tactaacgag tatgcggggg agcatttgga acaggatgaa tttgacaaac tgttaaagca
    10921 tgctgaaaga aaaattgatt cagtgacatt ttaccgaata cgcaaaagcg ggattgaatc
    10981 gtttagcgaa tttattcagc atcaaataca gttagctact tgtaatcaaa tcgagtattt
    11041 caaagaggcg ggcggaacaa gtgagttagc tgtttctaag ccggataacg tatcaatcgg
    11101 aagaacttct attagtgata gtaattttgc atcaactgct acatcactta atagcggatt
    11161 gattggtagc gatgtaaggt cctatttagc gcatacaggt cttctttaca acggggtagg
    11221 tgttcgttaa tgaaagtagt aaaaccgata acaaatgccc ctccgttgcc tcttgactgg
    11281 ctaattcata acattagtta tgaagcgtat aaagaagaag atagacataa tcaagtcgtt
    11341 tatgaaaaag gcattgagat tgaacatgtt cgtgttgatt tctcaaaatc aaatcaaatc
    11401 gcgggattat ccgatagtga tagatatgac gcggttatct ttattgatgc agtgaacagc
    11461 atgaacgtgc cagctgattt tataagtaga tcgagaattt ttttctctgg aaaagcttat
    11521 aagattgtca aagttatacc ttgttatgcg acctctgaaa atgtgcacca ttgggagata
    11581 gaggtggttt gatgccgatt aaagttaata ttgacctttc aaaagccaaa aagaatgtaa
    11641 aaaaagccaa ggaaggcgca caattcgctt taattaatca agccgctgcc gatatttctt
    11701 tgtatgtccc ctttttggag ggtgatttat caaatcaata cgttattatg aacgacaaag
    11761 aaataatgtg gacatctatt tatgcacgga gactctacaa cggaataaac ttcaatttca
    11821 cactcacaca tcatccgtta gctggcccgg aatgggacca acgggcaaaa gtagataagt
    11881 tagaaagttg gatagaagta gcgcaaaaat cggttgagga gggactataa tgtcattaga
    11941 ttttttagat agtgttatgg atgctatcga aaacaacgtc gatttaaaag atatgaaatt
    12001 aagaacagcg atattaaaac ccgagtcaat cgctttgcta ctgactccaa ataacgataa
    12061 acaaggttat caagacggct cttatgagcg gtctttttct tttaatctaa acggatctag
    12121 caagcaagaa atgaaagttt taggtgtttt gaatgcaatt gctgcttatt ttgataagac
    12181 agaaatagag agtattcaga gcttaaataa cagctttgtg ctagaagaca aagaaacaac
    12241 tagtgtgccg aacctcgttt cggcgagcga tgatggaaca ttcatttata gcgctagttt
    12301 caaaatcaaa ttatatattg aaagcgagga aaaataaaaa tggctagaat taaaaatgcg
    12361 aaaacgaaat actttgtagc tgaaattgtt gatggtgcgg gcgagccagt atggaaacgg
    12421 ctgtcaaaat ggattacaaa cgtgtcagac gatgggtcag ataacaccga agagcaaggc
    12481 gattatgacg gtgacggcaa cgaaaaaacg gttgtgctag gttactcaga agcttacaca
    12541 ttcgaaggga cacacgatcg tgaagacgaa gcgcaaaact taattgtcgc taaacgtaga
    12601 acgccagaaa atcgcggaat tatgtttaaa atcgaaattc cagatactga aacagcaatt
    12661 ggtaaagcga ctgtttcgga aattaaaggt tccgctggcg gcggggatgc tacggagttc
    12721 ccagcgttcg cttgccgtat cgcttatgac gaaacaccaa aagttacaaa accctgagga
    12781 gagcccgtcc agcgtcgaag tggacaaggc gactattacg ttaaaagttg gtgaaacatc
    12841 cactattact gcttcagtat tacctgtcgg agcaagtcaa gaagtaactt ttacttcttc
    12901 aaatccacca aaagcaaaag taaatgctag tggagtggtt gaaggtgtag cagaaggaac
    12961 agcaaacata actgttgcat ctaaaggaag cccttctatc aataaagtag tacaagtaac
    13021 agtggaagca gcagattaat aaataaagcc cttactcaat gtaggggctt ttaaattgga
    13081 ggaaatcata catgacacaa aacaatgtaa ttaatattca attagaagaa tcatatcaag
    13141 agtttcagct tggcacggaa ctgtttagag ttggtttagg tgatgaaatg cgccgcaaat
    13201 ggattgaagc agatgagaag tacaagaaga aactggaaaa gctaaataaa tacaacattg
    13261 ataatacaga cgaaatgagt tcagaagaat actttacatt agaagaagat gtaaaagagg
    13321 ctttaactga agcatatgca attttattgg atgacgaaaa agcattcgat aaatgttatg
    13381 cgcaatgcaa agatatttta aaaatgtacc aagtatacaa tcaagttgca gaaatcattg
    13441 tcggttcagt agaaaaacaa caaaatgaaa ttcaaaagaa atataaagca aaaatgacta
    13501 aaaaagcgaa gtgatttaaa tgctttcgct cgcttttgga gttaacgata tttacgaata
    13561 cgaggggaaa gagtataagc tcgatttagc ttttgacaac gttctaagag tgattgattt
    13621 aacggaagat aatagtttat ctgatgtgtt cagagctaac ctcgcaattg atgtgctttt
    13681 tgctgatgat atgccttggc cacgttcaaa tgaggaagac aaatacgcga acattgaaga
    13741 aaaatcgttg gtgcttattg atattttcac taattatatt gttaaagaaa atgacgatgg
    13801 tttgctttat gatatcgacg gaaacaagat gccaagcgct acaaacaaca atgacgaagc
    13861 ggaagaaatt gcttcatatt cattaacgca agatgcggat tatatctatg cttctttttt
    13921 acaagactac aatattgatt tattagatag tcgcgggaag atgcactggt ataagtttag
    13981 agcattgtta gaaagtttgc gtgatgatac aacaattaaa acgataatcg gcattaggca
    14041 agcggaatta ccttctggaa aaggaacaga aaaagaacga aacgaattaa ttaaactgaa
    14101 aaacagatat aagttaaaag attagaggtg agaacatgag tgatggatca gtagtaattg
    14161 agattagttt agacgataaa aaagcagaca aacaacttga tgcttttgaa aaagatttgg
    14221 aaaaagcagg aactaacgcg ggggcggcat tagataaagc atatagagaa gcggtttcag
    14281 atattgctag tcaatcgaaa cgattaaaag acacgtttgt aaatgcgttt aaatcgatgg
    14341 gaagcgctgg ctcaaatgct ttaaaagcta gtttgaactt tatgcgtgag ttgccttcaa
    14401 atgtacaagc cgcactatct aaacttgcat caacagtaaa aactgggttc gtaaacgctg
    14461 ctaaagcatc tattacagtg ataaaggaac ttggaacaag tatcaaaaac acagcagtta
    14521 atatcaaaaa cggcttcttt tcaattgcta agacagtgca aagtagtatt gtgtcagctg
    14581 ttaaagtatc aattaatgtc attaaatcca tccctagcgc aattaaaagt gctggaatca
    14641 gtattaaatc cgcattagta agtagtttgc aagcagctaa atcggctgct atttcttttg
    14701 ctcaaactac tgtaaaagtt attaaaagta ttccagtagc tgctaaaaca gcggctacag
    14761 cagtgaaaaa cagtttcgta gtagcttaca aagcggtggt agttgctgct tatatgagcg
    14821 taaaaggaac tattagcgct gtgaaagcta ttcctagtgc tacaaaatca gcagcgttag
    14881 cagtaagtag cgcaatgaaa acggctttta gcgctgtagc aagcgcggcg aaaacgacag
    14941 gaacaacagt gaaatcagca ttaaaaacag gatttagcgc tgtgaaatcc ggagcgaaag
    15001 cggctggcca agctggcatt tctgcattaa aaggcctagg aaacattgcg aaaagcactg
    15061 gctcgttaat taaaagtgga ttagtaagcg gatttaacgc agctaaagcg gcggcaaaag
    15121 gtgcaggcgc tggaatgcgt gaagcgttaa aaaattcggt tgaaaagccc gccgaacaag
    15181 ctcgttttag tcttcttaaa ttagcagcgg cattaggact tattgcggct actaaaaacg
    15241 tcgtaggcag cgctattggg cgtgttgata cgattgatac tgcgactaaa tcgttaactg
    15301 ttttaactgg ttccgcaaaa gatgcacagt tagttatgac ggatttaacc gccgctatcg
    15361 acggcacacc aattgcgctc gatgctgtcg cattaggcgc taaaaaaatg gtagcagcgg
    15421 gtatgaaagc agcgaatgta aaacctgttt tcacagctat tgctgatgcg gcgtatggcg
    15481 tcggaaatgg ttcagaatca attgaccaga tgacagatgc tatctcggca ttgcaagcga
    15541 gtggcgttgc ttatgcggat gatattaaca ggctagttga cgcgggcgtt cctgcatggc
    15601 aaattttagc aaattccaca ggtaaatctg ttggagaaat gaaaaaatat gtttccgaag
    15661 gatctttaga atcaacaaaa gctatcgcaa tgttgacaaa aggcatcgaa gaaggaacaa
    15721 ctggaatggc tgggaatact gccaaaatgg caggtctagc aaaaacagca ggtaacacta
    15781 tcagcggttc atttgcaaac atgaaaaccg cagccgttaa gagccttgct aatatcgccg
    15841 aaaacttaaa aggcccgatt attcaagcgc tagatgttgc taaaaacgca tttaaacagt
    15901 ttgcggcagt aacagcaagt cctgaattcc agaaaaaact ttctgattta atccaaaaaa
    15961 ttaaagagtt tatacctgtt ttaatcgaat gggcgccatt gttggcaaaa gtagccgctg
    16021 gatttgtggc ttttaatatt attagtagcg tattttcaaa agtagctaaa ctagcaggag
    16081 cgataaaaag tttgacgtct agcgggtcac tactttcagt tgtagttaat acaattaaag
    16141 ggtcattcgt taaattagca ggaacactcg gctcaacaac tgctgctttc ggcgttgttg
    16201 ctgcggcggt tggcgcagtg atagctgtta tctatggaat gtataccgct tttaaggaaa
    16261 acacggcggg gataaaaagc tttctatctg gcatgtggga agcggtgaaa aactcattcg
    16321 gcaagataat agatgttttc aaacaaatag tatcagccct aaaacccgtc ggaagcgggt
    16381 ttaaagacat attgaaatat atcggcgtgg gggcgtggat tgtacttggt ttcgctttag
    16441 cggctgtcgt tgatattatt caagtgctag cacgaatagt gttagtagct attaaagcgc
    16501 tacaggggct gtattatgct ataaaagcag catttcaagc tctacattgg gatttgaaag
    16561 gtgctaagaa aagcttagag caatcaaaag atgcgtttgt cgaagcaggt tcagcaataa
    16621 aagatgcatt taacaaagat aattatgcac tgactggaac agttgaagca ttcaaacaaa
    16681 tgggcggaga agccgaaaaa acagcaaaga aaactgaaac atccggcaag aaaataaagg
    16741 aaacattaaa gcttgtagaa acaactgcca aacaaactga aacaactgtt tcgaagtcga
    16801 atcaagcaat agatacgatg ctgaacggcg gagttgatca gtatggaaag aaacttagtg
    16861 aaaaaactga gtcattctta aatgcggcta aagaccttta cgaacaatat caagaagcaa
    16921 ctaaaaagtc tcaagataaa tatagcgtag ctatggaaaa ggctcagagt ctcgaaggag
    16981 ataagcgtaa aaaagctata gcagatgcaa ataagacttt agtagacgaa acaacaaaga
    17041 ataatagcac gttactaact ttgcaaagcg attattcaaa tatgctaaaa acaaatcgtt
    17101 gggctgacgg gcaagagtta actgctcaac agaagaagtt tttacaacaa caaactactg
    17161 atattcaaac agagttagcg aaacaaaatc agctgtatgt tgaagcgaac ttattgcgac
    17221 tagaacaagg taaaagctta aatgaaaagg aaagaaatac gagcttagaa gttcaaaaga
    17281 gcttgtatga agaaaagaaa aaagctgttg aaactggcga gaaatcgctt gctgatttga
    17341 aaaagaaaaa agcggacgct tcaactgaaa ctgaaaaagc aaactatcaa attcaaatcg
    17401 acgagcaaac gaagaagaac aagacgctgt ctacaaactt aaaaaactgg gcaactgaaa
    17461 tgaacgcaat aatcgcaaat ggaggcactt taaacgctga aacatttgcg aacggattat
    17521 ctcaacttgg aaatattagt gacgaacagt tgtctgcgtt gtggcaaaat tttgtttcta
    17581 caagcacttc aattgataat acgttgtctg gtttagctgc aatcatgggt caacgcggtg
    17641 gagaaggtgt tcaggcgttt gttacagcac ttcaaagcgg agattataca acagctgcat
    17701 taaatattaa taacgatgtt atgaatactc tttcaacttt gccaaatggc atgttccaaa
    17761 acgggcaaag tggcaaggac caatttatca ctgcgattaa atcaggggat tttcaaggag
    17821 ctggcaaatt tttacttgat ggagtgaagt taggagcatc tcctctacca ggtgagatga
    17881 acaatatcgg taaacaaggc ggaaatgcaa acgcggacgg cttaaagagt acagccgaag
    17941 caaataaaag cgctggtgcc gaactcaaaa acaatgcaaa aaatggcgct tttgacccaa
    18001 atttattcaa aatgacaggg tcaaataatg catccggttt taatagtggt attttggacg
    18061 gaaaaggtaa tgcattttcg gcaggcactg gcattggcaa ttctgctaaa tctggtgctg
    18121 gttccgttga ttccagcgga gttggttctg attttgcatc tggatatgtg aatggtattt
    18181 tgagcggtat gggcgctgtt ggagaagcgg cggggtcttt agctaataaa gcgcttcaag
    18241 cggtaaaaga tgcgcaaaaa tctaaatcac cttccaaaaa agcaaaaaaa ctaggtggag
    18301 acttcggctc tggttactca ttaggtattg ccagcaagac gaaagcagtt aataaagccg
    18361 caagtaatct cgttgctggg gcgcttggaa ctgaatcgca aatcaaaaaa ctatccagta
    18421 cgttgaaaga caaaatatcc tcagcgattg acgcgggatt gcattctaag aataagagtc
    18481 gtggtcaact caaacaagct aaagcattga atagcattga aggttacatt gttcaacaaa
    18541 caaatagatt agctgcaaca gctaagaaac gtgataaagt cgtcgctcaa ttaaaagccg
    18601 ctaatactaa aatggcggac ttgacgaaac aaagtaaaga gtatgcggct tcaatcacgg
    18661 aaaaaatgca aagctatgga tctattagca acgtagacgc agaaaacccg cagtcaatac
    18721 aagcggaaat gcagaaacgc ttaaaagaaa tcaaagcttt tcaagcgaat gtggaaaaat
    18781 tgcgcaaaaa aggcgttagt aaagacatta taagcgacat cttagaatcg ggagtagaaa
    18841 atggttcatc gtatgcgcaa gctcttgcta aatctgatgc taagactatc aaagcgatta
    18901 atagcactca gaatcaaatc aattcagcgt ctaagtcaat gggtaacaca gcggctaatg
    18961 cgatgtatag cgctggtatt aacgcggcga aaggtctaat aaacggactt aacagtcaga
    19021 agaaacaact agaaaacaca gctaagagca tcgctaatac aatcactaat tcggtgaaaa
    19081 aggcgcttag aattcattca ccttcgcgcg tggccatcga gcttgggaaa ttctttactg
    19141 atggacttgg aaatggtgta ttagctggcg ctaaaggtgc ggtgcaatca actaacaaaa
    19201 tggttgataa agtagtaaac gctgcttcta atttgaccgt tccagctata actttgccga
    19261 agatttccgc agaaaaagcg ctgggcctaa aaagtgttga tctaaacaga actattacag
    19321 ttaagacgat tattgataat aagacaaaag agtctagcaa tgcagattta atcaaggcaa
    19381 ttaaagagtc cggggctaaa ccagtcattc taaatttaga tggcgaagta ttagctaaca
    19441 actctaataa tcgaattggc agcatgacag acttaggact atacggaggt ggcttacttt
    19501 gaacaaaaaa acagatttat atttaatgca agcgaataaa attatcaagt taaacgaaaa
    19561 acataacttt gaaataagtg aagtaagtcg cgctagtcct caaattatca ataattatac
    19621 tagctatgag tttagcgacg gcaatcgttc gagtgatagt aatttcgata gcttcgatat
    19681 tgaatttact tgcagattca aaacaaatgg caatatcgac tatcacgttc gacttgatga
    19741 attattcgag gatattttta ttagaaaaga atactacatt ttccatacga aaaccccggg
    19801 aaaaaaatat tgcgttcatc cagcaccttt cgatattgat aggaaaggtg ctgggcatgc
    19861 gcagtttacg ttaagatttg aagttttcaa aggttttagc gaatcgttag gcactagcct
    19921 ttcgcctttt gctttcagcg agggcatttg gcaagcggga caaggcattg tatcacaaaa
    19981 ttataagtat aagcacacat caaacagatt tattgtgtat aacgcgggga gctttgatat
    20041 tgaccctaga atgcacgatt taagaattac tattaagaat tgtcgaagtg acggcttact
    20101 aacaattaac aataaaagca ctggtgaaaa attcgtattc aatgagaaaa tctacgctta
    20161 tgacacaatc gaactggacg gcagtaacat cttgaaaaac ggagtgcgtt gcgggcggaa
    20221 aactaatctc ggtcttattt cgttattatc cggcggaaat gaaatcgaaa tcgagaatgt
    20281 aagcaatatc gaaacaacgt gggattttcc gtttttatat aaatgatggt gggtgagaat
    20341 atggacatat ttgtaagtga ctatgaaaag caatacaaag agattttaac aggctttgac
    20401 cctactacat tttcagaaac gtgggtcgaa aatcagcaat ggcaactaga tttttatgta
    20461 gagaaaacaa gaaataatca agatgttttc gacttattaa atcatgaaag ctctgtttat
    20521 ctggatggcc aagaatttgt tgttaagcag ctaaaacgcg gcgcagttgg gaaaatagtt
    20581 tattcagaag tcacagcaac gcatatttat ttcacgatgc aagatgacta tcagtacaac
    20641 gctatttcgg gttctaagag tgcaaaagat tgtttgacac atattttcgc agctgataaa
    20701 caaggtttta gctttgaact cattgacaaa aacaaggttt tagaaaatat tacacaagaa
    20761 aattttggga atggcaattt actaaagcta gttcaagaag tgttggaaga ttataagctt
    20821 gttatgctag cagacaataa acgattaaca tttattccct ctgaagatta cggagagcat
    20881 acagaaaacg aaattcgcta caataagcac acaaacgaag tcgattttga tattgatacg
    20941 ttatccttaa gaactcaaat taagggctat ggaaaagtcg acagcaacgg aaataactac
    21001 tttccgccag ttacttttac cagcccggaa tcggctaaat ggggcgtgcg aattcaagaa
    21061 ccgttatcag acgagcgtta tacaacttct agcagcatgc taagacgttt gaagcttgaa
    21121 ctacaagact atccagcgac gactggaaat atctctttaa agcttaaata cgaatgcgga
    21181 aaaggcgatt atgtaatgtt tgtttatgaa ccgctgggcc ttttatacga agttcaaata
    21241 gtcgcttata agaaatacat ttttacaaac aaaccgccag aattgacgtt atctaataac
    21301 aaaaaaacaa tggtttctat catggttcaa ctagcaaaag caattaagag aggagcgaaa
    21361 tagatggatt taaaaaaatg gcaagaccca ctcatgaact cagaactaca gcaaaactat
    21421 aacgataatt tagtaaaact agctggaagc cttgaaaaag ctaatcaaga tatgacacat
    21481 gttaatcagc gcatatctaa cttagttatt aaatccggcg ggaatgaatc gaacgaagta
    21541 gtagacgcac gcgtttcttc tctggttcca gaaactgaat tcacaacatt aaacgataga
    21601 ataaattacg cggaaaatgc tttaataaca ggtgtcggaa agctttcaac gaatgttttt
    21661 gatctaatgg ataaatacaa cgatatagat actattttaa agcgtttata tggcttagat
    21721 agcagcaata ttgaaatatt tgtggatgat gcaagaggcg atgatattgc aggaactggt
    21781 gaaattgatg caccttttaa aacgataaat aaagcagtaa tgactttgcc ccgtgtattg
    21841 aatagtaact ctgtgaatat ctggattgtt cctggtcggt ataatgaaga tgtcgttatt
    21901 ccgccaatca tgggagggga tatctacatt aggtctacaa actttgaaac agtagaccct
    21961 accagtagca ccggatgcca agttcgaagt atttctgcga caggaagtaa cggctattta
    22021 tatattgctg gtttagaaga aacgaacacg gcaggcacaa cgaaaaacta cttcattaaa
    22081 gcgacgcgat gcggatttgt aaggattaca aaatgccgaa tggccttcaa tactaaggca
    22141 atagacccgt tcactgcggt ttttattgat gcttgttctg ctgatgtcaa cggctgttat
    22201 tttgcctcac aaaatgttga tgttcgcggt tataacactg ctagagtcga ggttcagaat
    22261 atcgtccatg gcgcaaaaag tgcgattggt ttgtatcctc aaagcgccga tattttcaat
    22321 ctcaatagcg ggacttggga agctgatacg cctacgaaac tgagtggcgg gggagtggtt
    22381 agaacatgac tgaaaacgtt attcataaaa atggtgtata tgattttaac gtcacaacgc
    22441 aagaagataa accacttcaa aaatctgttt tttatacgca agattctggc ggaacagcta
    22501 gacttatttt taatatagat aaagataatc aagatttagt attatcgtct gctgctgaat
    22561 tagagcttgc aatgatttta gcgaaaggaa cagagtcaga gagtaagtat cttgtgaaac
    22621 caactattat tgatggtgtt aggggaattg cagaatactc acttacagac tctcaaatag
    22681 cacacgctgg caatgctatt gctgaattgt atataaaata caaaaacagt caagcgatgc
    22741 gggtatataa attcagtttt gagataaaaa aagcattaat agatagcgac tttttcccag
    22801 tatcagaatt ttatgtggag cgctgggatg attacgaaaa aatattcgat gaatcgttcg
    22861 agagattaaa cactaaatta gatgacgttg ataaaaaagc agatgattta aaaacacaat
    22921 ttgatgatat gcagccatcg caattcgcac aaaaaacaga cttaaatgca catgtaaata
    22981 atgcggatat tcatgtcacc gcagcagata aaacgaactg gaattcaaaa gaaacagcat
    23041 ctagcgcaca ggctaaagca gataaagcac ttgctgatgc aaaaactttt ttcgaactag
    23101 ctagtgcggt gcaaagcgtt actttgacgc caaaaaacgg atttgttgca agtcagcctt
    23161 tagtcgctcg atacattaag tttggcaacc ggtttctagt tattgttagc ggaattgtag
    23221 gaaaagggac cgggaacggg acaggtatat gtgcaacatt
//
LOCUS       DASEAA010000030        21403 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.030, whole genome shotgun sequence.
ACCESSION   DASEAA010000030 DASEAA010000000
VERSION     DASEAA010000030.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 21403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21403
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.030"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..2142
                     /locus_tag="U0342_000972"
     CDS             <1..2142
                     /locus_tag="U0342_000972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM2422327.1"
                     /translation="PATIQLYMNINGKRVEMPLCASCYAEVRNQANFGANEFPGASGS
                     PFDDIFRQLSGAASQANREQRSQAQVQTQTAGGGNGLLDEFGTNLTDMAKNEQLDPVI
                     GRDKEIKRVIEILNRRNKNNPVLIGEPGVGKTAVVEGLANAIVAGEVPSKLMNKEVIL
                     LDVASLVSGTGIRGQFEERMKQLIKELQERKNTILFIDEVHTIVGAGSAEGSMDAGNI
                     LKPALARGDLQMIGATTLKEYRTIEKDAALERRFQPVTVSEPSTKETLTILNGLKPKY
                     EDFHEVVYSPEALTAAVELSARYIQDRHLPDKAIDLMDEVGSKYNLSIEKLDENTVSE
                     RVARLEDEKNQALQMEDYEKAAKVRDEITRLEENKTNNSFSERPVIQASDIQAIIEEK
                     TGIPVGRLQEDEQSKMKNLESNLTGKVIGQEDAVRKVAKAIRRSRVGLKSKNRPIGSF
                     LFVGPTGVGKTELGRTLARELFGTSEAMIRLDMSEFMEKHSVSKLIGSPPGYVGHEEA
                     GQLTEKVRRNPYSIILLDEIEKAHPDVQHMFLQILEDGRLTDSQGRTVSFKDTVIIMT
                     SNAGATDTEASVGFNTTTESKLEKGSDILAKLGAYFKPEFLNRLDSVIEFKSLEKDDL
                     VQIIDLMLVDLNEMLAQEDVTIDVSKEVKEHLIDLGYDPKFGARPLRRTIQEHLEDAI
                     ADSLIEQPEAKHLVATLNENKEITITEQVTV"
     gene            complement(2158..2637)
                     /locus_tag="U0342_000973"
     CDS             complement(2158..2637)
                     /locus_tag="U0342_000973"
                     /EC_number="2.1.1.63"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM2422328.1"
                     /translation="MLKQQKSSPVGDLFITIDEKWIRNISYDEPKNWELLEGTIIEKE
                     LFQALTIQLDDYFEGKREHFDLPVLLKGTDFQQKVWQALSEIPYGVVVSYKDIAISAG
                     SPKAVQAVGQANRANPIPIIIPCHRCVKSNGELGGYNGADVDKKQYLLALEKGLSLS"
     gene            2823..3854
                     /locus_tag="U0342_000974"
     CDS             2823..3854
                     /locus_tag="U0342_000974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM2422329.1"
                     /translation="MEQTALKRESYFDNAKFILIFLVVFGHFLQTFIADYAGVRVLYI
                     YIYTFHMPAFVLISGFFAKSFGKPGYLKKTMKKLILPYVFFQLIYSIFYYFLLSKDNL
                     SIQFLDPEWSLWFLLSLFFWNIMLFIFAKIKPWKSICIALFVGLVAGYFDIIGGYLSL
                     SRTLVFFPFFLVGYFLKKEHFYYLKTHFVMILGGIFIVLLLSFITFHPNLNDKWFLGS
                     KPYANFVEVKSLGLFIRALVYLISFGSIAAFFSFIPRKRLFFTKWGKNTLYVYLLHGF
                     FIKFFREGSQTDFQYSPSTFLLLFVVTFVLTVLLSSRLVKIFVQPVIELRVSMLRDVF
                     SRLTKRESY"
     gene            3884..4252
                     /locus_tag="U0342_000975"
     CDS             3884..4252
                     /locus_tag="U0342_000975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2422330.1"
                     /translation="MGSRKPEIIIGLIGSIIGILVGFWIINYGDSVTDYIQTFTYLPG
                     ELGNELANLGWITLIASVVALIASLLIKSAPRGWGVILVIIGIVLFFVIGTAWIISGI
                     LITLTGLMGIFRRPVPKSKY"
     gene            complement(4332..5657)
                     /locus_tag="U0342_000976"
     CDS             complement(4332..5657)
                     /locus_tag="U0342_000976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkH family potassium uptake protein"
                     /protein_id="HEM2422331.1"
                     /translation="MTPVQVIIAYYFIAVTISTIVLSLPFTLQKGVKVSFIDTLFTAA
                     SSVSVTGLATVDVSQTYSTAGIWVLMAIFQIGGLGVMMISTFFYLILKRRIGLKQRQL
                     IMTDTNQFTMSGMVRMLREILVLIFGIELIGALILGIYFIPLYPNFWDAMFQGLYNSV
                     SLVTNAGVDITGKSLMPFANDYFVQFISILLIIAGAIGFPVLLETRRFLFEKNTLIPF
                     RFSLFVKVTTLTYFVLLIVGGLLIWLFEYHHFFSGKSWDFGFFNSMFLSATSRSAGLQ
                     TIDSGALSISTLLLVSFLMFIGASPSSVGGGIRTTTFAITILFIYSVIRGRKHVYIFG
                     RELHQEDVRKSLAVTLVAGFLSISAIVVLMQTETASLIAVIFEVFSAFGTTGLSVGLT
                     PDLSTPGKIIIIALMFIGRVGIMYSMLSLRNKNQPKNAIRLPKEKIITG"
     gene            complement(5710..6477)
                     /locus_tag="U0342_000977"
     CDS             complement(5710..6477)
                     /locus_tag="U0342_000977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464517.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEM2422332.1"
                     /translation="MDVSIWGEYALVFLVLVVLEGILSADNAVVMAVIVKGLPHDKQR
                     KALFYGLVGAFVFRFIALFLISFLVKIWEIQAIGAVYLLYLAIKHMWRLKKGKQEEVK
                     EASEAKSTSFWGVVARVELTDIAFALDSMLAAAALVVTLPDLGNFDIGGMNGGQFIVM
                     FLGGIAGLVVIRFAATQVVKLLERYPTLETAAFLIVGWVGVKMAVLTLAHPSVAIIPE
                     DFPDSAVWKLTFWSVMIIIGLGGYIIARKKEKKTKRV"
     gene            complement(6580..7347)
                     /locus_tag="U0342_000978"
     CDS             complement(6580..7347)
                     /locus_tag="U0342_000978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464516.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TerC family protein"
                     /protein_id="HEM2422333.1"
                     /translation="MDTAMILEYGWVLLVLIGLEGILAADNAVVMAVMVKHLPDKQQK
                     KALFYGLMGAFVFRFGALFLISFLANVWQVQALGAAYLLYIAISHIWKHAKGKDGEKE
                     KKEKAGSGFWMTVLKVEIADIAFAIDSMLAAVALAITLPETGWGHIGGIDTGQFAIMF
                     LGGLVGLIIIRFAATQFVKLLKSYPSLETAAFLIVGWVGVKLVIYTLAHPSLGVIPHS
                     FPESTLWKLIFWGVMILIIIWGWFVSYRSKKKAETTK"
     gene            complement(7629..8990)
                     /locus_tag="U0342_000979"
     CDS             complement(7629..8990)
                     /locus_tag="U0342_000979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464515.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2422334.1"
                     /translation="MKHSDNYYLTKASIPKAIAHLSIPMMLGMSVGVIYNLINAFFIG
                     LLHDTSMLTAVTLGLPMFTVLMAIGNMFGVGGGTYISRLLGKEEGIKAKQVSAFVLYG
                     SLVLGIICAIILGFLINPVTHFLGADATSFLHTKNYTLALLICSPFIIANFALEQVVR
                     SEGASRVSMNGMIIATVVNLVFDPLLILYFDFNVVGAAVSVGLASLFSLIYYAWYLEK
                     KSEYLSIRFKWFKATKEIVQNVFKIGVSELLLSLFLIVTTLVLNHYSMIYGEGVVAGF
                     GVALRVVQLPEFICMGLYMGIIPLLAYNYGSGNIARFEKAIRATAISIGLIVLLLSSL
                     VFLFRFQVMHLFSDSQSVITLGVHIMVAMLISSLFSGFTGLFTSTFQAIGKAIPATIM
                     SVSQGIIFIPVIILGQHYFGLMGVIWSLTATEILTCIIGVTLFTIHNVKIASSAKTKD
                     LAV"
     gene            complement(9043..9468)
                     /locus_tag="U0342_000980"
     CDS             complement(9043..9468)
                     /locus_tag="U0342_000980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2422335.1"
                     /translation="MRREKTMDTLIRSIMIKSKRKMDAKVAQFGLTTQQARVLGFLND
                     NAANEIIQKDLQRIFQTRGASITSLIQGLEKKELISRKPSIRDGREKVVTLTEEGKRI
                     VDEFNESFPREDDKAKKILSADEYKIFIDLLSKIDDNTE"
     gene            complement(9576..11144)
                     /locus_tag="U0342_000981"
     CDS             complement(9576..11144)
                     /locus_tag="U0342_000981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464513.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 3"
                     /protein_id="HEM2422336.1"
                     /translation="MSQDLQKEVASRKTFAIISHPDAGKTTITEQLLLFGGVIRSAGT
                     VKGKKSGKFATSDWMEIEKQRGISVTSSVMQFDYNGSRINILDTPGHSDFSEDTYRTL
                     MAVDSAVMVIDAAKGIEAQTLKLFKVCRMRGIPIFTFINKMDRQGKMPLELLAELEEV
                     LGIESYPMNWPIGMGKELAGLYDRYHRVIEQYRSEEDERFLPLGEDGDLKEAHAIQKS
                     LYYDQALEEIMLLDEAGNDFSRERIIAGEQTPVFFGSALTNFGVETFLRTFVDFAPSP
                     SSHESNEGVIEADNPKFSGFIFKIQANMNPAHRDRIAFIRICSGEFERGMNVTLTRTG
                     KSMKLANSTQFMADDRETVNRAVAGDIIGLYDTGNYQIGDTITNGSKKLEFEKLPQFT
                     PELFMRVYAKNVMKQKHFHKGVEQLVQEGAIQLFKTWRTEEYIIGAVGQLQFEVFEHR
                     MRGEYNSEIRMEPIGKKIARWVKEEDADEKLSTARSMLVKDRFDQPLFLFENEFAINW
                     FNDKNPDIELTSLL"
     gene            complement(11226..12080)
                     /locus_tag="U0342_000982"
     CDS             complement(11226..12080)
                     /locus_tag="U0342_000982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464512.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422337.1"
                     /translation="MISRNLKIYFRDRTAVFMSLLTVLIIIGLYAIFLGNNMEEMFKQ
                     ASGKTIGIQELVNTWVIAGILSITPVTVSLAVFSLKVHDEELSIARSFAITPASRWRI
                     VISYIVSGLVASFLLSVVTLFVGEMYIWLTGGAFLPFESWIRLIGVILINVFCCSSMM
                     FFIASLVKKASAFSSVSTIVGTVIGFIAGIYLPIGSLPATVQTAMKCFPFTYGASTIR
                     EIMTKEPLQQVFAGNTQAMDATKEMIGITIYWSDKTVTTGLSLLILSAFAVVFGVLSV
                     ILMKRQTK"
     gene            complement(12073..12984)
                     /locus_tag="U0342_000983"
     CDS             complement(12073..12984)
                     /locus_tag="U0342_000983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464511.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2422338.1"
                     /translation="MIKLINVVKKFGKIEAVKGINLEVEKGSLFAFLGENGAGKSTTL
                     SMICTESEPTSGEIFIDDEKLTFKNRKLFRQKLGVVFQENVLDDLLTVRENLYNRASL
                     YGKTKAEITERLALVSSIMGIEDILNRRFEKLSGGQKRRAEIARAIMHDPEILLLDEP
                     TTGLDPKTRVSVWKIIDYLREELGMTVFLTTHYLEEAKDADQLAVIHKGKIIAQGTPA
                     NIRSRFSVDKIFFYDAKVAELQKIMKKMNLPFKVTNRTMRVDVIDENVEILAILNQAI
                     GFYDSFEVIKGNLDDAFISMIKEDSND"
     gene            complement(12981..13409)
                     /locus_tag="U0342_000984"
     CDS             complement(12981..13409)
                     /locus_tag="U0342_000984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464510.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3021 family protein"
                     /protein_id="HEM2422339.1"
                     /translation="MSTKLIQFIQSACLIFSASIITMICSYIATGESETVAIRDIFIM
                     LGFSIVTTFIQQLLFNNSVKTKRAFYSRLFAFFLFIGAAILGLGWLLDWYHNIAGFMI
                     ILGFICVTFLVMHIFFSFRDVKFSNEINQKLAEMRERETK"
     gene            complement(13406..13861)
                     /locus_tag="U0342_000985"
     CDS             complement(13406..13861)
                     /locus_tag="U0342_000985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464509.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LytTR family transcriptional regulator
                     DNA-binding domain-containing protein"
                     /protein_id="HEM2422340.1"
                     /translation="MKFHVKQNNNLAVGEVDVYCHPDNLEEVTNMVIGIEESAEKISV
                     KKDGATYLLEPKAILYFEAVESKIFVYTEKEIYEIHWKLYELEEKFKESSFFRCSKSM
                     ILNIEWIEKIAPGFNGKFEAKLLNREKVIISRQYAKVLKQKLNMGGKRK"
     gene            complement(13994..14473)
                     /locus_tag="U0342_000986"
     CDS             complement(13994..14473)
                     /locus_tag="U0342_000986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464508.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione peroxidase"
                     /protein_id="HEM2422341.1"
                     /translation="MNVHDFSEKAMNGKEIALSDYKGKVLLIVNTASKCGLTPQLEGL
                     EAMYKKLGGANFEILGFPCNQFLRQDPGSDEEILEFCQMNYGVTFQMFSKIKVKGKDA
                     SPLYKYLTEQTGGKKVEWNFAKFLIDENGEVVERFPSKMKPADFEDKVEALVAKVNN"
     gene            complement(14486..15538)
                     /locus_tag="U0342_000987"
     CDS             complement(14486..15538)
                     /locus_tag="U0342_000987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464507.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM2422342.1"
                     /translation="MSYEPNTKETMQKIKELTSIPSPTGNTGKIIEKLAKDLDASKIP
                     YHLNNKGGLIVTLPGKDDTKHRMLTAHVDTLGAMVKEIKADGRLLLTLIGGYRFNAIE
                     GEYCTIETSDGDLYSGTILMHQTSVHVYKDAGTAERNDKNMEVRLDVKALDADKVRAL
                     GIEVGDFVSFDPRVQIINDEYIKSRHLDDKASVAILLQLINHIHENKLELPHTTHFLI
                     SNNEEIGYGGNSNIPSETVEYLAVDMGALGDGQTSDEYTVSICAKDGSGPYHLGLRKH
                     LVELAKSNNIDYKVDIYPFYASDASAAINAGNDIVHGLIGPGIDASHAYERTHRDSLY
                     HTEKLVYAYLFSNILK"
     gene            15679..17154
                     /locus_tag="U0342_000988"
     CDS             15679..17154
                     /locus_tag="U0342_000988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2422343.1"
                     /translation="MEQTKVKAVTIAVFVATFMAAIEGTIVSTAMPTIVSQLDGIELM
                     NWIFSVYLLTSAVTVPIYGKLSDLYGRKNIFVIATIIFIIGSSLCGFAQNMEQLIIFR
                     AIQGIGAGGILPSTMTIIADVYPFEKRAKVLGFMGSAWGIAGVFGPLVGGFLVDQLSW
                     HWIFFINVPIGILTILLILLYLREKVEHVKLPIDYLGASLFTVALLGLLFALQRAGES
                     LNWIEPLVVILFAVSIVLFIAFYFVEKRAKDPIMPFVLFKNPVVLIGNLIGFLISAFL
                     IGINVYIPMWAQGMLGHGATIAGFMLAPLSVTWIIGSFIGGKLLMTLGNRHTVGIGVL
                     ITAASGLILALFPASTNDIFFYLNSAFMGFGFGIIFTTTTVTVQDAVPRFQTGIATAS
                     NTLFRTVGQTIGVAVFGTIFNSVLTSEFRDAAGSEVNRSNLNQLISPQTSGNVSADLV
                     DPLRDILYSGLHMVFWVMFACCIVSYFIHFILPKKHISGEK"
     gene            complement(17188..17940)
                     /gene="lieB"
                     /locus_tag="U0342_000989"
     CDS             complement(17188..17940)
                     /gene="lieB"
                     /locus_tag="U0342_000989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464505.1"
                     /note="ABC transporter involved in aurantimycin A
                     resistance; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux ABC transporter permease LieB"
                     /protein_id="HEM2422344.1"
                     /translation="MKAIRDTSILFGRSMRHIMRSPDTIITVAIIPIMIMLMFVYVLG
                     GAIQTGTDNYVDYLLPGIILMAIASGIAYTAVRLFTDVQKGLFQRFHSMPISRSSVLW
                     GHVLTSLVSNVISIVLIILVALLIGFRSSAGIVEWLSVAGILLLFTLALTWVAVIPGL
                     TAKSVDGASAFSYPLIFLPFISSAFVPTDTMPTAVRVFAENQPVTSIVNTIRGLLYSE
                     PIGNDIWIALAWCVGITVVAYVFAITIYKKMV"
     gene            complement(17937..18701)
                     /gene="lieA"
                     /locus_tag="U0342_000990"
     CDS             complement(17937..18701)
                     /gene="lieA"
                     /locus_tag="U0342_000990"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464504.1"
                     /note="ABC transporter involved in aurantimycin A
                     resistance; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux ABC transporter ATP-binding
                     protein LieA"
                     /protein_id="HEM2422345.1"
                     /translation="MKEVMIKATGLEKSFKKTEVLKGVDFEVKHGEIFALLGSNGAGK
                     TTTIQILATLLKADNGLATVSSFDVKTEPEKVRKHISLTGQFAAVDGLLTGRENILLI
                     AKLRGEKNPAQTADDLLARFGLEKAADRRADTYSGGMTRRLDIAMSLVGSPDVIFLDE
                     PTTGLDPEGRMEVWKTIKTLSDGGTTILLTTQYLDEAEQLADRIAILHGGTIIANGTL
                     DELKKLFPPAEVEYIEKQPSLEEIFLAIINGKEEVK"
     gene            complement(18899..19918)
                     /locus_tag="U0342_000991"
     CDS             complement(18899..19918)
                     /locus_tag="U0342_000991"
                     /EC_number="2.6.1.42"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="branched-chain amino acid aminotransferase"
                     /protein_id="HEM2422346.1"
                     /translation="MSKDIDWSNLGFSYIKTDKRYISYWKDGEWDEGTLTEDNTLHIS
                     EGSTALHYGQQCFEGLKAYRCKDGSINLFRPDRNAARIQKSCERLLMPHIPTEKFIDA
                     VMQVVRANEEFVPPYGTGATLYLRPFVIGVGDNIGVHAAPEYIFSVFCSPVGPYFKGG
                     MAPTNFIVSDFDRAAPNGTGAAKVGGNYAASLLPGQAAKERNFGDCIYLDPATHTKIE
                     EVGSANFFGITKDDKFVTPYSPSILPSITKYSLLYLAEHRLGLEALEGDVYIDKLDEF
                     KEAGACGTAAVITPIGGIQTKDDFHVFHSETEVGPVTKRLFDELCGIQFGDVEAPEGW
                     IYKVK"
     gene            20137..20886
                     /locus_tag="U0342_000992"
     CDS             20137..20886
                     /locus_tag="U0342_000992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM2422347.1"
                     /translation="MTAHKMLDEKFYSKSLGEELDLIICLPPDFSPLYKYPLFIVQDG
                     KDYFQFGKLARHSEELALNEQIQKAIFIGIPYKTVMDRREKYHPDGKQNDAYIRFLAF
                     ELVPYLEERFPSFQMPTSRFLMGDSLGASVSLKAALLFPFTFGNVILHSPYVDDTILT
                     LAEKVDPSKVKIFHIIGDRETAVETSGNEVLDFLSPNKSLEQILTTRGFDYYFHVFNG
                     DHRWKYWQPFIKDSLQFMLPVNTFDLESMRA"
     gene            20904..21332
                     /locus_tag="U0342_000993"
     CDS             20904..21332
                     /locus_tag="U0342_000993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422348.1"
                     /translation="MTVKKVTDDIGKQAALKIRNDVFVVEQHVDPALEWDEFDEIDSV
                     VMFVDYAEDGTPLATGRFREKDGYGKVERICTQKIARGTGSGRRIMEAIESEAKSRGL
                     TTLKLGAQVTAIPFYEKLGYETCSGLFLDAGIEHKEMKKH"
BASE COUNT         6752 a         4439 c         3578 g         6634 t
ORIGIN      
        1 ccagcaacaa tccaactata tatgaatatt aatggcaagc gtgtagaaat gccgctttgt
       61 gcctcttgtt atgcagaagt tagaaatcaa gcaaactttg gggcgaatga gttcccagga
      121 gcaagcggtt ccccgtttga tgatattttc cgtcaattga gtggtgctgc tagtcaagca
      181 aaccgtgaac aaagaagcca agcacaagta caaacacaaa ctgctggtgg cggcaatggt
      241 ttactagatg aatttggaac aaacttaaca gatatggcga aaaatgagca actcgaccct
      301 gtcatcggtc gtgacaaaga aattaaacgc gtcattgaaa tattaaaccg ccgtaataaa
      361 aataatccag tcttaattgg tgaaccaggt gttggtaaaa cagctgtcgt cgaaggactt
      421 gcaaatgcga ttgtcgcagg agaagttcca agcaaattaa tgaacaaaga agttatctta
      481 ttagatgtcg cttcacttgt ttctggaaca gggatacgcg gtcaatttga agaacgcatg
      541 aaacaactga ttaaagaact acaagaacgt aaaaacacga ttctctttat tgatgaagtg
      601 catacgattg ttggggcagg ttccgcagaa ggctcgatgg atgcaggaaa cattctaaaa
      661 ccagctctag ctcgtggcga tttacaaatg attggtgcta ctacactaaa agaataccgc
      721 acaatcgaaa aagatgccgc acttgagcgc cgtttccaac cagtaactgt aagcgaacca
      781 tccacaaaag aaacgctaac tattttaaat ggtttaaaac caaaatatga agatttccat
      841 gaagtagttt attcaccaga agcactaaca gcagcagttg aattaagcgc tcgttatatc
      901 caagatcgtc atttgccaga taaagcaatt gatttaatgg atgaagttgg ctcgaaatat
      961 aatctatcca ttgaaaaact ggacgaaaat acggtgagcg aacgtgttgc ccgtttagaa
     1021 gatgaaaaaa atcaagctct tcaaatggaa gactacgaaa aggcagccaa agttcgtgat
     1081 gaaattactc gcttagaaga aaataaaaca aataactcct tctcagagcg tccagtcatc
     1141 caagcatccg acatccaagc aattattgaa gaaaaaacag gtattccagt aggacgctta
     1201 caagaagacg agcaatctaa aatgaagaac ttagaaagta acttaactgg aaaagtcatt
     1261 ggtcaagaag atgctgtaag aaaagtagct aaagcaattc gtcgtagccg tgttggcctc
     1321 aaatcaaaaa atcgcccaat tggttccttc ctatttgttg gaccaactgg tgtcggaaaa
     1381 acagaacttg gacgcacgct agctcgtgaa ttgtttggta ctagtgaagc gatgattcgt
     1441 ttagacatga gtgaattcat ggaaaaacac agcgtctcta aattaatcgg ttcccctcct
     1501 ggctatgttg gtcacgaaga agctggacaa ttaacagaaa aagttcgtcg caatccgtat
     1561 agcatcattt tgttagacga aatcgaaaaa gcacatccag acgttcaaca tatgttcctg
     1621 caaattttag aagacggtcg actaactgat tcacaaggac gtacagtgag ctttaaagat
     1681 acagtcatca ttatgacaag taacgctggc gcaactgaca cagaagcttc ggtcggcttt
     1741 aatacaacaa ccgaatcaaa acttgaaaaa ggttctgaca tcttagcaaa attaggcgca
     1801 tacttcaaac cagaattctt aaaccgtcta gacagcgtca ttgaatttaa atccctagaa
     1861 aaagacgatt tagtacaaat catcgactta atgctcgttg atttaaatga aatgctcgct
     1921 caagaagatg tgacaatcga tgtttctaaa gaagtaaaag aacatttgat tgaccttggt
     1981 tatgacccta aattcggagc acgtccacta cgccggacta tccaagaaca cctagaagat
     2041 gcgattgccg acagtctaat tgaacaacca gaagcaaaac atcttgttgc aacccttaac
     2101 gaaaataaag aaattactat aacagaacaa gtaacagtgt aataaaaaag gcttgagtta
     2161 acttaaactc aagccttttt ctaatgcaag taaatattgt ttcttatcta catccgcccc
     2221 gttatagccc ccaagttctc cattactttt cacgcatctg tgacatggga tgataatcgg
     2281 aattgggtta gcgcgattcg cttgtcctac tgcttgcaca gctttagggc tacctgctga
     2341 aatcgcaatg tctttataac tcacaacaac cccatacgga atttcactca atgcttgcca
     2401 aaccttttgt tgaaaatcgg ttcctttaag gagcaccggc aaatcaaaat gctctctctt
     2461 gccttcaaaa tagtcatcta gttggatagt taatgcttga aaaagttctt tttctattat
     2521 agttccttct agaagttccc aattttttgg ctcgtcatac gaaatattcc taatccactt
     2581 ttcatctata gttataaata aatcacccac tggcgatgat ttttgttgtt ttagcattct
     2641 gtcgctcctc tccccttaag ttattatttt aaagatagca cttccctctt ccattcgcaa
     2701 ctagctgtca tgccctgtta atatttgata ctttttgtta cttaactgtt ggataagcgt
     2761 tacagaattc agggtaaaat aaacaatagt ttgtcaacat agaatagaaa ggactgtttt
     2821 ttatggaaca aaccgcctta aagcgggaaa gttatttcga caatgccaag tttattctaa
     2881 tttttctagt tgttttcgga cattttctcc aaacatttat cgcggattat gcgggtgttc
     2941 gtgtgcttta tatttatatc tacacgtttc acatgcctgc tttcgtgcta atatccggat
     3001 ttttcgctaa aagttttggt aagcccggtt atttaaaaaa gacgatgaaa aagctcattt
     3061 taccttatgt gttttttcag ctaatatata gtatttttta ttattttctt ttaagtaaag
     3121 acaatctttc tatccaattc cttgatcctg aatggtcact ttggttttta ctaagtttgt
     3181 ttttctggaa tataatgtta tttatttttg caaaaataaa gccttggaag tcgatttgca
     3241 ttgctctctt cgttggattg gttgctggct attttgatat tattgggggg tatttgagtt
     3301 tatctcgaac acttgttttt ttcccgtttt tcttagttgg ctatttttta aagaaagaac
     3361 atttttatta ccttaaaacg cattttgtca tgattctcgg gggcattttc attgttttac
     3421 ttctatcatt tattacattt caccctaact taaatgataa atggttttta ggttctaagc
     3481 cttatgcaaa ctttgtggaa gtaaagtcgt taggtctatt cattcgcgca cttgtctact
     3541 tgattagttt tggttcgatt gcggcttttt tcagttttat tcctagaaag aggttatttt
     3601 tcactaaatg gggtaaaaat acgttatatg tttatttgtt gcatggcttc tttattaagt
     3661 tttttcgtga aggtagtcaa actgactttc aatatagccc atcaacattt ttacttctat
     3721 tcgtcgttac ttttgtttta acggtattat tatcaagtcg attggtaaaa atattcgttc
     3781 aaccggtaat cgaacttagg gtatctatgc tgcgagatgt gtttagccgc ttaacaaaac
     3841 gggaaagtta ttaaacgtat agatagaaaa aggaggttgt attatgggtt caagaaaacc
     3901 agaaattatt atcggattaa ttggctctat cattgggatt ctagttggct tttggattat
     3961 taattatgga gattcagtca cagattatat acaaacattt acttatttac ctggtgaatt
     4021 aggtaacgag ttagcaaatc tagggtggat tacattaatc gcatctgtag ttgcattaat
     4081 tgcttccctt ctaatcaaat cagctccacg tggttggggt gttatcttag taattatcgg
     4141 tatcgtgctc ttcttcgtta tcggaactgc ttggattatc tccggaatct taatcacttt
     4201 aactggttta atgggtattt tcagacgccc cgttccaaaa tcaaaatatt aaaaatcacc
     4261 tcttggtcat tttgatcaag aggttttttc atggacaaaa aagccattct gcaatcagaa
     4321 tggcttttat attaacctgt aataattttc tcttttggta aacgaatcgc atttttaggt
     4381 tgatttttat ttcttaaact cagcattgag tacataatac caacgcgccc aataaacatt
     4441 aatgcaataa taataatttt acccggcgta gataaatctg gtgtcaaacc tacagaaagc
     4501 cctgtagtac caaacgccga aaagacttca aaaatgacgg caattaacga ggcggtctct
     4561 gtttgcatta aaacgactat ggccgatata ctcaaaaacc ctgctactaa cgtcaccgca
     4621 agcgatttcc gcacatcctc ttgatgaagc tcacgaccaa aaatgtacac atgtttccga
     4681 cctcggataa ccgaataaat gaataaaatc gtaattgcaa aagttgtcgt tcgaatccca
     4741 ccaccaacag aacttggcga tgctccaata aacattaaga aggaaacgag caacaacgta
     4801 gagattgaca acgccccact atcaatcgtt tgtaagcctg cgcttcgtga tgttgcagat
     4861 aagaacattg aattaaagaa accgaaatcc caacttttcc cactaaagaa atgatgatat
     4921 tcaaacagcc aaataagtaa accacccaca attaaaagca caaaataagt tagcgtcgtt
     4981 actttcacga aaagggaaaa gcgaaacgga attaacgtat ttttttcaaa taaaaatcta
     5041 cgtgtttcaa gcaatacagg aaaacctatc gcacctgcaa taatcaacaa aatcgaaata
     5101 aattgaacga aataatcatt ggcaaagggc attagcgatt taccggtgat atcaaccccc
     5161 gcattggtta cgagtgaaac agaattatat aatccttgga acatcgcgtc ccaaaaattc
     5221 ggatacagcg gaataaagta aatccctaaa atcaaggctc caattaactc aataccgaaa
     5281 ataagcacta gaatctcacg aagcatccgg accatcccgc tcattgtaaa ttggttagta
     5341 tccgtcataa ttaattgacg ttgttttaag ccaatccgtc tttttaaaat caaatagaaa
     5401 aacgtactaa tcatcataac accaagtcca ccaatttgga aaatcgccat taagacccaa
     5461 attccagcag tactataagt ctggctaacg tctactgttg caagcccggt aacactaacc
     5521 gaactcgctg ctgtaaatag agtatcaata aacgacacct tgaccccttt ttgtagagtg
     5581 aacggtaagc ttaagacgat ggtagaaatc gtaaccgcaa taaaataata cgcgataatt
     5641 acttgaactg gtgtcatacg tgctaacacc agttttaatc ttctgcgcaa ttttacttcc
     5701 tgatcatatt caaactcttt tggttttctt ctcttttttt ctcgcaatga tataaccacc
     5761 caaacctatt attatcataa ccgaccagaa tgtcagcttc caaaccgctg aatccggaaa
     5821 atcttctgga ataattgcta cagaaggatg tgctagcgtt agaaccgcca ttttcacacc
     5881 aacccaacca acaattaaaa acgctgctgt ttcaagtgta gggtaacgct ctaataattt
     5941 aaccacttgt gtggctgcaa aacgaattac gacaagtcct gcgataccac caaggaacat
     6001 cacgataaat tgcccaccgt tcattccccc aatatcaaaa ttccctaaat ctggcaaagt
     6061 aactactaat gctgctgcag ctaacatgga atccagtgca aaagcaatat ctgtcaattc
     6121 cacacgagct actacacccc aaaaggaagt tgatttggct tctgatgctt ctttgacttc
     6181 ttcttgttta ccttttttaa ggcgccacat gtgcttaatt gctaagtaca ataaataaac
     6241 cgcgccgata gcttgtattt cccaaatttt tactaaaaat gaaattaaaa atagtgcaat
     6301 aaaacgaaaa acaaaggcac ctactaaccc ataaaacaag gcttttcgtt gtttatcgtg
     6361 cggtaaacct ttaacaatta ctgccataac tacggcatta tctgcggaaa gaattccttc
     6421 aagtactact aaaacaagga aaactaacgc atattcgccc caaatagaaa catccattcc
     6481 tcattcacca tccttctact ctatcataaa attgtgtttt cagcatctgg ttgtatgtaa
     6541 aaccagaagt acaaatatgc acttctggtc tattaaaaat tatttagttg tttctgcttt
     6601 tttcttacta cgataggaaa cgaaccatcc ccatataata ataagaatca tcacacccca
     6661 gaaaattaat ttccacagtg ttgactcagg gaagctgtgt ggaattaccc caagacttgg
     6721 atgagctagt gtataaataa caagcttcac gcctacccaa ccaacaatta aaaatgcggc
     6781 tgtttcgaga ctcggataac tttttagtaa tttaacaaat tgtgttgctg caaaacgaat
     6841 aataatgagg ccgacaagtc cacctaagaa cataatcgca aattgcccgg tatcaattcc
     6901 tccaatgtgt ccccatcctg tttctggaag agtaatggca agtgctactg ccgcaagcat
     6961 ggaatcaatc gcaaacgcaa tatcggcaat ctctactttt agaactgtca tccaaaaacc
     7021 agagccagct ttttccttct tctctttttc tccgtctttt ccttttgcat gtttccaaat
     7081 gtgactaata gcgatatata gtaaatatgc ggcaccaagc gcttgaactt gccaaacatt
     7141 tgccaaaaag gaaattaaga ataatgcgcc aaaacggaaa acaaaggcac ccatcaatcc
     7201 gtaaaataac gcttttttct gttgtttatc tgggagatgt ttgaccatca cagccataac
     7261 cactgcatta tctgctgcta aaatcccctc aagaccgatt aggacaagta acacccaacc
     7321 gtactctaaa atcattgctg tatccactaa ttcttttcct cctttgttct attaaaatgt
     7381 caaagatctc ctattttgaa gaaacaaaaa agcgagacct gcccgtaaag gcaaaggtct
     7441 cgctaacatt taaaattaaa tgtgataaaa ccgatgatat ctctatcatg taatgacgac
     7501 tttatcctga ttaaaaagct aatcagcgct actcccctct gacatttgtc aaagaacgat
     7561 atatgattac ctagagaata ataccataat atagaacttc tcgtcaacta atttttctca
     7621 caaacttttt aaacggctaa gtctttcgtt tttgcgctac tagctatttt gacattgtgg
     7681 attgtgaata gtgtcacacc aatgatacat gtcagaattt cagtcgctgt taaggaccaa
     7741 atcacaccca taagtccgaa ataatgttgt cctaaaatga tgactgggat aaaaatgatg
     7801 ccttgtgaaa cagacataat cgtagccgga atcgctttcc caatcgcttg aaaagtactc
     7861 gtaaacagcc ccgtaaatcc actgaaaaga gaagatatca acatcgcaac cataatatgc
     7921 acaccaagcg ttatcacact ttgactgtca ctaaatagat gcatcacttg gaaacggaag
     7981 aggaatacca gactcgaaag taagagcaca ataagcccga tactaattgc agtagcccgt
     8041 attgcttttt caaaccgcgc aatattaccc gaaccgtaat tataagctaa cagcggaatt
     8101 atccccatgt aaagtcccat acaaataaat tcagggagct gcaccacccg aagcgccacg
     8161 ccaaaacctg caactactcc ttccccgtaa atcatcgaat aatgatttaa aacgagtgtt
     8221 gtcacaatga ggaataacga taaaagcaac tctgaaacac caattttaaa cacattttga
     8281 acgatttctt ttgttgcttt aaaccattta aaacgaatcg ataaatactc acttttcttc
     8341 tctaaatacc aagcatagta aatcagcgaa aataaacttg ctaatcctac cgaaactgcg
     8401 gcccccacca cattaaaatc aaaatacaaa ataagcaatg gatcaaatac taaattaaca
     8461 actgtagcaa ttatcattcc gttcatagaa acccgcgaag ctccctcaga ccgaaccacc
     8521 tgttctaaag caaaattcgc aataataaac gggctacaaa ttaaaagcgc caacgtataa
     8581 tttttcgtgt gtaaaaagct cgttgcatct gccccaagaa aatgagtaac tggattaatc
     8641 aaaaagccaa gtatgatggc gcagataatt cctaatacta aacttccata taaaacaaag
     8701 gcggatactt gttttgcctt tattccctct tctttcccaa gcaagcgcga aatatacgtt
     8761 ccaccaccta ctccaaacat attaccaatc gccatcaaaa cggtgaacat cggtaatcca
     8821 agtgtcaccg cggttaacat cgacgtatca tgcaacaagc ctataaagaa cgcattgata
     8881 aggttatata tgacccctac agacattcca agcatcatcg gaatagataa atgtgctatc
     8941 gctttaggaa tgctcgcttt tgttaaataa taattatctg agtgtttcat tttggttccc
     9001 cctcaaaatt agttagaact ctaactatat agttaaattt ttttattccg tattgtcatc
     9061 aattttacta agtagatcaa taaagatttt atactcgtca gcggaaagga tttttttcgc
     9121 tttatcatct tcacgcggga aggattcatt aaattcgtcc actattcgtt taccttcttc
     9181 agttaaagtg accacttttt ctctgccgtc tcgaatgctt ggtttacgag aaattaattc
     9241 ttttttctcg agtccttgaa tgaggctagt aatacttgcg ccacgcgttt ggaagattcg
     9301 ctgaagatct ttttggataa tttcatttgc cgcattatca tttaaaaacc ctagaactct
     9361 agcttgttga gttgtcagcc caaattgagc tacttttgcg tccattttcc gtttggattt
     9421 aatcataatc gaacgaatta acgtatccat cgttttctct cttctcacga gtattcctcc
     9481 ttattaatta gaattctaac taattatagc gcatttcaaa aaattgtcaa gcaaaaaaac
     9541 aacctatttg cgaaagtaca aataggttgc agctattata gtaatgaagt taattcgata
     9601 tctggatttt tatcattaaa ccaattaatt gcgaattcat tttcaaataa gaataacggt
     9661 tggtcgaagc ggtcttttac gagcatactt cgagcggtgg atagtttttc atccgcatct
     9721 tcttctttga cccaacgagc gatttttttg ccgattggtt ccatccgaat ttctgaatta
     9781 tattcgccac gcattctgtg ttcgaatact tcaaattgca actgaccaac agccccaata
     9841 atgtattctt ccgtgcgcca cgttttaaat aattgaatcg caccttcttg aacaagttgc
     9901 tcgacgcctt tatggaaatg cttttgtttc ataacatttt tcgcataaac acgcataaat
     9961 aattctgggg taaactgcgg aagtttttca aattcaagtt ttttacttcc attagtaatc
    10021 gtatcgccaa tttggtaatt tcccgtgtcg tacaaaccga taatatcacc agctaccgca
    10081 cgattaacag tttcccggtc atccgccata aactgcgttg agttagcaag cttcatactt
    10141 ttgcccgttc gcgttaacgt aacattcatg ccgcgttcaa attcgcctga acaaattcga
    10201 ataaaggcaa tccggtcccg gtgagcagga ttcatattcg cttggatttt gaaaataaag
    10261 ccagaaaact tcggattatc agcttcaatc acgccctcat tcgattcatg acttgaagga
    10321 gatggcgcaa aatcaacaaa tgtacgtaag aaagtttcta caccaaaatt agttaaggca
    10381 cttccaaaga atactggtgt ttgttcaccg gcaataatac gttcccggct aaaatcattt
    10441 ccagcctcat caagtaacat aatttcttcc aatgcttgat cataataaag tgatttttga
    10501 atagcatgtg cttctttcaa atcaccatct tcaccaagtg gcaagaaacg ctcatcttcc
    10561 tctgaacgat attgttcaat cacacgatga tagcggtcat aaagcccagc aagctctttc
    10621 cccataccaa ttggccagtt cattggatac gattcaatgc caagaacttc ttctaattca
    10681 gcaagtaatt caagcggcat tttcccttga cggtccattt tattaataaa agtaaaaatt
    10741 ggaatcccgc gcatccgaca aactttgaaa agttttagcg tttgggcttc aatccctttc
    10801 gcagcatcga taaccataac tgcactatcc actgccatca atgtccggta cgtatcctca
    10861 ctgaaatccg agtgacccgg tgtatccaaa atattaattc ttgaaccatt ataatcaaac
    10921 tgcatcacag aactcgttac cgagatacca cgttgttttt caatttccat ccagtcactt
    10981 gtcgcaaact tgccagattt ctttcccttt acagtcccag ctgaacgaat aacgccaccg
    11041 aataataata attgttccgt aatcgtcgtt ttcccagcat ccgggtgaga aataatcgca
    11101 aacgttttgc gtgaagcaac ttctttttgc aaatcttgac tcattgttat tttcctccta
    11161 gattcattca cattccatta gtatagcata actaggagaa tttcggctga ttttttattc
    11221 aaaaattatt ttgtttgtcg tttcatgagg atcacagata atacaccaaa cacgactgca
    11281 aaggcactta aaataagtaa actaagccct gttgtaactg ttttatcgct ccaataaatc
    11341 gtaattccaa tcatttcttt tgttgcatcc atcgcctgag tattacctgc aaaaacttgt
    11401 tgtaatggct ctttcgtcat gatttctcga atggtagaag ctccgtatgt gaaaggaaaa
    11461 catttcatcg cagtttgcac cgtagccgga agtgaaccaa tgggtaaata aatccctgca
    11521 ataaaaccaa taacagtccc aacaatcgtc gaaacggagc taaaggcact cgcttttttt
    11581 accaaactgg cgataaagaa catcatacta ctacaacaga aaacattaat taaaataacc
    11641 ccaattaaac gaatccagct ctcaaaaggt aaaaatgctc cgccagtcaa ccaaatatac
    11701 atttctccaa caaaaagtgt tacaacagac aacaagaagg aagcaactag tccactaaca
    11761 atataactaa taacaatacg ccatctggaa gctggtgtta tcgcaaagct tctcgcaata
    11821 cttaattctt catcatgtac tttcaaagaa aaaacagcta acgatactgt cacaggtgta
    11881 atggataaaa tccccgcaat cacccaagta ttcactaatt cttgaatccc tatcgttttt
    11941 ccagaagcct gtttgaacat ctcttccata ttatttccta aaaaaatcgc atacagccca
    12001 ataataatta aaacagttag taatgacata aatacagctg ttctatcacg aaaataaatt
    12061 tttaaattac gactaatcat tggagtcctc cttaatcatc gaaataaaag cgtcatctaa
    12121 gttcccttta atcacctcaa aagagtcgta aaatcctata gcctgattta aaatagccaa
    12181 tatttcgaca ttttcatcta tgacatctac acgcatcgtt ctgttagtca ctttaaatgg
    12241 taaattcatt tttttcatta ttttttgaag ttctgcaact tttgcatcgt aaaagaaaat
    12301 tttgtctaca gaaaaacgac ttctaatgtt tgctggtgtc ccttgcgcga tgattttccc
    12361 cttatggatt acagccaact gatccgcatc tttggcttct tctaaataat gtgtcgttaa
    12421 aaacaccgtc attcctaatt cttctcgcaa ataatcaata attttccata cactcactct
    12481 agtttttggg tccagtccgg tcgttggctc atctagcagc aaaatttctg ggtcatgcat
    12541 aattgcccta gcaatttccg cgcgacgttt ttgaccacca gacaattttt caaaacgccg
    12601 atttaaaata tcctcaatgc ccataataga agaaactagc gctaatcgtt ccgtaatttc
    12661 tgcttttgtt ttcccatata aactagcacg attatataaa ttttcgcgca ccgtgagtaa
    12721 gtcatccaac acattttctt ggaaaacaac gcctagtttt tgtctaaata atttacggtt
    12781 tttaaatgtc aatttttcat catcaatgaa aatttctccc gaagttggtt cgctttctgt
    12841 gcaaatcatg ctaagcgtag tcgatttacc cgcaccattt tcgcctagaa aagcaaataa
    12901 cgagcctttt tcaacttcta aattaatacc tttgacagcc tcgattttgc caaatttttt
    12961 aactacattg atcaatttta tcattttgtc tccctttctc gcatttctgc tagtttttga
    13021 ttaatttcat tactgaattt cacatcacgg aagctgaaga aaatatgcat tacaaggaaa
    13081 gtcacacaaa taaagcccaa aataatcata aacccagcta tgttatgata ccaatccagc
    13141 aaccaaccaa gccctaaaat tgctgcgcca ataaagagga agaaagcaaa caaacgactg
    13201 taaaaagcac gtttcgtttt cactgagtta ttaaataata attgctgtat gaatgttgtc
    13261 acaatactaa aacctagcat aataaaaata tcccggattg cgaccgtttc tgattctcca
    13321 gttgcgatgt aagagcagat catcgtgata atagaggcag aaaaaataag gcatgctgat
    13381 tgtataaatt gaattagttt tgtactcatt tccgcttacc tcccatgttt aatttttgct
    13441 ttaaaacctt cgcgtactgc cgagaaataa ttactttttc tcgatttaaa agtttcgctt
    13501 caaatttacc gttgaagcca ggggcaatct tttcaatcca ttcaatattt aagatcattg
    13561 atttcgaaca tctgaaaaaa gaactctcct tgaatttttc ttccagttca tataatttcc
    13621 aatggatttc ataaatttct ttttccgtat aaacaaaaat cttactttcg actgcctcaa
    13681 aatataaaat ggcttttggt tctagtaaat aagtggctcc atcctttttg actgagattt
    13741 tttcagctga ctcttctatt cctattacca tgttcgttac ttcttctaaa ttatcgggat
    13801 ggcaatacac atccacttca ccaactgcta aattattatt ttgcttcaca tggaatttca
    13861 tctggttgcc tcccttttta ttttattata aacgccatgt caaaaactac aagctgattt
    13921 cagtaacatg catttttaac taactaagat gcaaaaaact cggtagtact ataatagcac
    13981 taccgagttt tccttaatta tttactttcg caacaagtgc ttccacttta tcctcaaaat
    14041 ctgctggttt cattttagat gggaaacgtt caacaacttc tccattttca tcaattaaga
    14101 atttcgcaaa gttccattct acttttttac cacccgtttg ttcggttaaa tatttataaa
    14161 gtgggctggc atctttgcct tttactttaa ttttggaaaa catttggaaa gtcacaccat
    14221 aattcatttg gcaaaattct aaaatttcct catcactgcc aggatcttgt cgcaaaaact
    14281 ggttacacgg gaaaccgagg atttcaaaat tagcgccacc caatttttta tacattgctt
    14341 cgagaccttc taattggggt gttaagccac atttactcgc agtattcacg atgagtaata
    14401 ccttaccttt ataatcactt aaagctattt ctttgccatt cattgctttt tcagaaaaat
    14461 catggacatt catatgggat tcctcctatt tcaatatatt tgaaaataaa tatgcataaa
    14521 ctaatttttc tgtatggtaa agtgaatcgc ggtgtgtgcg ttcatatgca tggctagcat
    14581 caatacctgg tccaatcaaa ccatggacaa tatcattacc agcattaatt gccgcactcg
    14641 catcagatgc ataaaacgga taaatatcca ctttataatc aatattattg cttttagcaa
    14701 gctccactaa atgtttgcgc aaaccaaggt gatacgggcc actaccatct tttgcacaaa
    14761 tagaaacagt gtattcatca gacgtttgtc cgtcaccaag tgctcccatg tcgacagcta
    14821 aatattccac cgtttcagac ggaatgttag aattaccacc atagccaatt tcttcattat
    14881 tagagatgag gaaatgggtt gtatgaggaa gctccagttt attttcgtga atatgattga
    14941 ttagttgtaa taaaatcgcg acacttgctt tatcatccaa atggcgagat ttgatatatt
    15001 catcattaat aatttgcacg cgcggatcaa acgaaacaaa atcccctact tctattccaa
    15061 gcgcacgaac tttgtctgca tctaatgctt ttacatctaa gcgaacttcc atatttttgt
    15121 cattacgctc agcagtccca gcatctttat agacatggac agaagtttga tgcattaaaa
    15181 tggtgccact atacaaatct ccatcacttg tctcaatggt acaatattcg ccttcaatcg
    15241 cgttaaaacg gtagcctcca attaaggtta aaagtaatcg tccgtctgct ttaatttctt
    15301 tgaccattgc acccagcgta tccacatggg cggttagcat acggtgtttc gtgtcgtctt
    15361 tcccaggaag cgttacgatt aatccacctt tgttgtttaa atggtaaggg atttttgaag
    15421 catctaaatc ttttgccagt ttttcgatga ttttccctgt attgccagtt gggcttggga
    15481 tagatgttaa ttctttaatt ttttgcattg tttcttttgt atttggttcg tatgacaaaa
    15541 aaattcctcc tttagttcgc tttcttctat tatattatag cgcttatctt gaatatgcgc
    15601 atttcttagg attaactttt ttcccaattt agtcctttta tatgctataa ttcggtagac
    15661 gaaaagggag ggaatttttt ggaacaaaca aaagtaaaag ccgttaccat cgccgtattt
    15721 gtcgcaacat ttatggcagc tattgaaggt accatcgtga gtactgcgat gccaacgatt
    15781 gtaagtcagt tggacggcat agagttaatg aactggattt tttctgttta tttgctaaca
    15841 tcagcagtga cggttccgat ttacggaaaa ctgtctgatt tgtatggacg aaaaaatatt
    15901 tttgtgattg cgacaattat ttttattatt ggttcatcac tttgtggatt tgcacaaaat
    15961 atggaacaat taattatttt tcgcgcgatc caaggtattg gagcaggtgg gattttacca
    16021 tctactatga cgattatcgc agacgtgtat ccatttgaaa aacgagcaaa agtacttggc
    16081 ttcatgggtt ccgcttgggg tatcgctggc gtatttggac cacttgttgg agggttttta
    16141 gtagatcaac tttcatggca ttggattttc tttatcaatg tccctatcgg cattttaaca
    16201 atcctactta ttttgcttta tttacgcgaa aaagtggagc atgtcaaact accaattgac
    16261 tatttaggtg cctcgctctt tacggttgct ctgcttggat tattatttgc gttacagcga
    16321 gccggggaat cactcaactg gatagaaccg ctcgtcgtta ttctttttgc cgtttcgatt
    16381 gtgttattta ttgcttttta ttttgtcgaa aaacgtgcaa aagatccgat tatgccattt
    16441 gtattattta aaaacccagt ggtgttaatt gggaacttaa ttggtttctt gattagtgcc
    16501 ttcctaattg gaattaacgt gtatattcca atgtgggcac aaggaatgct tgggcacggg
    16561 gctacgattg ctggatttat gcttgcaccg ctttcagtta catggataat tggttcattt
    16621 atcggcggca aacttttaat gacgcttgga aatcggcata cggttggcat tggcgtttta
    16681 attactgctg caagtggatt aattttagcc ttattccccg cttccacaaa tgatatcttc
    16741 ttctatttaa atagtgcatt tatgggattt ggttttggga taatctttac aacaacaact
    16801 gttaccgttc aagatgcagt accgcgattc caaactggta ttgctacagc ttctaacaca
    16861 ctgtttagaa cagttggtca aacaatcggg gtcgctgtct ttggaactat ctttaactca
    16921 gttcttacaa gcgaattccg cgacgcagct ggcagtgaag taaatcgtag taatctaaac
    16981 caactaatta gcccgcaaac ttctggtaac gttagtgcag acctagttga tccgcttcga
    17041 gatattttat atagcgggct tcatatggtt ttctgggtta tgtttgcttg ctgtatcgtt
    17101 agttatttta ttcattttat cttaccgaaa aaacatattt ccggtgaaaa ataaaaagtt
    17161 tggctccgcg gagccaaact ttttatttta taccattttt ttataaatag ttatcgcaaa
    17221 aacatacgca acaacggtaa ttccgacaca ccaagcaagc gcaatccaaa tatcattccc
    17281 gattggttct gaatacagca atccacgtat cgtattaaca attgaggtca cgggctgatt
    17341 ttctgcaaaa acacgaactg cagttggcat cgtatctgtt ggaacaaaag ctgaactaat
    17401 gaatggtaaa aatatgagcg gataagaaaa tgcgcttgct ccatctactg atttggcagt
    17461 taaaccagga atcacagcaa cccatgtgag cgctaatgtg aataatagca aaataccggc
    17521 tacagaaagc cattccacta ttcctgccga tgaacgaaaa ccaataagaa gagcaactaa
    17581 aataatgagc acaatagaga taacattaga aactaaagaa gttaaaacat gaccccataa
    17641 taccgaagaa cgactaattg gcatagaatg aaatcgttga aataatcctt tttgtacatc
    17701 tgtaaataat cgtaccgccg tataagcaat cccacttgcg attgccatca aaataattcc
    17761 cggcaacaaa taatctacgt aattgtctgt ccccgtttga attgcgcctc caagcacata
    17821 cacaaacatc aacataatca taattggaat aatggcaact gtaataatcg tatcaggact
    17881 acgcataata tgacgcatgg agcgaccaaa taatatgctt gtatcacgaa ttgctttcat
    17941 tttacttcct ccttcccatt aataattgct aagaaaattt cttctagtga tggttgtttt
    18001 tcgatatatt ctacttcagc tggcgggaat aattttttaa gttcatccaa ggttccattt
    18061 gcaataatgg ttccaccgtg aaggatagcg attctatccg caagctgctc tgcttcatct
    18121 aaatattgcg ttgttagtaa tatagttgtt cctccatcag aaagtgtttt aatcgttttc
    18181 cagacttcca ttcgcccttc cggatcaagt ccagttgttg gctcatcaag aaaaatcaca
    18241 tctggggagc caacgagact catcgcaata tccagtcgtc ttgtcattcc acctgaataa
    18301 gtgtctgcac gccgatccgc agctttttca agtccaaaac gtgccaataa gtcatctgcc
    18361 gtttgtgctg gattcttttc accacgtaac ttagcaatga gtaaaatatt ttctcgtcct
    18421 gttaaaagtc catctactgc cgcaaattgt ccggtaagac taatatgttt ccgtactttt
    18481 tccggctccg ttttcacatc aaaactagaa actgtagcaa gtccattatc cgcttttaaa
    18541 agagtcgcta aaatttggat ggttgtcgtc ttgcccgcac cgtttgagcc tagtaatgca
    18601 aaaatttcgc catgttttac ttcaaaatcc acacctttca agacttctgt tttcttaaat
    18661 gacttttcca aacccgtggc tttaatcatc acttctttca tttgaataca accttctttc
    18721 cattttttat taaaactcca ctactcagta atacaggtat tctgtatcac ttattactac
    18781 tacatagtaa caccgagttg ctatcatgtc aataaaaaag tcattttctt tttattaatc
    18841 agaaatgact tttgattttg tacataaaaa aaccgtccgc tgaacggacg gtttaaaatt
    18901 atttcacttt ataaatccaa ccttctggag cttctacatc tccaaattga atgccacata
    18961 gttcatcgaa taaacgcttc gttactggcc ccacttctgt ttcactatgg aatacatgga
    19021 aatcatcttt ggtttgaata ccaccaattg gtgtaataac cgctgccgtt ccacatgctc
    19081 cagcttcttt aaactcatct aatttatcaa tatatacatc accttctaat gcttctaaac
    19141 ctagacgatg ctctgccaaa taaagtaacg aatacttcgt gatacttggc aaaatagaag
    19201 gagaatacgg cgtaacaaat ttatcatctt ttgtaatacc aaagaaatta gcagaaccaa
    19261 cttcttctat ttttgtatga gtagctggat ctaaataaat acaatcacca aaattgcgtt
    19321 cttttgcagc ctggcctgga agtaaacttg cagcatagtt tccgcctact tttgcggcac
    19381 ccgtaccatt tggagcagca cggtcaaaat cggaaacaat aaagttagtt ggcgccattc
    19441 cacctttgaa gtaagggccg actggtgaac agaaaacaga gaaaatatac tctggggctg
    19501 catgaacacc aatattgtca cctacaccaa taacaaatgg acgtaaataa agtgttgcac
    19561 ctgttccata cggcggtaca aattcttcat tggcacgaac aacttgcata acagcatcaa
    19621 taaatttttc agttgggatg tgaggcatta ataaacgctc acagcttttt tgaatacgag
    19681 cagcattccg atctgggcgg aaaagattaa ttgaaccgtc cttacaacga tatgctttta
    19741 aaccttcaaa acattgttgt ccgtaatgaa gcgctgttga accctcacta atatgtagcg
    19801 tattatcttc tgttagcgta ccttcatccc attccccgtc tttccaataa gaaatgtaac
    19861 gcttatccgt tttaatataa ctaaatccta aattactcca gtcaatatct ttactcattc
    19921 aaaatcccca ctttctatca ttaaaacaga attattgtat gtttcagtat agcatattaa
    19981 atagcattat tgcagtgatg tctcgtgaaa aagaaatttt tttcaaataa ataggcaaaa
    20041 tgttctttct tttaacgtaa ttcatgctaa aatagagtaa cttttcaaaa aacaatcccc
    20101 tatgaaggaa tgatttcaag aaaggagaga atgaaaatga cagctcacaa aatgttagat
    20161 gagaaatttt atagtaaatc gctaggagag gaacttgatt taattatctg cttaccacct
    20221 gatttttctc cactatacaa atatccactt ttcattgtac aagatggtaa agattatttt
    20281 cagtttggca aacttgcgcg tcactccgaa gaattagcgc taaatgagca gattcaaaaa
    20341 gccattttca ttggtatccc atacaaaact gttatggatc gtcgcgaaaa atatcatccg
    20401 gacggtaaac aaaacgatgc atatatcaga tttttagcat ttgaactcgt tccttatctt
    20461 gaagaacgct ttccttcttt ccaaatgcct actagtagat tcctgatggg agattcactc
    20521 ggggcatccg tttctttaaa ggcagctctt ctttttccct ttacatttgg taatgtgatt
    20581 ttacattccc cctatgtgga tgacacaatc cttacacttg cagaaaaagt agacccttca
    20641 aaagtgaaaa tcttccatat tatcggtgac cgagaaactg cagtcgaaac atccggaaat
    20701 gaagtgctcg atttcctatc accaaataaa tctttagagc aaattttaac cactcgcgga
    20761 tttgattatt atttccatgt atttaacggt gatcatcgct ggaaatactg gcagccattt
    20821 atcaaagatt ctttacaatt tatgctacca gtgaatacat ttgatttaga aagcatgcgc
    20881 gcataagaaa ggacggaaac aacttgaccg taaagaaagt aacagatgat attggcaaac
    20941 aagccgcact taaaattaga aatgatgttt ttgtcgttga gcaacatgtt gatccagcat
    21001 tagaatggga tgaattcgat gaaatagatt ctgttgtaat gtttgttgat tatgcagaag
    21061 atggcacacc gcttgcaacc ggtagattcc gcgaaaagga tggttatggt aaagtcgaac
    21121 gcatctgtac ccagaaaata gctcgcggca ctgggagcgg ccggagaatc atggaagcca
    21181 ttgaatccga agctaagtct cgtggcttaa caaccttaaa attaggagcc caagtaactg
    21241 ctattccctt ctatgaaaaa ttgggatacg aaacttgctc gggattgttc cttgatgctg
    21301 gaattgaaca taaagaaatg aaaaaacatt aacataggaa atttaataaa aatagttatt
    21361 tcttttatat agaagaaata actatttttt tattagctct att
//
LOCUS       DASEAA010000031        21348 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.031, whole genome shotgun sequence.
ACCESSION   DASEAA010000031 DASEAA010000000
VERSION     DASEAA010000031.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 21348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21348
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.031"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1065
                     /locus_tag="U0342_000994"
     CDS             <1..1065
                     /locus_tag="U0342_000994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422349.1"
                     /translation="IIISILSATTLSAIGTISSVYYQANTSASTSAPSSFEYEIPKDS
                     ETNNKIIKTAESDPDHPVEFKQKSTYYIVKAEGARPDFVEYDINEGFPVISESDYNSL
                     VKKEGTPEKTANLKENEAQMVLTITYDEDAQKEMIGEKFTLNSPDKPNIKIKSVVQNS
                     PISTIPGLLVLPDSQVAKIAADSSIAAHGVESISVKDAKQAQALDKKMRAVIPKDTNF
                     VSYTKMYQEIITVTGVLLFIGMFIGFVFLAATGSIIYFKQLTEAYNDIGTFDILKKIG
                     LTRRDIRKVLAKQLLVVFLIPLIIGIAHSSFALLGLSHMLALDLTLPVVISTGVYTLM
                     YIVYYFVTLNSYTNIVFGKK"
     gene            complement(1103..1927)
                     /locus_tag="U0342_000995"
     CDS             complement(1103..1927)
                     /locus_tag="U0342_000995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422350.1"
                     /translation="MPSKWRGICGSLLIALGITQLYSFISAVIGYFNAEENSFVFVWN
                     YWMLLFFGVGLFIIGFVFMRKESFRLASIIGVICFVLFQGFSVYYYQLRILSKLEYAQ
                     PFEWSGTLLCILGLLVLIALLIGPKFQAKEIQADQAWKTKWRYAAGVFSLLGAVTSVF
                     AAVTIFRQLHSDNIKEGYLFTTVLDGYFACFMAVIFLLVVIFSWRKVSYLLVGILMGA
                     AFILLTNYLSVTNWIDFAKENLSITFGSNEREVFGMQFLMGASAFLSSIFGYIAKK"
     gene            1988..2449
                     /locus_tag="U0342_000996"
     CDS             1988..2449
                     /locus_tag="U0342_000996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422351.1"
                     /translation="MNWTIWDKSQPVPLTLLLDADPSEKQIATYFNKSHVLQLMQADT
                     IIGVVCLFPLNKNQLEIMNIVVSSEYRNQGIGKKLLEKAFDYATHKHFSKIIVKTGNS
                     SIDQLAFYQKNGFRMQHIIPNYFTENYPNQTIIENGIACLDQIILLKEIKS"
     gene            complement(2484..3836)
                     /locus_tag="U0342_000997"
     CDS             complement(2484..3836)
                     /locus_tag="U0342_000997"
                     /EC_number="5.4.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglucosamine mutase"
                     /protein_id="HEM2422352.1"
                     /translation="MGKYFGTDGVRGVANSELTPELAFRLGRMGGYVLTRHVGEHPRV
                     LVARDTRISGEMLESALIAGLVSVGIEVMRLGVISTPGVAYLTKAQGASASVMISASH
                     NPVDDNGIKFFGSDGFKLSDDQEEEIEQLLDTAEDTLPRPSGEGLGTVSDYFEGKQKY
                     IQYLKQTIENDFNGYHIALDCANGATSGLATHLFADLDADISSMGASPNGLNINDGVG
                     STHPEALATFVLDKKADVGLAFDGDGDRVIAIDEIGQIVDGDKIMFICAKYLREQGLL
                     NNNTIVSTVMSNLGFYKGLKELEIEDVQTAVGDRYVVEAMREGNYNLGGEQSGHIIFL
                     DHNTTGDGLLSGIQLINVMKATGKKLSELAAEMKTFPQKLENIRVSDKNHVTDNPKVS
                     KVIGEVEAEMAGNGRVLVRPSGTEPLVRVMVEAATKEETDEYCERISAVVRSEMALND
                     "
     gene            complement(4086..5444)
                     /locus_tag="U0342_000998"
     CDS             complement(4086..5444)
                     /locus_tag="U0342_000998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbbR-like domain-containing protein"
                     /protein_id="HEM2422353.1"
                     /translation="MDRILNNKWSIRIVALLLAAILFTSVNANNNNATTFSTTSSSDS
                     EVIENVPVKVYYDKTNLYISGIPETVTVTLSGPRSIVQSAKAQQDFTVYADLKNASIG
                     TQEVKLQVKDVSDRLKVKVNPATVNVNVQEKVTKKFSVDVELSKSVVADGYQAGTPII
                     DPKKVSITGAKDTIEQIAYVKATLESDGKHKSEFTDKATVSVFDSNLNKLDVEVNPQE
                     VEVTVPVEKVGKSVPVKIKQEGTPESDIEISSMTPDKSEVVVVGDDAVLEKIKEIEIP
                     IDVSKIKADTVKEVTVPVPTGAKSVQPTTIEVKIKTVKKSEANNNQTTSDSNNQDTDT
                     TDKNTDDSGDNDTKISKSFSNMQVYMSGLKNTFDAQMITPANGKVSVTITGEKKTVDG
                     IAAKDLSVIANLSKSKAGSYSIPLELNGLPDNVAYVINPRQADFIITDKEASIEVPSK
                     ST"
     gene            complement(5444..6265)
                     /gene="dacA"
                     /locus_tag="U0342_000999"
     CDS             complement(5444..6265)
                     /gene="dacA"
                     /locus_tag="U0342_000999"
                     /EC_number="2.7.7.85"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465644.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diadenylate cyclase"
                     /protein_id="HEM2422354.1"
                     /translation="MDFSNMSILHYLANIVDILVVWFVIYKVIMLIRGTKAVQLLKGI
                     FIIIAVKLLSGFFGLQTVEWITDQMLTWGFLAIIIIFQPELRRALETLGRGNIFTRYG
                     SRIEREQHHLIESIEKSTQYMAKRRIGALISVARDTGMDDYIETGIPLNAKISSQLLI
                     NIFIPNTPLHDGAVIIKGNEIASAASYLPLSDSPFLSKELGTRHRAALGISEVTDSIT
                     IVVSEETGGISLTKGGELFRDVSEEELHKILLKELVTVTAKKPSIFSKWKGGKSE"
     gene            complement(6420..7715)
                     /locus_tag="U0342_001000"
     CDS             complement(6420..7715)
                     /locus_tag="U0342_001000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681399.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HEM2422355.1"
                     /translation="MANLKVIENEATILASIPKHNVDYNARVMQSVSVDYERDMIYWT
                     QQYSGKKMTDAGAGESYNITRTDLKGNYIDQMWCLNGGHGTNIALDYNLESKKMHIWS
                     AYKINNKWEVVCYPYESNKILKGTESSIFISKVESGSYNRISGDLKNDMLVFHSGGDP
                     KTFNIRIVRASSVREGKLEVLYKVKATEANDAYVYQGCALDFPYLYTASGTGGVEEPK
                     QLTCVDIVTGKRVYQTTFKFNTKAMQTTESNFAEPENVCVYYKNNQKHIVVGYALGGA
                     GNRMNRAFDLVENNSENIETEIESLRNLIISRKRTEVIFDQSTKGDMTTNFKLRETLN
                     NFDIIQVVLESGGGYTTASRLVSPKLFEASKSFIFASSNIGDTSGNNVDMYEYAANFN
                     DDLTSFKNDRAVKIEVSNNGTVRGNITNMGIKKIYGIVL"
     gene            complement(7844..10105)
                     /locus_tag="U0342_001001"
     CDS             complement(7844..10105)
                     /locus_tag="U0342_001001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HEM2422356.1"
                     /translation="MAQKQLFEIEPWTLRTTKLDKENKRLQESLTSLGNGYMGMRGNF
                     EEGYSGDGHIGTYYAGVWFPDKTRVGWWKNGYPDYFGKVINGLNFIGIEVRLDGEKLD
                     LFVDEVSDFELVLDMEKGVLRRQFTVVKNNKTFRISAERFLSVATKELAVIRYQVEAK
                     SAAKVDLTSFLDGNVQNEDANYEEMFWQEVEKASSASRGSLVTKTIPNNFGTPRFTVS
                     AVMENTTNTANQTNQTKALYAENHFQFDLKENEVAQIEKRVVITTSRDYEEREILPAG
                     EKILQSLEAKTYDELLAAHVAGWRERWDKADVEIAGDDSAQQGIRFNIFQLFATYYGE
                     DARLNIGPKGFTGEKYGGATYWDTEAFALPMYLSLTDKSVSHNLLKYRHDQLDGAKIN
                     AQKIGLAGALYPMVTFTGVECHNEWEITFEEIHRNGAIAYAIYNYTNYTGDDSYLKTD
                     GIEVLTEITRFWADRVHLSDRLDKYMIHGVTGPNEYDNNVSNNWYTNYIAAWTIRYTL
                     ENLDAEAKKRLGVTEYEIAKWEDIEHRMYYPFDEKWQIFVQHDTFLDKELRSTDTLKP
                     EDMPINQNWSWDKILRSCFIKQADVLQGLYLFYDDFDFDTKQRNFEFYEPLTVHESSL
                     SPAVHAVLASELGKYDKAVELYKRTARLDLDNINNDTEDGLHITSMAGSWLSIVQGFA
                     GMRVTDGELSFAPFLPDGWENYRFKINFRDRLLEVKVERNSVEITLLAGKAFEINLYG
                     EPQELHSTVNVTK"
     gene            complement(10121..10954)
                     /locus_tag="U0342_001002"
     CDS             complement(10121..10954)
                     /locus_tag="U0342_001002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1189 domain-containing protein"
                     /protein_id="HEM2422357.1"
                     /translation="MKKVPFIIQYVKSTLGPTAIFEGRKVLKFWQMVIVFIFLNALLL
                     LPVSAHFANQSSFDLPSLMPKMAALGTDQLATEVSALTLENGALTDKNAHIVEKTANG
                     VAGVNLTKAELSGAKNVINFKDQEMTLTDSSGYTFEVSYPKDATLSEITSGESLVDWV
                     SAQWYLENQAFVFLSMVLMIGSIIFVSSLMLTVFTTLFIWMTKRSSFSSIASFKESVN
                     LTLNALGIPVIAACIIGFIYFDITIIMAVQSLGMVLMIAWTFLKTRFYKTSEKSMAAS
                     R"
     gene            complement(10982..11833)
                     /locus_tag="U0342_001003"
     CDS             complement(10982..11833)
                     /locus_tag="U0342_001003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465647.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2422358.1"
                     /translation="MRDFMKDQRTTKFLTQFFTYLFLTVLTIIILYPILITASSAFKP
                     GNIAAFTLEWSDSWTLNNFTRLFNETLYLDWYKNTLIIAVVTMIMQVTIVTLAGYTYS
                     RYRFKGRKNSLIFFLIIQMVPTMAALTAFYVLAMLLGALDQYWFLTLIYIGGGIPMNT
                     WLMKGYFDTVPRDLDESAKLDGAGHFRIFAQIILPLVRPMIAVQALWAFMGPFGDFLL
                     AKFLLRTPENLTIAVGLQTFIANPQQQKVALFAAGAILAALPICLLFFFLQKNFVSGL
                     TAGGTKG"
     gene            complement(11834..13141)
                     /locus_tag="U0342_001004"
     CDS             complement(11834..13141)
                     /locus_tag="U0342_001004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2422359.1"
                     /translation="MKLEQKQIKNVRQATLLSIIPGLGQFYNKQNFKGIVFFALFALF
                     IIEFFAVGLNALIGLVTLGSVPGVDHSLFLMIEGTLQLIVTLLFIGFWFINIFDARRV
                     AMQWNLGETVNRSAIAIIKNMLDKGFPYLLTLPAYLVMTFVIIFPVLVTLFMAFTNYD
                     FYHIPPANLIDWVGFKNFFNIFFLSSYRDTFLSVFSWTLIWTICATSLQIVVGVFTAI
                     VANQSFIKGKRLFGVVFLLPWAVPAFITIMSFSNMFNDSIGAINSQVIPLLNHLPFVD
                     INAIAWKTDPFWTKVALISIQGWLGFPYIYVMVTGVLQAIPGELYEAARIDGASAIQR
                     FRKITLPMILFVTAPVFITQYTFNFNNFSIIYLFNEGGPGSVGAGAGSTDILISWIYK
                     LTTGTSPQYAVAAAVTLLISIIVITVSMIAFKKTNAFGNEEMM"
     gene            complement(13229..14488)
                     /locus_tag="U0342_001005"
     CDS             complement(13229..14488)
                     /locus_tag="U0342_001005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM2422360.1"
                     /translation="MKRFKKVGIVSAVLVMALSLAACGGGKDTSKSGSSDEKTLTVSV
                     DAGYKDYVNKIKGDFEKDNDVKVKVVEKDMFETLEALPLDGPAGTAPDVMMSAFDRIG
                     SLGQQGHLAEVKLGNKDDYDEKDQKQVTIDDKIYGAPAIIETLVLYYNKDLLDKAPAT
                     FKDLETLSKDSRFAFTSEKGKNTGFLAKWTDFYFSYGLLAGYGGYVFGDEGTNPKDIG
                     LNNKGSVEGITYATKWFQDVWPKGMQDNKSADDFIQDQFVKGKAAAILGGPWSAANYK
                     EAKINYGVAKIPTLNNGKEYSPFAGGKGWVVSNYSKNKDVAQKWLDYVTNQKNQETLY
                     DMTNEVPANLKARDTAKSKNDELTNAVIEQYKNAQPMPNIPEMSEVWTGAENLMFDAA
                     SGSKTPQQSADDAVKVIEDNVTQKYTK"
     gene            complement(14701..16476)
                     /locus_tag="U0342_001006"
     CDS             complement(14701..16476)
                     /locus_tag="U0342_001006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465650.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glycosidase"
                     /protein_id="HEM2422361.1"
                     /translation="MEKAGIYHQPASSYAYSYDAKTLHIRIRTKRLDISEVTLIAADP
                     YLWKDGKWQSESYTMRKIAETEEHDYWFFAITPEHRRLQYGFLLTDTEGETTFYGGRG
                     FFEPTEANLATMDYYFKFPFIHAVDTFEAPEWVGNTIWYQIFPERFANGNPAISPENA
                     LPWGSKDPNTTDFFGGDIEGIIEHLDYLAELGINGVYLTPVFEAPTNHKYDTVDYKKI
                     DPHFGDKETFRKLVQEAHKRGIRIMLDAVFNHIGDTSAEWQDVVLNEEKSAYRDWFHI
                     HSFPVRQNENGNIEGEPTLSYDTFAFTTHMPKLNTANPEVQKYLLDIATYWIREFDID
                     GWRLDVANEVDHAFWKEFKKAVQAEKEDIYILGEIWHDSWIWLLGDEFHAVMNYPFTQ
                     TIIENFIEEKITPEQMVSGINEQYMRYPNQVNEVMFNMLDSHDTARILTRANNDEDKV
                     KQALAFMFAHTGSPCIYYGTEIGMDGGNDPGCRKCMEWDETKQNQDMLAFTKQLIALR
                     KDNQAIITSGELTWLGASSETGITAFSKELNGEKLHFLFNQAKEDKDFTISFENTATD
                     IWNNRAVTENLVVPAKGFLVVKENS"
     gene            16734..17369
                     /locus_tag="U0342_001007"
     CDS             16734..17369
                     /locus_tag="U0342_001007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465651.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM2422362.1"
                     /translation="MENTLSFKKQGYWLFSSAIIIGVLFLLLPHIISNIGVLEFIGAF
                     FNALCMGVIAFIILKAEFLDWFKHFSFKWILIGAPALIIISSIFNIAWAYFAGSTTEN
                     GINSVLTWSYVFTSIPFMLLGEELLSISLLYAAWKKWNWKFWQASLLCSLLFATWHLT
                     SYDFNFLQCIITLAPARLILNYLFKKTNSIWVTFIVHFIFDFIAFLPILLK"
     gene            complement(17405..18370)
                     /locus_tag="U0342_001008"
     CDS             complement(17405..18370)
                     /locus_tag="U0342_001008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2422363.1"
                     /translation="MATLADVAKRANVSKMTVSRVINHPDQVSDELKMLVYSAMEALE
                     YVPNYAARALVQNRTQVIKFLILEEIDTVEPYYMNLLTGISRELDKYYYSLQLVTQRS
                     RNIGAYDGLIVTGIRDKDYDLGLLDIDKPVIFYGENKRGYDSIDVDNKKGTALATEHM
                     VEIGFSRIVFLGIDLLDEQFMKSRLEGYEEIVKEHGLEPESYFIANSSSVAEEKAFEL
                     LRYNSEKIAIVCASDRIAIGVVRAAAAFGRRFGENIAVTGFDGVFLDRISSPKITTVQ
                     SPVVEMGEELAKMLLAKINDHGKPQGNLLFTPELLIRASTTGKEE"
     gene            complement(18509..18745)
                     /locus_tag="U0342_001009"
     CDS             complement(18509..18745)
                     /locus_tag="U0342_001009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422364.1"
                     /translation="MQEQDIRYYVLPTIIIFILGIAAMNASSFPFISFLTTTLVAIAI
                     GIIIGGAHQLIRLIIKTYQQTKERRVSQKKWQTL"
     gene            complement(19345..21168)
                     /locus_tag="U0342_001010"
     CDS             complement(19345..21168)
                     /locus_tag="U0342_001010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEM2422365.1"
                     /translation="MASPLKRLLIGRPLKTSEAGDQKLGKLKALAVLSSDALSSIAYG
                     TEQILLVLVTVSAAAMWYSLPIALCVLVLLFALNLSYKQIIYSYPHGGGAYIVSRENL
                     GNNAGLIAGGSLLVDYMLTVAVSVSSGTDAIVSAVPSLYPFAVPIAVLLVVGVTIINL
                     RGITESASLLAIPVYLFVFSIIALIFTGLFKVLTGMDASHETAAVGTHVQGVTIFLLL
                     RAFASGSASLTGIEAISNAVPLFKEPRPKNAAKTLTLMAGLLGFFFVGITVLAFVYGT
                     VPELKVTVLSQIAENVFGRNFMFYFIQATTALILVLAANTGFSAFPMLAFNLAKDKFM
                     PRMYLARGDRLGYSNGIITLAVGSILLIILFKGKTELLIPLYSVGVFIPFTLSQTGMI
                     VKWWKQRPKGWKKSLSANLLGASISFTVLLVLFLTRIESVWPVFVFMPIMIYVFHRTR
                     HHYRKVGPQLRIDETMDLPDFKGNAVIICVSDTTKVVEGALQYAKSIGDTVIAVHISI
                     DKKQEKEFVERWNRVHPEVRMANLFSPYRSISDPLMKFIDTAKQKADQDNYSLTVLIP
                     QFIPRKGWQNVLHNQTSLLIRTRLLMKRDVVVSTYPYHLKE"
BASE COUNT         6518 a         4372 c         3444 g         7014 t
ORIGIN      
        1 attattattt ctattttaag tgcaacaacc ctttctgcta tagggacaat aagcagtgtg
       61 tattatcaag caaatacgtc cgcaagcacg tccgctccat ctagctttga atatgaaata
      121 cctaaagata gtgaaacaaa caataaaata attaaaactg cagaaagtga ccctgatcat
      181 ccagtagagt ttaaacaaaa aagcacttac tatatcgtta aagcagaggg agctcgtcca
      241 gactttgtag aatatgatat aaatgagggt tttccagtta tttccgaatc tgattataat
      301 tctctcgtaa aaaaagaagg aacacctgaa aaaacagcta atctcaaaga aaacgaagca
      361 caaatggtac taactattac ttatgacgaa gatgctcaaa aagaaatgat tggtgagaaa
      421 ttcacactta attcgccgga taaaccaaat attaagatta aatctgtcgt tcaaaactca
      481 ccaataagta ctattccagg cttgctcgta cttccagaca gccaagtagc taagatagca
      541 gcagattctt caattgctgc tcacggtgtc gaatccattt cagttaaaga tgcaaaacaa
      601 gcacaagcat tagataagaa gatgcgtgct gttattccaa aagatacgaa tttcgtttct
      661 tatacgaaga tgtaccaaga gattattaca gtcactggtg ttcttctctt tatcggaatg
      721 ttcatcggtt ttgtgttctt agcagcaaca ggaagcatca tctacttcaa acagctaaca
      781 gaagcgtata acgatattgg tacttttgat atcttgaaaa aaattggtct tacacgtaga
      841 gacattcgta aagtccttgc taaacagtta ctagttgtat tcttaattcc gctaatcatt
      901 ggtattgcac atagtagttt tgcacttctc ggactttcac atatgttagc acttgattta
      961 actttgccag ttgttatttc tactggagtt tatacattaa tgtatattgt ttactatttt
     1021 gttaccttaa atagctacac aaatatcgtt ttcggcaaaa aataaaaaaa gaatccctct
     1081 aatcttaatt agagggattc cattattttt tcgcaatata accaaagata ctagatagaa
     1141 aagcagaagc tcccatgagg aactgcatac caaacacttc tcgttcatta ctaccaaatg
     1201 taatagataa attttctttg gcaaaatcaa tccaatttgt cacagataaa taatttgtca
     1261 gtaaaataaa ggctgcaccc attaaaatac caactaaaag atacgaaact ttacgccagg
     1321 aaaagattac cactagaaga aatataacag ccataaagca tgcaaagtaa ccatctaata
     1381 ccgttgtaaa taaataacct tctttaatat tatccgaatg taattgtcta aaaatagtta
     1441 ctgcagcaaa aaccgatgtc actgctccaa ggagtgagaa aacacctgct gcataacgcc
     1501 atttcgtttt ccaagcttga tctgcttgta tttcttttgc ttgaaatttt ggtccaataa
     1561 gtaatgcgat taatactaaa agtcccaaaa tacataataa agttcccgac cattcaaatg
     1621 gctgtgcata ctctaatttt gaaagaattc ggagctgata ataatacacc gaaaaccctt
     1681 ggaataaaac gaaacagata acgccaataa tacttgcaag gcgaaaactt tcttttctca
     1741 taaaaacaaa accaataata aaaagtccta caccaaaaaa taatagcatc caataattcc
     1801 atacaaaaac aaaactattt tcttctgcat taaaataacc aataaccgca ctaataaaac
     1861 tgtatagttg cgtaatacca agagcgatta acaaactacc gcatattcct ctccatttac
     1921 taggcaattc gcccacttcc ttcctattta tgccttgcca tgttacccta agagtgaggt
     1981 gataaaaatg aactggacca tctgggacaa aagccaacca gtcccactca ctcttttgtt
     2041 agatgccgat cctagtgaaa aacaaattgc gacatacttc aacaaatctc acgtgttgca
     2101 attaatgcaa gctgatacaa tcatcggcgt tgtttgttta tttccactaa ataagaacca
     2161 actcgaaata atgaatattg ttgtttcttc agaatacaga aaccaaggta ttggcaaaaa
     2221 attactcgaa aaagcttttg attatgcaac tcataaacac ttttcaaaaa ttatcgttaa
     2281 aactggaaat tctagtattg accaacttgc cttttaccaa aaaaatggtt ttcggatgca
     2341 gcatattatc ccaaattatt ttactgaaaa ttatcctaat caaacaatta tcgaaaacgg
     2401 cattgcttgc ttagatcaaa tcattctatt aaaagaaata aaatcctgat gaagtttatc
     2461 atcaggattt tttgtttgtt gttttaatcg ttaagtgcca tttctgaacg aacaaccgct
     2521 gaaatacgtt cacaatattc gtctgtttct tctttcgtag cagcttctac catcactctt
     2581 actaatggtt ctgtaccgga tgggcgaaca agaactcgac cattaccagc catttcagct
     2641 tctacttcac cgattacttt acttactttc ggattatctg ttacatggtt tttatcactt
     2701 acacggatgt tttctagttt ttgcgggaat gttttcattt cagccgcaag ctcagataat
     2761 tttttcccag ttgctttcat cacgttgatt aattggattc ctgaaagaag tccatcacca
     2821 gttgtattat gatctaagaa aataatatga ccagattgtt ctccgccaag attataatta
     2881 ccttcacgca tagcttctac tacataacgg tcacccactg cagtttgtac atcttcaatc
     2941 tcaagctctt tcaaaccttt atagaagcct agattactca taactgttga tacaattgtg
     3001 ttgttattta ataagccttg ttcacgtaaa tatttcgcgc agataaacat aattttatct
     3061 ccatcgacaa tttgaccaat ttcgtctatt gcaataacac ggtcgccatc gccatcaaaa
     3121 gctaaaccaa catctgcttt tttatctaaa acaaaggtag ctaatgcttc tggatgtgta
     3181 gatccgacgc catcattgat atttaaaccg tttggagacg ctcccatcga actaatatcc
     3241 gcatctaaat ctgcaaataa atgcgttgca agacctgaag ttgcgccatt cgcacaatca
     3301 agtgcaatgt gatatccatt aaagtcattt tcgattgttt gtttcaagta ttgaatatat
     3361 ttttgtttgc cttcaaaata atcgctcact gtcccaagac cttctccact tggtcgaggt
     3421 agcgtatctt ctgctgtatc aagaagctgt tcaatttctt cttcctgatc atctgacaat
     3481 ttaaagccgt cagaaccaaa gaatttaata ccgttatcat ccactggatt atggctggcg
     3541 gagatcatta cactagcaga agcgccttgt gcttttgtta aataagctac acctggtgtg
     3601 gagataactc ctagacgcat tacttcaatc cctacagaaa caagtcctgc gattaaagcg
     3661 gattcaagca tttctccaga tatacgtgta tcacgagcta caagaacacg tggatgttcc
     3721 cctacgtgac gggttaaaac atacccaccc attctaccta atctgaatgc aagttctggt
     3781 gttaattcag agtttgcaac acctctaact ccatccgtac caaaatattt acccatttca
     3841 ttactctcct tctaagtcat tcattatcta aatgattttt gtttgtcatt tcatcattac
     3901 tttgtcaaat gctggttcta tctttgctaa tctcaaccat acatttgtta ttataccttt
     3961 tttaagagaa aatttcatcc ctctacaata aaacgttggt attgcttgct tttccactat
     4021 tctatgtata aaaagttctt tgccaaaaag gaggagtatg agactagcgc cccacactcc
     4081 ttatgttatg tgcttttgga aggtacttca atagatgcct ctttatccgt aataatgaaa
     4141 tcagcttgtc taggattaat aacataggca acattatccg gtaagccatt caattctagt
     4201 ggaatactgt aacttcctgc tttgctttta ctcaaattgg caatcacact caagtctttc
     4261 gccgctattc cgtctactgt tttcttctct ccagttatcg tcacagatac ttttccattg
     4321 gcaggagtta tcatttgtgc atcgaaagta tttttcaatc cactcatgta gacttgcata
     4381 ttagaaaatg acttagaaat ttttgtatcg ttatctcctg aatcatcggt gtttttatcc
     4441 gttgtatctg tgtcttggtt attactatct gaagttgttt gattgttatt tgcttcagac
     4501 ttttttacgg tcttaatctt cacctctatc gtcgtcggtt ggactgattt ggctccagtt
     4561 ggaaccggga cagtcacttc tttgacggta tctgctttga ttttagaaac atcaattgga
     4621 atttcaattt ctttgatttt ttcaaggacc gcatcgtcac caactacaac tacttctgac
     4681 ttatctggtg tcatgctgga aatttcaata tcactttctg gcgtgccttc ttgcttaatt
     4741 ttcactggaa ctgacttgcc gactttttca actggcacgg tcacttccac ttcttgcgga
     4801 tttacttcga catctagctt gttcaaattg ctatcaaaaa cagagacggt agccttatcg
     4861 gtaaattcgg atttatgttt gccatcactt tcgagtgttg cttttacata agcaatttgt
     4921 tcgatagtat cttttgcacc agtaatagag acttttttag gatcaatgat gggcgttcca
     4981 gcttgataac catctgcaac gacagatttg ctcaattcta cgtcaacaga gaattttttc
     5041 gttacttttt cttgtacatt gacgttgact gttgctggat tcacttttac ttttaggcgg
     5101 tcagatacat ctttcacttg tagttttact tcttgggtcc caatggaagc atttttcaaa
     5161 tctgcataaa cggtaaagtc ttgttgagct ttggcagact gaacgatgct acgagggcct
     5221 gaaagcgtga ctgtaacggt ttctggaata cccgaaatat ataaattcgt tttatcataa
     5281 tatactttga ccgggacatt ctcgatgact tctgaatcac tagaagaagt cgttgaaaaa
     5341 gtcgtggcgt tattattatt tgcattaact gatgtaaaaa ggatggctgc gagtagtaag
     5401 gctacaatcc gaatcgacca tttgttattt aaaattcgat ccatcattcg cttttgcctc
     5461 ctttccattt agaaaagata gaaggtttct ttgcagttac tgtgactagt tctttaagaa
     5521 gaattttatg taactcttct tctgacacat cacggaaaag ttctccacct ttagttaggg
     5581 aaattccgcc agtctcttca gaaactacaa tcgtaatact atctgtcact tcactaatcc
     5641 caagtgcagc ccggtgacgc gttccaagtt ctttggataa gaacgggcta tctgaaagtg
     5701 gcaagtaact tgctgccgat gcaatttcgt ttcctttaat aataactgct ccatcatgaa
     5761 gcggtgtatt cggaataaaa atattaatta ataattgaga agaaattttt gcatttaacg
     5821 gaatccctgt ttcaatataa tcgtccatgc ctgtatcgcg cgccactgaa atcagcgccc
     5881 caattcgacg ttttgccata tactgggtag acttttcgat agactcgatt aaatgatgct
     5941 gttcacgctc tattcttgat ccataacgag taaaaatatt gcctcgtcca agcgtttcta
     6001 aagcacggcg taattccggt tggaagataa ttataattgc aaggaatccc caagtaagca
     6061 tctgatccgt aatccattct actgtttgga gaccaaaaaa tccgcttaat agtttgactg
     6121 caatgataat aaaaatgcct tttaataatt gtactgcttt tgtacctcgg attaacatga
     6181 tcactttata aattacaaac catacgacaa gaatatctac aatatttgct agataatgca
     6241 atatcgacat attggaaaaa tccatcactt cacctccgtg cctcttgaaa accatttatg
     6301 atcacatggt tcactttctt tattatagca taagagtgca ggtggaaaaa gcaatcgtcc
     6361 cgccaaaaat tggaaagatt tgttaaagaa atcattcagc gctctttaat tttaatttat
     6421 tacaaaacaa taccatagat ttttttaata cccatattcg taatattacc ccgtactgtt
     6481 ccgttatttg aaacttcgat tttgactgca cgatcattct taaaagatgt taagtcatca
     6541 ttaaaattag cagcgtattc gtacatatct acattatttc cactagtatc accaatatta
     6601 ctcgaagcaa aaataaatga tttagatgcc tcgaatagtt ttggcgatac gagtcgagat
     6661 gcagttgtat accccccacc agattcaagg acaacttgga taatatcaaa attatttaac
     6721 gtttcacgta atttaaaatt tgttgtcata tcccctttag tactttgatc aaaaataact
     6781 tctgtacgtt ttctacttat aataaggttt cttaaacttt caatttctgt ttctatgttt
     6841 tcactattat tttctacaag atcaaatgct ctattcatac gattccctgc tcctcccaaa
     6901 gcatatccta ctacaatatg cttttggtta tttttataat atacacaaac attttccggt
     6961 tctgcaaaat tgctttctgt ggtttgcatt gcttttgtat tgaacttaaa tgttgtttga
     7021 tacacacgtt ttccagttac tatatccacg caagttaatt gttttggttc ttcaacgcca
     7081 ccagtaccag aagctgtata taaatatgga aaatctaacg cacacccttg gtaaacatat
     7141 gcatcatttg cttcagttgc ctttacttta taaagtactt caagctttcc ctctcttaca
     7201 gaggaagcac gcacgattct aatattaaac gttttaggat ctccacctga atgaaaaacc
     7261 aacatatcgt ttttcaaatc tcctgaaatt cggttatagc tgccactctc tacttttgaa
     7321 atgaaaatac tggactcggt tccctttagg attttattac tttcataagg gtaacaaacc
     7381 acttcccatt tattgttaat tttatatgcc gaccaaatat gcattttttt actttctaaa
     7441 ttataatcaa gtgcaatatt tgttccatgc ccaccgttta aacaccacat ttgatcaatg
     7501 taatttcctt tcaaatctgt cctcgtaatg ttatatgact ccccagctcc agcatcagtc
     7561 attttttttc cgctgtactg ttgcgtccag taaatcatat ctcgctcgta gtcaacagaa
     7621 acagattgca ttactctagc attgtaatca acattatgtt taggtataga agctagaata
     7681 gttgcttcat tttctattac tttcaaattt gccattatcc gatccccttt tgatttatta
     7741 tcagctgata aactaagtat aagacaaatt aactttcaaa aagtatcgaa aaagtatcat
     7801 caaaaaactc gcatcaggct atctgatacg agtttttcat ttttcattta gttacattta
     7861 cagttgaatg aagctcctgt ggttctccat ataagttaat ttcaaaagct tttcctgcaa
     7921 gtagtgttat ttccacacta tttctttcta ctttcacttc taacaaacga tctcggaagt
     7981 tgattttgaa acggtaattt tcccagccat caggtaagaa tggtgcaaag cttaattcgc
     8041 catcagttac tcgcatacca gcaaagcctt gaacgatgga taaccagctt cctgccatag
     8101 aggtaatgtg cagtccatct tctgtatcgt tgttaatgtt atcaagatct agtcttgctg
     8161 tacgtttgta tagttctact gctttatcat atttaccaag ttctgaagct aacactgcgt
     8221 gaacagctgg cgataagcta gattcgtgta ctgttaatgg ctcatagaat tcaaagttac
     8281 gttgttttgt atcaaaatca aagtcatcat agaataaata taaaccttga aggacatctg
     8341 cttgtttaat gaaacaagaa cgtaaaattt tatcccaaga ccaattttgg ttaatcggca
     8401 tatcttctgg ttttaatgta tccgtggaac gtaactcttt atctaagaac gtatcgtgtt
     8461 gcacaaaaat ctgccatttc tcgtcaaaag gataatacat gcgatgctca atatcttccc
     8521 atttggcgat ttcgtactcg gtcacaccta aacgtttttt cgcttctgca tctaagtttt
     8581 ctagcgtata acgaatcgtc caagcggcga tatagtttgt ataccagtta ttgctgacgt
     8641 tattatcata ttcatttggt cccgttacac cgtgaatcat gtatttatct aagcgatcag
     8701 ataaatgaac gcggtcggcc caaaaacgag tgatttcagt caatacttcg attccatctg
     8761 tttttaaata cgaatcatcg ccagtgtaat ttgtgtaatt gtaaatcgca taagcaatcg
     8821 cgccattgcg gtgaatttct tcaaatgtaa tttcccattc attatgacac tcaactccgg
     8881 taaaagtaac cattggatac agtgcgccag ctaggccaat tttctgcgcg ttgattttcg
     8941 ctccatccaa ttgatcgtgg cgatatttaa gtaaattgtg actcacagat ttatccgtta
     9001 acgataaata cattggtagt gcaaaagctt ctgtatccca gtatgtcgcg ccgccatatt
     9061 tttcgcctgt aaagccttta ggaccaatgt ttagtcttgc gtcctcaccg taataagtag
     9121 caaataattg gaaaatgtta aatcggatac cttgttgcgc ggaatcgtcg cctgcaatct
     9181 cgacatccgc tttatcccaa cgttcacgcc aacccgcaac atgcgcggct aataattcat
     9241 catacgtttt tgcttctaag ctttgtaaga ttttttctcc tgctggaaga atttcccttt
     9301 cctcataatc acgagatgtc gtaatgacta cacgtttttc tatttgcgct acttcatttt
     9361 cttttaggtc gaattgaaaa tgattttcgg cgtaaagtgc ctttgtttga tttgtttggt
     9421 ttgccgtatt ggtcgtattt tccatcacag ctgaaacggt gaaacgcggt gttccaaagt
     9481 tgtttggaat agtttttgtg acaagtgaac cgcgacttgc tgatgaagct ttttcgactt
     9541 cttgccagaa catttcttca tagttggcat cttcgttttg cacattgcca tctaaaaagg
     9601 acgttaaatc cacttttgca gcgctcttcg cttccacttg ataacgaata accgcaagtt
     9661 ctttcgttgc aacacttagg aatcgttccg ccgaaatccg gaatgtctta ttatttttaa
     9721 ctactgtgaa ttgacgtctc aaaacgcctt tttccatatc taaaacaagt tcaaaatcgc
     9781 ttacttcatc tacaaataaa tcgagttttt caccgtcaag acgtacttca attccgataa
     9841 aattaaggcc attaatgact tttccgaaat aatccgggta gccatttttc caccaaccaa
     9901 ctcttgtttt atctggaaac cacacgcctg cataataagt tccaatatgg ccgtcgccgg
     9961 agtatccttc ttcaaaattc ccgcgcatcc ccatgtaacc attaccgagt gaagttaggc
    10021 tttcttgcaa acgtttattt tctttatcta gtttggttgt ccgtaatgtc catggttcga
    10081 tttcaaataa ttgcttctgt gccatactaa aacctcctaa ttagcgacta gcagccatac
    10141 ttttttcact agtcttataa aatcttgtct ttaaaaatgt ccatgctatc attaacacca
    10201 ttccgagcga ctgaacagcc ataataatcg taatatcaaa gtagataaag ccgataatac
    10261 aagccgcaat cactggaatt cccagtgcat ttagcgttaa atttactgat tctttaaaag
    10321 aagcaatgct tgaaaaactg ctccgttttg tcatccaaat gaaaagcgtc gtaaacacgg
    10381 ttaacatgag tgagctaacg aaaatgatag aaccaatcat cagcaccatc gataggaaaa
    10441 caaatgcttg gttttccaaa taccactgcg ccgacaccca atcaacgagc gactcgcctg
    10501 acgttatttc gcttaaggtc gcgtcttttg ggtagctaac ttcaaaagtg taaccactcg
    10561 aatccgtaag cgtcatttct tggtctttga aattaattac attcttcgct ccactaagtt
    10621 ctgctttcgt taaattcaca ccagcaacac cattcgctgt tttttcgacg atgtgcgcat
    10681 ttttatcggt taacgcccca ttttcgagcg tcagtgcact aacttctgtc gccaattgat
    10741 ccgtgccaag cgccgccatt tttggcatta aacttggtaa atcaaagctt gactgattag
    10801 caaagtgcgc cgaaacagga agcaacagta acgcatttaa gaaaataaat acgatgacca
    10861 tttgccagaa tttcagtact ttccgaccct caaaaatagc ggttggaccg agtgtacttt
    10921 ttacatattg aatgataaac ggaacttttt tcattgatat cacagccttt ttaaaaatca
    10981 attatccttt tgttccaccg gcagttaagc cagaaacaaa attcttttgt aagaagaaga
    11041 acagtaaaca aattggtagc gcggctaaaa tggcgcccgc tgcgaataag gctacttttt
    11101 gttgttgtgg gttggcgatg aacgtttgaa gtcctaccgc aatcgttaag ttttctggtg
    11161 ttctaagaag gaatttcgca aggaggaagt ccccaaacgg tcccataaac gcccataaag
    11221 cttgaacggc aatcatcggt ctaacaagtg gcaagatgat ttgagcgaaa atgcggaaat
    11281 gtcctgcgcc atcaagtttg gcggattcat ctagatcacg cggcacggta tcgaaatacc
    11341 ctttcatcag ccatgtgttc atcggaatcc caccaccgat gtaaatcaat gttaagaacc
    11401 aatattgatc aagtgcgcca agtagcatcg ctaacacgta gaaagctgtt aaggccgcca
    11461 tcgttggtac catttgaata ataaggaaga aaatcaagct gtttttacga cctttaaaac
    11521 ggtaacggct atacgtataa cccgcaagcg tcacaatcgt tacttgcata atcatcgtta
    11581 caaccgcgat aatcagtgta tttttgtacc aatcaagata taatgtttca ttaaacaatc
    11641 tcgtgaagtt attcagcgtc caactatccg accactcaag cgtaaatgcc gcgatattcc
    11701 ctggtttgaa ggcagaagat gctgttatta gaatcggata caaaataata atcgttagca
    11761 cggttaaaaa caaatacgtg aaaaactgtg ttaagaactt tgttgtccgc tgatctttca
    11821 taaagtctct catttacatc atctcctcgt tcccaaaggc attcgtcttc ttaaaggcaa
    11881 tcatcgaaac agtaataacg ataatagaga taagaagcgt cacagcagca gctacagcgt
    11941 attgtggcga agtacctgtt gttaatttat aaatccatga aattaagata tcggttgatc
    12001 ctgcgcctgc tccgacactt ccgggaccac cttcattgaa taagtatatt atcgaaaagt
    12061 tgttgaagtt aaatgtatat tgcgtaataa ataccggcgc ggttacaaat aaaatcatcg
    12121 gtaatgtaat tttacggaaa cgttgaatcg cacttgcacc atcaattcta gctgcttcgt
    12181 atagttcacc aggaattgct tgaagcaccc cagtaaccat aacgtaaata tacggaaaac
    12241 caagccaacc ttgaatacta atcagcgcca cttttgtcca gaaaggatct gttttccaag
    12301 caatcgcatt gatatcaaca aatggcaaat ggtttagaag cggaatgact tgcgagttga
    12361 ttgcgccaat actgtcgtta aacatattgg aaaaactcat aattgtaata aatgctggta
    12421 ccgcccaagg aagtaagaaa actaccccaa aaagacgttt ccctttaata aagctttggt
    12481 tcgcaacaat cgccgtgaat acaccaacga caatttgtaa agaagtggca cagattgtcc
    12541 aaatgagtgt ccacgaaaat acgcttagga acgtgtcacg atacgaactt aggaagaaaa
    12601 tattaaagaa gttcttaaat ccaacccagt caattaagtt cgctggcgga atatggtaaa
    12661 aatcatagtt ggtaaatgcc atgaaaagag taacaagaac tgggaaaata ataacaaaag
    12721 tcatcactaa gtatgcaggt aatgtaagta agtacgggaa acctttgtcg agcatatttt
    12781 ttataatagc aatcgcagaa cggttaacag tttcacctag gttccactgc atagccacgc
    12841 gtcttgcatc gaaaatattt ataaaccaaa agcctataaa tagtaatgtc acaattaatt
    12901 gtaaagtacc ttcaatcatt aaaaataagg aatggtctac acccggtaca gatccaagtg
    12961 ttacaaggcc aatcagtgca ttcagcccaa ctgcaaaaaa ttctatgata aacaaagcaa
    13021 atagtgcgaa aaagacaatc cctttaaaat tttgcttatt ataaaattga ccaagtcccg
    13081 gaatgattga taacaaagtc gcttgacgaa catttttaat ttgtttttgt tctagtttca
    13141 ttttgttacc ctcaattcta gatatagatt cactagctaa gttgaaaaaa atggcggagc
    13201 gcgctatctt tgccccgcca aatcattatt atttagtata tttttgcgtt acgttatctt
    13261 caattacttt tactgcatca tctgctgatt gttgcggtgt tttcgaacca gaagctgcat
    13321 caaacattaa gttttcagca cctgtccaaa cttccgacat ttctggaata tttggcattg
    13381 gttgcgcatt tttgtattgt tcgataacag cattagttaa ttcatcattt tttgatttcg
    13441 ctgtatcgcg tgcttttaag ttagctggta cttcatttgt catatcatat aaagtttctt
    13501 gatttttttg gttagttaca taatccaacc atttttgagc tacatctttg tttttagaat
    13561 agttacttac aacccaacct ttaccgcctg caaatggaga gtattctttg ccattgttta
    13621 gtgtcgggat ttttgctacg ccgtaattaa tttttgcttc tttgtagttt gctgctgacc
    13681 atggaccgcc tagaattgct gctgctttac ctttaacaaa ttgatcttgg ataaagtcat
    13741 ctgcactctt attgtcttgc ataccttttg gccatacatc ttggaaccat tttgttgcat
    13801 aagtaattcc ttcaaccgaa cctttattgt ttaaaccgat gtcttttgga ttcgtacctt
    13861 catcgccgaa tacataaccg ccgtatcctg caagtagtcc gtaagagaag tagaaatcag
    13921 tccattttgc taagaaacca gtattttttc ctttttcaga agtgaaggca aaacgagaat
    13981 ctttagaaag tgtttctaaa tctttgaaag ttgctggagc tttgtcgagt aaatctttat
    14041 tatagtaaag tactagagtt tcaataattg ctggagcgcc ataaatttta tcgtcaatgg
    14101 ttacttgttt ttggtctttt tcatcgtaat cgtctttatt tccaagtttt acttccgcta
    14161 aatgtccttg ttggcctaag cttccaattc tatcaaatgc ggacatcatt acgtctggag
    14221 cagttccagc cgggccatca agtggcaatg cttctaatgt ttcgaacatg tctttttcga
    14281 ctacttttac tttcacgtca ttatcttttt caaaatcacc ttttattttg ttcacgtagt
    14341 ctttgtagcc tgcgtcaacg gaaaccgtta atgttttttc atcagatgag ccagatttac
    14401 tagtgtcttt tccaccacca catgctgcta agcttaaagc cattactaaa accgccgaaa
    14461 ctattcccac ttttttgaaa cgcttcattt acttttcctc ctctttatga aaaaagtcgc
    14521 cctttactgt ctgatttcta agtccccatc ttttttcaat tctttttaaa gtttgtgaat
    14581 taggttaacc tatgcattta ttatatgctg atttcgaaag cgtttacaag gagatttcac
    14641 atgttaccga taacaacatt ttttcggtaa acatgtgaaa aattccttta cgccattgat
    14701 ttagctgttt tctttaacaa caagaaatcc ttttgctggg acaacaagat tttctgttac
    14761 agctcggttg ttccaaatat ctgtcgctgt attttcaaat gaaattgtga aatctttatc
    14821 ttcttttgct tgattgaaaa ggaaatgcag tttttcacca tttaattctt tagaaaatgc
    14881 tgtaatgccc gtttcgctac ttgcacctag ccaagttaat tcgccggatg tgataattgc
    14941 ttggttatct tttcttaggg caattaattg tttcgtaaac gctagcatat cttggttttg
    15001 cttcgtttca tcccattcca tacacttacg gcaacctggg tcatttcctc cgtccatgcc
    15061 gatttcagtt ccgtaataaa tacacggcga accagtgtgc gcgaacatga aggcaagcgc
    15121 ttgtttcact ttatcctcat cattattagc acgagttaaa atacgcgccg tatcatggct
    15181 atcaagcata ttaaacatta cttcattcac ttgatttggg tagcgcatat attgttcatt
    15241 aataccagaa accatttgct ccggtgtgat tttttcttca ataaagttct caataatcgt
    15301 ttgtgtaaat ggatagttca ttacggcgtg gaattcatct ccaagtaacc aaatccacga
    15361 atcatgccaa atttcaccaa gaatataaat atcttctttt tccgcttgga cagccttttt
    15421 aaattctttc cagaaagcat gatctacttc attagcaaca tctaagcgcc aaccatcaat
    15481 gtcaaattcg cgaatccagt aagttgcaat atccagtaga tacttctgaa cttctgggtt
    15541 agccgtattt aattttggca tatgcgtcgt gaaagcaaat gtatcgtaag aaagtgttgg
    15601 ttctccttca atattgccat tttcattttg acgaacaggg aaactatgga tgtggaacca
    15661 atcacgatat gcagattttt cttcatttaa gacaacatct tgccactctg ctgaagtatc
    15721 gccaatgtga ttgaacaccg catctaacat aatgcgaatc ccacgtttat gcgcttcctg
    15781 aactaatttt ctaaacgttt ctttatctcc aaaatgtgga tcaatttttt tataatcaac
    15841 cgtatcgtat ttatgattgg ttggtgcttc aaacacaggt gtcaaataaa ccccattaat
    15901 accaagctct gctaaataat ctaaatgctc gataattcct tctatatccc cgccgaaaaa
    15961 gtctgttgtg ttcggatctt tacttcccca cggcaaggca ttttccggag aaatagccgg
    16021 attcccattt gcaaaacgtt ctgggaaaat ctggtaccaa atagtattcc caacccattc
    16081 aggcgcctca aaagtatcca ccgcatggat aaatggaaat ttaaagtaat aatccatcgt
    16141 agctaaatta gcctcagttg gctcaaagaa accacgtccg ccgtaaaatg ttgtttctcc
    16201 ttctgtatct gttagtaaaa agccatattg aagacgtcta tgttctggtg taattgcaaa
    16261 aaaccaataa tcgtgctctt ctgtttctgc gattttgcgc attgtataag attcactttg
    16321 ccattttcca tctttccata agtaagggtc ggcagcaatt agagtaacct cgctaatatc
    16381 caagcgtttc gttctaatcc gaatatgtag tgttttagcg tcataactat aagcatagct
    16441 actcgctggt tgatgataaa tccctgcttt ttccattttt tctcctccta tatcacctat
    16501 cgttctattt caaattagca tttccattaa agcgtttgca accttttctc gctcgttaac
    16561 ggtaacaaga ttttctaact atttcatatt ctttcaacat aatatagaag aaagccaatt
    16621 ctccctcctc ctttaaagtg acaaattagt aactttactg atttaaagta aagagctata
    16681 ataactcatg gactaatgaa atctatcgaa aaaaggtcta aaaggaggat aaaatggaaa
    16741 atactttaag ctttaaaaaa caagggtatt ggttattttc cagcgcaatc attattggtg
    16801 ttctttttct tcttttgcca cacatcattt ccaatattgg agtgttagaa tttataggtg
    16861 ctttttttaa cgccctatgc atgggggtta ttgcttttat catactaaaa gcagaattcc
    16921 tcgattggtt taaacatttt agtttcaaat ggatcctcat cggtgctcca gcattaatta
    16981 ttatcagctc tattttcaac attgcttggg cttacttcgc gggcagtact actgaaaatg
    17041 gtatcaacag tgtacttaca tggtcttacg ttttcacaag catcccgttc atgcttcttg
    17101 gcgaagaact actatccatt agcttactct atgccgcttg gaaaaaatgg aactggaaat
    17161 tctggcaagc ttccttgctc tgctcgttac tatttgcgac gtggcatctg acttcctatg
    17221 attttaactt cttacaatgt atcattactt tagcacctgc tagactcatt ttgaactact
    17281 tatttaagaa aacaaactcg atttgggtta ctttcatcgt tcacttcatt tttgatttca
    17341 tcgcattttt acccatttta ctcaaataaa aaaacgctag gaataaagat tcctagcgtt
    17401 tttattactc ttcttttcca gttgtagagg ctcttatcag taattcagga gtaaataata
    17461 ggtttccttg aggttttccg tgatcattaa ttttcgcaag taacatcttc gcgagttctt
    17521 cccccatttc aacgacggga gattgaacag ttgtaatttt tggcgatgaa attctatcta
    17581 aaaaaacacc atcaaaccct gttacagcaa tattttcacc aaaacggcga ccaaaagcag
    17641 cggcagcacg aacaacccca atggcaattc gatctgatgc gcaaacaatc gcaatttttt
    17701 ctgagttata gcgtagtaat tcaaatgctt tttcttccgc gacactggaa ctattcgcaa
    17761 taaaataact ttccggttcc aaaccatgtt ctttcactat ttcttcatag ccttctaggc
    17821 gcgatttcat aaactgttca tctaataaat caattcccaa aaagacgatt cgcgaaaaac
    17881 cgatctctac catatgctct gttgcgagcg cagtcccttt tttattatct acatcaatag
    17941 aatcatagcc acgtttattt tcaccataaa aaataactgg tttatcaata tctaaaagtc
    18001 ctaaatcata atctttgtcg cgtattcccg tgacaataag cccgtcataa gctccgatat
    18061 tcctggatct ttgcgtaacg agttgaagcg aatagtagta tttatctaac tcccgactaa
    18121 ttcctgttaa taaattcata taatatggtt caactgtatc aatttcttct aaaatcaaaa
    18181 atttaataac ttgcgtccta ttttgaacaa gcgcccttgc agcataattt ggtacatact
    18241 ctaaggcttc cattgcacta taaacaagca ttttcagttc atctgagact tgatctggat
    18301 gattaataac ccgtgaaact gtcattttgg agacatttgc ccgtttcgca acatctgcta
    18361 aagtcgccat ctccaacctc ctccattcat aatcttcctt attgtaccat cttttacaca
    18421 aaaaaaaata agaattaacc cacaaaaaaa gcattctcat taaaagtctg aaaatgcttg
    18481 gtttattatg aatatgtaat gagtcatttt atagtgtttg ccactttttt tgagagactc
    18541 tgcgttcctt cgtttgttga taagttttaa taatcaatct aattaattga tgagctccgc
    18601 caataataat tccaatagcg atagcaacga gcgtagttgt cagaaaacta ataaatggaa
    18661 aactagatgc attcattgca gcaattccta atataaaaat gataatagta ggtagtacat
    18721 aatacctaat gtcctgttcc tgcatacaaa gcgctccttt acccaaaata ataactccca
    18781 tcaactactg aaattataac gcgaaaactg gcttttttca aggcttggat ggatttccat
    18841 gctcctcttt aaaaacgtta aatggctcta tatagcgctt tatatagata cgcaaaatcc
    18901 actcattatg aattcatcaa aaagaaaaat ttgttaccac tttgtaacat tacttaagtc
    18961 catttactta tatactgtaa cacttatatt tattcaattt tatagataag tattaattct
    19021 tatttccatt ttttcaagtt ttattgcctg tttttttata acatatacaa aaaaagtgtg
    19081 ctcttttttc taaccaaaca ttatttttca aattgtataa aaaacttgat tcgagcagtt
    19141 tttttaatta tctaggaaaa ctcggcattt aaaatgcctt tttcatctaa aggaaattta
    19201 gttttccgat gaatattctt ctttaaaatc aaaatttcca ctttttacaa ataaataaac
    19261 aaccgttatg cttacattgt tccattacaa aaacggaaga gttccccctc ttcccccgaa
    19321 ggtctcttcc gtttttttct cttgttattc ttttaaatga taaggatatg tggaaaccac
    19381 tacatccctt ttcattagaa gtcttgtgcg aatcaatagg cttgtttgat tatgaaggac
    19441 attttgccaa ccttttctag gaataaattg tggtattaat actgttagtg agtaattgtc
    19501 ttgatctgct ttttgtttag ctgtatcaat aaacttcatt aatggatctg aaatagatcg
    19561 atacggagaa aacagattag ccatacgcac ttcaggatgc accctattcc atctctcaac
    19621 aaattctttt tcctgttttt tatcaataga gatatgaaca gcaatgactg tatcaccaat
    19681 agatttagca tattgtaatg caccctctac aactttggtg gtatcagaca cacaaataat
    19741 gacggcattc cctttaaagt ccggcaagtc cattgtttcg tcaattctaa gttgcggtcc
    19801 gactttccta taatgatgtc tcgtacgatg gaaaacataa atcataattg gcataaagac
    19861 aaatactggc caaacagatt caattcgagt taagaataac actaataata ctgtaaatga
    19921 aattgatgct ccaagtaaat tagccgataa tgattttttc caacctttag gacgctgttt
    19981 ccaccatttt actatcatcc ctgtttgaga caacgtaaat ggtatgaaca ctccgacaga
    20041 gtataatgga atgagtaatt ccgttttccc tttaaacaaa ataatgagta ggatagaacc
    20101 cacagctaaa gtaataatcc cattagagta gcccagtcta tctcctcttg ctaaatacat
    20161 tcttggcata aatttatctt tcgccaagtt aaatgctaac atcggaaatg cagaaaatcc
    20221 ggtattagct gctaaaacta aaataagtgc cgtagtggct tgaataaaat aaaacatgaa
    20281 gtttctgcca aatacatttt cagcaatttg agaaagcacc gttaccttta gctcaggaac
    20341 agttccataa acaaaagcaa gtactgttat tccgacaaag aagaaaccaa gtaagcctgc
    20401 cattaatgtt aatgtttttg cggcattttt tggtcgtggt tctttaaata aaggaacagc
    20461 atttgagata gcttcaatac ccgttaaaga agctgaccca gatgcaaatg ctcttagtaa
    20521 aagaaaaatg gttacaccct gtacgtgagt ccctactgca gctgtttcat gacttgcatc
    20581 cataccagtt aatactttaa ataaacctgt aaatataaga gctataatag aaaaaacaaa
    20641 caaatatact ggtattgcaa gtaaactagc tgattcagta atacctctca gattgataat
    20701 cgttactcca acgacaagaa gtacagctat aggcactgca aacggatata atgatgggac
    20761 agcagaaacg attgcatctg ttccagaaga aacacttaca gcaactgtaa gcatataatc
    20821 tactagtaaa gatccacctg cgattaaacc ggcattattc cccaaattct ctcttgaaac
    20881 gatataagct cctccaccat gcggataaga gtatataatt tgtttgtaag acagattaag
    20941 agcaaacaaa agaacaagta cacaaagcgc aattggtaat gaataccaca tagcggcagc
    21001 actaacagtt acaagtacca ataagatctg ttctgtacca tacgcaatag aagaaagtgc
    21061 atctgatgac agaactgcta aagcttttaa tttccccagt ttttggtctc cagcttctga
    21121 tgttttcaga gggcggccga ttaatagtct ttttagcggc gaagccattg tattccctac
    21181 cttttttatt tgatttttag ctaacttcaa gttgaccaga cacattatag cacagctgat
    21241 tttagattgt aatactaatt tgtattattt tagctgacta attatctttc aagtgaataa
    21301 ttgttcataa tgcttgtttt tacgtcttta aaaagtagaa atttattt
//
LOCUS       DASEAA010000032        21253 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.032, whole genome shotgun sequence.
ACCESSION   DASEAA010000032 DASEAA010000000
VERSION     DASEAA010000032.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 21253)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21253)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21253
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.032"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(630..2180)
                     /locus_tag="U0342_001011"
     CDS             complement(630..2180)
                     /locus_tag="U0342_001011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydantoinase/oxoprolinase family protein"
                     /protein_id="HEM2422366.1"
                     /translation="MYKIGIDVGGTNTDAVILDENQQLIHSVKMPTSEDIETGITESL
                     HRVLSETGIDRSKVTHAMLGTTQCTNAIVERKKLAKVGVLRLGYPATASVLPYTAWPE
                     DMVGFLSGKYKLTGGGYEYDGQVLSEINEAEIRETLASWKGEVESVAVVGVFSSLKND
                     QELAVQKIIEEELGADIPVSISSSVGSVGLIERENATILNAALFKVIAATSDGFEKAL
                     EQEGIAHAEIYLCQNDGTLMSLNYARQFPILTIACGPTNSIRGASYLAGLKDAMVLDV
                     GGTTSDIGVLTDGFPRESSLAVDVGGVRTNFRMPDIISIGLGGGSLVREKDGDITIGP
                     DSVGYRISEEALVFGGKTMTTTDIAVRLGRAEIGNPELVAHIPTDFAEKAYKKIAEMT
                     EDAIDKMKTSSGSVSLVLVGGGSVIIPDEISGVAQIFRDKNGPVANAIGASISQISGQ
                     YEQIYIYSQIEREEALQDAEQKAREQATLAGAVTDSIEVVEVEEIPLAYHPGNATRLR
                     VKVVGNLV"
     gene            complement(2173..3273)
                     /locus_tag="U0342_001012"
     CDS             complement(2173..3273)
                     /locus_tag="U0342_001012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF917 domain-containing protein"
                     /protein_id="HEM2422367.1"
                     /translation="MRYLDEQAIENIAIGAAFLGTGGGGDPYIGKMMALTAIKKHGPI
                     KLLSPEEIADDDYFIPAAMMGAPSVLIEKFPKGDEFVRVFEKLGRYVGKEVKGTFPME
                     AGGVNSMIPIVVAAQLGLPMVDCDGMGRAFPELQMVTFHLDGISATPMAITDEKGNIG
                     IMETIDNKWTERLARVTTVEMGASSLVSLYPCNGAQIKQSSIKNIVTLSEEIGKVIRE
                     TSMDEAEKLQKLLDVTHGYHLFEGKITDVVRETRAGFNFGRVKIDGLNKDTGSEVIVH
                     FQNENLVAEKNGEPIAITPDLICMVDLETLMPVTTEALKYGKRVRVMALPADDAWRTD
                     KGIETVGPRYFGYDVNFEPLEELVKKEERRHV"
     gene            complement(3274..4557)
                     /locus_tag="U0342_001013"
     CDS             complement(3274..4557)
                     /locus_tag="U0342_001013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytosine permease"
                     /protein_id="HEM2422368.1"
                     /translation="MTEKKSVEQTQSWQSLAFVWTGAMICVPSLLVGGTLISGMPLWE
                     AILIALLGYGVIVLFMIYQGMQSSDLGIPAVSVASQVFGEQGSKKIISILLAIACLGW
                     FGIQANVCGAAFSQFLGIYGINLPVPVSSLIWGVIMLLSAIYGIRILSILNYIAVPVL
                     LFVCIYGLVVSLNDGGLAIVENYKPAGSMSFMTGLAITIGSFALGAVIAGDYSQYTKS
                     RKDVVKAAIVGILPSGVLMITVGAVLALTAGTADISVVFTNLGLPVLGIIGLILAAWT
                     TNAVNAFSGGIAIINVFNISEKYHKVAVAVAGGLGTILAVIGILNHFVPIMSVLSAMV
                     PPVAGVMIASYWIVQKGDKSKWAPVPGVNWLGVSSWLVGAVIAGIPVILTFFPELPQL
                     PNQPLIGIILSLAVYLIGAKVLSGKTNNVENLEGK"
     gene            complement(4691..6286)
                     /locus_tag="U0342_001014"
     CDS             complement(4691..6286)
                     /locus_tag="U0342_001014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PucR family transcriptional regulator"
                     /protein_id="HEM2422369.1"
                     /translation="MSVKLADLMKLPSLKEAKVVSGKSGLSKLVSSISVLEYTEVALL
                     EDDLFDNDEFYGSEIVVSAFVNIRDDVEAQCRTIERLHKVGEVALILYYVGIFVPKMD
                     QKLIDFANELDFTIIVMPENEMSLRYSEVIYEVVEAIVKQEMTDTNFVTESLEQISSV
                     RPPQRNIDTTLKILSDRTHTSLVLTDNSFQVINSITWPRTRHWDFERIIEASKQIGEH
                     ELVQLTLDERDFYTARKPIFQDGMQAMHLFMMKEKGVLTADVVMQITEVVQVFMNLWG
                     RNYVEISTAELMKAILNDESVKMRRLGKILNVDVSSIKWMWLVKTEEIRDNEQVLAEL
                     KSFVASHFQVSLIDLFEDNIVVLLDNSVAQRDRTHTANEFAMMMKEHGIDLKITVCQG
                     MEQTSDVQSAYSLVNEYKNAANAIYANKSIYSLQEIDFAAKCVEIVDRGELAIAEQMR
                     PLKPLEDNDELIETLSVFLLEGESNYNQAAELLFLHKNTIKYRIQRINELLQYPATKI
                     PESYNLYLAVAIRRILGGNNNNK"
     gene            6442..7389
                     /locus_tag="U0342_001015"
     CDS             6442..7389
                     /locus_tag="U0342_001015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MoxR family ATPase"
                     /protein_id="HEM2422370.1"
                     /translation="MSIEPSIKIEEIINEVEKVIVGKRHVVKLSLTALLAGGHVLLED
                     VPGVGKTMMVRTLSKTIGVSFKRIQFTPDLLPADVTGVSIFNPETRDFEFRPGPVMGN
                     IVLADEINRTAPRTQAALLEGMAENSVTVDGITRKLANPFFVMATQNPIEYEGTYALP
                     EAQLDRFLLKINIGYPTVEEEMQLLTLKQYQDPLDQTQQVVTLSELLDLKNKAKQVFI
                     DDVLKNYIIRLVDATRKHPSVALGISPRGSLAFMQAAQAFALIEGRDYVIPDDIQYLA
                     PYIFTHRLILKSEAYYNEETAESIIASILKNTSVPVEKR"
     gene            7394..8542
                     /locus_tag="U0342_001016"
     CDS             7394..8542
                     /locus_tag="U0342_001016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF58 domain-containing protein"
                     /protein_id="HEM2422371.1"
                     /translation="MLKKRLLLAFRWIIMLIIYAGLWTYTLFQGDTASWFLTYFFSFI
                     LLLLFLSSIYPLKAWKVNRRFVKNTYHDGDLIDMQVSFTRKSRYPVGYLLFQQKIPAS
                     FGNVSARQQVVYPLFKKHFTVTLAGFVGVRGIHSFPPVDVETSDAFGLLERSRQLSSE
                     KSLTIYPTYFPDVLEKISEASPENERNAAYWTLKKNSNLHSLREFSSGDRISLIDWKS
                     SAKSDQLMTREFENSATSRLSVIFYGASHPNFELSLRAAYSFIRKISEDNGEIRVTLL
                     GDQTSKFAPAKGTSKLQDISTAFAEIAPVDNLTLQESLDSNLHSGEKILLFTPCIDTM
                     LMQKVTRLTDNKQLQIITFQSEHSKSMDAPAIFLEPASLLSRWEREAK"
     gene            8539..10698
                     /locus_tag="U0342_001017"
     CDS             8539..10698
                     /locus_tag="U0342_001017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase domain-containing protein"
                     /protein_id="HEM2422372.1"
                     /translation="MKRYLTLVMLFILSVLLISEWIYPFAELTELSTANWIILFITLS
                     LGSFFLRLKYYWTIPLHIVMIIFVSGIYYAKGGILAGNWFVSFFQITFNGFRDMVQFR
                     SSDISMDFILIVFLIALWLLSYITTYSILRKQRVMSVLVLTVAYLAVINTFTDYNSNW
                     AIVRTVLEGFLLLHLALASRIAAPNRISADSLKRNGLFYHIFVILLLAVFVFSSLMLP
                     KKAPIFPDPVPTIKNALGINTTRTVGYSEDDTTLGGALKKDNATVFTARAEKGHYWRV
                     ESKTVYTGTGWANANSADVISFSSGDNFPIQLTEQTTGATNTAEISFASSNDYMPYPY
                     GTQTVNGAVDSFSANLTIERVGPVDTIKNYTVQLKTPVYNIEKMQNADFSTLSNAFVS
                     QYTQTPKDLPDRVTKLANKVTKDADSIYDKTKAIERYLSASGTFTYSTEDAKETPRGA
                     DYVDQFLFETQIGYCDNFSTSMVVMLRSLGIPARWAKGYTPGEGEKKENDAKTTYTIT
                     NNNAHSWPEVFFPGTGWVPFEPTATFSNPENFQEPTTETANKPETPNDSTSTPETPNT
                     ADKTPEQDNGSSSTGETPKKEEPKTETAASNFEIPSWVWWIPAGLVVTLLALAIIFRR
                     RIRRYLLLRSLRNSPEFGKTYHRLMKLLASYGYVRESSETLRHFSTRVDAELTTTEFS
                     RLTKMYEAQIYSNNLTEKVITAEETQLVQQVIARLTK"
     gene            10815..11570
                     /locus_tag="U0342_001018"
     CDS             10815..11570
                     /locus_tag="U0342_001018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4866 domain-containing protein"
                     /protein_id="HEM2422373.1"
                     /translation="MTTIFPKEQNVAPLFEQILANPTACRRFKDVFLDNLESYQETRG
                     FEKDDTLFAKIILSAYRQSDVSALLLGVCGRTLFELLRQAFLIPKKLTVDNPFFLTDK
                     EGNFIAKKDDISNREQEKFQEIYQSDLHHSETTIFLVDDDDIVHSYEPDFSISTKRIN
                     KKRGILVLYSLPDTLKLGMTESEVYAFIWKTFLHIQEIIPSSRIFYGQETSENADELG
                     VFLPIHHFEKKMLQNIEQVNELVDALREQMVNK"
     gene            11591..12256
                     /locus_tag="U0342_001019"
     CDS             11591..12256
                     /locus_tag="U0342_001019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1275 domain-containing protein"
                     /protein_id="HEM2422374.1"
                     /translation="MARSRQISESIGLGLLLALAGGFMDAYSYIERGQVFANAQTGNI
                     LLFGINISEGNWAIAIQYFWPVVSFTVGIAISEVIHRRDIRRLHWRQLSVLIEAVILI
                     GVAFIPLDHNLIANSLISFVCGIQVESFRKMHGRGVATTMCIGNLRSATQNLCDYFEY
                     KEKQYLRNSLLYFTVILSFIIGAVVGNFFIQLFAQYAILVCAFLQFIAFMMMFIDRES
                     KII"
     gene            complement(12300..13025)
                     /locus_tag="U0342_001020"
     CDS             complement(12300..13025)
                     /locus_tag="U0342_001020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422375.1"
                     /translation="MKDKTKKRKWNWAQILAIFVLVTLVVSMVYATVNLITAPSGNVP
                     EGQQTKGDYSLMLMQCVLGVVVLFLPSIISKKMKFVIPNAMYIVFIVFLYCAIYLGEV
                     RSFYYLIPNWDTILHTFSGAMLGGLGFSIVSLLNNDERITLSMSPVFVALFACSFAVF
                     LGVFWEFYEFAADSFGMNMQKTMLEDGTMLQGHAAVADTMGDLFVDFLGAFVISIIGY
                     FSIRKNKKWMKNFEFKKVDEEVK"
     gene            13259..13807
                     /locus_tag="U0342_001021"
     CDS             13259..13807
                     /locus_tag="U0342_001021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4240 domain-containing protein"
                     /protein_id="HEM2422376.1"
                     /translation="MKKVSSLLTQDQFWGIIDNSDKGSKLEELLEKLSEDELFGYDYW
                     WNYFHKKSYNQSLWAVAYVVLGGCSDDGFDYFRYWLITRGKAVFTSAVENADTLCGEF
                     DLLTEDEYPENEEVAYLVMDIFENKLGKDFDDAENEAESRIEFEEVSMPPIDFEWDED
                     DEDSIKKVCPNTFAKWWNNDKF"
     gene            complement(13855..14784)
                     /locus_tag="U0342_001022"
     CDS             complement(13855..14784)
                     /locus_tag="U0342_001022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM2422377.1"
                     /translation="MARHAQKRKARKGRIFVTILVALLILVGVVAVIGYFQYQSSLKE
                     AQNESKLKDYKFNGAKAVGDEINVLLIGSDSRGEDQGRSDSLMIAHYNTKTNTPKLVS
                     IMRDTYVDIPGHGKNKINAAYSYGGPELVRQTIKENFGVDVQYYVVANFEGFPKIVDT
                     LAPEGIKINAEKDMSKNIDANIKKGEQVMDGKTLLQYARFRKDAEGDFGRIRRQQQVL
                     EALKEQAIDVGDVAKIPDVIGKLQGYSSTNIPTGTLMSIGADFLLGKTETMEKFAIPV
                     EGKWHNERIDGAGAVLRLDDMAANAKALQDFLK"
     gene            complement(14921..15235)
                     /locus_tag="U0342_001023"
     CDS             complement(14921..15235)
                     /locus_tag="U0342_001023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422378.1"
                     /translation="MEEMEQPEKKVIIRGKGIHNKWKWSTIIVSILSVIIISVLSYQL
                     YSVSQNTPENNTNGTMQGPGGGEMPSGTPPSGEPGQAPNSSDDSSDSGTSDSTTSSDG
                     TL"
     gene            15407..17443
                     /locus_tag="U0342_001024"
     CDS             15407..17443
                     /locus_tag="U0342_001024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding transpeptidase
                     domain-containing protein"
                     /protein_id="HEM2422379.1"
                     /translation="MASYGGKKRNNKKAIIIGSIAAVVVLAGIAIYFFIQNQHKDEKN
                     ALAAAETFTSNIAKEKYDKLGSSVSSESLKKVEFTKKEMEDKYQAVYDGIGAKDIKVK
                     NLKSVYDDKENKFNLTYELEMRTSLGKLATQKYKTTISKQDDDWKIDWKPALIFPGMV
                     KTDKVRITEDEAERGQIVDRNGNPLATTGQFAEAGVVPSKLGEGDEKVKNIADISKKL
                     EVSTDYINKQLDQKWVQADSFVPLVTLNKDNLPEATGLTYAQKEMRTYPLNEATSHLI
                     GYVGEVSAEDIEKNPKLSVGDVIGKSGLERYYDKQLRGKNGGAIKIINDQTKQEDTLQ
                     KIDKKDGEEIKLTIDAAVQKKAFDSLGSETGAVTMINPTNGELLALVSTPSYDANQMV
                     LGITSEDYAKYNDDKRLPFLARYANRYAPGSTFKTITATIGLDTGITKPDKVREISGL
                     QWQKDASWGKYFVTRVHDVPKVNMTDALVHSDNIYFAQEGLEIGKDKLTAGLKKFDFD
                     KEYNLPFTMKPAQISNDGLNSEILLADTSYGQGELLMSPIQQAIAYSAIASDGKMPYP
                     KLDTKEKAGKETQATEAASANQVKAALVKTVSDPAGTAHALQIQGHSIAAKTGTAELK
                     EKQGEDGLENGFVYAFDADNPNYLMVGMIENVKGRGGSGLVIDKLKPVIESMYK"
     gene            complement(17485..17987)
                     /locus_tag="U0342_001025"
                     /pseudo
     CDS             complement(17485..17987)
                     /locus_tag="U0342_001025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463969.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2004 domain-containing protein"
     gene            18125..19393
                     /locus_tag="U0342_001026"
     CDS             18125..19393
                     /locus_tag="U0342_001026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="module of peptide synthetase"
                     /protein_id="HEM2422380.1"
                     /translation="MVKITSYPAEPSDVKHYISGEKMKNDHHLHTVLTFDNHLNIDVL
                     KKAVMQSTKKLPLLLCHFKETKKGAFWQESVFSAEDLVFLVETQAPETEVDRALVTKL
                     STENGPQICFTVVRADTSDQLVVIMNHMLADGAGFKEYLYLLSELYSNLLENPDYAAN
                     LSLGSRSLKQIFDQLSRKDIKSIFTEKTKQKAVHNPTFPLKGDPKNPKVIWTKLPKED
                     FSEIIHFAKEHEATVNDVLFAAMARTVQQTTGQQEMSIDCPVDLRKYLPSKTSSGITN
                     LTANITCQISADDDLTSFESTLQAVKNSLNPQKNSFAPLRIYYLLELIFKKKNYSVAK
                     KASEKMYSIPKTSFTNIGIIDEEKLVFEGSTLTDCFICGSLKYAPFFQVAATTFRGEL
                     TLSTNLHGTTQDHAWQKDFLEQMISEFPSK"
     gene            complement(19426..20043)
                     /locus_tag="U0342_001027"
     CDS             complement(19426..20043)
                     /locus_tag="U0342_001027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear targeted protein LntA"
                     /protein_id="HEM2422381.1"
                     /translation="MKKLVAWFNGLSKMWKVVVIIGAVFVVIIALTTGENEGEQTKTK
                     TNSDKIVKTTSKPKLSTKDLALIKADLAEFEGRELSSEKILKDTIKEESWSDLDFAND
                     NINQMIGTMKRYQQEILNIDAVKRSSEASADTEAFKKVFKEWSDFKIERIQVTIDLLN
                     GKKDSEAAFKKSYPNQIIFKKVRTNKLQTALNNLKVGYELLDSQK"
     gene            complement(20199..21044)
                     /locus_tag="U0342_001028"
     CDS             complement(20199..21044)
                     /locus_tag="U0342_001028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2422382.1"
                     /translation="MTYLVTGATGGLGGYALNYLKELVPMSDIYALVRSEEKGADLKA
                     AGFNIRVGDYSDAESMKQAFVGIDRVLFVSGAPGNRQVEHENVVNAAKAAGVSYIAYT
                     SFAGADKSTSALAEDHFFTEKVIEKSGIAHTFLRNNWYFENEMPMIGGALSAGKFVYA
                     AENGKVGWALKREYAEVAAKAVAGADFPEILELSGPLMTYEELTKALKEATGKDFDVI
                     SSDDKGFVENLVSAGLPQPVAEMFLSFQHDIKNDQLDVTSDDFEKALGKPLTNRVDAL
                     RELLK"
     gene            21143..>21253
                     /locus_tag="U0342_001029"
     CDS             21143..>21253
                     /locus_tag="U0342_001029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2422383.1"
                     /translation="MKGLKKMKYSIQFSDAIHILAYIEIFKNTNLLSSEII"
BASE COUNT         6442 a         4316 c         3864 g         6631 t
ORIGIN      
        1 cacttccttt gaatgttact ttttatgtaa aatccatgta actgcaataa gatgttcctc
       61 taagtcatcg tattcgctcc attggctctt gttactcatt gtttcttttc cagttcaaag
      121 tccacttccg gggttccctc tagctcttcc accaatggta attgattcta ttcaaataaa
      181 ttcagccatt cgtttcgagt gagatattca tgattttgat acttcacctt gttttttgcg
      241 cgctattcag gcacatatgc tttatctata ataacatctt tcggactact acccaatcca
      301 aaaaagtcat gtgaaaaata cggaacaaac ggtaatattt caattgattt agaagtgaat
      361 gacgcgcggc aagcttttgt tcggttcctt tattcattta tttaccctac tagaatattt
      421 ttagttagcg tttgggttgt ttttctagat aattagtata agaattgatt tatttaaatc
      481 catgtctaaa ataacacaaa ttgtgtcaat atacataatt ttatacatat gggattacgt
      541 tatacaaaaa tagactggaa gcaaagtaat ttcttacttt gtttccagtc tgaagtcagc
      601 aatgcactac tatttacttc ttacttccct taaaccaaat ttcccacaac tttcacgcgc
      661 aatctggttg cattacccgg atgatacgct aatgggattt cttccacttc caccacttca
      721 atcgagtcag tcactgcacc ggctagagtt gcttgttctc tcgctttttg ttcggcatct
      781 tggagcgctt cttcccgctc gatttgagaa tagatgtaga tttgttcgta ttgtccgctg
      841 atttgggaaa tggatgcgcc gattgcgttg gctactgggc cgtttttgtc gcggaaaatt
      901 tgtgcgacac cagagatttc gtctggaata atcacgctac caccgccaac aagtactaga
      961 cttacactcc ccgaactggt tttcatttta tcaatcgcat cttcggtcat ttcagcaatt
     1021 tttttatagg ctttttcggc aaaatcggtt gggatatgtg cgactaattc agggttaccg
     1081 atttctgccc tacctagacg aaccgcgatg tcggtagtgg tcatcgtttt acctccgaaa
     1141 actagtgctt cttcggaaat acggtagcca acgctatctg gtccgattgt tatgtcgcca
     1201 tctttttcgc gaacgagact tcctccacca agtccgatgg aaataatatc tggcattcta
     1261 aagttggtac gcactccgcc aacatcaacc gcaagcgagg actctctagg gaaaccatcc
     1321 gtcagcactc caatatcaga agtcgtgcca ccaacatcga gaaccatcgc gtctttaagt
     1381 cccgccaagt aggatgcgcc gcggatactg ttcgttggtc cacaagcaat tgtcaaaatc
     1441 gggaattgtc ttgcatagtt tagtgacatt aaagtcccgt cgttttggca aagatagatt
     1501 tcagcatgcg caattccttc ttgttctagt gctttttcaa aaccatcact cgttgccgca
     1561 ataactttga aaagggctgc gtttaaaatc gtcgcatttt cgcgttcaat cagtccaaca
     1621 gaacctacgg aagaggaaat cgaaaccgga atatctgcgc ctagttcttc ttcaataatt
     1681 ttttgaacag ctaattcctg atcgtttttc aaggaagaaa agacgccaac aactgcgacg
     1741 gattccactt cacctttcca actagctaag gtttcacgga tttctgcttc gttgatttct
     1801 gatagcacct gaccatcata ctcatagccg ccaccagtta atttatattt tccagataaa
     1861 aagccaacca tgtcttccgg ccaagctgta tatggtaaaa cggatgctgt tgcaggatag
     1921 cctaaacgaa gaacgccaac ttttgctaat tttttacgtt ccacaatcgc gttcgtacac
     1981 tgggttgttc caagcatggc gtgcgttact ttcgagcgat caatgcccgt ttcgctcaat
     2041 acgcgatgaa gtgactcagt aattcctgtt tcaatatctt cactcgttgg catttttaca
     2101 ctatgaatga gttgttgatt ttcatctaaa ataacggcat cggtgtttgt accaccaacg
     2161 tcaattccaa ttttatacat gacggcgttc ctcctttttg acaagttctt ctagtggttc
     2221 aaaattgaca tcatagccga aatagcgcgg tccaactgtt tcgatacctt tgtccgttct
     2281 ccaagcatca tcagctggta gtgccatcac gcggacacgt tttccgtatt tgagcgcttc
     2341 cgtcgttacc ggcatcagcg tttcaaggtc taccatacaa attaaatctg gtgtaattgc
     2401 tatcggttcg ccatttttct ccgcaacaag attttcgttt tggaaatgaa caatgacttc
     2461 gctacctgtg tctttgttta gtccgtcgat tttcacacga ccaaagttga agcctgcacg
     2521 cgtttcccga acaacatcgg taattttccc ttcgaataaa tgataaccgt gcgttacatc
     2581 taataatttt tgtagttttt ctgcttcgtc catcgaagtt tcgcggatta ctttaccgat
     2641 ttcttcagat agtgtcacga tatttttaat actactttgc ttaatttgcg caccgttaca
     2701 cggatacagg ctcacaagag aactcgcgcc catttcgacc gttgtcacac gtgcaagtcg
     2761 ttcggtccat ttattatcaa tcgtttccat gatgccaata ttaccttttt catcggtgat
     2821 agccattggt gttgcggaaa tcccgtctag atggaacgtc accatttgta gttctggaaa
     2881 agctcggccc atgccgtcac agtccaccat tggcaaacct agttgagccg ccacaacgat
     2941 tgggatcatt gagtttactc caccagcttc cattggaaat gttcctttta cttctttgcc
     3001 tacatatcta cctaattttt caaatacacg aacgaattcg tcgcctttag gaaatttttc
     3061 aatgagtaca gacggtgccc ccatcatcgc ggctggaatg aaataatcat catccgcaat
     3121 ttcttctggg gataacagtt taattggtcc atgtttttta attgcagtta atgccatcat
     3181 cttgcctata tatggatctc ctccgccacc agtgccaaga aacgcagcac caatcgcgat
     3241 attttcaata gcttgttcat ctaaataacg catttatttt ccctccaagt tttctacatt
     3301 gttggttttc ccgctcagca ctttcgctcc gatcaagtaa acagccagcg acaagataat
     3361 accgataagt ggttgatttg gtaattgtgg tagctccggg aaaaatgtca aaatgactgg
     3421 aatccccgca atgactgcac caactagcca agaacttaca cccagccagt tgacacctgg
     3481 tactggcgcc catttggatt tatctccttt ttggacaatc cagtaagaag caatcattac
     3541 tcctgcaacg ggtggtacca ttgctgaaag tacggacata attggaacaa agtggtttaa
     3601 aattccgata accgcgagta ttgttccaag tccgcctgca actgccactg ctactttgtg
     3661 atatttttca gagatgttaa atacattgat aatcgcaata cctcccgaaa aggcatttac
     3721 tgcgtttgtt gtccatgcag caagtatcaa gccgataata ccaagaactg gtaatcctaa
     3781 gtttgtaaat acgacagaaa tatctgctgt acccgccgta agtgcaagta ccgctccaac
     3841 cgtaatcata agcacacctg atggcaaaat cccgacaata gctgctttta caacatcttt
     3901 acgcgatttt gtatattgag aatagtctcc tgcaattact gcccctaacg caaatgagcc
     3961 aattgtaatt gctagtcctg tcataaacga catgcttcct gctggtttat aattttcaac
     4021 aatagctagt ccgccatcgt ttaaagaaac aacaagtccg taaatacata caaatagtaa
     4081 aactggtact gcgatataat ttaaaatact caaaatacga ataccataaa tagctgaaag
     4141 taacatgata actccccaaa ttaaggaaga aactggtact ggaagattaa ttccataaat
     4201 acctagaaac tgtgagaatg ctgcaccaca tacattggct tgaataccaa accatcctag
     4261 acaagcaatc gctaaaagaa tagatatgat ttttttcgac ccttgttctc caaaaacctg
     4321 tgaagctaca ctaactgctg gaatacctaa atcgctactt tgcattcctt gatatatcat
     4381 aaataagaca ataacgccgt atcctaaaag tgctattaaa attgcttccc aaagaggcat
     4441 acctgaaatt aaagttcctc caactagtag actcggtaca caaatcattg ctccggtcca
     4501 tacaaatgct aaactctgcc aggattgcgt ttgctccact gatttcttct ctgtcattat
     4561 gttccgcccc tttttcttga atttgttata ttaatgacta attatataag aactagctat
     4621 catttgtatt tatcagaatt gaaaaaaaat agcgcaatct ttgtcgtttt ggacaaaaaa
     4681 tgcactattt ttatttatta ttgttatttc caccaagaat ccgtcgaatc gccactgcta
     4741 aataaaggtt gtaggattct gggatttttg tcgccggata ttgcaataac tcatttatcc
     4801 gttgtattcg atatttaatc gtatttttat gcaggaatag tagttcagct gcttgattat
     4861 aattggattc accttccagt aaaaacacag acagcgtttc aattagttca tcattatcct
     4921 ctaaaggctt tagtggcctc atttgttctg caattgctag ttctcctcga tctactattt
     4981 ccacacattt tgctgcgaaa tcaatttctt gaagagaata aatggacttg ttcgcataaa
     5041 tcgcatttgc cgcattttta tattcattaa cgagcgaata agcgctttgc acatctgacg
     5101 tttgctccat tccttggcaa acggtaattt tcaagtctat cccatgttct ttcatcatca
     5161 tcgcaaactc attggctgta tgcgtccggt cccgctgcgc cactgaatta tcaagtaaaa
     5221 caacgatatt gtcttcaaat aaatcaatta atgaaacttg gaagtgacta gctacaaaac
     5281 ttttcagttc agctaaaact tgctcattgt cgcgaatttc ttcggttttt acaagccaca
     5341 tccatttaat agaagaaaca tccacattta aaatcttacc aagtcgccgc attttgacac
     5401 tttcatcatt taaaatggct ttcatcagtt cagctgtact gatttcgaca tagtttctgc
     5461 cccataaatt cataaatact tggactactt cggtaatttg catgactaca tcggctgtta
     5521 atacgccttt ttctttcatc ataaataagt gcatcgcttg cataccgtct tgaaaaatcg
     5581 gttttctggc cgtataaaaa tcgcgttcat ccaaggtaag ctgtacaagc tcatgttcac
     5641 cgatttgttt agatgcctca attatccgtt caaaatccca gtggcgcgtt cgtggccaag
     5701 tgatagaatt aattacttgg aaagaattat ccgttaagac gagcgaagta tgcgttctat
     5761 cagacaaaat tttcagtgtg gtatctatat ttcgttgtgg cggtcgcaca ctcgaaatct
     5821 gttctaatga ctcggttaca aagttggtat ctgtcatttc ttgcttcaca atcgcttcga
     5881 ctacttcata aatcacttcg ctatatctaa gtgacatctc gttttccggc atcacgataa
     5941 tggtaaaatc aagttcattt gcaaaatcaa tcagtttttg atccattttc ggcacaaaaa
     6001 ttcccacgta gtaaagaatt aaagcaactt cgccaacctt atgtaatcgc tcaattgtcc
     6061 gacactgtgc ctcaacatcg tcacgaatat tcacaaaagc cgatacaact atttcactgc
     6121 cataaaattc atcattatca aataaatcat cttctaaaag agctacctct gtatattcta
     6181 aaacagaaat agacgaaaca agcttagata atccagattt tccagagact actttcgctt
     6241 cttttaaaga tggtaatttc attaaatctg ccaattttac gctcaaagtt cgccacctcc
     6301 agttattcta agtgtaaaca atctcctaga aaaagtccat gccacgttaa atcttttaca
     6361 ttcaaggcct attatagtag cattgaacca tgaataaaca tattctgatt aaaaacataa
     6421 gaaaagaaac ggaggcaaat tatgtctata gagccatcca ttaaaataga agaaattatt
     6481 aatgaagttg aaaaagtaat cgtcggtaaa cgacatgttg ttaaattaag cttaactgcc
     6541 ctacttgcgg gtggtcacgt attattagaa gatgttcccg gtgttggtaa aacgatgatg
     6601 gtccgcaccc tttctaaaac aattggtgtt tcctttaaac gaattcaatt tacaccagat
     6661 ttacttcccg cagatgtgac gggggtttcg attttcaatc ctgaaacacg tgattttgaa
     6721 ttccgtccag gtcctgtcat gggaaatatt gttcttgcgg atgaaattaa tcgtactgcg
     6781 cctcgaactc aagccgcttt acttgaaggt atggctgaga atagtgtgac agtggatggt
     6841 attacgcgca aacttgctaa cccatttttc gttatggcga cgcaaaatcc gattgaatac
     6901 gaaggaacgt atgcccttcc agaagcacaa ttagaccgat ttttactcaa aattaatatt
     6961 ggttacccga cagtcgaaga agaaatgcag ctacttacat taaaacaata ccaagatcca
     7021 cttgatcaaa cgcagcaagt ggtgacgctc agcgaattac tggacctaaa aaacaaagca
     7081 aagcaagtct ttattgatga tgttttaaaa aattatatta ttcgcctagt tgatgcgact
     7141 cgaaaacacc cttccgttgc gctcggaatt agtccgcgtg gctcgctcgc tttcatgcaa
     7201 gccgctcaag cttttgcgct tattgaaggt cgagattatg tgattcctga tgatattcag
     7261 tatttagcac cgtatatttt cactcatcgt ctcattttga agtctgaagc ttattataat
     7321 gaggaaacag ccgaatccat tattgcttcc attttgaaaa acacgtcagt tccggtagaa
     7381 aagaggtagc taaatgttga aaaaacgcct cctattagca tttcggtgga ttattatgct
     7441 aattatttac gctgggcttt ggacttatac gttatttcaa ggtgatactg ctagctggtt
     7501 tttaacctat ttctttagtt ttatcctgtt acttttattt ttgtcctcga tttatccact
     7561 aaaagcgtgg aaagtgaatc ggcgttttgt taaaaatacc tatcatgatg gcgatttaat
     7621 tgatatgcaa gtatcattca ctcgaaaatc gcgttatccg gtgggttatt tgctattcca
     7681 acaaaaaata cccgctagtt ttggcaatgt gagcgcccgc caacaagtgg tttatccgct
     7741 ttttaaaaag catttcacgg ttacactagc tggatttgta ggcgttcgtg ggattcattc
     7801 atttccgcca gtggatgtag aaactagtga tgctttcggc ttgttagaac gttcgcgcca
     7861 actatcttcc gaaaaatcgc tcactattta tccaacctat tttccggatg tattagaaaa
     7921 aatcagtgaa gcttctccag aaaacgaacg caatgccgct tattggacgc ttaagaaaaa
     7981 cagcaatttg cacagtttgc gcgaattttc ttctggtgac cggatttctc ttattgactg
     8041 gaaatcttct gctaaaagcg accaactgat gactagagaa tttgaaaata gtgcaacatc
     8101 acggttatcc gtcatttttt acggagcgag ccatcccaat tttgaattat cacttcgggc
     8161 ggcttactcg tttattcgca aaatctccga agataatgga gaaattcgtg ttactctttt
     8221 aggcgatcaa acaagtaaat ttgctccggc gaaaggtacg agtaaacttc aagatatatc
     8281 gactgctttt gcagaaatcg ccccggtaga taatttaacg ctgcaagaat cgcttgatag
     8341 taatttacat tctggagaga aaatccttct attcacgcca tgtattgata cgatgttaat
     8401 gcaaaaagtg actcgtttaa cggataataa acagctccaa atcattactt ttcaatcaga
     8461 gcattctaaa tcgatggatg ctccagcgat tttccttgag ccagcaagtc ttctaagcag
     8521 atgggagcgt gaagctaaat gaaaagatat ttaacgctcg tcatgctatt tattctatct
     8581 gttttgctta tctctgagtg gatttatcca ttcgcagagc tgaccgaact ctctacagca
     8641 aactggatta ttttgtttat aaccctttca ctcggtagtt ttttcctccg tttgaaatat
     8701 tattggacaa tcccgcttca tatcgtgatg attatcttcg tttcaggaat ttactacgct
     8761 aaaggtggga ttttggcagg gaattggttt gtttcttttt tccaaatcac ctttaatggg
     8821 tttagagata tggtacagtt tcgctcgtcc gatatttcta tggactttat tttaatcgtt
     8881 tttttaattg ctttatggct tttgagttat attactactt atagtattct gcgcaaacag
     8941 cgggttatga gtgttttagt tttaactgtt gcttatttag cggttattaa tacttttaca
     9001 gattataaca gtaattgggc catcgtccga actgtattag aaggattttt attacttcat
     9061 cttgcactgg caagtcggat tgcagcacca aatagaatta gcgcggactc cttaaaacgt
     9121 aatggtttgt tttatcatat ttttgtgatt ttgttactgg ccgtatttgt ttttagttcg
     9181 ttaatgcttc cgaaaaaagc accgatcttc cctgatccgg taccgacgat aaaaaatgcg
     9241 cttggaatta atacaacgcg cacggtgggt tatagtgaag atgatacgac acttggtggt
     9301 gctctcaaaa aggataatgc tactgtattc acggcccggg cggaaaaagg gcattactgg
     9361 cgtgtagaat cgaaaacggt ctatactggc actggctggg caaatgcaaa ttccgcggat
     9421 gtcatatctt tttcttccgg tgataatttc cctattcaac tcacagaaca aacaactggt
     9481 gctacaaaca cggccgaaat tagctttgct tcttctaatg attacatgcc ttatccatat
     9541 ggaacgcaaa cagttaatgg cgcagtagat tcatttagtg ccaatttaac cattgagcgg
     9601 gttggaccag tggatacaat caaaaattat acggtccaat taaaaacacc cgtttataat
     9661 attgaaaaaa tgcagaatgc cgactttagc acactttcta atgcttttgt ttcccaatat
     9721 acccaaacac caaaagactt accagaccgg gtgacaaaac ttgccaataa agtaacaaaa
     9781 gacgctgatt caatttatga caaaacgaaa gcaatcgaac gctatttaag cgcttctggc
     9841 acctttactt atagtacaga ggatgcgaaa gaaacgccta ggggagccga ttatgtcgat
     9901 caatttttat ttgaaacgca aattgggtat tgtgacaatt tttctacttc catggtagtc
     9961 atgcttcgat cgcttgggat tccagcaaga tgggccaagg gctacacacc tggtgagggt
    10021 gagaaaaaag aaaatgatgc taaaacgact tatacaatca caaataacaa tgcacattct
    10081 tggccggaag tgtttttccc aggaactgga tgggttccat ttgagccaac agcaacattc
    10141 tccaatcccg aaaacttcca agaaccaaca actgaaacag ctaataaacc tgaaacacct
    10201 aatgatagta cgagtacgcc agaaacacca aatacagccg ataaaacacc agaacaagat
    10261 aacggtagca gctccacagg tgaaacaccg aaaaaagaag aacctaaaac agaaacagcg
    10321 gcctctaatt tcgaaattcc gtcttgggtt tggtggattc ctgctggact agttgtgaca
    10381 ctgctcgcac tagctattat attcagacgt agaattcgta gatatttatt gcttcgttct
    10441 ctgagaaata gtccagaatt tggcaaaacc tatcatagac ttatgaaatt acttgcttct
    10501 tatggttatg tccgcgaatc gagtgaaacg ttacgtcatt ttagcaccag agtggatgct
    10561 gaattaacaa cgacagaatt ttcgcgacta acgaaaatgt atgaagccca aatttatagt
    10621 aataacttaa cggaaaaagt gataactgcg gaagaaacgc agcttgtgca acaagttata
    10681 gctcgattaa ctaaataaac agagaaaaag cgcctaagaa aatattcatg gcgctttttc
    10741 ttatgtaata tttttatctt ttcttcgtaa atatgcgata atgttaacat gaataaaata
    10801 aaggagactt gaaaatgaca actattttcc caaaagaaca aaatgtcgct ccccttttcg
    10861 aacagatatt ggctaatcca acagcttgca gacgttttaa agatgtattt ctagataatt
    10921 tagagagcta ccaagagacg cgtggttttg aaaaagatga tactcttttt gctaaaatta
    10981 ttttgtcggc ttataggcaa agtgatgtaa gtgccttgtt gttaggtgtt tgcgggagaa
    11041 cattattcga acttctcaga caagctttcc ttattcctaa aaaattaaca gtggataacc
    11101 cgttcttttt aacagataaa gaaggtaatt ttatagccaa gaaggacgat atttctaacc
    11161 gcgaacagga gaaatttcaa gagatttatc aatcggattt gcatcattct gaaacaacga
    11221 ttttcttagt agatgatgat gatatcgttc attcctacga gccagatttt tcgatttcca
    11281 ccaaacgaat caataaaaaa agagggattt tggtactgta ctctcttcct gatactttaa
    11341 aattaggaat gactgagtcg gaagtctatg cgtttatttg gaaaactttc ttgcatatac
    11401 aggaaatcat tccatccagc cgaattttct acggacaaga aacatcagaa aatgcagatg
    11461 aacttggcgt atttcttcca attcaccatt ttgagaaaaa aatgctgcaa aatattgagc
    11521 aagttaatga gctagttgat gctcttcgtg aacaaatggt taataaataa gaaaaaaagg
    11581 atgaaaaatc atggcaagat ctagacaaat ttcagaatca atcggtttgg ggcttttact
    11641 tgctctggct ggcggattta tggatgctta ctcttacatt gaaagaggtc aggtattcgc
    11701 taatgcgcag actgggaaca tacttttatt tggaattaat atttcggagg ggaactgggc
    11761 tatcgcaatt cagtattttt ggccggttgt ctcttttacg gtcggaattg cgatatctga
    11821 agtgattcat cggcgtgata ttaggcgtct tcactggcgc cagctttctg tcttgatcga
    11881 agcggtaatt ttgattgggg tcgcatttat tccacttgat cataatctga ttgccaattc
    11941 gctcatatct tttgtatgtg gtattcaggt agaaagcttc cgaaaaatgc atggtagagg
    12001 ggttgcgacg acgatgtgca tagggaattt gcggagcgct acccaaaact tatgtgatta
    12061 tttcgagtac aaggaaaaac aatatttgcg taacagcttg ctatatttta ccgttattct
    12121 tagttttatc attggtgcgg ttgtagggaa tttctttatt cagttattcg cacaatatgc
    12181 tattctcgtt tgtgcatttt tacagtttat cgcctttatg atgatgttta ttgatagaga
    12241 aagtaaaata atataaaaaa actgccaaca aaatgatttc tcactttgtt ggcagttttt
    12301 tattttactt cttcatctac ttttttaaat tcgaagttct tcatccattt tttatttttg
    12361 cgaatggaga agtagccgat gatggatatc acgaaagccc cgaggaaatc gacgaacaga
    12421 tcgcccattg tatcagcaac tgctgcatga ccttgaagca tcgtgccatc ttctagcatt
    12481 gttttttgca tgttcattcc aaagctatcg gctgcaaatt catagaactc ccagaaaaca
    12541 cccaagaaaa cagcaaagct acaagcaaat aatgcaacga aaaccggact catcgaaaga
    12601 gtaatccgtt catcattatt cagtaagctc acaatagaaa aaccaagtcc cccaagcatt
    12661 gccccactaa acgtatgtag aatcgtatcc cagttaggaa ttaaataata gaaactacga
    12721 acttcgccaa gataaatggc acaatataag aaaacgataa aaacaatata catcgcattc
    12781 ggaatgacga atttcatttt tttactaatg atggatggta agaatagaac taccacgcca
    12841 agtacacact gcataagcat aagtgagtag tcgccctttg tttgttgtcc ttctggaaca
    12901 ttaccagatg gcgctgtaat taagttaact gttgcataaa ccatcgaaac tacgagcgtt
    12961 actaatacaa aaatagccaa aatctgtgcc cagttccatt ttcttttctt tgttttgtcc
    13021 ttcatgaagc gtctcacccc tttttaaaat atgtattcat tataatctat gtgaagcgaa
    13081 aaaagaaatt taaaaccagc ttgccgcttc ttcataacgc ttttgtgaca atttcctgtc
    13141 taaaatcagc tatattttgc gtttctcaca catatacttt aataccgctt taccatgatt
    13201 tttaattttg ttacactaaa cacatactat atgaatcttt taactggagg aaaatcaaat
    13261 gaaaaaagta tcatctttat taacccaaga tcagttttgg ggaattattg ataactctga
    13321 caaaggcagc aaattagaag aactactaga aaagttgagt gaggatgaac tttttggtta
    13381 tgattattgg tggaactact ttcataaaaa atcttataac caatcgctct gggctgttgc
    13441 ttacgtagta ttaggtggct gtagtgatga tggatttgac tatttccgtt attggttaat
    13501 aacaagaggt aaggctgtat tcacatctgc tgtggaaaat gccgatacgc tttgcggtga
    13561 atttgattta ttaacagagg atgaatatcc tgaaaatgaa gaggtagctt acttagtgat
    13621 ggatattttc gagaacaaac tagggaaaga ctttgacgat gctgaaaatg aagcagagag
    13681 tagaattgag tttgaagaag tatctatgcc tccaatagat tttgagtggg atgaagacga
    13741 cgaagattct atcaaaaaag tatgcccaaa cacttttgca aaatggtgga ataacgacaa
    13801 attctaatat aaaaacacgg aaatcctatt aatgaggact tccgtgtttt tttgttattt
    13861 caaaaaatct tgtaaagctt ttgcgttagc agccatatca tctaaacgaa gcactgctcc
    13921 cgctccatca attcgctcat tgtgccattt cccttcaaca ggaatcgcga atttttccat
    13981 tgtttctgtt tttcctagta ggaaatctgc gccaatggac attaatgttc ctgttgggat
    14041 attagtggaa gaataacctt gtagttttcc gataacatca gggatttttg ccacgtcacc
    14101 aacatcaatc gcctgttctt tcaaagcttc taatacttgt tgttgacgac gaattcgacc
    14161 gaagtctcct tctgcatctt tacggaagcg agcatattgt aacaatgttt taccatccat
    14221 tacttgttcg ccttttttaa tgtttgcgtc aatatttttc gacatatctt tctctgcgtt
    14281 gattttgatt ccttctggtg caagtgtatc aacaatctta gggaaacctt caaaattggc
    14341 tactacataa tattgtacgt ctactccaaa attttcttta atcgtttggc gtacaagttc
    14401 tggtccgccg tatgaatatg ctgcattgat tttgtttttg ccgtgtcctg gaatatctac
    14461 gtatgtatca cgcatgatcg ataccagttt tggcgtattt gttttcgtat tataatgagc
    14521 aatcatcaag ctgtctgaac ggccttggtc ttcaccgcga gagtcactac cgataagtag
    14581 tacattgatt tcatcgccaa ctgccttggc accattgaat ttgtagtctt ttaatttact
    14641 ttcattttgc gcttctttta agctagattg atattggaaa taacctataa ctgcaactac
    14701 accaactaaa attaataggg ctacaagaat cgtaacaaaa attctacctt tgcgcgcttt
    14761 tcttttttgt gcatgtcttg ccatatttca cacctctttt attgtaactt acttccatat
    14821 tacaataaaa tgacaaaaaa taggagcgat aattccataa gattttttaa agattggaaa
    14881 aagcccccta aaatgatgat ttctagaggg ctcgcaaata ttaaagggtt ccgtcgctgc
    14941 ttgtagtact atcacttgtt ccagagtcag aactatcatc tgaactattt ggcgcttggc
    15001 caggttcacc ggacggcggc gttccactcg gcatctcccc tccaccagga ccttgcatgg
    15061 ttccattagt attattttcc ggggtatttt gactaactga atacagctga taacttaaaa
    15121 cactaataat tatgacagaa agaatactga caataatcgt gctccacttc catttattgt
    15181 ggatgccttt cccacgaata atgaccttct tttctggttg ttccatctct tccatccaac
    15241 atcatccttt cgttaccact actttaccaa gcaaataaga acaaattatg acatgaatta
    15301 gaaaaaaata tgtcgggcaa atctaaagtt ttctttaatt ttttcaactt ttttagaagt
    15361 gtttggtata attaattgaa tataacatga aattaagggg tgtattatgg ctagttatgg
    15421 tgggaaaaag aggaataaca aaaaagcaat tatcattgga agcattgccg ctgttgtcgt
    15481 cctcgcaggc attgccattt actttttcat tcaaaatcaa cacaaagatg aaaaaaatgc
    15541 tttagcagcc gcagaaactt ttacatcaaa tatcgctaaa gaaaagtacg acaagttggg
    15601 aagtagcgtc tcaagtgaat ccctgaaaaa agtcgaattt acaaagaaag aaatggaaga
    15661 taagtatcaa gctgtttacg acgggattgg cgcaaaagat attaaagtaa aaaatctaaa
    15721 atctgtctat gatgacaaag aaaacaaatt caacttaaca tacgaactag aaatgcggac
    15781 tagcctcggg aaactcgcta cacaaaaata caaaacgact atttccaagc aagatgatga
    15841 ctggaaaatc gactggaaac cagctctcat tttccccgga atggtgaaaa cagataaggt
    15901 gcgcatcacg gaagacgaag cagagcgtgg tcaaatagtg gacagaaatg gtaatccact
    15961 cgcgactact ggtcaatttg ccgaagctgg tgtagtgcct tcgaagcttg gtgaaggcga
    16021 cgagaaagtg aaaaacattg cggatattag caaaaaacta gaagtctcca ctgattacat
    16081 caacaaacag ctcgatcaaa aatgggtcca agcagatagc ttcgttcctt tagttacatt
    16141 gaataaagat aatctacctg aggctactgg acttacgtat gctcaaaaag aaatgcggac
    16201 gtacccatta aatgaagcaa cctcgcattt gattggttat gtcggtgaag ttagcgccga
    16261 agacattgaa aaaaatccaa aactcagcgt tggcgatgtc attgggaaaa gtggcttaga
    16321 acgttactat gacaaacaac tgcgcggtaa aaatggtggc gcaattaaaa tcatcaatga
    16381 ccaaaccaag caagaagata ctttacaaaa aatcgataaa aaagatggcg aagaaattaa
    16441 actaacgatt gatgcagccg ttcagaagaa agcttttgat agcctcggtt ccgaaactgg
    16501 tgctgtgacc atgattaatc cgacaaatgg cgaactatta gcgttagtga gcaccccttc
    16561 ttatgatgcc aaccaaatgg tgctcgggat cacttccgaa gattacgcaa aatataatga
    16621 cgacaaacgc ctacctttcc tagcaagata cgcaaatcgt tacgcaccag gctctacctt
    16681 taaaacaatt acagccacaa ttgggctgga cactggtatt acaaaacctg ataaagtccg
    16741 tgaaatttct ggcttacagt ggcaaaaaga tgcttcatgg ggcaagtatt ttgtcactcg
    16801 tgtccatgat gttccaaaag taaatatgac ggatgcgctt gtgcactctg ataacattta
    16861 cttcgctcaa gaaggtctag aaatcggcaa agataaacta actgctggct tgaaaaaatt
    16921 cgattttgat aaggaatata acttaccttt cacaatgaaa ccagcacaaa tttcgaatga
    16981 tgggctgaac tcggaaatat tactagctga cacatcttac ggacaaggtg aattactgat
    17041 gtcgccaatt caacaagcga ttgcatactc ggccattgca agcgacggaa aaatgcctta
    17101 tccaaaacta gatacaaaag aaaaagctgg caaggaaaca caagcaaccg aagccgcttc
    17161 tgccaaccaa gtcaaagcag ctttagtcaa aactgtttct gatccagctg gtacagcaca
    17221 cgccctacaa atccaaggtc atagtatcgc agccaaaacc ggtacagccg aactaaaaga
    17281 aaaacaaggc gaagatggcc ttgaaaatgg ttttgtttac gccttcgatg ccgacaatcc
    17341 caattacctc atggtaggaa tgattgaaaa cgtcaaaggt cgcggtggta gcggacttgt
    17401 aattgataag ctaaaaccag ttattgaaag tatgtataaa taaaaaagag ccattctgtt
    17461 cgcgaacaga atggctcttt tttgttaact ttcatgggtt aattcagtaa tttctccttt
    17521 tgtattaaaa cgaacaacta aaagttcatc gctaacttct ggtaatagtt tgaaatcgaa
    17581 tgttaaatcc aactcattat tggcattttc cgaaaaccaa acgcctgaca aaactagttt
    17641 atcgattaag atttcctttg ttatattttc tagcgcatca cattcggtaa cttctaaaac
    17701 cgcttcgggc aattcatctg tatgaaaatt aaaataaata gtaagcgtat catttccatc
    17761 aaattgctct aaaatagttt tttcgcttct aggtgtagtt ccggaatttg atccgttaaa
    17821 gtaacgatat ctttaaaata atcttctgaa gtaagctttt caaaaatact ataatcaacc
    17881 tttacttctt tgccatccaa aggaattacg gcgtccatca tcgttccatt ttcttgcgta
    17941 tagcttagtg ttcctagtaa cttggttgtt aatgttctgt ttgtcatgtt cggtgcctcc
    18001 tagaaatagt agcttgcata cgctcagtat aacttaaact cactttgatc cgcaacttgt
    18061 ttcgcagcac tgctttcagg gaaactatta acaactattt aaaccgaaga aagaaggaag
    18121 tcccatggta aaaatcacga gttatcccgc tgaaccttct gatgttaaac attatatttc
    18181 tggagaaaaa atgaaaaatg accaccattt gcatacggta cttacgtttg ataatcattt
    18241 aaatatagac gttctaaaaa aagcagtgat gcagtctact aaaaaacttc cgctattact
    18301 ttgtcatttt aaagaaacga aaaaaggtgc tttttggcaa gaaagtgttt tttctgcgga
    18361 ggatttggtt ttcttagtgg aaacgcaagc gccagaaacc gaagtggacc gagcacttgt
    18421 aacgaagctt tccacagaaa atgggccgca aatttgcttt actgttgttc gggctgatac
    18481 ttctgatcag cttgtggtta ttatgaatca tatgttagca gatggcgctg gatttaagga
    18541 atatctttat ttattgagtg agctttattc taatctgctt gaaaatccgg attatgcggc
    18601 gaatttgagc ttaggttccc ggagtttaaa gcaaattttt gatcaacttt cgcgtaaaga
    18661 tataaagtcc atttttacgg aaaaaacgaa gcaaaaagct gtccataacc caactttccc
    18721 tcttaaaggt gacccgaaaa atccgaaagt tatttggact aagctaccaa aagaggattt
    18781 ttcggaaatc atccactttg caaaagagca cgaggcaact gtgaatgatg ttctgttcgc
    18841 cgcaatggcg cgcactgttc agcaaacaac agggcaacaa gaaatgtcaa ttgattgccc
    18901 ggtggatctc cgtaagtatt tgccgagtaa gaccagtagc ggaattacca atctcaccgc
    18961 caatattaca tgccaaatca gcgcagacga tgacctaacg tcatttgaaa gtacactcca
    19021 agccgtcaaa aattcactca atccacaaaa aaacagcttt gcacctctac gaatttatta
    19081 tttattggaa ctgattttca agaaaaagaa ctactctgtt gcaaaaaaag cttctgaaaa
    19141 aatgtattct attccgaaaa caagttttac gaatataggt attatcgatg aggaaaaact
    19201 cgtttttgaa ggtagcactt taacagattg ttttatttgt ggttctttaa agtatgcgcc
    19261 gtttttccaa gtcgctgcta caactttccg cggcgagctg acactgagta ctaatttgca
    19321 tggtactacg caagatcatg cttggcagaa agactttttg gagcagatga tttcggaatt
    19381 tccttctaaa taagaaaaag ctatcctcag caggatggct ttttcttatt tctgactatc
    19441 caataattcg tagcctactt tcaagttatt taaggctgtt tgtaatttat tcgtgcgcac
    19501 ttttttaaag ataatttgat ttggatatga ttttttaaat gcagcttcac tatctttttt
    19561 accatttagt aaatcgatag ttacttgtat ccgctctatt ttgaaatcac tccattcttt
    19621 gaaaaccttt ttaaatgcct ccgtatccgc cgaggcttct gaacttcttt taaccgcatc
    19681 tatatttaaa atttcttgct gatatcgttt catcgtgcca atcatttggt taatattatc
    19741 attcgcaaaa tccaaatccg accaactttc ttctttaatt gtatctttca aaattttttc
    19801 tgaagaaagt tcccgacctt caaattctgc taaatcagct ttaatcaagg ctaaatcttt
    19861 ggttgaaagc ttgggcttgc tcgtcgtttt tacaatttta tcgctgttag tttttgtctt
    19921 cgtttgttca ccttcattct ctcctgttgt taaggctatt ataactacaa aaactgcgcc
    19981 tattattact accactttcc acatttttga taatccgtta aaccaagcaa ctaacttctt
    20041 cactcgtttt ccttctttca tttaataaat aaagagcata taaaattata gcctcattct
    20101 tatcaaatgt ttaaaaggtc gtataaatac tactgaaaag ataataaaat gcgcagtaaa
    20161 aaaacagcct acctcaaatc aaggtaggct gtcccttttt atttcaacaa ttcccgaagt
    20221 gcatctacgc gattcgttaa tggttttcct aatgcttttt caaaatcatc agaagtaaca
    20281 tctaattggt cgttcttaat gtcgtgttgg aaggataaga acatttctgc gacaggttgt
    20341 ggtaaaccgg cagaaactaa attttctaca aatcctttat catctgaaga aataacgtcg
    20401 aaatcttttc cagttgcttc ttttaatgct tttgtaagtt cttcgtatgt catgagtggg
    20461 ccagataatt caaggatttc tgggaagtca gcgcccgcaa cagcttttgc ggctacttct
    20521 gcgtattcgc gttttaatgc ccagccaact tttccatttt cagcagcgta tacaaatttt
    20581 ccagcactta atgcgccacc aatcattggc atttcatttt cgaagtacca gttgttacgc
    20641 aagaaagtgt gcgcgattcc ggatttttcg attacttttt cggtaaagaa atgatcttct
    20701 gctaaagcgc ttgtggattt atctgcgcct gcaaaacttg tgtaagcaat gtaagaaaca
    20761 cctgctgctt ttgccgcatt taccacgttt tcgtgttcta cttggcgatt accaggagcg
    20821 cccgatacaa ataatacacg gtcgattcct acgaatgctt gcttcattga ttctgcatca
    20881 ctataatcac caactcggat gttaaatcct gctgctttca agtctgcacc tttttcttcg
    20941 ctacgaacta aagcataaat atcggacatt ggaacgagct ctttcaaata atttaatgcg
    21001 tagcctccaa gtccacctgt tgcacctgtt actaaataag tcatttaaac cactccttca
    21061 aattttttta atattaaagc tgtacattta taatttacac ctttataata aacattatga
    21121 taagataagt caagaagaaa atttgaaagg attgaaaaaa atgaaatact ctatccaatt
    21181 tagtgatgct atccacattt tggcttatat agaaattttt aaaaatacga atttgttatc
    21241 gagtgaaatt att
//
LOCUS       DASEAA010000033        21063 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.033, whole genome shotgun sequence.
ACCESSION   DASEAA010000033 DASEAA010000000
VERSION     DASEAA010000033.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 21063)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 21063)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..21063
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.033"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            3..1217
                     /locus_tag="U0342_001030"
     CDS             3..1217
                     /locus_tag="U0342_001030"
                     /EC_number="6.3.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate synthase"
                     /protein_id="HEM2422384.1"
                     /translation="MAKEKIVLAYSGGLDTSVAIQWLVESGYEVIACCLDVGEGKNLD
                     FIKEKAITVGASESYTIDAKEEFAEDFALIALQAHAYYEGKYPLISALSRPLIAKKLV
                     EVARQEGASAIAHGCTGKGNDQVRFEVAIHALAPDLKVVSPVRDWKWSREEEINYAKE
                     HNIPVPIDLDNPFSIDQNLWGRSNECGVLENPWTTPPEAAYDLTVSLEDAPDTPDIVE
                     ITFDAGIPISLNGENMSLANLILTLNEIAGKHGVGRIDHIENRLVGIKSREVYECPAA
                     VTLITAHKELEDLTFVREVAHFKPIIEQKISETIYNGLWFSPLTEALVAFLKSTQKFV
                     NGTIRVKLFKGHAIVEGRKSPNSLYDENLATYTSSDTFDQDAAVGFIKLWGLPTKVSA
                     EVNSKVTITTEV"
     gene            1221..2591
                     /gene="argH"
                     /locus_tag="U0342_001031"
     CDS             1221..2591
                     /gene="argH"
                     /locus_tag="U0342_001031"
                     /EC_number="4.3.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465615.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="argininosuccinate lyase"
                     /protein_id="HEM2422385.1"
                     /translation="MEKLWGGRFQGKSEAWIDDFGASISFDQKMAKEDLAGSLAHVAM
                     LSKCGIIPASEAAEITAGLKILQEKLALGELEFSTVNEDIHLNIEKLLHEEIGPVAGK
                     LHTARSRNDQVATDMHLYLKQAVAEIIQSLKHLRVVLVQKAEANVETIMPGYTHLQHA
                     QPISFAHHLLAYFGMFTRDLERLEESVKRIDISPLGSAALAGTTFPIDRAYSAELLGF
                     SAIYENSLDGVSDRDFIIEFLSNSSILMMHLSRFCEELILWTSHEFQFVELTDAFSTG
                     SSIMPQKKNPDMAELIRGKTGRVYGNLFGMLTVLKGLPLAYNKDLQEDKEGMFDTLET
                     VQTSLDIFAGMIETMKINTEIMEESTQKDFSNATELADYLAKKGVPFREAHEIVGKLV
                     LECTQNGIYLQDVALSHYQEINPLIDDDIYVVLSSKTAVQKRNSYGGTGFDQIKVALE
                     NAKKTL"
     gene            2759..4282
                     /gene="betL"
                     /locus_tag="U0342_001032"
     CDS             2759..4282
                     /gene="betL"
                     /locus_tag="U0342_001032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465616.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BCCT family glycine betaine transporter BetL"
                     /protein_id="HEM2422386.1"
                     /translation="MKKLTSVFWGSGCLVLLAVLFGAFLPKQFEAFTTNIQKFLTSNF
                     GWYYLIVVAIIIIFCLFLVLSPIGSIRLGKPGEEPGYSNKSWFAMLFSAGMGIGLVFW
                     GAAEPLSHYAVQAPGGEVGTQAAMKDALRYSFFHWGISAWSIYAIVALALAYFKFRKN
                     APGLISATLYPILGKHAKGPIGQLIDIIAVFATVIGVATTLGLGAQQINGGLTYLFGV
                     PNNFTVQFTIIIIVTILFMLSAMSGLDKGIQLLSNVNIYVAGVLLVLTLILGPTLFIM
                     NNFTNSFGDYLQNIIQMSFQTAPDAPDARKWIDSWTIFYWAWWLSWSPFVGIFIARIS
                     RGRTIRQFLLGVIVLPALVSVFWFAVFGGSAIFVEQHGNSGLSSLATEQVLFGVFNEF
                     PAGMVLSIVAMILIAVFFITSADSATFVLGMQTTGGSLNPPNSVKVTWGLLQAGIASV
                     LLYAGGLTALQNASIIAAFPFSIVIILMIVSLFVSLTREQEKLGLYVRPKKSQRSQL"
     gene            complement(4326..4523)
                     /locus_tag="U0342_001033"
     CDS             complement(4326..4523)
                     /locus_tag="U0342_001033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422387.1"
                     /translation="MEKFLFNATLFASALLLMVGIFKSSIPITAISLVLAVVSQHFFR
                     KKYPKQTRSYREIVAAKQKKG"
     gene            complement(4527..5177)
                     /locus_tag="U0342_001034"
     CDS             complement(4527..5177)
                     /locus_tag="U0342_001034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II aldolase/adducin family protein"
                     /protein_id="HEM2422388.1"
                     /translation="MLYQKEREDLAKIVKTMFDRFETNAAGGNVSVRMNSEHIIMTPT
                     LMSQAKLCDLSPYEILVVDNNNEVVEGDGRVTREINLHRACYVENPKIGCVLHAHPKE
                     SMLFATLGMELPNLTEATQKIGQIPTLEFAPATSPELAEIVRKHVIELGDKAVPSASL
                     LNKHGIVVLDTSLHKAYDMLERIEYNAYIAEKALVFDALGIKKLAHDRELNYNLEE"
     gene            complement(5179..6111)
                     /locus_tag="U0342_001035"
     CDS             complement(5179..6111)
                     /locus_tag="U0342_001035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase family hexose kinase"
                     /protein_id="HEM2422389.1"
                     /translation="MIYTITLNPAIDRLLFIQGELEKRKTNRVKKTEFDCGGKGLHVS
                     GVLSKFGIKNEALGIAGSDNLDKLYAILKEKHINHDFLVEAGTSTRECFVVLSDDTNG
                     STMIPEAGFTVSQTNKDNLLKQIAKKVKKEDMVVIAGSPPPHYTLSDFKELLRTVKAT
                     GAFLGCDNSGEYLNLAVEMGVDFIKPNEDEVIAILDETTNSLEENVRKLAGKIPYLVV
                     SLGAKGSLCAHNGKLYQVIPPKVQERNDTGAGDVFVGAFIAGLAMNMPITETLKVATG
                     CSASKVMQQDSSSFDLEAAGKLKNQVSIIQLEER"
     gene            complement(6129..7478)
                     /locus_tag="U0342_001036"
     CDS             complement(6129..7478)
                     /locus_tag="U0342_001036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HEM2422390.1"
                     /translation="MESLQSVIQFILNLGAAVFVPALMIIIGLIVRMKVRDAVSAGII
                     LGVAFLGMNIVIGFMIEALTPAAQGLAERTGINLSILDGGWTSMATLAWAWPFAFLMF
                     PLQLGINAIMLVINKTKTLNVDLWNVWGKILTAVLIIGVTQNVYLAFIVAGIQIVTEL
                     ILCDANQRQIQELNGIPGVTVSHGMMIFCIFLMPLDWLLKKIPALRKDMDANALKDKI
                     GIFAENHVMGFIIGGLLGIAAGYDVAKTLMLAMQAAAALTLFPMVAKLFMQALSPLSD
                     GISEFMKRKFKNRELFIGLDWPILAGCSEVWVAIVLMVPVTLIFALILPGNGVLPFAG
                     ILNISLCAPALIVTGGNLIRMIILGTITTPIFLYVSTFFAGTITDLAHSTGAISLKAG
                     QQITWSTLEYPVFRYIFAEASQFTILGFIFVAIWVVLLVFYVKMMKKRTIELEKASS"
     gene            complement(7506..7781)
                     /locus_tag="U0342_001037"
     CDS             complement(7506..7781)
                     /locus_tag="U0342_001037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2422391.1"
                     /translation="MKKVIVACGSGVATSQTVASKVERILKEKGVRATVEAVDIKSLE
                     QHIKTSDVYVAITKANKEFDIPTLNGIAFLTGMGMDEETEKLLNALK"
     gene            complement(7787..8254)
                     /locus_tag="U0342_001038"
     CDS             complement(7787..8254)
                     /locus_tag="U0342_001038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2422392.1"
                     /translation="MDYHDLFQKELTLINSRYENQAELFEYTSKILEKEQYVEPTFRE
                     AVTSREVVFPTGLEMNGIKIAIPHTDTIYVKRPFVLVNKLSTPIPFIQMGTTDKWIDV
                     EVIFMLGIKNPQDQVPLLSSIMEKFMEADFVEQIKTINDSNTLCDFLKKQFGE"
     gene            complement(8262..10268)
                     /locus_tag="U0342_001039"
     CDS             complement(8262..10268)
                     /locus_tag="U0342_001039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2422393.1"
                     /translation="MEQNCKELITYLLLNRQVNLRNVSKNFKVSKEAISAQITQINHL
                     LKSEPILIDHDMIFVTDVCREACYRLLTAEEQQLFSFYEVNIRRKLIMIKLLLHNHYM
                     SLGALADYVYVSKNTMLTDVKSIKESLHEFEIQLDYSRRDGYAVSGSEFLIRNLLAEL
                     IREVVQTPYGKFVLDEKKLITVSEVFLLKKRLEKVESKLQITFTDEQMEELPYILHGI
                     IKRSKVTNKKWTFKIEMYDIKNTREFPIMKEMFWGYDFLSENDLLYLSLQVLASNLVE
                     SALHFSDSEEIAYAVDEFIRLLEMYFATEIMKKNEFKEKVILHVRPAIYRTILGFQIN
                     NPLKKQFIKEYTPTFNIVEKASKPFEKLVGHKWSEEEIVYLSMIVLGWMYQIEETEQP
                     IFRAVVLCKSGTSISKLLLENLKMMFPNIDFQGAYAVRQLSTVARDIDFIFTTVPVQS
                     DATIFVIPSILSKDSRQILREQVDKAIEMDSHKKTKELLAMLKDEIPEENIRLVQAKM
                     ESFFNKKEQPMEKKEPEQMQITEEQVHFLETPLEWEQLVSVAFAPMLERGTVDASYIH
                     TCEEIFYQNYEQMMIGPNIYLPHAKPANGVIEQDIQLMIMKADTKTPENEAVKIMIAL
                     APSEQNKHIPLLLKLNEIFLKPEKLAGILASTNKKKIVEILERG"
     gene            complement(10449..11894)
                     /locus_tag="U0342_001040"
     CDS             complement(10449..11894)
                     /locus_tag="U0342_001040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent aminotransferase family protein"
                     /protein_id="HEM2422394.1"
                     /translation="MWKLAGNSNLPIYLQIVDLIETKIINGELLPEEKLPPERQLAEM
                     FGVNRSTVVRALDELTARAVIIRKQGSGTTVNAEKWGLFAGQSTNWRHYLTQGGFTPA
                     VPYIRQAGVMERADSDQVIDAASGELPLEMTPKMETPSLSWQSFIAEEQQEDEAGYKP
                     LRETIQKQMKEAYGLQTRPEQIFITSGAQQALFLITQCLLKPGDAVAIESPSYFYSLS
                     LFQSAGLRIFALPMDEDGVIISELRDLYHKHRVKMVFVNPTFQNPTGLVMSLERRKEL
                     VKICAHLQIPIVEDDPFSELAALDSQVPAPLKQLDTDNVLYIGSLSKIMGSTTRIGWL
                     IGPTAVIERLALARQEMDFGLSIFPQVLANSVLNTPGYKVHLQQLHHVLKQRRDDLIE
                     AFEAILPNDVVFIKPKGGFHLWVKLPVEFRSIRDFDIFLANDLLVMPGFLFGVKEAVI
                     RVTYARLEKTEARRIAEIIKQILIEKKCEEA"
     gene            12018..12905
                     /gene="pdxS"
                     /locus_tag="U0342_001041"
     CDS             12018..12905
                     /gene="pdxS"
                     /locus_tag="U0342_001041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase lyase subunit
                     PdxS"
                     /protein_id="HEM2422395.1"
                     /translation="MEKKVGTDRVKRGMAQMQKGGVIMDVVNAEQAKIAEEAGAVAVM
                     ALERVPSDIRAAGGVARMADPRIVEEVMNAVSIPVMAKARIGHITEARVLEAMGVDYI
                     DESEVLTPADDEFHLLKSDFTVPFVCGCRDIGEALRRIGEGAAMLRTKGEPGTGNIVE
                     AVRHMRQVNGQIRQIAGMTDDELMVAAKNFGAPYELIKEIKTLGKLPVVNFAAGGVAT
                     PADAALMMELGADGVFVGSGIFKSDNPAKFASAIVQATTYYTDYELIGKLSKELGSPM
                     KGIEMSRLNPEDRMQDRSI"
     gene            12907..13473
                     /gene="pdxT"
                     /locus_tag="U0342_001042"
     CDS             12907..13473
                     /gene="pdxT"
                     /locus_tag="U0342_001042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465626.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal 5'-phosphate synthase glutaminase
                     subunit PdxT"
                     /protein_id="HEM2422396.1"
                     /translation="MKKIGVLAIQGAVDEHIQMIESAGALAFKVKHSSDLDGLDGLVL
                     PGGESTTMRKIMKRYDLMEPIRAFASEGKAIFGTCAGLVLLSKEIEGGEESLGLIEAT
                     AIRNGFGRQKESFEAELNIEAFGEPAFEAIFIRAPYLIEPSNEVAVLATVENRIVAAK
                     QANILVTAFHPELTNDNRWMNYFLEKMV"
     gene            complement(13512..14489)
                     /gene="pta"
                     /locus_tag="U0342_001043"
     CDS             complement(13512..14489)
                     /gene="pta"
                     /locus_tag="U0342_001043"
                     /EC_number="2.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM2422397.1"
                     /translation="MSDLFTTIKGQVTGKNVRIVLPEGTDERIVGAAARLQKENIVKP
                     ILLGNKAEIEAKAKEIGVSVEGIAIHEPATDPLFDELVAAFVERRKGKATEEAARKML
                     VDPNYFGTMLVYTGKAEGLVSGAAHSTGDTVRPALQIIKTKPGVSKVAGAMIMVRGEE
                     RYLFSDVAINIAPVAADLAENAIVSAETAEIFGIDPRVAMLSFSTKGSAKSDETEKVV
                     EATALAKEKAPELTLDGEFQFDAAFVPTVAEKKAPGSVIKGDANVFIFPSLEAGNIGY
                     KIAQRLGNFEAVGPILQGLNAPVNDLSRGCNTDDVYNLTLITAAQAVNK"
     gene            14809..15036
                     /locus_tag="U0342_001044"
     CDS             14809..15036
                     /locus_tag="U0342_001044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein A"
                     /protein_id="HEM2422398.1"
                     /translation="MQLNETAVGEKVRISELKIENAMLKRRLLALGCDEGCDICIKQK
                     GLFGGPCTFETKGQYISIRQCDACAIMVERR"
     gene            15033..17027
                     /gene="feoB"
                     /locus_tag="U0342_001045"
     CDS             15033..17027
                     /gene="feoB"
                     /locus_tag="U0342_001045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrous iron transport protein B"
                     /protein_id="HEM2422399.1"
                     /translation="MSQNTYCLLGNPNTGKTSLFNALTGSYEYVGNWSGVTVEKKVGT
                     LRSKTGKLIDLPGIYDLNPISRDETVVTRFLLEEKFDCMLNIVDSSQIERNLNLTIQL
                     LEFGAPVVMGLNMIDVAAGRGIHLNIQNLAKQLRIPILPVVARSGKGTDDILSTLSEK
                     HVAPAIPLILPYGEPAEKAITEIQALIKDMIPAKQSRWLAVQFLSKNEVTEEFLATCP
                     ALEQLKHIRTELEIALDGKLENHFHQVRVNYIHDICLTSVEYTRHSDIPLSDKLDKIF
                     THKFFGIPIFLGIMWLIFQITFTWVGAPLSDLLDGFIGGPLTDSVTSFLTAIGASGFI
                     TDLVADGIIAGVGGVLVFVPQILVIFFFISVLEDSGYMARIAVVMDRVMEIFGLNGKA
                     FIPMIIGFGCNVPGIMAARSIEESKERTLTILVSPFMSCSARLPVYALFVGVFFEKHQ
                     ALVVLSLYVIGILMALIVTKILSKTLLKKDNSVFVVELPPYRLPSLKTLWRSTWEKGK
                     GFLRKAGTFIFAGSVIIWLLNYAGPSGLDVPMGESFLAIIGGMLAPLLVPLGFGTWQA
                     GATLIPGFLAKEVVVSTMAIIYAVGESSLGSIVSTFYTPLSAYCFMLFILLYIPCLAT
                     VAAIRKETSSWKWTAFAVAYPLVTAYVLVFLVYQIGSLFV"
     gene            17034..17216
                     /locus_tag="U0342_001046"
     CDS             17034..17216
                     /locus_tag="U0342_001046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FeoB-associated Cys-rich membrane protein"
                     /protein_id="HEM2422400.1"
                     /translation="MFFVSIMVNLLLGGAIFGYTIYAIIKFIKRSKQGKCGGCELEKA
                     CNCESDEHTNLDHIFK"
     gene            complement(17246..18100)
                     /locus_tag="U0342_001047"
     CDS             complement(17246..18100)
                     /locus_tag="U0342_001047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009929107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM2422401.1"
                     /translation="MALKIKWIIAISMIIVLLVVGWFLGTRLTVKKYEVSSAKIEKEI
                     KLVQLSDLHFSEFGDKNENLLHKVANLNPDVIAITGDLFDRQGDSVPKELIKKLTKIA
                     PVYFSPGNHEYDVKNAYEDDYKPFLEKIGVVNLEDQTATIDVGGQKFQMSGLRSSANL
                     DYDYPYYKEGLAEIKKQQDSTYYQILLSHMPDYFELYVENGFDLTLSGHTHGGIVRIP
                     YTNIGAIAPGPQRTLLPDYVYGEHSKDGKTMIISAGLGAGSLHQKAFPRLGNPYEIVA
                     VTIKPATN"
     gene            18353..19114
                     /locus_tag="U0342_001048"
     CDS             18353..19114
                     /locus_tag="U0342_001048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2422402.1"
                     /translation="MNQKERIVEELKLLENKKTISQEELMQIFSISKDTARRDILKLV
                     ESGLAERYPGGVSLPVLKPQIESYTSRLVKQSEQKKKIAYAAGKVIKDHMTIYLDVST
                     TVHFLASNLEQHDLVVVTNSMDNAIAASQKEANKVYLLGGFFNFHSRVLSGEPVLGQL
                     QQFNFDVAFIGGAGLTEDGIFYSELTDVYMKQEIIRNSEKVFLLIDSTKVNKKTASKI
                     DFSGIDAVITDQPLPKDLMQCLISKEVEVISLKGL"
     gene            19120..20253
                     /gene="nagA"
                     /locus_tag="U0342_001049"
     CDS             19120..20253
                     /gene="nagA"
                     /locus_tag="U0342_001049"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM2422403.1"
                     /translation="MAVIKNVKIYKENELIDAAVITEGNLIKEVCSTTPEKYSDEPTF
                     DGNGQLLIPGMIDVHIHGANNYDMMDGSTESIQAVSMACAETGCTSFLVTSVSSSFED
                     LIQMIKQTKKVIGKEKGAKIAGIHLEGPYLNIEKKGMQNPAYLRHPDLKEMKKIFDEA
                     DGLIKMVTIAPELPRGIELIDFLKKRGVVVAIAHSNATYEEAQNAFEQGATHITHCFN
                     AMPAIHHRAPGLVTAALENDSVSVQTIVDGVHLHPGIVRLIHKIKGPDKMVLTTDALQ
                     AMGVGDGEYIFGGHQVTVKEGIARLKDGTLASSTVTMNKSLKLSNEFGIHLQDAIQMA
                     ASTPADILGMNNFGRIEKGYVADLVLLDKNFEVLTTWIDGEIY"
     gene            20295..>21063
                     /locus_tag="U0342_001050"
     CDS             20295..>21063
                     /locus_tag="U0342_001050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2422404.1"
                     /translation="MPLFKHEGTYFNYEIQGEGIPFLFLHGLGDNLKFAYETFDKDEK
                     IQLISLDQRGHGKSGNDSRKLSYDRLAKDALALMDYLGIQHFFVGGLSMGAGVAVNLA
                     VQAADKVLGLIILRSSATDEPMKKEVIAWFSTVSKYLPKKDGALLLEQDPIFPSIKET
                     YPKAIDTFKRYFEDDAAVTHYKKFSDIPKDRPIKNKSELTNLTIPTLILANNYDVIHP
                     IEYSLFYKRNIENASYYELTPKTIDAEKHKLEITTYIN"
BASE COUNT         6264 a         4131 c         4036 g         6632 t
ORIGIN      
        1 caatggcgaa agaaaaaatc gtattagctt actcaggtgg gttagatact tctgtggcaa
       61 ttcagtggtt agtagaatca ggttatgaag ttattgcatg ttgcttagat gttggtgaag
      121 gcaaaaattt ggattttatt aaagaaaaag ccattactgt tggagcaagt gaatcctaca
      181 cgattgatgc aaaagaagaa ttcgcggagg attttgcgtt aattgccctt caagcccacg
      241 catattatga aggaaaatat ccgcttattt ccgctttaag tcgtccgtta attgcgaaaa
      301 aattagtaga agtagctcgt caagaaggtg cctctgctat cgctcatggt tgtactggta
      361 aaggaaatga ccaagttcgg tttgaagtag cgattcatgc acttgctcct gatttaaaag
      421 ttgtttcccc tgtccgtgat tggaaatggt ctagagaaga agaaatcaat tacgccaaag
      481 aacataacat ccctgttcca attgatttag ataatccttt ctcgattgac caaaaccttt
      541 ggggtagaag taacgaatgt ggggtgcttg aaaacccatg gacaacacca ccagaagcag
      601 cttacgactt aacagtgagt ttagaagacg caccagatac accagatatt gttgaaatta
      661 cgtttgatgc tggtattcca atttctctaa atggagaaaa tatgagccta gcaaatttaa
      721 tccttacttt aaatgaaatt gctggaaaac atggtgtcgg tagaatcgat catatcgaaa
      781 atcgtttagt tggcattaaa tcacgtgaag tatatgaatg tccggccgca gtcactttga
      841 ttactgcaca taaagaatta gaagatttaa cttttgttcg tgaagtggca catttcaaac
      901 ctattatcga acaaaaaatc agcgaaacaa tttacaatgg cctatggttc tcacctttga
      961 cagaagcatt agttgctttc ttaaaatcca cgcaaaaatt cgtgaacggt acgattcgcg
     1021 tcaaattatt taaaggtcat gccattgtgg aaggaagaaa atcaccaaat tcgctttatg
     1081 atgaaaacct agcgacttac acgtcttccg atacattcga ccaagatgca gcagttggtt
     1141 tcatcaagct ttggggatta ccaacgaaag taagcgcaga agttaattca aaagtgacaa
     1201 taacaactga ggtgtaaaaa atggaaaaac tatggggcgg acgttttcaa gggaaaagtg
     1261 aagcatggat tgacgatttt ggtgcttcga tttcttttga tcaaaaaatg gcaaaagaag
     1321 acttggcggg aagtttagcg catgtcgcta tgctcagcaa atgcggaatt attcctgctt
     1381 cagaagcagc tgaaattacg gccggattaa aaatcctcca agaaaaatta gcgcttggtg
     1441 agctcgaatt cagcacagtt aacgaagata ttcatttaaa tatcgaaaaa ctattgcacg
     1501 aggaaatcgg cccagtcgct ggaaaacttc atacggcgcg cagtcggaat gatcaagttg
     1561 caacagacat gcatttgtat ttaaaacaag ccgtagcaga aattattcag tcattaaaac
     1621 atttacgcgt ggtgctagtc caaaaagcgg aggcgaacgt cgaaacgatt atgcctggct
     1681 atacacactt gcaacacgcc caacccatct cttttgcaca tcatttatta gcttactttg
     1741 gaatgtttac acgggatttg gagcgtttag aagaaagtgt caaacggatt gatatttcac
     1801 cgctcggttc tgctgcgctg gctgggacga cttttccgat tgaccgagcc tacagcgctg
     1861 aattacttgg tttttccgct atctatgaaa atagtttaga cggcgtgagt gatcgtgatt
     1921 ttattatcga gtttcttagt aacagttcta ttttaatgat gcatttatcg cgtttttgtg
     1981 aggaattgat actttggacg agtcatgaat ttcaatttgt cgagttaacg gatgcttttt
     2041 caacgggaag ttcaattatg ccgcaaaaga aaaatccaga tatggctgag ttaattcgcg
     2101 gtaaaactgg ccgggtttac ggaaacctgt tcggcatgct aacggtttta aaaggtctcc
     2161 cactcgctta caataaagac ttgcaagaag ataaggaagg catgtttgat acgcttgaga
     2221 cggttcaaac aagcttagat attttcgcag gaatgattga aacgatgaag atcaacacag
     2281 aaataatgga agaatcgacg caaaaagatt tttccaatgc gacggaacta gcagattatt
     2341 tagcgaaaaa aggcgttcca tttagagaag cgcatgagat tgttgggaaa ttggtgcttg
     2401 aatgtacgca aaatgggatt tatttgcaag atgtagcgct tagccactat caggaaataa
     2461 atccacttat tgatgatgat atttacgtgg tgctttcctc taaaactgcc gtgcaaaaaa
     2521 gaaattctta cggcgggact ggatttgatc aaattaaagt tgctctcgaa aacgcgaaaa
     2581 aaacattgta aaactaactg ggatgctgaa tggcgttcca gttttttgct gacttctccc
     2641 cctttttcct cttacatgat ttgtcagagc actacttttt ttgttactat taaaaagaat
     2701 gttacctttt tgctaacatg gggaaataga tacagagaat ataaagggaa gtgatgtatt
     2761 gaaaaaatta acaagtgttt tttggggatc gggttgtctt gttttattag ccgttttatt
     2821 tggagccttt ttgccaaaac aatttgaagc ttttacaacc aatatccaaa aatttctaac
     2881 aagtaatttt ggttggtact atttaattgt tgtagcgatt attattatct tctgcttgtt
     2941 tttagtttta agtccgattg gctcgattcg cctcggaaaa cctggtgagg aaccggggta
     3001 tagtaataag tcttggtttg cgatgttgtt tagtgctgga atgggaattg gcctcgtttt
     3061 ctggggtgca gctgagccgt tatctcatta tgcagtccaa gctcctggcg gtgaagtcgg
     3121 cacgcaagca gcgatgaaag atgcgcttcg ctattcattc ttccactggg gaatttctgc
     3181 ttggtcgatt tatgcgattg tcgctttagc actggcttac ttcaaattcc ggaaaaatgc
     3241 gccgggttta ataagtgcca ctctttatcc tattttaggg aaacatgcca aaggtccaat
     3301 tggacaattg attgatatca tcgctgtttt tgcgacagtc atcggtgttg caacgacact
     3361 cggccttggc gctcaacaaa ttaatggtgg tcttacatac ttgtttggcg ttccaaacaa
     3421 ttttactgtc caatttacca ttattatcat tgtcaccatt ttatttatgt tatcagccat
     3481 gtctggactt gataaaggga ttcagctttt aagtaatgta aatatttatg ttgctggagt
     3541 tttattagtt ttaaccctta ttcttggacc taccctattc attatgaata acttcaccaa
     3601 ttcatttggt gactacttac aaaatatcat ccaaatgagt tttcagacag cacctgatgc
     3661 gcctgatgct cgaaaatgga ttgactcatg gactattttt tattgggctt ggtggctttc
     3721 ttggtcaccg ttcgttggga tttttattgc cagaatttca cgcggcagaa cgattcgcca
     3781 attcttgctc ggtgtcatcg tgttgcccgc tttagtcagt gtattttggt ttgccgtatt
     3841 tggcggctcg gcgatttttg tcgaacaaca tggaaattct gggctttcaa gtttagcaac
     3901 tgaacaagta ctctttgggg tatttaatga attcccagct ggtatggttt tatcgattgt
     3961 tgcgatgatt ttaattgcag tcttctttat tacttcagca gactcagcca catttgttct
     4021 cggtatgcaa acgacgggcg gatctttaaa tccaccaaac tccgtcaaag taacatgggg
     4081 cctactccaa gcaggaatag caagtgtgct actttatgca ggaggactca cagctcttca
     4141 aaacgcatcg attatagcag cctttccgtt ttctatcgtc attatcttaa tgattgtttc
     4201 gttattcgtt tcgttaacga gggaacaaga aaaactcgga ttgtacgtcc gaccgaaaaa
     4261 atcacaacgt tcccaactat aataaaaagg gatgaaaatc tacaactaga ttttcatccc
     4321 ttttttcatc cttttttctg ctttgccgcg actatttcgc gatagctacg agtttgttta
     4381 ggatattttt ttcgaaagaa atgttgcgaa acaactgcta acacgagaga aatggcggta
     4441 attggaatag agcttttaaa tataccgacc atcagtaata aagcactggc aaataacgtt
     4501 gcattaaaaa ggaatttttc cattagttac tcctccaaat tataatttaa ttcgcggtca
     4561 tgagctaatt tttttatacc taacgcatca aatactaacg ctttttccgc aatataggca
     4621 ttgtattcaa tacgctctag catgtcgtat gctttatgaa gtgatgtatc taatacgaca
     4681 ataccgtgtt tatttaataa acttgcacta ggaacagctt tatctcctag ttcgataacg
     4741 tgtttacgaa cgatttccgc aagttctgga ctagtcgctg gcgcaaattc aagtgttgga
     4801 atttggccaa ttttttgcgt tgcttctgtt aaattcggta attccattcc aagtgtggca
     4861 aatagcatcg attcttttgg atgagcatgg agtacacagc caatttttgg attttctacg
     4921 taacaagcgc ggtgtaagtt aatttctcta gtaactcttc cgtccccttc tacgacttca
     4981 ttgttattat ccactacaag gatttcatat ggggaaagat cgcaaagttt tgcttgactc
     5041 atgagtgtag gtgtcataat aatgtgctca ctattcatgc gcacacttac atttcctcca
     5101 gctgcattcg tttcaaagcg gtcaaacatc gtcttcacta tttttgctaa atcttcacgt
     5161 tctttttggt ataacatatt atctctcctc caattgtata atgcttactt gattcttgag
     5221 ttttccagca gcttctaaat caaagctcga actgtcttgt tgcatgactt tactagcgga
     5281 acaacctgtc gcgactttta atgtttcagt aatcggcatg ttcatcgcaa gtcctgcaat
     5341 aaatgcccca acaaacacat cgccagcccc agtatcattg cgttcctgca cttttggtgg
     5401 aataacttga tacaacttgc cattatgcgc gcaaagtgat ccttttgctc caagcgaaac
     5461 gactagatag ggaatttttc cggctaattt gcggacattt tcttctagtg aattggtcgt
     5521 ttcatccaaa atggcaatga cttcatcttc atttggttta atgaaatcaa cgcccatttc
     5581 gaccgctaag tttaaatatt caccagaatt atcacatccg agaaacgctc ctgttgcttt
     5641 gacagttctt agtagttctt taaaatcaga taatgtataa tgaggaggcg gagatccagc
     5701 aatcaccacc atatcctctt ttttaacttt tttagcgatt tgttttaaaa gattgtcttt
     5761 gttggtctga cttacggtaa aaccagcttc aggtatcatc gtgctgccat tcgtgtcatc
     5821 acttaagacg acgaagcatt ctcttgtcga agttccagct tctacaagga aatcatggtt
     5881 gatatgtttt tcttttagaa tggcatatag tttgtcgaga ttgtccgatc ccgcaattcc
     5941 aagtgcttca tttttaatac cgaatttgga taacactccc gaaacatgaa gcccctttcc
     6001 cccgcaatca aattccgttt ttttgactcg attagtcttc cttttttcta actctccttg
     6061 aatgaaaagc aaccggtcaa tggctggatt taatgttatc gtgtaaatca tctcatcact
     6121 cctatttctt aagagctagc tttttctagt tcaattgttc gttttttcat cattttcaca
     6181 tagaatacta gtaatactac ccaaattgcg acaaaaataa agcctaaaat agtaaactga
     6241 cttgcttctg caaagatata acggaacact ggatattcaa gtgtactcca tgtaatttgt
     6301 tgtccagctt ttagcgaaat tgcgcctgtt gaatgcgcta aatccgtaat tgttccagcg
     6361 aagaaagtag atacatataa gaaaatcggt gtggtaattg ttccaaggat aatcatacga
     6421 attaagtttc cacctgttac gataagtgct ggtgcgcata aagaaatatt taaaatccca
     6481 gcgaacggta atacgccatt tcctggtaaa ataagcgcaa agataagtgt aactggaacc
     6541 atcagaacga ttgctaccca aacttcacta catcctgcta aaatcggcca atctagccca
     6601 ataaacaatt cacggttttt aaatttacgt ttcatgaact cagaaatacc atcagatagt
     6661 ggcgaaagag cttgcataaa tagttttgca accatcggga aaagagttaa tgctgctgca
     6721 gcttgcatgg ctaacatcaa ggttttcgca acatcataac cagctgcaat ccccagaagt
     6781 ccaccgataa taaagcccat cacatggttt tctgcaaaaa taccaatttt atcttttaac
     6841 gcattggcat ccatgtcttt acgaagtgct ggaatttttt tcagtaacca gtcaagcggc
     6901 attaagaaaa tacagaaaat catcataccg tgagaaacgg ttacacctgg aattccattt
     6961 aactcttgaa tttgacgttg gttggcatca catagaatta gttctgtaac aatttgaatt
     7021 ccggcaacaa taaatgctaa gtaaacattt tgtgttacac cgataataag tacggctgtt
     7081 aaaattttcc cccaaacatt ccataaatcg acgtttaagg ttttggtttt attgataacg
     7141 agcataattg cgttaatacc tagttgtagc gggaacatca agaaggcaaa tggccatgcc
     7201 caagcaagtg ttgccatcga tgtccagcct ccatctaaga tgcttaaatt aatccctgtt
     7261 ctctcagcta gtccttgtgc agctggtgtt aaagcttcaa tcataaagcc gataacgatg
     7321 ttcattccaa ggaaagcaac ccctagaata atccccgcac tgactgcatc tcttactttc
     7381 attcgtacaa ttagcccaat aataatcatt agtgctggaa caaaaacggc agctccaagg
     7441 ttcaaaataa actgtataac tgattgtaat gactccattt tttcacgctc cctgttttat
     7501 ctggtttatt ttaaggcgtt aagtaatttt tctgtttctt cgtccatgcc catgcctgtt
     7561 aagaaggcaa taccattcaa tgttggaata tcgaattctt tgttcgcttt tgtaatagct
     7621 acatatacat cacttgtttt aatatgttgc tctaaagact taatatctac tgcttctaca
     7681 gttgcacgaa cccctttttc ttttaaaatt cgttctactt ttgatgctac tgtttggctt
     7741 gttgctacac ctgatccaca tgctacgata acttttttca ttgtaatcac tctccaaatt
     7801 gtttttttag gaaatcacat aaagtattgc tatcatttat tgtttttatt tgttccacaa
     7861 agtctgcttc cataaatttc tccatgatac ttgaaagcag tggaacttga tcttggggat
     7921 ttttgattcc taacatgaaa attacttcga catcaatcca cttatctgtc gttcccattt
     7981 gaataaaagg aatcggcgta gaaagtttat ttacgagtac aaaaggacgt tttacataaa
     8041 tcgtgtctgt atgaggaatt gcaattttga tgccattcat ctcgagacca gtaggaaaaa
     8101 caacttctcg gcttgttacc gcttctctaa aagtcggctc tacatactgc tctttctcta
     8161 atatcttgct cgtgtattca aaaagttctg cctgattctc gtatcttgaa tttatcaggg
     8221 ttaactcttt ttgaaacaaa tcatggtaat ccacgcgacg ctcaccccct ttcaaggatt
     8281 tcaacgattt tctttttgtt agtagaagcg agaattcccg ctaatttctc aggcttcaag
     8341 aaaatttcgt tcaattttag taataatggt atatgtttgt tttgttcaga tggtgctaag
     8401 gcaatcatga ttttgactgc ttcattttca ggggtttttg tgtccgcttt cattatcatc
     8461 aactgaatat cttgctcaat taccccgttt gcgggtttgg catgtggtaa ataaatattc
     8521 ggcccaatca tcatctgctc ataattttga tagaatattt cttcacaagt atgaatgtaa
     8581 ctagcatcca ccgttcctcg ttctaacatt ggtgcaaatg ccaccgaaac tagttgctcc
     8641 cactcaagtg gcgtttctaa gaagtgaacc tgctcttccg taatttgcat ttgttctggt
     8701 tctttcttct ccataggttg ctcttttttg ttgaaaaagg attccatttt ggcttgcact
     8761 aatcgaatat tttcttcggg aatttcatct tttagcatag caagcagttc tttggttttt
     8821 ttatgactgt ccatttcgat tgctttatcc acttgttccc taaggatttg gcggctgtct
     8881 ttacttaaaa tggacgggat tacaaaaatg gtggcatcgc tttgaacggg cacagtcgta
     8941 aaaataaaat caatatcgcg tgccaccgta cttaattgcc gcaccgcata agctccttga
     9001 aaatcaatat tcggaaacat cattttcaag ttttctaaca gtagtttaga gatggatgta
     9061 ccacttttac aaaggacaac tgcgcggaaa atcggctgtt ctgtttcttc aatttgatac
     9121 atccacccaa gaactatcat agaaagatac acaatctcct cttctgacca cttgtgacca
     9181 accaattttt caaaaggttt ggaggctttt tctacaatgt taaatgtcgg ggtgtactct
     9241 ttaataaact gctttttaag tggattattg atttgaaatc ctaaaattgt tcggtaaatt
     9301 gctggcctaa catgtaaaat cactttttct ttaaattcat ttttcttcat gatttccgtc
     9361 gcaaaataca tttctagtaa acgaatgaac tcgtcgactg cgtaggcgat ttcttcactg
     9421 tctgagaaat gaagcgccga ctcgactaag ttcgaagcga ggacttgtaa cgataagtaa
     9481 agtaaatcgt tttcacttaa aaaatcatac ccccaaaaca tttctttcat tatcgggaac
     9541 tcacgggtat ttttgatgtc atacatttca attttaaatg tccatttctt gtttgttact
     9601 ttggatcttt tgatgatgcc gtggagaata tagggcaatt cttccatctg ctcatctgta
     9661 aaggtaattt gaagcttact ttcaaccttt tcgagccgtt tttttagtaa aaacacttcg
     9721 ctcacagtaa tcagcttctt ttcatcaagg acaaatttcc cgtatggggt ctgaacgact
     9781 tcgcgaataa gttctgctag taaattacga atcagaaatt ctgaaccaga aacagcgtag
     9841 ccatctctcc tcgaataatc aagctgaatt tcaaactcat gcagactctc tttgatactt
     9901 ttaacatctg taagcatggt gtttttactt acataaacgt agtccgcaag cgctccgagt
     9961 gacatataat gattatgaag tagtaattta atcatgataa gtttgcgacg aatatttacc
    10021 tcataaaacg aaaacagctg ttgctcttcc gcagttaaaa gccggtaaca agcttcccta
    10081 catacatctg taacaaaaat catatcatga tcaatcaaaa ttggttctga ctttagtaga
    10141 tggtttattt gtgtaatctg tgcgctaatt gcttctttgg atactttaaa attcttggaa
    10201 acatttctaa gattcacttg tcgattcaag agcagataag taattaattc cttacaattc
    10261 tgttccatct actttcccct cccttatatt aatagtaaat gataaccctt acataaaaat
    10321 ggtgattcat cacaacttcg cttttggcag aaagatttat tgtgatgagt taaaatcgcg
    10381 ggttactttc tattatagat tagaaggatt ttttggggaa tatgaaaaaa gtgcaagata
    10441 gctttaaatc aagcttcctc gcactttttt tctattaata tttgctttat tatttcagct
    10501 atacgtctcg cttctgtctt ctcaagccgc gcataagtta cacggataac cgcttctttt
    10561 accccaaata aaaatcctgg cataacaagt aaatcattcg ctaaaaatat atcaaaatca
    10621 cgaatcgagc gaaattcgac tggtaatttc acccataaat gaaaaccacc ttttggctta
    10681 ataaatacta catcattcgg taaaatggct tcgaaagctt cgattaaatc atctcggcgc
    10741 tgttttaata cgtggtgcaa ttgctgtaaa tgcaccttgt aaccgggcgt attcaaaaca
    10801 ctatttgcca gtacttgtgg aaaaatactt aaaccaaaat ccatctcttg cctggcgagc
    10861 gcgagccgtt caattactgc tgtcggacca ataagccaac caattcgtgt agtggatccc
    10921 ataatttttg agagcgagcc aatgtataac acattatctg tgtccagttg tttcagtggt
    10981 gccggaactt ggctgtctag tgcggctagt tctgaaaatg gatcatcttc aactatcggt
    11041 atttgcaaat gagcgcaaat tttcacgagt tctttgcgcc gttccaaact cattacaagt
    11101 ccagttggat tttgaaaggt tggattaaca aaaaccattt tcacacggtg tttatggtat
    11161 aaatcgcgta attcagaaat aatgacacca tcctcgtcca ttggtagtgc aaaaatccgc
    11221 aaaccggctg actgaaacaa cgatagcgaa taaaagtagg aaggcgactc aattgccaca
    11281 gcatcacccg gttttaataa acattgcgta attaaaaaga gcgcttgttg tgcacccgat
    11341 gtaatgaaaa tttgttcggg tcgtgtttgt aagccataag cttccttcat ctgtttttga
    11401 atcgtttcac gcagtggttt gtatcccgct tcatcctcct gttgttcttc tgcaataaaa
    11461 gactgccatg aaagactcgg tgtttccatt tttggcgtca tttcaagtgg caattccccg
    11521 ctcgctgcat caatcacttg atccgaatca gctcgttcca ttactcccgc ttgccgaata
    11581 taagggactg ctggtgtaaa gcccccttgc gttaaataat ggcgccaatt ggttgactgc
    11641 cctgcaaaaa gcccccattt ttccgcattg actgtcgttc cactaccttg tttgcgaatg
    11701 ataaccgcac gtgctgtaag ttcatcgagc gcccgcacaa ccgtcgaacg attcacccca
    11761 aacatttccg ccaactgtct ttccggaggc aacttctctt ctggcaaaag ttctccgttg
    11821 ataatttttg tttctattaa atctacaatt tgtaaataaa ttggtaaatt agaatttcca
    11881 gcaagtttcc acatctacta cacctctttt ataattggat ggagaaaaca acatccaatt
    11941 ggctgttttt acgaaatggc ttttagctta tcataataat caggtatttt caattaactt
    12001 tgatggaggt tattagtatg gagaaaaaag ttggtacaga tcgtgtaaaa cgtggtatgg
    12061 cgcaaatgca aaaaggtggc gtcattatgg acgtagttaa tgctgaacaa gcaaaaatcg
    12121 cagaagaagc tggcgctgtt gccgttatgg cgcttgaacg ggttccttcc gatattcgtg
    12181 cagctggtgg tgtcgctcgt atggccgatc ctcgtattgt cgaagaagta atgaacgctg
    12241 tttctatccc cgtaatggcg aaagcacgta ttggtcatat tacagaagct cgcgtccttg
    12301 aagcaatggg tgttgattat atcgacgaaa gtgaagtatt aacaccagcc gatgatgaat
    12361 tccatttatt aaaatcagat ttcactgtcc cattcgtgtg tggttgtcgt gatattggtg
    12421 aagcactccg ccgtattggt gaaggggctg ccatgcttcg tacaaaagga gaacccggaa
    12481 caggcaatat cgttgaagct gtccgccaca tgcgccaagt aaacggtcaa atccgccaaa
    12541 ttgcgggaat gacggatgat gagttaatgg ttgccgctaa aaacttcggt gctccatatg
    12601 aattaatcaa agaaattaaa acacttggca aacttccggt cgttaatttt gctgctggtg
    12661 gtgttgcgac tcccgcagat gccgcattaa tgatggaact tggagcagac ggcgttttcg
    12721 ttggttctgg tattttcaaa tcagataacc ctgccaaatt tgccagtgcg attgtccaag
    12781 ctaccactta ctatactgac tatgagctaa tcggaaaact ttccaaagag ctaggttccc
    12841 cgatgaaagg aatcgaaatg tctcgcctta acccagaaga cagaatgcaa gatcggagca
    12901 tttaatatga aaaaaattgg agtccttgca attcaaggtg cagttgatga acatatccaa
    12961 atgattgaat cagccggtgc tcttgctttt aaagtaaagc attcaagtga tttagatgga
    13021 cttgacgggc ttgttttacc tggtggtgaa agtacaacga tgcgcaagat tatgaagcgt
    13081 tatgatttaa tggaacctat ccgcgcattt gcaagtgaag ggaaagctat ttttggaact
    13141 tgtgctgggc ttgtcctttt gtcaaaagaa attgaaggtg gcgaagagag cctaggattg
    13201 attgaagcta ccgcgatccg taatggtttt ggtaggcaga aagagagttt tgaagccgaa
    13261 ttaaacatcg aagcatttgg tgaacctgcg tttgaagcta tatttatccg cgcaccatac
    13321 ttaattgaac cgagtaatga ggtagctgtg ttagcaacag ttgaaaatcg aatcgtagca
    13381 gctaaacaag ctaatatttt agttaccgca ttccatcctg aacttactaa cgacaatcgc
    13441 tggatgaatt acttcctcga aaaaatggta taaaaaaagc agtagacaat ttagtctact
    13501 gcttttgcat attatttatt cactgcttgc gctgctgtaa ttaacgttaa gttataaacg
    13561 tcatctgtat tacaaccacg agataaatca ttaactggtg catttaagcc ttgtaaaatt
    13621 gggccaactg cttcaaagtt acctaaacgt tgcgcaattt tgtaaccaat gtttcctgct
    13681 tctaggcttg ggaagataaa tacatttgcg tcccctttaa taacggatcc tggcgctttt
    13741 ttctcagcaa ccgttggaac aaatgctgcg tcaaattgga attcaccatc aagcgttaat
    13801 tcaggtgctt tttcttttgc aagagcagtt gcttctacga ctttttccgt ttcatcggat
    13861 tttgcagaac cttttgtaga gaaacttaac attgcaacac gcgggtcaat gccgaagatt
    13921 tctgctgttt ccgcacttac aatcgcattt tccgctaagt ctgctgcaac tggtgcaatg
    13981 ttgatagcta catcactgaa taaatagcgt tcttcaccgc gaaccataat cattgcgccg
    14041 gcaactttac ttacgcctgg ttttgtttta ataatttgta gtgctgggcg aacagtgtca
    14101 ccagtagagt gagccgcgcc acttacaaga ccttctgctt ttccagtgta tacaagcatt
    14161 gttccaaaat agtttggatc aacgagcatt ttacgtgcag cttcttctgt tgctttccct
    14221 ttacgacgtt ctacaaatgc agccactaat tcatcaaaaa gtggatcggt cgcaggttcg
    14281 tgaatagcga ttccttcaac agaaacgcca atttcttttg cttttgcttc aatttcagct
    14341 ttgttaccaa gcaaaattgg ttttacgata ttttcttttt gcagacgtgc agctgctcca
    14401 acaatacgtt catctgttcc ttcaggtagt acgatgcgca cgtttttccc agtaacttgt
    14461 cctttgattg tagtaaataa atcactcatg tgttaattgc ctccattaat atacatatta
    14521 tagttaccat tttactataa aaaagaacaa cttgacagaa aaaaagtgat taaaaacagc
    14581 tccagcactt atttccgtgt atcaatacag aggtaaaaag gcatgcttct tagttaaaag
    14641 acggctatgc tcttaagaaa tttttttgct gttataccct actattttgc tattctagca
    14701 gcaatttcaa aaaaacactt catattaagg tctgttcgtg ataaaatgaa catagttgat
    14761 aatgattatc atgttcatta aataacataa aaggaggcct gctagcttat gcaattaaat
    14821 gaaactgctg tcggtgaaaa agttcgcatc tcagaattaa aaattgagaa cgccatgctt
    14881 aaacgtcgct tacttgcact tggttgcgat gaaggttgtg atatttgtat caaacaaaaa
    14941 ggactatttg gcggtccctg tacttttgaa acaaaagggc aatatatcag cattagacaa
    15001 tgtgatgctt gcgccattat ggtggaacgc agatgagtca aaatacatat tgcttactcg
    15061 gaaacccaaa taccgggaaa acttccttat ttaatgcatt aacaggctct tatgaatatg
    15121 taggaaactg gagcggagtc accgtcgaaa agaaagtcgg tacgttgcgc tcaaaaactg
    15181 gaaaattaat tgatttaccc ggtatttatg acttaaatcc gatttctcgt gatgaaacag
    15241 ttgtcactag atttttactg gaagagaaat tcgattgtat gttaaatatt gttgattcct
    15301 cgcaaattga gcgaaatcta aatttaacca ttcagctact tgagtttggt gcacctgttg
    15361 tgatgggact gaatatgatt gatgtagctg ccggtcgcgg tattcatcta aacatccaga
    15421 accttgccaa acaattgcgc attccaattt tgccagtagt tgctcgttcc ggaaaaggta
    15481 cagacgatat tttatctact ttgtcagaaa aacacgtagc tcccgcgatt ccacttattt
    15541 taccatacgg ggaacccgcg gaaaaagcga ttactgaaat ccaagcttta atcaaagaca
    15601 tgattcctgc caaacaatct cgctggcttg ctgttcaatt tctttctaaa aatgaagtca
    15661 cagaagaatt tttagcgaca tgccctgctt tggagcaatt aaaacatatc cgcacagaac
    15721 ttgaaattgc gcttgacggt aaactagaaa atcattttca ccaagttcgt gtgaattaca
    15781 ttcatgatat ttgtttaacc tcggtcgaat atacgcgcca ttcggatatt ccactatccg
    15841 ataaactcga taaaattttc acccacaagt tttttggcat tcctattttt cttggtatta
    15901 tgtggttgat tttccaaata acctttactt gggttggcgc accgctatct gatttgctcg
    15961 atggttttat tggcgggccg ctgacggact ccgtaacatc ctttttaaca gccattggcg
    16021 catctggatt tatcactgat ttggttgcag atggtatcat cgctggtgtc ggtggcgtgc
    16081 ttgtctttgt tcctcaaata ttggttattt tcttcttcat ttctgtctta gaagattccg
    16141 gatacatggc tagaatagcg gttgttatgg accgcgtaat ggaaatcttc ggcttaaatg
    16201 ggaaagcttt tattccgatg attatcggct ttggttgtaa tgtccctgga attatggcgg
    16261 cgcgctcgat tgaagaatcc aaagaacgaa cactaactat tctcgtttca ccatttatgt
    16321 cctgctccgc gcgacttcct gtttatgctc tttttgtagg cgtgtttttc gagaaacatc
    16381 aggcgctcgt agtactttca ctttacgtta tcggtatttt aatggcactt atcgtcacta
    16441 aaattttatc aaaaacttta cttaaaaaag ataattccgt attcgtcgtc gaactaccac
    16501 cctaccgcct cccatcgctt aaaactttat ggcgcagcac gtgggaaaaa ggaaaaggat
    16561 tcttgcgtaa agcgggaaca ttcattttcg caggttcggt tatcatttgg ttgctaaact
    16621 acgctggtcc atctggactc gacgtaccaa tgggcgaaag tttcttagca attatcggtg
    16681 gcatgctcgc cccactactc gttccgcttg gtttcggaac atggcaagcg ggagccaccc
    16741 ttatacctgg ttttctagca aaagaagtag tcgtttccac aatggcaatt atttatgcag
    16801 ttggagaaag ttcgcttggc agcatcgtta gcactttcta tacaccactt tcggcttatt
    16861 gctttatgtt gttcatcttg ctttacatcc catgtttagc gacagttgcc gccattcgta
    16921 aagaaactag ttcttggaaa tggaccgcat ttgctgtcgc ttatccactt gttacagcct
    16981 acgtgttagt atttctcgtt tatcaaattg gtagtctatt cgtttaagag aggatgtttt
    17041 tcgtgagtat aatggttaat ttattacttg gtggcgcaat tttcggctac actatttacg
    17101 cgattattaa atttatcaaa cgcagtaaac aaggaaaatg tggcggctgt gaacttgaaa
    17161 aagcctgtaa ttgcgagtca gacgaacata caaatttgga tcatatcttt aaatagaaaa
    17221 aagagccttg atgaaggctc ttttttcagt tcgtcgctgg ctttatcgtc actgcaacaa
    17281 tttcatatgg atttcctaac ctcggaaatg ctttttgatg aaggcttccc gcaccaagtc
    17341 cagctgaaat tatcattgtc tttccatctt ttgaatgttc tccgtataca taatccggca
    17401 aaagtgttcg ctgcggtcct ggagcaatcg caccaatatt cgtatacgga atacgcacaa
    17461 tccctccatg cgtgtgacca cttaaagtta aatcaaaacc attctccaca taaagctcaa
    17521 aatagtccgg catatgcgac aaaagaattt gataatacgt tgaatcttgc tgctttttta
    17581 tttctgctag tccttcttta taataaggat agtcataatc taaattcgca ctactccgca
    17641 atccagacat ttgaaatttc tgtcctccca cgtcgatagt agcagtttga tcttctaagt
    17701 taactacacc aattttttct aaaaatggct tgtaatcgtc ctcataggca tttttaacat
    17761 catattcatg gttccccggc gaaaaataaa ccggcgcaat cttcgtaagc tttttaataa
    17821 gctctttagg aacactatcc ccttgcctat caaaaagatc tccagtaatt gcaatcacat
    17881 ctggatttaa atttgccact ttatgtaaca aattttcatt cttatcgcca aattcactaa
    17941 aatgcaaatc cgataattgc actagtttaa tttctttttc aattttagca gaactcactt
    18001 catatttttt caccgttagc ctagtcccca aaaaccatcc tacaactaaa agtacaataa
    18061 tcatactgat tgctataatc cactttatct ttaaagccat tttctcacct ctatgttgct
    18121 atttccattt attatcaata ttttgtcatc cattatatgt tacccctatc attataacct
    18181 agattaagtg ttgactcaaa atgcacgaaa aaaccacccc aattctaaca aaagtagaaa
    18241 agggaaaaaa tatcaggttg acataaactt gaaaaggtat ataattaact tataaaaact
    18301 tatttatata aaaaaataaa cttaagataa attatctaag gtggcgaaaa tgatgaacca
    18361 aaaagaacga atagtggagg aactgaagct gctagagaac aagaaaacta tctctcagga
    18421 agaactcatg cagatttttt ccatttcaaa agatacagca aggcgcgata ttttaaaatt
    18481 agtcgaaagc ggactcgcag aacgctatcc aggtggcgtg tcactaccag ttttaaaacc
    18541 tcaaatagaa agctatacaa gtagattagt aaaacaaagt gaacagaaaa agaaaattgc
    18601 ttatgcagca ggtaaagtga taaaagatca tatgacaatc tatttagatg tttcgaccac
    18661 tgttcatttt ttggcttcaa accttgagca acatgattta gtagtagtaa cgaattcgat
    18721 ggataatgcc atagctgcat ctcagaaaga agcgaacaaa gtatatttgc tcggtggttt
    18781 tttcaacttc cattcgcgtg tattatccgg tgagcccgtt ttaggtcaac ttcagcaatt
    18841 taacttcgat gttgctttta ttggcggggc tggactaacg gaagatggca tcttttattc
    18901 agaacttaca gatgtttaca tgaaacaaga gattatcagg aattccgaaa aagtattttt
    18961 actaattgat agtacaaaag taaataaaaa gacagcttcc aaaattgatt tttctggaat
    19021 tgatgccgta ataacagatc agcctttacc aaaagattta atgcagtgcc ttatttctaa
    19081 agaagtagaa gttatatctt tgaaaggatt gtgaaaataa tggccgttat caaaaatgtg
    19141 aaaatttaca aagaaaatga attaattgat gcagcagtta ttacagaagg aaatttgata
    19201 aaagaagttt gctcaactac tcctgaaaag tattcagatg agccaacttt tgatggaaat
    19261 ggacagttgc taattcccgg aatgatcgac gttcatattc atggggcaaa taattatgat
    19321 atgatggatg gctcaacaga aagcatccaa gctgtttcga tggcttgtgc ggaaaccgga
    19381 tgtactagtt tcttagtcac ctcggttagt tcttcttttg aagacttgat ccaaatgatt
    19441 aagcaaacta aaaaagtcat tggaaaagag aaaggtgcca aaattgcagg aattcattta
    19501 gaaggcccct accttaatat agaaaaaaaa ggaatgcaaa atccagccta tttaagacac
    19561 cccgatttaa aagaaatgaa aaagatcttc gatgaagcag atggtctgat aaaaatggtc
    19621 acaattgctc cagaattgcc taggggtatc gaactcattg acttcttgaa aaaaagagga
    19681 gttgtggtcg ccattgcaca ttccaatgca acttatgaag aggcgcaaaa tgctttcgaa
    19741 caaggagcaa cccacatcac acattgcttc aatgctatgc cagccattca tcaccgggca
    19801 ccaggacttg ttacagcagc cttggaaaat gattcggtaa gcgttcaaac cattgtagac
    19861 ggtgtccatc tccatcccgg aatcgtgcgc cttattcaca aaattaaagg accagataaa
    19921 atggttctca caaccgatgc ccttcaagca atgggagttg gcgacgggga gtatattttt
    19981 ggcggtcacc aagtaacggt taaggaaggc atagctcgtt taaaagacgg gacattagct
    20041 tcaagtaccg tgacgatgaa taaatcctta aagttaagta atgaatttgg gattcactta
    20101 caagacgcta ttcaaatggc agcaagtacg ccggcagaca ttttaggaat gaacaatttt
    20161 ggtcgaatcg aaaaaggcta tgtcgctgat ttagttttac ttgataaaaa ttttgaagtt
    20221 ctaactacat ggattgatgg tgaaatatat taaatcgact ggataaatac tttcagagga
    20281 gtggattata aaatatgcca ttatttaaac acgagggaac ttactttaac tatgaaatcc
    20341 aaggtgaagg cataccattt ttatttcttc atggattagg tgataattta aaatttgctt
    20401 atgaaacatt tgataaagac gagaaaatcc aattaatttc attggatcaa agaggccatg
    20461 gaaaaagcgg aaacgattcc agaaaactta gctacgacag gttggccaag gacgcattag
    20521 cgttaatgga ttatttagga atacagcatt tttttgtcgg aggattatct atgggggctg
    20581 gcgttgccgt gaatttggcc gtccaagcag ccgataaagt gctgggcctt ataatactta
    20641 ggagttctgc aacagatgaa ccgatgaaaa aagaagtgat agcatggttt agtaccgtaa
    20701 gtaagtattt gcctaaaaaa gatggtgccc tattattgga gcaagatccg atttttccat
    20761 cgataaaaga gacctatcct aaagcaattg atacgtttaa gcgctatttt gaagatgacg
    20821 ccgctgttac ccactataaa aagtttagcg acatacctaa agatagacca ataaaaaaca
    20881 aaagtgagtt gactaattta acaatcccta ctcttatact cgcaaataac tatgatgtaa
    20941 ttcatccaat cgaatacagt ttgttttata aacgtaatat tgaaaatgca agttattatg
    21001 aactaacacc taaaaccatt gatgcagaaa aacataaact ggaaataacg acttatataa
    21061 ata
//
LOCUS       DASEAA010000034        20947 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.034, whole genome shotgun sequence.
ACCESSION   DASEAA010000034 DASEAA010000000
VERSION     DASEAA010000034.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20947
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.034"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            35..346
                     /locus_tag="U0342_001051"
     CDS             35..346
                     /locus_tag="U0342_001051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEM2422405.1"
                     /translation="MNWKAFIAGVGAGAAAGHLVYHYLLSDKTISGDVILEKVKDAFK
                     QEGPIEGSWIQLKKQHYKKFAIDTFVYHGGITCIREGEKKQFEFIADANTGTIIDVYL
                     A"
     gene            complement(383..631)
                     /locus_tag="U0342_001052"
     CDS             complement(383..631)
                     /locus_tag="U0342_001052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sensitive transcriptional regulator"
                     /protein_id="HEM2422406.1"
                     /translation="MEIEQKKALVTRFAKIEGHVRSIKTMTEEERDLETIMQQIAAVK
                     KAMDAAAKLIYTEQMKELIEQGETDEVVIKKKIDSFIR"
     gene            complement(766..1617)
                     /locus_tag="U0342_001053"
     CDS             complement(766..1617)
                     /locus_tag="U0342_001053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2422407.1"
                     /translation="MDSIQIGKIKIYWLRGGYTHFDGGAMFGVVPKPLWEKKYPANDK
                     NQLANVTDPMFFQYLGKNYLIDSGLGNRRLTEKQKRNYGVTEESFVLEDLAQLSIAPE
                     DIDFVLMTHLHFDHVLGLTGVSEEGSFYSIFPNAEIWTSKTEWEEMKHPNIRSKATYW
                     QENWQTIAGQIHTFTKEKEFNDAIKMTHTGGHSNGHSVVWIESDGEKAIHMADIFPTF
                     AHQNVLWVTAYDDYPMTSISAKQEIFKQTFGENYWFLSYHDARFRAVQMDGNGKIEAE
                     LKIEQRN"
     gene            complement(1678..2322)
                     /gene="trmB"
                     /locus_tag="U0342_001054"
     CDS             complement(1678..2322)
                     /gene="trmB"
                     /locus_tag="U0342_001054"
                     /EC_number="2.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(46)-N7)-methyltransferase TrmB"
                     /protein_id="HEM2422408.1"
                     /translation="MRVKHKPWAKDRLKEFPAIYIKNPEDFKGQWREVFGNDNPIHIE
                     IGSGKGQFISGMAKANPEINYIGIEMIESVLVSALDKAIEADVSNLRLVARDAKLLEE
                     CFEKGEIAQIYLNFSDPWPKKRHTKRRLTNPTFLTIYERLLPKAGEIHFKTDNRSLFE
                     YSLVAFSEYNMLLTFVSLDLHNSDYEGNIKTEYEEKFSAKGFPIYRLEAKFDRN"
     gene            complement(2329..3111)
                     /locus_tag="U0342_001055"
     CDS             complement(2329..3111)
                     /locus_tag="U0342_001055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM2422409.1"
                     /translation="MKDNFFGREYDIAPAGGETGQAFVATHEDEKFFLKRNSSPFLAA
                     LSVENIVPKLVWTRRVENGDVITAQKWVNCHILTREEMVGPRVAKLLAKIHHSENLQH
                     MLAKIENCYFSADQLLSLIKVNTKANNELSKEIIAAIRYLEQNLSAAQTNDYVVCHGD
                     VNHNNWIISEENELFLVDWDGAMLADPANDIGMILYQYIPRKDWVSWLSNYGTTLTEE
                     LHRKLKWYTICQTVMQLITEHSNEANERAKQIFQNAIEDDEV"
     gene            complement(3323..4792)
                     /locus_tag="U0342_001056"
     CDS             complement(3323..4792)
                     /locus_tag="U0342_001056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DHA2 family efflux MFS transporter permease
                     subunit"
                     /protein_id="HEM2422410.1"
                     /translation="MNMKAASTSVKRNGILIVMLMGAFVTILNQTLMNVALPSIMKDF
                     GITASQGQWLSTGFMLVNGVMIPMTAFLIERFTTRQLYLFAMITFAIGTAIGGFATDY
                     TMLIAGRMVQAIGAGIVMPLLTVVVLNLFPMERRGRAMGLIGLAMNFAPAIGPTLSGW
                     IVQQYDWRNLFFIIIPFAILDIVVAIFLLKNVGKRTFPKLDILGVIMSTVGFGSLLLG
                     FSNAGDHDWLTWKVAGFIILGLVVLGIFIRYQTSNKAPLLNFRVFKYPTFALTTAISF
                     FVVMGLFGGMLLLPIFLQTVRGFSPLESGLVLLPGALVTAILSPVTGVMFDRFGAKYL
                     SLVGLIIMAGSTFMFTNLDESTTLTFIIIVQTIRSAGMAMVMMPLQTAALNSLPLKLA
                     SHGSAMFNTMRQVAGSIGTAALITVMSKSAASFATKLGPADVIGKTKTDIANHVLIHG
                     IETAFLVAGILSVVACVLALFIQKNRSAMDPIVTKTEKA"
     gene            complement(4789..5229)
                     /locus_tag="U0342_001057"
     CDS             complement(4789..5229)
                     /locus_tag="U0342_001057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2422411.1"
                     /translation="MDEKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIREL
                     QKESELTLGELAERMKLGKSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATK
                     AAETYHVFFNRLEPILEIGEERLKEMLEMHREIITILEREGARD"
     gene            complement(5451..6320)
                     /gene="dat"
                     /locus_tag="U0342_001058"
     CDS             complement(5451..6320)
                     /gene="dat"
                     /locus_tag="U0342_001058"
                     /EC_number="2.6.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-amino-acid transaminase"
                     /protein_id="HEM2422412.1"
                     /translation="MKVLVNNHLVEREDATVDIEDRGYQFGDGVYEVVRLYNGKFFTY
                     NEHIDRLYASAAKIDLVIPYSKEELRALLEKLVAENNINTGNVYLQVTRGVQNPRNHV
                     MPDDFPLEGVLTAAAREVPRNEQQFVQGGPVITEEDVRWLRCDIKSLNLLGNILAKNK
                     AHQQNALEAVLHRGEQVTECSASNISIIKDGVLWTHAADNLILNGITRQVIIAVAKKN
                     GIPVKEADFTLTDLREADEVFISSTTIEITPVTHIDGVQVADGKRGPITAKLHQYFVE
                     EIVQACGELEFAK"
     gene            complement(6433..7845)
                     /gene="pepV"
                     /locus_tag="U0342_001059"
     CDS             complement(6433..7845)
                     /gene="pepV"
                     /locus_tag="U0342_001059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dipeptidase PepV"
                     /protein_id="HEM2422413.1"
                     /translation="MTEINWQKEVESRKDDFLEDLKGLLRIPSVRDDSKKTEDAPFGP
                     DVKRALDYMIELGKKDGFTAKEVGNVAGHLEYGQGEELVGVLGHVDVVPVGDGWTNGP
                     FEPTLRDGKLYARGVADDKGPTIAGYYALKIIKELGLPLSRRVRIIVGSDEESGMSCV
                     ERYFETEEQPTLGFVPDAEFPIIHAEKGISELDVSFKDGEASGEAAFRLLSVESGERY
                     NMVPDHATAILEDVKDFDKVASAFKTFLANHPVEGTLEENGKSVKINIVGKSAHAMEP
                     NNGVNAGLHLVAFLGKFKLTGAANDFVTFGRDYLFGDSRAVKLGISYEDEESGELTMN
                     VGVIRYDVAEGGKYGLNFRYPVTANMDKLKNKMQTVVYEYNAQYTHYEDSKPLFVPKD
                     HPLIQVLQEVYTKQTGEEATLLAIGGGTYARHMETGVAFGALFPGREDTMHQKDEFSY
                     FDDLLKATAIYAEALYKLAK"
     gene            complement(7920..8333)
                     /locus_tag="U0342_001060"
     CDS             complement(7920..8333)
                     /locus_tag="U0342_001060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM2422414.1"
                     /translation="MKPIYPAVKAVIVKDGKFLALKKKGVEGEVFELPGGRMNYGETH
                     GEALFREVYEETKLQVQPFILYDTWEFFHEDFQISGVIYLVEMPEGGEIELSDEHEEY
                     RFLPLEKESLNVMDIVFSSRMERWDFEAIKGFMRK"
     gene            8438..9268
                     /locus_tag="U0342_001061"
     CDS             8438..9268
                     /locus_tag="U0342_001061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-hydrate dehydratase"
                     /protein_id="HEM2422415.1"
                     /translation="MKKITPKAMCAWIPKREDETHKGDYGRVLIVAGNKQFGGAAIMA
                     AEACVKSGAGLTTVASDSVNRPALQTRIPECMFIDYENISSLSEQISQFDTILIGPGL
                     GLDAYAEEIFRLVLEKSTEQQQVIIDGDGITIYAKGENPHPAAKLTFTPHAGEWERLK
                     VLAPDAVTPTDVALAIDATIVLKGHRTKVYSGESAWQNMYGTPAMATGGMGDTLAGTI
                     CGLMAQTEKPITGTLAAVFLHSYIGEILAKKRYVVLPTEIAEELPTYLKIFSETDEHA
                     "
     gene            complement(9306..9959)
                     /locus_tag="U0342_001062"
     CDS             complement(9306..9959)
                     /locus_tag="U0342_001062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatase PAP2 family protein"
                     /protein_id="HEM2422416.1"
                     /translation="MKKTPFIISGIALLGFIFFMTGVMTGAKWIQHFDDYWNSIIRVG
                     ITNTKTTVISYLTDIGGVATICILTAVIVVIFVVIRKVDMAIWFGGIVLIGGALIPSI
                     IKNIVQRPRPTYKLIEQGGFSFPSGHSTGSTVFYGMLAFLLILYVSRRWLRFTIGILA
                     FGLVIFIMYSRVYLGVHFPSDVVAGFLIGNAALFSGIGCYFIWNQKLALWASRFKKA"
     gene            complement(9969..11582)
                     /locus_tag="U0342_001063"
     CDS             complement(9969..11582)
                     /locus_tag="U0342_001063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM2422417.1"
                     /translation="MGSKLLRGTFILTLGTLISKVLGILYVIPFYAIIGGDEPALLYN
                     FGYVPYQLFLSIATAGIPLAVAKYIAKYNAMEEYAVGRRLFKTGVYLMIFSGIVCFLA
                     MYGLAPTLARMQQLEGGYSLADGIQVIRAVSFALLIIPVMSLLRGFFQGYNSMGPSAV
                     SQVLEQVVRIMFLLAGTFIVMYVLDGNVVTAISIATFSAFVGAFASLLLLLWYFYKRK
                     PGLDRMLLEDRGTVKISIPTLYKDIILSAIPFIIVGSATSLYQLIDQFTLGRVLEYIG
                     ITPELVNSYVAIINFDVQKLIMIPGTLAIAFSMALVPLVTGAYVRKEYAQVKRQLNDV
                     FQILLFLTIPACFGIAMLARPLFTVFFSPSDNGTALLQLFAPIAILFSLFSVSAAVLQ
                     GIDEQRFTVLGLLLGLLAKSVLQMPLIMLFEAKGSIIATGIGYAVSCIFMLLIIKKYV
                     RFSFKVILRRTVLFFGMTALMGLVVIALYIMMSNFVSTDRKIPALMITIVCGGVGAIF
                     YGYMAFKLHLSDKLFGPRGTRLREKLRIR"
     gene            complement(11693..13306)
                     /locus_tag="U0342_001064"
     CDS             complement(11693..13306)
                     /locus_tag="U0342_001064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM2422418.1"
                     /translation="MSSKLMRGTAVLTAGTLLSKILGILYVIPFYWIAGGEQATILYQ
                     YGYVPYQIFLNIATAGVPLAVAKYISKYNSLNEYALSQRLYRSSTYLMIFTGIVSFLI
                     MYIFAPILAGMQEVSGGTSIEDITTVIRAVSFALLIIPVMSLLRGYFQGFHSMGPSAV
                     SQVIEQIARIVFLLASTYIVLHLIGGSLVTAMSLATFAAFVGAFFSLICLIWYYRKRK
                     PGIQKMIAGSDNKLRVSTFHLLKEISISAVPFIIVGMAMSLYQQIDLFTFARVLTYDG
                     MDGKTAEDLLSIFNFSVQKIIMIPGTLALAFSMTLVPLVAASFHKGRIREVHHHLTAV
                     FQVLLFLVVPACLGIALLADPLYTIFYGYNADGSMLLQFFAPFAIFFSLFSVTAAILQ
                     GIDEQRYTVLSLLLGLLTKSVLQMPLILLLGAKGGALATGLGYIVSVVFTVFIIKKYA
                     KYSFKYLFRRLILILGISAVMLLSVWLIYHGLILFLNPHARLTALVIVFVSAGFGAYI
                     YAFLAAKAGLLNYILGDRMYKIRKKLHLI"
     gene            complement(13391..13828)
                     /locus_tag="U0342_001065"
     CDS             complement(13391..13828)
                     /locus_tag="U0342_001065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422419.1"
                     /translation="MSVEVKPEHARMLNNTKNVTLGIAIVSTIQAVLSAVSIVGLFAL
                     QQRKEVLANAHATAVVQNTIMTTTIMAVICIAFTIMLFLSFNKLRKGIIITPLVYYLY
                     AAFTILGVILSMINSGVNFVSLILPAVLLALSVTCILNLRRMR"
     gene            complement(13899..14672)
                     /locus_tag="U0342_001066"
     CDS             complement(13899..14672)
                     /locus_tag="U0342_001066"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit alpha"
                     /protein_id="HEM2422420.1"
                     /translation="MTKTLTNKLAKKDHAAVVTYIMGGDGGLDNLEEQLLFLEKSGVS
                     AIEIGIPFSDPVADGPIIQLAGLRALKEQVSLEAILNKLARSKVQIPLIIMSYINPIF
                     HLGIPKFVELVQKTPVKGLIIPDLPYEHQTLITPELQGTDIALIPLVSLTSPKERLEE
                     IAKQAEGFIYAVTVNGTTGVRSEFDAHIDNHLAYLKSISPVPVLAGFGVSSIEHVEKF
                     AHVCDGVIIGSKVVQMLHEEKTAELGAFLQKAAEVRIEN"
     gene            complement(14665..15867)
                     /gene="trpB"
                     /locus_tag="U0342_001067"
     CDS             complement(14665..15867)
                     /gene="trpB"
                     /locus_tag="U0342_001067"
                     /EC_number="4.2.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465153.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan synthase subunit beta"
                     /protein_id="HEM2422421.1"
                     /translation="MTYQAPDENGFYGKFGGRFVPETLMKAVKELDEAYRASKTDPAF
                     QKELNYYLKEYVGRETPLYFAEQLTAHAGGAKIYLKREDLNHTGAHKINNTIGQALLA
                     RQMGKQKVVAETGAGQHGVATATVAALFNMECTIFMGEEDVKRQSLNVFRMELLGAKV
                     VSVKAGSRTLKDAVNEALRFWVANVEDTHYIMGSVLGPHPFPEIVRDYQSVIGIEARK
                     QHLEKEGKLPDAIVACVGGGSNAMGLFYPFVDDVSVQMHGVEAAGHGLETEFHAATIS
                     KGEIGILHGAMMDVLQDENGQILEAFSISAGLDYPGIGPEHSFFRDLGRAAYHSVTDD
                     EAVEAFQLLCRTEGIIPALESSHAISYAVKLASQMRPEESMVVCLSGRGDKDVNQLKE
                     RLEGQIND"
     gene            complement(15870..16478)
                     /locus_tag="U0342_001068"
     CDS             complement(15870..16478)
                     /locus_tag="U0342_001068"
                     /EC_number="5.3.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosylanthranilate isomerase"
                     /protein_id="HEM2422422.1"
                     /translation="MIVKICGLKKAVDVAAAVDNGADMIGFVFAKSKRQVTVEKAHEL
                     AKNIPADVKKVGVFVNPTEEELTAAIKGVPLDIVQLHGQEPAKQANRTDAKVIKAFPV
                     KDGKLPTNINDYPNAYILLDAPAEEYEGGSGKTFDWDKINRDMLTKNKLIIAGGLNAQ
                     NVQEAIKRFEPYAVDISSGVETNGEKDPEKIKCFIKTAKGVE"
     gene            complement(16475..17233)
                     /gene="trpC"
                     /locus_tag="U0342_001069"
     CDS             complement(16475..17233)
                     /gene="trpC"
                     /locus_tag="U0342_001069"
                     /EC_number="4.1.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="indole-3-glycerol phosphate synthase TrpC"
                     /protein_id="HEM2422423.1"
                     /translation="MTFLEEILAQKAVEVADMPLEKVAEKRKTYSFYEFLKANTSTMQ
                     LIAEVKRASPSKGEINIGVNPVLQAKSYQAAGAGMISVLTDPVFFKGSIEDLREVAKN
                     VEIPVLCKDFIISEKQLIRARNAGATVVLLIISALTEEMLIALFEQALALDLEVLVEV
                     HDQKELAVAQKIGAKLIGVNNRNLHTFEVDIAVSERLASDFSSDACFISESGFRTAED
                     VARVSQKYNAVLVGEALMREATPEAAAKSLKVTR"
     gene            complement(17230..18249)
                     /gene="trpD"
                     /locus_tag="U0342_001070"
     CDS             complement(17230..18249)
                     /gene="trpD"
                     /locus_tag="U0342_001070"
                     /EC_number="2.4.2.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate phosphoribosyltransferase"
                     /protein_id="HEM2422424.1"
                     /translation="MEILLQKVYDQENLSKEEMTMIATEIFEGRLSKTKIAAFLMALK
                     VKGETAEEMAGIAQAMQRVAIQVAFPAGTAMDNCGTGGDKSNSFNISTTSAFVLAAAG
                     IPVAKHGNRSISSRSGSADVCQELGIDINMRPEDMTYLLEKVGIAFLFAPHVHPNMKY
                     VMDVRKELGTPTIFNLIGPLTNPVHLETQLMGIYRRDLLEQTAEVLGQLGRKRAVVLN
                     GAGFMDEASLAGENHYALYENGEVHLYTLRPEDVGLTSYPLEAITGGEAKENAAILRS
                     VLDGEPGAYLDTVLLNAGFGLFANGKVTTVQEGVDLARDLIRSGLAKQKLADLITYQK
                     EVLAK"
     gene            complement(18221..18826)
                     /locus_tag="U0342_001071"
     CDS             complement(18221..18826)
                     /locus_tag="U0342_001071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465157.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminodeoxychorismate/anthranilate synthase
                     component II"
                     /protein_id="HEM2422425.1"
                     /translation="MILLIDNYDSFTFNLEQYLAEFSEVVVKRNDATDLMEMAALADG
                     IVLSPGPGKPSDAGLLEEVVAKFAKEKPLLGICLGHQAIGEVFGGDVKRAAKIRHGKV
                     STMRQTAGAIFANLPEEMPVMRYHSLIVDKNTLPQVLEVLAVATDDAEVMAMKVKDYP
                     VYGLQFHPESIGTNDGKQMMENFIHIVEGARENGNLTTKSI"
     gene            complement(18823..20187)
                     /gene="trpE"
                     /locus_tag="U0342_001072"
     CDS             complement(18823..20187)
                     /gene="trpE"
                     /locus_tag="U0342_001072"
                     /EC_number="4.1.3.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465158.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anthranilate synthase component I"
                     /protein_id="HEM2422426.1"
                     /translation="MRKTKKIDADTLTAILAFQRLSGTGKSLLEGAAKDAEAGRYSII
                     AINPVHEIKVYQHDYYIDGIHQVVADPLKEIELFIEKAKEDEADLPLDSGAIGYVGYD
                     VIALYENLGEIPVETRDMPDIRFYVYESFVIMDHQAEELILVQDNCYSGRSEAELDKA
                     LELMFTELTTPKKEEHKAVHVPKMTYKSNYTKEEYMGLVKKAKTYIQEGDFFQIVLSQ
                     RLEADFTVTPFDYYRKLRLLNPSPYLYFIDFGDTVLIGSSPESLIKTKGRTVITNPIA
                     GTRRRGATKQEDELLASELLSDEKELAEHRMLVDLGRNDIGKIAETGSVHVPVYLTIE
                     RYRFLMHLVSVVEGTLKPGLTAMDALRSTLPAGTVSGAPKIRAMERIYEWENVKRGPY
                     AGAVGYLTKNGDSDFALSIRTMVLHNGKAYVQAGAGIVYDSDPESEYLETLQKAKALL
                     EVGE"
     misc_binding    complement(20255..20481)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     misc_binding    complement(20530..20771)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
BASE COUNT         6328 a         4620 c         3468 g         6531 t
ORIGIN      
        1 taaaaagaat aggaaacact agggaggaaa agcgatgaac tggaaagctt tcattgcagg
       61 cgttggagca ggagcagcgg ctggacacct tgtttatcat tatttactta gcgataaaac
      121 aatttctggg gacgtcatct tagaaaaggt aaaagatgca ttcaagcaag aaggaccaat
      181 cgaaggttct tggattcaac ttaaaaaaca acattacaaa aaattcgcga ttgatacttt
      241 cgtttaccac ggcggaatca cttgtattcg cgaaggcgag aagaagcaat tcgaatttat
      301 cgcagacgct aacacaggaa caatcatcga cgtatattta gcttaaaaaa taaaaacgat
      361 tccccaagtg gggagtcgtt ttttagcgga taaaactatc tattttcttt ttaattacca
      421 cttcatctgt ttcaccttgt tcaattaact ccttcatttg ttctgtgtag attaattttg
      481 cggcagcatc catcgctttt ttcaccgctg ctatttgttg cataatagtt tctaaatcac
      541 gctcttcttc tgtcatcgtt tttatagaac gtacatgtcc ttctatctta gcgaatcgcg
      601 ttaccagcgc tttcttttgc tcgatttcca tatatacccc cttatagtat accacacgac
      661 aaccccctac ccaggatatc atattggcta ttttaaagcg tttataaata caattataac
      721 acaaaataaa aataccctca aaaaaaagaa gtgacttctc acttcttaat ttcgctgttc
      781 tatttttaat tcggcttcta tttttccatt tccgtccatt tgaactgctc gaaatctggc
      841 gtcatggtat gataaaaacc aataattttc accaaaagtt tgtttaaaaa tttcttgttt
      901 ggcagagata gaagtcattg gataatcatc ataagcagtg acccaaagca cattttgatg
      961 cgcaaatgtc gggaaaatat ccgccatatg tatcgctttt tctccgtccg attctatcca
     1021 tacaactgaa tgcccattac tatgtccacc tgtgtgcgtc attttaatcg catcgttgaa
     1081 ttctttttct ttggtaaatg tatgaatttg tcctgctatc gtttgccagt tttcttgcca
     1141 gtatgttgct tttgaacgaa tgtttgggtg tttcatttcc tcccattccg ttttggaagt
     1201 ccagatttcc gcattgggaa agatggaata aaaactcccc tcttccgaaa caccggtcag
     1261 gcctaacaca tgatcgaagt gcaaatgcgt catcaaaaca aaatcaatgt cttctggagc
     1321 gatagataat tgcgccaaat cttccagtac aaacgattct tccgtcacac cgtaattccg
     1381 tttttgtttt tctgtaagcc gtctgttccc tagcccgcta tcaattaaat aatttttccc
     1441 taagtactga aaaaacatcg gatcggttac gttagctaat tgatttttgt catttgcggg
     1501 atattttttc tcccataaag gttttggtac aacgccaaac attgcgccac cgtcaaaatg
     1561 agtataccct ccgcgtaacc aataaatctt tatttttcca atttgaatgg aatccacttt
     1621 taacgcctcc aattaaaaat aaaaaccaga tgcagcagat gcatctggtt atccttgtta
     1681 atttctatca aattttgctt caagacgata gatggggaat cctttagctg aaaatttttc
     1741 ttcgtattca gttttaatat tcccttcgta atcgctatta tgcaggtcaa gagatacaaa
     1801 agttaataac atattgtatt ctgagaaagc tactagcgaa tattcgaaca aactgcgatt
     1861 atcggttttg aaatgaatct cccccgcttt aggtagcagt cgctcataaa tagttaagaa
     1921 cgttggattc gttagtctac gttttgtatg gcgttttttc ggccatggat cggagaagtt
     1981 taaataaatt tgtgctattt ctcctttttc aaaacattct tctagtaatt tagcatctct
     2041 agcaactaat cgtaaattag aaacgtctgc ttcaatcgct ttatcgagcg ccgaaacgag
     2101 cacgctttcg atcatttcga taccaatata gttaatttcc ggatttgctt ttgccatgcc
     2161 actaataaat tgacctttac cggaaccaat ttcgatatgg attggattat catttccgaa
     2221 tacttcacgc cactgacctt tgaaatcttc tgggtttttg atgtaaattg ctgggaattc
     2281 tttcaatcta tcttttgccc atggtttatg ttttacacgc atctttcttt acacctcatc
     2341 atcttctatt gcattttgaa aaatttgttt tgctcgttca ttggcttcat tcgaatgctc
     2401 ggttatgagt tgcataaccg tttgacaaat tgtataccat tttaatttgc gatgtaattc
     2461 ttcggttaat gtggtgccgt aattagagag ccaacttacc caatcttttc gcggaatata
     2521 ttggtataaa atcattccga tatcattcgc agggtctgca agcatcgcac catcccaatc
     2581 aactagaaac agttcgtttt cttcagaaat aatccaatta ttatggttaa catctccgtg
     2641 acaaactaca taatcgttcg tctgagcagc agagagattc tgttctaaat agcggattgc
     2701 tgctattatt tctttcgata gctcgttatt agcttttgtg tttactttta tgagactcaa
     2761 aagttgatct gcagaaaaat agcagttttc gattttcgct agcatgtgtt gcaagttttc
     2821 tgaatggtgg attttagcta atagttttgc cactcgcggt ccaaccattt cttcacgtgt
     2881 caaaatatgg caattcaccc atttttgagc agtgatgaca tctccattct ctacgcgtct
     2941 cgtccaaact aattttggaa cgatattttc tacagaaagc gcagctaaaa aaggcgaaga
     3001 atttcttttt aaaaagaatt tttcgtcttc atgtgttgca acgaatgcct ggccagtttc
     3061 ccctccggcc ggagctatgt catattctct cccaaaaaag ttatctttca tctacatgca
     3121 caccttttat tagctctttg caacttcatt atccctcgtt tatttcactt ccgaacaaat
     3181 aggtaactat tcatgatttt acttctctta gccttactag tcaagtcaac atatgttcgt
     3241 tatctagatt tttttacaaa tttactttat ttacacaaaa aaagtgcatt ccatcaaaat
     3301 ggaacacact tttttcatta ttttatgctt tttcggtttt agtaacaatt ggatccatgg
     3361 cacttctatt tttttgtata aatagtgcta ggacacaagc aactacagaa agaattccgg
     3421 caactaaaaa ggccgtttca attccgtgga taagaacatg gttggcaata tcagttttag
     3481 ttttgccaat cacatcggct ggtccgagct tagtagcgaa actcgcagca cttttagaca
     3541 taaccgttat aagcgccgct gttccgattg aaccagcaac ttgacgcatg gtattaaaca
     3601 ttgctgaacc atgagatgct agttttaatg gaagcgagtt gagcgctgct gtttgcagtg
     3661 gcatcataac catcgccatc ccagccgaac gaatcgtttg tacaataata ataaaagtca
     3721 atgtagtaga ttcatccaag ttggtaaaca tgaaggtcga tcccgccatg ataattaagc
     3781 caacaagtga taaatattta gccccaaaac ggtcaaacat caccccagtt acaggtgaaa
     3841 gtatcgccgt gacaagcgca cccggcaaga gaacaagccc cgattctagt ggtgaaaatc
     3901 ctctaacagt ttgtaagaaa attggtagta ataacatgcc accaaaaagg cccattacaa
     3961 caaagaaact aatggctgtt gtaagcgcaa aggtaggata tttaaatact ctaaagttaa
     4021 gtagtggcgc tttgttgctt gtttggtaac gaataaatat tcctagcact actagaccaa
     4081 gaataataaa tccagctact ttccatgtta accaatcatg gtctccagca ttactaaatc
     4141 ctaataataa actaccaaac ccgactgttg acatgataac cccaaggata tcgagtttcg
     4201 ggaaagttct ttttccgaca tttttaagta agaaaatcgc tacgacaata tcaagaatcg
     4261 cgaaaggaat aataataaag aataaattgc gccaatcata ttgttgaaca atccaccctg
     4321 aaagtgtcgg accaattgct ggagcaaagt tcatagcaag accaattaag cccattgctc
     4381 gccctcttcg ttccatcggg aataagttta agaccacaac agtaagaagt ggcataacaa
     4441 tcccagcccc aattgcttgt accatacggc cagcaataag catcgtataa tctgtcgcaa
     4501 atccgccaat tgcagtacca atcgcaaagg taatcatcgc aaataagtaa agctgacgcg
     4561 ttgtaaatcg ttcaattaaa aaggccgtca ttggaatcat gacaccatta accaacataa
     4621 atccagtcga taaccattgc ccttgactgg ctgtaattcc aaaatctttc ataatacttg
     4681 gtagcgcgac attcatcaac gtttggttga gaatcgtaac aaaggcgccc ataagcataa
     4741 caatcaaaat accattacgc ttcactgatg tacttgctgc tttcatattc aatctcgtgc
     4801 accttccctt tctaaaatgg taataatctc tcggtgcatt tctagcattt cttttaacct
     4861 ttcttcgcca atctctaaga taggttctaa acggttgaag aatacatgat acgtttctgc
     4921 tgcttttgta gctccttttt cagttaattc taagctgagt gcgcggcgat tactttcatt
     4981 tcttgtacgt tttaaaaatc ccgctttcac taatcgatct acaataccag atacagtact
     5041 tttaccaagc ttcattcgtt ctgctaattc gccaagtgtt aattctgatt ctttttgtaa
     5101 ttctctgatt gcaagtaatt gggttgttgt aatctcccta ttcgccgctt cttctgcaag
     5161 cacgtgatgt gtttttcgtt gtacttcgcg aaaagagaaa ataacctctt tcactaattt
     5221 ttcatccatg acttccctcc atattgttcg ctcccaaata tttcgcatgc gaactattag
     5281 ccttttgaat tatacacctc caaaaaaatt tgtcaatcgc ttaaaaccag gcttttcaaa
     5341 ctgaaagcgg agccaatagc gtaatttcaa cggataaaaa agttatataa atttttacat
     5401 aggtgtcaag acgcaaaaaa accttcctaa aaaaggaagg tttctactta ttattttgca
     5461 aattctaatt cgccacatgc ttgaacgatt tcttctacaa aatattgatg aagttttgcg
     5521 gtaataggtc cgcgttttcc gtcagctact tgcactccgt cgatatgggt aactggggta
     5581 atttcgattg ttgtgcttga aatgaatact tcatcggctt cacgaagatc tgttaaagta
     5641 aaatcagctt ctttgaccgg aataccattc tttttcgcaa cagcaataat tacttgacga
     5701 gtaataccat ttaagattaa attatctgct gcgtgcgtcc ataacacacc gtctttaata
     5761 atagaaatat tggaagctga acactcagtt acttgctctc cgcggtgtaa aacagcttct
     5821 aacgcatttt gttgatgtgc tttgtttttt gctaaaatgt ttccaagtaa attcaaactc
     5881 ttgatgtcac agcgtaacca acgaacatct tcttctgtaa ttactggtcc accttgcaca
     5941 aattgttgtt catttcttgg tacttcacga gctgctgctg ttaaaacgcc ttccagcggg
     6001 aaatcatctg gcataacgtg attacgcggg ttttgaacac ctcgagtcac ttgtaaatag
     6061 acatttcctg tattaatatt attttcagca actaattttt caagtaacgc tcgtaactct
     6121 tctttagaat aaggaataac taagtcaatt tttgctgcac tcgcatataa acgatcaatg
     6181 tgttcattat aagtgaagaa ttttccatta tatagacgaa ctacttcata tacaccatca
     6241 ccaaactgat atccgcggtc ttcaatgtca actgtggcat cttctctttc cactaaatgg
     6301 ttatttacta atactttcat ctcaagtctc tccttgcata gttaattttt ggaactatct
     6361 aaaaacttaa tgaaacaaag aaactgccgc aaaactaagc tttgcagcag ttaatttttt
     6421 caattataac ccttacttcg ctaatttgta aagtgcttct gcataaattg cagtagcttt
     6481 taacaaatca tcaaaatagc tgaattcgtc tttttggtgc atcgtgtctt cacggcctgg
     6541 gaatagtgcg ccgaacgcca caccagtctc catgtggcgc gcataagttc cgccaccaat
     6601 tgctagtaaa gtagcttctt cacccgtttg ttttgtatac acttcttgta aaacttgaat
     6661 tagcggatga tcttttggta cgaaaagtgg tttggaatct tcgtaatgcg tgtattgcgc
     6721 gttgtactca taaaccactg tttgcatttt atttttcaat ttgtccatat tagcagttac
     6781 tggataacgg aaattaagtc cgtattttcc accttctgct acatcataac gaataacgcc
     6841 aacgttcatt gttagttcgc cgctttcttc gtcttcatag ctaataccta atttaactgc
     6901 acgggaatcg ccgaataggt aatcgcgacc aaatgttacg aaatcatttg ccgcgccagt
     6961 cagcttgaat ttaccaagga aagctactaa atgaagacca gcgtttacac cgttatttgg
     7021 ttccattgca tgggctgatt taccaacaat attaatttta acggatttgc cgttttcttc
     7081 taatgttcct tctactggat ggtttgctag gaaggttttg aatgcactcg ctactttatc
     7141 aaagtctttt acatcttcta aaatagctgt tgcgtgatct ggaaccatgt tgtaacgctc
     7201 gcctgattct acgctaagta aacggaaagc cgcttccccg cttgcttcac catctttaaa
     7261 agatacatct agttctgaga tacctttttc cgcgtgaatg attgggaatt ctgcatcagg
     7321 aacaaaacca agtgttggtt gttcttctgt ttcaaaataa cgttccacac agctcatacc
     7381 gctctcttca tcagaaccaa caatgattct aacacggcga gaaagtggta atcctagttc
     7441 tttaataatt tttagcgcat agtaacctgc gattgttggt cctttatcgt ccgcaacccc
     7501 acgagcgtat aatttgccgt cgcgtaaagt tggttcgaat ggtccgttcg tccaaccatc
     7561 accaactggt actacatcca catggcctaa aacgccaact agttcttctc cttgaccata
     7621 ttcaaggtgt cctgctacgt ttccaacttc tttcgctgtg aagccgtctt ttttaccaag
     7681 ttcaatcata tagtcgagcg cgcgtttcac gtctggtcca aacggcgcat cttctgtttt
     7741 tttactgtca tcgcgaacac tcggaatgcg aagaagccct tttaaatctt ctaagaaatc
     7801 atctttgcgt gattccactt ctttttgcca attaatttct gtcataattg ttattccctc
     7861 cttcaaactt atcttctcta ttgtaaactg tttttacgta gcttggaagc cggaactccc
     7921 tattttctca taaaaccttt aattgcttca aaatcccagc gttccatgcg cgaagaaaaa
     7981 acgatatcca tgacatttaa actttctttt tctagtggta aaaagcgata ttcttcgtgt
     8041 tcatcggata attcgatttc gccaccttct ggcatttcta ccaaataaat aacaccggaa
     8101 atttggaaat cctcatggaa aaattcccac gtatcatata aaataaatgg ctgtacttgt
     8161 aattttgttt cttcataaac ttctctaaaa agggcttccc cgtgcgtttc accataattc
     8221 atgcggcctc ctggaagttc aaaaacttct ccttctaccc cttttttctt tagtgctaaa
     8281 aattttccgt cttttacgat aactgctttc actgcaggat atataggttt cattttacaa
     8341 aagcctcctt atcatttaag ataaacatga tttatctgtt ctttatttta cccggttgag
     8401 tagataaaag ccagtgtcat aaggaggttt tacaaaaatg aaaaaaataa caccaaaagc
     8461 aatgtgcgca tggattccta aacgcgaaga tgaaacacat aagggtgact atgggcgcgt
     8521 tctgattgtc gctggaaata aacaatttgg tggtgctgct attatggcgg cagaagcttg
     8581 tgtcaaaagt ggtgctggtt taacaaccgt ggcctccgat agtgtcaacc gacctgctct
     8641 ccaaacaaga atacctgaat gcatgtttat tgattatgaa aatatctcga gtctcagcga
     8701 acaaatcagc caatttgata cgattttaat tggtcctggg cttggacttg atgcctatgc
     8761 ggaagaaatt tttcgtttag ttttagaaaa atcaaccgaa cagcaacaag taattattga
     8821 tggtgatggg attactattt atgcaaaagg agaaaatccc catcctgccg cgaaactaac
     8881 ttttacgcct catgctggag aatgggaaag gcttaaagta ttagcgccag atgccgtaac
     8941 accaactgat gtagcgcttg ctatcgacgc aacgattgtt ttaaaagggc accgtacaaa
     9001 agtgtattct ggcgagtctg cttggcaaaa tatgtacgga acaccagcaa tggcaacagg
     9061 tggtatgggt gatacgcttg ccggtacaat ttgtggctta atggcgcaaa ctgaaaaacc
     9121 gattaccggc actctagccg cggtctttct tcacagctat atcggcgaaa ttttggctaa
     9181 aaaacgctat gtggtacttc caaccgaaat tgccgaagaa ttaccgactt acttgaaaat
     9241 ttttagcgaa actgacgaac atgcttaata aaaaatcctc cctttttgaa agagaggatt
     9301 tttttctatg cttttttaaa tctactcgcc cataatgcta atttttgatt ccaaatgaag
     9361 taacatccaa tgccactgaa aagtgctgca ttgccgatta agaatcctgc aactacatcg
     9421 cttggaaagt gcacccctaa gtaaacacgc gaatacatga tgaaaataac cagaccaaag
     9481 gctagaatgc caattgtaaa tcgaagccat ctgcggctca cgtatagaat taacaagaaa
     9541 gcaagcatac cataaaatac cgtagaaccg gtcgaatgtc cacttggaaa actaaatcca
     9601 ccttgttcga ttaatttata cgtaggcctt ggtcgttgaa cgatattttt aataattgac
     9661 gggataagtg ctccaccaat taaaacaata ccaccaaacc aaatcgccat atctactttt
     9721 cgaatgacaa caaatataac gacaatgact gctgttaaaa tacaaatggt cgcgactccg
     9781 ccaatatccg ttagataaga aatcaccgtt gttttcgtat tcgtaatgcc tacacggata
     9841 atactgttcc aataatcatc aaaatgttga atccactttg caccggtcat aacgcctgtc
     9901 ataaagaaaa taaatccaag gagagcgata ccgctaataa taaatggtgt ttttttcata
     9961 taatcctcct agcgaattct taatttttca cgcagtctcg ttccacgtgg cccaaataat
    10021 ttatcggata agtggagttt aaatgccatg taaccataga aaattgcacc taccccgccg
    10081 caaacgattg taatcattaa tgcaggaatt ttccggtctg ttgatacaaa gttagacatc
    10141 ataatataaa gcgcaataac tacaagcccc attaaagccg tcatcccaaa gaaaagtacc
    10201 gttcgccgta aaataacttt gaacgaaaaa cgaacatatt tcttaataat aagtagcatg
    10261 aaaatacaag ataccgcata gccaattccg gttgcaataa tggatccctt tgcctcaaat
    10321 aacataatga gcggcatttg aagaactgat ttagccagta aaccgagtaa taaaccaagt
    10381 acggtaaatc gttgttcatc aatcccttga aggactgcag cagatacgct aaataaggaa
    10441 aataaaatag cgattggcgc aaaaagttgt agtaatgctg taccgttatc acttggcgag
    10501 aaaaacaccg taaatagcgg tcttgctagc atcgcaatcc caaaacaagc tggaattgtt
    10561 aaaaataata aaatttgaaa aacatcatta agttgacgct tcacttgcgc atattctttt
    10621 ctcacataag ctcccgtcac tagtgggaca agcgccatcg aaaacgcaat cgcgagtgtg
    10681 ccgggaatca taatcaattt ttgtacatca aagttaataa ttgccacata agaattcact
    10741 agttccggcg taatgccaat atattccagt acccgtccta atgtaaactg gtcaatcaat
    10801 tgataaaggg atgtagcaga tccaacaata ataaacggaa tcgccgaaag aataatatct
    10861 ttataaagcg tcgggataga aattttcaca gtccctctgt cttctaaaag cattcggtcc
    10921 agtccaggtt ttcgtttgta aaaataccaa agaagtaaaa gtagacttgc aaaagcgccg
    10981 acaaacgcgg agaaagtagc aatactaata gccgttacga cattcccatc aagtacatac
    11041 atgacaataa atgttccagc aagtaagaac ataatccgaa caacttgttc taacacttgc
    11101 gatacagcag aaggtcccat cgaattatat ccttggaaaa agcctcgtag taaactcatt
    11161 accggaataa ttagtaaggc gaaactaact gcacgaataa cttgaatccc atctgctaaa
    11221 ctataaccgc cctccagttg ttgcatccga gcaagcgttg gagcaagtcc atacattgct
    11281 aggaaacaga caatgccgga gaaaatcatt aaatatacac cggttttaaa taaacgtcga
    11341 cctacagcgt attcttccat cgcattatat tttgctatat atttagcaac agccagcgga
    11401 atccctgcag tcgcaatgct taagaataat tgatacggca cataaccgaa attatataga
    11461 agcgctggtt catctcctcc aataatcgca taaaacggaa tcacatacaa tattccgagc
    11521 actttagaga ttaatgtccc tagcgtcaga ataaatgttc ctctgagcag ttttgaaccc
    11581 atcgtctaac ttcctttaca ttaaattata tatccttgtt tactttacca ttaactcttt
    11641 taaaaaaaaa gaacaaaccc aaataaatat cggcttgttc tttacaaaaa gtttaaatca
    11701 aatgaagttt tttacgaatt ttatacattc ggtcccctaa aatatagttt aacagacctg
    11761 cttttgcagc caaaaacgca taaatatagg caccaaagcc ggctgaaaca aaaacaataa
    11821 ctagtgctgt taatcttgca tgtggattta aaaataaaat caagccatga taaatcaacc
    11881 agacactaag aagcatcacc gcactaattc ctaaaataag tataagccgt ctaaataaat
    11941 atttaaacga gtacttcgca tattttttaa taataaaaac ggtgaatact acggaaacaa
    12001 tataaccaag tcccgtagct aatgccccac cttttgcccc taaaagcaaa attaatggca
    12061 tttgcaacac tgattttgtc agtaaaccaa gtaagagact aagaacagtg taccgttgtt
    12121 catcaattcc ttgcaaaatc gcggctgtta cactaaataa cgagaagaat atggcaaatg
    12181 gcgcaaaaaa ctgaagtaac atcgaaccat ctgcattata accataaaaa atggtgtaaa
    12241 gcggatccgc taaaagggca attcctaaac aagctggcac aactaaaaat agtaacactt
    12301 ggaaaacagc cgtcaaatga tgatgaactt cccgaattcg ccctttatgg aaagatgccg
    12361 ccactaaagg cacaagtgtc atcgaaaatg ccaaggctaa agttcccggt atcataataa
    12421 ttttttgaac ggaaaagttg aaaattgaaa gcaaatcttc cgctgttttc ccgtccatac
    12481 catcgtaggt taaaacacga gcaaacgtaa ataaatcaat ttgctgataa agggacatcg
    12541 ccattccaac aataataaat ggcaccgcag atatcgaaat ttcttttaat agatgaaaag
    12601 tcgaaacgcg caacttgttg tcactgccag caatcatttt ttgaataccc ggcttccgtt
    12661 tccggtaata ccaaatgaga caaatcaagc tgaaaaacgc accaacaaaa gccgcaaaag
    12721 tcgctaaact catcgctgta acaagacttc caccaattaa atgtaagaca atatacgtac
    12781 tagcaagtaa aaatacaatt ctcgctattt gttcaattac ttgtgacacg gcagaaggtc
    12841 ccatcgaatg aaatccttgg aaataaccac gaagtaaact cattacagga ataataagta
    12901 atgcaaaact tactgcgcga ataaccgtcg taatatcttc aatactcgtt ccgccactaa
    12961 cctcttgcat ccccgcgagt atcggggcaa aaatatacat tattaaaaaa ctaacaatcc
    13021 ctgtgaatat cattaaatac gtacttgatc tatacaatcg ctgacttaaa gcatattcat
    13081 ttaacgaatt atacttcgag atatatttgg caactgctaa aggtactcca gctgtcgcga
    13141 tatttaagaa aatttggtaa gggacatatc catattgata gagaatcgtt gcttgttccc
    13201 cgccggcaat ccagtaaaat ggaataacat ataaaatccc taagattttt gaaagcaatg
    13261 ttccagcggt aagcacagcc gttcctcgca ttaattttga actcataatt tctgttacct
    13321 cgattgattt tttcttttaa gtctgtctgt taaatcgggt tatgtaaaaa tcattcttac
    13381 actactactt ttatcgcatt cttctaagat ttaaaataca agttacactt aaagcaagta
    13441 gtactgctgg taaaataagc gaaacaaagt tcacaccact attaatcatt gacaaaataa
    13501 caccaagaat agtaaatgca gcgtataaat aatatacaag cggcgtaatt ataatacctt
    13561 ttctaagttt gttaaaagaa agaaataaca taatcgtaaa cgcaatacaa ataactgcca
    13621 taatggtagt cgtcataatc gtattttgaa cgaccgcagt ggcatgtgca ttagcaagta
    13681 cttcttttct ttgttgtaac gcaaaaagac ctacaataga gactgcactt aatactgctt
    13741 gaatagtcga tacaatcgct attccaagtg tgacattttt cgtgttattg agcattctcg
    13801 catgctctgg tttaacttca acagacatcc ttacaactcc tctttaacat tctatacacc
    13861 agactttacc atatttaaag agaaattgta agtagtaatt agttttcgat tcgaacttct
    13921 gcggcctttt gtaaaaacgc tcctagctct gccgtttttt cttcatgtaa catttgcacg
    13981 actttactac cgattattac accatcacat acatgcgcaa atttttccac atgttcaata
    14041 gaagaaacac caaaacctgc gagaactgga acagggctaa tgctttttaa ataagctaaa
    14101 tggttatcaa tatgggcatc aaattcactc ctcacaccgg tagttccgtt aactgttact
    14161 gcataaataa acccttctgc ctgtttcgca atttcttcga ggcgctcttt cggacttgtc
    14221 aatgaaacaa gcggaataag tgcgatatct gtcccttgaa gttctggcgt aatcagtgtt
    14281 tggtgctcat aaggtaaatc aggaataata agccctttca ccggcgtttt ctgcaccaat
    14341 tcaacaaatt tcgggatacc taaatgaaaa atcggattaa tataactcat aataattagc
    14401 ggaatttgca ctttactcct agccaattta tttaaaatgg cttctaaact cacttgctcc
    14461 tttaaagcac gtaacccagc aagttgaata atcggaccgt cggcaaccgg atcagaaaaa
    14521 ggaataccaa tttcaatcgc gcttacacca gatttttcga gaaacaataa ctgttcttct
    14581 aaattatcta agccaccatc gccacccata atgtaagtaa ctacggcagc atgatctttt
    14641 ttcgctagtt tattcgttaa tgttttagtc atttatttgt ccctccaagc gttcctttag
    14701 ttgattaaca tctttatctc cgcgaccaga taaacaaacg accatacttt cttctggacg
    14761 catttggctt gcaagtttga ctgcataact aatcgcgtgc gagctttcga gtgcaggaat
    14821 gattccttcc gtacgacata aaagttgaaa tgcttcaacg gcttcatcat cggtaacaga
    14881 atggtacgct gcacgaccta aatcacggaa aaagctatgc tccggaccaa tacctggata
    14941 atctaagcca gctgaaatcg aaaatgcttc caaaatttgt ccattctcat cttgtaaaac
    15001 gtccatcatc gctccgtgta aaatccctat ttctcctttg gaaatagtcg ctgcatggaa
    15061 ttcagtttct aaaccgtgtc ccgctgcttc cacaccgtgc atttgaacag aaacatcatc
    15121 tacaaatgga taaaataacc ccatcgcatt actcccgcct ccaacacaag caacaattgc
    15181 atcaggaagc ttaccttctt tttccaagtg ttgtttgcgt gcttctattc ctatcacact
    15241 ttggtaatca cgaacaattt ctggaaatgg atgcggtcca agaacggatc ccataatgta
    15301 atgcgtgtct tccacattag caacccagaa tctgagcgcc tcatttactg cgtcttttaa
    15361 tgttctgctt cctgctttca cgctcactac ttttgcacca agaagttcca ttctaaacac
    15421 attgagtgat tggcgtttca catcttcttc tcccataaaa atagtacatt ccatattaaa
    15481 aagtgctgca acagttgcag tcgccacccc gtgttgtcct gcgccagttt ctgccactac
    15541 tttttgttta cccatttgac gtgcgagtaa ggcttgccca atagtattat tgattttatg
    15601 tgcgccagta tgatttaaat cttcgcgttt taaataaatt tttgctccgc ccgcatgtgc
    15661 tgttaattgt tcagcaaaat aaagtggtgt ttctcggccc acatattctt ttaaataata
    15721 gtttaattct ttttgaaaag caggatctgt tttggaagcc cggtacgcct cgtctaattc
    15781 tttcactgct ttcattaatg tttctggtac aaatctgccg ccaaattttc cgtaaaagcc
    15841 attttcgtca ggtgcttgat aagtcattat tattccactc cttttgctgt tttaatgaag
    15901 catttaattt tctccggatc tttttctccg tttgtttcta cgccagagga aatatctact
    15961 gcatatggtt caaagcgttt aatggcttct tgtacattct gagcatttaa tccgccagct
    16021 ataattaatt tgttttttgt aagcatgtct ctatttattt tatcccaatc aaatgttttt
    16081 ccgctgccgc cttcatattc ctctgctggt gcatcgagta aaatataagc gtttggatag
    16141 tcatttatat tggtaggaag tttcccgtct ttcacaggaa aagctttgat tacttttgca
    16201 tctgtgcgat ttgcttgttt tgcgggttct tgtccgtgaa gttgaacaat gtctaatggc
    16261 acacctttga ttgctgccgt taactcttct tcagtaggat taacgaatac cccgactttt
    16321 ttgacgtcag cgggaatatt tttggctaat tcatgtgcct tttccaccgt aacttgacgt
    16381 ttactttttg cgaaaacgaa gccaatcata tctgcgccat tatcgaccgc agccgctaca
    16441 tctactgctt ttttcaatcc acaaattttt acaatcatcg tgtcaccttc aaacttttcg
    16501 ccgctgcttc tggagtcgct tctcgcatta gcgcttctcc aacaagcact gcattatatt
    16561 tttgactaac acgagccaca tcttcagctg ttcgaaaacc tgattcactt atgaaacaag
    16621 catccgacga aaaatcgctc gccagtcttt cacttactgc aatatccact tcaaatgtat
    16681 gcaaattacg gttgttcaca ccaatgagtt tagctccaat tttttgagca acagctaatt
    16741 ctttctggtc atgtacttcc actaacactt ccaaatcaag cgccagagct tgttcaaaca
    16801 gagcaattag catctcttct gtaagtgccg aaataattag caatacaacc gttgctcccg
    16861 catttcgagc acgaatcaat tgtttttcac taataataaa atctttacaa agtacaggaa
    16921 tttcgacatt tttcgctact tctcgcaaat cttcaatcga gcctttgaaa aaaacaggat
    16981 ctgtcaaaac agaaatcatt cccgcacccg cagcttgata agacttggct tgcagaaccg
    17041 gattcacgcc tatattgatt tcccctttag aaggagaggc gcgttttact tctgcaataa
    17101 gttgcatcgt gctggtattt gcttttaaaa attcataaaa cgaataagtt ttccgttttt
    17161 cggctacttt ttctaagggc atgtctgcaa cttctactgc tttttgcgct aaaatttctt
    17221 ctaaaaatgt cattttgcta gcacctcttt ttgataagta attaaatctg ccaatttttg
    17281 tttggctaaa ccacttctaa ttaaatctct tgctaaatcc acgccttctt gtaccgttgt
    17341 cactttgcca tttgcaaata aaccaaatcc ggcatttaaa agcactgtat ctaagtaagc
    17401 tcctggttct ccgtcaagca cactacgcaa aattgctgca ttttctttag cttctccgcc
    17461 tgtaattgct tcgagaggat agctagttaa accaacatct tccggacgca gtgtatataa
    17521 gtgaacttca ccattttcat ataacgcata atgattttct ccagccagag aagcttcatc
    17581 cataaaacca gcgccattta aaacaactgc gcgttttcgt ccgagctggc cgagtacttc
    17641 cgctgtttgc tctaacaaat cacgacgata aattcccatt aattgcgttt ctaaatggac
    17701 cggatttgtg agtgggccaa tcaaattaaa tatcgttggc gttccaagtt cttttcgaac
    17761 atccataacg tacttcatat tcgggtgaac atgtggcgcg aacaaaaagg caattccgac
    17821 tttttcgagt aaataagtca tatcttctgg tcgcatatta atatcaatcc ctaattcctg
    17881 acaaacatca gcactacctg aacgactaga aatacttcta ttcccatgtt tcgcaaccgg
    17941 aatccccgca gccgcaagaa caaaagccga cgtagtacta atattaaaac tattggattt
    18001 atctccacct gttccgcaat tatccatcgc tgtcccggct ggaaaagcga cttgaatagc
    18061 cactcgttgc atcgcctgcg cgattcccgc catttcttct gccgtttctc ctttcacttt
    18121 gagcgccatt aaaaaagcag ctattttcgt tttcgaaagt cgtccttcaa aaatttctgt
    18181 tgcgatcatt gtcatttctt ctttggataa attttcttgg tcatatactt tttgtagtaa
    18241 gatttccatt ttctcgcgct ccttccacta tatgaataaa gttttccatc atttgttttc
    18301 catcattcgt accaattgat tcaggatgaa attgcaaacc gtaaaccgga taatctttta
    18361 ctttcattgc catcacttcc gcatcgtccg tcgctactgc taacacttcc aaaacttgtg
    18421 gcaacgtgtt tttatctact attaaagagt gataacgcat cacaggcatt tcttccggta
    18481 aattagcaaa gattgctcca gcggtttgcc gcatagtaga aactttcccg tggcggattt
    18541 tcgccgctct ttttacgtct ccgccgaata cctcaccaat cgcctgatga cctaaacaaa
    18601 ttccaagcaa aggcttttct ttcgcaaatt ttgcaactac ttcttctaaa agaccagcat
    18661 cacttggttt tcctggtccc ggtgaaagaa ctatcccatc agctaaagcc gccatttcca
    18721 ttaaatcagt cgcatcattc cgtttcacaa ccacttcact aaattctgct aaatactgtt
    18781 ctaaattaaa tgtaaaagaa tcgtaattat caattaatag aatcattctc ccacctccaa
    18841 aagtgccttt gctttttgta atgtttctaa gtattcgctt tctggatcgg aatcatagac
    18901 aattcctgca ccagcttgaa cataagcttt tccgttatga agtaccattg ttctaatcga
    18961 aagcgcgaaa tccgaatcac catttttagt taaataacca accgcaccag catatgggcc
    19021 acgttttaca ttttcccatt catagattcg ctccatggct cttattttcg gtgctccgct
    19081 aactgtacca gccggaagcg tcgaccgaag agcatccatt gcagtaagtc cgggttttaa
    19141 ggttccttct actactgaaa ctaaatgcat taagaaacgg tatctttcaa tagtaaggta
    19201 aacaggcaca tgcactgatc ccgtttcggc gattttccca atatcatttc gtccaagatc
    19261 tactaacatt cggtgctctg ctaattcttt ttcatccgac aacaattccg aagcgagtag
    19321 ttcgtcttct tgtttcgttg ccccgcgccg tcttgttcct gcaataggat tcgtaattac
    19381 cgtccgccct tttgttttga tcaaactttc tggggaagat ccaatcaaca ccgtatcccc
    19441 aaaatcaatg aaataaagat aaggagaagg atttaataaa cgtaatttcc gataataatc
    19501 aaatggtgtc acggtgaaat ctgcttctag tcgttgcgag agaacaattt gaaagaagtc
    19561 accctcttgg atataggttt ttgctttttt cactaacccc atgtactcct ctttcgtgta
    19621 gttactcttg tatgtcattt tgggaacatg gacagccttg tgctcttcct ttttcggcgt
    19681 tgtaagttca gtaaacatta attcaagcgc cttatctagt tccgcctcac ttcttcccga
    19741 atagcaatta tcttgcacta aaataagttc ttccgcctga tgatccataa tcacaaaact
    19801 ttcatataca taaaaacgaa tatctggcat atcccgagtt tctactggaa tttcgcctaa
    19861 attctcataa agcgcaatga catcataacc aacataacca attgcacctg aatcaagcgg
    19921 taaatctgct tcatcttctt ttgctttttc gataaataat tcaatttctt ttaaaggatc
    19981 tgcgacaact tgatgtatac cgtcgatata ataatcatgt tgatatactt taatttcatg
    20041 gactggatta atggcaataa tcgaataacg tccagcctcc gcatctttcg ccgccccctc
    20101 tagcaaactt tttcctgtac ctgaaagtct ttgaaacgcc agaatagccg ttagtgtgtc
    20161 agcatctatt tttttcgttt ttctcatctt aatcatccct tcttctctac taaaataaaa
    20221 aaagtcctct gaaaaagcgc aaaattatgc tttttcagag gacgagttat cgcggtgcca
    20281 cctcatttta gggaattctc cctatctcag tactgcaata tttgcagtcg ctctataacg
    20341 ggagcacccg ttcaccccta cttaatttca aggtatcacg cacaaggccc attcctaatt
    20401 catctattta ttagctccca ccaaacgcta actctcttta aaaatcgatg aaaaagtact
    20461 attcttgttt catgttttcg ttttataaaa ttaaaaaagg gcctctctcc aagcctagca
    20521 aatatactag acaaggacga gagacccgtg gtaccacctt gattaactgt aaaaacagtt
    20581 cacttaatcc atccaaattc cgaatgggtg ccttgtgtaa cgataaggcc taatcgctgt
    20641 atcctactaa gaaaatcctt tcagatcaga gctcagaagt ccattcacat catgtctgct
    20701 actgactttc accaaccgtc agctctctag aaactttcat catgctactt actcttcttc
    20761 aatgctatca ttttttactt gttttcatct tacataagaa aatcacgaaa gtcaagaaaa
    20821 taaaactact ttatactaaa aaggttccaa aacgataatt aataaacaag taagaaaaaa
    20881 gaactatctc cctataatat atttcacccc agaaaaagta tgctattttc tctattataa
    20941 taaatat
//
LOCUS       DASEAA010000035        20423 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.035, whole genome shotgun sequence.
ACCESSION   DASEAA010000035 DASEAA010000000
VERSION     DASEAA010000035.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20423)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20423)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20423
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.035"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(30..191)
                     /locus_tag="U0342_001073"
     CDS             complement(30..191)
                     /locus_tag="U0342_001073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic lactone autoinducer peptide"
                     /protein_id="HEM2422427.1"
                     /translation="MKNMNKSVGKFLSRKLEEQSMKVADSSMSKACFMFVYEPKSPFV
                     KMQEKNENK"
     gene            complement(175..789)
                     /locus_tag="U0342_001074"
     CDS             complement(175..789)
                     /locus_tag="U0342_001074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory gene regulator ArgB-like protein"
                     /protein_id="HEM2422428.1"
                     /translation="MSNFTAKVPLSERMADVLISKDRWKDDEEGYLKVKYGLEIILIN
                     VMKFALVYGIALVTGLLLQTVTVHLSYLWLRRYSFGLHATKTLNCTLISLMMFVLAPF
                     VFQNIPSNNWIVLGTFGFILLNMFLFAPADTESLPLIGEEHRKTLKRKAMIGTLILTG
                     IALLIPFAEMKTLIMVGSLFQVISINPLTYKLLKRRYRNYEKYE"
     gene            complement(1046..1657)
                     /locus_tag="U0342_001075"
     CDS             complement(1046..1657)
                     /locus_tag="U0342_001075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PepSY domain-containing protein"
                     /protein_id="HEM2422429.1"
                     /translation="MYRKLATVGMTVLLVGALSACSFNDDKDTSSNNSSNETTSSKSS
                     NNESSSDSLQNKSFDMSYEDAINAFKDKHSDAEISSVELEKSLGKYVYKVDGISNDNE
                     YEMKFNAETKEQLSDETDRLDREDAGGVEKENEKLSLDGIKSPKEAMDKAVSEQAGDV
                     TSWKIERELDTTYYEVTVKQDNNKYEIKLNAKTLEILQTEQDD"
     gene            complement(1810..2049)
                     /gene="rpsR"
                     /locus_tag="U0342_001076"
     CDS             complement(1810..2049)
                     /gene="rpsR"
                     /locus_tag="U0342_001076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S18"
                     /protein_id="HEM2422430.1"
                     /translation="MAGGRRGGRRRKKVCYFTSNGITHIDYKDVELLKKFVSERGKIL
                     PRRVTGTSAKYQRKLTVAIKRSRQMALLPFVAEEK"
     gene            complement(2093..2629)
                     /gene="ssb"
                     /locus_tag="U0342_001077"
     CDS             complement(2093..2629)
                     /gene="ssb"
                     /locus_tag="U0342_001077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM2422431.1"
                     /translation="MMNRVVLVGRLTKDPELRYTPAGVAVATFTLAVNRTFTNQQGER
                     EADFINCVVWRKPAENVANFLKKGSMAGVDGRVQTRNYEGNDGKRVYVTEIVAESVQF
                     LEPRNSNGGGGNNYQSGNNNNNYNSGGNNFGQAPTNNGGFGQDQQQSQNQNYQSTNND
                     PFASDGKPIDISDDDLPF"
     gene            complement(2685..2978)
                     /locus_tag="U0342_001078"
     CDS             complement(2685..2978)
                     /locus_tag="U0342_001078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S6"
                     /protein_id="HEM2422432.1"
                     /translation="MARKYEIMYIIRPNIEEDEKKAVVERFDGILTENGAEIIESKEW
                     GKRRLAYEINDYRDGFYHIVKLNADKADSINEFDRLAKISDDIIRHMVIKEEA"
     gene            complement(3257..4489)
                     /gene="arcA"
                     /locus_tag="U0342_001079"
     CDS             complement(3257..4489)
                     /gene="arcA"
                     /locus_tag="U0342_001079"
                     /EC_number="3.5.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine deiminase"
                     /protein_id="HEM2422433.1"
                     /translation="MKMEQALNITSEIGKLQTVLVKRPGSELENITPEYLESLLFDDI
                     PYLKMMQKEHDFFAKTMKDSNIEVLYLEKLAAEALREANNKESFLTKMIKESNQMDES
                     ALYVRDYLMSFDEEEMIRKLMSGLKKSEIPERKKKHLNEMMDEQYPFFLDPLPNLYFT
                     RDPAAVIGNGVTINRMFQPARRRESMFIELILKHHPRFSNQEIPVWSGRGEPFSLEGG
                     DELVLNEETVLVGVSERTDARAVERLAESLFSRSPKIKRVLAVEIPETRSFMHLDTVF
                     TMVNFAQFTIHPAIQNQQGELNIYILEKSENGLEITPRRDFQRVIAEVLDEPEIDFIP
                     CGGEDVIVSAREQWNDGANTLAIAPGEVITYDRNQVSNDLLRSAGIKVHEVISSELSR
                     GRGGPRCMTMPLVRENLK"
     gene            complement(4568..5227)
                     /locus_tag="U0342_001080"
     CDS             complement(4568..5227)
                     /locus_tag="U0342_001080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEM2422434.1"
                     /translation="MDFITYIIDFILHIDQHLVEIINNFGIWTYIILFLIVFIETGLV
                     VFPFLPGDSLLFAAGALSVLDGSILHIVPLIITLWLAAVLGDTVNYHIGKKIGTSIPE
                     DSWFGKLINKEKMEKAEAFFNKHGGKTIFIARFMPFIRTFAPFVAGASRMNYRYFLNY
                     NILGATVWVLLCTLAGYFFGNFPIVKDNFSLVVIGIIVVSVIPMVVSFIKSKMDKKSA
                     E"
     gene            complement(5331..6110)
                     /locus_tag="U0342_001081"
     CDS             complement(5331..6110)
                     /locus_tag="U0342_001081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2422435.1"
                     /translation="MDFFEISSKTVASLTRNERILFDYVVKNMNLIKNQSIREVSAEC
                     FVSTTTFLRFVRKLGFTGYSEFTTVLKFTLLGHTELKPSPFVVEQSDYREEYLKNIIE
                     SVRVLEPSKIKKITKKLVSKPRIYFFAKGLSKHAAKYIKYLYTMSGFLVEFPEDYQYR
                     QAVLPHIGKDDLVFILTYGGHDIELIQTAQKLKSRNETPMLISITGADNNIIQNMSDI
                     NLYIFTDEIEMNNLDITSRISTIAIMELILYQFMEDETSSF"
     gene            complement(6127..7236)
                     /gene="aguA"
                     /locus_tag="U0342_001082"
     CDS             complement(6127..7236)
                     /gene="aguA"
                     /locus_tag="U0342_001082"
                     /EC_number="3.5.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase"
                     /protein_id="HEM2422436.1"
                     /translation="MGQLKGLPVEDGFRMPGEYEPHIGCFMIWPERPDNWRLGGKPAQ
                     QNYKEVAVAISNFEPVTMFVSPNQYKNARKELPDTIRVIEMSNDDAWIRDYGPSFLVN
                     DKGEMRGVDWGFNAWGGLLDGLYFPWDKDNQIAKKVCDIERLDYYSQKDFILEGCSIH
                     VDGEGTLVTTEECLLSEGRNPNLTKIEIEQTLKKYFHVQKVIWLKHGFYLDETNGHVD
                     NIFNFVAPGEVVLSWTDNKSDPQYEISRECYDILANQTDAKGRTFIIHKLHCPDPVLI
                     TQTESEGVEAINGTFPRQAGDRLAASYVNYYTANGAIIFPLFDDPKDKDAQELLEQLY
                     PDRKIVGIKAREILLGGGNIHCITQHLPDKSTIRE"
     gene            complement(7337..8278)
                     /gene="arcC"
                     /locus_tag="U0342_001083"
     CDS             complement(7337..8278)
                     /gene="arcC"
                     /locus_tag="U0342_001083"
                     /EC_number="2.7.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbamate kinase"
                     /protein_id="HEM2422437.1"
                     /translation="MNQKIVVALGGNAILSSDASAEAQQSALEKTAEYLVQFIENGDD
                     LIISHGNGPQVGNLMLQQHAGASEKNPAMPLDTCVAMTQGSIGYWMQNALDKAFLKHG
                     LDKVAVSLITQVVVDKDDPAFKKPTKPIGPFLTKEEAEKEMAETGAIFLEDAGRGYRK
                     VVPSPRPLSIKEHQIIKQLVDSGVVTISAGGGGVSVVENGLDLSGVETVIDKDFASEK
                     LAELISADLLVILTGVENVYINYNQPNQKKLERVTVSELEKYIDEKQFAAGSMLPKIE
                     AATAFVKERPNAKAIITSLENIGAMLEQGAGTVIIAG"
     gene            complement(8291..9385)
                     /gene="aguA"
                     /locus_tag="U0342_001084"
     CDS             complement(8291..9385)
                     /gene="aguA"
                     /locus_tag="U0342_001084"
                     /EC_number="3.5.3.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_020246372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="agmatine deiminase"
                     /protein_id="HEM2422438.1"
                     /translation="MRTIDSSSKKDGFRMPGEFEKHAGCYIIWPERPDNWRLGAKPAQ
                     KAFVDVATAISRFEPVTVVASSSQYVNARYMLPDEIRVVEMDNDDAWVRDSGPTFVVN
                     DSGDVRGVDWSFNSWGGLVDGLYFPWDKDDQVAQKICELERKDRYRLADFVLEGGSIH
                     VDGEGTLVTTEECLLSEGRNPQLSKQQIEMVLKEYLNLEKIIWLKRGIYLDETNGHVD
                     NIFNYVRPGVVALAWTDDETDPQYEISKECFDILSNETDAKGRKLEVHKINVPKPILI
                     TDEESKGVDAVEGTLPREEGDRLAASYINYYTANGGVVFPLFGDPNDELAREKLRQLY
                     PNCEVVGVKAREILLGGGNIHCITQQVPRG"
     gene            complement(9372..10757)
                     /locus_tag="U0342_001085"
     CDS             complement(9372..10757)
                     /locus_tag="U0342_001085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="APC family permease"
                     /protein_id="HEM2422439.1"
                     /translation="MEKKKKFRLFDAVLMAVCVVLVVESAAPAAAIGSSQFFWWIALL
                     ILFFLPYGLVSAELGTTYDDEGGIYDWVKRAFGRKWGARVAWLYWINYPIWMASLAVL
                     FVEVITQIFPVSFGTPVSIFIQLIFVWIVVIISCYPVSDSKWILNIAAFCKVAIMLCL
                     GVLGIYFAMTKGLANDFSGKALLPTFDLESLSFISVILFNFLGFEVVTTLASDMENPK
                     KQIPQAIIYGGVLIAFFYLLAAFGMGAAIPTSELSTSGGLIDSFIMLIGGVNPFVIII
                     GIMFMYTLVANLVSWALGVNYVAMYAAKNKDLPAVFGKTNPKNGMPTGTSILNGIVAS
                     VLIVAAPLIPNENIFWAFFALNVVALLGSYILMFPAFLKLRKVDPDRERPFKVPGGKI
                     LLYLMTFVPMILLIITLIFSAVPLNGSSAELNEKIPILIGTVVAVIVGEICIWLAGKR
                     KDKGEIGNEND"
     gene            complement(10830..11855)
                     /locus_tag="U0342_001086"
     CDS             complement(10830..11855)
                     /locus_tag="U0342_001086"
                     /EC_number="2.1.3.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putrescine carbamoyltransferase"
                     /protein_id="HEM2422440.1"
                     /translation="MNKKRDFIDTKDFSKEEILFMIEIGRKMKESIKNGHYPQLLKHK
                     TLGMIFEQSSTRTRVSFETAMTQLGGHAQYLAPGQIQLGGHESVGDTAKVLSRLVDIL
                     MARVERHQTVVELANTAAIPVINGMSDYNHPTQELGDAITMFEHLPKGKKIEDCKIVF
                     VGDATQVCASTMFMATKLGMDFVQFGPKGFQLREEHLKIAEENCKVSGGSYLITEDVD
                     IALKDADFIYTDVWYGLYEAELSEEERMKTFYPKYQVNKELISKAAPHVKFMHCLPAT
                     RGEEVTDEVLDAPYSVVIDEAENRLTAMRALLVYFMNPYVREAGFAVAEKYDAELELL
                     LRNGAGL"
     gene            complement(12090..13175)
                     /locus_tag="U0342_001087"
     CDS             complement(12090..13175)
                     /locus_tag="U0342_001087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2422441.1"
                     /translation="MKPTMMTYINEEEEMCRVILADFQTNAEKLESLVKNGAKEWLIL
                     ATGSSLNAAQSAKYYIENLADVRITIEEPFNHLYYEKLSSHLDLVIGISQSGQSTSTI
                     SALERVKKEASVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLML
                     TGLHFAYKTVQIDETRFNNEISAFSRAIDAIPATIAETEAFYERWQEEFATAPKFTAI
                     GYGPTVGTCKEFETKFSETVRVPSQGLDLEAFMHGPYLEVNPQHRIFFLETASAVTER
                     LVLLRDYESKYTPFTYTVKFGKGEDDRTLVIPTDLDEYQAPFLMILPFQILAHHIAEL
                     KGNKLTERIYTDFGVAMKSKTKPGDYA"
     gene            complement(13177..14535)
                     /locus_tag="U0342_001088"
     CDS             complement(13177..14535)
                     /locus_tag="U0342_001088"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2422442.1"
                     /translation="MSSERSLSSRFIEGLSIFAQKISSQKHIMAIRDGFAAMIPITII
                     AAFFLLVNNVLLQPENGLLKFIPNVENYLGVGIQVYNATLGIMAILAAFLIGNFLAKS
                     YGMEGRTEGVIAVAAYVVLIPASSHLMSVDGKAFEAGGVLTQEMTSSTGMFLAIIAAL
                     VSVTMLAKFSKSKKLKISMPESVPPAIAKSFNILIPSFLVLSILAIIEVLVVSFVSMS
                     IPEIIVKVLQIPLVGGFQTLPGILLYVFLAGFLWVFGIHGAFVLGAISGPVLLTSLQQ
                     NIDAVNAGTALPNIVTQPFLDAFVYMGGGGTIICLVIAIFIASKRPDHRMVTKFGLIP
                     SIFNVSEPLMFGLPVVFNPIYGIPLVIAPLASTAMAYFATSWGWISQTYILIPWVTPP
                     VLSGYLATGGDIRASILQIAIIIVGTLIYLPFVLVANRAYVLEQKAAGKVEAETVTNG
                     EV"
     gene            complement(14548..16950)
                     /locus_tag="U0342_001089"
     CDS             complement(14548..16950)
                     /locus_tag="U0342_001089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 9 protein"
                     /protein_id="HEM2422443.1"
                     /translation="MKPSMKRQIAQTGIIHRPLPIETKHALETLAKKKQVLSSRTLFS
                     SKQQVSLEFTHQGAGDFTISDQDEIKLSSPVVMPHWPAGAPDDGDYTNFGNVTISAPI
                     ENEDWSGFNRVRIQVFPDFPGVTNPYLMISFKNDGSVKVPDIYGREGVHGVNLINHEW
                     NDVIFEIEGLPRDRMTEMSFSYYLNGPERLTAGTMELFINEIKLEQISEPEISKGWIP
                     QDNTLVYSHNGYSKGMPKVAFCANKFVATSFTIHDKETDKVVFTGKSYQNATETGDFI
                     ILDFSDLQTVGEYYLKFADMQTEIFQIGTSEVIWESSIWKSLNFIFCERCGCPVFGKH
                     TTCHADIIAEHDGKQLSFNGGWHDAGDVSQQLIQTAEVTMALYEMASSLPEKEEMLRM
                     RLLEEGEWGLDFILKTRFGDGFRATSAGMTRWTDGLVGGMDDAIARVHNQAYENFYCA
                     GIEAYIGSQIADNATMQNHLLRIAEEDLLFAIKELEKHGTSQKPIFWEHTYQTSESLY
                     YATASWAASMVYQLTNKEIYAEKAAEWLYLMLEAQEKAGIRDSETSELYKGFFYRDKT
                     HKVIQHFNHQAREHLYLLALEAALETQPSNAEKQTWLQAVEMYGDYLKKVTRFTKPYP
                     LIPAGLYKKDEYLDEASFHLQHLLIDERAIEEYQLQFEQGIQINDEIALRKFPIWFSF
                     RGNNAILLSAGKAASIAGKILKDKSLLDIAEGQLQWVIGMNPFGQSMMHGEGYRYAQQ
                     YSVLNGEITGEIPVGMETFRNEDEPYWPEFNNATYKEVWVGNAGKWMSIVADLNKITG
                     KS"
     gene            complement(16947..17912)
                     /locus_tag="U0342_001090"
     CDS             complement(16947..17912)
                     /locus_tag="U0342_001090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2422444.1"
                     /translation="MDIQESVIGIDLGGTKILIGEVTKDGEVLNSKSYPSNTENQTKA
                     TEILLKVLDDYTQNIGFIAPKQTGIGVGLVGRVNHKSGVWLEIEPGKSNPTPLADILE
                     AKTGLPVSLGNDVVCATMAEKQFGWGQETNDFIYLNVGTGLAAGFVVDGRIIQGGHFN
                     AGEIGHAVVDIHSDVLCGCGRRGCVERLASGLGIKEEALRRLNNYPTSILAEAETELT
                     GKMVLHAAEQKDELAEEIIDNATFQLANLIMNLVRTTDPECVILGGGVTQNEHFFQKI
                     LGNLQSNTIRFVTKGVVRSKLEKDKVGLIGAAVIGMRLGNEGGKE"
     gene            18114..19169
                     /locus_tag="U0342_001091"
     CDS             18114..19169
                     /locus_tag="U0342_001091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2422445.1"
                     /translation="MKKITIQEIAKLSGVSVSTVSRVLNNSPSVSAAKRKKIQAIIDE
                     HNYTPSVFARGMVNKQTKNIGVILPDISNPYFISLITQIQKFALDYMFSTILFNTMLA
                     EPNNKNNQHPLTEEDYLKIILEKQVDGLLILGGEIDKEIVPKEYITALNQLNNEIPVV
                     VIGSKIPELNCLFIERNLKKGVTTLVSHLTALGHKNIGFIGGESGVKITTYRLESFKE
                     AMTSYQHPVNDDWVVLSDYYTADGYAAMTQLLENSATLPTALVAINDNVAIGAIRAIN
                     DAKLSCPEDIAIVSCDQFMNGDYQTPRLTSMDQHNEYLGKMAILQLISAINGQVEPMI
                     INHNPELIIRESCGSKL"
     gene            19186..19995
                     /locus_tag="U0342_001092"
     CDS             19186..19995
                     /locus_tag="U0342_001092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2422446.1"
                     /translation="MEKYLICSDLDGTLLLKNQTISPKTLNLLQQLIEEGHHFAVSTG
                     RMYNSATDFANLVHPKADVIASNGGVVAVSGEIILQEKMKQSALLETFLLCQNHDLPV
                     FFFSTDTVYYTKNPPYYFTDEEDKGRVNATKLVPIKTKESFLEHADQFINGIVIEEED
                     FDKLAALRSELEKLSDVSILSSHANNIEILPKDMDKKYAVKNLAAHLNIKPENVITFG
                     DGENDIGMLEVAGAGVAMENASELVKKSADFVTTANDADGIYYFLKKYLNR"
     gene            complement(20032..20370)
                     /locus_tag="U0342_001093"
     CDS             complement(20032..20370)
                     /locus_tag="U0342_001093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2422447.1"
                     /translation="MKVEGLLGFLGAALGIGFSLMVLVIPDISQALEEESFFFYMLTI
                     GSLVLSGVGLAGSFIVSHKPRLGGAMMVAAAIGCTMSISIMFLLPIVLLAVGGLIALI
                     NYEEAASVEE"
BASE COUNT         6113 a         4434 c         3307 g         6569 t
ORIGIN      
        1 atgaattttg atgttataca gttttaaatt tatttatttt cgtttttctc ttgcattttc
       61 acaaatggac tttttggttc gtatacaaac atgaaacaag ctttactcat agaagaatcc
      121 gcaactttca tggattgttc ttctagtttt ctagaaagga atttaccaac tgatttattc
      181 atatttttca tagttccgat acctcctttt caatagtttg taagtaagtg gattaatact
      241 tatcacctga aacaaagatc ctaccatgat taatgttttc atctctgcga atggtattag
      301 caacgcaatt cccgttaaaa ttagcgtccc tatcatcgct tttcttttta gtgttttccg
      361 gtgttcttca ccgattaaag gcaaactttc tgtgtctgcc ggagcgaata gaaacatgtt
      421 gagcagtata aatccaaatg tacctaaaac aatccaatta ttagagggga tattttgaaa
      481 aacaaatggc gcaagcacaa acatcatcaa gctaattaac gtgcaattca atgttttggt
      541 tgcatgtaat ccaaaagaat accgtctgag ccataaatat gacagatgta ctgtcactgt
      601 ttgcagtaat aaccctgtta ctaaggcaat accgtatacg agagcaaact tcatgacatt
      661 aattagaatt atttccagtc catattttac ttttaaataa ccttcttcat catctttcca
      721 gcggtctttc gaaatcagca catccgccat tctttctgac aaagggactt ttgcagtaaa
      781 attactcaac taattcacct ccactaatat tttacaacga atttacccat aataaccaaa
      841 aatgtaatga aatgtccgat tcttgtcatg aacgaccaaa aaagagcaaa attgccgatt
      901 ttttggatac atttcagaat attcaatcgt gtaaaaagga ctgtatgata ggtttaaaaa
      961 cccatattaa tattttattt aagtaagttt attcattaaa aaagccaact gtaaaagaat
     1021 gttcacagtt ggcttttcca ttttattaat cgtcttgttc cgtttgaaga atttctaaag
     1081 tttttgcatt tagtttgatt tcgtatttgt tattatcttg ttttactgtc acttcataat
     1141 aagttgtatc taattctctt tctattttcc aacttgttac gtcaccagct tgttcagaaa
     1201 cagccttatc catggcttct tttggtgatt taattccatc taagctaagt ttttcgtttt
     1261 ctttttcaac tccacctgca tcttctcggt caagtcgatc tgtttcatca cttagttgtt
     1321 cttttgtttc agcattgaat ttcatttcgt attcattatc atttgaaatc ccatcaactt
     1381 tatagacata ttttcccaag cttttctcta attcaacgct agatatttct gcatcactat
     1441 gtttgtcttt gaatgcgtta atcgcgtctt cataactcat atcgaagctt ttgttttgca
     1501 agctatctga tgaactttca ttattactgc ttttgctact agtagtttca ttgctgctat
     1561 tatttgatga tgtatcctta tcatcattaa aactacatgc tgataatgct cctactaata
     1621 ataccgtcat ccctactgtt gctaattttc tatacataat tgtttccccc tgtgcatttt
     1681 tttacttcta tataagaata acatgaataa atagcattaa cttccttctt aggtcctagg
     1741 ttcacatgat ccaaggtcta atttatgaaa aaacagtcta gaaatgaatt ctagactgtt
     1801 aaaattaatt tatttttctt cagcaacaaa tggtagtaat gccatttggc gtgagcgttt
     1861 gatagcaaca gtaagtttac gttgatattt agcgcttgtt ccagttacac gacgaggtaa
     1921 aattttacca cgttcggaaa cgaatttttt aagaagttct acatctttat agtcgatatg
     1981 cgtaatacca ttggaagtaa agtaacatac ttttttccga cggcgtccgc ctctgcgtcc
     2041 tccagccatt gaaagttcct cctatcttaa agttcaaacc gctaaaatga atttagaatg
     2101 gcaaatcgtc atcagaaatg tcgattggct taccatcact tgcaaaagga tcattattag
     2161 tggattgata attttgattt tgagattgtt gctggtcctg tccgaatcca ccgttatttg
     2221 taggtgcttg tccgaagtta tttccaccgc tattataatt attgttgtta ttgccacttt
     2281 gatagttatt tccgccaccg ccattagaat tacgcggttc aaggaattga acactctctg
     2341 ctacaatttc agtcacataa acacgtttac cgtcgttccc ctcgtaatta cgagtttgaa
     2401 cacggccatc aacgcccgcc atgcttcctt tcttcaggaa attagcaacg ttttctgccg
     2461 gtttacgcca aacaacacaa ttaataaagt cagcttctcg ttctccttgt tggttagtga
     2521 aagtgcgatt tacagctaat gtaaaagtcg caacagccac accagctgga gtgtaacgta
     2581 attcaggatc ttttgttaag cgtcctacaa gtactacacg attcatcatg caaaaccaac
     2641 ctcctctcgt ttagtaaatc aaggtcctag ccttgaatga attcttatgc ttcttcttta
     2701 attaccatat gacgaatgat atcatcagaa attttagcta aacggtcaaa ttcgttgata
     2761 gaatctgctt tatcagcgtt taatttcacg atgtggtaaa aaccatcacg atagtcattg
     2821 atttcgtatg ctaagcgacg tttaccccat tcttttgatt cgatgatctc cgcaccattt
     2881 tcagttaaga ttccgtcaaa gcgttctaca acagcttttt tctcatcttc ttcaatgttt
     2941 gggcgaatga tgtacataat ttcgtacttt ctagccatct actctacacc tccttgtggt
     3001 cttaagcggc tctgatatag catgaaacca taccatatcc ctgaaattca gactgccttt
     3061 agcaagcctt aaaatcaaga gcgagcaagg aataatttat aattactcac aataaaatat
     3121 tatatcatag cgctaactaa ccagcaagat atttctcgaa aattctggtt tgaaaacact
     3181 atagcacatc tcaaaatagc cggcaatact ttttacgaaa gtcttgtttt gcaggggaat
     3241 tctcgttttt aaagacttat tttagatttt ctctaacaag cggcatcgtc atacatcttg
     3301 gccccccgcg gcctctagaa agctccgaac taatcacttc atgaacctta atacccgcac
     3361 ttcttaacag atcgtttgat acttgatttc gatcatatgt aattacttct ccaggagcaa
     3421 ttgctaacgt gtttgcccca tcattccact gctctcgcgc cgaaacaatt acatcttctc
     3481 cgccacaagg aataaaatca atttctggct catccaaaac ctccgcaatc acgcgctgaa
     3541 aatctcttcg cggagtaatt tctaatccat tctcactttt ttctaaaatg tatatattaa
     3601 gttctccttg ttgattttga attgctggat gaatcgtgaa ctgtgcaaaa ttaaccatgg
     3661 tgaaaaccgt gtccaaatgc ataaatgacc ttgtttcagg aatttcaaca gctaaaactc
     3721 gtttaatttt tggagaacga ctaaataaac tttctgcaag ccgttcgact gctcgtgcat
     3781 ccgttcgctc agatacaccg acaagaacag tctcttcatt tagaactaac tcatctccac
     3841 cttctaaaga aaacggctct ccgcgccctg accataccgg aatttcttga ttactaaaac
     3901 gaggatgatg tttcaaaatc agctcgataa acatcgactc tcgccttcta gctggctgga
     3961 acattctatt aatcgtcaca ccgttaccaa taacagctgc tggatctcga gtgaaataca
     4021 aatttggtaa tggatctagg aaaaatggat attgttcgtc catcatttca tttaagtgtt
     4081 tctttttgcg ttcggggatt tctgattttt ttaaaccgga cataagtttt ctaatcattt
     4141 cttcctcgtc aaaagacatc aaataatctc gtacatatag cgcactttcg tccatttgat
     4201 tggattcttt aatcattttc gttaaaaaag actctttatt gttagcttct cgtaatgctt
     4261 cagcagctag tttttctaag tagagtactt cgatgtttga atctttcatt gttttagcaa
     4321 aaaaatcatg ttccttctgc atcattttta aatacggtat atcatcaaat aataaagatt
     4381 ctaggtattc tggtgtgata ttttcgagtt cagaacccgg cctctttaca agaactgttt
     4441 ggagtttgcc aatttcagat gtaatattca atgcttgttc cattttcatc acctcttcct
     4501 aactaattac cccaaaagtt tgtcatgtat gcgagagatt tcccgggaaa taaaaaaagc
     4561 acagagatta ttctgcgctt tttttgtcca ttttactttt aatgaacgaa actaccattg
     4621 ggataacgga aactacgata attccgatta ctactaacga gaagttgtct ttaacgattg
     4681 ggaagttccc gaagaagtaa cccgcgagcg tacaaagtaa tacccaaaca gttgccccta
     4741 aaatattata atttaagaaa taacgataat tcatacggct tgctccagct acaaatggcg
     4801 cgaacgtgcg aataaaaggc atgaacctag caataaaaat tgtttttcca ccatgtttat
     4861 tgaagaacgc ctccgctttt tccatttttt ctttatttat tagtttccca aaccagctat
     4921 cttctggtat ggatgttcca atctttttac cgatatgata gttcactgta tcgcctagaa
     4981 ctgctgctaa ccataaagta ataattagcg gaacaatatg taaaatcgaa ccatctaata
     5041 cagataatgc accggctgcg aatagtaatg aatctcctgg taaaaatgga aatactacca
     5101 atccagtctc tataaaaaca atcaggaaca aaataatgta agtccaaatt ccaaaattat
     5161 ttataatctc cactaaatgt tggtcaatgt gcaaaataaa atcaatgata taggtaataa
     5221 aatccaccag gcactcactt ccttttcttt ttttaaaagt caaagttcat tttaccacaa
     5281 gtcaagtctc cttgtatcag acttgtgact tatttatcaa ttcttaacaa ttaaaaacta
     5341 ctagtttcat cttccataaa ctggtataag attagctcca taattgcaat tgtagagatg
     5401 cgagaagtaa tatctaaatt attcatttca atttcatctg taaaaatata taaattaata
     5461 tcactcatat tttgaataat attattatca gccccagtaa tcgaaatcaa catgggcgtt
     5521 tcatttctgc tttttagttt ttgggcagtt tggattaatt caatgtcatg tccaccgtac
     5581 gtaaggataa aaactaaatc atctttacca atatgcggca atacagcttg gcgatactga
     5641 taatcttcag gaaactctac caaaaatccg ctcattgtat agagatattt gatgtatttc
     5701 gcagcatgtt tactcagccc tttagcaaaa aaataaattc gcggtttgct tactagtttt
     5761 ttggtgattt tcttgatttt acttggttct aaaactcgga cagattcaat aatgtttttc
     5821 aaatattctt cacgataatc cgactgttct acgacaaatg gggacggttt tagctctgta
     5881 tgcccaagta aagtgaactt taagactgtt gtaaactcgc tataaccagt aaatccaagc
     5941 tttcttacaa aacgcaaaaa agttgttgtt gaaacaaagc attctgcaga aacttctcga
     6001 atactttgat ttttaattaa attcatattc ttaacgacat agtcaaataa aatccgctca
     6061 ttccgagtta gggaagctac agtcttactg gaaatttcga aaaagtccat acttcaagtc
     6121 tcctttttat tcacgtatcg tacttttatc agggagatgt tgcgtgatac agtgaatatt
     6181 tccgccgcct agcaaaatct cacgtgcttt aatccccaca atttttctat caggatataa
     6241 ctgttcaagt aattcctgcg catctttatc ttttggatca tcaaacaatg ggaaaataat
     6301 agcaccattc gctgtatagt aatttacata actagcagct aatcgatctc cagcctgtct
     6361 agggaaagtt ccattaatcg cctccacacc ttcgctctct gtttgcgtaa taagtactgg
     6421 atccggacaa tgtagtttat gtattataaa agttcttccc ttagcatctg tttggttagc
     6481 taaaatatca tagcattctc ttgaaatttc atactgcgga tcacttttgt tatccgtcca
     6541 cgataaaaca acttcgccag gtgccacaaa gttaaaaatg ttatctacat gtccgtttgt
     6601 ttcgtcaaga tagaagccat gcttaagcca aattaccttt tgtacatgga aatatttttt
     6661 taaagtttgt tcgatttcta ttttggttaa attcggattc cttccttctg ataacagaca
     6721 ctcttctgtc gtaaccagcg tcccttcacc gtctacatga atggaacaac cttctaaaat
     6781 aaaatctttc tgtgagtagt aatcaagtcg ctctatatca caaacttttt ttgcaatttg
     6841 attatcttta tcccacggaa aatatagacc atcaagaaga ccaccccaag cattaaatcc
     6901 ccagtcaaca ccacgcattt ctcccttatc attcaccaaa aaacttggtc cataatcgcg
     6961 tatccacgca tcatcattac tcatttcgat aacacgaatg gtatccggaa gttctttacg
     7021 agcattttta tattgatttg gtgatacaaa catagtgact ggctcaaaat ttgaaatagc
     7081 gactgcaact tctttatagt tttgttgcgc tggctttcca ccaagccgcc agttatcagg
     7141 tctttctggc caaatcatga aacagccaat atgaggttcg tattctcctg gcattctgaa
     7201 tccgtcctct accggcaacc ctttcagttg tcccatcctc attctcctcc tattacttca
     7261 taaccacatt atacatgaaa tactgtttta caagacaaaa accgagtaac aagtacccgg
     7321 atttcgccct attctactag cccgcaataa tcactgtccc tgccccctgt tctagcatgg
     7381 cgccaatatt ttcaagcgag gtgattattg ctttggcatt tggtctttct ttgacaaaag
     7441 ctgttgctgc ttcgattttg ggcaacatac ttcctgctgc aaattgtttc tcatcaatat
     7501 atttttctaa ttctgaaacg gtaactcttt caagtttctt ttgatttggc tgattataat
     7561 tgatataaac attttccacc cctgttaaaa taaccaacaa atccgcacta attagttctg
     7621 caagtttttc agaagcaaaa tctttatcga ttacggtctc taccccagat aaatcaaggc
     7681 cattttcaac gaccgaaact ccgcctccac cagcagaaat agtcacaaca ccactatcaa
     7741 ccaattgttt aataatttga tgttctttaa tactaagcgg gcgaggagat ggtacaactt
     7801 tacggtaacc tcgaccagcg tcctcaagaa atattgcacc agtttctgcc atttcctttt
     7861 cagcctcttc tttagtaaga aaaggcccaa ttggtttggt tggtttttta aaagcaggat
     7921 catctttatc cacaacaact tgtgtaatta atgaaaccgc tactttatct agcccgtgtt
     7981 ttaaaaatgc tttatctagc gcattttgca tccagtagcc aatactccct tgcgtcattg
     8041 cgacacacgt atcaagcggc attgctggat tcttttcaga agctcccgca tgttgttgca
     8101 gcatcaggtt gcctacttgc ggtccatttc catgcgaaat aattaaatca tccccgtttt
     8161 cgataaattg caccaaatat tcggctgttt tttcaagtgc actttgttgc gcttcagcac
     8221 tggcatcact cgataaaatt gcatttccac ctagtgccac gactattttt tgattcatgc
     8281 tgttcactcc ttatcctctt ggcacctgtt gagtaataca gtgaatattt ccgccaccaa
     8341 gtaaaatttc tcttgctttc acaccaacca cttcacagtt tggataaagt tgacgtaatt
     8401 tttcgcgggc aagttcatca tttggatccc caaatagcgg gaaaaccact ccaccattcg
     8461 ctgtgtagta attaatatag cttgctgcca gtcggtcgcc ttcttcccgt ggtagcgttc
     8521 cttccacagc atctacacct ttactttctt catcggtaat taaaattggt tttggtacat
     8581 ttattttatg cacttctaat ttgcgccctt ttgcatcggt ttcattcgat aaaatatcaa
     8641 agcattcttt agaaatttca tactgcggat cagtttcatc atctgtccac gcgagcgcta
     8701 ctacacctgg gcgtacataa ttgaaaatat tatctacatg accattcgtt tcatctaaat
     8761 aaattcctcg ttttaaccaa ataatttttt ctaaatttaa atactctttt aaaaccattt
     8821 cgatttgctg ttttgaaagt tgtggattgc gaccttctga taataagcat tcttctgtcg
     8881 ttacaagcgt gccttcaccg tcgacatgaa tggaacctcc ttctaacaca aaatcagcta
     8941 agcgataacg atcttttcgc tctaattcgc atattttttg agcgacttga tcatctttat
     9001 cccacgggaa gtacaaacca tcgaccaatc caccccaaga gttaaatgac caatccacac
     9061 cacgtacgtc accagaatca ttgaccacaa aagttggtcc agaatcgcgc acccaagcat
     9121 cgtcgttatc catttccact acgcgaattt catcaggcaa catatatctc gcatttacat
     9181 attgacttga acttgcaaca actgtaactg gttcaaaacg ggaaatcgct gtcgccacat
     9241 caacaaaagc tttttgcgca ggtttggctc ctaagcgcca attatctggt cgttctggcc
     9301 aaataatata gcaaccagcg tgtttttcaa attccccagg cattctaaat ccatcttttt
     9361 tagaagaact atcaatcgtt ctcatttcct atctctcctt tgtcttttct tttcccagca
     9421 agccaaatac atatttcacc aacaatcacc gctacaacgg ttccaattaa gattgggatt
     9481 ttttcattta attctgcact tgaaccattt aatggtactg cagagaaaat caaagtaata
     9541 atgagtaaaa tcattggtac gaaagtcatt aagtaaagca agattttgcc acctggcact
     9601 ttaaatggac gttctcggtc cggatccacc ttacgtaatt tcaaaaatgc tggaaacatt
     9661 aggatatatg aacctagtaa agcaactaca tttaatgcaa agaatgccca gaaaatattt
     9721 tcatttggaa taagtggtgc cgcaacgatt aatacagaag ctacaatccc atttaaaata
     9781 ctagtacccg ttggcatacc atttttcgga tttgtttttc caaaaacagc tggtaaatct
     9841 ttgtttttcg ctgcatacat tgctacataa ttcacgccta gtgcccaaga gactaaattt
     9901 gctactaatg tatacataaa cataatccca ataataataa caaatgggtt aactccgcca
     9961 atcagcataa taaagctatc aataagacca ccggatgttg aaagttcaga agtcggaatt
    10021 gctgccccca ttccgaaagc tgctagtaaa tagaagaatg caatcaaaac cccaccataa
    10081 atgattgctt gaggaatttg ttttttagga ttttccatgt cactcgcaag cgttgttacc
    10141 acttcaaaac ctaagaaatt aaataaaatg actgaaataa atgacaaact ctctaaatca
    10201 aaagttggaa gtaatgcttt tccagagaaa tcattcgcca atcccttcgt catcgcaaaa
    10261 taaattccaa gtacaccaag gcaaagcata attgccactt tacagaaagc tgcgatatta
    10321 agaatccatt tgctatcact cactggataa caactaataa taacaacaat ccacacaaaa
    10381 atgagctgaa taaaaatcga aaccggcgtc ccaaatgaaa ccgggaaaat ttgcgtaata
    10441 acttctacaa acaataccgc taaactcgcc atccaaatcg gataattaat ccagtataac
    10501 caagcgacac gcgcacccca ttttcggcca aatgcccgtt ttacccaatc atagattccg
    10561 ccttcatcat cataggttgt cccaagttct gccgaaacaa gtccatatgg taagaaaaat
    10621 aaaataagta acgcaatcca ccagaaaaat tgagatgatc ctatcgccgc tgctggcgcg
    10681 gcagattcca caactaaaac gacacataca gccataagaa ccgcatcaaa taatctgaat
    10741 ttcttctttt tttccaaaat gcccactcct ctttttaagt ggggggaaga aaacggccag
    10801 cgctctcttc tcctccttat tttggtatct tataagccag cgccatttct aagtaataac
    10861 tctagttctg catcatattt ttccgcaact gcaaaacccg cttctctcac atacggattc
    10921 ataaagtata caagcagtgc tctcatcgct gttaaacgat tttcagcttc gtcaataaca
    10981 actgagtatg gagcatcaag cacttcgtcc gtaacctctt ccccacgagt tgcgggtaaa
    11041 cagtgcataa acttcacatg tggagccgct ttactgatca attctttatt cacttgatat
    11101 ttaggataaa aagttttcat tcgctcttct tcggaaagtt ccgcttcgta taggccatac
    11161 caaacatctg tataaatgaa atctgcgtct tttaacgcaa tgtccacatc ttctgtaatt
    11221 aaatagctcc cgccagatac tttgcaattt tcttcagcga ttttcaaatg ttcttcacgt
    11281 aattgaaatc cttttggtcc aaattgaacg aaatccattc caagttttgt tgccataaac
    11341 attgtagatg cacatacttg agtagcatct cctacaaaga caattttgca gtcttcaatc
    11401 ttttttcctt ttggaaggtg ttcgaacata gtaattgcat cacctaattc ttgtgtagga
    11461 tggttgtaat cactcatccc attaataacc ggaatagcag ctgtgtttgc aagttctact
    11521 accgtttgat gacgttcaac acgcgccatc aaaatatcta caagcctaga aagaactttg
    11581 gctgtatcgc ctactgattc atgtccgccg agctgaattt gtccaggagc taaatattgc
    11641 gcatgaccac caagctgtgt cattgctgtt tcaaaagata cacgagttct tgttgatgat
    11701 tgttcaaaaa tcatcccaag cgtcttatgt tttaaaagtt gtgggtaatg accgttttta
    11761 atagattctt tcattttgcg accgatttct atcataaata gtatttcttc tttagaaaaa
    11821 tctttagtgt cgataaaatc tctttttttg ttcatttcta tcacctcaac catttatttt
    11881 ctaaaccttt tctggggcat actcgagtat ttccttgcca catgctcatc atagtacaaa
    11941 agagattgtt tttgaatacg ttttcttttt ttaagaacag acggaatcac cctgtaactc
    12001 gttacattct gcgtaacatg tgacccaaat acaaaaagaa gactggaaaa accctcctta
    12061 taaggatttt tccagtctat tagcctctct tatgcatagt cacctggttt tgttttactc
    12121 ttcatcgcta cgccaaagtc tgtgtagata cgttctgtta atttattgcc tttcaactcc
    12181 gcaatatgat gcgctaaaat ttggaaagga agaatcatta ggaaaggcgc ttggtattca
    12241 tctaaatctg ttggtataac tagcgttcgg tcatcttcac ctttaccaaa tttaactgta
    12301 tacgtaaacg gggtgtattt agattcataa tcccgtaaca atactaatcg ctcggtaact
    12361 gcactcgccg tctccaagaa gaagattcta tgttgtggat ttacttctaa atacggccca
    12421 tgcataaacg cttctaaatc aagaccttgt gatggcacgc ggacagtttc tgagaatttt
    12481 gtttcaaatt ctttgcatgt tccaacagta ggaccatatc caattgctgt gaatttcggt
    12541 gcagtagcga attcctcttg ccatctttca taaaatgctt ctgtttcggc aattgttgct
    12601 ggaattgcat cgattgctcg gctaaatgca ctgatttcat tattgaacct agtttcatca
    12661 atttgtactg ttttgtatgc aaaatgaagt cctgtcagca ttaatgttag aactgttgct
    12721 gtaaaacctt ttgttacgta gccaactcgt tcttttccgg agccaatatc aagcgtaata
    12781 tccgcaaatt cagcaatttc actcgttaca tcactagtta gagcgactac tggaacggaa
    12841 gcttcttttt tcactcgttc tagcgcagaa atggtcgacg tgctttgacc gctttgcgaa
    12901 atcccgataa ccaaatctag atggcttgat aatttttcat aatataaatg gttgaagggt
    12961 tcttcaatcg taatgcggac atcggctaga ttttcaatgt aatatttggc gctttgagct
    13021 gcatttaagc ttgatccagt tgctaaaatt aaccattctt ttgcgccatt ttttacgagt
    13081 gattctagtt tttctgcatt tgtttggaaa tctgctaaaa ttactcgaca catttcctct
    13141 tcttcattaa tatacgtcat cattgttggt ttcattttaa acttctccat tcgttactgt
    13201 ttctgcttct actttcccag cagctttttg ttctaaaaca tacgcgcggt ttgctacgag
    13261 tacaaatggt aggtaaatca gcgttccaac gataataatt gcgatttgaa ggatggacgc
    13321 gcgaatgtct ccgcctgtcg caaggtaacc cgaaagcact ggtggcgtca cccacggaat
    13381 caaaatataa gtttggctaa tccagcccca tgaagttgcg aagtatgcca ttgcagtcga
    13441 agctagaggt gcaataacta atggaatacc ataaatcggg ttgaatacaa ctggcagtcc
    13501 gaacattagt ggttcgctga cgttgaaaat actcggaatt aagccgaatt ttgtgaccat
    13561 gcgatgatcc ggtcgtttag aagcaatgaa aatcgcgata actaaacaga tgatggttcc
    13621 gccgccaccc atgtatacaa aagcatctaa aaacggttgt gtaacgatgt tcggtaaagc
    13681 tgtccctgca ttcactgcat caatattttg ttgtaaagaa gttaaaagaa ctggtccaga
    13741 aatcgcgcct aatacgaatg cgccgtgaat accaaagacc cataagaatc ccgctaaaaa
    13801 tacataaagt agaatacctg gtaacgtttg gaacccgcca actaatggaa tttgtagtac
    13861 ttttacgata atttctggaa tactcattga tacaaaacta actacaagca cttcaataat
    13921 tgctaaaata cttagaacta agaatgatgg aattaaaatg ttaaatgatt ttgcaattgc
    13981 cggtggaaca ctttcaggca tagagatttt taatttttta cttttcgaga atttcgcaag
    14041 catggtaaca ctgactaaag cagcgatgat tgcaaggaac attcctgtcg aacttgtcat
    14101 ttcttgggtt aaaacgccgc cagcctcaaa agctttaccg tcaaccgaca ttaaatgtga
    14161 agatgccggt attaaaacaa cataagcagc tacagcgata accccttccg tacgcccttc
    14221 cattccgtat gatttagcta aaaagttacc aattaagaat gctgctaaaa tcgccataat
    14281 accgagtgtc gcgttataga cttgaatacc tacacccaaa taattttcta catttggaat
    14341 gaatttaagc agaccatttt ctggttgaag taacacgtta tttacaagca agaaaaatgc
    14401 ggcaataatc gtaatcggaa tcatcgctgc aaagccatca cgaattgcca tgatatgctt
    14461 ttgcgatgaa attttttggg caaaaattga taatccttca ataaatcggc tagataaact
    14521 tctctctgaa ctcatttttt tgtcctccta tgactttcct gttattttgt ttaaatctgc
    14581 tacaattgac atccatttgc cggcattacc gacccaaact tccttataag ttgcattatt
    14641 aaactccggc cagtatggtt catcttcatt tctaaaagtt tccattccga ctggtatttc
    14701 tcctgtgatt tcgccattta gtacactgta ttgctgtgcg tagcgataac cttcgccatg
    14761 catcattgat tgtccaaacg ggttcattcc aattacccac tgtaactgac cttccgcaat
    14821 atctaaaagc gacttatctt tcaaaatttt tccagcaatc gatgcggctt ttcctgccga
    14881 aagtaaaata gcgttatttc ctctaaacga gaaccaaatt gggaattttc gcaacgctat
    14941 ctcgtcgttt atttggatac cttgctcgaa ttgtaattgg tattcttcta tcgcccgttc
    15001 atctatgagt aaatgttgta agtggaaact tgcttcgtct aaatactcat cttttttata
    15061 aagtcctgct ggaataagcg gatatggttt agtgaaacgt gttacttttt tcaaatagtc
    15121 gccgtacatt tcgaccgctt gtagccaagt ttgtttttca gcgttactcg gttgcgtttc
    15181 aagcgccgcc tcaagtgcca gtaaataaag atgttcgcgt gcttgatgat taaaatgctg
    15241 aatgaccttg tgcgttttat cgcggtagaa aaatcctttg taaagttcgc tagtttcgct
    15301 gtctctaatt ccagcttttt cttgcgcttc tagcatcaaa tataaccatt cggccgcttt
    15361 ttctgcatat atttctttgt ttgttagttg ataaaccatc gaagctgccc aagaagcagt
    15421 cgcataatat agactttctg aggtttgata cgtatgctcc cagaaaatcg gcttttggct
    15481 cgttccgtgt ttttccagtt cctttatcgc aaaaagcaaa tcctcttccg cgattctcag
    15541 caaatgattc tgcatagtag cattatccgc aatttggctg ccaatatacg cttcaatccc
    15601 agcacaataa aagttctcat aagcttggtt atgaacgcgc gcaattgcat catccatccc
    15661 accaacaagc ccatccgtcc atctcgtcat acctgcgcta gtcgctctaa aaccgtctcc
    15721 gaagcgcgtt ttcaaaataa aatctagtcc ccactcgcct tcttctaaaa ggcgcatccg
    15781 caacatttcc tctttttcag gtaaactcga agccatttca tataaagcca tcgttacttc
    15841 cgccgtttga ataagctgct gcgaaacatc gcccgcatcg tgccatccac cattaaatga
    15901 caactgtttc ccatcgtgtt cagcgataat atctgcgtga caagtcgtat gtttcccaaa
    15961 aaccgggcaa ccgcatcgtt cgcagaaaat aaagttaagc gatttccaga tagaagattc
    16021 ccagatcact tcggaagtcc caatttgaaa aatttccgtt tgcatatccg caaattttaa
    16081 atagtattca cccacagttt gtaaatcaga aaaatcaaga ataatgaaat cgccagtttc
    16141 tgttgcgttt tggtaacttt ttccagtaaa aacaactttg tctgtttctt tgtcgtgaat
    16201 tgtaaaggaa gtcgctacaa acttgttggc gcaaaacgct actttgggca tgcccttaga
    16261 gtaaccgtta tgcgaataaa ctagcgtatt atcttgcgga atccaaccct tggagatttc
    16321 cggctcactg atttgttcta atttaatttc attaatgaat aattccattg ttccagcagt
    16381 caatcgctct gggccattca agtaataact aaaactcatt tcggtcattc ggtcacgcgg
    16441 caaaccttca atttcaaaaa tgacatcatt ccattcatgg ttgattaaat tcacaccgtg
    16501 aacaccttct cgcccatata tatcaggcac tttcacgctc ccgtcgtttt taaaactaat
    16561 cattaaatag ggatttgtta ctccaggaaa atcagggaaa acttggattc gcacacgatt
    16621 aaagccgctc cagtcctcat tttcaatcgg ggccgatatg gtaacgttac caaaattagt
    16681 ataatcaccg tcatccggag caccagcggg ccaatgcggc ataaccacag gcgaagaaag
    16741 cttgatttca tcttggtcag aaatagtaaa atctcctgct ccttgatgtg taaactctaa
    16801 agaaacctgt tgtttagagc taaataaagt cctacttgat aaaacttgtt tctttttcgc
    16861 taaagtttct aacgcatgct tggtttcaat agggagtggt cgatgaataa taccagtttg
    16921 cgcaatttgt cgtttcatac ttggcttcat tcttttcctc cttcatttcc tagtctcatt
    16981 ccaataacgg ctgcaccaat taagccaacc ttatccttct caagcttaga gcgaacaaca
    17041 ccttttgtaa caaaacgaat tgtattgctt tgaagattac ctagtatctt ttggaaaaaa
    17101 tgctcatttt gtgtcacgcc tccgccaaga attacgcatt cagggtcggt tgtacggact
    17161 aaattcataa tcaaattagc tagctgaaac gttgcattat caataatttc ctctgcaagc
    17221 tcatcttttt gctccgctgc atgaagaacc atttttccag ttagttctgt ttcggcttca
    17281 gcaagtatgg atgtcgggta gttatttaaa cgtctcagtg cctcttcttt aatcccaaga
    17341 ccggaagcaa gtcgttccac acaaccacgt ctaccgcaac cacagagtac atcactatga
    17401 atatctacta cagcatgacc gatttcaccc gcgttaaagt gcccgccttg tataattcgt
    17461 ccatccacca caaacccagc agcaagacca gtaccaacat ttaaataaat aaaatcgttt
    17521 gtttcttgtc cccaaccaaa ttgcttttcg gccattgtgg cacaaacaac atcattgccc
    17581 agacttacag gtaatcctgt ttttgcttct aaaatgtctg cgagcggggt tggattgctt
    17641 tttccaggtt caatctctaa ccaaacacct gacttgtgat tcacacgacc aactaatcct
    17701 acaccaatac ccgtttgttt tggtgctata aaaccaatat tttgcgtgta atcatctaaa
    17761 acctttaaca atatttcggt agctttggtc tgattctccg tattacttgg gtaactcttg
    17821 gaatttagca cctcaccatc ttttgttact tcgccaatta aaattttagt gccacctaga
    17881 tcaattccga tgacagattc ttgtatgtcc aactattcca cctcattttt ggtaacgtta
    17941 ccaaattaaa acgtttgttg atagcgcttt ctaccataga ataaccggat atttttaata
    18001 tgtcaaccct ttttattata tttttgataa cgttaccaaa tttcacttgt tatttccccc
    18061 taagtacgct acacttaaaa tagttaaaaa tgcttacgag gtgaacattt cgaatgaaaa
    18121 aaataaccat acaagaaata gctaaactta gcggtgtctc cgtttcaact gtttcgcggg
    18181 ttcttaataa cagtccttct gtgtcagctg cgaaacgcaa aaaaatccaa gcaatcattg
    18241 atgaacataa ttacacacct agcgtgtttg ctcgtgggat ggtcaataag cagacgaaga
    18301 atataggcgt tattttacca gatatttcca atccctattt catttcactt ataacgcaaa
    18361 ttcaaaaatt cgcgctagat tatatgtttt cgacgatttt gttcaataca atgcttgcgg
    18421 agccaaataa taagaataat caacatcccc taacggaaga agattaccta aaaatcattt
    18481 tagaaaagca agtggatggt ttacttattt taggtggaga aatcgataaa gaaatcgttc
    18541 caaaagagta tataactgct ctaaatcagt taaataatga aattccagtt gttgttatcg
    18601 ggtcgaaaat tcctgagctc aactgtttat ttattgaacg taatttaaaa aaaggggtaa
    18661 caaccttagt tagtcatcta actgcacttg gacacaaaaa tattggtttt attggcggag
    18721 aatctggtgt aaaaatcacc acctaccgtc tagaatcttt taaagaagca atgactagct
    18781 atcaacatcc ggtaaatgac gactgggtgg ttctgtctga ttattatacg gctgatggct
    18841 acgcagcaat gactcaactt ttagaaaata gcgctacttt gccgacagca cttgtagcta
    18901 tcaatgacaa tgtggctatc ggggcaattc gagcgattaa tgatgccaaa ctttcttgcc
    18961 ctgaagacat cgctattgtc agctgcgatc aatttatgaa tggcgattac caaactccgc
    19021 gtttaacttc catggatcaa cacaatgaat atcttggtaa aatggctatt ttacaactaa
    19081 ttagcgcaat taacggtcaa gtcgagccaa tgattatcaa ccataatcca gaactaatta
    19141 tccgcgaatc ttgcggctct aagctataac gaaaggaagg tccacttgga aaaatactta
    19201 atttgttctg atttagacgg gacattacta cttaaaaacc aaactatctc accaaaaaca
    19261 ctaaatttat tgcaacaact aatagaagaa ggtcatcatt ttgccgtttc taccggtcga
    19321 atgtataatt ccgcaacaga cttcgccaac ctcgttcatc caaaagcaga tgtcattgct
    19381 tcaaacggcg gtgtagttgc agtatcaggc gaaattatcc tacaagaaaa aatgaaacaa
    19441 tctgcgttac tcgagacatt tttattgtgc caaaatcatg atttacctgt gtttttcttt
    19501 tcaacagata ctgtttacta cactaaaaat cccccatatt attttacgga tgaagaagat
    19561 aaaggccgcg taaatgctac aaaactcgtt cctatcaaaa caaaagaaag cttccttgag
    19621 catgcggacc agttcattaa tgggattgta atcgaggaag aagatttcga caaactcgca
    19681 gcccttcgaa gtgagctaga aaaactatcc gatgtttcta tcctttcttc ccatgccaat
    19741 aatatcgaga tcttaccaaa agatatggat aaaaaatacg ccgtgaaaaa tctcgctgca
    19801 catttaaata tcaagccaga aaatgtaatt acttttggtg atggtgaaaa tgatattggg
    19861 atgcttgaag ttgctggcgc aggggttgcg atggaaaatg caagtgaact agtgaaaaaa
    19921 agtgctgatt ttgttactac tgcaaatgat gccgatggaa tttactactt tttgaaaaaa
    19981 tatcttaatc gttaataaaa aaagctgccc acgcggacag ctttttttca tttattcttc
    20041 tacggaagca gcttcttcat agttaattaa tgcaattaat ccgccaacag caagtagtac
    20101 gattggcagt aagaacataa tcgaaattga cattgtacag ccaattgcag ctgccaccat
    20161 cattgcccca ccaagacgcg gcttatgcga aacaataaac gatcccgcaa gtcccactcc
    20221 agaaagcaca agtgaaccaa tcgttaacat atagaagaaa aatgactcct cttctaatgc
    20281 ctgtgaaata tcaggaataa ctagaaccat caaactaaat ccaataccca gtgccgcccc
    20341 taaaaagcca agtaatcctt caactttcat gataaaaact ccttttttat acgcattttc
    20401 ttttatgtta tcattttaac aaa
//
LOCUS       DASEAA010000036        20265 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.036, whole genome shotgun sequence.
ACCESSION   DASEAA010000036 DASEAA010000000
VERSION     DASEAA010000036.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 20265)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 20265)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..20265
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.036"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(117..887)
                     /locus_tag="U0342_001094"
     CDS             complement(117..887)
                     /locus_tag="U0342_001094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2422448.1"
                     /translation="MLSTAKERQLKIVNRLKVEQFMRIIDLVELVNYSEATVKRDLVE
                     LEKEGLVRRTRGGAMIIDNKKIDLPYLMKMNERSNETSKIRIADIAKSLIRDDMVIFL
                     DSSSTSLHLIDVLSKFDGLQIITNGVMTASMLSEFTNARVSILGGSILTKRYTVNGAK
                     AYNDALTYNADIAFVSCRGIDYDKGATETHEGEALIKQAFRRQSSSLVLLVTEEKVGH
                     KFMHQSLACHDIDYLITDFKLDPDVEEQFKTHQITCLY"
     gene            complement(944..1804)
                     /locus_tag="U0342_001095"
     CDS             complement(944..1804)
                     /locus_tag="U0342_001095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketose-bisphosphate aldolase"
                     /protein_id="HEM2422449.1"
                     /translation="MLYTMKDLLAVGKEHQFAVPAFNICSFDMLKAIMEEVEANNAPV
                     ILEIHPDEIEYLGDNFVATVREYAHKSKVPVVIHMDHGGTIKDVMRAIRNGYTSVMID
                     ASRASYEENVALTKQVVELAHKVGVSVEAELGTIGNNGSAEGGADTIIYTDPDQAEDF
                     VQRTGIDTLAVAIGTAHGLYPKDKKPELNMPLLKELNKRLDIPFVLHGGSGNPDKEVS
                     ESVQYGVRKVNLSSDLKSVFFEEVRRVLVDNPAMYEPNQVYPSANEKVKEVVRHKLHI
                     LNTTGQRDKY"
     gene            complement(1804..3198)
                     /locus_tag="U0342_001096"
     CDS             complement(1804..3198)
                     /locus_tag="U0342_001096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM2422450.1"
                     /translation="MKIVGVTACPTGIAHTYMSAEKLTITAEALGYEVKIETQGAKVE
                     NVLTKEDIATADYVILAVDKEIDTSRFAGKKIKKVSTSRAIKEADVVIEETISGKGLI
                     SLEAKSSDISSEQPSKASLYNHFMNGVNYMLPFVIAGGILIAISFAFGIDASNPDSDS
                     YNALAAAFSKIGGDTAFGLMVPALAAGIAVSVAGRAGFAPGLVAGTLATVGGSGFLGG
                     MIGGILAGYVAHFFANKVNVTKSLASIYQLIVVPLLGITIVGLAMVFIIDTPIAWVLN
                     ALTGWLNGLGETSGVVFGLLIGVMMAADMGGPINKSISTFSIGLMSAGVTAPIAACMA
                     AGMVPPLGLALATLLFKNKFTKEEKTAGNSCWVLGASYITEGAIPFAVADPLRVIPSL
                     MLGSATAAAISMGAGVTSMAPHGGIWVMFIPNVINHLFIYLLAIAAGTVVTAISVGLL
                     KTPLNKRKNKEEMI"
     gene            complement(3212..3658)
                     /locus_tag="U0342_001097"
     CDS             complement(3212..3658)
                     /locus_tag="U0342_001097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2422451.1"
                     /translation="MNISNLINEDRIIFDNRIQTKQLLFEKVAEVLGEEGSITNPKKF
                     IRDLYKREEETSTGIEDGFGIPHAKSKYVKEPLIVFVHSGIINDYFGLDDSPIECSFL
                     IGVPKKATDVHLQILSELSRKLMNKEFREKLKNSKNKTEIITILSN"
     gene            complement(3859..4875)
                     /locus_tag="U0342_001098"
     CDS             complement(3859..4875)
                     /locus_tag="U0342_001098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxidoreductase"
                     /protein_id="HEM2422452.1"
                     /translation="MLKMGFIGNGKSTNRYHLPFILERDNIEVKTIYNRNPKTATWDK
                     IEGVHYTTDLDELLKDPEIQLITISTTQSSHFDYAKMVLENGKNVLVEKPFMMTYAEA
                     KEIFELAKERDLLVQCYQNRRFDSDFLTAQKVIESAKLGDLLEVEMHYDYFRPEIPES
                     VHEFKFYDSYLYGHGCHTIDQVLSYFGKPDNIHYDVRQLLGEGRMNDYFDLDLYYGVT
                     KVSVKSSYFRIKARPSFVLYGKKGMFTKETKDRQEEHLKLFYMPSNPDFGIDLPEHYG
                     TLTYVDDAGVWHEEKVISEVGDYGRVYDGLYDAIINGKPKQVTDEETLLQMEILEKGV
                     EACK"
     gene            complement(5079..6599)
                     /locus_tag="U0342_001099"
     CDS             complement(5079..6599)
                     /locus_tag="U0342_001099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavocytochrome c"
                     /protein_id="HEM2422453.1"
                     /translation="MKKRLATTFIMLLSLALIIAGCGSNNTSKSDTEKTKEKEKTEVT
                     SGASKTSYTDPSELKDKYDIVIVGAGGAGMSAALEAKAKGMNPVILEKMPLAGGNTMK
                     ASSGMNASETKFQKEEGINDSNDKFYEETLKGGHGTNDKAMLRFFVDNSASAIDWLDS
                     MDIKLNNLTITGGMSEKRTHRPEDGSAVGKYLVDGLLKNVQEQKIPVFVNADVKEITQ
                     KDGKVTGVKVKLNNKDEKTISSDAVVVTTGGYGANKDMIEKERPDLKGYVTTNQEGST
                     GDGIKMIEKLGGTTVDMDQIQVHPTVQQDKSYLIGEAVRGEGAILVSQEGKRFGNELD
                     TRDNVTASINKLPEKSAYLVFDSGVKDRVKAIAQYEEMGFVEEGKTIDELAGKINVPK
                     EELTKTLDTWNASVKNKKDEAFGRTTAMDNDLSKAPYYAIKIGPGIHYTMGGVKINTN
                     TEVLDKDGKPITGLFAAGEVTGGLHGENRIGGNSVAEIIIFGRQAGDKSAEFVKAQ"
     gene            6836..8362
                     /locus_tag="U0342_001100"
     CDS             6836..8362
                     /locus_tag="U0342_001100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA synthetase"
                     /protein_id="HEM2422454.1"
                     /translation="MTIKKYEPLNLYTNFKKSAERYPEMPIHFDEELVTFPELGLHTT
                     YKKCEEAIIQKAAHLHKFGVRKEEKVIVYKSAKFDSYILAVAISYIGAVPIMVSPHLP
                     ASTIDIFVNRLDQPWLLFDSETSEKSHQLNNLPDSRLINAEQLFKAPLDGYTCEQEEL
                     PKDMIAYMTHTSGTTGVPKLIAHSANSMGWRTKYQRRILNFIKPRGLVAFHISPVHSR
                     FNIGVSSLMSLGFPLLPIANPTKANVEKVLREYKPYVLETHPNHFVQWASLAREKPDV
                     FQSIKFYHSTFDAINKETMAVFLRTSEYKKPIFLQIYGQSECGPMILRGHTLQSIETL
                     NARDMGIGVPGLTEVRIVDQDGNPVPAGVSGNIQMLSKGRALTYYKEEARFEENVYGP
                     WWDSGDYGMKDEQGRLFLQDRQVDLVETIDSTLAIEDKLLDTLTFLDEVVIIRGENGS
                     PQPIIAVHNDGEMNWDAWWKAVSDLPHMNEPMVMKYDEIPRTATMKVQRLQMERELKK
                     "
     gene            complement(8403..10172)
                     /locus_tag="U0342_001101"
     CDS             complement(8403..10172)
                     /locus_tag="U0342_001101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2422455.1"
                     /translation="MKSKGRLFLYVVLALSIVIGTNVFIKIDAHAAAAPPAAISQIFP
                     DDALATEIQTTLGKSSTAEVVTQTDLDTINSLTLTSKGISSLEGMNYLTNLGTLILTG
                     NQVSDISPLKGLTNLTMLQLSGNPISDISALSNLKNLQALDINDAQVTDITPLSGLTN
                     LKGLGLYNNQLENLSGVNSLHQLRSLNVSNNKLTNLDELQALSNLSVLYANENQINNL
                     QGLSNLNNLFLLDLSANQIVDTTPLAGLTKVQTLYVSNNQISDVTGISSLINLDWLDI
                     SQNKISNIRPLNSLTKLTIIQMTNQLIVNEPISFESTVTIPNLIKNIAEQTIDPDTIS
                     DNGVYANEAVTWNLPTYIPKVSYTFIERDTIGNATGNFSGTVEQPLVQYFKATFNIDG
                     QETTENVETGTLLQEPPTPVKEGYTFNGWYDAETGGTKWDFTADTMPANDITLYAQFS
                     INSYTATFDVDGVISTQAVEYQGLLEEPPAPTKDGYTFKGWYDAKTGGTKWDFTNNQM
                     PANDITLYAQFSKDASSGGDGGGTDEGGGNSENSTEGAPNTSDIDTINHIVLPATGDD
                     HVLFPIFIGTFLTSLALLTLRRK"
     gene            complement(10270..10680)
                     /locus_tag="U0342_001102"
     CDS             complement(10270..10680)
                     /locus_tag="U0342_001102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422456.1"
                     /translation="MDYIITTDLPNAEEFVKLRVDAGLSFRSIEVSRQALLKSVYFVG
                     LRSKEDNALIGMGRLVGDGIMFIVSDIAVLPEFQGNGYGKLIMTHIKNYIDSNLDKTA
                     CVTLLADVPADGLYKQFGFRESAPASIGMIYQMK"
     gene            complement(10746..11510)
                     /locus_tag="U0342_001103"
     CDS             complement(10746..11510)
                     /locus_tag="U0342_001103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2422457.1"
                     /translation="MFPFERQNKIIHLLDQNSKITVPELSRILDVSISTIRNDLSSLE
                     ESGMIKKVHGGAVLLKSEEKFTNFNDRIIRNIEEKEAIAKEAATLVKNNQTIILDASS
                     TALALAKELHGFSRLTVITSGLYTAIELKDNPNISVILTGGIVTTNSFTLEGILGANL
                     IENIHADLCFMSAKGFTMEEGLTDFNIYETELKRLLAKRTNKLIALLDHTKMGVISTA
                     SITAAENIDLLITDNKINKALYKKFQDAGLPVKIAE"
     gene            11693..12070
                     /gene="dhaM"
                     /locus_tag="U0342_001104"
     CDS             11693..12070
                     /gene="dhaM"
                     /locus_tag="U0342_001104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS-dependent dihydroxyacetone kinase
                     phosphotransferase subunit DhaM"
                     /protein_id="HEM2422458.1"
                     /translation="MISIVLVSHSQKITEGLQEMIVEMVGDTVHIISSGGTGDGRLGT
                     NAIMIADNIATCTNSEHIYIFCDIGSAILSAETALELLETDLLEKTTIIDAPLVEGAF
                     TAAVQSLVNPSKEAILQELTNVH"
     gene            12155..12586
                     /locus_tag="U0342_001105"
     CDS             12155..12586
                     /locus_tag="U0342_001105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422459.1"
                     /translation="MKFFRGMIGFCIAGMIVMSVWTPLAENYGIFGGYLAAFIIIGPM
                     WFMNHYVGLIENDEDAAFVDMAVGIGICGIMRDVFMQGGGELVSSLPTIGLVAIGAVL
                     AGIVAAAIEKDMAKKQEAKQEKTEPGMNMKEEERLNENQLV"
     gene            12602..12943
                     /locus_tag="U0342_001106"
     CDS             12602..12943
                     /locus_tag="U0342_001106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422460.1"
                     /translation="MSIGIALATIAGGFLFPFAIRMMWGKMVDEWGAIGGWMAAAFIV
                     GTVWTINHGIPKSMIYQSGTVWVDMAVAAGIGVFTASLLTGGKFSKSIVNLAAAVVGG
                     VLGGFLLSLFL"
     gene            12965..13960
                     /locus_tag="U0342_001107"
     CDS             12965..13960
                     /locus_tag="U0342_001107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit DhaK"
                     /protein_id="HEM2422461.1"
                     /translation="MRRLVNDGYEAVEEMLAGYVAAQGKYVDFAENDKRVIVSKQMSE
                     EPRVRIIVGGGSGHEPLFLGYVGKDFADAAVVGNINTSPSPEPCYNAVKAVDSGKGCL
                     YMYGNYAGDVMNFDMGAEMAADDGIRVETVLVTDDIYSAENVEDRRGVAGDLIVFKAA
                     ASAAAKGLDLDAVKQAAEKANANTFSMGVALSSSTLPVTGKAIFEMKEGEMEVGMGIH
                     GEPGIKRTSIEPADKVVDQIMGYLIEEMKLTADEEVHVLINGLGGLPVMDQYICYRRV
                     DEILKEKGVHIHNPLVGNYATSMDMIGMSITLVRLDDELKDLLDTPCDTPYFKVD"
     gene            13982..14632
                     /gene="dhaL"
                     /locus_tag="U0342_001108"
     CDS             13982..14632
                     /gene="dhaL"
                     /locus_tag="U0342_001108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroxyacetone kinase subunit L"
                     /protein_id="HEM2422462.1"
                     /translation="MSELVMDSAFFGHVLQDMGALIEKERDYLTGLDSDIGDGDHGIN
                     LSIGFREVNKQLDELLTASPDIATLLKKSGMILLGKVGGASGPLYGSFFMKCGADVPG
                     KTEVNFDELCGMIINGAAAVQHRGKAELGDKTMMDAFLPGVEVLQNRDTNAAPIETFS
                     AFVDAMHAGAQSTIPLIAKKGRALRLGERAIGHLDPGSESSWMLMNVILENLKKAV"
     gene            14636..15400
                     /locus_tag="U0342_001109"
     CDS             14636..15400
                     /locus_tag="U0342_001109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="triose-phosphate isomerase"
                     /protein_id="HEM2422463.1"
                     /translation="MRKPLVGINMKNYINTRAQTSEWLEATIPLLKNFSDVDTFIFPS
                     MGTLETTANLLAGTSFGFGPQNMAPEKSGPLTGEFSVESIIDLNANYVEIGHAERKNL
                     FHEKTSEIAKKIKLALDEKITPVVCVGEEVRANDTNELKNALKKQIEALFQTINLAQW
                     ENVVLAYEPEWAIGKASSAETNYIESAHQALREIIRELGGDETLVRIIYGGSVSKENA
                     AEIVRQKNVDGLFVGRFGHKPQNFADIVSIVSKTKG"
     gene            15407..15853
                     /gene="rpiB"
                     /locus_tag="U0342_001110"
     CDS             15407..15853
                     /gene="rpiB"
                     /locus_tag="U0342_001110"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2422464.1"
                     /translation="MKIAIGCDEMGYELKQTLITRLKEKNIEFTDFGSFENEKVLYPS
                     IAEKVALEVKNNDYDRGILICGTGIGMAITANKIHGIRAAQIHDSYSAERARKSNDAH
                     IMTMGALVIGPSLAVSLLDTWLDSDFSGGRSQAKVDLMEEIDQKNR"
     gene            15878..16642
                     /locus_tag="U0342_001111"
     CDS             15878..16642
                     /locus_tag="U0342_001111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-threitol dehydrogenase"
                     /protein_id="HEM2422465.1"
                     /translation="MTFKGFDKDFNITDKVAVVTGAASGIGKAMAELFSEKGAYVVLL
                     DIKEDVKDVAAKINPSRTLALQVDITKKENIEKVVAEIKKVYPKIDILANSAGVALLE
                     KAEDLPEEYWDKTMELNLKGSFLMAQIIGREMIATGGGKIVNMASQASVIALDKHVAY
                     CASKAAIVSMTQVLAMEWAPYNINVNAISPTVILTELGKKAWAGQVGEDMKKLIPAGR
                     FGYPEEVAACALFLVSDAASLITGENLIIDGGYTIK"
     gene            16689..17345
                     /gene="fsa"
                     /locus_tag="U0342_001112"
     CDS             16689..17345
                     /gene="fsa"
                     /locus_tag="U0342_001112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEM2422466.1"
                     /translation="MKFFLDTASVSEIKRISELGLVDGVTTNPTIIAKEGRPFEEVIK
                     EICSIVDGPVSAEVIGLEADKMVEEARILAKWAPNVVVKIPMTEEGLKAVHTLTAEGI
                     KTNVTLIFTVSQGLMAAKAGATYISPFLGRLDDIGTDGMILIKNLKKVLDNYGLKAEI
                     ISASIRHIGHLEEAAEAGAHIATIPGSLFPKLWSHPLTDKGIEGFLKDWEAFSQKEGN
                     "
     gene            17347..19344
                     /gene="tkt"
                     /locus_tag="U0342_001113"
     CDS             17347..19344
                     /gene="tkt"
                     /locus_tag="U0342_001113"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2422467.1"
                     /translation="MSRIDEQMVNSIRVLSMDMIEKANSGHPGLPMGAAPMAFSLWKN
                     HLKFNPEHPTWFNRDRFVLSAGHGSAMLYSLLHLFGYDLPMSELKNFRQTGSKTPGHP
                     EFGHTVGVDATTGPLGQGFAMGVGMAMAEAHLGAKFNQPEFPVVDHNTYVLCGDGCLM
                     EGISYEAASLAGHLKLGKLVVLYDSNDISLDGDLNESFSEDIELRFRAAGWQTLRVDD
                     GNDLDALDAAIHLAKTEKSRPTLIEVKTVIGYGSPGKAGKSAAHGSPLGEKELKLAKE
                     AYDWQMPPFELPKTVENQKEFYHSKGRASESSWLRTFNAYKQKYPALAESLQQLMDDN
                     LDADWDAELPVFDENADKAVATREVSGIVLQELEKKLPNLFGGAADLASSNKTHLKAS
                     ERFAPGNYAAKNISFGVREFAMGAAVNGMTLHGGVQAFGATFFVFSDYLRSAIRSAAL
                     MGIPSTFIMTHDSIAVGEDGPTHEPIEHLASFRAMPGLHVIRPADGNETVEAYRYAFT
                     QKEQPTMLVLSRQNLPILPNSAAKAQTGLAKGAYILADSPLDKLDIILLASGSEVHLM
                     TAVRDNLAKKGFGARVVSMPSFDLFDKQSPEYKESVLPKAVKNRFAAEMGASYGWHKY
                     LGDTGQILAIDSFGMSGPGDELARRFGFTVENLTELALKQL"
     gene            complement(19464..19652)
                     /locus_tag="U0342_001114"
     CDS             complement(19464..19652)
                     /locus_tag="U0342_001114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422468.1"
                     /translation="MEERFEKIYTQGKLNIMEIWVDKETGVQYVYHLSGYAGGMSPLL
                     DADGKPLLADLSKLNGAE"
     gene            complement(19696..19764)
                     /locus_tag="U0342_001115"
                     /pseudo
     CDS             complement(19696..19764)
                     /locus_tag="U0342_001115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463869.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic pyrophosphatase"
     gene            complement(19912..20265)
                     /locus_tag="U0342_001116"
                     /pseudo
     CDS             complement(19912..20265)
                     /locus_tag="U0342_001116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009924275.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         5975 a         4100 c         3874 g         6316 t
ORIGIN      
        1 attatcacta ttagatagcg aagaatttaa tgacattcac tttttcggaa gtttattggt
       61 aatacctgtt ttatttttag tacttacgat tatttttgcc tatttaagta taaaatctaa
      121 tacaaacaag taatttgatg ggttttgaac tgttcctcta catctgggtc cagtttgaag
      181 tccgtaatta aatagtcaat atcatgacat gctaagcttt ggtgcataaa cttgtgtcct
      241 actttttctt cggtgacaag taaaacgagc gaacttgact ggcgcctgaa agcttgtttg
      301 atgagtgctt caccttcatg tgtttccgtt gcacctttgt catagtcgat cccccggcat
      361 gaaacaaaag caatatccgc attataagtt aaagcgtcat tgtatgcttt tgcgccgttc
      421 accgtatatc gcttcgttaa aatcgatcct cctaaaatac taactcttgc atttgtaaat
      481 tctgatagca tggaagccgt catgaccccg tttgtaataa tttgcagtcc atcaaattta
      541 cttaaaacgt cgattaaatg cagtgatgtt gagctagagt ctaagaaaat caccatatca
      601 tcgcgaatca gtgatttggc aatatcggca attcttattt tactcgtttc attacttcgc
      661 tcattcattt tcattaaata aggcaaatcg atttttttat tatcgataat cattgcgccg
      721 cctcttgttc gtctcacaag tccttctttt tctaattcta ctaaatcccg tttaacagtg
      781 gcttcgctgt agttgacaag ctccactaaa tcaataatcc gcataaattg ttccactttt
      841 agccggttaa cgatttttag ttgccgttcc ttcgctgtgc ttaacatgtt cctccactcc
      901 ttaaagggca aaagcactat aactagcgct tctacccttc ttattagtat ttatctcttt
      961 gaccagtagt atttaaaatg tgtaatttat gtcttacaac ttcttttact ttttcatttg
     1021 ctgatgggta cacttgattt ggttcataca tcgcaggatt gtccactaaa acgcggcgaa
     1081 cttcttcaaa aaacacactt ttcagatctg aactaaggtt tactttccta acaccgtact
     1141 gtacagattc actgacttct ttatctggat ttcccgaacc accatgaagt acaaacggaa
     1201 tatccaagcg tttatttaat tcttttaaaa gaggcatatt cagttctggt tttttatctt
     1261 tagggtataa accatgcgcc gttccaatag ctacggctag cgtatcaatg ccagttctct
     1321 gtacgaaatc ttctgcttgg tcagggtcag tatatatgat ggtatccgcc ccgccttctg
     1381 ctgaaccatt gttcccgatt gttccaagtt ccgcttcaac agaaacaccg actttatgcg
     1441 caagttcaac cacttgctta gtcaacgcca cgttctcttc gtaactggct cttgaagcat
     1501 caatcatgac agaagtatag ccatttctaa ttgcccgcat cacatctttg attgttccac
     1561 cgtggtccat atgaataacg accggcacct tacttttatg tgcgtattct ctgactgttg
     1621 caacaaagtt atcaccgaga tactctattt catccggatg aatttctaaa attacaggag
     1681 cattatttgc ctccacttcc tccattatcg cctttaacat atcaaaacta cagatattaa
     1741 atgctggtac cgcaaattga tgctcttttc ctactgctaa aagatctttc attgtatata
     1801 acattatatc atctcctctt tattttttcg cttgtttaat ggggttttta atagtccgac
     1861 agaaattgct gtcacgactg tgcctgctgc aattgctagt aagtagataa ataaatggtt
     1921 aattacattt ggaatgaaca tcacccaaat tccaccgtga ggcgccatcg aagttacacc
     1981 agctcccatc gaaattgcag cagctgttgc agaacctaac atcaaacttg ggataacccg
     2041 gagcggatca gcaactgcga aaggaattgc tccttcagta atataagatg cacctaacac
     2101 ccaacaagaa tttcccgctg ttttttcttc ttttgtaaat ttgtttttaa ataatagtgt
     2161 tgcgagtgct aatccaagtg gcggaaccat tccagccgcc atacaagccg caatcggcgc
     2221 cgttacacct gctgacatta acccaattga aaaggttgaa atagatttat taattggccc
     2281 acccatatct gctgccatca tcacaccaat gagtagtcca aatacgacgc cagatgtctc
     2341 accaagccca ttcaaccaac ctgtgagtgc atttaaaacc caagcgattg gtgtatcaat
     2401 aataaatacc atcgccaaac caacaatcgt aatccctaaa agcggtacaa caatcaattg
     2461 ataaatcgaa gcaagtgatt tagtgacatt gactttatta gcaaagaaat gtgccacgta
     2521 accagccaaa ataccaccaa tcataccgcc tagaaatcct gatccaccaa cagtcgccag
     2581 tgtccctgcc acaagcccgg gcgcaaatcc tgctcgacca gccacagaaa ccgctatccc
     2641 tgctgcaagg gctggaacca ttaaaccaaa tgcagtatcc ccaccaattt ttgaaaatgc
     2701 agctgcaagt gcgttatacg aatcagagtc agggtttgag gcatcaattc caaaagcaaa
     2761 actaatagca attaaaatcc cgccagctat gacaaatggc aacatatagt taacaccatt
     2821 cataaagtga ttgtataaac ttgcttttga cggttgttcc gaacttatat ccgaactttt
     2881 cgcctccaaa ctgattaacc ctttaccaga aatagtttcc tcaataacca catcagcctc
     2941 tttaatcgct ctggaagtgg atactttttt aattttcttt ccagcgaacc ttgatgtatc
     3001 tatttcttta tcgactgcta aaatgacata atcagcagtc gcgatgtctt ccttcgttaa
     3061 aacattttca accttagctc cttgtgtctc gattttcact tcgtaaccaa gcgcttctgc
     3121 cgttatagtt aatttctcgg cagacatata cgtatgcgca ataccagtgg gacaagcagt
     3181 aacaccaact attttcatgt gaaacgcctc cttagttcga taaaattgtt ataatttccg
     3241 ttttgttttt ggaatttttt aatttttcac gaaattcttt gttcattaac ttcctcgata
     3301 gttcacttag gatttgcaag tgaacatctg tggctttttt cggaacacca ataagaaaac
     3361 tacattcaat cggtgaatca tctaatccaa aataatcatt tataatgcca gaatgaacaa
     3421 aaacaatcaa tggttctttt acatatttac tttttgcatg agggatgcca aaaccatctt
     3481 caattccagt agaagtttct tcttctcgtt tatataagtc acgtataaat ttttttggat
     3541 ttgttataga accttcttca cctagtactt ctgctacttt ttcaaataat aattgttttg
     3601 tttgaatacg attatcaaaa ataattcggt cttcattaat taaattcgat atattcataa
     3661 tccacatcct ctctcaacaa agtaagcgct tcacttgttt gattacacta tatcacgctg
     3721 aacgacttca ttcaatatta tgggtgtatt atgcaaaaag ttcattttta gagctatttt
     3781 ggttgtttat atgaacgaaa tcaatcattt ttatccaaaa aaattgtccg caagcttgct
     3841 cccgcggaca atttttcatt atttacaagc ttcgacgcct ttttctaaaa tctccatttg
     3901 tagcaaggtt tcttcgtcag ttacttgttt tggtttcccg ttaataattg catcatacaa
     3961 accatcataa acgcggccgt agtcgccaac ctcagagatt actttctcct catgccaaac
     4021 tccggcatca tcaacatacg taagcgttcc gtaatgctct ggtaaatcga ttccaaagtc
     4081 tggattactt ggcatgtaaa atagttttaa atgttcttct tggcggtctt ttgtttcttt
     4141 tgtaaacata ccttttttgc cgtaaaggac aaagcttgga cgggctttta tacggaaata
     4201 gcttgatttt acggatactt ttgttacgcc ataatataaa tcaaggtcga aataatcgtt
     4261 cattcgtcct tcgccgagca gttggcgcac gtcataatgg atgttgtccg gtttgccgaa
     4321 gtaagaaagt acttggtcga ttgtatggca gccgtgaccg tataaataac tgtcgtagaa
     4381 tttaaattca tgaaccgact ctgggatttc tggacggaaa tagtcataat gcatttctac
     4441 ttccaataaa tcgcctaatt ttgcactttc aattactttt tgtgctgtaa ggaaatcgga
     4501 atcgaaacga cgattttggt agcattgaac gagtaaatca cgttctttag ctagttcgaa
     4561 aatttctttc gcttcagcgt atgtcatcat aaatggtttt tcaacaagca catttttgcc
     4621 gttttctaac accattttgg catagtcgaa gtgagagctt tgtgttgtag agatggtaat
     4681 taactggatt tctgggtctt ttaacagctc gtctaagtcg gttgtatagt gaaccccttc
     4741 aattttgtcc catgtggctg ttttgggatt tcgattataa atcgtcttca cttcaatatt
     4801 atcccgctct aaaataaatg gtaaatgata tctattcgta ctttttccgt ttccgataaa
     4861 acccattttc aacatactat ttcctcctta ttttaacaaa ctaacaaatt tagcttaaac
     4921 gctgctaatt tatcagtgta tatatctcac ttgttaccca tccatagtac tacactaacg
     4981 cgctatttag ccaataaaaa acttgctaaa acgtctgttt aaggcgtcct aacaagtttt
     5041 tattttctat taatcacatc actatggtgt atgggttctt attgtgcttt tacaaattct
     5101 gctgatttgt cgccagcttg acgtccgaaa ataatgattt cagcgacaga gtttccgcca
     5161 atacggtttt ccccgtgcaa gccaccagtt acttctcccg cagcaaatag gcctgtgatt
     5221 ggtttaccgt ctttgtctaa aacttctgta tttgtattga tttttacgcc acccattgtg
     5281 taatgaattc ctggtccgat tttgattgcg taatatggtg ctttagataa atcattatcc
     5341 attgcggttg ttctgccgaa tgcttcgtct tttttgtttt tcacacttgc attccaagta
     5401 tctaatgttt tagttagctc ttcttttggt acattgattt tgccggctaa ttcatcaatt
     5461 gttttacctt cttccacaaa gcccatttct tcatattgcg cgatagcttt gacgcggtct
     5521 ttcacgcctg aatcaaatac taggtacgcg gatttttctg gtaatttgtt gatggaagct
     5581 gtaacgttat cacgtgtgtc taattcgttt ccgaaacgtt taccttcttg agagactaaa
     5641 atcgcacctt cacctcgaac ggcttcaccg atgaggtaag atttatcttg ttgaacagtt
     5701 gggtgaactt gaatttgatc catatccact gttgttccac caagtttttc gatcatttta
     5761 ataccgtcgc cagtacttcc ttcttggttc gttgttacat atccttttaa gtctggacgt
     5821 tctttttcaa tcatatcttt attagctccg tagccaccag ttgtgacaac tactgcatcc
     5881 gaactaattg ttttttcgtc tttattgttt aattttactt tcacgccagt tacttttccg
     5941 tctttttgtg taatttcttt tacgtctgcg ttaacgaaaa ccggaatttt ttgttcttga
     6001 acatttttta gtaaaccgtc tactaagtat ttaccaacag ccgagccatc ttcaggacgg
     6061 tgcgtacgtt tttcgctcat tccgcctgtg atagttaagt tgtttaattt aatgtccatg
     6121 gaatccaacc agtcaatggc gctggcggaa ttgtctacga aaaaacgaag cattgcttta
     6181 tcgtttgttc catgaccacc ttttaatgtt tcttcgtaaa atttgtcgtt gctatcatta
     6241 attccttctt ctttttggaa tttagtttca gaggcgttca taccagaaga ggctttcatt
     6301 gtgtttccgc ctgctagtgg cattttttca aggattactg ggttcatgcc tttcgctttt
     6361 gcttctagtg ctgcggacat tcctgcacca cctgcaccaa caataacgat atcgtattta
     6421 tcttttaatt cggatggatc tgtgtaacta gtttttgatg ctcccgatgt aacttctgtt
     6481 ttttcttttt cttttgtttt ctccgtgtca cttttgcttg tgttattgct gccacaacct
     6541 gcgataatta atgcaagcga tagtagcatg atgaaagttg tagctaacct ttttttcatt
     6601 ttcgtacctc cacttttttg aaaattttcc cctagaccaa tagtttgtga ttatattaac
     6661 atattatatc actaattgag atatctttac aggtcatcag gcgaattttc caaaataaga
     6721 aaaaaagcaa tttacagatt tttttacaat gatgtaaatg ttttctatta ctactcctca
     6781 ttatttccac aaagtgatat aatagcaaca tcaaatatta aaggagcatc gccatatgac
     6841 gataaaaaag tacgaaccac ttaacctcta taccaatttc aaaaaatctg ctgaacgcta
     6901 tccagaaatg cccatccatt ttgatgaaga gcttgttact tttcctgaat taggccttca
     6961 cactacttac aaaaaatgtg aagaggctat tatccaaaaa gcagctcatc tacataaatt
     7021 cggtgtacgc aaagaagaaa aagtaatcgt atataaatct gccaaattcg attcttatat
     7081 tttagcagtt gcgatttctt atattggtgc cgtgccaatc atggtttccc cgcatcttcc
     7141 agcgtctact attgatattt ttgttaatcg ccttgaccaa ccttggttac tttttgattc
     7201 tgagacttct gagaaaagtc atcagttaaa caatttacca gacagtagat tgatcaatgc
     7261 tgaacaattg tttaaagcgc cactagatgg ctacacatgc gaacaagaag aattaccaaa
     7321 agatatgatt gcttatatga ctcacacttc tggaacaact ggtgtgccaa aattaatcgc
     7381 tcactctgcg aattcgatgg gttggagaac gaaataccaa cgacgtattc ttaatttcat
     7441 caaaccaaga gggcttgtag ctttccatat ctcaccagta cattctcgtt ttaatattgg
     7501 tgtttcatcc ttgatgtcgc tcggtttccc gcttctgcca attgccaatc cgactaaagc
     7561 aaatgtcgaa aaagtgctac gcgaatacaa accgtatgtg ctcgaaacgc atccaaatca
     7621 ttttgttcaa tgggcatcgc ttgctcgtga aaaaccagac gttttccaaa gtatcaaatt
     7681 ttatcattct acttttgatg cgattaataa agaaacaatg gcggttttcc ttcgtacttc
     7741 cgaatataaa aaaccaattt tcttacaaat ttatggacaa agtgaatgtg gtccgatgat
     7801 tttacgtggt catacgcttc aatccattga aacgctaaat gcgcgcgata tgggaattgg
     7861 tgttcctggt ttaacagaag ttcggattgt tgaccaagat ggtaatcctg ttccagctgg
     7921 ggttagtggt aatattcaaa tgctttccaa aggtcgcgcg cttacttatt acaaagaaga
     7981 agctcgtttt gaagagaatg tgtacggacc ttggtgggat agcggcgatt atggtatgaa
     8041 agatgaacaa ggccggttat tcttgcaaga tcgtcaagtc gatttagtag aaacaattga
     8101 tagtacactc gcaattgaag ataaactgct tgatacgctg actttcttag atgaagttgt
     8161 tatcatccgt ggtgaaaacg gtagcccgca accaattatc gcagttcata acgacggcga
     8221 aatgaactgg gacgcatggt ggaaagctgt ttctgacttg ccacatatga acgaaccaat
     8281 ggtgatgaaa tatgatgaaa tccctcgtac tgcaacaatg aaagtacaac gtttgcagat
     8341 ggaacgagaa ttgaaaaaat aagtttcaaa aaagcagctg cgttatgcag ctgctttttc
     8401 ctttattttc ttctaagtgt aagtaatgct aaactcgtaa gaaatgttcc aataaagatt
     8461 ggaaaaagca catggtcatc tcctgttgct ggtagtacga tgtggtttat agtatctata
     8521 tcactcgtat taggagctcc ctctgtacta ttttcagagt tacctccacc ttcatcggtt
     8581 cctccaccgt ccccaccaga agatgcatct ttactaaact gggcatacaa ggttatatca
     8641 tttgctggca tttgattgtt tgtgaagtcc cattttgttc caccagtttt ggcatcatac
     8701 caacctttaa atgtataacc atccttagtt ggcgctggtg gctcttccag taaaccttga
     8761 tactctaccg cttgagtaga aatgacgcca tctacatcaa aagttgcggt ataactatta
     8821 atactaaact gggcatacaa cgttatatca tttgctggca tcgtatcggc tgtaaagtcc
     8881 cattttgttc cacctgtttc agcatcatac catccgttaa atgtataacc ctctttgact
     8941 ggggttggtg gttcttgtaa aagtgtccct gtttcgacat tttccgttgt ttcttgcccg
     9001 tcaatattga aagttgcttt aaaatattgt actaatggtt gttctacagt cccactgaaa
     9061 tttccagttg cattaccaat cgtatcacgt tcaataaagg tatagctgac tttaggaata
     9121 taagtaggta aattccatgt aacagcttca ttcgcataca caccgttatc gctaattgta
     9181 tcgggatcaa tcgtttgttc cgcaatgttt tttattaaat taggaatcgt tacagtgctt
     9241 tcgaaactta tcggttcgtt tacgattaat tgattagtca tttgaataat tgttagcttc
     9301 gttaaactgt ttaaaggtct aatgttacta attttatttt ggcttatatc gagccaatct
     9361 agatttatta aactcgaaat accagttaca tcactaattt gattgtttga tacgtataat
     9421 gtttgtacct tagttaagcc agcgagtgga gtagtatcca caatttggtt cgctgataaa
     9481 tcaagcaaga aaaggttatt taaattactt agcccctgaa gattgttaat ttggttttca
     9541 tttgcatata gaacgcttaa attgcttagc gcttgtagct catctaggtt cgtaagctta
     9601 ttattactaa catttaagga gcggagttga tgtaaactat ttactccact aaggttctcc
     9661 aattgattat tatataagcc taaacccttt agatttgtta aaccgctcag tggcgtgatg
     9721 tcagtaactt gcgcgtcgtt aatatctaga gcttgtaagt ttttcaagtt actaagtgcg
     9781 ctaatgtcgc taatcggatt tccactcagc tgaagcatgg tcaagttagt taagccttta
     9841 agtggcgaaa tatcgcttac ttgattacca gttaaaatta aagttcctaa attggtcaag
     9901 tagttcatac cttctaggga gctgatacct ttagaagtaa gggttaatga attaatagta
     9961 tctaaatctg tttgagtgac aacctctgct gtactagact ttccgagtgt agtttgaatt
    10021 tctgtcgcta aagcatcatc gggaaaaatc tggctgattg cagctggtgg tgcagcggct
    10081 gcatgtgcgt ctatttttat aaatacattc gtcccaataa caatcgacaa cgccaaaaca
    10141 acgtacaaaa acagtctccc tttggatttc atcttgctcc ccctgacaaa aagtttaata
    10201 gtatcttgtt cccattttct tatcaccaga aacataaaaa aacagcttga gggcgtcccc
    10261 gagctgtttt catttcattt ggtaaatcat tccgattgaa gctggtgcgg actctcgaaa
    10321 accaaattgt ttgtataaac catctgctgg tacatcggca agtaatgtaa cacaagcagt
    10381 tttatctaaa ttcgaatcta tatagttttt aatatgggtc ataattagtt ttccataacc
    10441 attaccttga aattccggaa gcactgctat atcagaaacg atgaacataa ttccatcacc
    10501 aacgagccgc cccatgccaa taagtgcatt gtcctccttc gaacgtagcc ccacaaaata
    10561 cacactcttc aacagagcct gacgtgaaac ttcaatagat cggaaactaa gaccagcatc
    10621 tactcgaagt ttaacaaatt cctccgcatt tggtaaatca gttgtaataa tataatccat
    10681 tttcaatctc ctatcaaaaa aatctctttg aaccaattgt cgcccaaaga gtttcaattt
    10741 ctattttatt ccgcaatttt gacaggaagt cctgcatctt ggaatttttt atataatgct
    10801 ttatttattt tgttatctgt aattagtaaa tcgatgtttt ctgctgctgt aatgcttgcg
    10861 gtggagatta cgcccatttt tgtatgatct aaaagtgcga tcaatttgtt agtacgttta
    10921 gcaagaagtc gttttagttc agtttcataa atgttgaaat cagttaagcc ttcttccatt
    10981 gtaaaacctt ttgctgacat aaaacataaa tcggcatgga tgttttcaat taaattcgcg
    11041 ccaagaatcc cttccagtgt aaaagagttc gtcgtcacaa tcccgccagt taaaataacg
    11101 ctgatattcg ggttgtcttt tagttcgatt gctgtataaa gtccgcttgt tatgacagtc
    11161 agccttgaaa aaccatgtaa ctcttttgca agcgccagtg cagtcgagct ggcatctagg
    11221 ataattgttt gattgttttt tactaaagtt gccgcttctt tcgcaatcgc ttctttttct
    11281 tcgatgttgc gaataatccg gtcattaaaa ttagtaaatt tctcttcgct ctttaaaagt
    11341 accgcacccc cgtgtacttt tttaatcatc ccgctttctt ctaatgaaga taaatcattt
    11401 cggatggtac taatcgagac atccaagata cgacttaatt ctggtacagt tattttgcta
    11461 ttttggtcta gtagatgaat tattttgttt tgtctttcaa atggaaacat ccgctcgccc
    11521 tccttttacc tatcaatgat ttctttatgt atatacatat tacccaaaaa aataacaaaa
    11581 cacaaatata ttttataaaa cacaacaaaa gatagcactt tacaataaaa aacaagtatg
    11641 ttaggatata aatagcaatt aaacacaatt aaaaacagaa aggagcaacc aaatgataag
    11701 tattgtttta gtatctcaca gtcaaaaaat cacagaaggc ctccaagaaa tgattgttga
    11761 aatggttgga gatacagtac atattatttc ttctggcgga actggcgacg ggcgtcttgg
    11821 cacaaatgca atcatgatag ctgataacat cgcgacttgc actaattctg aacatattta
    11881 tattttttgc gatattggaa gcgctatctt aagtgccgaa acagcactcg aattattaga
    11941 aactgacctc cttgaaaaaa caaccatcat cgatgcccca cttgttgaag gcgcatttac
    12001 tgccgctgtt caatctctcg ttaatccatc caaagaagct atcctacaag aactcacaaa
    12061 cgtgcattaa aaacgtaata aaacgcaatt ttgtaactgg gaactatgta aattaatttt
    12121 tacatgacaa tactattttc gaaaggagtt tattatgaaa ttctttagag gaatgattgg
    12181 tttttgtatc gcaggtatga ttgttatgag tgtttggact ccacttgccg agaattatgg
    12241 tatttttgga ggttatctgg cagctttcat tattattggt ccaatgtggt ttatgaatca
    12301 ctatgttggt ttaatcgaaa atgatgaaga cgcagcgttt gttgatatgg ctgtcggaat
    12361 tgggatttgc ggaattatgc gtgatgtctt tatgcaaggt ggtggcgagt tagtaagttc
    12421 gcttccaacg attggtcttg ttgcgattgg agcagttcta gctggaatcg tggccgcagc
    12481 aattgaaaaa gatatggcaa aaaaacaaga agcaaaacaa gaaaaaacag aacctggcat
    12541 gaatatgaaa gaagaagagc gtttaaacga aaatcaatta gtctaaaaag gagtgtaaat
    12601 aatgagcatt ggtattgcat tagcaacgat tgcaggtggc tttttattcc cttttgctat
    12661 tcgaatgatg tggggaaaaa tggttgatga atggggcgct atcggaggtt ggatggcagc
    12721 agcatttatc gttggtacag tttggacaat taatcatggt attccaaaat caatgatcta
    12781 tcaatctgga acagtttggg tagatatggc ggttgcagct ggtattggtg tattcacagc
    12841 ttccctttta acaggcggta aattttctaa atcgatagtc aatttggcag cagctgtagt
    12901 tggcggcgtg cttggcggat ttttactatc actattctta taaaaatatg aaggaggaag
    12961 aaaaatgaga cgtttagtga atgatgggta tgaagcagta gaagaaatgt tagctggtta
    13021 tgttgcggca caagggaaat acgtagattt tgcagaaaat gataagcgag taatcgtaag
    13081 caaacaaatg agcgaagaac cccgtgtgcg gattattgtt ggtggcggtt ctggtcatga
    13141 accacttttc cttggttatg ttgggaaaga tttcgcggat gcggcggtag ttgggaacat
    13201 taatacttcc ccttctccag aaccttgtta taacgcagta aaagccgttg atagcggtaa
    13261 aggttgtcta tatatgtacg gaaattatgc tggcgatgtg atgaactttg atatgggcgc
    13321 tgaaatggct gcggacgacg gtattcgcgt tgaaacagtg cttgtaacag atgatattta
    13381 ctctgctgaa aatgtagaag atcgtcgtgg tgtggctggt gacttaattg tatttaaagc
    13441 agcggcatct gcagcagcaa aaggacttga cctagatgcg gtgaaacaag ctgctgaaaa
    13501 agctaatgca aatacgttct cgatgggtgt tgcgctttct tcttctaccc ttcctgtaac
    13561 tggtaaagct attttcgaaa tgaaagaagg cgaaatggaa gttggtatgg gaatccacgg
    13621 tgaaccagga atcaaacgta cttccatcga accagctgat aaagtggttg atcaaattat
    13681 gggctatctt atagaagaaa tgaaattaac tgcggatgaa gaagtgcatg tacttattaa
    13741 tggacttggc ggtttaccag tgatggatca atatatttgt tatcgccgcg tcgatgaaat
    13801 tttgaaagaa aaaggcgtgc atattcataa cccacttgtt gggaactacg cgacttcgat
    13861 ggatatgatt ggtatgtcga ttacactggt tcgtttagac gatgaactga aagatctttt
    13921 agatacaccg tgcgacacac catatttcaa agtggactaa attactactg gaggaataaa
    13981 aatgagcgaa ttagttatgg atagcgcttt tttcggccac gttttacagg acatgggagc
    14041 gctaattgaa aaagaacgtg attacttaac cggactggac tcggatattg gagacggcga
    14101 ccacggaatc aatcttagta ttggctttcg tgaagtgaat aaacaattag acgaattact
    14161 cactgcttct cccgatattg caacgttgct taaaaaatcc ggaatgattc tccttggaaa
    14221 agttggtggc gcatctggcc cgctttatgg cagtttcttt atgaaatgtg gcgctgatgt
    14281 tcctgggaaa acggaggtta acttcgacga gctttgcggc atgattataa atggggccgc
    14341 tgcggttcaa catcgcggaa aagccgaact tggtgataaa acgatgatgg acgccttctt
    14401 gcctggcgtg gaagtgcttc aaaatcgaga tacaaatgca gctccaatcg aaactttttc
    14461 cgcatttgta gatgctatgc atgctggcgc tcagtccacg atcccactta ttgctaagaa
    14521 aggtcgcgca ctaagacttg gcgaacgagc aattggtcac cttgatcctg gctctgaatc
    14581 gtcttggatg ttaatgaatg tcattttaga aaatttaaaa aaggcggtct gatttatgcg
    14641 taaaccctta gttggaatta atatgaaaaa ctatattaac actcgggctc agacatctga
    14701 atggttagaa gcgactatcc ctcttcttaa aaatttttct gatgtggata cgtttatctt
    14761 tccttctatg ggcacactcg aaacgaccgc caacctttta gcggggacat catttggctt
    14821 tggtccacaa aatatggcgc cggagaaatc cggcccgcta actggtgaat tttcggtgga
    14881 atctatcatt gatctaaacg cgaactatgt cgaaattggt cacgcagaac gcaaaaacct
    14941 ttttcatgag aaaactagtg agatagcgaa gaagattaaa cttgcattgg acgaaaaaat
    15001 cactccggtt gtctgtgtgg gtgaagaagt ccgtgcgaat gatacaaatg aattaaaaaa
    15061 tgcgctaaaa aaacaaatcg aagcgctgtt tcagacaatt aatttagcac agtgggaaaa
    15121 tgttgttctg gcttatgaac cggagtgggc aattggaaag gcgtcttcag ctgagacaaa
    15181 ctacatcgaa agcgcgcatc aagcgctgcg tgaaattatt cgcgaactag gcggcgatga
    15241 aacgctcgta agaattattt acggtggctc ggtcagcaaa gaaaacgccg cagaaattgt
    15301 ccgtcaaaaa aatgtcgatg gtttattcgt cggaagattt ggccataaac cgcaaaattt
    15361 tgccgacatt gtttctattg ttagcaaaac gaaaggatga gttagtatga aaatcgcaat
    15421 tggttgtgac gaaatgggtt acgaactaaa acaaaccctc atcacacgtt taaaggagaa
    15481 aaatattgag tttactgatt tcggcagttt tgaaaacgaa aaagtacttt atccaagtat
    15541 tgccgaaaaa gtagcactag aagttaaaaa caacgattat gaccgaggga tccttatttg
    15601 cggtacaggt attggaatgg ccattacagc aaacaaaatt cacggcattc gcgcagcaca
    15661 aattcatgat tcttattcag cagaacgcgc aagaaaaagt aacgacgcac atattatgac
    15721 catgggagct ctagtaatcg ggccatccct tgccgtatct ctacttgata catggctgga
    15781 tagcgacttt tcgggcggac gctcccaagc aaaagtagat ttaatggaag aaatcgacca
    15841 aaaaaataga taaaaaattt attggaggta atgaaaaatg acttttaaag gttttgataa
    15901 agattttaac attacagaca aagtagccgt ggtaactggg gcagcaagcg ggattggtaa
    15961 agcaatggca gaactttttt ccgaaaaagg cgcttatgtt gtcttgcttg atattaaaga
    16021 agatgtaaaa gatgtcgcag caaaaatcaa tccatcaaga acgctagcac ttcaagtcga
    16081 tattacgaag aaagaaaaca tcgaaaaagt cgttgccgaa atcaaaaaag tctatccaaa
    16141 aatcgatatt ttagccaatt cagctggtgt cgcacttctc gaaaaagcag aagatttacc
    16201 agaagagtac tgggataaaa caatggaact gaacttaaaa ggttcgttcc taatggcgca
    16261 aattatcggt cgcgaaatga ttgcaactgg cggcggtaaa atcgttaata tggcctctca
    16321 agcttctgtt attgcacttg ataaacacgt tgcctactgc gctagtaaag cagcgattgt
    16381 ttctatgacg caagtgctag caatggaatg ggcgccttac aacattaatg tcaatgcgat
    16441 ttccccaacc gttatcttga cggaacttgg caaaaaagct tgggcaggtc aagtcggcga
    16501 agacatgaaa aaattaattc cagccggtag atttggttat ccagaagaag ttgccgcatg
    16561 cgccctcttt ttagtaagtg acgcagcgag ccttattact ggggaaaacc taattatcga
    16621 cggtggttat acgattaaat aaagtattca gctttaaagt tcagctgaga gaatggagcg
    16681 agtaaataat gaaatttttc ttggacacag caagcgtatc ggaaataaaa cgaattagcg
    16741 aacttggttt agtggacggt gtgacaacca atccaaccat catcgcaaaa gaagggcgac
    16801 catttgaaga agtaatcaag gaaatttgtt ctatcgtaga cggtccagtt agcgcagaag
    16861 ttatcggcct cgaagcagac aaaatggtag aagaagctcg aattctagca aaatgggcgc
    16921 caaatgtagt agtaaaaatt cctatgacgg aagaaggttt aaaagcagtc cataccctca
    16981 cagctgaagg cattaaaaca aatgttacgc ttattttcac tgtttcccaa ggattaatgg
    17041 ctgcaaaagc tggcgcgact tatattagcc cgttcttagg aaggctagat gatattggta
    17101 cagacggaat gattttaatt aaaaacttga aaaaagtgct tgataattat ggtctaaaag
    17161 cagaaatcat ttcagcaagt atccgccata tcgggcattt agaagaagcc gctgaagccg
    17221 gagcacatat cgcgactatc ccaggaagcc ttttcccgaa actttggtct catcctttga
    17281 ctgataaagg tattgaagga tttttaaaag attgggaagc gttcagtcag aaagaaggca
    17341 attaatatga gcagaattga tgaacaaatg gttaactcga ttcgcgtatt atcaatggat
    17401 atgattgaaa aagcgaactc cggccatccc ggtttgccga tgggagccgc accaatggct
    17461 ttctcgcttt ggaaaaatca tttaaaattc aatccagaac acccaacttg gtttaaccgc
    17521 gatcgcttcg ttttgtcagc tggtcacggt tcggcaatgc tttatagttt gctacatcta
    17581 tttggttatg atttaccaat gagcgagctg aaaaacttcc gccaaactgg tagtaaaacg
    17641 cccggtcatc ctgaattcgg tcatacggtt ggtgtcgatg caactaccgg tccacttggt
    17701 caaggtttcg caatgggagt tgggatggca atggccgagg ctcaccttgg cgccaaattt
    17761 aaccaacctg aattcccggt tgttgaccat aatacctacg tgctatgcgg agacggctgt
    17821 ttgatggaag gcatttccta cgaagccgca tcccttgctg gtcatttaaa actgggaaaa
    17881 ttagttgttt tatatgattc gaatgatatc tcactggatg gcgatttaaa cgagtctttt
    17941 tcagaagaca tcgaactcag attccgagca gccggttggc aaacgctacg tgtggacgac
    18001 ggaaatgact tagatgcgct tgatgcagca atccatctcg caaaaaccga gaaatcccgc
    18061 cctactttaa tcgaagtgaa aacggtcatc ggttacggta gccctggtaa agccggaaaa
    18121 tcggcggcac acggctcccc acttggcgaa aaagaactca aacttgcaaa agaagcttac
    18181 gattggcaaa tgccaccttt tgaattacca aaaactgtcg aaaatcagaa agaattttat
    18241 cattctaaag gtcgcgcgag tgaaagcagc tggctccgga cattcaatgc ttacaaacaa
    18301 aaatatccag cactcgcaga aagtttgcaa caattaatgg atgataattt ggatgcggat
    18361 tgggatgcag aacttcctgt cttcgatgaa aatgcggata aagccgttgc aacccgtgaa
    18421 gtatcaggaa ttgttctaca agaattggag aaaaaactgc ctaacctatt tggtggcgcg
    18481 gccgatttgg cctcctccaa taaaacccat ttaaaagcta gcgaacggtt tgctccaggt
    18541 aactatgccg ccaaaaatat ctcattcggc gtccgcgagt tcgcaatggg agcagcagtc
    18601 aacggaatga cgcttcacgg cggtgttcaa gctttcggcg caaccttctt cgtattctcg
    18661 gattatctac gttccgcgat tcgttcagca gctttaatgg gcattccatc cactttcatc
    18721 atgacccatg attccatcgc agtcggtgaa gacggtccaa cgcacgaacc aatcgagcat
    18781 ctcgcatcct tccgcgccat gccgggactt cacgtcatcc gaccagctga cggcaacgaa
    18841 accgtcgaag cataccgcta tgcctttact caaaaagaac aaccaaccat gctcgttctt
    18901 agccgccaaa acctgccaat tttaccaaat agcgcagcaa aagcgcaaac cggacttgca
    18961 aaaggtgctt acatcttagc cgattccccg cttgataaac tagatattat cttactcgct
    19021 tctggatccg aagtacacct aatgacagct gtcagagata atctcgctaa aaaaggcttc
    19081 ggagcacgcg tagtcagcat gccaagcttt gatttattcg acaaacaaag ccctgaatat
    19141 aaagagtccg ttttaccaaa agcagtgaaa aatcgcttcg ccgcagaaat gggcgcatca
    19201 tacggctggc acaaatacct cggcgacaca ggccaaatcc tcgcgattga ttcgtttggt
    19261 atgtctggcc cgggagatga gctagcaaga cgatttggct ttactgtaga gaacttgacg
    19321 gagcttgcgt tgaagcagtt gtaggtatgg aataaacttt ttaacagtaa ccaatcaagt
    19381 actcgggcat aaaaaagcag gcattctcta tttagaaaga agagaatgcc tgtatttatt
    19441 tgactagaaa tcaatttccc actttactca gcgccattaa gcttagataa atcagcaagt
    19501 agcggtttcc catctgcatc caaaagtggt gacattccac ccgcataacc agacaaatgg
    19561 taaacatatt gcacaccggt ttctttatca acccaaattt ccataatgtt gagttttcct
    19621 tgggtataaa ttttttcaaa tctttcttcc attgttttcc gcctcctgtt ttaaggttgc
    19681 acgcattatt ccaccctaaa tcaatttaat ttccgaatca aaatattgct caataaaatg
    19741 tactttctct ctaatttcct ctatttaaag tatcctgttt taaccaactt aaagcctact
    19801 tctataaatt taaattttta atatcaacaa tttctggcat tcacttaatt gtaggcaatt
    19861 cctttttcaa agagcacata gaatttacac ctaattccat agactaagaa actatttccc
    19921 caataaataa tctagctctt catctgtcca ttgttgatga atcaatccct ttatctcatc
    19981 agataatcgt aaaacctctt tccattctgg cgttgttctc aatgctttta ccacagaatt
    20041 cctccatcaa gttcaaaaag tttagtttgc agctgcttgc ttagtaaaga aagccctcta
    20101 tcaattatgt cattatccac caacaattcc ctagtatatg gactcaaagc agctggataa
    20161 tcaattgcta actcttcaaa tatttcatat tcaatttctt cgtcggataa attaattgta
    20221 tgcaatccta acatacatag cgaagaaagg taatattcaa aagac
//
LOCUS       DASEAA010000037        18170 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.037, whole genome shotgun sequence.
ACCESSION   DASEAA010000037 DASEAA010000000
VERSION     DASEAA010000037.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 18170)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 18170)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..18170
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.037"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..948
                     /locus_tag="U0342_001117"
     CDS             <1..948
                     /locus_tag="U0342_001117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464836.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2422469.1"
                     /translation="LYLYCRNKLKNSTNSYIIMDESLKIKNIHALRTQRAIKLSRLAT
                     YKLIMNGTPLSRNILDLWSQLEFLSPKILNLSFSQFKKTFCEYVTITQLTQSTQQSMD
                     IIKKYHNLEYLYKLITPFIFTSSHELAVKWHYIRHDFSIDEELLKQYYEIKEDYLQKA
                     AAYTININFLEMSQVMQHCYCLSSEKFTITESLIAGKEETTIIFCKYRRSEEALQQAF
                     PNVKITTFAKSSYGLNLQFYNQIIYFDKTFDYSQRDQSERRIYRTGQTQDCYYHDLSG
                     NVGLDSLIDTNISKKTSLLQEFKKELSQKNSFEVIMDAF"
     gene            938..2242
                     /locus_tag="U0342_001118"
     CDS             938..2242
                     /locus_tag="U0342_001118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3440 domain-containing protein"
                     /protein_id="HEM2422470.1"
                     /translation="MLSRTVFDASQERMEAIFSEFDNIIVSFSGGKDSAVMLHLMIDY
                     MRKNNIRKKIYVYHLDYEGQYSATTDFVTEMLTTNLDIIEPLWCCLPIAAQSAVSMFT
                     DHWKPWEKTKQNIWVRDMPTFPHVINEDNAPFDFDFENLWDYEFNKKIINWLHTKNNA
                     QKTIALIGIRQQESLNRYNAIHKKERMYKTYNWTTEISKNIYNAYPIHDWQVEDIWVA
                     NAKFNWSYNKIYDLFYHAGLTVHEMRVASPFNDAATESLKLYRVIEPALWSKLVGRVN
                     GANFTAIYGGTSAMAWKEIKLPKNHTWKSYLEFLLTTLPSYTRERYLKKFKTSITYWT
                     EKGGALKVEIVEELKNLDIQADFLGKPQNNRVYTNPMEIVRFKEYPDDLKIKEFASVP
                     TYKRMCIAILKNDYTCKYMGFGQTKLELEKRKNALEKYNNIL"
     gene            2252..2758
                     /locus_tag="U0342_001119"
     CDS             2252..2758
                     /locus_tag="U0342_001119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB-like nuclease domain-containing protein"
                     /protein_id="HEM2422471.1"
                     /translation="MNYKSPVYSVTPIHYTKLQANNYNPNTVPATELKLLEKSIWEDG
                     FTQPIVCYPLEDSDKYEIIDGFHRYTIMRTSKRIRERENEFLPVVILEKDTVNRMAST
                     IRHNRARGFHNVELMSNIVSELVDSGMSDSWIMKNIGMDANEILRLKQVSGLAHLFLD
                     KEFSHTSD"
     gene            2780..3511
                     /locus_tag="U0342_001120"
     CDS             2780..3511
                     /locus_tag="U0342_001120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2422472.1"
                     /translation="MKENKYDDKHFFEQYSQMPRSKEGLKAAGEWHELKKMLPDFNQK
                     TVLDLGCGFGWHCIYAAEHGAKKVLGIDLSERMLTEAKRKTTSPVVCYEQKAIEDIAI
                     EPDAYNVVLSSLALHYIASFDDICKKVYINLKSSGSFIFSVEHPVFTADGRQDWYTDE
                     TGNKLHWPVDRYFNESMRTSHFLGEDVQKYHRTVTTYIQTLLKNGFQINSVIEPEPAP
                     ELKDLPEMQDEYRRPMMLLISATKQ"
     gene            complement(3560..3799)
                     /locus_tag="U0342_001121"
     CDS             complement(3560..3799)
                     /locus_tag="U0342_001121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YneF family protein"
                     /protein_id="HEM2422473.1"
                     /translation="MWIYILVGIICLLAGLAGGFFIARRYMMSYLKNNPPINEQMLQM
                     MMAQMGQKPSQKKINQMMSAMNKQQEKEKPKKTKK"
     gene            complement(4020..6014)
                     /gene="tkt"
                     /locus_tag="U0342_001122"
     CDS             complement(4020..6014)
                     /gene="tkt"
                     /locus_tag="U0342_001122"
                     /EC_number="2.2.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2422474.1"
                     /translation="MFDNTDSLAVNTIRTLSMDAIQKANSGHPGLPMGAAPMAYALWS
                     RVLNTNPKNSHWFNRDRFVLSAGHGSMLLYSLLHLSGFKLELEDLKNFRQWESKTPGH
                     PEYRYTDGVDATTGPLGQGIAMAVGMAMAERHLEAKYNKDGFPVVDHYTYALCGDGDL
                     MEGVASEAASYAGHQQLGRLVVLYDSNDISLDGDLDKSFSENVKQRFEAYGWEHLLVK
                     DGNDTAEILAAIEKAKQNTSQPTMIEVKTVIGFGAPNAGTSKVHGAPLGDEGILEAKK
                     AYGWNYEEKFFVPEEVTARFKETIGERGEKAETAWNELFASYKAEYPELAKQLEDSLN
                     NKLPADWDEDLPVYDDSKALASRASSGEVINALAGKIPTIFGGSADLAGSNNTTIKTD
                     GEFTKATPAERNIWFGVREFAMGAALNGMALHGGLQVYGGTFFVFSDYVRAAIRLSAI
                     QHLPVTYVMTHDSIAVGEDGPTHEPIEQLASLRAMPGLSVIRPADGNEVVEAWKLAIT
                     STSTPHVLVLTRQGLPTLPNSAKLTAEGVKKGAYVISPAKGDVPEAIILASGSEVNLA
                     IEAQKELQAQGTDVSVVSVPSFDLFEQQSAEYKESVLPNAVRKRVAVEMGASFGWERY
                     VGLDGKVIGIDKFGASAPGETVIKNYGFTVENVVNTVKSL"
     gene            complement(6161..6388)
                     /locus_tag="U0342_001123"
     CDS             complement(6161..6388)
                     /locus_tag="U0342_001123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HEM2422475.1"
                     /translation="MLEKAKIDRINELSKKKKAGTLTATEKVEQDNLRKEYIKSFRTH
                     MKGTIENTTIIDPNGKDVTPHKVKQLRKNKH"
     gene            complement(6482..6811)
                     /gene="yneA"
                     /locus_tag="U0342_001124"
     CDS             complement(6482..6811)
                     /gene="yneA"
                     /locus_tag="U0342_001124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division suppressor protein YneA"
                     /protein_id="HEM2422476.1"
                     /translation="MTMKLIWDKFYVSIIFVLTCIILGIILMCTVVGGGNDYSEVNVS
                     EGDSLWALADQYAGKSDMAKADFVSWVEKENNLADGHVEAGDSVVIPVHKTKLIKSDS
                     TIQLANQ"
     gene            6968..7582
                     /gene="lexA"
                     /locus_tag="U0342_001125"
     CDS             6968..7582
                     /gene="lexA"
                     /locus_tag="U0342_001125"
                     /EC_number="3.4.21.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional repressor LexA"
                     /protein_id="HEM2422477.1"
                     /translation="MKISKRQQDIYEFIKSEVKEKGYPPSVREIGEAVGLASSSTVHG
                     HLARLEGKGLIRRDPTKPRAIEILSLEDEAETPNVVNIPIIGKVTAGMPITAIENIDE
                     YFPLPEYMAAGETNVFMLEIDGESMINAGILDGDKVIVRQQSSAINGEIVVAMTDENE
                     ATCKRFYKEANHFRLQPENDALEPILLNNVTILGKVIGLYRDIR"
     gene            7613..8137
                     /locus_tag="U0342_001126"
     CDS             7613..8137
                     /locus_tag="U0342_001126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422478.1"
                     /translation="MIYFETERLIARDYLASDYLPFSQMNADEQVMKYFPARLTQNES
                     NAFLDRIQEELKSLGYGLFAIEVKSTGEFIGFTGFHEATFEATFTPCTEIGWRLKHSA
                     WNQGYATEAALGALAFAEEINTINEIYSFTAALNKPSENVMKKIHLTKIATFEHPALV
                     NGDPLKPHVLYKKA"
     gene            complement(8171..9466)
                     /locus_tag="U0342_001127"
     CDS             complement(8171..9466)
                     /locus_tag="U0342_001127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic transporter"
                     /protein_id="HEM2422479.1"
                     /translation="MQITLAILVFAFTLFFVIWQPRKLSIGWSACGGALIAILLGVVT
                     LSDVATVTGIVWNATLAFIAIIIISLILDKIGFFEWAALHMARLARGNGLLMFILISI
                     LGAFVAALFANDGAALILTPIVLAMVRALNFDEKKVFPFIIASGFIADTTSLPLVVSN
                     LVNIVSADFFGISFSQYALIMWIPTLFSLVASILILYFYFRKALPKKYDMRVIREPAS
                     AIKDKKMFRVSWGILIILVAGYFLSSFLDIPVSFIALLVAVIFLLVSAKSHAVSTKAI
                     LKGAPWNIVFFSVGMYVVVYGLQNVGITKLLSEAITYVAHFGLFAGTVGMGFIAAILS
                     SVMNNLPTVMINALAIDHTSFTGVMKEALVYANVIGSDLGPKITPIGSLATLLWLHVL
                     AQKGIKISWGSYFKIGIVITIPVLFITLVGLYFSLLIWN"
     gene            complement(9610..10944)
                     /gene="glnA"
                     /locus_tag="U0342_001128"
     CDS             complement(9610..10944)
                     /gene="glnA"
                     /locus_tag="U0342_001128"
                     /EC_number="6.3.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I glutamate--ammonia ligase"
                     /protein_id="HEM2422480.1"
                     /translation="MAKYTKEDIFRFADEQNVKFIRLQFTDILGIIKNVEIPVSQLKK
                     ALDNKIMFDGSSIEGFVRIEESDMYLFPDLDTWVVFPWTAEKGKVARMICDIYNPDMT
                     PFAGDPRANLKRVLKEMEELGFTEFNLGPEPEFFLFKLDENRRPTLELNDSGGYFDLA
                     PTDLGENCRRDIVLELEEMGFEIEASHHEVAPGQHEIDFKYEDAVTACDSIQTFKLVV
                     KTIARKHGLHATFMPKPLFGVNGSGMHFNMSLFNEKGNAFFDESGELELSQTAYHFLA
                     GMLKHARGYTAVTNPTINSFKRLVPGYEAPCYIAWSGKNRSPLVRVPSSRGLSTRLEL
                     RSVDPSANPYLAMAVLLKAGLSGIKDELTPPAPVDRNIYGMNEEEREATGIYDLPESL
                     GHALIELEKDDIIKAGLGEHIFEHFIEAKTIECDMFRTAVHPWEREQYLEIY"
     gene            complement(11015..11383)
                     /locus_tag="U0342_001129"
     CDS             complement(11015..11383)
                     /locus_tag="U0342_001129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2422481.1"
                     /translation="MSEKEIRRSMPLFPIGPVMKLTDLTARQIRYYEDQGLIHPARNQ
                     GNHRLYSLQDIDVLLEIKDYLNDGLNIAGIKKMYQMQQKESKEPLTDDDVRKILRKEM
                     QQAGRFVKQDATGKQQLPRF"
     gene            complement(11585..12811)
                     /locus_tag="U0342_001130"
     CDS             complement(11585..12811)
                     /locus_tag="U0342_001130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine gamma-lyase family protein"
                     /protein_id="HEM2422482.1"
                     /translation="MNNIQAIRKKVETQIDDLQNKTDEIAEFNQAKVLDAFQENKVSD
                     FHFHPSTGYGYDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGILRPDDE
                     LLYITGQPYDTLEEIVGIRKQGQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMTPKTK
                     MIGIQRSRGYADRPSFTIEKIKEMIVFVKNINPEVIVFVDNCYGEFVEYQEPPEVGAD
                     IIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSLLEMYQGF
                     FLAPHVTAQAIKGARFTAAMLAEFGVEADPVWDAPRTDLIQSVSFHNKEKMVAFAQAI
                     QAASPVNAHVLPIGAYMPGYEDDVIMAAGTFIQGASLELTADGPIREPYQLYVQGGLT
                     YEHIKIAVTRAIQKIV"
     gene            complement(12804..14027)
                     /gene="hflX"
                     /locus_tag="U0342_001131"
     CDS             complement(12804..14027)
                     /gene="hflX"
                     /locus_tag="U0342_001131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM2422483.1"
                     /translation="MEREKIILVGVILPNKTEEAFWNSMNELHSLAKTANGEVVDELI
                     QKLERVNQASFIGSGKLEELATLVEMHEADVVIFNSELSATQVRNISKAVDARIIDRT
                     QLILDIFAMRAKSKEGKLQVAYAQYKYLLPRLSGQGVSLSKLGGGIGSRGPGESKLEM
                     DKRHIREKMHDIKAQLTHVEQHRKRIIERRNIQSVFRFGLIGYTNAGKSTIFNRLTNE
                     TTLQEDKLFATLDPTTRKIRFSGGFQALLTDTVGFIQDLPTTLIAAFRSTLEETANVD
                     VLIHVVDASNPDYLQHETTVISLLEELEMNHLPTLVIYNKMDHAPATFVPDQPENLLI
                     SALDQEAPDTIKQRMIQLIEKNWAFFTLELSEEKGKELAQIKQQAWVTKLEYIESKQS
                     YHIEGYKPRKELNNE"
     gene            complement(14138..14371)
                     /gene="hfq"
                     /locus_tag="U0342_001132"
     CDS             complement(14138..14371)
                     /gene="hfq"
                     /locus_tag="U0342_001132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA chaperone Hfq"
                     /protein_id="HEM2422484.1"
                     /translation="MKQGGQGLQDYYLNQLRKEKILATVFLTNGFQLRGRVVSFDNFT
                     VLLDVEGKQQLVFKHAISTFSPQKNVALNPDAE"
     gene            complement(14493..15410)
                     /gene="miaA"
                     /locus_tag="U0342_001133"
     CDS             complement(14493..15410)
                     /gene="miaA"
                     /locus_tag="U0342_001133"
                     /EC_number="2.5.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenosine(37)-N6)-dimethylallyltransferase
                     MiaA"
                     /protein_id="HEM2422485.1"
                     /translation="MSKIPVIVIVGPTAVGKTSLSIELAKKLDGEIISGDSMQVYRGL
                     DIGTAKITPEEMDGIKHYLIDVTNPSEPFTAAKFQIETRKCIETIHQAGRLPIIVGGT
                     GLYIQSVFYDYDFGNVSEDKAYRAELEQLDKTVLWQMLEQKDPESAAQIHENNKRRVI
                     RALEVMHLTGKPFSEYQVNNVLNDRYQPLFLGLDLDRALLYERINQRVNLMFEEGLVT
                     EAKKLYEQHLVDVPAVRGIGYKELFPYFEGKSSLEEAKELIQKNSRHFAKRQLTWFRN
                     RMDIDWIQAGVSSTESEALNKATTFLTAK"
     gene            complement(15537..17213)
                     /locus_tag="U0342_001134"
     CDS             complement(15537..17213)
                     /locus_tag="U0342_001134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate dehydrogenase/oxidase"
                     /protein_id="HEM2422486.1"
                     /translation="MVQLFSAFDRETIERNLQEEKFDLVIVGGGITGAGIALDATSRG
                     MSVALVEMGDFASGTSSRSTKLVHGGLRYLQQFEIKEVADLGKERAIVYENGPHVTTP
                     EWMMLPFHKGGNMGKTTASFGIRLYDYLAGVKKNERRKILSAKETLAKNPFVKKDGLK
                     GSGYYVEYRTDDARLTIEVMKKAVELGANAINYTKAEHFLYDDNKQVVGVTVTDRLSG
                     KAYDIKGHRVINAAGPWVDKVRKLDYATNNKHLRLTKGIHLVIDKQKFPMEQAVYFDT
                     PDGRMVFAIPRDKKVYVGTTDTVYDEAVINPKALESDHNYVIKAINYMFPDVHITEKD
                     IESSWAGVRPLIYEEGKDPSEISRKDEVWFSESGLITMAGGKLTGYRKMAEKLLDDVS
                     KTLAKETGKKYKTVQTKHLPISGGDIGGSEQLEAFLSKKAKEGNNRFGWTLEEGREMA
                     KRFGSNIDQLFTYAQEHKEQNETTLPNSLYAELRYSIQHEAVTTPIDFLLRRTGYLLF
                     DMPYLLEWKDAVVDEMAKQFHWSDDVKQTYIEELNIQINDAREPADWHDR"
     gene            complement(17446..18144)
                     /locus_tag="U0342_001135"
     CDS             complement(17446..18144)
                     /locus_tag="U0342_001135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM2422487.1"
                     /translation="MTEIFAHRGSSGTHPENTLPAMKAAILSGADGIELDIHVLKSGE
                     LIVMHDERVDRTTNGSGFLKDYTLSEVKKLVIGKRLFRKIRVPTLEEIFKLVSGTDMI
                     LNIELKTDVFEYEGIEQKVLALADKFPEVKRMYSSFNPDTLIRLRDLDPTARLALITH
                     ENLDEVLPLHEKIQLDAVHPPVKAMKNPILKQIAARYWTVNKEETITHFIDANVKGMM
                     TDFPEKAVALRNNK"
BASE COUNT         5603 a         3687 c         2992 g         5888 t
ORIGIN      
        1 ttatacctgt attgccgaaa caaactcaaa aattccacca atagttacat tattatggat
       61 gaaagcctaa agataaaaaa tatccatgca cttcgaacac aacgagcgat taaactttct
      121 cgtctggcta cctataaatt aattatgaac ggcacacctc ttagtcgtaa tattttggat
      181 ttatggtcac agctagaatt tctatctcct aaaatattaa atctaagttt ttcccagttc
      241 aaaaaaactt tttgcgaata cgtcaccatt acacaactaa cacaaagtac gcaacaatca
      301 atggatatca ttaaaaaata tcataattta gagtacttat ataaattaat cacccctttt
      361 atatttactt cttcgcacga attagccgtc aaatggcatt atattcgtca tgatttttcc
      421 attgatgagg aacttttaaa gcaatattat gaaataaaag aagactatct ccaaaaagct
      481 gccgcatata caatcaacat taatttttta gaaatgtctc aagtaatgca acattgttac
      541 tgtctttctt ctgaaaaatt tactattaca gaatcattaa ttgccggaaa agaagaaaca
      601 acgattattt tttgcaaata cagacgttca gaagaggcat tgcagcaagc atttccaaat
      661 gtaaaaatta ctacttttgc caaatcttct tacggactca atttgcaatt ttataatcaa
      721 attatttatt ttgataaaac gtttgattat tctcagcgtg atcaatcaga aaggcggatt
      781 tacagaactg ggcaaacaca agactgctac tatcatgatt taagcggtaa tgtcggtctg
      841 gattctctta ttgatacaaa tatttctaag aaaacaagct tattgcaaga atttaaaaaa
      901 gaactatcac aaaaaaattc ttttgaggtg ataatggatg ctttctagaa cagtctttga
      961 tgcttcccaa gaaagaatgg aagcgatttt ttctgaattc gataatatta ttgtgtcgtt
     1021 ttcgggtggt aaagatagcg cagtaatgct ccatctcatg attgactaca tgcggaaaaa
     1081 taatattcgc aagaaaatat atgtatatca tttagattat gaaggtcaat acagcgctac
     1141 aactgatttt gttactgaaa tgcttacaac taatttagat atcatcgaac cactttggtg
     1201 ttgtcttccc atcgcggcac aatcagctgt ttcgatgttc accgaccact ggaaaccgtg
     1261 ggaaaagacc aagcaaaaca tctgggttag agatatgccc acctttccac acgtgattaa
     1321 tgaagacaat gccccgtttg actttgattt tgaaaacctt tgggattatg aatttaataa
     1381 aaaaataatt aactggttac atactaaaaa taacgcccaa aaaaccattg ctttgattgg
     1441 tataagacaa caagaatctc ttaatcgcta taacgcaatt cataaaaaag aacgaatgta
     1501 taaaacatac aattggacga ccgaaatttc caaaaacatt tacaacgcct atccaattca
     1561 cgattggcaa gtagaagata tatgggtcgc aaatgcaaag ttcaattggt cttataataa
     1621 aatttatgat ttattttatc atgctggcct aactgtgcac gagatgcgtg tcgccagtcc
     1681 ttttaacgat gctgctacag aaagtcttaa actgtacagg gtcatcgaac ctgcgctttg
     1741 gtccaaatta gtcggccggg tgaatggcgc caatttcact gccatatacg gtggcacttc
     1801 cgcaatggct tggaaagaaa ttaaactacc taaaaatcat acttggaaat catatttgga
     1861 atttttactc acaactttac caagttacac tagagaacgc tatttaaaaa aattcaaaac
     1921 aagtattacc tattggaccg aaaaaggtgg tgctttaaaa gtagaaattg tagaagaatt
     1981 aaaaaattta gatatacaag cagacttcct aggtaaacca caaaataacc gagtatatac
     2041 taatccaatg gaaatcgttc gttttaagga gtatccagac gatttgaaaa tcaaagaatt
     2101 cgcaagcgtt cctacctaca aacgcatgtg catagcaata ttgaagaatg attatacctg
     2161 caaatatatg ggattcggcc aaacaaaatt ggaattagaa aaaagaaaaa acgcattaga
     2221 gaaatataat aatattttat gaggtgaact aatgaattac aagagcccag tatatagcgt
     2281 tactcccatt cactacacaa aattacaagc aaataattat aatcccaaca ctgtccccgc
     2341 aaccgaactc aaactacttg aaaaatcaat ttgggaagat gggtttacgc aaccaattgt
     2401 ttgttatccc ttggaagaca gcgataaata tgaaataata gatgggttcc accgttacac
     2461 tatcatgaga acctctaaac gaattcgaga acgagaaaat gaattcttac cagtagtcat
     2521 cttagaaaag gacaccgtga atcgaatggc ctctacaata cgtcataatc gtgcgcgcgg
     2581 atttcataat gtcgaattaa tgtccaacat tgttagtgaa cttgtagata gcgggatgtc
     2641 cgatagttgg attatgaaaa atattggaat ggatgctaat gaaatcttac gcttaaaaca
     2701 agtgagcgga cttgctcacc tcttcttaga taaagaattc agtcacacat ctgattaatt
     2761 gatgaaaaga ggtttaataa tgaaagaaaa taaatacgat gacaaacatt ttttcgaaca
     2821 atatagccaa atgcctcgct cgaaagaagg attaaaagca gctggtgaat ggcatgaact
     2881 taaaaaaatg cttcctgatt ttaaccagaa aacagtcctt gatttagggt gtggctttgg
     2941 atggcactgt atctatgcag ctgaacatgg tgcaaaaaaa gtacttggta tcgatttatc
     3001 cgaaagaatg cttactgagg ctaaacgaaa aactacatcg ccagtggttt gttacgagca
     3061 aaaagccata gaagatatag ctattgaacc agatgcatac aatgttgttc tgagttccct
     3121 tgcacttcat tacattgctt cttttgacga catttgtaag aaagtctata ttaacctaaa
     3181 atctagtggg tctttcattt tctctgtaga acatccggta tttacggcag atggaagaca
     3241 agattggtat acggatgaaa caggtaacaa attacattgg cccgttgacc gatattttaa
     3301 tgaatctatg cgaacaagcc attttcttgg agaagatgtc caaaagtatc accgaacagt
     3361 tactacttac atccaaacat tactgaaaaa tggctttcaa attaatagtg ttatcgaacc
     3421 ggaaccagct cctgaattaa aagatttacc cgaaatgcaa gacgaatacc gccgcccaat
     3481 gatgctactc atttcagcaa cgaaacaata ataaaaaacc ccttctaaat caatagaagg
     3541 ggtttacttt gttaaaatat tatttcttag ttttctttgg tttttctttt tcttgctgtt
     3601 tgttcatcgc actcatcatt tgattgattt tcttttgtga tggtttttga cccatttgtg
     3661 ccatcatcat ttgtaacatt tgttcgttaa ttggcggatt gttttttaaa tagctcatca
     3721 tgtaacgtct tgcaataaag aatcctcccg caagaccagc tagtaaacaa ataatgccga
     3781 caagaatgta aatccacata gtctcttttc tcctccttga aacaaaatcc tcttttattg
     3841 tacttgattt atattaaaca gacaatactt ttcaagaaaa cttatcatct agatcaattt
     3901 atcaataaaa gctgcaaaca acctcgtaat tataccatta atggtactac ggcgcaatct
     3961 aaaaaaagca taaaaaaaca gaccgctcta gaaaaattag caacggtctg tttgtttaat
     4021 taaagtgatt ttactgtatt aactacgttt tcaacagtaa agccgtaatt cttaataact
     4081 gtttcacctg gagcagaagc accaaatttg tcaattccga taactttacc atctaaacca
     4141 acataacgtt cccatccaaa gctagcgccc atctctactg ctacacgttt tctaacagca
     4201 ttcggtaata cactttcttt gtactcagca gattgttgct cgaatagatc aaatgatggc
     4261 acactgacaa ctgatacatc tgttccttga gcttgaagtt ctttttgcgc ttcaatagct
     4321 aagttaactt cagaaccact cgctaggatg attgcttctg gcacgtcacc tttagctggg
     4381 gaaataacat aagcaccttt tttaacgcct tctgcagtta atttagcaga atttggtagt
     4441 gttggtaggc cttgacgagt aagaacaagt acatgcggtg tagatgtaga agtgatagca
     4501 agtttccaag cctccacaac ttcatttcca tcagcaggac gaataacaga aagccctggc
     4561 attgcacgta agcttgcaag ttgttcgatt ggctcatgtg ttgggccatc ttccccaact
     4621 gcaatactat catgcgtcat tacataggtt actggtaaat gttgaatagc tgataaacga
     4681 atagcagcac gtacatagtc agagaatacg aagaatgtac caccgtatac ttgtaatccg
     4741 ccgtgaagtg ccataccatt taatgcagcg cccatcgcaa attcacgaac accaaaccaa
     4801 atgtttcttt cagctggagt cgcttttgta aattcaccgt ctgttttaat tgttgtatta
     4861 ttcgaacctg caaggtcagc agatccgcca aaaatagttg ggatttttcc agctaacgca
     4921 ttgataactt ctccactgga agcacggcta gcaagtgctt ttgaatcatc atatactgga
     4981 agatcctcat cccaatcagc tggtaacttg ttgttcaagc tatcttctaa ttgtttcgca
     5041 agctctggat attctgcttt ataggaagca aataactcat tccaagctgt ttctgctttt
     5101 tcaccacgtt cgccaattgt ttctttaaag cgagcagtaa cttcttcagg aacaaagaat
     5161 ttctcttcgt agttccaacc ataagctttt ttcgcttcta aaataccttc atcgcctagt
     5221 ggagcaccgt gaactttact tgtaccggca tttggagcac caaaaccgat aacagttttc
     5281 acttcaatca tagtaggttg agaagtgttt tgtttcgctt tttcgattgc tgctaaaatt
     5341 tcagctgtat cattaccgtc ttttactaat aaatgttccc agccataagc ttcaaagcgt
     5401 tgttttacat tttcagagaa agatttgtct aaatcaccat caagagagat atcattggaa
     5461 tcatagagaa caactaatct tcctaattgt tgatgacctg cataagaagc cgcttctgaa
     5521 gcaacacctt ccattaagtc accatctccg catagtgcat aagtataatg atccactacc
     5581 gggaaaccat ctttattata tttcgcttct aaatgtcttt ctgccatagc cataccaaca
     5641 gccatcgcaa taccttgacc aagtggacca gtagttgcgt ctacaccatc tgtataacga
     5701 tattctgggt gaccaggagt tttactttcc cattgacgga aatttttaag atcttctaat
     5761 tctaatttga atccacttaa gtgtaataaa ctatataaaa gcattgagcc gtgtccagca
     5821 gaaagtacaa aacgatctcg gttaaaccaa tgtgaattct tagggttagt atttaataca
     5881 cgcgaccaaa gtgcgtaggc cattggtgct gctcccattg gtaatcctgg atgaccagaa
     5941 tttgcttttt gaattgcgtc cattgataat gtacgaattg tattcactgc taaactatct
     6001 gtgttatcga acaaatgaaa catcctctct tcaatataat tttaactact tttaataata
     6061 agcctaaaaa gcaattaaca caactaataa ttgctttaaa ttgcttaatt gattggtatt
     6121 tttgttcatt tgctcattaa tgtttatttg gtactaatta ttagtgctta ttttttctaa
     6181 gttgtttcac tttatgcggc gttacatctt ttccatttgg gtcgattatc gttgtatttt
     6241 ctattgtccc cttcatatgc gtacgaaaag acttgatgta ttcttttctt aaattatctt
     6301 gctccacttt ttctgtagca gttaatgttc cggctttttt ctttttagaa agctcattaa
     6361 tacgatctat tttagctttt tctagcatcg ttattctcct tttcttctat agaataaaaa
     6421 taagaaagca gcatgatcgc tactttctaa tattatatca taaacggcca ctaaatcgac
     6481 cttactggtt tgctagttga atcgtactat cactctttat taattttgtt ttgtgtacag
     6541 gaataactac tgaatctcct gcttccacat gaccgtcagc taaattattt tctttttcta
     6601 cccagctaac aaaatctgct tttgccatat cacttttccc tgcatattga tctgctaatg
     6661 cccataaaga atccccttca cttacgttca cttctgaata gtcgtttccc ccgccaacta
     6721 cagtacacat taaaatgatt cctagtatga tgcaagtaag tacaaatata atagaaacat
     6781 aaaatttatc ccaaattaat ttcatagtca ttaataatcc ctccaaaaag aatgtatgtt
     6841 cgcttttcta tattatagaa cagccgttcg tatatgtcaa taaaaaaacg aacctttgtt
     6901 tgcatattgg tttttctttt gctatacttg aattataaaa taaccattaa atcaatgagg
     6961 tgaaaccatg aaaatatcta aacgccaaca agatatatat gaatttataa aatcagaagt
     7021 aaaagaaaaa ggttatccac cttccgtccg cgaaattggt gaagcagttg gccttgcttc
     7081 cagctctact gttcatggac atcttgctcg ccttgaaggt aaaggcttaa ttagacggga
     7141 cccaacaaag cctcgtgcga ttgaaatatt atctttagaa gacgaagcag agacacccaa
     7201 tgttgtaaat attcctatta tcgggaaagt aactgctgga atgcccatca ctgcaattga
     7261 gaacattgat gaatatttcc cactaccaga atacatggca gctggcgaaa ccaatgtctt
     7321 catgttagaa atcgacggcg aaagtatgat taatgccgga atccttgatg gtgacaaagt
     7381 aatcgttaga caacaaagtt ctgcaatcaa tggcgaaatc gttgtagcga tgacagatga
     7441 aaatgaagct acatgtaaac gattctacaa agaagctaat cattttagat tacaacccga
     7501 aaacgatgct ttggaaccta tccttttaaa caacgtaacg attctaggaa aagtaatcgg
     7561 actttatcga gatattcgct aattttattc gtttgaacag gtggttgaga acatgattta
     7621 ttttgaaact gaacggctta ttgcaagaga ttatttagca agcgattatc ttccttttag
     7681 tcaaatgaat gcagatgagc aagtaatgaa atacttccca gccagattaa ctcaaaacga
     7741 aagtaatgca tttcttgata ggattcaaga agaattaaag tcacttggat atggtctctt
     7801 tgctattgaa gttaaatcga ctggcgaatt catcggtttt actggatttc atgaggctac
     7861 ttttgaagct acattcactc catgcacgga gataggttgg cgattaaaac atagcgcttg
     7921 gaaccaaggc tatgccaccg aagccgcact tggcgcgtta gcatttgctg aagaaatcaa
     7981 cactattaac gaaatataca gttttaccgc cgcactcaat aaaccttcag aaaatgtcat
     8041 gaaaaaaatc catttaacaa aaatagctac ttttgaacat cccgctttag taaatggcga
     8101 tccactaaag ccccatgttc tttataagaa ggcataataa aaccccctgt acattctggt
     8161 acagggggtt ttaattccaa ataagcagtg aaaaatatag tccgacgagc gttatgaata
     8221 aaactggaat agtaatcaca atgccaattt tgaaataaga gccccagctt atctttatcc
     8281 ctttctgcgc tagaacatgt agccaaagta aagttgctag cgagccaatt ggtgttattt
     8341 tcggacctaa atcagaacca atgacatttg catagactaa cgcttctttc atcacgcctg
     8401 taaatgacgt atgatcgatt gcaagtgcat ttatcattac tgttggcaaa ttattcatga
     8461 cagaagacag tattgcagca ataaatccca ttccaactgt tcccgcaaat aaaccaaagt
     8521 gcgcaacata tgtaattgct tctgataata attttgtgat accgacattt tgcaaaccat
     8581 atacaactac atacatacca accgagaaaa acacaatatt ccaaggtgct ccttttaaaa
     8641 tagcttttgt cgagaccgca tgactttttg cactgactaa caaaaagata acagcaacta
     8701 gcaaggcaat aaatgacact ggaatatcta aaaaactact caaaaaatag cctgctacaa
     8761 ggatgataag tattccccaa gaaacacgaa acatcttttt atctttaatt gcagaagctg
     8821 gctctcgaat cactcgcata tcatattttt taggtaatgc tttccgaaaa taaaaatata
     8881 agattaaaat actcgcaact aaagagaaaa gcgttggaat ccacataata agcgcatact
     8941 gcgaaaaact aataccgaaa aaatcagccg aaactatatt gactaaatta ctaactacga
     9001 gcggcaagga cgtcgtatct gctataaaac cgctagcaat aataaatgga aatacctttt
     9061 tctcatcaaa attcagcgct cgcaccatcg ctagaacaat tggtgtcaaa attagcgccg
     9121 ccccgtcatt agcaaacaac gcagcaacga aagctcccaa aatagaaata agaataaaca
     9181 ttaataaccc attacctctt gctaatcgcg ccatatgtaa agccgcccac tcaaaaaagc
     9241 caattttatc taaaatcaat gaaataatta taatagcaat aaaagcgagc gtcgcattcc
     9301 aaacaattcc agtaactgtt gcgacatctg ataaagtgac gacgccaagt aatatggcaa
     9361 ttagcgcacc tccgcaagct gaccatccga ttgataattt tcttggttgc caaatcacaa
     9421 aaaataatgt gaaggcaaat actaaaatag ctaaagtaat ctgcatttct tcccctttct
     9481 ctaatgaaaa cctccctttc actagcacat ttttaaatat atgcctctat ttgccaaaca
     9541 tcaaacattt gaaaccgatt ttccaataaa aaagcacgtt tccatctata ggaaacgtgc
     9601 ttttgactat taataaattt caagatattg ttcgcgttcc caagggtgaa ctgctgtgcg
     9661 gaacatatca cactcaattg tttttgcttc aataaagtgt tcgaaaatgt gctcacctaa
     9721 accagctttg ataatatcgt ctttttcaag ttcgattaag gcgtggccca agctttctgg
     9781 tagatcataa atgccagttg cttcacgttc ttcttcgttc atgccgtaaa tgttacgatc
     9841 aactggtgcc ggaggagtta attcatcttt aattccagat aaaccagctt taagtagtac
     9901 cgccattgct aaatatggat tagcagatgg atcgacgcta cgtaattcaa gacgagtgct
     9961 tagtccacga gaacttggaa cacgaacaag cgggctacgg tttttacctg accacgcaat
    10021 gtaacatggt gcttcatatc ctggaaccaa tcgtttgaat gagttaatgg ttggatttgt
    10081 aacagctgta tagccacggg catgttttaa catccctgct aagaaatgat aagctgtttg
    10141 gctcaattct agttctccgc tttcatcgaa gaaagcattt cctttttcat taaatagtga
    10201 catattgaaa tgcattccag aaccatttac accaaagagc ggcttcggca tgaatgttgc
    10261 gtgtaaacca tgtttacgag caattgtttt tacgactaat ttaaatgttt ggatgctatc
    10321 acacgctgta acggcgtctt catatttaaa gtcaatttcg tgttgtcctg gtgccacttc
    10381 atggtgagac gcttcgattt caaagcccat ttcttctaat tcaagcacaa tatcgcgacg
    10441 acagttttca cctaagtcgg ttggtgctaa atcgaagtaa ccaccactat catttagttc
    10501 aagtgtcgga cgacgatttt catctaattt gaataggaaa aattctggct caggtcctaa
    10561 gttgaactct gtgaaaccta gttcttccat ttctttaagt acacgtttta agttagcacg
    10621 tgggtctcca gcaaaaggag tcatgtcagg attataaata tcacaaatca ttcttgcaac
    10681 ttttcctttt tcagctgtcc aagggaacac aacccaagtg tctaagtctg ggaataaata
    10741 catatcagac tcttcaattc gtacaaagcc ttcaatggag gaaccatcaa acatgatttt
    10801 gttatctagt gctttcttta gttggctaac aggaatttcc acattcttaa ttatcccgag
    10861 aatatccgtg aactgtaaac gaataaattt tacattttgt tcatctgcga agcggaaaat
    10921 gtcttctttt gtatattttg ccataatcta aattcctcct aaataatcta attatattaa
    10981 cttctaaata aagtaaatac ctcttcttgt ctttttaaaa ccttggtaat tgttgtttcc
    11041 ctgtcgcatc ttgctttaca aagcgaccag cttgttgcat ttcttttcta agtattttgc
    11101 gcacatcatc gtctgtcaaa ggttctttag attctttttg ctgcatttga tacattttct
    11161 taattcccgc aatattcaga ccatcattca aataatcttt tatctctagc aaaacatcaa
    11221 tgtcttgaag tgaatacaaa cggtgatttc cttgatttcg tgccggatgg attaatcctt
    11281 ggtcttcata gtagcgaatt tgtctagcgg tgagatcagt tagcttcatc acaggcccaa
    11341 ttggaaacag cggcatcgat ctccggattt ccttttcact cacgacaatt ccccctcaaa
    11401 acataattat tttttgatga tagtagcatt ataatgtacg tcagatgttt tgtcaaattt
    11461 atgtaagata ttctaacatt atcgttaaag cgttgtatac caatgtattc cgcataaaaa
    11521 aaccgcgatt aaaaccatcg cggtaaaaat taaaaatatt tttttgcaaa taaatgttac
    11581 ttttttatac tattttttgg attgctcgag taactgcaat tttgatgtgt tcataggtca
    11641 aaccgccttg aacatagagt tgataaggtt ctctaatagg tccatctgct gttagttcca
    11701 aactcgcgcc ttgtataaat gtcccagctg ccattatcac gtcatcttca taacctggca
    11761 tatatgcacc gattggcaaa acatgcgcat taaccggcga ggctgcttga atagcttgcg
    11821 caaatgcaac catcttctct ttgttatgga aggaaacgct ttgaattaaa tcagttcttg
    11881 gcgcatccca aactgggtca gcttctacac caaactccgc aagcatggcg gctgtgaatc
    11941 gtgctccttt aattgcctga gctgtcacat gaggagctaa aaagaaacct tgatacattt
    12001 ctaataaact atagagtgat gcacctgctt ctctgccaat tccaggtgta gttaagcgat
    12061 aaccacataa atctactaat gcttcttttc ctgcaatata accgcctgtt ttcgctaagc
    12121 caccaccagg atttttgatt aatgaacccg cgataatatc tgctccaact tctggcggct
    12181 cctgatattc cacgaattct ccgtaacagt tatctacaaa aacaattact tccggattga
    12241 tattttttac aaatacaatc atttctttaa tcttttctat tgtaaaagaa ggtctatccg
    12301 cataacctcg tgaacgctga attccaatca tctttgtttt tggcgtcatt tttttcgcta
    12361 ttcttggaaa gtctacatca ccattttcca gaagcggcac agagctataa ccaatatgaa
    12421 aatcttttaa agagccctgt ccttgctttc gtattcctac aatttcttct aacgtatcat
    12481 agggttgacc agtaatataa agtaattcat catccgggcg aaggatgcca aataatacgg
    12541 ttgaaattgc atgggttcct gaaattattt gtggacgaac cagggccgcc tctgtcttaa
    12601 atacagtcgc atacacacgt tctaatgtat ctctaccttc atcatcataa ccatacccag
    12661 tggaaggatg aaaatgaaaa tcactcactt tattctcttg aaacgcatct aaaactttcg
    12721 cttgattaaa ttcagcaatt tcgtctgttt tattttgcaa atcatcaatt tgtgtttcca
    12781 ccttttttcg tatcgcttga atattattca ttatttagct cctttctcgg tttgtacccc
    12841 tctatgtggt aactctgttt actttcaata tattctagtt tcgttaccca cgcttgttgc
    12901 tttatttgcg ctaattcttt tcctttttct tctgaaagtt ctagtgtaaa gaaagcccaa
    12961 tttttttcaa ttaattggat cattcgctgt ttaatcgtat ctggagcctc ttgatctaaa
    13021 gctgatataa gcaaattttc tggttgatcg ggtacaaacg tggctggtgc atgatccatt
    13081 ttattgtaaa tgactagtgt cggcagatgg ttcatttcaa gttcctctaa taaagaaatt
    13141 accgttgttt cgtgttgcaa atagtctgga tttgatgcat caactacatg aattaacaca
    13201 tctacattgg cagtttcctc taaagtagag cgaaaagctg caattaaagt cgttggcaaa
    13261 tcttgaataa aaccaactgt atctgtcaaa agcgcttgaa atccacccga aaagcgaatt
    13321 tttcgtgtgg ttgggtcaag tgttgcaaat aatttatctt cttgtaatgt tgtttcattc
    13381 gttagacggt tgaaaatagt tgatttccct gcatttgtgt aaccaattaa accaaaccga
    13441 aaaacggatt gtatatttct tcgttcaatg attcgcttgc ggtgttgttc aacatgtgtt
    13501 aattgcgctt tgatatcatg cattttttcg cgaatatggc gtttgtccat ttctagtttg
    13561 gattcaccag gccctcttga accaatacct cctccaagtt ttgataagga aacaccttgt
    13621 ccgctaagtc ttggtaacag atatttatat tgcgcgtatg cgacttgcag ttttccttct
    13681 ttggattttg cgcgcatggc aaatatgtct aagattaact gtgttcggtc aattattcgc
    13741 gcatcaaccg ccttagaaat attgcgcact tgagttgcac taagttcact attaaatata
    13801 acaacgtccg cctcatgcat ttccactaaa gtagcaagct cttccagttt accggaacca
    13861 atgaacgatg cttgatttac tcgttctaat ttttgaatta attcatctac tacttcaccg
    13921 tttgccgttt tagctaagct atgtagttca ttcatggaat tccagaaagc ttcttctgtt
    13981 ttatttggca aaatcacgcc tacaagtatt attttttctc tttccacatg catttctccc
    14041 tttttcagac aagactaatc gtagcatatt ttctgcataa aaaaaagaca tgaaacatcg
    14101 caaaaaaagc gagttccctg cctttcaagt aaagtactta ttccgcatca ggatttaaag
    14161 cgacattctt ctgcggggag aaagttgaaa ttgcgtgttt aaatacaagc tgttgttttc
    14221 cttcgacatc tagtagtacg gtaaaattgt caaaacttac aacacgtcct cttaactgaa
    14281 aaccatttgt taaaaataca gttgcaagaa ttttttcctt acgcaattga tttaagtaat
    14341 agtcctgtaa cccttgtcca ccttgtttca taatttccct ctccaatctc tatcttatac
    14401 taaaaatttc ccaaacccca atgaagttcc attgtgcaat tggttggcta atttcaaata
    14461 ccctttattt cttcttacca aacagaaaag cgttatttag ctgttaaaaa ggttgttgct
    14521 ttatttaatg cttctgattc tgtactgcta acacccgcct gaatccagtc aatatccatt
    14581 ctatttctaa accaggttaa ctgtcttttc gcgaaatgcc ttgagttctt ttgaattaat
    14641 tcttttgctt cttctagtga gctctttcct tcaaaataag gaaataattc tttgtagccg
    14701 atgccgcgaa ctgctggaac atccactaaa tgttgctcat ataatttttt tgcttctgtc
    14761 actaaacctt cttcaaacat taaattcact cgctgattaa ttctttcgta aagtaacgct
    14821 ctgtccaaat caagtcctag aaagagtggt tggtatctat cattaagtac attattcact
    14881 tgatactctg agaaaggctt tcctgttaga tgcatcactt ctaatgctct aatcactcgg
    14941 cgcttattgt tttcgtgtat ctgtgctgcg ctttctggat ctttttgttc gagcatttgc
    15001 cacaatacag ttttgtctag ttgttctaat tccgctcgat aagccttatc ttcgcttacg
    15061 ttaccaaaat cataatcata gaaaacagat tgaatataaa gtcctgttcc accaacaata
    15121 attggtagcc taccagcttg atgtattgtt tctatacatt ttcttgtttc tatttggaat
    15181 ttcgctgcag tgaatggttc ggaaggattc gtcacatcaa taagataatg tttgattcca
    15241 tccatttctt ctggtgtgat ttttgctgta ccgatatcta atccacgata aacttgcata
    15301 gagtcaccac tgatgatttc tccgtccaat tttttcgcta gttcaatact taaacttgtc
    15361 tttccgacag cggttgggcc aacgatgacg atgacaggaa tcttgctcaa aaaaaaacct
    15421 ccttttcacc tgtaatcaat gtaccatgaa aaaggtttct tgaaaatagt gaaaatgatt
    15481 ttttccagaa aaaaagcgca aatccttgaa agatttacgc tcttttcgaa ttttaattat
    15541 ctatcgtgcc aatcagctgg ttctctagca tcattaattt gaatatttaa ttcctcgata
    15601 taggtttgtt ttacatcgtc gctccagtgg aattgtttag ccatttcatc cacaacagcg
    15661 tctttccatt caagtaagta tggcatatcg aaaagcaagt agccagtgcg acgtaataag
    15721 aaatcgattg gcgttgtcac tgcttcgtgt tgaatcgagt agcgtagttc agcatacaaa
    15781 ctgtttggta aagtggtttc gttttgttct ttatgttcct gtgcataagt aaataattga
    15841 tcgatattac taccgaaacg tttagccatc tcacgacctt cttctaaagt ccagccgaaa
    15901 cgattattac cttctttcgc ttttttagat aggaaagctt ctaattgttc tgagccacca
    15961 atgtcaccac cagaaattgg taaatgtttt gtttgaactg ttttgtactt tttaccagtt
    16021 tctttcgcta atgtttttga aacgtcatct aataattttt cggccatttt tctgtaacca
    16081 gtgagtttac cacctgccat cgtgattaag ccactttcag aaaaccaaac ttcatcttta
    16141 cgtgaaattt cagatggatc ttttccttct tcatagataa gtggacgaac cccagcccaa
    16201 cttgattcaa tatctttttc ggtaatatgc acatcaggga acatataatt aatcgcctta
    16261 atcacataat tatgatcaga ttcaagtgct tttggattaa ttactgcttc gtcgtacact
    16321 gtatccgtcg ttccaacata cactttttta tcgcgcggaa tagcaaagac catccggcca
    16381 tcaggtgtat caaagtatac cgcttgttcc atcgggaatt tttgtttatc aataaccaaa
    16441 tgaattcctt ttgttaagcg taaatgtttg ttgtttgttg cataatctaa ttttcttact
    16501 ttatctaccc aaggaccagc agcattaata acacgatgtc ctttaatatc gtatgctttg
    16561 cccgacaaac gatctgttac ggttacacca actacttgtt tattgtcatc atataagaaa
    16621 tgctccgctt ttgtatagtt aatagcattc gctccgagtt ctactgcttt tttcataact
    16681 tctattgtta aacgcgcatc atccgtgcgg tattccacgt agtaaccaga accttttaaa
    16741 ccgtcttttt tcacgaatgg atttttggct aatgtttctt ttgcgcttaa aattttacgt
    16801 cgttcatttt tctttacccc tgctaaatag tcatataaac gaataccaaa tgaagcggta
    16861 gttttaccca tattgccgcc tttatggaat gggagcatca tccattcagg agtcgttacg
    16921 tgtggtccat tttcgtagac tatcgcacgt tcttttccta aatctgctac ttctttaatt
    16981 tcaaattgtt gtaaatatct taatccaccg tggactaatt ttgttgaacg gctcgatgtt
    17041 ccgctcgcga aatcacccat ttcaacaagt gcgacactca tacctcgtga agtggcatct
    17101 aaagcgattc ctgcccctgt aatcccgcca ccgacgatga ctaaatcaaa tttttcctct
    17161 tgaagatttc tttcgattgt ttctctgtca aacgctgaaa ataattgtac cattttgttt
    17221 gcccccttca aattgtttac cgtctgaatt atgccttctt ggttactttt ccacttttca
    17281 atctaactga aacgctttaa gtttaaaaac aaaaaaagag actgcaaagt aagacgattg
    17341 cgctcgcctt ttgcagtctc tccgaatctc agacaataat atttattaac ttactatgat
    17401 tatatctttt aacgatttat aatgaaagcg ttttgctcat ggaggttatt tattatttct
    17461 tagtgccact gccttttcag gaaaatcagt catcattcct ttaacattgg catctataaa
    17521 atgcgtgata gtttcctcct tattcaccgt ccaatagcgt gctgcgattt gctttaaaat
    17581 cgggtttttc attgctttta ctggtggatg cactgcatca agctgaattt tttcatgtaa
    17641 tggcaatact tcatctaagt tttcatgtgt aattaaagct agtctggcag taggatctaa
    17701 atctctcagc cgaatgagag tatctgggtt aaaggaagaa tacattcgtt tgacttcggg
    17761 aaatttatcc gctaatgcta aaactttttg ttcgattcct tcatattcaa agacatccgt
    17821 tttcaactca atgtttagta tcatatctgt gccactcacc aacttaaaaa tttcttccaa
    17881 agttggcaca cggattttac ggaaaagccg tttaccaatc actaattttt tcacttctga
    17941 aagtgtgtaa tcttttaaaa agccagaccc atttgtagtc ctatcgacgc gttcatcgtg
    18001 catgacgatt aattcgccac ttttcaaaac atgaatgtct aactcgatac catccgcacc
    18061 ggataaaatc gctgctttca tagctggtag tgtattttct ggatgcgtcc cactactgcc
    18121 tcgatgggca aaaatttccg tcaaaatgct tccccccaaa ctatttactt
//
LOCUS       DASEAA010000038        17979 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.038, whole genome shotgun sequence.
ACCESSION   DASEAA010000038 DASEAA010000000
VERSION     DASEAA010000038.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17979
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.038"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..859
                     /locus_tag="U0342_001136"
     CDS             <1..859
                     /locus_tag="U0342_001136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AEC family transporter"
                     /protein_id="HEM2422488.1"
                     /translation="IGQKTLKFDIPNLSKLTLYLMSPFLAFNTFYTNALTIDYAYLAI
                     YIFALCLSLILLVSLISFLLGYNLQDRCALILASAFMNNGNYGTPVVLLVFGAVGLDI
                     AVVLMVLQQLAMSTIGIYFAAKGSKDANGMKTVMKRVVRMPIAYGALLGLTLQLLHVS
                     LPSALMTCVKLVGDAAIPTIMIVLGMQLAVISFRRIELTKVGIALVLKLLIAPIIAFG
                     LTLILPVDEMTKQIMILLAAMPTAANTTLMAVQFDTKPDLVSSATFISTVLSIITLPI
                     VLYFLHPVF"
     gene            974..2935
                     /locus_tag="U0342_001137"
     CDS             974..2935
                     /locus_tag="U0342_001137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-1,6-bisphosphatase"
                     /protein_id="HEM2422489.1"
                     /translation="MKTIDMKYLRLLAKEYPTIAKTATEIINLEAIMNLPKGTEHFLS
                     DVHGEYSAFEQVLRNGSGVVKRKIRDIFGAELDDAEINSLSTLIYYPEEKMDLLASET
                     EDLQAWYRTTLFRLIELCQYVASKYTRSKVRKAMPEDFAYILEELLHENYNEDDKKLY
                     YEEILQHIISLGRAEEFISALSLLIQQLVVDHLHIVGDVYDRGPYPDKIMDTLMNYHS
                     LDFQWGNHDILWMGAASGSRVCAANVIRISARYLNLDILEDSYGISLRPLALFADEVY
                     KDDPCTYFQPKNEENINYSNAEITQIARMHKAISIIQFKLEGEIINRRKEFDMDHRLL
                     LQFIDYKKGTIHLKGKEYLLLDSHFPTINPEKPYELTDAERELIGKITAAFKNCRRLQ
                     KHVQFLYSKGSMFLTYNGNLLYHGCIPLHEDGTFMEMKLRGEKYAGRSLLEQFEILTR
                     EAYVRPTGTKEKKYACDIVWYLWTGAISSLFGKSEMTTFERYFVAEKETHTEEKNPYY
                     KLRNNELICKQILEEFGLDGECGHIINGHTPVKEGKGESPIKANGKMLVIDGGFAKAY
                     HKETNLAGYTLLFNSYGLQLVSHQPFTTKEDAIKNETDILSTRQVIEMEINRKRVRDT
                     DIGAKLSEQAEDLKLLLDAYRNGLLHENR"
     gene            complement(3185..6832)
                     /gene="nifJ"
                     /locus_tag="U0342_001138"
     CDS             complement(3185..6832)
                     /gene="nifJ"
                     /locus_tag="U0342_001138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate:ferredoxin (flavodoxin) oxidoreductase"
                     /protein_id="HEM2422490.1"
                     /translation="MRNRKTMDGNTAAAYISYAFTEVAAIYPITPSSTMAELVDEWSS
                     KNKKNLFNEPVKVVEMQSEAGAAGTVHGSLQAGALTSTYTASQGLLLMIPNMYKIAGE
                     LLPTVFHVSARTISAASLNIFGDHSDVMAARQTGFAMLAEGSVQEVMDLSAVAHLASL
                     KGSLPFLNFFDGFRTSHELQKVEVLEYDELENLLDKEALQQFRNRAMTPNNPKTLGSN
                     QNPDIFFQQRETVNRYYEEIPNMVQNYMKEINQLRGTDYDLVNYYGAEDATDVIVAMG
                     SVTPVIEQVIDYLTTEGKKVGLLNIRLYRPFPAENFLAKLPKTVERVAVLDRTKEPGS
                     GGEPLLLDVQSVLYDSETRPLVIGGRYGLGSKDVTPDQILGVYSHLTTEKPKPRFTIG
                     ITDDITNLSIENAGPSDLTSEKTFQCKFWGFGSDGTVGANKAAIKIIGDNTDLYAQGY
                     FSYDSKKSGGLTVSHLRFGEKRIRSAYLIQQADFVSCSTSAYLRSYDLLKGLKPGGTF
                     LLNTIWEGEQLERHLPAAMREYIAKNNIQFYTLNAMRIAGEAGLGRRINTVMQTAFFR
                     VTDILPFEKALADLKESAIATYGKKDMAVAEKNILAMDQTVANLHKVEVPASWANPVV
                     TAETNATTEKPAYVQNILEPVNRLEGDNLTVGDLISNGMVSGAYPPGTAAYEKRGIAL
                     EVPEWISENCTMCNECAFVCPHAAIRPILTDEEEMESAPEGFMTREMRGKDGLRYRIQ
                     VSPMDCTGCNLCAETCPAKDKALVMKPFEEVTAKENPNWSFAINVKPKKNPGKKNTVP
                     GSQFEQPLLEFSGACAGCGETPYVKLLTQMFGDRMMIANATGCSSIWGASAPATPYTV
                     NDKGHGPAWGNSLLEDNAEYGYGMYLANQTMRKALNNKVTKALREEAMSETLREALID
                     WQTQMDVSEDTRERAEALQLALLSEMEGNEALESIYNDRELFIKRSQWMLGGDGWAYD
                     IGFGGIDHVLASGEDVNIFVMDNEVYSNTGGQSSKATPTAAIAKFASGGKSVGKKDLG
                     IMAMSYGNIYVAQIAMGANKRQTLKAIEEAEAYPGPSLIIAYTPCINHGISSGMKTML
                     SETQKAVECGYWSLYRYNPALEEKGKNPMTMDYKKVDFDQFEDFLKRETRYSALYKAN
                     PDVATKLSEKTRLDAEKRFKRYATMAGLDLEKIWKKKEATEDVKAPVDDERAARKAAR
                     EARRLAREQGK"
     gene            complement(6986..8620)
                     /locus_tag="U0342_001139"
     CDS             complement(6986..8620)
                     /locus_tag="U0342_001139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na/Pi cotransporter family protein"
                     /protein_id="HEM2422491.1"
                     /translation="MGDINIQQMIFQFIGGLGIFLFGIKYMGDGLQMAAGDRLRDILD
                     KYTTNPFMGVLAGILVTVLIQSSSGTTVLTVGLVSAGFMTLKQAIGVIMGANIGTTVT
                     AFIIGIKLSEYALPIIAAGAVLLFFFKNHKVKNIGQVFFGFGALFYGLDLMGQGMKPL
                     AGMESFHELTAQMSTNPFLGLLIGTIFTAVVQSSSATIGILQELYGQGAIDLQAALPV
                     LFGDNIGTTITAVLAAIGASVAAKRAAATHVIFNLIGAIIFMLILPLFTSLVTYLQGL
                     FGLNPEMTIAVAHGTFNITNTFIQFWFIGAFAWLVTKLIPGDDSRIDYKTKHLDTNLI
                     DQSPGIALEMAREETLRMADYAKFGLQEARQYLVNRESKHAESTIQVEEAVNNLDRKI
                     TEYLTKISSVALTNNETEEHALMLDTVRDIERVGDHMENIVENIDQLIKNKAKMSEEA
                     SDQLIEMFELTTANFERAVKSMHKKDRALAEETILVEKDIDKAERRLRKNHIRRLNEG
                     KCQVVSGILYIDIVSDLERIGDHANNIAESVLELNE"
     gene            complement(8819..10099)
                     /locus_tag="U0342_001140"
     CDS             complement(8819..10099)
                     /locus_tag="U0342_001140"
                     /EC_number="1.1.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA reductase,
                     degradative"
                     /protein_id="HEM2422492.1"
                     /translation="MNAFDKFYKKTVEERRAILAEYADLNEEEQAFLASTGALSFDKA
                     NHMIENTIGIYSLPLGLGMNMLLNDKHYVVPMVMEEPSVVAAQSAGAKLIGQNGGITG
                     SATKRKMIGQIELISVSDIQAAKENIIANEEQLIAIANQAHPSLQKRGGGAVEIQVRT
                     AQTANDETLLIVHLLVDTQEAMGANMVNTMVETLAPELEMLTNGTANMRILSNLVDEA
                     TATAVCRINPESLATKTQSGEWVRDRIIAAYEFADADIYRAATHNKGIMNGIDAVIMA
                     FGNDWRAVEAASHAYAARTGSYKPMSKWSKDAEGYLVGELTLPMPVAFVGGSIGIHPI
                     ATLSKKIARVESAKELAMLVCAVGLTQNLAALKALVTEGIQRGHMSLQAKSLAMTAGA
                     EADEIEKVATFLQESKQLNVVAAKEFINKLRSGK"
     gene            complement(10140..11108)
                     /locus_tag="U0342_001141"
     CDS             complement(10140..11108)
                     /locus_tag="U0342_001141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464351.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AlkZ family DNA glycosylase"
                     /protein_id="HEM2422493.1"
                     /translation="MDAKTIIENRFQSQKLIQTAWSDSPERIVFHFGAMQSQNYGQSL
                     WAVGSRMTTPSEKAVEQAINNGEIIRTWLLRGTIHLFSAKDYHWMMDLIAPSIDKICK
                     PYRAKLGLTDEVLHKATEVVSEIVSEQAVTRKDLAAHLATKDLPSAGIPFAQLLVYLS
                     SRKVICSGPNETFRNTMHIPADTNHFTREEAIKELAKRYIQSHAPATLKDFCFWSGLT
                     VTDAKIGIADMPKMGDYYITTLVENGTMPTTIPLAGFDEWIIGYRDRSVVLPEIWHDE
                     IMTKNGIFRPAIITEGKVVGKWEKPKKRAELDGDFWDRYIQFRNML"
     gene            complement(11187..12011)
                     /locus_tag="U0342_001142"
     CDS             complement(11187..12011)
                     /locus_tag="U0342_001142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2422494.1"
                     /translation="MNLKDTVKLANGVEMPRLGFGVWKVQDGDEAVNSVKWAIEAGYI
                     SIDTAAAYKNEEGVGQAIKESGVKREDLFVTTKLWNAEQGYESTLAAFDESLRKLELD
                     YVDLYLIHWPVKGKFKDTWRAFEKLYKDKRVRAIGVCNFHEHHLKELMEDAEIAPMVN
                     QIELHPQLTQEPLRKFCAENNIVVEAWSPLGNGKLLSNPEIKAIADAHGKSVAQVILR
                     WDLQIGVVTIPKSVHQERIIQNADIFDFELSEEEVAKISGLNKDERTGPDPDNFNF"
     gene            12132..12521
                     /locus_tag="U0342_001143"
     CDS             12132..12521
                     /locus_tag="U0342_001143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2422495.1"
                     /translation="MQQTIKEASEHTGLSAHTIRYYEREGLIPFLARDKNNNRIFDND
                     ALHWLELLTCLRVTGMPLAKQKEIVELTKGGDGTVSERIAVLKEHQQDMYRRQAELDR
                     AFKKIEKKLACYEELEQAVNKSVDQFS"
     gene            complement(12537..13199)
                     /locus_tag="U0342_001144"
     CDS             complement(12537..13199)
                     /locus_tag="U0342_001144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3153 domain-containing protein"
                     /protein_id="HEM2422496.1"
                     /translation="MKKIIFAVVLSLVLILAGCADVTNTVKVDKKGEATISFDIDISS
                     VAGIFASSYSDEVEAKLKEAGFTVDKKSNTSYHIEKKLDKNETTKSDMKPEDFGVKIT
                     NSKSFFTQKIKVDADIDIEKIWKKEVADVPFPKEILSQVDYTFILDLPISSIGENNAK
                     SVDGGKLTWDVPLDKKSEMYFEVTVPNVKNIAIVGGILLVAIIGLLIYLIKRHRKKKK
                     QL"
     gene            complement(13216..13773)
                     /locus_tag="U0342_001145"
     CDS             complement(13216..13773)
                     /locus_tag="U0342_001145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422497.1"
                     /translation="MIRHAKKSDAPKIAPLLLVIWKDMELPILEVETEEAITNALIEA
                     IQTEDYRYSYRHLHVYEKDGDIAGVLAGYPGKIEPEIDRAWNEIAKKHGIRYEEPIFA
                     DKETFPGEWYLDSIVTNEKYRGHGVGTALLAKLTEIAAEDGEKVVGLNCDKGNPHAKR
                     LYERLGFHVTGEIILSGHEYEHMQK"
     gene            complement(13883..14731)
                     /locus_tag="U0342_001146"
     CDS             complement(13883..14731)
                     /locus_tag="U0342_001146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422498.1"
                     /translation="MNETEKLVAALLERNFGKNIGTRYPDNEAAQMRAEEVIGEIAIV
                     IAPLVEKLGIESKTVKKTIPFLYELQKNQFCDMSAYPYPLLLVNGTSADTEKYWRDLP
                     TYWTDDANKIVLPYVLEHIKNNKVRQKLLAFHAWLIGEVVEMNEELGADFRIKLVFES
                     DMRIRLRVYDVEQIAIEVHFLDNHDTEQQHLGYDVSLDVDITDKARLLLRQGILTENL
                     GLEALKAYMKSVLPIAHSLKNLEYLTVEDTKKLTKLLTQEEPKIMEDTDLTSKALDFL
                     QKAAQQ"
     gene            complement(14746..17376)
                     /locus_tag="U0342_001147"
     CDS             complement(14746..17376)
                     /locus_tag="U0342_001147"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation-translocating P-type ATPase"
                     /protein_id="HEM2422499.1"
                     /translation="MLWVKESIEQLLSKLHTNLDTGLTKEQVKQKHAEFGTNEFEEGK
                     KESLLQKIGHHLVEITTIVLLFAAAISAYLAITTGYGWAKVVVILGIVVLNMVLGIYQ
                     ENSAEKALAALQSMNAHLTTVVRDGVRMQVDATELVPGDIIEIVAGDMIPADARIISS
                     SSLQVEESALTGESVPVEKDANAVVSEKAPIGDRLNMLYSGCLVTNGRATAVVVEIGM
                     ETEMGKIAGLLNSTSKLMTPLQLRLKELAKRLSIVALLAGILIFIIDVYVYGETIIET
                     LMIAISLAVAAVPETLPVIVTLTLAYGVQNMVRKNTIIRRIPAVETIGNTSVICSDKT
                     GTLTQNKMIIQQIWAADHAPIKATAEFDTAEQKVLEMLSLSSNATIDVTDGEETIIGD
                     PTESSIIRLLEEKGTTKKALEAKYPRVFELPFDSDRKLMTTIHQVEDGFLSITKGAFD
                     RIPVNFSEAFLAEAERVHDSFAEDALRVLVVAYKKYPEMPTDLSSEALETDLTFAGMV
                     GMIDPPRPESKAAVLAAKKAGIKTVMITGDHIVTASAIAKEIGILTDGDKAITGAELA
                     EMSEADLEKNIRDYAVYARVSPEDKIRIVKAWQKNGEIVTMTGDGVNDAPALKAADVG
                     AAMGITGTDVSKNAADMVITDDNFATIVDAVKEGRTAYENIRKTIYFLLSTNFSQIFI
                     MLIAIILGWGAPVVAVQLLLINVVSDGIPGFFLSREKADDSIMERKPIPKNAGIFANG
                     LGKKMATQAVVFTIVTLAGFYIGQFVTINNSIGASYEVGMTMAFVILAWSSVAHIFNV
                     RSDKSIFTIGFLSNRGLFFSAICSMLIILGLAIIPPLANMFFLVEMSLTHWILAFILS
                     MFPLLFVEIQKLIQRKRAKA"
     gene            17601..>17979
                     /locus_tag="U0342_001148"
     CDS             17601..>17979
                     /locus_tag="U0342_001148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2422500.1"
                     /translation="MSFAVPYLVFNGEGQDALTFYADVFQAEITSVQRFKEMNNFDGN
                     AVFGERLMHSRLAKNGEEFIYITDAPYDGFTIGNRVTILINFETEEDIKYAYEVLSAT
                     GKVEMELQVAFWGSTYAQVTDQFG"
BASE COUNT         4989 a         3806 c         3253 g         5931 t
ORIGIN      
        1 tattggacaa aagactttaa aatttgatat tcctaactta tctaaactca cgctttactt
       61 aatgtcaccg tttcttgcat ttaatacttt ttataccaat gcgctaacga tagattatgc
      121 atatttggcg atttacattt ttgcgctttg tctgagtttg attttgcttg tcagtttaat
      181 tagttttttg cttggttata acttgcaaga tcgttgcgcg ctcattttgg ctagtgcttt
      241 tatgaataat ggaaattatg gaacacctgt tgtcttgctt gtttttgggg ctgttgggct
      301 tgatattgct gttgtattaa tggtgttgca gcaactagct atgagtacca ttgggattta
      361 ttttgccgca aaaggaagta aagatgcaaa tggaatgaaa acggtcatga aacgggttgt
      421 tcggatgccg attgcttacg gggctttact cgggcttacg cttcaattac ttcatgtttc
      481 acttccatcc gctttaatga cttgcgtaaa acttgttggc gacgctgcta ttccaacaat
      541 tatgattgtc cttggaatgc agttggcagt tatttcgttt agacgaatcg aacttacaaa
      601 agtaggcatt gcattagtac tcaaattact cattgctcca atcattgcgt ttggtttaac
      661 gttgattctc cctgttgacg aaatgacaaa acaaattatg attttacttg cagctatgcc
      721 aactgcagcg aatactactt taatggctgt acaatttgat acaaaaccag atttagtttc
      781 tagtgccaca tttattagta cagttttaag tattattacc ttacccattg tgctctattt
      841 tcttcatcca gttttctaag gcgggctcta gctcgtcttt tttgtataga ccaattataa
      901 aacaaaacgt ttgccttgct tacatttaag aaatataata gctataccaa ttgaaaaagg
      961 aggtactgga ctggtgaaaa ctattgatat gaaatattta cgcttgttag caaaagaata
     1021 tcctactatt gccaagacag ctacggaaat cattaatctc gaagcaatta tgaaccttcc
     1081 aaaaggaacg gaacattttt taagtgatgt tcacggtgaa tatagtgctt ttgaacaagt
     1141 gcttcgtaat ggttctggtg ttgtaaaacg gaaaattcgt gatatttttg gcgcggagct
     1201 agatgatgca gagattaatt cacttagtac actgatttat tatccagaag aaaagatgga
     1261 tttgcttgct agtgaaacag aagatttgca ggcttggtat cgcaccacac tttttcgttt
     1321 gattgaactc tgccagtacg ttgcttcaaa atacacacgt tctaaagtga gaaaagccat
     1381 gcccgaagat tttgcctaca tattagaaga gttacttcat gaaaactaca atgaagacga
     1441 caaaaagctt tattatgaag aaattttaca acatattatt tcacttggtc gtgcagaaga
     1501 atttattagt gctctctcgt tacttattca acaattggtc gtcgatcatt tgcacattgt
     1561 tggtgatgtc tatgatcgtg gtccttatcc agataaaatc atggatacat taatgaatta
     1621 ccattcgctc gatttccagt ggggtaatca cgatatttta tggatgggcg cggctagtgg
     1681 ttctagggtt tgtgcggcta atgttattcg gatttctgcc cgttatttaa atttagatat
     1741 tttagaagat agttacggta tttctcttcg ccccctggcc ctttttgccg acgaagtgta
     1801 caaagacgat ccttgtacct acttccagcc caaaaacgaa gaaaatatta actatagtaa
     1861 tgcagaaatc acgcaaattg ctaggatgca taaggctatc tcgattattc agtttaaatt
     1921 ggaaggtgaa attataaatc gacgcaaaga atttgatatg gatcaccgac ttttacttca
     1981 atttatcgat tataaaaaag gcacaattca tctaaaggga aaagaatacc tgttgttaga
     2041 cagtcatttt ccaacgatta atccagaaaa accttatgaa ctcactgacg cggagagaga
     2101 acttattggg aaaattactg ccgcttttaa aaactgtcgt cgattgcaaa aacatgtaca
     2161 atttctatat tcaaaaggca gcatgttttt aacttataat ggtaatttac tctaccatgg
     2221 ctgcattcca ctccacgaag atgggacttt tatggaaatg aaattacgtg gcgaaaaata
     2281 tgctggtcgt tcgcttttag agcagtttga aatacttacc cgcgaagcat acgtacgtcc
     2341 aactggaact aaagaaaaga aatatgcatg tgatatcgtt tggtatttgt ggactggtgc
     2401 catttcttcg ctatttggaa aaagtgaaat gactacattt gaacgttatt ttgttgcaga
     2461 aaaagaaaca cacacagaag aaaaaaatcc ttactacaaa ttgcgtaata acgaattaat
     2521 ttgcaaacaa attttagaag aatttgggct tgatggtgaa tgtgggcata tcattaacgg
     2581 ccatacgcca gtcaaagaag gaaaaggtga aagtccgatt aaagcgaatg gtaaaatgct
     2641 cgtcatcgat ggcgggttcg caaaggccta tcataaagaa acgaacttag cgggttatac
     2701 actacttttt aatagttacg gtttacaatt agtgagtcat cagccattta ctacaaaaga
     2761 ggatgctatc aaaaatgaaa cggatattct ttccacgcgt caagttattg aaatggaaat
     2821 taaccgtaaa cgtgtaaggg ataccgatat tggggctaaa cttagtgagc aggcagaaga
     2881 tttaaaattg ttactagatg cctatcgtaa tggcttgctt catgaaaacc gttaactaat
     2941 aggtttttaa ttgtcataaa actttcacaa gtcccaaaaa gcttgggctg caacaactaa
     3001 cacttatatg aaaacttatc tcttcatttt tctagtgcat cttctgagaa aaaaagttat
     3061 atttaaatag tagttatttc tttataactc tcataagaga atatctattc attcccacat
     3121 cgcttctgat tcccacagat caaaagcaaa aaagtaggcc tagcatcagc taggcctact
     3181 ttttttattt accttgctcc cgcgctaatc ttcttgcttc acgtgctgct ttccttgctg
     3241 ctcgctcatc atcaacgggc gctttcacat cttcagttgc ttcttttttc ttccatattt
     3301 tctctaaatc aagcccagcc atcgtcgcat agcgtttaaa gcgtttttct gcatctaaac
     3361 gggttttttc ggatagtttt gttgcaacat ctggatttgc tttgtaaagc gctgagtatc
     3421 gtgtttcgcg ttttaggaag tcttcgaatt gatcgaaatc gactttttta taatccattg
     3481 tcattggatt ttttcctttt tcttctagtg ccggattata acggtacaag ctccagtagc
     3541 cacattctac tgctttttgc gtttcactta gcatcgtttt cataccgctt gaaataccgt
     3601 gattaataca cggcgtataa gcaataatta gagatggccc cggatatgcc tctgcttctt
     3661 caatagcttt taaggtttga cgtttattcg cccccatcgc aatttgcgcc acatagatat
     3721 ttccgtaact catcgccata ataccaaggt cttttttgcc gacagatttc ccgcctgaag
     3781 caaatttggc aattgctgcg gttggtgtgg ctttcgatga ttgtccacca gtatttgaat
     3841 atacttcatt atccattacg aaaatattta catcttcgcc tgatgctaac acatgatcaa
     3901 ttccgccgaa gccaatatca taagcccagc cgtcgcctcc aagcatccac tgcgatcgtt
     3961 taataaataa ttctcggtca ttatagatgg attcgagtgc ctcattgcct tccatctcac
     4021 taagaagcgc aagttgtaat gcttctgccc gttcgcgtgt atcttctgaa acgtccattt
     4081 gtgtttgcca gtcaataagc gcctcgcgta acgtttctga catggcttct tctctgagtg
     4141 cttttgtcac tttattattt aaagcttttc gcatggtttg gtttgctaaa tacataccat
     4201 aaccatattc tgcgttatct tctaaaaggg aattgcccca cgccggtcca tgtcctttat
     4261 cattgacagt ataaggcgtt gcaggtgcag atgcgcccca aatagaggaa caaccagttg
     4321 cattagcaat catcatccgg tcgccaaaca tttgcgttaa taatttaaca taaggagttt
     4381 caccgcaacc tgcacaagca ccagagaact ccaataacgg ttgttcaaat tggcttccag
     4441 gtacagtatt tttcttccca gggtttttct tcggtttcac attaatcgca aatgaccaat
     4501 tcggattttc tttagctgtg acttcttcaa atggtttcat tacaagcgct ttatctttcg
     4561 ccggacacgt ttccgcacat aagttacaac cagtgcagtc cattggggaa acttggatac
     4621 ggtaacgaag gccatctttg ccgcgcattt ctcttgtcat aaagccttct ggagcagatt
     4681 ccatttcttc ttcatctgtt aaaattggac gaatggcagc atgcggacaa acaaaggcgc
     4741 attcattaca catcgtacag ttttcagaaa tccattcagg aacttcgagt gcaattccgc
     4801 gtttttcgta agctgcagtc cccggaggat aagccccact gaccatacca ttcgaaatta
     4861 aatcaccaac agtcaagttg tcgccttcta agcgattcac tggctcaagg atattttgta
     4921 cgtaagctgg tttttcagtc gttgcatttg tttctgctgt tacaactgga tttgcccagc
     4981 ttgcaggaac ttctacttta tgcaaattag caacagtttg gtccatcgcg agaatatttt
     5041 tctccgcaac cgccatatct tttttcccat aagtagcgat agccgattct tttaaatcag
     5101 caagtgcttt ttcaaacggt aaaatgtcgg tcactcggaa aaaggccgtt tgcataacgg
     5161 tattaattct tctaccaagt cccgcttctc ctgcaattct cattgcattt aatgtataaa
     5221 attgaatatt atttttcgca atatattcgc gcattgcggc tggcaaatgg cgttctaact
     5281 gttcgccttc ccaaatggta ttgagcaaga atgttccgcc tggttttaaa ccttttaata
     5341 aatcatagga acgtaaatag gccgaggtag agcatgagac aaaatccgct tgttggatta
     5401 gataggctga gcgaattcgt ttttcaccaa agcgcaaatg cgaaacagtt agcccgcccg
     5461 attttttcga atcataggaa aagtaacctt gggcgtataa atcggtgtta tcaccaataa
     5521 ttttaattgc ggctttattc gcgccaacag taccatccga gccaaaaccc cagaatttgc
     5581 attggaaagt tttttctgaa gtgagatcac ttggtccagc attttcgata gatagattcg
     5641 taatatcatc tgtaattcca attgtaaagc gcggttttgg tttttctgtc gttaggtgcg
     5701 aataaacacc gagaatctgg tctggtgtaa catcttttga acctaagcca tatctaccgc
     5761 caataactag tggacgagtt tcactatcat aaagcacact ttgcacgtcg agtaaaagtg
     5821 gttctccgcc tgatccgggt tctttcgtcc ggtctaaaac agccacacgt tctactgttt
     5881 tcggtagttt tgctaaaaag ttttctgctg ggaatggacg atataagcga atattgagta
     5941 atcccacttt cttgccttcc gttgttaagt aatcaataac ttgctcaatg actggcgtta
     6001 ctgagcccat cgccacaatg acatctgttg cgtcttctgc tccataataa ttaactaagt
     6061 cataatccgt gccacgaagc tgattgattt ctttcatata attttgaacc atgttaggga
     6121 tttcctcgta atagcggttc accgtttctc tttgttggaa aaagatatct ggattttgat
     6181 tcgaacctaa agttttagga ttatttggtg tcattgcgcg atttctaaat tgttgtaatg
     6241 cctctttgtc gagcaaattt tctaattcgt catattcgag tacttcgact ttttgtaatt
     6301 catgacttgt gcggaagccg tcaaagaaat ttaaaaatgg caaacttcct tttagtgaag
     6361 ccagatgagc aaccgcggat aagtccatta cttcttgaac ggaaccttct gcaagcatcg
     6421 caaatcctgt ttgacgtgct gccatcacat cactatggtc gccaaaaata tttagcgagg
     6481 ctgctgaaat tgttcttgcg gaaacatgga aaacagttgg caatagttca ccggcaattt
     6541 tgtacatatt aggaatcatt aaaagtaaac cttggctcgc cgtgtatgtg ctagttagcg
     6601 caccagcttg aagtgatccg tgaactgttc ctgctgctcc tgcttctgat tgcatttcta
     6661 ctacttttac aggttcattg aataaatttt tcttgttctt tgatgaccat tcgtccacaa
     6721 gttcagccat ggtggaggaa ggggtaatcg gatagattgc tgcaacttca gtaaaagcat
     6781 aagaaatata agctgctgcc gtgtttccat ccattgtttt tctatttcgc ataagactca
     6841 acacttccag tcattctagt tttataatca ttcttatttt acaccactat ccgcttatac
     6901 tcaatgcttc acaaggacta gtaaaagtgt agatttttaa caaaaaaaag aaaccagacg
     6961 tcaaatagtc tagttccctt tagaattatt cgtttaattc caaaacagat tcagcaatgt
     7021 tgttcgcgtg gtcaccaatt cgttctaaat cactgacgat atcaatgtat agaattccgc
     7081 taacgacttg gcatttgcct tcgtttaagc ggcgaatatg gtttttacgt aatctgcgct
     7141 ctgctttatc aatatctttt tctactaaaa tagtttcttc tgcgagtgcg cgatcttttt
     7201 tatgcatgga tttcactgca cgttcgaaat tcgcggttgt tagctcaaac atttcgatga
     7261 gttgatcaga agcttcttca gacatttttg ctttattctt aatcagttga tcgatgtttt
     7321 ctacgatgtt ttccatgtga tcaccgacgc gttcaatatc acgaacggta tcaagcatta
     7381 gcgcatgttc ttctgtctcg ttgttcgtta gggcgacaga agaaattttc gttaagtact
     7441 cggtgatttt tcggtctaaa ttatttacgg cttcttccac ttgaatagtt gactccgcat
     7501 gcttcgattc ccggttcaca aggtattgtc tcgcttcttg caacccgaat ttcgcgtaat
     7561 ctgccatacg aagcgtttcc tcccgtgcca tttcaagagc gataccagga gattggtcaa
     7621 ttaaattcgt atccaaatgt ttggttttat agtcaattcg cgagtcgtcg ccaggaataa
     7681 gcttcgtaac aagccatgca aatgcgccga taaaccagaa ttgaataaag gtattcgtaa
     7741 tattaaacgt cccgtgcgca accgcaatcg tcatttctgg gtttagtcca aacagtcctt
     7801 gtaggtaggt aaccagagaa gtgaatagcg gtagtatcag cataaaaatg attgcaccga
     7861 ttaaattaaa gataacatgt gtagctgctg cacgtttcgc tgcaacactc gcaccaattg
     7921 ctgcaagaac agctgtaatc gtcgttccaa tgttatcccc gaataggact ggcaaagccg
     7981 cttgaagatc aatcgcacct tgtccgtata attcttgtaa aatcccgatg gtcgcactag
     8041 atgattgtac aactgccgtg aagatcgttc cgattaacaa acctaagaat ggatttgtac
     8101 tcatttgagc agttaattca tggaaagatt ccattccagc aagaggtttc atcccttgcc
     8161 ccatcaaatc tagtccataa aataaggcac caaatccaaa gaatacttgg ccaatatttt
     8221 tgactttatg atttttaaag aagaataaaa gtactgcacc agcagcaatt attggtaaag
     8281 cgtattcgga tagcttaata ccaataataa aggcggtaac ggttgtaccg atgtttgctc
     8341 ccatgataac accaattgct tgttttaacg tcataaatcc agcacttact aatccgaccg
     8401 tcaaaacagt tgtacctgag ctactttgaa ttaatacggt tactaaaatc ccggcaagta
     8461 ctcccataaa aggattcgtt gtgtacttat ctaaaatatc acgaagtctg tcgccggctg
     8521 ccatttgcag tccgtctccc atgtatttta taccgaaaag aaaaattcca agtcctccga
     8581 taaattgaaa aatcatctgc tgaatattta tgtctcccat gaatatctcc tttttgtttg
     8641 taatcttgta atttcactct tttttcatca taaaagaaag taaaagtaac gtaaatacct
     8701 tttttttatt ttgtaaagtg aagtccaagt aaatctctga aagttgttga tactaaaggc
     8761 tttatcacgt tccgaatgta ttgttaagtt tttgtaaagg taggcttaat aatttatttt
     8821 attttccact gcgtaatttg ttaataaatt cttttgcagc aactacattt aattgtttgc
     8881 tttcttgtaa aaatgtggct actttttcga tttcatctgc ttctgcaccg gctgtcatgg
     8941 ctagtgattt cgcttgtagc gacatatgtc cgcgttgaat tccttctgtt acgagtgctt
     9001 ttaaagcagc gagattttgc gttaatccaa cggcacaaac taacatcgct aattccttcg
     9061 ctgattctac tcgagcaatt tttttcgaaa gtgttgcgat tggatggatg ccgatagaac
     9121 ctcctacaaa ggctactggc atcggtaacg ttaattcccc aaccaaatac ccctccgcat
     9181 cttttgacca tttagacatc ggtttatagc ttcctgttct agctgcgtag gcgtgacttg
     9241 ccgcttctac cgcgcgccaa tcgttcccaa acgccataat taccgcatca ataccattca
     9301 ttattccttt attatgggtt gctgctcggt aaatgtctgc atcagcaaat tcatatgcag
     9361 caatgattcg atcacgaacc cattcaccac tctgggtttt ggtcgctaag ctttctggat
     9421 taatccggca aacagccgtt gcggtcgctt catctactaa attagataaa atgcgcatat
     9481 tggctgttcc gttcgtcaac atttctaatt ctggcgctaa ggtttcgacc atcgtattga
     9541 ccatattcgc gcccattgct tcttgggtgt ctacgagtaa atgaacgata agtaacgttt
     9601 cgtcattcgc tgtttgtgct gttctaactt gaatttcaac cgcaccaccg ccacgctttt
     9661 gtaacgatgg atgagcttgg ttagcgatag caattagttg ttcttcgttc gcaatgatgt
     9721 tttcttttgc tgcttggata tcagaaacag aaatcaactc aatctgacca atcatttttc
     9781 gttttgttgc acttccagtt atcccgccat tttgtccaat aagtttcgcc ccagcgcttt
     9841 gggccgccac aacagaaggc tcttccatca ccatcggtac cacataatgt ttatcattta
     9901 aaagcatgtt cattcctaat ccgagcggca gcgaataaat gccaatcgtg ttttcaatca
     9961 tatgattcgc tttatcaaaa gaaagcgccc ctgtagaagc taaaaatgcc tgctcttctt
    10021 catttaagtc ggcatattcc gccaaaattg cacgtcgttc ttctactgtt tttttgtaaa
    10081 atttatcaaa agcattcata gctttatcac ctcaaattaa aatttatcca tctacttgac
    10141 tatagcatat ttcgaaactg gatgtaacgg tcccagaaat ctccgtctaa ttcagcacgt
    10201 ttctttggtt tttcccattt cccgactact ttgccctccg tgataatcgc cggtctgaaa
    10261 atcccatttt tcgtcataat ttcatcgtgc catatttccg gtaaaacgac ggagcgatct
    10321 cggtagccga taatccattc atcgaaacca gcgagtggaa ttgtagttgg cattgtgcca
    10381 ttttcaacca atgttgttat gtaataatcg cccattttag gcatatccgc tattcctatt
    10441 ttggcatcgg tcacagttaa tcccgaccaa aaacaaaaat ctttcaaagt agctggtgca
    10501 tggctttgga tgtatcgttt ggctaattct tttattgctt cttctcgagt gaaatgattc
    10561 gtatcagccg gaatatgcat cgtatttcta aaagtttcat tcgggcctga acaaatgact
    10621 ttccgcgagc ttaaataaac taacagctga gcaaaaggaa tccctgcact cggtaaatct
    10681 ttggtcgcta aatgagccgc caagtctttt ctcgtaacgg cttgttctga aacaatttcc
    10741 gaaacgactt ctgtagcctt atgaagaacc tcatctgtta agcctaattt cgctcggtat
    10801 ggcttacata ttttatctat ggaaggcgca attaaatcca tcatccagtg ataatctttg
    10861 gctgaaaaca agtgaattgt tccgcgcaaa agccatgtcc ggataatttc accattatta
    10921 atcgcttgct ctacagcctt ttcacttggc gtcgtcattc tactcccaac agcccagagc
    10981 gactgaccat agttttgcga ttgcattgct ccaaaatgaa aaacaattct ttccggagag
    11041 tcactccacg cagtttgtat taatttctga ctttgaaagc ggttttctat tattgttttt
    11101 gcgtccatct gttaacctct ttttttagtt tattgtagca taaaaatccc ctccagttcg
    11161 ataagctgga agggattttt tcactattag aaattaaagt tgtctggatc tgggccagtt
    11221 ctttcgtctt tatttaaacc gctgattttt gctacttctt cttcgcttaa ttcgaagtcg
    11281 aaaatatcag cattttggat aatacgttct tggtgaacgg attttggaat agtcacgaca
    11341 ccgatttgta aatcccaacg taagataact tgtgcaactg atttaccatg tgcatcggca
    11401 atcgctttga tttctgggtt agaaagtaat ttcccattac ctagtggaga ccaagcttct
    11461 actacaatgt tgttttcagc acagaattta cgtaatggtt cttgtgttag ttgtgggtgt
    11521 aattcaattt ggtttaccat tggcgcaatt tccgcgtctt ccattaattc ttttaggtga
    11581 tgttcgtgga agttacatac gccgattgcg cgaacgcgtt tatctttata taatttttca
    11641 aaagcgcgcc aagtgtcttt gaatttacct ttgactggcc agtgaattaa atataagtct
    11701 acataatcaa gttctaattt acgtaagctt tcatcaaatg cagccaaagt ggattcataa
    11761 ccttgctccg cattccaaag tttcgttgtt acgaataagt cttctctctt aacgccagac
    11821 tctttaatcg cttgaccaac gccttcttca tttttgtaag cagcagctgt atcaatacta
    11881 atgtaaccag cttcaatcgc ccatttaaca gaatttactg cttcatcgcc gtcctgcact
    11941 ttccatacgc caaatcctaa acggggcatt tctacaccat ttgctagttt tactgtatct
    12001 tttaagttca atttatccgc ctcctaaaag taataacacg tttactatac accttagagt
    12061 atactcaaag gcaaacattt ggcttttcga ttttcaaggt gctattatta agaaaaaaag
    12121 aggtggtttt agtgcaacaa acaatcaaag aagcttctga acacacgggt ttaagcgccc
    12181 atacgattcg ctattatgaa cgagaaggat taatcccttt tctagcacgc gataaaaata
    12241 ataaccgaat ttttgataat gatgcccttc actggcttga attactcacc tgtttacgcg
    12301 tcaccggaat gccccttgcg aaacaaaaag aaattgttga actaactaaa ggcggtgacg
    12361 gtactgtctc cgaacgcatc gctgtactga aagaacatca acaagatatg taccgccggc
    12421 aagcagagct agaccgagca tttaaaaaaa tcgagaaaaa attagcttgt tacgaagagt
    12481 tagaacaagc agtaaataaa agtgtggacc agtttagcta actgatccac acttttttat
    12541 agttgttttt tctttttccg atgtctttta ataagataaa taagtagacc aatgattgcg
    12601 acaagtagaa tcccaccaac aatcgcaatg ttttttacgt ttggtacagt gacttcaaaa
    12661 tacatttcgg attttttgtc gagcggcaca tcccaagtga gcttcccgcc atccacactt
    12721 ttagcattgt tctctccaat tgacgaaatc ggtaaatcca aaataaatgt ataatcaact
    12781 tggcttaaaa tttcttttgg aaacggaaca tccgccactt cttttttcca tatcttttcg
    12841 atgtcaatat cggcatctac tttgattttt tgtgtgaaga aacttttgct attggtaatt
    12901 tttaccccaa aatcttccgg tttcatatcg cttttcgttg tttcattttt atctagtttc
    12961 ttttcgatat gatagcttgt atttgatttt ttatctactg taaatccagc ttctttcagt
    13021 ttagcttcta cttcatccga gtaacttgag gcaaaaatcc ctgctacaga agaaatatcg
    13081 atatcaaagg aaatggtcgc ttcccctttt ttatccactt ttactgtatt ggttacatcg
    13141 gcacatccag caagaattag aactaaactt agtaccactg cgaaaataat ttttttcatt
    13201 ggttggcctc atttcttatt tttgcatatg ttcatattca tgaccgctaa gtatgatttc
    13261 tccagtcaca tgaaatccta gacgttcata aagcctcttg gcatgcggat ttcctttgtc
    13321 acaatttagt cctactactt tttcaccatc ttctgcagca atttctgtta attttgcaag
    13381 aagtgctgtt ccaacaccat gaccgcgata tttttcgttt gtaacgatcg aatctaagta
    13441 ccattcacca ggaaatgttt ctttatcggc aaatattggt tcttcgtatc taatgccgtg
    13501 tttctttgca atctcgttcc aagcgcggtc gatttcaggt tcgattttcc caggatagcc
    13561 tgccaaaact cccgcaatat ccccgtcctt ctcatagaca tgcagatgtc tataactata
    13621 acgataatct tctgtctgaa tcgcttcaat tagcgcattt gtaatcgctt cttccgtctc
    13681 tacttctaaa ataggtaatt ccatatcttt ccatattact agtaaaagtg gtgctatttt
    13741 tggtgcatct gattttttcg catgtcgaat caattttaca tcctcatttc taatttcatt
    13801 gtctcatttt actattcttt ccgccccact tgcaaaaata aaatgctatt aggatcactt
    13861 tcctccaaat agcattttat tcttattgct gtgcagcttt ttgtaagaag tctaatgctt
    13921 tacttgttaa atctgtatct tccataattt taggttcttc ttgcgttaat aatttggtta
    13981 gttttttcgt atcttcaacc gttaaatatt ccaagttttt caagctgtgt gctattggta
    14041 aaactgattt catgtaagct tttagtgctt ccaagcctag attttctgtc aaaatacctt
    14101 gacgtaataa gagccttgct ttatcagtaa tatctacatc taaactcaca tcatagccta
    14161 aatgttgttg ttcggtatca tgattgtcta aaaaatgtac ttcaatggca atctgttcta
    14221 cgtcatacac ccgtaaacga atgcgcatat ctgactcaaa gactagtttt atacgaaaat
    14281 ctgcccctag ctcctcgttc atttctacta cttcccctat aagccaagca tgaaaagcta
    14341 gtagtttttg acgtacttta ttatttttaa tgtgttccaa aacatatggt agcacaattt
    14401 tatttgcatc atctgtccag taagttggta gatctcgcca atatttttct gtatccgcac
    14461 tcgttccatt gactagaaga agcggatacg gataggcact catatcacaa aattgatttt
    14521 tttgaagttc atataaaaat ggaatcgttt ttttcaccgt tttactttcg attccaagtt
    14581 tttcaacaag tggtgcgata acaatagcaa tttctccgat tacttcctcg gcccgcattt
    14641 gcgccgcttc attgtctgga tagcgtgtac caatgttttt accaaagtta cgctctaata
    14701 atgcggctac caatttttct gtttcgttca tatagttgcc ctccttcaag cttttgctct
    14761 ttttcgctga ataagctttt gaatttctac gaataggagt gggaacatcg agaggatgaa
    14821 tgcgagaatc cagtgcgtta agctcatttc tactaagaag aacatgttcg caagtggtgg
    14881 aataatcgca agtcctaaaa taatcaacat cgaacaaatc gcgctaaaga acaaaccacg
    14941 gttagataaa aatccgatag tgaaaatcga tttatcactt cttacattga aaatatgcgc
    15001 gacagatgac catgctagaa taacgaatgc cattgtcatt ccaacttcat agcttgcacc
    15061 aatcgaatta ttaatcgtta caaactgccc gatataaaat cctgcaagtg tcacaatcgt
    15121 aaagacaacc gcttgtgtcg ccattttctt gccaagtcca ttcgcaaaga tccctgcatt
    15181 ttttggaatt ggcttacgct ccataatcga gtcatctgcc ttttcacgac ttaagaagaa
    15241 gcctggaatc ccatcagaca caacgttgat taatagcaac tgaacagcta caaccggcgc
    15301 gccccagcca agaataatcg caattaacat aatgaaaatt tgagaaaagt ttgtacttag
    15361 taaaaagtaa atcgttttgc ggatattctc ataggctgta cgcccttctt tgactgcatc
    15421 tacaatcgtt gcaaaattat cgtctgttat aaccatatct gcagcgtttt tagatacatc
    15481 tgttccggta attcccattg cagcaccaac atccgctgct tttagagccg gtgcatcatt
    15541 tacaccatca cctgtcatcg tgacaatttc accatttttc tgccaagctt taacgattcg
    15601 aattttatct tctggactaa cacgcgcata taccgcataa tctcgaatgt ttttctccaa
    15661 atcagcttct gacatttcag caagctctgc tccagtaatc gctttgtccc catccgttag
    15721 aataccaatt tcttttgcaa ttgctgatgc cgttacaata tggtcaccag taatcattac
    15781 agtcttaata cccgcttttt tcgccgctaa cacagccgct ttactttccg gtctcggtgg
    15841 gtcaatcatc ccgaccattc ccgcgaacgt taagtctgtc tcaagcgcct cactagacaa
    15901 gtctgtcggc atttccggat attttttata ggcaacaact aacacccgaa gtgcatcctc
    15961 cgcaaaactg tcatgcaccc gctccgcttc cgctaaaaac gcctcggaaa agtttacggg
    16021 aattcggtca aaagcacctt ttgtaatgga aagaaatccg tcttctactt ggtgaattgt
    16081 cgtcattagc tttctatctg agtcaaaagg aagttcgaac acgcgtggat atttggcttc
    16141 caatgctttt ttcgttgttc ctttttcttc tagtaaacgg ataatcgagc tttcggttgg
    16201 gtcaccaatg atggtttctt cgccgtctgt tacatcaatc gtcgcgttac tggaaaggct
    16261 caacatttct aatacttttt gttctgcagt atcaaattca gctgttgctt ttatcggtgc
    16321 gtggtctgct gcccaaattt gttggataat cattttattt tgcgttaatg ttcctgtttt
    16381 atcagaacaa ataacagacg tatttccgat tgtttctact gcaggaattc ggcggataat
    16441 cgtatttttc cgcaccatat tttgaacgcc gtaagcaagt gtcaatgtca caataactgg
    16501 caatgtctca ggaactgctg ctacagctag agaaatcgcg atcatcaacg tttcaataat
    16561 cgtttcaccg taaacatata catcaatgat aaaaattaaa atacctgcta aaagtgctac
    16621 aatactaagt cgttttgcta attcttttaa gcgaagttgt aaaggcgtca tcagttttga
    16681 ggtgctgttt aaaagtccag caattttccc catctctgtt tccatcccaa tttctacgac
    16741 aaccgccgtg gcgcgcccat tcgttacaag gcagcctgag taaagcatat tcagacggtc
    16801 gccaattggc gctttttccg aaacaaccgc atttgcgtct ttttcaactg gaacactctc
    16861 accagttaac gcagattcct cgacttgcaa actgctacta gaaataatcc gtgcatctgc
    16921 tggaatcata tctcctgcaa caatttcaat aatatcccct ggtactaatt ccgttgcgtc
    16981 cacttgcatc cgcacaccat cacgaacgac cgtagttaaa tgcgcattca tactttgaag
    17041 tgccgcaagt gctttctcgg cgctgttttc ctggtaaatg ccgagcacca tattcaacac
    17101 gacaattcct aaaataacaa ccactttcgc ccaaccataa ccagtcgtaa tcgctaaata
    17161 agcggaaatc gccgctgcaa aaagcaacac aatcgtcgta atttcaacta aatggtgacc
    17221 aattttttga agaagtgatt ctttcttccc ctcttcaaat tcattcgttc cgaactctgc
    17281 atgtttttgt ttcacttgtt ctttcgttaa ccctgtgtct aaattcgtgt gtagtttgct
    17341 gagaagttgc tcaattgact cttttaccca aagcatacat ctacctccta cgcacctact
    17401 cccaaaagca agtacttact ttattttatt gcaaaaaaat attaatttaa atatatccga
    17461 tttcttagtg taattgtata atatatcacg tttatttgca agtattttgt ttttattcac
    17521 aaatccttat tattttgaga catgacttcg cagtagatta ggcttatact aaagctatta
    17581 attgtatagg agatgatgag atgtcttttg cagttccata cttagttttt aacggagaag
    17641 gtcaagatgc gctaacattt tatgcggatg tgtttcaggc tgagattaca agcgttcagc
    17701 gttttaaaga gatgaacaat tttgatggca atgccgtttt tggtgagcga ttgatgcata
    17761 gtcgtttagc aaaaaatggg gaagaattta tttatattac cgatgcgcct tatgatggtt
    17821 ttacaattgg caatcgggtg acaatcttga ttaactttga aacagaggag gatattaagt
    17881 acgcctatga agttttgagt gctacgggca aagtggaaat ggagttgcaa gtggcgttct
    17941 ggggttcgac ctatgcgcag gtgacggacc agtttgggg
//
LOCUS       DASEAA010000039        17864 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.039, whole genome shotgun sequence.
ACCESSION   DASEAA010000039 DASEAA010000000
VERSION     DASEAA010000039.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17864)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17864)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17864
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.039"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            84..542
                     /locus_tag="U0342_001149"
     CDS             84..542
                     /locus_tag="U0342_001149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2422501.1"
                     /translation="MNNEQNMNQQIALFYFGYKAFTETADLIIAKHSLKRLHHRILFF
                     TARMPGLTINELLTFLEISKQALHQPLAELKERELLTIEQGRRDKRQRCIFLTTAGKE
                     LENELGAAQRKQMAEIFANSSDTDGLHFTEVMEGYAKNRPGAALIKDFKE"
     gene            549..908
                     /locus_tag="U0342_001150"
     CDS             549..908
                     /locus_tag="U0342_001150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lin0512 family protein"
                     /protein_id="HEM2422502.1"
                     /translation="MEQILFIQTGFGVDVHGQNITKAAERAVRNAIFTNSMPGIQGLL
                     PDGDLQNMVVNIKLALPCDEEKLDEDTIRAIIPYGTVTIEKMAGGMMTTSGIFLEDKE
                     DKNDLMYIVNASVETGY"
     gene            complement(933..1613)
                     /locus_tag="U0342_001151"
     CDS             complement(933..1613)
                     /locus_tag="U0342_001151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM2422503.1"
                     /translation="MIIDVLQHVPHEGPGLIANWARENQHQLKIHSLFEENAHVPNDS
                     DFLIVLGGPMGINDTAEFPWLKDERKLIKRLSEQHKPVFGVCLGAQQIAATFGSEITV
                     NKEKEVGWFPVKRTSDKLSFFPESLNVFHWHQDTFALPAGATRLFASEGCLNQAFLYA
                     ENIIGLQFHFEMEKAGIETILQIDKAFITSGKYVQSVEVMREKDVPEDNKQMLEAILD
                     YLINPKTI"
     gene            complement(1720..2298)
                     /locus_tag="U0342_001152"
     CDS             complement(1720..2298)
                     /locus_tag="U0342_001152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422504.1"
                     /translation="MKKILVPILLLATILASCSSPNEKITKDTKISKTITIRADYKIP
                     KDIKELEDNSANIVKVKFLQNKTIGKDGSTISEIEILTSYKGNLEKGSKVDISEPWYL
                     SDGKYVAVENYIALDKGQEYTIFLGEKDKDTYPLSSMGYGKFGGSLKEDQAVLADFNI
                     LGEVQKFDFISENTEEVKNYQLIKEQVAGKYK"
     gene            complement(2920..3855)
                     /locus_tag="U0342_001153"
     CDS             complement(2920..3855)
                     /locus_tag="U0342_001153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate pyrophosphokinase"
                     /protein_id="HEM2422505.1"
                     /translation="MAGKMKLFSVTSERPLATKIADYLDIPLCEVELQKFSDGEVKIN
                     IEESIRGTNAYVVQSMNSNVNERLMELLIMVDALKRASVHSINIIMPYYGYARQDRKA
                     RSREPITAKLMANLIQRAGADRLITVDLHAAQIQGFFNIPIDHLSAIPLIGDYLIENY
                     GEKDVVVVAPDHSGVVRARRIADRLNAPIAILNRKPRPHEDEIMSVIGDVKGKVAIVV
                     DDIIDTGVRATTSADILLEKGAVEVIACATHSVMAGNATERLQNSNIKEVITSDSIDL
                     PEDKQFDKLTTISIGRILGRAIEGVQENRSLHPLF"
     gene            complement(3995..5266)
                     /locus_tag="U0342_001154"
     CDS             complement(3995..5266)
                     /locus_tag="U0342_001154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS galactitol transporter subunit IIC"
                     /protein_id="HEM2422506.1"
                     /translation="MDIILDFFKYIIGLGVTVMMPIIITILGVIFRKKISVAFKAGLT
                     VGVGFVGLGVITSLMLTTITPVTKALVENYNFKLTATDIGWGVGSSLAWGTEVVPFVF
                     VAIIATNILMIAFKWTKTMDVDIWNYWQPLFIASALYLTTGSMIIAILSSIINMAIIF
                     KIADWTQKDVENVLGLEGISLPQIQTTGWALVGYPMNWLLGKIPGVRKINWSTEKVQS
                     RLGIFGEPMLMGLIIGGGLAAIAQMPLSQVLQTGVTIAASLVLIPRMVSLLMDGLTVI
                     SEAAHEFMEKRFPGRELFIGLDSAVGIGHPFVLSLGLLMIPITLILAFILPGNKVLPL
                     ADLTALPFYMIFAIVPSKGNLFRGIFTGIVIVIITLYLSGAAAPLMTELAGQIGYNIP
                     KDAVEVTSLAVGTQWYTWIVYYGLHWFGGIL"
     gene            complement(5281..5574)
                     /locus_tag="U0342_001155"
     CDS             complement(5281..5574)
                     /locus_tag="U0342_001155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2422507.1"
                     /translation="MKKKKIYVCCGTGIATSTVISKKVRAVLDEKRIPYEISQCTVQE
                     VASKVSTSKPDIIVSSTTVTGDVGDVPVVIGRSFLTGLKKQEAIDEILAILQD"
     gene            complement(5590..6636)
                     /locus_tag="U0342_001156"
     CDS             complement(5590..6636)
                     /locus_tag="U0342_001156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactitol-1-phosphate 5-dehydrogenase"
                     /protein_id="HEM2422508.1"
                     /translation="MKALKLYGKRDLRYEEADMPTIEQPDDVILKVKTVGICGSDISR
                     YSKLGPYVPGMVWGHEFSGEVIEVGSEVTDIEIGDRAAGCPALYCGECEYCKKGEFAR
                     CRKLTVIGARHPGAYAEYIKLPAENVVKIPDELDYEAAALVEPSAVVVHGFYHTKLQA
                     GDDVVVVGSGNIGLLAIQWAKVFGAKRVIAIDVDDKKLALAKEVGADVVINSLKEDPL
                     EVVAAHTDGLNADLVVEAAGSPITSAQVFAYAKKGGGVVFLGIPYADVTIERFYFEKI
                     VRSELTVWGSWNAISAPFPGKEWQTTIHFLANKQINIEPMITHRLSLAEGPEVFERIY
                     ERNEFFGKVLFFPE"
     gene            complement(6633..7283)
                     /gene="rpe"
                     /locus_tag="U0342_001157"
     CDS             complement(6633..7283)
                     /gene="rpe"
                     /locus_tag="U0342_001157"
                     /EC_number="5.1.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2422509.1"
                     /translation="MAKIVPSVFGADIGRINEQLEVLEKNGIDLLHVDMMDGSFVPNI
                     AFGPDQIKMMKKGTKLQFDVHMMVYEPDRYIPRLVEAGAHMITVHQEATTHLHRTIQL
                     IKSYGVRAGVVLNPGTPPSTLEYVLDDIDCILLMTVNPGLGGQKFFQSSLEKIRKTKA
                     YIGNRPIQIEVDGGVNAELAKECTLAGADLIVVGSYLFEGDIEANLEKLSKGVLTE"
     gene            complement(7294..7692)
                     /locus_tag="U0342_001158"
     CDS             complement(7294..7692)
                     /locus_tag="U0342_001158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422510.1"
                     /translation="MGSFFASFVDWLIGSPGRFVVNLIEDNMLIFMFVVMIYATTILY
                     AKWTLAYYLPKKMNQLAEMKTWELDELYAAWQTEKKALPWYILVPSRNEFWVKSARNA
                     PESTKLLHFSQQKLKLSDKEKLQKIIEIQS"
     gene            complement(7709..8176)
                     /locus_tag="U0342_001159"
     CDS             complement(7709..8176)
                     /locus_tag="U0342_001159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2422511.1"
                     /translation="MDVLEYFKEEMVRFSNEQDKEKLLTEMAEQLCEVGAVKPSYKDA
                     VIKREKVFPTGLLTAHAGVAIPHTDSEHVIRPVVAVRILKKPVSFIEMASDNEAIDVR
                     IVFMMALRSADEQLDMLQTLIHLIQDEEVMTTLLKAQETGDVLSAIEHFSKNN"
     gene            complement(8204..8806)
                     /locus_tag="U0342_001160"
     CDS             complement(8204..8806)
                     /locus_tag="U0342_001160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SIS domain-containing protein"
                     /protein_id="HEM2422512.1"
                     /translation="MDKQAILDNIHQTWQEEANAISRLPEVTSEEALVKTVEKIAECT
                     GKIVVAGCGTSGVAAKKLVHSFNCIERPAVFLTPSDAVHGTLGVLQKEDILILISKGG
                     NTGELLNLIPACKTKGSTLIGVTENPDSVIAKEADIFFPVSVSKEPDPFNMLATASTM
                     AVIASFDAVIVCLMTYMNYTKEQFSVIHPGGAVGNKLLNK"
     gene            complement(8810..10870)
                     /locus_tag="U0342_001161"
     CDS             complement(8810..10870)
                     /locus_tag="U0342_001161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2422513.1"
                     /translation="MYLDNRSKTLFQEVIKNPNITNKQLEVKYKLSRYQISYSFQKVN
                     EWLKWKNYPEVKRSKNGRFILEPELTALFSEKETRDPSVEYLPSENERANLILLMLLT
                     AKEELSLAHFTTKIQVSKNTILRDLKVAQKLLPKETTVTYSRASGYQLAGSEWELRKV
                     LTQVVSSVKEMFRGEHYFLSYSGIEKVQLMEIRRTLEEAEAMMQIKFTYEQIELLPYL
                     LSVMFLRIRDRRLIDTAFHIDEKSLSDTREYHITDILLEKTGPVPEQERLFITLQLLT
                     TNIFSGEILTEKLTEDLEKVVLTCLDLFEKKALVSLKNKHILIEKLLLHLKPAYYRIK
                     YQMNLEDTLYEKFNQEFEALNFIVKEAFDPLAKFIGREIPAGEIFFISLFIGSDMIPQ
                     NDIYHKQKRAIVLCPSGVTFSKIMENILVKLFPEIHFYPTISVREYAFFKAEVDIVFS
                     SIPLKDGENVFVVQPFMNDIEKTQLRQHVLQNLFGMGNQLTSIDKIMEVVERNADIKD
                     PNAIRDGIIDILSANTATDENKRVKKVYLHDLITEDNIMICEDVKNYQEAIRLASQPL
                     LLQQAITANYVKTMIDNHKFHDPYIIIGEDIAIPHAMPNAGVNRLAMSLLVVKNGVYF
                     SETEQVHFVIVIAPVDKEQHIEALYQIVHLAENHQILDDLLENVTKEKVMQTINQLVI
                     REDE"
     gene            complement(10978..11628)
                     /locus_tag="U0342_001162"
     CDS             complement(10978..11628)
                     /locus_tag="U0342_001162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TalA family protein"
                     /protein_id="HEM2422514.1"
                     /translation="MHLDSANLEDVKKIQASSIFKGITTNPTILVKEKCNRQTAINRI
                     LELTDKQVFVQTVGFSYEEILADARMLLAMFGKEKIAIKIPAHEAGINVIDTLKKEDK
                     TIQILGTAIYSADQAIAAALAGADFVAPYVNRMSAANIDPFKEIAGMRHFFDKKALKT
                     QIMAASFKHSGQVMQAYESGADTVTIPYEIYSQMTNKVLAVEAIRVFNEDATLYEK"
     gene            complement(11635..12303)
                     /locus_tag="U0342_001163"
     CDS             complement(11635..12303)
                     /locus_tag="U0342_001163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribulose-phosphate 3-epimerase"
                     /protein_id="HEM2422515.1"
                     /translation="MKMIAASIMCSDSLHLADELRALEQANVKMLHCDVMDGVFVENA
                     AMGAYVLQDIKNNTDMLLDIHLATVNPDKFVDLYAAIKPAYMSFHVEASPDVDATIKH
                     IRALGIKPSIAISPDTEIEQIYPFLDKVDMVLMMTVNPGFAGQKFQHHVLEKIKKLQR
                     ELESHTNKPLIEVDGNIFEETVRLLEPIGADVYVVGTAALFNDKAGSYTEKLAPLREI
                     IQER"
     gene            complement(12300..12749)
                     /gene="rpiB"
                     /locus_tag="U0342_001164"
     CDS             complement(12300..12749)
                     /gene="rpiB"
                     /locus_tag="U0342_001164"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose 5-phosphate isomerase B"
                     /protein_id="HEM2422516.1"
                     /translation="MEIAIAADHGGFQLKEKIRAHLIESGYTVKDFGCYSLESVDFPE
                     YAAKVGHFVATENSLGVLCCGTGIGMSMAANKIKGVRAAVVSDAFSAMMTRRHNNSNV
                     LCLGERVLGDSLALLLLDTWLAAEFEGGRHNTRLAKLAELEEPEEDK"
     gene            complement(12916..13140)
                     /locus_tag="U0342_001165"
     CDS             complement(12916..13140)
                     /locus_tag="U0342_001165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF896 domain-containing protein"
                     /protein_id="HEM2422517.1"
                     /translation="MKLLLKNINELAAKQKSEGLTAFEKERQAALRQEYLKKIRGTVQ
                     DNLHHVTIIDPLGDDVTPKKLKEIQAELRG"
     gene            complement(13215..14174)
                     /locus_tag="U0342_001166"
     CDS             complement(13215..14174)
                     /locus_tag="U0342_001166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DMT family transporter"
                     /protein_id="HEM2422518.1"
                     /translation="MQKEKAPIGLYFLLIAVMASWGFNVTMTKVLVSYFPTVTMTSFR
                     IFTAAITVIIILFITKKLRLPTKWEFGLIFLASIFNIVIHHFFLSNGLKLTTGTNAGL
                     ILGSAPIVVAIFSVVFLRERIGAWRALGFLAGIFGVSLVVLSNGTGISGISLGDIDIF
                     IAMASQAFSFIIIKKLAGSMDTGLMTGYMLFLGSVMLFGLSRFMEPGGMSELVAVHSW
                     KLWLLFVVSAVVATAFGNFVYNYAVGKIGPSRSAIFMNFNPLFSLIGALLFLGEAIKI
                     PQLVGFGFIIIGVLLGSGALMDLIYERKKTKVRDPEKLLEKEV"
     gene            complement(14360..14953)
                     /locus_tag="U0342_001167"
     CDS             complement(14360..14953)
                     /locus_tag="U0342_001167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2422519.1"
                     /translation="MKKLLFLGDSVTDAGRDFENDRELGHGYVKIIADQLEQEDVTVI
                     NRGVSANRVADLHRRIEADAISLQPDVVTIMIGINDTWFSFSRWEDTSVTAFKEVYRV
                     ILNRIKTETNAELILMEPFVLPYPEDRKEWRGDLDPKIGAVRELAAEFGATLIPLDGL
                     MNALAIKHGPTFLAEDGVHPTKAGHEAIASTWLEFTK"
     gene            15145..16905
                     /locus_tag="U0342_001168"
     CDS             15145..16905
                     /locus_tag="U0342_001168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CocE/NonD family hydrolase"
                     /protein_id="HEM2422520.1"
                     /translation="MTAKITEKTLFSPSFEYVDNGIEHGVLSPFETKEIILEKGQQIA
                     EGFKPLDCSIKMLKDVPVKMRDGITIYTDIYLPITEEKVPTLIAWSPYGKSAGTAPRY
                     KNLFNMLGMGNAWNSGLTKFEAPDPAYWCAHGYAVCNPDMRGIAHSEGNTTMIGSQEA
                     EDGYDLIEWLAKQSWSNGKTALTGTSYLAFSQWYIAAEQPPHLTCINPTEGLADGYRD
                     LAFIGGIPDPNFIERLQINHVSAKNSQREDLTKEMEAYPLADSAIWKDKVADPSKITI
                     PAFVIASYSNTLHTMGTFRSWRSLGSKEKWLRIHDRQEWPYYYDENNVEELRRFFDYY
                     LLGKENNWTDTPTVRYALIDFQGGNQTDLPSEVFPPTNSENKRYYMNGLLRTLQETPT
                     SDDFKVSYTTENLPGRASFQMTFDKETHFVGYPKAKLFMEVDGYDDLDVFVWLQKLDK
                     FGNVLSEFVVPNHGAALQDFTQEGASALRYKGAWGRLRASMRQLDSQVSTDEIPAYSF
                     DKVEKLSSGEIVELDIILSPIGLTYKAGETLRVVVSSKDELGSVMPGTPGCTPNNKGM
                     HILHTSKEHPSYIQLPIINK"
     gene            16980..>17864
                     /locus_tag="U0342_001169"
     CDS             16980..>17864
                     /locus_tag="U0342_001169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2422521.1"
                     /translation="MKLSNLKYFVDVAMEGSFTRASEKLFISQPTLSRRIKELETELG
                     VELFIRNRHSLELSSAGQQFLIEVNDILNRVNKLSHMFDNQKTADEAGQLLKIGYLSN
                     FNMNAMYELLESFKQSHPHVQFSLKPDTPMNLAEGLSNGQYDLVFNLSAYFQPNMSIE
                     EVLFIKNHLQIAIPADHRFRKKKKVYFNDLKQEIVILLERKQSPIIVDYVVSQCTKHG
                     FNLKANSYVKDLDEGLAMTSVGEGLAFLYSGMNDGTLEDKYNIKIMDIQEERNDQNIV
                     AAINKQSEITLLQELFSFI"
BASE COUNT         5335 a         3699 c         3111 g         5719 t
ORIGIN      
        1 tctaaaaaag tgatgcgcta actgttattg tgtcccctta tttatgctat actgttgata
       61 ttgacagaaa aaggggtata tttatgaaca atgagcaaaa catgaatcaa caaatcgctt
      121 tattttactt tggttataaa gcatttacag agaccgctga tttgattatt gccaaacatt
      181 cactcaaaag attgcatcat cgtattttat ttttcacggc gcggatgcct ggacttacaa
      241 ttaatgaact tttaactttt ttagaaatat caaaacaggc cctacaccag ccactcgctg
      301 aactgaaaga gcgcgaactt ctcacgatcg agcaaggtag acgcgacaaa cgccaacgct
      361 gcatcttcct aactacagca ggcaaagaat tagaaaatga acttggtgcc gcacaacgta
      421 agcaaatggc agaaatattc gccaattcct ccgatactga cggattacat ttcactgaag
      481 ttatggaagg atatgcgaaa aaccgaccag gcgccgcttt gataaaagat tttaaggagt
      541 gatttatgat ggaacaaatt ctatttatcc aaactggctt tggcgttgat gttcacggcc
      601 aaaatattac aaaagcagcc gaacgagctg taagaaatgc gatttttacg aactctatgc
      661 ccggtattca agggcttctt ccagatggcg acttacaaaa catggttgtt aatatcaaat
      721 tggcgctacc gtgtgatgaa gaaaaacttg acgaagatac cattcgcgcg attatccctt
      781 atggcactgt aactattgag aaaatggctg gcggaatgat gactacaagc ggcattttct
      841 tagaagacaa agaagacaaa aacgatttaa tgtatatcgt caacgcttct gttgaaactg
      901 gatactaaag aaaaaaccat ctgactttct cgtcagatgg tttttggatt tattaaataa
      961 tctaaaatag cctcaagcat ttgtttatta tcttctggaa catccttctc tcgcatcact
     1021 tccacgcttt gaacatattt tccagatgtg ataaacgcct tatcaatttg caaaatcgtc
     1081 tcaatccccg ctttttccat ttcaaaatga aactgtaaac cgataatatt ttcagcgtac
     1141 aaaaaagctt ggttcaaaca accctcacta gcaaataaac gcgtggcgcc agctggtaac
     1201 gcaaacgtat cttgatgcca gtgaaacaca tttaatgatt ctgggaaaaa tgataatttg
     1261 tcggaagttc ttttgacagg aaaccagcct acttcttttt ctttatttac agtgatttcg
     1321 cttccgaatg ttgctgcgat ttgttgtgcg ccgaggcaga caccaaaaac aggtttatgc
     1381 tgttcactta atcgctttat tagcttacgt tcgtctttta accacggaaa ttcggctgta
     1441 tcatttattc ccatgggtcc tccaagtaca attaaaaaat ccgagtcatt tggaacatga
     1501 gcattttctt caaatagaga atgtattttt aactgatgct ggttttctct cgcccaattc
     1561 gctataagtc caggtccttc gtgcggcaca tgttgcaata catcaataat caattgatca
     1621 gctcctgtca tttttttcta ttatgaccga attctaaggt ttgtgcaact gagatttctc
     1681 taaaaaacac ctggttatta atcaggtgtt taagtttact catttatatt tccctgcgac
     1741 ttgctcttta attaattgat aattttttac ttcctcagta ttttctgaga taaaatcaaa
     1801 tttttgcact tctccaagaa tgttgaaatc tgctagaaca gcttggtcct cttttaaact
     1861 tccaccaaat ttaccataac ccatactact aagaggatat gtatctttat ctttttctcc
     1921 aagaaaaatg gtatattctt gtcccttatc taatgcaata tagttttcaa cagcgacata
     1981 tttaccatcg cttaaatacc acggttctga aatatctact ttactccctt tttctaggtt
     2041 tcctttgtaa ctagtcaaaa tttctatctc gctaatagta ctaccatcct tgcctatcgt
     2101 tttattttga agaaatttca ctttaacaat attagcacta ttatcctcaa gttctttaat
     2161 atcttttgga attttgtaat ctgctcttat tgtgatagtc ttggatattt tagtgtcttt
     2221 ggttattttt tcattcggcg aggaacagct tgctaagatt gttgctaaca ataatatggg
     2281 cactagaatc tttttcaata gtagagtcct ccttatatgt attattcagc ttaccttccc
     2341 ttaaatttta gcataggtag attatgtttt atagtacaat ccatagtgaa aaaacggctt
     2401 tttattgcgt ttattgctaa attgttaaca gattgctcgt ttgactataa ttattcacaa
     2461 aaaaacaaaa ccaattaatg agggttttgt ttttaggaat ttatttgcaa ggaataatta
     2521 taacggaaat agataatcat aagcataata ggttttcatt tatatttcat cttaagcaat
     2581 taaaatgaaa gtcattactt ttggttattt tgctgcttct gcatttacaa ttcacaatga
     2641 gtaagtaaac aatactacac gctattgttg ttttccaaag gaaccaaatt tatatttcac
     2701 attaagtaac taaaactttc aaaggtaatc ccttcatcat gactgaggag tccatttaca
     2761 tttcaaaata agtagctaaa acccgctaac ttttcttctt actcccatct tacctcaaag
     2821 agctatttct gacgattccc ggtgtttttc acgctactca aggtcgacag ataacaaaaa
     2881 aacagcaact ctactaagtt actgtttttt gcttattctt taaaacaacg gatgcaacga
     2941 gcggttttct tgtacgcctt cgattgcgcg gcctaagatt cgtccgatgg agatggttgt
     3001 tagtttgtcg aattgtttat cttctggaag atcgatggag tccgatgtga tgacttcttt
     3061 gatattggaa ttttgtaagc gttcggttgc atttcctgcc atgacggagt gggttgcgca
     3121 agcgataact tctacggcac ctttttcaag taaaatatca gctgaagtag tggcacggac
     3181 gccggtatcg ataatatcat cgacaacgat tgcgactttg cctttcacat cgccaatgac
     3241 actcataatt tcgtcttcat gtggtcttgg tttacggttt aaaatggcga ttggcgcgtt
     3301 tagtcggtcc gcgattctgc gtgcgcgaac tacgccactg tgatccggcg cgacaactac
     3361 cacgtctttt tcaccgtaat tttctatcaa ataatcacca attagcggaa ttgctgaaag
     3421 atgatcgatt ggaatgttga aaaagccttg aatttgagct gcgtgtaaat ctactgtgat
     3481 taaacggtcg gctccagctc tttgaattag atttgccatt aatttggcgg taattggttc
     3541 tcttgagcga gcttttctgt cctgacgagc atagccataa taaggcataa ttatattgat
     3601 ggaatgcacg gaagcgcgtt ttaaggcatc taccatgatt aaaagttcca ttagacgttc
     3661 gtttacgttg gaattcattg attgcacaac atacgcattc gttccacgga tactttcctc
     3721 aatattaatt ttcacttctc catcactgaa cttctggagc tccacctcac ataaaggtat
     3781 atctagataa tctgcaattt ttgtcgcaag tggtctctca ctcgtcacag aaaaaagttt
     3841 cattttgcct gccattgcta tctccttccg ccgtactaat ttcttctcct tattattata
     3901 tagaactgtc aatgtgttgt ctactagcta aaaatcatta gtccaaataa aacaagcatt
     3961 agcgcaaact aatgcttgtt tcattaaatt gcaattatag aatacctccg aaccaatgaa
     4021 gtccgtaata tacaatccac gtataccact gagtcccaac tgctagagag gttacttcta
     4081 cagcgtcttt cggtatatta taaccaattt gacctgcaag ttctgtcatt aaaggtgccg
     4141 ctgctcctga taggtagagg gtgataatga cgataacgat acctgtgaaa atccctctaa
     4201 ataaattccc tttggatgga acaatagcaa aaatcatgta gaatggaagc gccgttaaat
     4261 cagctaaagg taatacttta tttcctggca aaatgaacgc taaaatcaaa gtaatcggaa
     4321 tcatgagtaa gccaagcgaa agcacaaatg gatgaccaat ccccaccgct gaatctagtc
     4381 cgataaatag ttcgcgacct gggaaacgtt tttccatgaa ttcatgggca gcttccgaga
     4441 taaccgtaag accgtccatt agaagggaaa ccatccgcgg aataagtact aaactagcgg
     4501 caatcgttac tccggtttgc agtacttggc tcagcggcat ttgagcaatg gcagcaagtc
     4561 caccaccaat aattaagccc ataagcatcg gttcgccgaa aatacctaaa cgtgattgca
     4621 ctttctctgt ggaccaatta atttttctaa cgccgggaat ttttccgagt agccagttca
     4681 ttggataacc aacaagcgcc cacccggtag tttgaatttg tggtaaagaa atcccctcta
     4741 atcctaaaac attctccaca tctttttgtg tccagtcagc gattttgaag ataattgcca
     4801 tattgataat cgaactaaga atcgcaataa tcatgcttcc tgttgttaag taaagtgcac
     4861 tggcgatgaa aagtggttgc cagtaattcc aaatatctac gtccattgtt ttcgtccatt
     4921 taaaggcaat cattaaaata ttggttgcaa taattgcgac gaaaacaaat ggtacgactt
     4981 ctgttcccca tgcgagtgat gacccaactc cccaaccgat atccgttgcg gttaatttaa
     5041 aattataatt ttctacaagt gcttttgtaa ctggtgtaat agtcgttaac atgagtgaag
     5101 tgataacgcc tagtccaaca aacccaacac caactgttag ccccgcttta aaagctacac
     5161 taattttttt gcggaaaatc acacctagaa tggtaatgat aatcggcatc ataactgtta
     5221 caccaagccc gataatatat ttaaagaaat ctagaataat atccattttg tgccctccct
     5281 ttaatcttga agtatcgcga gtatttcatc gattgcttct tgttttttta ggcctgttaa
     5341 aaatgatctt ccaatgacaa ctggtacatc accaacatca cctgtaactg ttgttgaact
     5401 aacaataatg tctggcttag atgtgcttac ttttgacgct acttcttgaa ccgtacattg
     5461 actaatttca tatggaatgc gcttttcgtc tagtaccgca cgcacttttt tggaaataac
     5521 agtggaagtt gcaattccag tcccacaaca aacataaatt ttcttctttt tcatcctaaa
     5581 atccccctat tattctggga aaaataatac tttcccgaaa aattcatttc tttcatagat
     5641 tcgctcaaaa acttctggtc cttcagcaag tgaaagacga tgtgtaatca ttggttcaat
     5701 gttgatttgt ttattagcta agaagtgaat ggttgtttgc cattcttttc ctggaaatgg
     5761 tgcagaaatt gcattccatg agccccaaac agtaagctca ctccgaacaa ttttttcaaa
     5821 atagaaacgt tcgattgtta catcggcgta tggaatccct aggaaaacga cgcctccacc
     5881 ttttttcgca taggcaaaaa cttgggcaga tgtaataggt gatccagcag cttctacaac
     5941 taaatcagcg tttagaccat ctgtatgtgc tgcgactact tctaatggat cttcttttaa
     6001 agaattaata acgacgtctg ctcctacttc ttttgcaaga gctaactttt tatcgtctac
     6061 atcaattgca ataactcttt ttgcgccaaa aacttttgcc cattgaattg ctagcaaacc
     6121 tatattgccg cttccgacaa cgacgacatc atcgcctgct tgtaatttcg tatgataaaa
     6181 cccatgaacg accactgcgg aaggctcgac aagtgcagca gcttcataat ctaattcgtc
     6241 tggtattttt actacatttt ctgctggaag tttgatatac tcagcatagg ctccgggatg
     6301 tcttgctccg attactgtta gcttccgaca gcgggcgaat tcgccttttt tacagtattc
     6361 acactctccg caatagagtg ctgggcatcc ggcagcccta tcaccaatct caatatctgt
     6421 aacctcacta ccaacctcaa tcacttctcc tgaaaattca tgtccccaca ccattcctgg
     6481 tacatacgga ccaagtttac tgtatctcga aatatcagat ccgcaaatcc caaccgtttt
     6541 cactttcaaa atcacatcat ctggctgttc gattgttggc atatccgctt cttcataacg
     6601 caaatctctt tttccatata attttaaagc tttcattctg ttaaaactcc tttcgataac
     6661 ttctccaaat tcgcttcgat atctccttca aataagtaag atcctacaac gattaaatcc
     6721 gcgcctgcaa gtgtgcattc tttcgcgagt tcagcattta ctccgccatc tacttcaatt
     6781 tgaataggac gatttccaat atatgctttg gtttttctga ttttttctaa acttgattgg
     6841 aagaattttt gaccacctaa gcctggattt acagtcataa gcaaaataca gtcaatatca
     6901 tctaacacgt attccaaagt gcttggtggt gtaccaggat ttaataccac tcccgcgcga
     6961 actccgtaac ttttaattag ttgaattgta cgatgcaaat gagttgttgc ttcttggtgg
     7021 actgtaatca tatgtgcgcc tgcttccact aatcttggaa tataacggtc tggttcatac
     7081 accatcatat gaacatcaaa ttgaagcttc gtgccttttt tcatcatttt gatttgatct
     7141 ggaccaaaag caatgttcgg gacgaacgag ccatccatca tatccacatg taataaatca
     7201 atgccatttt tctctagaac ctctaactgt tcattaattc tgccgatgtc tgctccaaaa
     7261 acagacggaa ctatttttgc cactattatc acctcaagat tgaatttcta tgattttttg
     7321 taacttttct ttgtcactta gttttaattt ttgttgacta aaatggagta atttagttga
     7381 ttctggtgca tttcgggctg attttaccca aaattcattt cggcttggca cgagaatgta
     7441 ccacggtaga gcttttttct ctgtttgcca cgctgcatat aattcgtcca gctcccacgt
     7501 tttcatttct gctaactgat tcattttttt cggtaagtag tatgcgagtg tccacttggc
     7561 gtataaaatg gtggtggcgt aaatcattac tacgaacatg aaaattaaca tattatcttc
     7621 aattaagtta acgacaaatc tacctggact tcctattagc cagtctacaa aacttgcaaa
     7681 aaaactcccc atctattccc gacctccctt aattattctt agaaaaatgt tctattgcgg
     7741 aaagaacatc tcccgtctct tgcgctttaa gtaaggtcgt catcacctcc tcgtcttgaa
     7801 taagatgaat aagtgtttgc agcatatcta gttgttcatc ggcactcctt agcgccatca
     7861 taaagacaat tctgacatcg attgcttcgt tatcagaggc catttcaata aatgaaacgg
     7921 gcttcttgag tattcgtaca gccaccactg gccgaataac atgttcgcta tctgtatgcg
     7981 gaatggcaac cccggcgtgc gcggttagta atccggttgg aaaaactttt tcccgtttaa
     8041 ttactgcatc tttatagctt ggctttactg cgcccacttc acacaactgt tccgccattt
     8101 ctgtaagtaa tttttcttta tcttgttcgt ttgaaaatcg aaccatttct tctttaaaat
     8161 attctaatac atccaaattg catccctccg actggctgct tgtttattta tttaataatt
     8221 tgtttccaac ggcaccacca ggatggatga cggaaaactg ctcttttgta taattcatat
     8281 aggtcattaa gcaaacaata actgcatcaa aacttgcaat aacagccatt gtacttgccg
     8341 ttgctaacat attaaacgga tctggttctt tgcttacact cactgggaaa aagatatctg
     8401 cttctttggc gataacggaa tctgggtttt ctgttacacc aatcagtgtg cttccttttg
     8461 ttttacaagc aggaattaaa ttaagtaatt cgcctgtatt tccacctttt gaaatgagaa
     8521 tcaatatatc ttctttttga agtacaccga gagttccatg cacagcatct gatggtgtta
     8581 aaaagactgc tggacgttcg atacagttga aagagtgtac taattttttc gcagcgacgc
     8641 cggatgttcc acaaccagct acgacaattt tcccagtgca ctcggcgatt ttttcaaccg
     8701 ttttaacgag agcctcttca cttgttactt ccggcaaacg ggaaatcgcg tttgcttctt
     8761 cttgccatgt ttggtgaata ttatctaaaa tagcttgttt atccaaaatt tattcatcct
     8821 ctctaattac taattggttg atagtttgca tgactttttc tttggttaca ttttcgagca
     8881 aatcgtctaa aatttggtga ttttcggcta aatgaacgat ttggtaaagt gcttcaatgt
     8941 gttgctcttt atccactggt gcgataacta ttacgaaatg aacttgctct gtttctgaaa
     9001 aatatacgcc atttttcacg actaaaagag acatagcgag tcgattcacc cccgcattag
     9061 gcatagcgtg tggaatggca atatcttcac cgataataat gtacggatcg tggaacttat
     9121 ggttatcaat catggtcttt acatagtttg ctgtaattgc ttgttgtagt aacagcggct
     9181 gacttgctag acgaatcgct tcttgatagt ttttaacatc ctcacaaatc atgatgttat
     9241 cttcggtgat taaatcatgt aaatagactt ttttcacgcg tttattttca tctgtagctg
     9301 tgttagccga caaaatatca ataattccat ctcgtattgc attcggatcc tttatatcgg
     9361 cgttacgttc cactacttcc atgattttat caatactcgt gagctggttt cccattccaa
     9421 ataaattttg caagacgtgt tgccgcagtt gcgttttttc gatatcattc ataaatggct
     9481 gaacaacaaa gacattttcg ccatctttta acggaatgga tgaaaaaaca atatcaactt
     9541 ctgctttaaa aaaggcatat tcccgaacag atatagttgg ataaaaatgg atttccggga
     9601 atagtttcac taaaatattt tccatgattt ttgaaaaagt aaccccgctc ggacaaagca
     9661 caatcgcacg tttttgttta tgataaatat cgttttgcgg tatcatgtcg ctcccaataa
     9721 acaaagaaat gaagaaaatt tcgccggctg gaatttcgcg accaataaat ttcgcaagtg
     9781 ggtcaaatgc ttctttcaca atgaagttta acgcttcgaa ttcttggttg aatttttcat
     9841 aaagcgtatc ttctaaattc atttggtatt taatccggta ataggctggt tttaaatgta
     9901 agagtaattt ttcgattaag atatgtttgt ttttaagaga aacaagtgct tttttctcga
     9961 ataagtctaa gcatgtgagg acaacttttt ccaagtcttc tgttaatttt tcagttaaaa
    10021 tttcgccgga aaaaatgttt gttgtaagaa gttgtaatgt gatgaaaagt cgctcttgtt
    10081 ctggaactgg gccagttttt tcgagcaaaa tatcggtgat gtggtattct cgcgtgtctg
    10141 aaagtgattt ctcgtcaata tgaaaagcag tgtcgattaa gcgccggtct ctgattctta
    10201 agaacatcac ggatagcaaa tagggtaata attcgatttg ctcataggtg aattttattt
    10261 gcatcatcgc ttctgcttct tcgagtgtgc ggcgaatttc cattagttgg actttttcaa
    10321 ttcctgaata cgataggaaa tagtgctctc ctcggaacat ctctttcaca ctacttacaa
    10381 cttgtgtcag aaccttgcga agttcccatt cactccctgc taactgataa cccgatgctc
    10441 tactataagt gacagttgtt tctttaggaa gtaatttttg cgctactttt aaatcacgaa
    10501 gaatggtgtt tttgcttact tgaatcttcg ttgtaaaatg ggcgagggat agttcttctt
    10561 tggctgttaa aagcattagc aaaattaaat tggcacgttc attttcagaa ggtaagtatt
    10621 ctacgctcgg atctcgagtt tctttctcag aaaatagcgc tgtaagctcg ggttctaata
    10681 taaatcggcc gtttttggaa cgctttactt ctggataatt tttccacttg agccattcgt
    10741 ttactttctg aaaactatag ctgatttggt aacgcgataa tttatacttt acttcgagtt
    10801 gtttatttgt aatgttcgga ttttttataa cttcttgaaa tagtgtttta cttctgttat
    10861 ccagatacat gcgtctcccc ctttgatagc ctaattatag catagggttt ggcgcttaag
    10921 aatgcgcttt catcacaagt tttctccaca cacttccaca acatgagaag gagattgtta
    10981 cttttcgtac aatgtagcat cttcgttaaa gacacgaatt gcttctactg ctaaaacttt
    11041 gttggtcatt tgcgaataaa tttcataagg aatagttacc gtatctgcgc cactttcata
    11101 agcttgcatt acttgcccgc tatgtttaaa gctcgctgcc ataatttgtg ttttaagtgc
    11161 ctttttatca aaaaagtgac gcatcccagc aatttcttta aaaggatcga tgttcgctgc
    11221 gctcatccta ttcacatatg gggcaacaaa atctgcacca gccaaggcag ccgcgattgc
    11281 ttgatcagcc gaataaatag cagtccctaa gatttgaatg gttttatcct cttttttgag
    11341 tgtatcaatc acattaatac cagcctcatg tgccggaatc ttaatagcta ttttttcttt
    11401 cccaaacatc gctagtaaca tgcgcgcatc tgccaaaatt tcctcatagc taaaaccaac
    11461 tgtttgtaca aaaacttgtt tatccgtaag ttctaaaata cgattaatcg ctgtttgtcg
    11521 attgcatttt tcttttacta aaatggttgg gttcgttgta attcctttaa aaatggagct
    11581 ggcttgaatt tttttcacgt cttctaaatt agctgaatct aaatgcattt tccctcacct
    11641 ttcttggata atttctctga gtggcgccaa tttttctgta taactacctg ccttgtcgtt
    11701 aaataatgcg gctgttccaa cgacatagac atctgcgcca attggttcaa gcaaccgaac
    11761 tgtttcttca aaaatattac cgtctacttc aattaatggt ttattggtgt gactttcaag
    11821 ctctctttga agtttcttga ttttttctag gacatgatgc tgaaattttt gtccggcgaa
    11881 tcctgggtta acggtcatca ttaaaaccat atcgacttta tctaaaaatg gataaatctg
    11941 ttcaatctct gtatccgggc tgatggcgat ggacggtttg attcctagcg cacgaatatg
    12001 ctttatagtc gcatcgacat caggtgaagc ttctacgtgg aaagacatat aagccggctt
    12061 tatcgccgca tacaaatcca caaatttatc agggttcact gtagctaagt ggatatctag
    12121 tagcatatct gtattgtttt ttatatcttg aaggacatag gcgcccattg ctgcattttc
    12181 tacaaaaaca ccatccatca catcacaatg gagcattttt acatttgctt gttcgagtgc
    12241 gcgaagttcg tcagcgagat gaagcgagtc tgaacacata atggaagccg caatcatttt
    12301 catttatctt cctccggttc ctcaagctcc gccaatttcg cgagccttgt attatgtctt
    12361 ccaccttcaa attctgccgc aagccacgta tcaagtaaga gtaacgccag actatcgccc
    12421 agaacacgtt caccaagaca aagaacatta ctattattat gtcgcctcgt catcattgct
    12481 gaaaaagcat ctgaaacaac agcagcacga acacctttta ttttgttggc tgccatagac
    12541 attccaatcc ctgttccgca acagagcaca cctaaactgt tttcggttgc aacaaagtgt
    12601 cctactttag cggcatactc tggaaaatcc acgctttcta atgaataaca accaaaatct
    12661 tttactgtgt agccgctttc aattaaatgc gcgcggattt tttctttcaa ctgaaatccg
    12721 ccatggtcag ctgcaattgc aatttccatg ttatcctctc ctttctcacc ttgattgtag
    12781 caccggcctt cctcaaactg ttagaactgt tcggcaccat ttttctctac tcgaatccgc
    12841 aagatggtaa attagctcta tcaacaaaaa aaggctgaaa aagcaatgag ctctttcaac
    12901 cttctatgac ttatatcagc ctcttaattc ggcttggatt tcttttagtt ttttaggagt
    12961 tacgtcgtct ccaagtggat caatgattgt tacgtgatgt aagttatctt gaacagttcc
    13021 tcgaattttt ttcaaatatt cttgacgaag ggcagcttgt ctttcttttt caaaagcagt
    13081 taatccttca cttttttgtt ttgcagcaag ttcattaata ttttttaata acaatttcat
    13141 gctatccctc ctatcattat ctagttactt ttaataagta actaaccaaa ttataatata
    13201 aaggtcaaca aaagtcaaac ttctttttcg agcagttttt caggatcgcg tacttttgtt
    13261 tttttgcgtt cataaataag atccattaat gcgcccgaac caagtaggac gccaataata
    13321 ataaaaccga agccaactag ctgggggatt ttaattgctt ctccaaggaa aagtaatgcg
    13381 ccaattagtg aaaataatgg attgaaattc ataaaaatag ccgagcgtga cggcccaatt
    13441 ttcccaaccg cataattata aacgaaattg ccaaatgccg ttgcaactac agctgaaaca
    13501 acaaacaaga gccacagttt ccatgaatga accgccacta attctgacat gccacccggc
    13561 tccatgaagc gacttaaacc aaacaacata accgaaccaa gaaatagcat atatccagtc
    13621 atcagccccg tgtccattga tccagcgagc tttttaataa taataaaact aaatgcctga
    13681 gaagccatcg cgataaagat gtcgatatct cccagtgaaa tcccgcttat ccccgtccca
    13741 tttgaaagaa caaccaaact cacgccaaaa atccctgcta aaaagccgag cgcacgccaa
    13801 gctccaattc gttcacggag aaaaaccaca gaaaaaatcg ccaccacaat cggcgcagaa
    13861 ccaagaataa gcccagcatt cgtcccagtc gtcagcttca acccgttcga caagaaaaaa
    13921 tgatgaataa caatattaaa aatactcgcg agaaaaatta aaccaaattc ccattttgta
    13981 ggcagacgta atttttttgt gataaataaa ataataataa cggttatagc tgcggtgaaa
    14041 attcgaaaag atgtcatcgt aacagtcgga aaatagctaa ctaatacttt cgtcatcgtg
    14101 acattaaaac cccaactcgc catcactgca attaataaaa aataaagtcc tatcggtgct
    14161 ttctctttct gcaaaacaaa cactcctttt ttatagaaaa atgcccctta aattacttta
    14221 aggggcattt catagcgtca tcttccgcag ccttccacaa agctataacg cggaaaatgg
    14281 ggcagtgata cttaagtcac tgcttgtagg ctcatcgcat agacccaact atagcatgga
    14341 taattttttc tgtaaagcgt tattttgtaa attctaacca agtagaggca attgcttcat
    14401 gtcctgcttt ggtcgggtgc accccgtcct cagctaaaaa ggtcggccca tgtttgatag
    14461 cgagggcgtt cattagccca tcaagcggaa taagcgttgc accaaattct gccgcaagtt
    14521 cgcgcacagc tccaattttt ggatccaaat caccacgcca ctctttccga tcttccggat
    14581 atggtaatac aaacggctcc atcaaaatga gttccgcatt tgtttctgtt ttaatccgat
    14641 tcaaaatcac acgatacact tctttaaacg ccgtcaccga agtatcttcc catctgctaa
    14701 aactaaacca cgtatcattt atcccaatca taatcgtaac tacatctggt tgaagtgaaa
    14761 ttgcatccgc ctcaatacga cgatgcaaat ccgccacacg gttcgcacta acgccacgat
    14821 ttataaccgt tacatcttct tgctcaagct ggtctgcaat tattttcaca taaccatgtc
    14881 ctaattcgcg gtcattttca aaatctcgcc ccgcatctgt cacactatca cctaaaaaaa
    14941 gcaacttctt catttagttc cgtctccttt aaaattcctg atgccttatt ataacaaaaa
    15001 aacttcaatt tagttgtatt cattttttgc atagcttatt tttttaggag agattatcca
    15061 aaattacaat tgtacagacc tcgcgatact acctatactt aaaagtgtta aaacttatta
    15121 aaaaaataat cggaggtaat ttatatgact gcaaaaataa cagaaaaaac gcttttcagc
    15181 ccttcttttg aatacgtgga taatggcatc gagcatggag tgctaagtcc attcgaaaca
    15241 aaagaaatca ttttagaaaa aggacaacaa attgctgaag gtttcaaacc actggattgt
    15301 tccattaaaa tgttaaaaga tgtaccagtt aagatgcgtg acggtataac catttatacc
    15361 gatatttatt taccaataac agaagaaaaa gttcctactc ttatcgcctg gagcccttat
    15421 ggaaaaagtg ctggaacagc tcctcgatac aaaaatctat ttaatatgct aggaatgggg
    15481 aatgcctgga attctggcct tactaaattt gaagcacctg atccagcata ctggtgcgca
    15541 catggatacg ctgtctgtaa tcctgacatg cgtggcattg ctcatagtga gggtaatact
    15601 acaatgattg gctctcaaga agctgaagat ggctatgatt taattgaatg gttagctaag
    15661 caatcttgga gtaatggaaa aacagctcta acaggaacat cttatttagc cttttcccag
    15721 tggtatattg cagctgagca gccccctcac ctaacatgta tcaatcctac tgaaggatta
    15781 gcagatggtt atcgtgactt agcttttatt ggaggcattc cagatcctaa ttttattgag
    15841 cgtttgcaaa tcaaccatgt cagtgctaaa aattcgcaaa gagaagattt aacaaaggaa
    15901 atggaagcat atcctttagc tgatagtgct atttggaaag acaaagttgc agatccaagt
    15961 aaaattacaa taccagcttt tgttattgca agttattcta atacgcttca cacaatgggt
    16021 acatttcgtt cttggcgttc acttggttct aaagaaaaat ggcttcgtat tcatgatcgc
    16081 caagaatggc catattacta tgacgaaaat aacgtagaag aattgcgacg cttttttgat
    16141 tattatttac ttggcaagga aaataattgg acagatacac caactgtgcg ctatgcatta
    16201 attgactttc aaggtggcaa tcaaactgac ttaccatccg aagtttttcc acctaccaat
    16261 agtgaaaaca aacgttatta tatgaatggc ctattacgta ctttacaaga aacacctact
    16321 tcagatgatt ttaaagtatc ctatactact gaaaacttgc cagggagagc atcgttccaa
    16381 atgacgtttg acaaagaaac gcattttgtt ggttatccaa aagcaaaatt atttatggaa
    16441 gtagatggat acgatgactt ggatgttttt gtttggcttc aaaagctaga taaattcggc
    16501 aacgtactaa gtgaatttgt cgtgccaaat cacggggctg cacttcagga tttcacacaa
    16561 gaaggggcat ctgctttacg ctataaaggc gcttggggaa gacttcgcgc atccatgcga
    16621 caactagatt ctcaagtttc aacagatgaa attcctgctt atagctttga caaagtagaa
    16681 aaactctctt ccggagaaat tgtagaacta gacattattt tgagtcccat tggtctaact
    16741 tataaagcag gtgaaacact cagagtagtc gtgagtagca aagatgaact tggctcagta
    16801 atgccaggaa cgcccggatg cacacctaat aataaaggta tgcatatcct tcatacgagt
    16861 aaagagcacc catcctatat tcagctacca ataatcaaca aatagaaaag cttgtcaatg
    16921 gagtctaata actttatact aaagctacta tttacaatct ttcattgaat ggagcaatta
    16981 tgaagttatc caatttgaaa tactttgttg atgtggctat ggaaggaagt tttacccgag
    17041 catctgaaaa attatttatt tcacagccta cccttagtag acgaataaaa gaattagaaa
    17101 cagaattagg tgtagaactg tttattagga atcgtcattc gctggagtta tcaagtgcag
    17161 gtcaacaatt tttaatagaa gtaaatgata ttttaaatcg agtcaacaag ctatcccata
    17221 tgtttgataa tcaaaaaaca gcagatgaag ctggacaatt attaaagatt ggttatctct
    17281 cgaatttcaa tatgaacgca atgtatgagc tgctcgaatc attcaagcaa agtcatccac
    17341 atgttcaatt ctcattaaaa ccggatacac caatgaattt agctgaaggt ctttctaatg
    17401 ggcaatatga tttagttttt aatttatccg cttatttcca gccgaacatg tctatagaag
    17461 aagtattatt tataaaaaat catttgcaaa ttgctatacc cgcggaccat cgattccgga
    17521 aaaagaaaaa agtatatttt aatgatttga agcaagaaat agttattttg ctcgaaagaa
    17581 aacagtctcc catcattgta gactatgttg ttagtcaatg tactaaacat ggttttaatt
    17641 taaaagcgaa ttcgtatgta aaagatctgg atgaaggact agcaatgaca tctgttggag
    17701 aaggattagc ctttttgtat tccggcatga atgatggaac attagaagat aagtacaata
    17761 ttaaaattat ggatattcaa gaagaacgga atgaccaaaa tattgtcgca gccattaata
    17821 aacagagcga aattacactg cttcaagaat tattttcgtt tata
//
LOCUS       DASEAA010000040        17438 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.040, whole genome shotgun sequence.
ACCESSION   DASEAA010000040 DASEAA010000000
VERSION     DASEAA010000040.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17438
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.040"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            126..506
                     /locus_tag="U0342_001170"
     CDS             126..506
                     /locus_tag="U0342_001170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464429.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM2422522.1"
                     /translation="MDLVKNGKVLELVHPNGNWTLIKEEGFSPVQITVAAVAACSGYV
                     YQTLLEKKRIEINDLSIHTDYEQDQESAVHVLTKINVTFTVDLVDKSNEAKAEKAVHL
                     VKDACPVAKSLDPSIEINEMVVFK"
     gene            621..1295
                     /locus_tag="U0342_001171"
     CDS             621..1295
                     /locus_tag="U0342_001171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI/OmpD-associated family protein"
                     /protein_id="HEM2422523.1"
                     /translation="MAEKTIVEKLQLTKYKEAVILNQPNGADCFQNLANYEEKLADKQ
                     YDLIFDFVETLEELITFVQKVIAENKLAANGYLFFAYPKKGNKKFATYVHRDELMPAL
                     KTDEEGYVDGSTLKFTRMVALDETYTVVGLKEAAKLKAKGVKKNNPSADEYADHVPLV
                     AEFLADKGDLQAFYNNLATGYQRVWARYIYSAKQPATQEKRRLEMVDILSQGYKTKDL
                     YRQGKK"
     gene            1426..1923
                     /locus_tag="U0342_001172"
     CDS             1426..1923
                     /locus_tag="U0342_001172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine phosphatase family protein"
                     /protein_id="HEM2422524.1"
                     /translation="MANYINKERRQIDFDPFDLRIIAVPEVVAVQFKPRSEHTLLIRI
                     ADVGATYQPLKNESLFEAILPVHFNDINEEDDYWGLSDKEQAEMKLFNEVHRDLIYNF
                     VDEHPDFTQIVVHCHAGVSRSSAVAMAIAEHLRDTDTYEKLQVIKRYLPNPRVLAIMR
                     GEAYL"
     gene            1959..3308
                     /gene="gorA"
                     /locus_tag="U0342_001173"
     CDS             1959..3308
                     /gene="gorA"
                     /locus_tag="U0342_001173"
                     /EC_number="1.8.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutathione-disulfide reductase"
                     /protein_id="HEM2422525.1"
                     /translation="MEKHYDYIAIGGGSGGIASINRAAMHGAKCALIEPKFLGGTCVN
                     VGCVPKKVMWYGAQIKEAMDLYADAYGYQVDASFNFQKLVENREAYIERIRGSYKNGL
                     DNNKVEWIKGYAEFVDEKTLRVNGELVTADHILIATGGEPALPSIPGAEFGITSDGFF
                     ALKELPKKVAVVGAGYIAVELAGVLQQLGSETHLFVRKHAPLRNFDPLLTDTLTEIIE
                     QSDMTLHKHAVPQKVEKNPDGSLTLSLEDGRTETVDTLIWAIGRKPVIQGLQIEKAGV
                     KLLESGHIAVDKFQNTNVAGIYAVGDVTGHYELTPVAIAAGRRLSERLFNNKKDAHLN
                     YENIPTVVFSHPAIGTVGLTEPEAIEKYGKENIKVYTSSFTSMYTAITDHREPCRMKL
                     ICEGKTERVIGLHGIGYGVDEMIQGFAVAINMGATKADFDNTVAIHPTGSEEFVTMK"
     gene            3337..4011
                     /locus_tag="U0342_001174"
     CDS             3337..4011
                     /locus_tag="U0342_001174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464433.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2422526.1"
                     /translation="MGKKLSLYFVRHGQTYLNKNLRMQGWADTPLTPEGIEIVKESGR
                     GLAETEFVAAYSSDLHRTIATAGHLLKENKHAFGLTLEPLSEFRETFFGSYEGEKGDV
                     AWNEIAHHMGYANQEDLFKNADVRETMNGTKAADPTGDAEDFMTFWTRVEQGFLHVIN
                     RHRETGGNVLIVAHGNTIRNIVHELEPSMDEAVILDNASVTVLAYENGLFKLERLNDT
                     SHFKKA"
     gene            complement(4054..5190)
                     /locus_tag="U0342_001175"
     CDS             complement(4054..5190)
                     /locus_tag="U0342_001175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464434.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2422527.1"
                     /translation="MKFSRFRDSKLFFWTIEILAVVAILFVLLQMKYIFSPIGIIVST
                     LFMPILVAGFLFYLFNPLVLFLEKRKVPRLLSVILIFIAFITLVVLAVMQLGPTLADQ
                     VAELAKAIPGYWQDFEKWLQDLSNNSALKDLDIKQELEKLNISLPKIMSVVVDGVASS
                     FGAIVSFVSSFVMILVTVPFIVFYMFKDGHKFVESSGRFFPAGIRSEAKQIIKEMNKT
                     ISTYISSQAIDCMFVGLFTFIGYLIIGQPYALLFGFIAGATNIIPYLGPFIGAAPAVI
                     VALFTSPVQALLVIVVVTIVQQIDSNLLSPYIMGKSLSIHPLTIIIILIVAGNLAGIF
                     GMILGVPLYAVVKTIIVNVNRLIKLRRGQLAIDNNLPDPDTPKE"
     gene            5331..5723
                     /locus_tag="U0342_001176"
     CDS             5331..5723
                     /locus_tag="U0342_001176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464435.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2422528.1"
                     /translation="MLLAIDLQSDEPIYTQICNQIIEGMAKRELLPGDKLPSVRSLGA
                     DIGINFHTVNKAYQILKQEGFIQIHRQKGVVIHPDGVAKADELFFAKLQTKLKPLIAE
                     SVVRGVTEEKWLEVSKAIFDEMHGRRVE"
     gene            5726..6829
                     /locus_tag="U0342_001177"
     CDS             5726..6829
                     /locus_tag="U0342_001177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464436.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1648 domain-containing protein"
                     /protein_id="HEM2422529.1"
                     /translation="MEIIIYIFVSIAIISLQAITPFVIRKSECFGVNVGERANRNAEL
                     TRLKKQYVGQVVLWTSFVAIIGIALIQGFHSSENMQAGIFIASMFGQLIVSFIIYYRF
                     HHTTLQWKRDKIEAGEISTNSIIMVDTSFHRRKMVISYTWFVVPLLIFIITLAITVVF
                     YPVAPADFPIHFDMSGAVTDTVAKSPRVVLLLPMMQLGMIALFIFINFVIARSKQSVE
                     NENPTDSLKRGLLFRQISSKAMLIMCTIMVIDFLIMQVVTLLALPAEWMMITMIISVV
                     LILFGTVLLAVKVGQGGSRLKFADQPDGVNKPIRDDDSFWKAGVIYFNRNDPALFVEK
                     RFGIGWTINTARPVAWLSFIIIIAVIILISILF"
     gene            6912..7415
                     /locus_tag="U0342_001178"
     CDS             6912..7415
                     /locus_tag="U0342_001178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464437.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="effector binding domain-containing protein"
                     /protein_id="HEM2422530.1"
                     /translation="MAIRLKRLEEWEGFTGIALVREGLKTEALHTEIKTAFKEMLQLA
                     RELDDFSKQKTFYGISVHNIEDGITHYSVIPVEQKYPHLQEPLEWIEVPAHTYFVAEH
                     IQDTDISESYEEIARAIQEKNYKPYITANNPVFDPLPFKLEVYTKQGSDGANIEIRIP
                     VVKELHT"
     gene            7529..8341
                     /locus_tag="U0342_001179"
     CDS             7529..8341
                     /locus_tag="U0342_001179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464438.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM2422531.1"
                     /translation="MGYYSPQEVTEITIEKGTQKANSSTLTLVLLGFLGGAFISLGYL
                     LYIRAVGTMPHEWGSFATLIGASLFPVGLVCILLGGGELITGNMMAVAIAWYDKKISF
                     QQLLRNWAIVSVMNLVGAFFVAYFFGHFVGLTEGDFLPKTLATAGAKINDPFWVAFVS
                     GIGCNWFVGIAVWLCYAAKDFAGKILGIWFPVMAFVAIGFQHVVANMFIIPAAIFAGY
                     YSWADFIWNIIPVYLGNVVGGAVFVSLFYFIAYKKNAPKKVKEEIHQPIEES"
     gene            8566..10032
                     /locus_tag="U0342_001180"
     CDS             8566..10032
                     /locus_tag="U0342_001180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464439.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent succinate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEM2422532.1"
                     /translation="MSIKETALPKVQTKLFINGKWTDGDNKETKDIVNPANGEVIAKI
                     AQAGPNETKKAIKAAKEAFPDWAKMELADRVKLLHKIADLMEEKADTLAKIMTLEQGK
                     PLKESKGEVLTGAENFRFAAEEARRLYGETIPAPNNHAFIVKKQPIGVVAAITPWNFP
                     GGMVTRKLAPALATGNTIVLKPSGDTPLSALAIFEIFEEAGLPKGVANIVMGSSKEIG
                     ETLTDSDDVRKLTFTGSTKVGQTLFKQSAETLKKISLELGGHAPFIVFDDANLDAAVN
                     DLVAAKFRNNGQVCVSPNRIFVAKEIKEKFTKALVAKVKQLKVGNGLDDVNVGPLIRE
                     DAIDKIDKQLKNATDKGAKVLTGGGRLTGSDYDKGNFYKPTVLDNVTREMDIFYEETF
                     GPVIPLITFETEDEAIEMANDSEFGLASYFYTKDLARVEKVGAALEYGMVGANEIVIS
                     NPETPFGGVKHSGFGRENGHYGMEEYIQVKFINLKYRD"
     gene            10176..10481
                     /locus_tag="U0342_001181"
     CDS             10176..10481
                     /locus_tag="U0342_001181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2422533.1"
                     /translation="MKNILLICGSGASSGFMAAAIRKAAKKRGEQVTVKAASESQIDE
                     RINEIDYLLIGPHLAYMLDDLKQKVADKNVLVSIIPQATYGTLNGEKALDLILTMEG"
     gene            10486..11754
                     /locus_tag="U0342_001182"
     CDS             10486..11754
                     /locus_tag="U0342_001182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464441.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2422534.1"
                     /translation="MNNKVMDFMTNKFAPKVNKVVKNPWVSAIQDAIMSALPLVFVGS
                     LVTIVSLLKNLFPGMPDFSMISNFSFGMFGLVVAFLIPYYLMEKKGNSSQKLISGATG
                     LVLFLMLLFPTISADGDAVFILSRFGATGMFLSITTGLFVGCVMNFAAKRSFFSEDTP
                     IPDFVVGWFNSLLPITFILIVGWLITVQFNIDFFEVIVAVFSPLASIVQSYPGFVLSV
                     FIPAFLYTFGISGWVMMPAIYPVYMAGLAENSQAVANGASASNIATQETVYALISIGG
                     VGTTLSLSIMMLILSKSLQLKAIGKAVIVPSIFNINEPLFFGAPIAFNPYLMIPTWIN
                     AFLVPSIAYFVMSMNLVSIPAQSFLLWYMPYPVTSYLATQDFRGVIACLAIIVITWLV
                     YLPFFKAYDNSLLKQEKLDAIETEKEMVTN"
     gene            11769..12119
                     /locus_tag="U0342_001183"
     CDS             11769..12119
                     /locus_tag="U0342_001183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464442.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2422535.1"
                     /translation="MSEQDYVEETDSLNELSMNILIHAGNARNYLVKGLNHLEELAFN
                     EAEEFIASAKKEIVIAHSLQTDTLQLEASGNQIRYSTLFCHAQDTLMTAKSEILIGEH
                     MLRLFKKMTELTKK"
     gene            12131..13582
                     /locus_tag="U0342_001184"
     CDS             12131..13582
                     /locus_tag="U0342_001184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464443.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2422536.1"
                     /translation="MFENYQFPKDFLWGGAIAANQAEGAFKVDGKGISLADLHKYHKG
                     KTNDEISEEQHKGVSLADIKASMEDKVNYYPKRHGIDFYHTYPEDLALLAEMGFKTFR
                     TSLDWTRIFPTGEETEPNEAGLKYYDQLIDKIIELGMEPIITILHYETPVEIVLNHGG
                     WHNRKVIDLFEKYGKTVLDRYNKKVKYWIIINQINLIQFEPFNSTAIPYDAVDDYLSA
                     TYQAVHNQFVASAKIYEYGKALNPDLMIGTMLADCTAYPFSCDPDDIVLAMKRNRMEY
                     FFADVQFQGEYPQYALNYFDENNIHIEITEDDKAILQKNTMDYLALSYYYSQMVDSKK
                     NDLDPASITPNPHLKANPWGWAVDPKGLYNALSQYWDRYHKPIIIAENGFGMYDKLEN
                     GEIHDDYRIDYLSAHLKEMKRAMYDGVEIIAYCAWGPIDIVSCSSAQMEKRYGFIYVD
                     LDNEGNGTGKRIKKDSFSWYKKVIESNGEDLEA"
     gene            13655..15553
                     /locus_tag="U0342_001185"
     CDS             13655..15553
                     /locus_tag="U0342_001185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2422537.1"
                     /translation="MDTQKEILAYLHKQENKWVTSNELAAFCECTTRTIRNNISKINE
                     ATPNLIRSAKQGYQINQRIPFELQTESDVTERKSKLLLELIKNSTKGVDLFELADILY
                     ISEVTLKKDIQQLKNELKEADVQIVTSKDRIKLIGKERAKRKYMISLLYEEGGYRESI
                     KSRIQEMIEFVSIDKLQNIVKEVLTEESITTNQYSMMNIVLHYAISIVRIQQGNTLIE
                     TQKTLIRKHSKEYEISKKIAKILSEEYQIHFSEAETKQLGLLYVGLQNEQSANANHGE
                     LDQFVDKKIIEALKSVLANVEETYLIDLQNEQLFIKLAIHVQSLYYRSRYKAYTRNLS
                     LLDIKTSYPVTFDIAVYISSLLQEKLAIDFNEDEISFIALHIGSFLESENRDYIRLEI
                     GLLIEDYHDLRTNMLKKLRARFENEATIKLIENEDSEENFDIILTTNRDIALEKAGSI
                     FIHPLLTTKDIKKISNRIQTKKKILENHLRGQQIDRYIVRSLYANQIDPSELTPAKIR
                     EQMISKMEKQTFVTPEFKEKVEKRERMAPTSFPSGIAIPHSIKNDALQSGVSIMTLQE
                     PIYWNDVKIKIIALVAISKKDATEFNDFFEKFVEIVSEPINTKRLSMAESFEEFIQKL
                     KMMMEESE"
     gene            15846..17417
                     /gene="abc-f"
                     /locus_tag="U0342_001186"
     CDS             15846..17417
                     /gene="abc-f"
                     /locus_tag="U0342_001186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein"
                     /protein_id="HEM2422538.1"
                     /translation="MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTT
                     LMEVIAGAKEATSGTVTTQGKLAYIKQLSTDTSTKSGGEKTRKAIQHAMRQNPSVLLA
                     DEPTSNLDVESVKHLERQWSDFHGALIIISHDRTFLDALCTEIWEIKNQKIHVYKGNY
                     HAYLEQKQQQENQAELVYKEFKNKKQQLQASQTHHEIEAGRIVKPGKRLNNKEASAFK
                     AGKGTQQKKQHSTIKALEKRIERLGNVEKPHTTKPIKMITPDNRVIKKGNTILSVKET
                     TYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQENPNLLCNPQAKIAYF
                     DQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLL
                     LSMLLVSDANFLILDEPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLL
                     VIENNEMTFHRMTFAEYEESKAPSRITEEDKLILEMRMSEIAAKLMQPNLKPTEKAML
                     EQDYQEIITKRQQFS"
BASE COUNT         5981 a         3189 c         3504 g         4764 t
ORIGIN      
        1 caaaaagaat ccaagcaaaa cttggattct ttttttcgta caggaaattg gacagaactt
       61 tttatttgag ctataatctt attattcata taagaattgt aaggattaaa ttggaggaat
      121 gaatcatgga tttagtgaaa aatgggaaag tgttagaact tgtacatcca aatggcaact
      181 ggacattaat taaagaagaa ggtttttctc cagttcaaat aacagtggct gcggttgctg
      241 cttgtagcgg atatgtctat caaacattac ttgagaaaaa acgaattgag ataaatgatt
      301 taagcattca taccgattat gagcaagatc aagaaagtgc tgtgcatgtt ttaacgaaaa
      361 ttaatgttac ttttacggtg gatttagtag ataaaagcaa tgaagcgaaa gcggaaaaag
      421 cggtgcattt agtgaaagat gcttgcccgg ttgcgaaaag tttagatccg tcgattgaaa
      481 ttaacgagat ggttgttttt aaataaaatg atttatagac caagccgtgg tgtttggtct
      541 tttttctgtt tagtttggct tgataactta aagggaaggc tatatactga aaccaaacaa
      601 tacaaacgag gtgctggaat atggcagaga aaacaatagt agaaaaatta caactgacta
      661 aatataaaga agcagttatc ctaaatcaac caaatggagc ggattgtttc caaaatctag
      721 caaattacga agaaaaacta gcagacaaac aatacgattt aattttcgat tttgtggaaa
      781 cgctagaaga attaattacg ttcgtgcaaa aagttattgc tgaaaataaa cttgctgcga
      841 atggttattt atttttcgcc tatcctaaaa aaggcaataa aaagttcgct acatatgtac
      901 accgcgatga actcatgcca gcgcttaaaa ccgatgaaga aggctacgtc gacggtagca
      961 cactcaaatt cacgcgaatg gtcgcgctcg atgaaacgta cacggtagtt ggtctaaaag
     1021 aagcagcaaa actaaaagcg aagggcgtta agaaaaataa cccttccgca gatgaatacg
     1081 ccgaccatgt acctctagtc gccgaatttc tagcagacaa aggtgattta caagccttct
     1141 acaacaatct agcaacagga taccagcggg tttgggcgcg ctatatttac tctgccaaac
     1201 aaccagcgac acaagaaaaa agacgtttag agatggttga tattttgagc caaggttata
     1261 aaacgaaaga tctttaccga caagggaaaa agtaaccaaa taattttatt tggttatttt
     1321 tgcgtttgaa actgcttctt tatgtaaaaa tgtctaggcg tgatagaata gaagaggaat
     1381 aagacgaagg aaaatcttgt tgcactggaa aaggggacat gcaggatggc gaattatatt
     1441 aacaaagaaa ggcgccaaat tgattttgat ccatttgatt tacggataat tgccgtacca
     1501 gaagtagtag cggtgcagtt taagccgcgc tcagagcata ctttacttat tcgtattgcg
     1561 gatgtcggcg caacctatca gccactcaaa aacgaatcac tttttgaagc tattttgccc
     1621 gttcacttta atgatattaa cgaagaagat gattactggg ggcttagtga caaagagcaa
     1681 gcggagatga aactatttaa cgaggtacat cgcgatttga tttataattt tgtggatgag
     1741 cacccagatt ttacgcagat tgttgtccat tgtcacgctg gggtcagccg aagtagcgct
     1801 gttgctatgg cgattgcgga acatttacgc gacacggaca cgtacgaaaa acttcaagtg
     1861 ataaaacgat acttaccaaa tccgcgggtt cttgcgatta tgcggggcga agcgtattta
     1921 taaaaacgaa aacgaagaaa tgttaggaga gattttgtat ggaaaagcat tatgattata
     1981 ttgcgattgg cggcggaagt ggcggaattg cttcgattaa tcgcgcagcc atgcacggag
     2041 caaaatgtgc attaattgaa ccaaaatttt taggtggaac ttgtgtaaat gttggttgtg
     2101 ttccgaaaaa agtcatgtgg tatggcgcac aaattaaaga agcgatggat ttatacgcag
     2161 atgcgtatgg ttaccaagtg gacgcgagct tcaacttcca aaaactagtc gaaaatcgag
     2221 aagcgtacat tgaacgaatt cgaggttctt acaaaaatgg gctggataat aataaagtag
     2281 aatggattaa aggttatgcc gaatttgtcg atgaaaaaac attgcgcgta aacggcgaac
     2341 tagtgacagc agatcatatt ttaattgcaa caggcggcga accagcgctt ccttccattc
     2401 cgggcgcaga atttggcatc acctcagatg gcttttttgc attaaaagaa ctacctaaaa
     2461 aagtggcggt tgttggcgcg ggatacattg cggttgaact agctggtgta ttacaacaac
     2521 ttggctcaga aacgcattta tttgtacgga aacatgcgcc actccgaaat ttcgatccac
     2581 ttttaacaga tacactaacc gaaattatcg agcaatcgga tatgacgttg cataaacacg
     2641 ccgttccgca aaaagtcgaa aaaaatccag atggcagttt gacgttgagc ttagaggatg
     2701 gccgcacaga aaccgttgat acgcttattt gggcgatcgg acgtaaacct gtcatccaag
     2761 gtcttcaaat cgaaaaagcg ggcgtaaaac ttctagaaag cggacatatc gccgtagata
     2821 aattccaaaa caccaatgta gcggggattt atgcagttgg cgatgtaacg ggtcattatg
     2881 aattaactcc agttgcaatt gcagcggggc gccgtttatc agaacgtctt ttcaacaaca
     2941 aaaaagatgc acatttaaac tatgaaaata tcccaaccgt tgtatttagc catccagcta
     3001 ttggaacggt cggtttaaca gaaccagaag caatcgaaaa atatggcaaa gaaaatatca
     3061 aagtgtacac ttcaagcttt acctcaatgt atacagccat cacagaccac cgcgaacctt
     3121 gccgaatgaa attaatttgc gaagggaaaa cagagcgtgt catcggcttg cacgggattg
     3181 gttacggtgt ggacgagatg attcaaggat tcgctgttgc gattaatatg ggcgcaacaa
     3241 aagccgattt cgacaatacg gttgcgattc acccaacagg atccgaagaa tttgttacaa
     3301 tgaaatagaa aacaacgatg gaggaggaag tacgtaatgg gaaaaaaatt atcactttat
     3361 tttgtaagac atggtcaaac ctacttaaat aaaaacttgc gcatgcaagg atgggctgat
     3421 acgccactaa caccagaagg aattgaaata gtcaaagaaa gtggtcgcgg acttgcggaa
     3481 acagaattcg ttgcagcgta ttcaagcgac ttacaccgta cgattgcaac agcagggcat
     3541 ttattaaaag aaaataaaca cgcatttggt ttaacactag aaccattaag tgaatttcgg
     3601 gaaactttct ttggctccta cgaaggtgaa aaaggcgatg ttgcctggaa cgaaattgcg
     3661 catcatatgg gttatgcgaa tcaagaagac ctatttaaaa atgccgatgt acgagaaaca
     3721 atgaatggta caaaagcagc tgacccaaca ggagatgcgg aagatttcat gacattctgg
     3781 acacgtgtag aacaaggttt cttgcatgtt atcaatcgtc atcgcgaaac tggtggtaac
     3841 gttcttatcg tcgctcacgg aaatactatt cgtaacatcg tccacgaact cgaaccatcc
     3901 atggacgaag cggttatttt agataacgcg agtgtcaccg tactagctta cgaaaacggc
     3961 ttattcaaat tagaacgttt aaatgacact tcccatttta aaaaagcata gaaaaaacga
     4021 gctttaggaa ctagtttccc aaagctcgtt tttttattct ttcggtgtat ccggatcagg
     4081 aagattatta tcaatcgcca gctgacctcg ccgcaattta attaaacgat taacattcac
     4141 aataattgtt ttcacaaccg cataaagtgg aacacctaaa atcattccaa agattcctgc
     4201 taagtttcca gcaacaatca agataatgat aatagttagt gggtgaatcg atagtgattt
     4261 acccataata tatggagaaa gtaagttaga gtcaatttgt tgcacaatcg ttacgacaac
     4321 aataacgagc agtgcttgga ctggagaagt aaatagcgcc acgataactg cgggagctgc
     4381 tccaatgaat ggtccaagat aaggaataat attcgttgca cctgcaataa aaccaaacag
     4441 aagcgcatac ggttgaccaa taattaaata accaatgaaa gtaaataaac caacaaacat
     4501 acaatcaatc gcttgtgaac taatataagt agaaatggtt ttattcattt ctttaataat
     4561 ttgttttgct tcagaacgaa tacctgccgg gaaaaatctt ccagaggact caacgaactt
     4621 atgaccatct ttaaacatat aaaagacgat aaatggtaca gttacaagaa tcataacaaa
     4681 actagagaca aaggagacaa tggctccaaa actagaagct accccgtcaa cgaccacaga
     4741 catgattttt ggtaaggaaa tgttgagctt ctcaagttct tgttttatgt ctaaatcttt
     4801 tagtgcagaa ttattcgaga gatcttgcag ccatttttca aaatcttgcc agtaacctgg
     4861 tattgctttt gcgagttcag ctacttggtc agcaagcgtt ggaccgagtt gcattactgc
     4921 aagaacaaca agcgtgataa aggcaataaa aattaaaata acactcaaaa gtcgaggtac
     4981 ttttcttttt tctaaaaata atacgagcgg gttaaataaa tagaatagga accctgcgac
     5041 caaaatcggc ataaacaatg tagaaactat gatgccgatt ggtgaaaata tgtacttcat
     5101 ttgcaataga acgaacaaaa tagctacaac cgctaaaatt tcaattgtcc aaaaaaataa
     5161 tttactatct cgaaatcgtg aaaatttcaa attctcccct tctttctaaa accttattga
     5221 taaattttat agtaccatta actgctttaa atagccactg aattactgct attgacgcat
     5281 aagtatatgt gttatacaat gtatataaca gttaaaggag aggtgtttct atgctacttg
     5341 cgattgatct tcaatcagac gagccgattt atacacaaat atgcaatcaa ataattgaag
     5401 gtatggcgaa acgggaactt ttaccagggg acaaattacc ttctgttcgg agtcttggcg
     5461 cagatattgg tattaatttt catacagtaa acaaggccta ccaaatttta aaacaagaag
     5521 gatttattca aatacatcgt caaaagggag tagttattca tccggatggc gtagctaagg
     5581 cagatgagct attttttgct aaattacaaa cgaagctaaa accactcatc gcggaatcgg
     5641 ttgtgcgcgg tgttaccgaa gagaagtggc tcgaagtaag taaggctatt tttgacgaaa
     5701 tgcatggacg gagagtggag tagaaatgga aatcatcatt tatatttttg ttagtattgc
     5761 tatcatttca ctgcaagcaa taaccccttt tgtaataaga aaatcagaat gtttcggagt
     5821 aaatgtaggc gaacgcgcta accgaaatgc ggaattaacg cggctaaaaa aacaatatgt
     5881 cgggcaagtg gttttgtgga cctctttcgt tgctattatc ggaatcgcat taattcaagg
     5941 ctttcattcg agtgagaaca tgcaagcggg tatttttatt gcttcgatgt ttggacaatt
     6001 aatcgtttct tttattattt attatcgctt tcaccacaca actttacagt ggaaaagaga
     6061 taaaatagag gcgggagaaa tttcgactaa ttctatcatc atggtagata ctagttttca
     6121 tcgcagaaaa atggttatct cgtatacatg gtttgtcgtg ccactgctta tcttcattat
     6181 tacacttgcg attacggtcg ttttttatcc agtagctcct gctgactttc caatccattt
     6241 tgatatgagt ggggcagtga cggatacggt tgccaaatca cctagagtcg tattgctatt
     6301 accgatgatg cagctaggaa tgattgcgtt atttatcttt attaactttg ttattgctag
     6361 gagcaaacag tccgtagaga acgaaaaccc tactgattca ttaaaaaggg gactcctatt
     6421 tagacagatt tctagtaaag caatgttaat tatgtgtacg attatggtaa ttgattttct
     6481 catcatgcaa gtagtcacat tactagcact tccagctgaa tggatgatga taacaatgat
     6541 aatttctgtt gttttgattc tgtttggaac cgtccttctt gctgtaaaag tagggcaagg
     6601 cggaagcaga cttaaatttg ctgaccaacc tgatggtgtc aataagccaa ttcgggatga
     6661 tgattctttt tggaaagcag gggttattta ttttaatcga aatgatccag ctttatttgt
     6721 agaaaaacgc tttgggattg gttggacgat taacacagct cgccctgttg cttggttatc
     6781 ttttatcatt attatcgctg ttattattct cattagcatc ttgttttaac ttgctctcag
     6841 acgggtattt accatatggt atacggataa attagcttgt gtgagatgct tttgtgaagg
     6901 agtagataat catggcgatt agattaaagc gactggagga atgggaagga ttcactggta
     6961 ttgcgctcgt tcgagaaggt cttaaaacag aagcacttca tacagaaata aaaacagcct
     7021 tcaaagaaat gcttcaactt gcgcgagaac tagatgattt ttccaaacaa aaaacgtttt
     7081 atggtatttc tgtccataat atagaagacg gaattactca ttattcggta attccagtgg
     7141 aacaaaaata tcctcattta caagaaccgc ttgagtggat tgaagttccg gctcatacgt
     7201 attttgtggc tgagcatatt caggatacag acataagtga aagttatgaa gagattgcca
     7261 gagccattca agaaaaaaat tacaaaccat atattacagc gaacaacccc gtttttgacc
     7321 cactaccatt caaattggaa gtgtatacga aacaaggaag cgacggagca aatattgaaa
     7381 taaggattcc tgttgtaaaa gaattgcata cgtaagaaga agcctgggac ttttgttctg
     7441 ggctttttta tactagcaag ctgtttttga gtgtgctata ataaaaacgc tattttgtga
     7501 ttattttaac aagaaggaag ggattcatgt gggatattat agcccgcagg aagtaacaga
     7561 gattacgatt gaaaaaggga cccaaaaagc aaattcaagt acgttaacgc ttgtgttgtt
     7621 aggcttttta ggtggggcct ttatatctct tggttactta ttatacatac gtgcagtagg
     7681 aacaatgcct cacgaatggg gaagctttgc aacgcttatc ggcgccagtc tttttccggt
     7741 tggcctcgtt tgtattttgc taggtggagg agaattaatt accggcaaca tgatggctgt
     7801 cgcgattgct tggtacgaca aaaagatttc cttccaacaa ttacttagaa actgggcgat
     7861 tgtgtctgtc atgaacttag tgggcgcatt ttttgtcgct tacttcttcg gacatttcgt
     7921 tggcttaaca gaaggcgatt tcttaccaaa aacgctagct acagctggcg caaaaattaa
     7981 cgatcctttc tgggttgctt ttgtttccgg aattggttgt aactggtttg ttgggattgc
     8041 ggtttggctt tgctacgcgg ctaaagattt cgcaggaaaa atccttggta tttggttccc
     8101 ggttatggca tttgttgcta tcggatttca gcacgttgtc gccaacatgt ttattatccc
     8161 agctgcgatt ttcgctggtt actattcatg ggcggatttc atttggaaca tcatcccagt
     8221 ttacttagga aatgtagtcg gtggagcagt ttttgttagc ttattctact tcattgctta
     8281 taagaaaaac gcacctaaaa aagtaaaaga agaaatacac caaccaattg aagaaagtta
     8341 agaccgaaaa agctagttac attcgatgta gctagctttt tttgaaaaaa attaaagttt
     8401 tttagagact gttctcgttc ccgccatgtt gggatagaat gactttttcc aaaaaccatt
     8461 ttgccacttg aaaaagaaaa tcctgattaa atttttcgat ttgtggaaaa cactattata
     8521 agcaacgaga gcacgtgcag aaaaattttt tgaggagtgg tatttttgag tattaaagaa
     8581 acagccttac caaaagttca aacaaaatta tttattaatg gaaaatggac ggatggagat
     8641 aataaagaaa caaaagatat tgtaaaccca gcaaatggag aagttattgc caaaatcgct
     8701 caagctggac caaacgaaac caaaaaagcc attaaagctg caaaagaagc atttcctgat
     8761 tgggcaaaaa tggaactagc tgatcgcgtc aaattattac acaaaattgc cgatttaatg
     8821 gaagaaaaag cagatacact agcaaaaatt atgacgcttg aacaaggtaa accgctaaaa
     8881 gaatcaaaag gagaagtcct aactggcgca gaaaacttcc gattcgctgc agaagaagca
     8941 agaagattat atggggaaac tatcccagcg ccaaacaatc acgcgtttat cgtcaaaaaa
     9001 caaccaattg gtgtagttgc ggccattact ccgtggaatt tcccaggtgg tatggtgaca
     9061 cgaaaacttg ctccagcgct tgcaaccgga aatacaatcg tattaaaacc ttccggagat
     9121 acgccgcttt cagccctagc tatctttgaa atttttgaag aagccggctt gccaaaaggt
     9181 gttgccaata tcgttatggg tagctccaaa gaaatcggcg aaacattaac tgacagtgat
     9241 gatgttcgta aactaacttt caccggctcc acgaaagtcg gtcaaacact attcaaacaa
     9301 tcagccgaaa cactgaaaaa aatctcgctc gaacttggtg gacatgcgcc atttatcgta
     9361 tttgatgatg caaacctgga tgctgctgta aatgatttag ttgccgcaaa attccgcaat
     9421 aacggtcaag tatgtgtatc gccaaaccga atttttgttg ccaaagaaat taaagaaaaa
     9481 ttcactaagg cgctagttgc taaagtaaaa caactaaaag taggtaacgg tttagatgat
     9541 gtgaatgttg gtccacttat ccgtgaagat gcgattgaca aaatcgacaa acaacttaaa
     9601 aatgccacag ataaaggtgc caaagtccta actggcggcg gtcgtttaac aggttccgac
     9661 tatgacaaag gcaacttcta caaaccaact gtcttagata acgttactcg tgaaatggac
     9721 attttttatg aggaaacatt tggtccagta atcccgctta tcacatttga aacggaagac
     9781 gaagcaatcg aaatggcgaa tgacagtgaa ttcggtcttg cttcttactt ctacactaaa
     9841 gatttagcac gcgtagaaaa agtgggagca gcactagaat acggaatggt cggagcaaat
     9901 gaaattgtca tctctaatcc ggaaactcca tttggcggcg ttaaacattc tggtttcggt
     9961 cgcgaaaatg gccactacgg aatggaagaa tacatccaag tgaaattcat taacttaaaa
    10021 tatcgtgact aacacaagct attaagaaac tcctttgctt caagcaaagg ggtttctttt
    10081 ttatgcagtt tcctaccagt aggaaaaaaa catatttgta agcggattca gctgtttata
    10141 taataaaagt aagttaagga aagggaggat acaaaatgaa aaacatttta ctcatttgtg
    10201 ggtcaggagc ttcaagtgga ttcatggcag cagcaatcag aaaagcagca aaaaaacgtg
    10261 gagaacaagt gacggtgaaa gcagccagtg agtcacaaat agatgaaaga attaatgaaa
    10321 ttgattactt attaatcggg ccgcacttag cttatatgct ggatgactta aaacaaaaag
    10381 tagccgataa aaatgtttta gtatcaatta ttccgcaagc aacttatggc acacttaacg
    10441 gtgaaaaagc actcgatctc attttaacta tggagggata acacgatgaa caacaaagtg
    10501 atggatttta tgacaaataa atttgctccc aaagtaaata aagttgttaa aaatccttgg
    10561 gtatcagcaa ttcaagatgc aattatgtct gcgcttccgc tcgtttttgt cggttcttta
    10621 gtcaccatcg tttcactact taaaaattta tttccgggca tgcctgattt ttcgatgata
    10681 agtaattttt cgtttggcat gtttgggtta gtcgtggcct ttttaatccc atattatctg
    10741 atggagaaaa aaggaaatag cagccaaaaa ttaatttctg gcgcaactgg acttgttcta
    10801 tttttaatgc tactatttcc aactatttca gcagacgggg atgccgtttt cattttatct
    10861 agatttggag cgacagggat gttcttatcc attacaaccg gattatttgt tggttgtgtg
    10921 atgaactttg ctgcgaaacg atcatttttc agtgaagata caccgattcc ggattttgtc
    10981 gttggttggt tcaatagctt gctaccaatt acatttattc tgattgttgg ttggttaata
    11041 actgttcaat ttaatattga tttctttgaa gtgattgtgg cagtgtttag tccactcgcg
    11101 tcaatcgtac aatcttatcc aggctttgtg ctttcggttt tcattccagc atttctttat
    11161 acattcggga tttctgggtg ggttatgatg cccgcgattt acccggttta tatggcagga
    11221 ctcgcagaaa actcacaagc tgtagcaaat ggcgcaagtg catcgaacat cgcaacacaa
    11281 gaaactgtat acgcattaat ttcaatcggc ggggtcggca caaccttatc actatccatt
    11341 atgatgctca ttttaagtaa gtctttacag ctaaaagcaa tcggaaaagc agttattgtc
    11401 ccatcgattt ttaatatcaa cgaaccatta tttttcgggg caccaattgc cttcaaccca
    11461 tacttaatga ttccaacgtg gattaatgct ttcttggttc caagcatcgc ctatttcgtt
    11521 atgtcgatga acttagtaag tattcccgcg caatcgttct tgctatggta catgccttat
    11581 cctgtaacgt cttaccttgc aacacaagat ttccgaggtg tgattgcttg tttagcaatt
    11641 atcgtcatca catggcttgt ctacttgccg ttctttaaag catacgacaa ctccttactc
    11701 aaacaagaaa aattagatgc aatcgaaaca gagaaagaaa tggtaacaaa ttgattggag
    11761 gaactaaaat gtcagagcaa gactatgttg aagaaacaga tagcttaaat gaactatcca
    11821 tgaatatatt aatccatgct ggaaacgcaa gaaattacct agtgaaaggt cttaaccatt
    11881 tagaggaact agcgtttaac gaagccgagg aatttatcgc ctctgccaaa aaagaaattg
    11941 tcatcgcgca tagtctgcaa acagatacac ttcaattaga agcatcaggc aatcaaatcc
    12001 gttattccac gctgttctgt catgcgcaag atacactcat gacagccaaa agtgaaatat
    12061 taatcggcga gcatatgcta cgtttattca aaaaaatgac cgaacttacg aaaaaatagg
    12121 aggtacgagc atgtttgaaa attatcaatt tccaaaagac tttttatggg gaggagctat
    12181 cgcagccaac caagcagaag gcgcatttaa agtagatgga aaaggaatta gtttagcaga
    12241 tttgcacaaa tatcataaag ggaaaacaaa tgatgaaatc agtgaggaac aacataaagg
    12301 tgtaagtttg gctgatatca aagcaagtat ggaagacaaa gtgaactatt atccgaaacg
    12361 ccacggtatc gacttttatc acacgtatcc agaagatttg gctttgcttg ctgaaatggg
    12421 ctttaaaaca tttcgaactt cgctggactg gacacggatt tttccaactg gcgaagaaac
    12481 agaaccaaat gaagcgggat taaaatatta tgaccaatta attgataaaa ttatcgaact
    12541 tggcatggag ccaattatta cgatattaca ttacgaaacg ccggtggaaa ttgtcttaaa
    12601 tcatggcggt tggcataatc gtaaagttat tgatttattt gagaagtacg gcaaaacggt
    12661 acttgatcgc tacaataaaa aagtaaaata ttggattatc attaaccaaa ttaatttaat
    12721 tcaattcgaa ccatttaact ctactgcgat tccatatgat gccgtcgatg attatttatc
    12781 cgctacgtat caagctgttc ataaccaatt tgttgcaagt gcgaaaattt acgaatacgg
    12841 aaaagcgcta aatcctgatt taatgattgg tacaatgctc gctgattgca cagcctatcc
    12901 attctcctgc gatccagatg atatcgtact cgcaatgaaa cgcaaccgca tggaatattt
    12961 cttcgcagac gtgcagttcc aaggcgaata tccacagtat gcgcttaatt actttgacga
    13021 aaataatatt catatagaaa tcacagaaga cgacaaagcc attttacaaa aaaacaccat
    13081 ggattattta gcactttcct attattattc ccaaatggtg gactccaaga aaaatgattt
    13141 ggacccagct tcgattacac caaacccgca tcttaaagct aatccgtggg gctgggcagt
    13201 cgatccgaaa ggcttgtata acgcattgtc gcagtactgg gacagatatc ataaaccaat
    13261 tatcattgcc gaaaatggtt ttggaatgta tgacaaatta gaaaatggcg aaatccatga
    13321 tgattaccgg attgattatt tatccgcgca tctaaaagaa atgaaacgcg ccatgtatga
    13381 cggcgtagaa attatcgcat attgcgcttg gggaccgatt gatatagtta gttgctcctc
    13441 cgcacaaatg gaaaaaagat acggtttcat ttacgttgat ttagataacg aaggaaacgg
    13501 tacaggcaaa agaattaaaa aagacagctt ttcatggtat aaaaaagtaa tagagtctaa
    13561 tggggaagac ttagaagctt aatgtaacag agcgccagtt gtggtagttg atagctaata
    13621 caactggctt tcgatatata gggggtaaca aaaaatggat actcaaaaag aaatactagc
    13681 ttatttgcat aaacaggaaa ataagtgggt tacctcaaat gagttagcag ctttttgcga
    13741 gtgtacaaca cgaaccattc gcaacaacat ttctaaaata aatgaagcga caccgaattt
    13801 aattcgttct gcaaaacaag gctatcaaat caaccagcgt attccatttg aacttcagac
    13861 agaaagtgat gtaacagaac gaaagtcaaa actcttactc gaattaatta aaaactctac
    13921 taaaggcgtt gacctgtttg aacttgcgga tattttatat atttcagaag taaccttaaa
    13981 aaaagacatc caacaattaa aaaacgaact aaaagaagcc gatgtccaaa tcgtcaccag
    14041 taaagaccga atcaaattaa tcggaaaaga acgtgccaaa cgaaaatata tgatttcctt
    14101 gctatatgaa gaaggcggat accgtgaaag tatcaaaagt cgcattcaag aaatgattga
    14161 atttgtttct atcgataaac tgcaaaacat cgtaaaagaa gttttaacgg aagaatccat
    14221 tacaaccaat caatattcga tgatgaacat tgtcttacat tacgccatta gcatcgtccg
    14281 aattcaacaa ggaaatacac tcattgaaac ccaaaaaaca ctcatccgaa aacactccaa
    14341 agaatacgaa atatcgaaaa aaattgctaa aattctctcg gaagaatacc aaatccattt
    14401 ttcagaggca gagacaaaac aactcggact tttatatgtt ggcttgcaaa atgaacaatc
    14461 tgctaatgcc aatcatggcg aactggacca atttgtcgat aaaaaaatca tcgaagcact
    14521 taaaagcgtg ctcgccaatg tggaagaaac ctatctcatc gatctccaaa atgagcaact
    14581 ttttatcaag ctagcgattc acgtccaaag cctatactat cgctcacgtt acaaagcgta
    14641 caccagaaat ttaagcttac ttgatattaa aacgtcttac ccagtaactt ttgatattgc
    14701 tgtttacatt tcttctttgc tacaagaaaa actagcgatt gactttaacg aagatgaaat
    14761 ttcttttatc gcgctgcata tcggctcttt tctagaaagt gaaaaccgag attatattcg
    14821 cttagaaata ggcctactta ttgaggatta tcacgattta agaacaaata tgctgaaaaa
    14881 actgcgcgca cgatttgaaa atgaagctac catcaaactg atagaaaacg aggactctga
    14941 agaaaatttt gatatcattt taacaacaaa ccgagatatt gctcttgaaa aagcgggttc
    15001 catttttatt catcccttac taacgacgaa ggatatcaag aaaatcagca atcgaatcca
    15061 aacaaagaaa aaaatcttgg aaaatcactt gcgaggtcaa caaattgatc gctacatcgt
    15121 tcgttccctc tacgccaacc aaattgaccc ctcagaactg acacccgcaa aaatcagaga
    15181 gcaaatgatt tctaaaatgg aaaaacaaac cttcgtcacg ccggaattta aagaaaaagt
    15241 cgaaaaaagg gaacgaatgg cgccaacaag cttcccatcc ggcattgcta taccacattc
    15301 tatcaagaat gatgcccttc aaagtggtgt atctataatg acgctacaag agccgattta
    15361 ttggaatgac gtcaaaataa aaataattgc tctcgtcgcc atcagcaaaa aagatgcaac
    15421 agagttcaat gatttttttg aaaagtttgt agaaatcgtc tccgaaccga ttaatactaa
    15481 acgtttatca atggccgaaa gtttcgagga gttcatccaa aaactaaaaa tgatgatgga
    15541 agaaagtgag taaatggcca cacataagcc gtgtaattct atttacacgg cttataaagg
    15601 ttgaagtgac gataaaatta cgctataata taaccatcaa acgaaaagga gtgttatctt
    15661 aagccaatga aattctaatc ctgtattata tgaaaaaatg aagaaagcta tccaattctc
    15721 ggatagaaac tattttttcg gacgggattc gtatgttcat ttcgcatgat aactctttgc
    15781 tacaggcctt tttttggcgt agcctcgcgg attcctctct gaaaatattc aggaggttat
    15841 tttttatgtc tacaatcgaa ataaatcaat taaaaataga agtagcagat agagttttag
    15901 tagaaattcc tcatctgcta gttagtaaaa aagcaagaat cggcatcatc ggtcaaaatg
    15961 gtctaggaaa aacaacgcta atggaagtga ttgctggcgc taaagaagca acatctggca
    16021 cggtgactac ccaaggaaaa cttgcttaca tcaaacaact ttccactgat acaagtacga
    16081 aaagcggcgg cgaaaaaaca agaaaagcaa ttcaacatgc gatgcgccaa aacccaagtg
    16141 ttctcctagc agatgaaccg acaagcaacc tcgatgtcga aagcgtcaaa catttagaac
    16201 gtcagtggag cgatttccac ggtgcgctca taattatatc gcatgaccgt acctttttag
    16261 atgcactttg tacagaaata tgggaaatca aaaaccaaaa aattcacgta tacaaaggaa
    16321 actaccacgc gtatttagaa caaaaacaac aacaagaaaa ccaagcggaa ctcgtataca
    16381 aagaatttaa aaacaaaaag caacaactac aagcctccca aacacaccat gaaatcgaag
    16441 caggtcgcat tgtcaaacct ggaaaacgcc taaacaacaa agaagccagc gcgtttaaag
    16501 ccggaaaagg cacacaacaa aagaaacaac acagtaccat caaagcttta gaaaaacgaa
    16561 ttgaacggct cggcaatgtc gaaaaaccac atacaactaa accaatcaaa atgatcaccc
    16621 cagacaatcg cgtcataaaa aaaggtaata cgatactaag tgtcaaagaa acaacctacg
    16681 agatcgcagg acgaaaacta tttgaaacaa aagctttttc tattaaagca ggggataaag
    16741 tggcgctaat cggtgaaaat gcgagcggga aaactacatt tttaaaagaa ataatccaag
    16801 aaaatcctaa tctcctatgt aatccccaag cgaaaattgc ttatttcgac caagaattga
    16861 atggattaaa ccaaacgaaa tccctgttag aaaacatctc ggaaattagc gttcaaacca
    16921 agcaagtaaa cagagaagta ctaggtagca tgcattttaa agaaagcgat ttgcataagg
    16981 aagtgcgcat gctctctggc ggggaacgag tgaagttgct gctcagtatg ctcctcgtta
    17041 gtgacgccaa tttcttgatt cttgatgaac caaccaacta tttggatatc tatgcaatgg
    17101 aagcgctgga aacgttaatc aaacaatttg cggggacagt actattcgtt tcgcatgata
    17161 gaacttttgt taaccacgtg gcagaacaat tactcgtcat cgaaaataat gaaatgactt
    17221 tccaccggat gactttcgcg gaatatgaag aaagtaaagc gccaagtcgc atcacagaag
    17281 aagataagtt gattttagaa atgcgcatgt cagaaattgc agccaagctt atgcaaccga
    17341 atttaaagcc cacagaaaaa gccatgctcg aacaagatta tcaagaaatt atcacaaaaa
    17401 gacaacaatt tagttaaatt gttgtctttt tattcaag
//
LOCUS       DASEAA010000041        17359 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.041, whole genome shotgun sequence.
ACCESSION   DASEAA010000041 DASEAA010000000
VERSION     DASEAA010000041.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17359
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.041"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..2385
                     /locus_tag="U0342_001187"
     CDS             <1..2385
                     /locus_tag="U0342_001187"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEM2422539.1"
                     /translation="YQLTLDMKMNYTENKIDNQNLANNYYLSIGNGASFVSSLSGAVS
                     TTNNVNSADVFKVTKASTDSEGNISGVTFKNIWTDKYIAYRNGILISNSETPDSFKLI
                     RQADGSYVPELSGRYVSFSVGLVTDEAAGSKIDLYSTQEKLEQVSEAISVKALEEPAI
                     SAENISVYDKRVKIDVIGEDKDNTTVKKDNKNELFVNVYKADGTTLVKSIRIDGLPTR
                     DVSVTELSPDSDYVVKVEGKYDLLDGKGEKDKVYFSETIKTEKSLPSMTSTDYSWNPA
                     YGQRAIKGNIHFTDESSVLTNIEYRLYDAATISSNLSNLVALEQELGNKTPVATFDNM
                     TNSPEFSIYNSSGAQNFVSGKTYVIAAYMKTSLTRAPIFLSDAKELYISPPSGVSAPI
                     TLENVSTREATLKFSYNDPQSYFVGGTNKEFQYVLKNTTNGKEIKKGSFQGGNTASWI
                     NTFEELEPATGYTLTISTQYDNLNGGLVRAWNTSFNFTTDDEYVTSNSLTIQLDAGAK
                     VVKLQAKEVKPGSTTIENIKMEFYELIDYGGNNEHNQLVETKNITLPSSYPATIAADF
                     NVAGKKKNQSFLGKMIVTYRTPTNEVKTYEKTSNFITLQEDIAAGLKAFKSVRATNKT
                     LEVKLDTPQVNLTDKGDYTYELKGENGEVIDTEKVAAEDISKTVSLSMEPTSDYTLTV
                     INPDNQPVALYQGNNEENNLKAEINKDSFTLMSNNTADAETTMTVTVEPKELTAWQTV
                     QSWFGKDFTETYNIQKDELDTGVKIDANYQDTKVTVEETKSGKNFGIIELEESK"
     gene            2382..4691
                     /locus_tag="U0342_001188"
     CDS             2382..4691
                     /locus_tag="U0342_001188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422540.1"
                     /translation="MKPTWKIGIIVAAVPLIIIAVVLWGSFKEARYNLVSLPDDGVVL
                     NNEQETLQFQKGNTLYRSWNSDQLIAKNDKEDTRNEIMESTILYLNKEALMFTKSVPV
                     IDTNGVSSKLKGRQVYQQTNSSYKYKNSEITENSIVKLANRQYYLNADATLYLGGKEI
                     KKVSKPLLLIDKTGSVTIYENKKKSRFLGHMTLKVNDKTVLDASNETYTVGERKIDLA
                     SFGGTDNEKIVVKEDKKKTAESAKEKESAKKTASNSSQSENESNQTTKGTGNQLNATK
                     KYGNNLNVGNGTSDSEPNDGKDTKNNGSGSNANGGTNQSDLNEIDNYEAILRKIEDLN
                     KKLERNIPVLRIGYIAPGVTSVKVNYNYVDPNNTLIGVTKISAVDEKTGKTVNTQYVS
                     AVDTEATLKGLSPNGKYHLEFTYQYDLGTNKGIQEVKMQSDSFTTQTVAAIYQMQSVT
                     STTMKVNIALDAQIDDVKRARIKVTKADGDFFYMNVSANFLNGNGETLNVTGLSPKTA
                     YQFQTIIEMKNGETIELNSSEKYYTMQATVLRNLRASQSVNKVLQVQYDWSSADYTLN
                     QATIELEDEEDKTEVDYQIVNQEKGNIHLVPDTKRELINLKAKLVLKTTNNNTKESKT
                     FEYPVKQEIEYDKQAKLTMDLTPFQTEENSELQSEKQDLVAEKETNGNDLTAKMEDVL
                     APQNATYDMSFSMQRKALETYQLEFERKIAGIDDDNWTVWKSQQVTTDEAGQVKVTET
                     ISKLAKESFDYRVAVYDAQGALQLYVYQK"
     gene            4748..4990
                     /locus_tag="U0342_001189"
     CDS             4748..4990
                     /locus_tag="U0342_001189"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463621.1"
                     /note="Produces ATP from ADP in the presence of a proton
                     gradient across the membrane. Subunit C is part of the
                     membrane proton channel F0; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP F0F1 synthase subunit C"
                     /protein_id="HEM2422541.1"
                     /translation="MDLVVACSVIGAALAIGLATLGAAIGQGIAVSRATEIIGKNPNA
                     KKEVMGGLFLGLLMIVALMLFALAIAVILLWVNPFI"
     gene            5002..6033
                     /locus_tag="U0342_001190"
     CDS             5002..6033
                     /locus_tag="U0342_001190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM2422542.1"
                     /translation="MEKMIQTIILYSVFAVGFLYLLHFTLRKLENILTSFFYEVSQDQ
                     SLEKESLLRRLKRQKVATTQEEQKNRQLAIESEQKEELFLEEIDQLIAQNKSYEQQLQ
                     AWENEKPKQIVEVPRFETTPHAPYKSLSSYINEIFQQVFIESEEDEARLFTEAIREFD
                     ALVRTEKIRCALPYKVILQLFEMYSPDQLHLFAQSFQRYSERSSKLPVKQIYQSSYLS
                     PEQKLKVMQEEGTLDELDAEFIQFLFYMMTHYSYRQTRNLYRNFLEVYNIHFYTGLIC
                     IHVASKDSANHFEKLWQPAHRSYKIEYQVQKELIGGVIIQYGSKSIDMSYQELIKRST
                     EKMEAEVKL"
     gene            6030..7526
                     /locus_tag="U0342_001191"
     CDS             6030..7526
                     /locus_tag="U0342_001191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463623.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM2422543.1"
                     /translation="MKTIHFDMNKYETHVDLEYLKEHGRVEKISDGVIFCSGLENAAL
                     HQAVLIDERHRGVILELNEEFVGIGLIDKTNDILEGMHVGVSGKFIEVDLFEEMAGRV
                     IDTTGKMLYEESEEKPTATSPLFCVTPAIMTIDSVTRPLNTGLAVIDSITPIGRGQRQ
                     LILGNRQSGKTQIAVDTIINQHDQNVHCIYVAIGLKAAYIAEVIETLRNHGAMEYSTV
                     VATAASDSLTAQYLTPYAGMAVAEALRDQGKDVLIILDDLTKHADAYRAITLLFNRPP
                     GREAYPGDSFYIHSSLLERAVQMNEEHGGGSITAIPMIETLSDDVTAYIPTNVISITD
                     GQLFLKSDLFNRGQKPAVDVGVSVSRIGGDAQHPIIRKLSKNLTLILSQFEELKELLD
                     FGNALDDGSMKMVSDGRLLTELFKQKILSPLSVTELIVILYAFQNGFLTKIPPANIQT
                     FKDLLLEKTHMHKDFESFSAQIETINELNESHIEMLEEIIREAGRLFS"
     gene            7523..8392
                     /locus_tag="U0342_001192"
     CDS             7523..8392
                     /locus_tag="U0342_001192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM2422544.1"
                     /translation="MSSIDQARKTIKALNSTYKIVHVTELATLGKLSALREKAEAAVS
                     YYETILKSLRWVRKTMYTSNNQVKEEKNVTAIAITSERGLCGAYNSEVFVEIDQLIES
                     LGEQVTINWVVVGEQGHRYLTKLGQNITSYLQFSLENIDLETTTAVTADFIDLIHSEQ
                     MDALYVIFTKYLNAVQSEAMCEKIYPEIPEDSNTEEIEVDYVLDFETDDEQVEQLLLE
                     NYLCGLLYSMFRYSVASEYCMRRIAMKQAKDNIQKQLEEAIFNARKQALQQKTGELLD
                     IISGAQTIRKDEE"
     gene            8393..9763
                     /locus_tag="U0342_001193"
     CDS             8393..9763
                     /locus_tag="U0342_001193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463625.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM2422545.1"
                     /translation="MKKNTGTIISISGFVLKIEFNESELPEIGFALEYHTHQGTYLAE
                     VVQHTGINTVSAIAIGEVSGLARGTEVVNLGHPIEVPVGETVQGRMLNVYGKAIDGKP
                     EPAAEVKWPIFRDQPLLRELDTNKEILYTGIKVIDLICPILKGGKTGLFGGAGVGKSV
                     LMQELINNISMLGGNSVFTGVGERVREGIGLYKELEASGVLPQTTVVLGQMNESPGVR
                     MRVALTGLTIAEYLRDEEKKDVLLFIDNVFRFIQAGSEVSSLQGKIPITGGYQSTLSK
                     EVGDFQDRIASTKNGSITSIQCVFLPADDIDDPSAVATFSHLDSTIVLERSIAALGIF
                     PAVNPLQSFSRALNPTFVGERHYQLAAQVKFILQRYMELQEIINVLGMAELSDEDRKL
                     VHRARKIRNFLSQPFYVSEKFTGTEGTFVEIEDLLGSIERILNGDYDERSERDFLFIG
                     SYKDLK"
     gene            9776..10108
                     /locus_tag="U0342_001194"
     CDS             9776..10108
                     /locus_tag="U0342_001194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM2422546.1"
                     /translation="MKLKIVSPMGQFFEGEVEGFVINTKEGQQTVLEEHIDCLSFFDY
                     SEISILDAVASDPIFVALGYLHLVQNEANIMAQFASTDAEQAERIFERLNKRKQTESR
                     RSDDKRIF"
     gene            10089..10649
                     /locus_tag="U0342_001195"
     CDS             10089..10649
                     /locus_tag="U0342_001195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463627.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422547.1"
                     /translation="MTSEFFSTLLLIIGLLLGFFLAILLILVGIRRFLCSAEEPLKRI
                     QRYQLWHNRYQLNAEVTSFLIVIGASLSVSLITLQITAIPFQYTVLIFWSSWLFHLLS
                     FWKKIRVPKKMKNEMKQLAGFLLITVLYFVGFFAMKSVHFSIIQVADFPGVIQFGIRT
                     YLTICSFFVACGALIVWQRIYVKLLK"
     gene            10824..11456
                     /locus_tag="U0342_001196"
     CDS             10824..11456
                     /locus_tag="U0342_001196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2422548.1"
                     /translation="MTFLEFHQLVKEDLLIYSWIIKNFHLTRQKLMAGGEITMNREQV
                     IVMEKGLLVQVNEEGKDDLYRVFIDQRIIFTTKGDITLTALEDTTYSIIRAEELIGKL
                     EDQHLLPTFFLEIAEDFEKGLDWQRTLISVDPAERAEMILAKIIERYQINSENKPEFP
                     RWLRINVLARFAKCSVSTMSSVVNELVNEGDLNIKGTPWLLTRPYQATCA"
     gene            11754..12719
                     /gene="manX"
                     /locus_tag="U0342_001197"
     CDS             11754..12719
                     /gene="manX"
                     /locus_tag="U0342_001197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM2422549.1"
                     /translation="MVGIILATHGEFAEGILQSGTMIFGEQENVKAITLMPSEGPEDI
                     KAKMEAAIASFDSQDEVLFLVDLWGGTPFNQANGLYELHKDKWAIVAGLNLPMLIEAF
                     SSRFTMESAHEIAANILAPAQEGVRVKPEELQPQVTATEQPQAEIAAVGDGKIEFVLT
                     RVDSRLLHGQVATAWTKATHPTRIIVVSDAVAKDDLRKKLIEQAAPPGVKANVIPVQK
                     MIEISKDPRFGNTKALLLFENPQDVLRAIEGGVEIEQVNVGSMAHSVGKVVVSKVLSM
                     GKDDVETFEKLKEKGVKFDVRKVPNDSSANMEDIIKKAKHELKTQ"
     gene            12743..13549
                     /locus_tag="U0342_001198"
     CDS             12743..13549
                     /locus_tag="U0342_001198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463630.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM2422550.1"
                     /translation="MSVISIILVVLIAFLAGIEGILDEFQFHQPLIACTLIGLVTGNL
                     TACIILGGTLQMIALGWANIGAAVAPDAALASVASAIILVLGGQGVAGIPSAIAIAIP
                     LAVAGLFLTMIVRTLAVPIVHLMDRAAEKGNIRSVEWLHISAICMQGIRIAIPAAALL
                     FIPADSVQSFLEAMPAWLTDGMAIGGGMVVAVGYALVINMMATKEVWPFFVIGFVVAA
                     ISQLTLIAIGALGVALALIYLNLSKMGGGNSNGGGGGNSRDPLGDILNDY"
     gene            13571..14482
                     /locus_tag="U0342_001199"
     CDS             13571..14482
                     /locus_tag="U0342_001199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter family
                     subunit IID"
                     /protein_id="HEM2422551.1"
                     /translation="MAEKIELSKRDRLRVAWRSTFIQGSWNYERMQNGGWAFSMIPAI
                     KKLYKTKEDRSQALKRHLEFFNTHPYIASPILGVTLALEEERANGAEVDDVAIQGVKV
                     GMMGPLAGVGDPVFWFTIRPMLGALGASLALSGNILGPILFFVAWNVIRWGFMWYTQE
                     FGYKAGSKITDDLSGGLLQDITKGASILGMFVLAALVQRWVNIQFAPIISKVKLDEGA
                     YIDWSHLPQGAQGIKTALEQQQAGLALSEIKVTTLQNNLDNLIPGLAAVALTFLCMWL
                     LKKKISPIIIILGLFVVGIVGHLIGLL"
     gene            14609..14998
                     /locus_tag="U0342_001200"
     CDS             14609..14998
                     /locus_tag="U0342_001200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463632.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF956 family protein"
                     /protein_id="HEM2422552.1"
                     /translation="MVQSINTKVDLTIDATAYTGLTDYGKIMIGDKGFEFFNSRDVRK
                     FVQIPWEEVDQVIVSVMLKGKWIPRYAIKTKRNGTYTFASKRPKEVLRKIRVYVDPAN
                     MVSSLSFFDVMKRSFRSIFSKKKNKNK"
     gene            15120..15470
                     /locus_tag="U0342_001201"
     CDS             15120..15470
                     /locus_tag="U0342_001201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463633.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2200 domain-containing protein"
                     /protein_id="HEM2422553.1"
                     /translation="MKKPRIYTMSFASVYPLYIQKAEKKDRTKEEVDEIIFWLTGYDQ
                     DSLQQAIDQAIDFETFFAEAPKMNPNASLITGVICGYRVEEIEDKLMQQIRYLDKLVD
                     ELAKGKKMEKILRK"
     gene            complement(15511..17028)
                     /locus_tag="U0342_001202"
     CDS             complement(15511..17028)
                     /locus_tag="U0342_001202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide pyruvyl transferase family
                     protein"
                     /protein_id="HEM2422554.1"
                     /translation="MRPTNVYTPEDIYLKDRTGFNNGNLAYQYSIYRALWNDDVEIHA
                     DGLSSNPNLAEKINENYDLYVMPLADAFRDDFRPVLRNYTQLIRKLKIPVIVTGVGLR
                     ANYEPQLDEGFSFDEDVTNFVKAVLEKSAQIGVRGQITADYLKKLGFNAELDFRVIGC
                     PSLYTFGREIKIRDFHLTDQSTIAINASPTSSEIAINFLNNMITTYKDYHFIPQHLDE
                     FHLMYAGGPDISSDINGYPTNIQHKYYQEGRVKYFTSMPSWFDFVKKVDFSIGSRLHG
                     NVIPTIVGTPNISFVQDARMRELASYHALPHVTIDELEKTNNLQELLTKVDLKSAEKV
                     QARNFDNYIDFLDTNGLNHIYKYDKNRKSAPMDELINSITFPTSPDPISILNPQEMLN
                     RVKISTNLLKERHDFSTRYRVNLVNNQLTQLKKTTSEQNKKYQQKITETQEKNQQLEK
                     QLTDTKQKLQLTINKNHELTNKIRHYQGTLNRKSVKTTLKVANSLANLKKKVSRS"
     gene            complement(17143..>17359)
                     /locus_tag="U0342_001203"
     CDS             complement(17143..>17359)
                     /locus_tag="U0342_001203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2422555.1"
                     /translation="IFLCLLKSKEKRFSGTTYNISKSTMSHHIKLLKEAKLINLRKEG
                     TTHIYSVNEALVEEIGYFFDACKHNHK"
BASE COUNT         5938 a         2847 c         3541 g         5033 t
ORIGIN      
        1 tatcagctaa cccttgatat gaaaatgaat tatacagaaa acaaaatcga taaccaaaac
       61 ctagccaata attactatct atctattgga aatggagcgt catttgttag ctctttaagc
      121 ggagcggttt cgacaacgaa caacgtaaat agtgcggatg ttttcaaagt aacgaaagca
      181 agcaccgatt cagaaggtaa tatttccgga gttacattta aaaatatttg gactgataag
      241 tatatagctt atcgaaatgg tattttgatt agtaatagcg agactcctga ttcattcaaa
      301 ttaatccgtc aagctgatgg aagttatgta ccagaattga gcggtcgcta tgttagtttc
      361 tctgttggac tagtaacaga tgaagcagct ggatcaaaaa tcgatttata ttcaactcag
      421 gaaaaattag aacaagtttc ggaagctatt tctgtaaaag cacttgaaga gccagctatt
      481 tcagctgaga atattagtgt ttatgataaa cgcgtcaaaa tagatgttat tggtgaggat
      541 aaagacaata caacggttaa gaaagataac aagaatgaac tgtttgtaaa tgtttataaa
      601 gcagatggaa caacgctcgt taaatcaatt cggattgatg gactaccaac acgcgatgtt
      661 tctgttacag agctttcacc agattcagat tatgttgtta aagttgaagg gaaatatgat
      721 ttgttagatg gtaaaggcga aaaagacaaa gtgtattttt cagagacaat taagacagaa
      781 aaaagtttac cgagtatgac ttcaactgat tattcatgga atccagcata tggtcagcga
      841 gcaattaaag gaaatatcca ttttactgat gaaagtagcg tattaacaaa tattgaatat
      901 cgtctgtacg atgctgcgac aatttcttcc aatttatcta atttagtagc tttagagcaa
      961 gagttaggca ataaaactcc cgtagctaca tttgataata tgacaaatag tccagaattc
     1021 tctatatata acagttctgg agctcaaaat tttgtttctg gaaaaacata tgtgattgca
     1081 gcatatatga agacaagtct aacaagagca cctatcttcc taagtgatgc caaggagctt
     1141 tatatttcac cgccaagtgg tgtttctgct ccaatcacgc tagaaaatgt ttcaacaaga
     1201 gaagcgactc tgaaattctc ttataatgat ccacaaagtt attttgttgg cggaacaaat
     1261 aaagaattcc agtacgtatt aaaaaacacg acaaatggaa aggaaattaa aaaaggatcg
     1321 tttcaaggtg ggaatacagc tagttggata aatacttttg aggaattaga acctgcaaca
     1381 ggatatacgc taacaattag cacccaatac gataatctaa atggtggatt agtaagagca
     1441 tggaatacta gctttaattt cactacagat gatgaatatg taacttcgaa ctcacttacc
     1501 attcagctag atgctggagc aaaagtagtt aaattacagg ctaaagaagt caaaccagga
     1561 tctacaacga ttgaaaatat taaaatggag ttctatgagc taatcgacta tggaggcaat
     1621 aatgaacata atcaattagt tgaaactaaa aatatcactt taccaagttc ttatccagca
     1681 actattgcag cagattttaa tgtggcaggt aagaagaaaa atcaaagttt cttgggtaaa
     1741 atgattgtca cctatcgaac accaacaaat gaagttaaaa cgtatgaaaa aacatctaat
     1801 ttcattactt tacaagaaga tattgccgca ggattaaaag catttaagag tgtgcgagca
     1861 acaaataaga ctttagaagt aaaattagat actccgcaag ttaatttaac cgataaagga
     1921 gattacacgt atgaattgaa gggcgaaaat ggtgaggtaa ttgatacaga aaaagttgca
     1981 gcggaagata tttctaaaac tgtatcgtta tcaatggagc caacaagtga ttatacgttg
     2041 actgtcatta atccagataa ccagcccgtc gcactttatc aaggcaataa cgaagaaaat
     2101 aatctgaaag ctgaaatcaa caaagatagt tttacactga tgagcaataa cacagccgat
     2161 gctgaaacta caatgacagt aactgtagag cctaaagaat taacagcatg gcaaacagtt
     2221 caatcctggt ttggtaaaga ctttacagaa acttataaca tccaaaaaga tgagctagat
     2281 acaggtgtga aaattgatgc aaattatcaa gacactaaag ttactgtcga agaaacaaaa
     2341 tcaggaaaga attttggaat tattgaattg gaggagagca aatgaaacct acatggaaaa
     2401 tagggataat cgttgcagct gttccgttaa taattattgc tgtcgtctta tgggggtctt
     2461 ttaaggaggc aaggtataat cttgtctctc tccctgatga cggtgtagtc ctaaataatg
     2521 agcaagagac attgcaattt caaaagggca atacgcttta tcgcagttgg aatagtgatc
     2581 aattaattgc gaaaaacgat aaagaagata ctcgaaacga aattatggag agtaccatcc
     2641 tttatctaaa taaagaagcc ttaatgttta ctaagagtgt tcccgtcatt gatacaaatg
     2701 gggttagtag caaactaaaa ggaagacaag tctaccaaca gaccaattct tcctataaat
     2761 acaaaaactc agaaatcacg gaaaacagta ttgtaaaact agcaaaccgt caatactatt
     2821 taaacgcaga tgcaacactt tatcttggcg gcaaagaaat caaaaaagtg tcgaaaccat
     2881 tacttttgat tgataaaaca ggaagcgtca ctatttatga aaacaaaaag aaaagccgtt
     2941 ttcttggtca tatgaccttg aaagtcaatg ataaaacggt tttagatgct agtaacgaaa
     3001 cgtatactgt tggcgaacgg aaaattgatt tagctagctt tggtggaaca gacaatgaaa
     3061 agatagtcgt aaaagaagat aagaaaaaga ccgcagaatc tgcgaaagaa aaagagtctg
     3121 cgaagaaaac agcaagtaac tcctctcaat cagaaaatga aagtaaccaa acaacaaaag
     3181 gtacaggcaa tcaactcaat gctaccaaaa aatacggaaa taatttaaat gttggaaatg
     3241 gaacttctga ttcggaacca aacgatggta aggatactaa aaataatggt tcaggaagta
     3301 atgcgaatgg tggtactaat caatcagatt taaatgaaat tgataattat gaagcaatct
     3361 tacgtaaaat agaggactta aataaaaaat tagagcgaaa cattccagtg ctaagaatcg
     3421 gctatatcgc acctggagtg actagcgtga aagtcaacta taactatgta gatccgaata
     3481 acactttaat tggtgtcact aaaattagcg ccgtagatga aaaaactgga aaaacagtta
     3541 atacgcaata tgtttcagca gtagatacgg aagctacact aaaaggactt tcgccaaatg
     3601 gcaagtatca tcttgaattt acctatcaat atgatttagg aacaaataaa ggcattcagg
     3661 aagttaaaat gcaaagcgac tcttttacaa cgcaaactgt tgccgcaatt tatcaaatgc
     3721 aaagcgttac aagcacaaca atgaaagtaa atatagcgct tgatgcacaa attgatgatg
     3781 ttaaacgagc aagaattaaa gtaaccaaag cagatggaga ttttttctat atgaatgtta
     3841 gtgcgaattt tttaaatggt aacggagaaa cgcttaatgt aactgggcta agtcctaaaa
     3901 ctgcttacca attccaaacg attattgaaa tgaaaaacgg agaaaccatt gaattaaaca
     3961 gctccgagaa atattacact atgcaagcaa ctgtactaag aaatctaaga gctagtcaat
     4021 ctgtgaataa agttttacaa gtgcaatatg attggagttc ggctgattat acattaaatc
     4081 aagcaaccat cgaactggaa gacgaggaag ataaaacaga agtagattat caaatcgtta
     4141 atcaagaaaa aggtaatatt catcttgttc cagacacgaa aagggagtta atcaacttaa
     4201 aagccaaact agtactcaaa acgacaaata ataacacaaa agaaagcaaa acatttgagt
     4261 atcctgttaa gcaagaaatt gaatacgaca aacaagctaa actaacaatg gacttaacgc
     4321 cgtttcaaac tgaagaaaac agtgagttac agtctgaaaa acaagattta gtagcagaga
     4381 aagaaacgaa cggaaatgat ttaacagcta agatggaaga tgttttagcc cctcaaaacg
     4441 caacttatga tatgtccttt tcgatgcaac gtaaagctct cgaaacgtat cagttggaat
     4501 ttgaaaggaa gatagctggg atagacgatg ataattggac cgtgtggaag agtcaacaag
     4561 ttacaacgga tgaagcaggg caagtgaagg ttacagaaac catttcaaaa ctagctaaag
     4621 aaagcttcga ttatcgtgta gctgtatacg atgctcaagg tgcattacaa ctgtacgttt
     4681 atcaaaagta gtaaaaaatg atatgcattt taatacaaca aactcaaaca gaaggtagga
     4741 aacaacaatg gatttagtag ttgcatgtag cgtaattggc gcggcactgg caattgggct
     4801 tgcgacttta ggagcggcaa ttggacaagg aattgccgta agtagagcaa cagaaattat
     4861 cggaaaaaac ccgaatgcaa agaaagaagt tatgggaggt ctctttttgg gacttctcat
     4921 gatagttgca ttaatgctat ttgcactggc aatcgcagtc atcttgcttt gggttaatcc
     4981 gtttatatga tgggtgagaa tatggagaaa atgattcaaa caataattct atatagtgtt
     5041 ttcgcagtag gattcttata tttactgcat ttcaccttaa gaaaactaga aaatatcttg
     5101 actagctttt tttacgaagt gagtcaagat cagtcgcttg aaaaggaaag tcttttacgc
     5161 cgtttaaagc gacaaaaagt agcaacaaca caagaagaac aaaaaaatcg tcaattggct
     5221 attgaatcgg aacaaaaaga agagcttttt ttagaagaaa tcgatcaatt aatagctcaa
     5281 aataaaagct atgaacaaca attgcaggca tgggaaaatg aaaagccaaa gcaaatcgtg
     5341 gaggtgccta gatttgaaac aacaccacac gcaccgtaca aatcactaag tagttacatt
     5401 aatgaaattt ttcaacaagt ttttattgag tcggaagaag atgaagcgcg tctatttaca
     5461 gaagcaattc gggaatttga tgcattagtt agaacagaaa aaatacgttg tgcgctccca
     5521 tacaaagtga ttttgcagtt atttgaaatg tattcgccag accagttaca tttatttgct
     5581 cagtcatttc agagatatag tgagcgttcg agtaaacttc ctgtgaaaca aatttaccaa
     5641 agtagttatt tatcgccaga gcaaaaatta aaagtgatgc aagaagaagg tactttagat
     5701 gagttagatg ctgaatttat ccaatttctt ttttacatga tgacgcatta ctcttaccgc
     5761 caaacgcgga acctgtatcg taacttttta gaggtataca atattcattt ttatacaggt
     5821 cttatttgca tccatgtagc tagcaaagat tcagctaatc actttgaaaa actttggcag
     5881 ccggcgcata ggagctataa aatcgagtat caagtacaaa aagagttaat tggcggagtg
     5941 attattcaat atggttctaa atcaattgat atgagctacc aggaattaat taaacgatca
     6001 acagaaaaaa tggaagcgga agtgaaactt tgaaaacaat tcattttgat atgaacaaat
     6061 acgaaaccca tgtggacttg gaatatttga aagaacatgg ccgagtggaa aaaatttctg
     6121 atggagttat tttctgctca ggcctagaaa atgcagcgct acatcaggct gttttaattg
     6181 atgaaaggca ccgaggtgta attctggagc tcaatgagga atttgttgga atcggtttga
     6241 ttgataagac gaatgacatt ttagaaggta tgcatgttgg ggtctccggc aaatttatcg
     6301 aagtagacct atttgaagaa atggcagggc gtgttattga tactacagga aaaatgcttt
     6361 atgaagaaag tgaagaaaag ccgacagcaa cctctccact tttctgtgta actccagcta
     6421 ttatgacgat tgatagtgta acacgcccgc ttaatacggg gcttgcggtg attgattcta
     6481 ttacgccaat tggtcgaggt cagcgtcaat taatccttgg caatcgccag tctgggaaaa
     6541 cacaaattgc tgtggatacg ataattaacc aacatgatca aaatgtgcat tgcatctatg
     6601 ttgctattgg cttaaaagca gcttatatcg cagaagttat tgaaactctt cgaaatcatg
     6661 gagcaatgga atattctacg gttgttgcaa ctgcagccag tgattccctt accgcgcaat
     6721 atttaacacc gtatgcgggt atggcagtag cggaagcctt gcgagatcaa ggtaaagatg
     6781 tactcatcat tttagatgat ttaaccaaac atgcggatgc ttatcgagca attactttac
     6841 tctttaaccg cccgccagga agagaagctt atccaggaga tagtttttat attcactcta
     6901 gcctcttaga aagggccgtt caaatgaatg aagaacatgg tggcggttct attacagcaa
     6961 taccgatgat tgaaactcta tcagatgatg taacagctta tatccctact aatgttatct
     7021 ctattacaga tgggcaatta tttttaaaat cggatttatt caaccgtggt caaaagccag
     7081 ccgtagatgt tggtgtgtct gtttcaagga ttggcggcga tgcacaacac ccaattatac
     7141 gcaaattaag taaaaactta acgttgattc tttcgcagtt tgaggaatta aaagaattac
     7201 tcgattttgg taatgcactt gatgatggca gtatgaaaat ggtatcggat ggccgattat
     7261 taacagaatt attcaagcaa aaaattctaa gcccgttatc agtaacggaa ttaatcgtta
     7321 ttttatatgc tttccaaaat ggctttctaa caaaaatccc gcctgccaat attcagacct
     7381 tcaaagacct tttgctagaa aaaacgcata tgcataaaga ttttgagtcg ttttcagctc
     7441 agatagaaac gattaatgaa ctgaatgaat cgcacatcga aatgctagaa gagatcattc
     7501 gggaagctgg gaggcttttt agttgagtag catagaccaa gcccgaaaaa ccattaaagc
     7561 actaaattca acctataaaa tagtccatgt aacagaacta gcgacactcg gaaaactttc
     7621 cgccttaaga gaaaaagcgg aagcggctgt tagttattac gaaactattt taaaaagttt
     7681 gcgctgggtg agaaaaacta tgtacaccag taataaccaa gtaaaagaag aaaaaaatgt
     7741 tactgctatt gcgataactt ctgagcgtgg tctttgcggc gcctataata gtgaggtttt
     7801 tgttgaaatc gaccagttga ttgaatcact cggcgagcaa gtaacgataa attgggtagt
     7861 tgtaggtgaa caaggtcacc gttatttaac aaaactaggt cagaatatca cctcttattt
     7921 acagttttct cttgaaaata ttgatttaga aaccactacg gctgttactg ctgattttat
     7981 tgacctaatt cattcggaac aaatggacgc actatatgtg attttcacga aatatttgaa
     8041 tgcagttcaa tcagaagcta tgtgtgaaaa aatttatcct gaaattccag aagactcgaa
     8101 tacggaggaa attgaagtag attatgtact cgatttcgag acggatgatg agcaggtgga
     8161 gcagttatta ttagaaaact atttgtgtgg cttgctttat agcatgtttc gttactcggt
     8221 tgccagtgaa tattgcatgc gccgaatcgc gatgaaacaa gccaaagaca atatccagaa
     8281 acaattggaa gaagctattt ttaatgccag aaagcaagca ttacaacaaa aaactggcga
     8341 attactcgat atcattagtg gagcacagac gattaggaag gacgaagaat aaatgaaaaa
     8401 aaacacagga accattatta gtattagtgg ttttgtttta aaaatcgaat ttaatgagag
     8461 cgaactgcct gaaattggct ttgcgcttga gtatcataca catcaaggaa cttatctagc
     8521 tgaagttgtt caacatactg gaattaatac agtgtctgcc atcgctattg gtgaggtaag
     8581 tggcttggct agaggtacgg aagtcgttaa tttaggacat ccaattgaag tacctgttgg
     8641 ggaaaccgtc caaggaagaa tgctaaatgt atatggaaaa gcgattgacg gcaaaccaga
     8701 accagctgcg gaagtaaaat ggccaatatt ccgtgaccag cctttacttc gagagctaga
     8761 tacgaataaa gaaattcttt acactggtat taaagttata gatcttattt gtcctatttt
     8821 aaaaggtggg aaaacaggtt tattcggtgg agcgggtgta gggaaatctg tcttaatgca
     8881 agaattgatt aataatatca gtatgcttgg tggtaactct gtatttactg gggttggaga
     8941 aagagttaga gagggaatcg gcttgtataa agaattagaa gcaagtggtg tgctccctca
     9001 aacaaccgtt gtacttggtc aaatgaatga atctccaggt gtacggatgc gcgtggcatt
     9061 aacaggacta acgattgcag aatatctacg agatgaagag aaaaaagatg ttttattatt
     9121 tatagataat gtcttccgct ttattcaagc gggttctgaa gtttcttctt tacaaggaaa
     9181 aattcctatt actggaggtt accaatccac actttccaaa gaggtcggcg attttcaaga
     9241 ccgcatcgcg tctactaaaa atggctctat tacctcgatt cagtgtgtat ttttaccagc
     9301 agatgatatt gatgatccat ctgcagttgc gacgtttagc catctagact caacaattgt
     9361 attagagcgt tcgattgcgg cacttgggat tttcccagcg gttaatccac ttcaatcatt
     9421 ctcaagagca ctcaatccaa cctttgttgg cgagcgacac taccaattag cggcgcaagt
     9481 gaaatttatc ttacagcgtt atatggaact gcaagaaatc atcaacgtac ttggaatggc
     9541 agaattaagt gatgaagata gaaaactagt tcatcgtgca aggaaaatcc ggaatttcct
     9601 ttcacaacca ttctatgttt cggaaaaatt cactggaaca gaaggcacat ttgtagaaat
     9661 tgaagatttg ctagggagta tcgaacgcat tttgaacggt gattatgatg aacgctcaga
     9721 acgtgatttc ctatttatcg gatcctacaa agacttgaaa taggaggaga aggaaatgaa
     9781 acttaaaatc gtctcgccta tggggcagtt ttttgaagga gaagtagagg gctttgttat
     9841 taatacaaaa gaaggacaac aaaccgtgtt agaagagcat attgattgtt taagcttttt
     9901 tgactatagt gaaatcagta ttttagatgc agttgcttcg gacccaatct ttgtggcact
     9961 tggatattta catttagtac aaaatgaagc aaatatcatg gcacagtttg cttctacgga
    10021 tgccgagcaa gcggagcgga tttttgaaag actaaacaag cgaaaacaaa cagagagtag
    10081 gcggtccgat gacaagcgaa ttttttagta cacttctgtt gattattggt ttattacttg
    10141 gtttttttct ggcgatatta ttgattttgg tggggattcg gcgcttttta tgtagcgctg
    10201 aggaaccctt aaaacgaatc cagcgctatc aattatggca taatcgctat cagttaaatg
    10261 cagaggttac ttctttttta attgttattg gagcatcact ttcagtaagc cttattacat
    10321 tacaaattac cgcaattcct tttcaatata cggtgctaat attttggagt agttggctat
    10381 tccacttact ttctttttgg aagaagataa gagtacctaa aaaaatgaag aacgaaatga
    10441 agcaattagc aggatttctt ttgatcacag tgctttattt tgttggtttt tttgcaatga
    10501 agtcagtgca tttttctatt atacaagtag cagattttcc gggagttatt cagttcggaa
    10561 taagaaccta tctaactatt tgtagttttt ttgtggcgtg tggggcatta attgtttggc
    10621 agcgcatcta tgtgaaacta ctaaaatgac taagaatgtg aataaagcat aaccaagaaa
    10681 agtgaggatg tctacgtggc atcctttttt ataaatgaat ataaaaaaag aatttttcta
    10741 acatatttct aacatacttg tactatactt taaataagct gttgattagc cataagaaaa
    10801 tgaacgaaag gaagtaaatt caaatgactt ttttagaatt ccatcaattg gtcaaagaag
    10861 atttgttgat ttattcatgg attataaaaa attttcacct tacgcgtcaa aaattaatgg
    10921 cgggtggcga aataacgatg aaccgtgaac aagtaatagt catggagaaa ggtttactag
    10981 tacaagtaaa cgaggaaggt aaagatgatt tgtatcgtgt ttttatcgat caacgaatta
    11041 tttttacaac aaaaggagac attaccttaa cggcgttaga agataccact tatagcatca
    11101 ttcgagcaga agaattaatt ggaaaattag aagaccaaca tttattacca acatttttct
    11161 tagaaatagc ggaagacttt gagaaaggtc tagactggca aagaacgcta atttctgttg
    11221 atcctgcaga acgtgcggaa atgattttgg cgaaaattat cgagcgttat caaataaatt
    11281 cagagaacaa accagaattt ccaagatggt taagaataaa tgtactagca agatttgcca
    11341 aatgctcagt gtctactatg tcgtcagttg taaacgaact agtcaatgaa ggtgacttaa
    11401 atataaaagg aacaccttgg ttattgactc gaccttatca ggcaacttgt gcttaaaaca
    11461 gacctgtaaa aaaccacgct taaatgacat ttgcgtggtt tttttacgcg atctataaaa
    11521 aaagataaat ttattacgtt tttttgatat agatacaaca attttcagat acactaaata
    11581 atcaaaacgt attttctgta tcaataggcg atacactaat gattatagta ttaatataga
    11641 tgttaaaatc attggtgtat aagggttttg agagtaatac tataaattgg cacagaactt
    11701 gcaataaata tagcgggtag caaaataaat gaattatatt aggagggaaa aagatggtag
    11761 gaattatcct cgcaactcac ggtgaatttg ctgaaggtat tttgcagtcc ggaacaatga
    11821 ttttcggcga gcaagaaaac gttaaagcaa tcactttgat gccaagcgaa ggtccagaag
    11881 acatcaaagc taaaatggaa gctgcaattg catcctttga tagccaagat gaagttttat
    11941 tcttagtgga tctttgggga ggcacaccat tcaatcaagc aaacggtctt tatgaactac
    12001 ataaagataa gtgggcaatc gtagcaggac ttaatttgcc aatgctgatt gaagctttct
    12061 catcacgttt tacaatggaa agcgcacacg aaatcgcagc aaatattctt gcaccagctc
    12121 aagaaggtgt ccgcgttaaa ccagaagaac tacagccgca agtaacagct actgaacagc
    12181 cacaagcaga aatcgctgca gttggtgatg gcaaaatcga attcgtttta actcgtgttg
    12241 attcacgtct cttgcatggt caagtagcca ctgcatggac aaaagcaaca cacccaacaa
    12301 gaattatcgt cgtttcagat gcagttgcaa aagacgacct tcgtaaaaaa ttaatcgaac
    12361 aagcagcacc accaggagta aaagctaacg ttatcccagt ccaaaaaatg attgagattt
    12421 caaaagatcc gcgtttcggc aatacaaaag cacttttatt attcgaaaat cctcaagatg
    12481 ttttacgcgc aattgaaggt ggcgtagaaa tcgaacaagt aaacgttggt tccatggctc
    12541 actctgtagg taaagttgtt gttagcaaag tactttccat ggggaaagat gatgttgaaa
    12601 cctttgagaa actaaaagaa aaaggcgtta aattcgatgt gcgtaaagtc cctaatgact
    12661 caagcgcaaa catggaagac atcatcaaaa aagcaaaaca cgaactaaag acacaataaa
    12721 aaattaaaat aggaggttta ttatgtctgt catatcaata attttagtag tacttattgc
    12781 atttttagca ggtattgaag gaattctaga tgaatttcag ttccatcagc cattaatcgc
    12841 atgtacatta attggtctcg taacaggtaa cttaacagca tgtatcatcc ttggcggaac
    12901 tctacaaatg atcgcacttg gatgggcaaa catcggagca gccgtagcac cagatgccgc
    12961 gcttgcctca gtagcttcag caattatatt agtattaggt ggacaagggg tagcaggtat
    13021 tccatctgca atcgcgattg caattccact agcagtagca ggtcttttct taacaatgat
    13081 cgttcgtaca ttggcagttc caattgttca cttgatggac agagccgctg aaaaagggaa
    13141 tatacgcagc gtagagtggt tacatatttc agcaatttgt atgcaaggta ttcgtatcgc
    13201 gattcctgca gcagcacttt tattcattcc agcagacagc gttcaatctt tcttagaagc
    13261 aatgccagct tggttaacag atggtatggc tatcggtgga ggaatggtag ttgccgttgg
    13321 ttatgcacta gttatcaaca tgatggctac taaagaagta tggccgttct tcgtaatcgg
    13381 tttcgtagta gctgcaattt ctcaacttac acttatcgca attggtgctc taggtgttgc
    13441 acttgctctt atttacctta acctatctaa aatgggtggc ggtaactcaa acggcggtgg
    13501 aggcggaaac tctcgcgatc cactgggcga tatattaaac gactattaat aaaaaaagga
    13561 ggagaataga atggcagaaa aaatcgaatt atcaaagaga gaccgtctac gcgtagcatg
    13621 gcgctctacg ttcattcaag gttcatggaa ctacgaacgt atgcaaaatg gtggctgggc
    13681 attctctatg attcccgcta ttaaaaaatt atataaaact aaagaagatc gttcgcaagc
    13741 tctaaaacgt cacttagaat tctttaatac acatccatat attgcatctc caattctagg
    13801 ggtaacactt gctcttgaag aagaacgtgc caatggagca gaagttgatg atgtagcaat
    13861 tcaaggggtt aaagttggta tgatgggacc tctagctggt gttggtgatc cagtattctg
    13921 gtttacaatt cgtccaatgt taggagcatt aggtgcttct cttgccttga gtggaaacat
    13981 tcttggacca atcttattct tcgttgcttg gaacgtaatc cgttggggct tcatgtggta
    14041 tacacaagaa ttcggctaca aagctggttc taaaattact gatgaccttt ctggtggatt
    14101 actacaagac attacaaaag gtgcttcgat actcgggatg ttcgtcctcg ccgccttggt
    14161 gcagagatgg gtaaatatcc agtttgcgcc aattatctcg aaagttaaac ttgatgaagg
    14221 tgcgtatatt gattggagtc atcttccaca aggcgctcaa ggtatcaaaa ctgctttaga
    14281 acaacaacaa gcaggtttag ctctttctga aattaaagta acaaccttgc aaaataactt
    14341 ggataactta atcccaggac ttgcagcagt agctcttaca ttcctatgta tgtggttact
    14401 taagaaaaaa atcagcccaa ttatcatcat tctaggtcta ttcgtagttg gtatagttgg
    14461 tcacttaatc gggcttctgt aaaaataagc tgatcgaaaa gaggctggtg caatattcac
    14521 cgagcctctt ttcgtttaga tatatgacac agataaacga atacggtata ataaacaaaa
    14581 caagcgaaaa gaaatggagc gaatacagtt ggttcaatcg attaatacaa aggtagactt
    14641 aacaatagat gccaccgcgt atactggact tacagattac gggaaaatta tgattggcga
    14701 caaaggtttt gaatttttta actcacgtga tgtgcgtaaa ttcgtccaaa tcccttggga
    14761 agaagtagat caagttatcg tatccgttat gctaaaaggt aagtggatcc ctcgctacgc
    14821 cattaaaaca aagcgcaacg gcacatacac atttgcttct aaacgaccta aagaagtttt
    14881 acgtaaaata cgagtttatg tcgacccagc caatatggtg agctcgctca gtttctttga
    14941 tgttatgaag cgctcgtttc ggtcgatatt tagcaagaaa aaaaacaaaa ataaataagc
    15001 cgatttatac cgaaaagctt caatggattt atgtctgttg atgctttttt tcgtacataa
    15061 taattgaaca aaccacgtac tttgttataa tctaaagtaa acaaaggagg aacaccaata
    15121 tgaaaaaacc aagaatctac acgatgtcat tcgctagtgt ataccctctt tacatacaaa
    15181 aagcggagaa aaaagaccgc acaaaagaag aagtggatga aattattttt tggctaaccg
    15241 gctatgatca agattctttg caacaagcaa tcgaccaagc aattgatttc gagaccttct
    15301 ttgccgaagc accaaaaatg aatccgaatg cttccttaat caccggagtt atttgcggct
    15361 accgagtaga agaaattgaa gataaactaa tgcaacaaat tcgttatttg gataaattgg
    15421 tggatgaact cgcaaaaggg aaaaaaatgg agaagatttt aaggaaataa gaaaaaagca
    15481 gccggatttg gatggctgct tttttattgc ttagcttctg gagactttct tttttaaatt
    15541 tgctagagag ttcgctactt ttaaagtagt ttttacagat tttcggttta atgttccttg
    15601 ataatgtctg attttattag ttagttcgtg atttttatta atcgtcaact gtaatttttg
    15661 tttagtatct gtcagttgtt tttctaattg ctgatttttt tcttgtgttt cagtaatttt
    15721 ttgttggtat tttttgtttt gttcagaagt tgtttttttc agttgggtaa gttgattatt
    15781 tacgagattg acgcggtatc ttgtgctaaa atcatgtctt tcttttaata aattggtgga
    15841 gatttttact cggtttagca tttcttgagg gtttaatatg gaaatggggt ctggacttgt
    15901 tgggaaagta atggagttta taagttcatc catgggagct gattttctgt ttttatcgta
    15961 tttatagata tgattgagac cattagtatc taagaaatca atataattat caaaatttct
    16021 tgcttggact ttttcggctg atttcaggtc cactttagtt agtaattctt ggaggttgtt
    16081 ggttttttct aattcatcga tggttacgtg aggaagcgca tggtaggaag ctagttcacg
    16141 cattctggca tcttgtacga aagaaatatt aggtgttccg actattgttg gaatgacgtt
    16201 tccatgtagg cgagagccaa tgctaaaatc aactttcttc acaaaatcga accaactagg
    16261 catgctagtg aaatatttta ctcgaccttc ttgataatac ttatgttgga tatttgttgg
    16321 gtagccattg atatcactag agatatctgg accgccggca tacattaaat ggaattcgtc
    16381 taggtgttga gggataaagt gatagtcttt atatgtagta atcatgttgt taaggaaatt
    16441 gatagctatt tctgaagaag ttggggatgc attaatagcg atggtggatt gatctgttaa
    16501 gtgaaaatct cttattttta tttctcgtcc gaatgtataa agggacggac aaccaattac
    16561 tcggaagtca agttctgcgt taaatcctag tttttttaaa taatctgcag taatttgtcc
    16621 tcgaacccca atttgagctg atttttctag gactgcttta acaaagttag taacatcttc
    16681 atcaaaagaa aaaccttcgt ctagttgtgg ttcgtaattc gctcttaacc cgacgcctgt
    16741 tacgatgact gggattttta atttgcgaat gagttgggtg taattgcgga gtactggcct
    16801 aaagtcgtct cgaaatgcgt cagctaaagg cataacatag aggtcgtaat tttcattgat
    16861 tttttctgcg agattggggt tagatgaaag accgtcagca tgtatttcta catcatcatt
    16921 ccacaaagct cgataaatgc tatattgata cgcaagatta ccattgttaa acccggttcg
    16981 atcctttaaa tagatgtctt ccggcgtgta gacattggtc ggtcgcatac ccgatctaat
    17041 gagtattcgc ttcactaaaa aaccacatcc ttaagtaagt taatatttaa agtatatcaa
    17101 aatattaacc tggttaacaa ttttaaagat gaaattcatg gtttatttgt gattatgttt
    17161 acatgcatca aagaagtagc cgatttcttc cactaatgct tcattcaccg aataaatatg
    17221 cgtggttcct tcctttctta aattaataag ttttgcttct ttaagcagtt taatgtggtg
    17281 agacatggta gatttggaga tattgtaagt tgtgccagag aagcgttttt ctttgctttt
    17341 cagtaaacat aggaaaata
//
LOCUS       DASEAA010000042        17260 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.042, whole genome shotgun sequence.
ACCESSION   DASEAA010000042 DASEAA010000000
VERSION     DASEAA010000042.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17260)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17260)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17260
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.042"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            49..411
                     /locus_tag="U0342_001204"
     CDS             49..411
                     /locus_tag="U0342_001204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422556.1"
                     /translation="MENKSDFEVCIGKSDSATTNFKIKDNGNNHEVIVRVSIALERTM
                     PKEPKDYICEFVKLAKEVMKEKSYQEFLVVDLTASNCERINGTLILPNFNELAYEPEP
                     GHEILFQKVKDVELKGSY"
     gene            591..1196
                     /locus_tag="U0342_001205"
     CDS             591..1196
                     /locus_tag="U0342_001205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016627749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2422557.1"
                     /translation="MEEVQPIKDLKKIALMKDILSRGEFGERNVLLFSIGINTAYRIS
                     DLLSLKLSDVLEIYRQKVRVKSRLKMTEQKTEKNNSVILTKKLQKDIWDFVSKEHAGW
                     IVQQDLDHYLFTSRKKNAGERPLSRQQGWHIISEAGKKAGLENLGTHSMRKTFGYHLY
                     KNGVGLELIQVLLNHSSPRITLRYIGIEQEDKDQAVSSLGL"
     gene            1253..1639
                     /locus_tag="U0342_001206"
     CDS             1253..1639
                     /locus_tag="U0342_001206"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422558.1"
                     /translation="MEKLKTNINNIYKDDLDLAKKERREPFYILVGYELTTGLLNVIE
                     RNPNQNVSISSILDYYKMDTQELYDFVIQNRPEIPEFFSMVAFSLETFADVQEYNFRL
                     LNFILSKESKVNWRSRKQIAGAKEII"
     gene            1826..2110
                     /locus_tag="U0342_001207"
     CDS             1826..2110
                     /locus_tag="U0342_001207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 domain-containing protein"
                     /protein_id="HEM2422559.1"
                     /translation="MREIKVNEVTFQQHATKLASKSSGSYLPLKNGNMAYSRANSIDQ
                     LRSALIDLVGVVEDFQQVTKQDASRIKKMGIAYAKQDQLMGQKMNQLEVR"
     gene            2111..2479
                     /locus_tag="U0342_001208"
     CDS             2111..2479
                     /locus_tag="U0342_001208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P"
                     /protein_id="HEM2422560.1"
                     /translation="MDSAHSKLEQQLQQIKKAKITAETNVDQTRRKQNEQDWLEEDSN
                     QLTHEKLALLDFLRSGWQGEAASGFHRYLEEQQQEEFQAWRKDLQDKRTYLDTELQEN
                     KARLHTLETKQATLQKEWSQ"
     gene            2476..3933
                     /locus_tag="U0342_001209"
     CDS             2476..3933
                     /locus_tag="U0342_001209"
                     /inference="COORDINATES: protein motif:HMM:NF025768.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422561.1"
                     /translation="MSRIDIAELNDFLYGLRSSNAEAKAMIRKIKEAAMDYAQDNSLK
                     GEAVSTSKRYFTSTYTSICQSIIEALDESEERLAQYIREFGSQVDSSPSARIDAEILQ
                     EAMAKVSQLQRKEEDLHRQLTAPNTKPDMQQVYAVKARSVHTQLLKAIEQENILEKYL
                     AFEQSHGHFFSALDELIRSTGRAVQELLHHVTFNDKTGTYSVPKSATNSLLLMKKALD
                     NARKENNNDPFPDGFEDYTVLAFTYVNGQGKTVTMWLLEKDGKRVENKELQDFLDKHG
                     QELPGISYTEISGEELERRVNDSWKDGVNYLTGQKVSGFTGGVLSSSAYVASMKDWFD
                     DAGLTDMALGLGFGIAAARNKVVIPEKPPITVPKNYSQIRTYWKNEVVFKGTKVYQKD
                     NIIDINKVDVKGRTNLQRMEKGLAPLGSDGNPINLHHMTQREISSIAEVEQSFHQINS
                     KTIHINPNSIPTGIDRKTFNKWRSDYWKERAKEFK"
     gene            3947..4420
                     /locus_tag="U0342_001210"
     CDS             3947..4420
                     /locus_tag="U0342_001210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEM2422562.1"
                     /translation="MSIEKYNQAKHVIEENDYLVDDFGGASDTIIEKAQVVLNVNFPE
                     DYKAFLADFGALTFGSIEIYGVFKEDFKNSGVPDTVWSTMNERKLVDMPKHLTILYNT
                     GMGELYCLNFADLNSHNEPKITSYYPGFPEKSQQNEVLYDNFGEFLLDMVQEETE"
     gene            4566..4856
                     /locus_tag="U0342_001211"
     CDS             4566..4856
                     /locus_tag="U0342_001211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014092303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YolD-like family protein"
                     /protein_id="HEM2422563.1"
                     /translation="MFLLFLEVLAMEMMLIGKKYYERVTQPIVTKERWEQYLKLIHDS
                     MDNDYSLRFTTYSGGYEHHVSGKCYLFNESLKTILVSGIIVRDTEIISIERL"
     gene            4843..5062
                     /locus_tag="U0342_001212"
                     /pseudo
     CDS             4843..5062
                     /locus_tag="U0342_001212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728161.1"
                     /note="frameshifted; incomplete; partial in the middle of
                     a contig; missing C-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            5197..6510
                     /locus_tag="U0342_001213"
     CDS             5197..6510
                     /locus_tag="U0342_001213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011011047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HEM2422564.1"
                     /translation="MVQVEDYSHAPRRDILCVDVKSFFASVECVKRGLDPLKAKLVVM
                     SNADRAGGLVLAASPAMKKIHRIKTGSRMYELPTWDKEIIIAPPRMKLYLKVNAMIQD
                     IFLRYVPREFFLAYSIDEAFLDVTGSHRLFGSTQEIAEKIQADILRELRLFVTVGIGD
                     NLLLSKLALDNAAKHQDDGIATWRYEDVPNTIWKIRSLEDMWGIGHRTAENLKRLGIF
                     SVYALSQAPPPLLKSRLGVIGEQLYYHSHGIDYSKINEKYVPVSKSYGKSQILERDYH
                     DPFEVVIVIQEMAEEIAMRLRKQHVNTSVVHIGIRYSKFSVKSGFRHQMKVDATSSNK
                     EIVGHFLTLFWQYYENEAVRQVELSCGGITRKAGLQLNLFENPERTINQEQLDTTIDK
                     IRQRYGFRSMMHASSLLTGATGLKRSDIYSTLSRDQDIQYTYIFL"
     gene            6571..7671
                     /locus_tag="U0342_001214"
     CDS             6571..7671
                     /locus_tag="U0342_001214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009932612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM2422565.1"
                     /translation="MRVQEVILNNGGRRYLVLDDQGKPIQPVLQYMKYLDNTQKSPNT
                     QRTYCYALRDYFVFLSLTETSYELANIKTIANFLSWLVNPTLIERVQHLIPPTLKSEK
                     TVNLKVTAVLSFYKFLYQFEHIEYDVAQRAYVDVKGIKQYKGFLHHITKNKRVSESIL
                     KLKEPKSRVETIPDFTLQAALGATTNVRDFFLLRLLYETGLRIGEILSLHKEDILFDL
                     HQGHRVRLVYRKEQPNDSRQKTGLREVHISANLIDLFDDYMYSILDFDRSDSLFVKVK
                     GKSQGLPLNYQDVMATFKRIEGKIEYHLHPHLYRHTHATKYYEQTKDIKIVQERLGHK
                     HIQTTMNLYLHPTDKEIRAQWEKASPAFRMEE"
     gene            7671..9755
                     /locus_tag="U0342_001215"
     CDS             7671..9755
                     /locus_tag="U0342_001215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine-type recombinase/integrase"
                     /protein_id="HEM2422566.1"
                     /translation="MEAHFTKSYPLKEYEEKLRAILSTYTRKEILADGSVQETVIEDD
                     YLLVNDIWKLDFFVNIPQFRERLTEYRENPVNHIFIITFNSVHPIINLELKCLYKLKI
                     FNDEWTAYSSFQKHTHRYRVINFMQLFYPESSSLKELDIDKAEEQYIAWLRETGIEVT
                     EEKKFRHGRPVEIRKVRTAAFLRSAYNSIMHYLDDRPLWVRDVWRLKDFQDSFDFEYH
                     KSSPQGFVRFDSIENNELKQMAKDYIKDRLLGKRHMSWHSAQAYSRILSRFFNIISPT
                     GTEKKAIRNLERKDILAFIEWTRCYYAENNRKGLENHLNRCMGVLQKFLEELQLLEHK
                     EAPRKSIRQLINPGDFPKYTQHRQVNSIPDSVLEQLFSNLNYLHPEVIPIVWITFKTG
                     LRISDVLTLTNKCLITVNESPYLQLDISKTKVHNHRIPIDTHIADIITFLAKRCELET
                     NMDNNPKRYLFPRLSGTRKGRPFTQGFVREELNTLAIKQNIAGEDGEIYHFRMHEFRH
                     TYAVKLLNNGADILTVQELLAHASPEMTMVYARYSDDNKRKEFEKVLASGTFEFSQNG
                     LLQKIEPDQLNKENLDSLWQNHKLNAIDNPYGTCMARLNGKCPFINEPPCLSCNNGNP
                     CKDLAIGLSDLDNEKYQLHIKTMTKTIELLKSNGRMDLVEKNEHLLEKYTDIERKITQ
                     GSIIYGRSNRTD"
     gene            9765..10133
                     /locus_tag="U0342_001216"
     CDS             9765..10133
                     /locus_tag="U0342_001216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM2422567.1"
                     /translation="MTFDQRKHLKMLHKKRRAETLEKVEQAIYYLEATKQPINFSRIA
                     KQSGVGKSTLYSIPEVKDRIIIFREVSLGKSYTQKVKKEQDTSVIQSLKRKIQTLETE
                     NKELKLKIKHIYGQVFENTD"
     gene            complement(10178..10474)
                     /locus_tag="U0342_001217"
     CDS             complement(10178..10474)
                     /locus_tag="U0342_001217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422568.1"
                     /translation="MTLNVEGAEFDYHTENSEKLTKDFLNFVLIDVPFFALQDELLYL
                     MNKRNITRFRIPSYMTVDSKDHIFYFQLRTVEGNDLLRIYRYLGMDLEKKGLNL"
     gene            complement(10471..10875)
                     /locus_tag="U0342_001218"
     CDS             complement(10471..10875)
                     /locus_tag="U0342_001218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422569.1"
                     /translation="MGESFMSYHPDPLIRDYDDRGMAKWMGFYLSEHTAEMDIEKKGR
                     NTFWSRKPKMSETEISEMLESSYTTRDVVEIQLSELNTEGNAYADIIGVVEGFRDTSI
                     FVSHPDTGIQVIPSNSINHIRMINPNKWSDLS"
     gene            complement(10892..11494)
                     /locus_tag="U0342_001219"
     CDS             complement(10892..11494)
                     /locus_tag="U0342_001219"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422570.1"
                     /translation="MNELLFIKENFNVVSISFMRNGEIQKKLYDWYLPYDYLGKIHLH
                     TKATITINGWKKKVFIANLSYHPKAKMLYKPFPLVPSQQPSWQIQLICQLMNYYGIKY
                     DRERMFKGLTTIENRPLRVDVAFQKSNQWHIIEYHGTHHYFKRGCSTKRFQNILRNME
                     IKRQWCRKNNVRYLEIPFFRQNDIQEMVETFLETPFPEEV"
     gene            complement(11528..12868)
                     /locus_tag="U0342_001220"
     CDS             complement(11528..12868)
                     /locus_tag="U0342_001220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Y-family DNA polymerase"
                     /protein_id="HEM2422571.1"
                     /translation="MNFNYDLEPTGDYAFIDMKSFYASCELVARGRHLLKDLLVVMSQ
                     ADNTSGLILASSPMAKKAFGISNVTRSWELPTVEENPMMKKLIVAPPRMRYYIVENLK
                     IQKIVRKYAADEDIMWYSIDEGVVELTHSLNYFVPDKSLTRKEKLNIVSQMIQKDILR
                     ETGIYSTVGMSNSNPLLAKLALDNEAKSTVNMRASWNYSDVETKVWAMPEISDFWGIG
                     HRMKQNLYNMGVSTIYDLAHATPYRLKEKFGVIGLQLYHHANGIDRTKIQERYVPKSE
                     NLGNSQILPRYYKGDEMPLVIREMAEQVAIRLRRRQAKTSTVNLSIGYSKDELEKGFS
                     RQLKITPTDNTDKLAGHLLYLFNKFYTGCLVRNIGVSYSGLLYHAGSQLNLFEEPEEQ
                     IKNEKLDQIMDQIREKYGFVSIVRASSTLEHARSLSQANLVGGHAGGAGGLDGL"
     gene            complement(13032..13439)
                     /gene="arsC"
                     /locus_tag="U0342_001221"
     CDS             complement(13032..13439)
                     /gene="arsC"
                     /locus_tag="U0342_001221"
                     /EC_number="1.20.4.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase (thioredoxin)"
                     /protein_id="HEM2422572.1"
                     /translation="MKKIYFLCTGNSCRSQMAEGYAHKLLPKSQFEIRSAGIETHGLN
                     PKAVKVMAEDGIDISEQTSDLLDMSYFNKADLIVTLCGDAKDKCPVIPKGKEHFHWNL
                     SDPAKASGSEEEILAQFRKTRDLIKRNVLAIKN"
     gene            complement(13436..14521)
                     /gene="arsB"
                     /locus_tag="U0342_001222"
     CDS             complement(13436..14521)
                     /gene="arsB"
                     /locus_tag="U0342_001222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ACR3 family arsenite efflux transporter"
                     /protein_id="HEM2422573.1"
                     /translation="MENTEKQGLGVFEKYLTLWVVICMALGISIGKFLPVIPATLSQF
                     EYYNVSIPTAILIWLMIFPMMLKIDFGSIVNVSKKPKGLIVTCVTNWLIKPFTMYAIA
                     AFFFYVVFKSWIPLDLAKEYVAGAVILGAAPCTAMVFVWSHLTKGDAAYTLVQVAVND
                     LIILILFAPIVAFLLGVDNVVVPMATLLLSTVLFVVVPLFLGFLTRSLIIKRKGLAYF
                     ETVFLKKFDSVTIIGLLLTLIIIFSFQGQKILANPLHILLIAIPLTIQTLLIFSIAYG
                     WARLWKLPHSIASPAGMIGASNFFELAVAVAISLFGLQSGATLATVVGVLVEVPVMLL
                     LVKIANNTKHWFPNDTEQTARLRGENI"
     gene            complement(14587..16311)
                     /gene="arsA"
                     /locus_tag="U0342_001223"
     CDS             complement(14587..16311)
                     /gene="arsA"
                     /locus_tag="U0342_001223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenical pump-driving ATPase"
                     /protein_id="HEM2422574.1"
                     /translation="MIQYLPERMGLTKYLFFTGKGGVGKTTTACATATSLAQDNKKVM
                     LVSTDPASNLQDVFQTTLTNKPTPIEGIDNLQVANFDPITAAAEYKESIVGPYRGILP
                     DSALANMEEQLSGSCTVEIAAFNEFANFLTDPEVADQFDYVIFDTAPTGHTLRMLQLP
                     SAWNNYLDENTTGVSCLGQLSGLGDKKDMYEKAVETLTDAEQTTLILVTRPQKAPLIE
                     AERASEELRKLGIQNQKLVVNGLLEVHDDEISQLIYQEQTHDLENMPEPLKDFDTFYI
                     PLRPYNVTGIDKLQILLSDQQPALEEQEKEVTDFPNLDTVVKEFIRSNKKIIFTMGKG
                     GVGKTTVAIKIAKKLAQEGKKVHLATTDPADHLNMFISDDLPISISHIDEEKELADYK
                     EEVLSKARATMNDDDVAYVEEDLRSPCTQEIAVFRAFAEIVDKSDDEIVVIDTAPTGH
                     TLLLLDSTQSYAREVERSSGEVPVSIQKLLPRLQNSDDTEVLMVTLPETTPVYESMRL
                     DEDLDRAKISHTWWLVNQSMYAADTQNDVLKARSFNELEWIEKVAELSNGKFAVEEWQ
                     PDFSPVGV"
     gene            complement(16357..16725)
                     /gene="arsD"
                     /locus_tag="U0342_001224"
     CDS             complement(16357..16725)
                     /gene="arsD"
                     /locus_tag="U0342_001224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenite efflux transporter metallochaperone
                     ArsD"
                     /protein_id="HEM2422575.1"
                     /translation="MMKKLELFEPAMCCSTGVCGPSVDEELLMVTSVFETFEGLDSIE
                     ASRHNLTSDPDAFVNHPTILKLLQEKGNDILPVTLLDGEVVKEAAYPTLEEFGKYAEV
                     QFVTQAANNSGGCCGGEGCC"
     gene            complement(16700..17047)
                     /locus_tag="U0342_001225"
     CDS             complement(16700..17047)
                     /locus_tag="U0342_001225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003749815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2422576.1"
                     /translation="MNYDEMSVMLKALADPKRLKIIDMLSCGSLCACDILAHFDFTQP
                     TLSHHMKVLEKAGVVLVTKEGQWHHYQLTESFVDKFMGSMMHLFSDEDECVCHNKNCS
                     CKGEKNDEKIGTI"
BASE COUNT         5770 a         3112 c         3314 g         5064 t
ORIGIN      
        1 ggatatacta tattagaaaa aataatcaaa ataaaaagga gaacattaat ggaaaataaa
       61 agtgattttg aagtatgtat aggaaagtct gattcagcaa caacaaattt taaaattaaa
      121 gacaatggga ataatcatga agtaatagtg agagttagta ttgcattaga gaggacaatg
      181 ccaaaggaac ccaaggatta tatttgtgag tttgtaaaac tagctaagga agttatgaaa
      241 gaaaaaagtt accaagagtt tttagtagta gacttaacag ctagtaattg tgaaagaatc
      301 aatggaacat taatattgcc taattttaat gagttagctt atgaacctga acctggacat
      361 gaaattttat ttcaaaaagt aaaagatgtt gagttgaaag ggtcatacta aaaatatcga
      421 atcttactca atgacattga gtaagattgg tgtaaatggc gtgaaacatt ggcgttctaa
      481 gagagaagac gattttttgt tttctctttt ttcttccttc attttgaatc ttacttaata
      541 tatggtataa tgatgttaag taatattcgg aaaagaggtg gatttttcaa atggaagaag
      601 tgcaaccgat taaagatttg aaaaaaatag cattgatgaa agacatttta tccagggggg
      661 aatttggaga aagaaacgtg ttactttttt ccatcggtat aaatacggct tatcgcattt
      721 cagatttgtt gagtttgaag ttaagtgatg tgttagaaat atatcggcaa aaagtccggg
      781 tgaaaagtcg attgaagatg accgagcaaa aaacggaaaa aaacaactcc gtgatcttaa
      841 cgaagaagtt gcagaaggat atttgggatt ttgtatcgaa agaacatgca ggatggattg
      901 tgcagcaaga tttagaccac tacttgttca cgagtcgcaa gaaaaacgcc ggagaacggc
      961 cgttaagtag gcaacaaggg tggcatatta tttcagaagc cggtaaaaaa gccggattag
     1021 agaatctggg tacgcatagc atgcggaaaa cgtttggtta ccatctatat aaaaatgggg
     1081 tgggattaga acttatccag gtgctattaa atcactcatc gccacgtatt actttgcgat
     1141 atatcgggat cgagcaagag gataaagacc aagcggtaag tagcttgggt ttatagttat
     1201 ttcattggca acgtaacagg aacaacacaa gtgataatag gagttgattt tcttggagaa
     1261 gttaaaaacg aatattaata atatatataa agatgatcta gatttagcaa aaaaagaacg
     1321 tagggaacca ttttatattc tcgttgggta tgagttgact acgggattgt taaatgttat
     1381 tgaaaggaat ccaaatcaaa atgtttctat ttcttctata ttagattatt acaaaatgga
     1441 cacgcaagag ttgtatgatt ttgtaataca aaatagacca gaaattccgg agtttttttc
     1501 aatggttgca tttagtttag aaacgtttgc cgatgtacag gagtataatt tcagattact
     1561 taattttata ttgagtaagg aaagtaaagt taattggaga agtagaaaac agatagcagg
     1621 cgcgaaagag attatataat cgaactacag ttttcatact gagatagtat gcgacacgaa
     1681 atgttaattt attcacttaa atatcctcta tagtactatt tcctactaaa tagattcaca
     1741 aaacgctcac aaaagccatg tgctaccgat gttataatgg gagagtatga aactaaatcc
     1801 tattacacag agaggaagca cctagatgag agaaataaaa gtcaacgaag taaccttcca
     1861 acaacatgca actaaattgg caagtaaaag ttcgggaagt tatttgccat taaaaaacgg
     1921 gaacatggcg tattccagag ctaattcgat tgatcaattg cgatcggcat tgattgattt
     1981 ggtaggcgta gtggaagatt ttcaacaagt gaccaagcaa gatgccagcc gtataaagaa
     2041 aatgggtatt gcctatgcta aacaagacca attgatggga caaaaaatga atcagttgga
     2101 ggtgcgttaa atggatagcg cacacagcaa gctagaacaa caactccaac aaatcaaaaa
     2161 agcaaagata acggcagaaa caaatgtgga tcaaacgaga agaaaacaaa atgaacaaga
     2221 ttggctagaa gaagacagta accaattaac acacgaaaaa ctagctttac tagacttttt
     2281 acgcagtggc tggcaaggag aagcagccag tggttttcat cgttatttag aagagcagca
     2341 gcaggaagag tttcaagctt ggaggaagga tctccaggat aaaagaacct atttagacac
     2401 ggaattacaa gaaaataagg ccaggctcca cacactagaa acaaaacaag ccaccttgca
     2461 aaaggagtgg agccaatgag ccggatagat attgcggaat tgaatgactt tctctacggt
     2521 ttgcgaagta gtaatgccga agccaaagcg atgattagaa agattaaaga agcagcgatg
     2581 gattatgccc aggacaatag tttaaaaggg gaagcagtta gtacctccaa acggtatttt
     2641 acgagtacct atacaagtat ttgccagagc atcatcgaag cactggatga aagtgaagag
     2701 cgactagcac aatatattcg cgagtttggg agccaagtgg atagttcgcc ttctgccaga
     2761 attgatgcag aaatcttaca agaagcgatg gccaaagtca gccagttaca gcgaaaagaa
     2821 gaagatttac accgacaatt gaccgcaccg aacaccaagc cggatatgca acaagtctat
     2881 gcagtaaaag caagaagtgt ccacacgcaa ttactgaaag ccatcgaaca agagaacatc
     2941 ctagaaaaat atttggcttt cgaacaaagc cacggccatt tttttagtgc attagatgaa
     3001 cttattcgat ccaccggacg tgcggtacaa gagttgttac atcatgtcac ttttaatgat
     3061 aaaacaggta cctactccgt cccaaaaagt gcgacaaata gcttgttgct tatgaaaaaa
     3121 gcactggata acgcacgaaa agaaaacaac aatgatccat ttccggatgg ttttgaggat
     3181 tacaccgtgt tagcctttac atatgtgaat ggccaaggta aaacggttac gatgtggcta
     3241 cttgaaaaag atggaaaacg ggtagagaac aaggaattac aagacttctt agacaaacat
     3301 ggccaggaat tacctggtat ttcttacaca gaaatttctg gggaagaact cgaacggaga
     3361 gtaaatgaca gttggaaaga tggagttaac tatttaactg gacaaaaagt ttctggattt
     3421 accggtggtg tattaagttc ctccgcctat gtagctagca tgaaggattg gtttgatgat
     3481 gcagggttaa cggacatggc attaggctta gggtttggaa ttgcagcagc tagaaataaa
     3541 gtagttatac ctgaaaaacc tcctattact gtccctaaaa actactcgca aattaggaca
     3601 tactggaaaa atgaggtagt ttttaaagga acgaaagttt atcaaaaaga taatataatt
     3661 gatattaaca aggtcgatgt taagggacgt actaatctcc agagaatgga gaaaggttta
     3721 gctccactcg gatcggacgg aaatcctata aatttgcatc atatgacaca gagagagata
     3781 agctccattg ctgaagtaga gcagtctttt caccaaatta attctaaaac aattcatata
     3841 aaccctaatt ctattccaac gggaatagat aggaaaactt ttaataaatg gcgttctgac
     3901 tattggaaag agagagcaaa agaatttaag taaaggagat tttgtaatga gtatcgaaaa
     3961 atacaatcaa gcaaaacatg taatagaaga aaatgattat ttggtagatg attttggcgg
     4021 agcttcagat actattatag aaaaagcaca agtggtctta aatgtgaatt ttccagaaga
     4081 ctataaagca tttttagctg attttggcgc attaacattt ggctccattg aaatttatgg
     4141 agtttttaaa gaggatttta aaaactctgg ggttcctgat actgtttgga gtactatgaa
     4201 tgagagaaaa ttagtagata tgcctaaaca cctcactatt ttgtacaaca cgggaatggg
     4261 agaactatat tgcctgaatt ttgctgattt aaacagtcac aatgaaccta aaattacttc
     4321 atattatcct ggctttcctg aaaaatcgca acaaaatgaa gttttgtatg ataattttgg
     4381 agaatttctc ttagatatgg tacaggaaga aacagagtaa aatggttgcg agttaacgaa
     4441 tattatagac attcaagtca tgaaaaatag ctcacaaata gtaaaaatta acctttaatt
     4501 ataaaaaatg ataaaaaaga cacattgtaa ataagaacat atgtttgtat aatgtataca
     4561 aacatatgtt cttattattt ttggaggttt tggccatgga aatgatgtta attgggaaaa
     4621 agtattatga gagagtcact caacctattg tcactaaaga acgctgggag caatacttga
     4681 agttaataca tgactctatg gataatgact attctctgcg gttcactact tacagtggtg
     4741 gttatgaaca tcatgtttca ggcaaatgct atttatttaa tgaatcgttg aagactattc
     4801 ttgtatccgg aattattgtt cgagatacag aaataatttc aattgaaagg ttgtgatttt
     4861 gatgacctat cgagatcgag gaataaaaaa atggcaagga tttttcttga gtgaacataa
     4921 tgaacaaatg gatcagcaac aagcatcaac caggttaaaa tggcgagaag ctatgtcgtc
     4981 agaatgcatt gagagcgtgt taagtgctgc tatcactcac cagtcttcat tagtgataca
     5041 aaaaaagccc ttaaatgcgg atgcttttcc ggaaccggat ataataggca gaatttctgg
     5101 tgtagatggt gaaactattt ttattcaatc aactgccgga attatttccc tttctttctc
     5161 cagtatctta aatattgaag aacggaaatt agaaaaatgg tacaagtaga agattattct
     5221 catgcaccac gaagagatat tttatgtgtc gatgtaaaat cattctttgc cagtgtcgaa
     5281 tgcgtgaaac gcggattaga tcctttgaaa gcgaaattag ttgtaatgag taatgcagat
     5341 cgcgccggag gtttagtgct tgcagcaagc cctgcaatga agaaaatcca ccgaatcaaa
     5401 acaggctcaa gaatgtatga acttcccacc tgggacaaag aaatcatcat tgctccccca
     5461 cgcatgaaat tatatttaaa agtgaatgcg atgatccagg atatattttt acgctatgtc
     5521 cccagagagt tttttctcgc ctactcaata gatgaggcat ttttagatgt cacaggttct
     5581 cacaggttgt ttgggtcgac acaagaaatt gcggagaaaa ttcaagcaga tattttaaga
     5641 gaattacgcc tttttgtgac agtcggaatt ggtgataatt tattgttatc taagctggca
     5701 ttagataatg cagcgaaaca tcaggatgat gggattgcta cctggagata tgaagatgtc
     5761 ccgaacacta tttggaaaat tagaagttta gaagatatgt gggggattgg ccatcgtaca
     5821 gctgaaaatt tgaagcggct aggaatattt agtgtctatg cactaagtca agcccctccc
     5881 ccactgctaa agagtaggct aggggtgata ggggagcagt tatactatca ttctcatgga
     5941 attgattata gtaaaataaa tgaaaaatat gttcctgttt ctaagtcata tggtaagagc
     6001 cagattttag agcgtgatta ccatgatcct tttgaggttg tgatagttat tcaagaaatg
     6061 gctgaagaga ttgccatgag attgagaaag cagcatgtaa atacgtctgt agtccatata
     6121 gggattagat acagtaagtt tagtgtgaag agtggattta gacatcaaat gaaagtagat
     6181 gctactagta gtaacaagga aattgttggt cactttctta cgctattctg gcagtattat
     6241 gagaatgaag ctgtacgaca agtagaatta tcttgcggtg gaattactag gaaagcagga
     6301 cttcaattaa acttatttga aaatccggaa agaactatta accaggagca attagacact
     6361 actatagata agattagaca gcgctatggt tttagatcga tgatgcatgc aagtagtttg
     6421 ttaactggag caacaggatt aaaacgctct gatatctata gtacccttag tagagaccaa
     6481 gatatccaat atacttacat tttcttatag gctggacagt ccttttctta ctgtctacta
     6541 tatgagagaa taaacaaaag gaggctttct atgagagtac aagaagtcat attaaacaat
     6601 ggagggagaa gatatttagt tctagacgat caagggaaac cgattcaacc agttttacaa
     6661 tatatgaagt atctagataa tacacaaaag agtcccaaca cacagcgtac ttactgctat
     6721 gcattgagag actattttgt ttttttgtct ttaactgaaa caagctacga acttgccaac
     6781 atcaaaacaa tagcaaattt tctatcctgg ttagtaaacc ccactttaat tgaaagagtt
     6841 caacacctaa taccccccac tttaaaaagc gaaaagacag tcaacttaaa agttacagct
     6901 gtactatcct tctacaaatt tctctaccaa tttgagcata ttgaatatga tgtcgctcag
     6961 cgagcgtatg tagatgtaaa aggtatcaag caatataaag gttttttaca tcacatcacc
     7021 aaaaataaaa gagtatcaga aagtatctta aaattaaagg aacccaaaag cagagttgaa
     7081 acaattccag acttcacttt acaagcagcg ttaggagcta caacgaatgt aagggatttc
     7141 tttttgcttc ggttacttta tgaaacaggg ttaagaattg gagaaatatt gtcgctgcac
     7201 aaagaagata tcttattcga tcttcaccaa ggacaccgag ttcgtctagt ttatcgaaaa
     7261 gaacaaccga atgactctcg tcagaaaacc ggcttacgtg aagttcatat ctccgccaac
     7321 ttaatcgact tattcgacga ctatatgtac agcattttag attttgatcg ctccgattct
     7381 ttattcgtaa aagttaaggg gaagtcccaa ggactacccc ttaactatca agatgttatg
     7441 gcaacattta aaagaattga aggaaaaatc gagtaccatt tacatccaca tttataccgg
     7501 catacccacg ctactaagta ttacgaacaa actaaagata tcaaaattgt tcaagagcga
     7561 cttggtcaca aacacatcca gacaacaatg aacctctatt tacatccaac agataaagaa
     7621 atccgagcac agtgggaaaa agcgagtcca gcttttagaa tggaggaata atggaagcac
     7681 attttactaa gtcttatcca ttgaaagagt acgaggaaaa attacgagca atacttagca
     7741 cgtatacaag aaaagaaatc ttagctgatg gttctgtcca agagacagtt attgaagatg
     7801 actatctttt agtaaatgat atttggaaac ttgatttttt tgtcaatatt ccgcaattcc
     7861 gtgaacgcct aacggagtat agagaaaatc cggtcaatca tatattcata ataacattta
     7921 attcggttca ccctatcata aatctagagt tgaaatgtct atacaagtta aaaatattca
     7981 atgatgagtg gacagcttac tccagctttc aaaagcacac gcatcgttat cgagttatta
     8041 attttatgca attgttctat cctgaatcca gctcgttaaa agaactagat attgataaag
     8101 ctgaagaaca atatattgcc tggttacgtg aaacaggaat tgaagtaacg gaagaaaaaa
     8161 aatttagaca tggtcgtccc gtagaaatta gaaaagttag aacagcagcc ttcctcagat
     8221 cagcctacaa ttcaatcatg cactacttgg acgatcgtcc attatgggta agagatgtat
     8281 ggcgtttaaa agacttccaa gatagctttg attttgagta ccataaatca agtccgcaag
     8341 gatttgttcg ctttgatagc attgaaaata acgagttaaa acaaatggca aaagattata
     8401 taaaagatcg gcttttaggt aaacggcaca tgagctggca tagtgcgcaa gcatactcta
     8461 gaatactcag ccgctttttt aacatcattt caccgacagg gactgaaaaa aaggctattc
     8521 gtaatcttga aagaaaagat atactagcct ttattgagtg gacgcgttgt tattatgcag
     8581 agaataatcg caaaggattg gagaatcacc tgaatcgttg catgggagta ctacaaaaat
     8641 tcttggaaga attacaatta cttgaacata aagaagcacc tagaaaatcg atccggcaac
     8701 taattaatcc tggtgatttc cctaaatata ctcaacacag acaggttaat agtatccctg
     8761 atagcgtctt agagcaactt ttcagcaatc taaattattt acatccagag gtcattccaa
     8821 ttgtctggat tacgttcaaa acaggtctga ggatatctga cgttcttacc ttaacaaata
     8881 agtgtttgat aactgtcaac gagagtccct atctgcaact agacatttca aaaacaaaag
     8941 tgcataacca tcggatacca attgataccc acatagctga cattatcacc tttttagcga
     9001 agagatgtga gctagaaaca aatatggaca ataatcctaa gagatactta tttccacgtt
     9061 tatctggaac tagaaaagga cgtcctttta cgcaaggctt tgtaagagaa gaattgaata
     9121 ctttggcaat taaacaaaat attgctggtg aagatggaga aatttatcat ttccgaatgc
     9181 atgaatttcg tcatacctac gctgttaaat tactgaataa tggagcggat attttaacag
     9241 tccaagaact attggcccac gcatccccag aaatgacgat ggtctatgca aggtattctg
     9301 atgacaataa aagaaaagaa ttcgaaaaag ttctagcaag tggcacattc gagtttagtc
     9361 aaaatggttt attgcaaaaa atagaaccgg atcagttgaa taaagagaat cttgattctc
     9421 tttggcagaa tcacaaattg aacgctatcg ataatcccta cgggacttgt atggctcgtt
     9481 taaatgggaa gtgtccgttt attaatgaac caccttgttt aagctgtaat aatgggaatc
     9541 catgtaagga tttagctatc ggtttatctg atttagataa tgaaaaatat cagttgcaca
     9601 taaagaccat gacaaaaacg attgaacttt taaagagcaa tgggcgaatg gatctagttg
     9661 aaaaaaatga gcatcttcta gaaaaataca ctgatattga acgcaaaatc acgcaaggaa
     9721 gtattatcta tggaagatca aaccggacag attaggagaa aattatgacc tttgatcaaa
     9781 ggaaacatct gaagatgtta cacaagaaaa gacgtgccga aactcttgaa aaagttgaac
     9841 aagctattta ctatcttgaa gcaacaaagc agcctattaa tttctcgagg atagcaaaac
     9901 aatctggtgt tgggaaatcg acactgtatt caattccaga agtaaaagat cgaataatta
     9961 ttttccgtga ggtgtcttta ggaaagagtt atacgcaaaa agtaaaaaaa gagcaggata
    10021 ctagtgtgat tcaatcctta aagcgaaaga ttcaaacgct agaaacagag aacaaagaac
    10081 tgaaacttaa aatcaagcat atatacggcc aagtttttga aaatactgac taaatcaatt
    10141 taaaagggtt gaactcgcag cattgaaaaa tgtgctgtta caagttcaac cctttctttt
    10201 ccaagtccat tccaaggtat cggtatatcc ttaaaagatc gtttccttct actgttctaa
    10261 gttgaaagta aaaaatatgg tctttactgt ctactgtcat atagctaggt atcctaaacc
    10321 gggtaatatt tctcttattc atcaaataga gcagttcgtc ttgtaatgca aaaaaaggca
    10381 catctatcag aacgaagttc aaaaagtctt ttgtcaattt ttctgagttt tcagtatggt
    10441 agtcaaattc agcaccttcc acattcaacg tcatgaaaga tcactccact tatttggatt
    10501 gatcatacga atatgattga ttgaattact gggaataact tgaattccag tatctggatg
    10561 tgagacaaaa atacttgtgt ccctgaaacc ttcgacaact ccgataatat ctgcataagc
    10621 atttccttca gtattcagct cgctaagctg aatttcaaca acatctctgg tagtataaga
    10681 ggattctagc atttctgaga tttccgtttc gctcatcttc ggtttcctag accaaaatgt
    10741 atttcttccc tttttttcaa tatccatttc tgcggtatgt tcacttaaat aaaagcccat
    10801 ccactttgcc attcctcgat catcgtagtc gcgaataagt ggatcaggat gataagacat
    10861 aaatgattct cccatgtttt aaacacctcc actaaacctc ttcaggaaac ggagtttcca
    10921 aaaaagtttc taccatttcc tgaatatcat tttgtctaaa aaaaggaatt tccaaataac
    10981 gaacgttgtt tttcctacac cactgccgct tgatttccat gtttcttagg atattttgaa
    11041 atctctttgt actgcaacct cgtttgaagt aatggtgtgt accgtgatac tcaatgatgt
    11101 gccactgatt ggatttttgg aaagctacat caacacgtag tggtctattt tcaatagtag
    11161 taagaccctt gaacatcctt tcacggtcgt atttaatccc atagtaattc attagttggc
    11221 aaatgagttg aatctgccaa ctcggttgtt ggctgggaac caacggaaat ggtttgtaca
    11281 acatttttgc ctttggatga taagaaaggt tagcaatgaa gactttcttt ttccatccat
    11341 tgatagtgat cgtggctttc gtatgaaggt ggatttttcc taagtaatca tagggtaaat
    11401 accaatcata cagttttttc tgaatctcac catttctcat aaatgaaata gaaacaacat
    11461 tgaagttctc tttaataaaa agtagttcat tcataggtta ggtactcttt ctacagtttt
    11521 atagtgacta caagccatcc aaaccaccgg caccgccagc atgacctccc accaaattcg
    11581 cttgactcaa gctcctagcg tgttctaaag tagaacttgc acggacaatt gagacaaagc
    11641 catacttttc tctgatctga tccattattt gatccagctt ctcattttta atctgttctt
    11701 ccggttcttc gaacaggttt agttggcttc ctgcatgata aagcagtcct gaataagaca
    11761 caccgatatt tctaactaga cagccggtat aaaatttatt gaataaatac aataggtgtc
    11821 cagctaactt gtcagtgtta tcagtagggg taatctttag ttgccggcta aatcctttct
    11881 ctaattcgtc cttagaataa ccaattgata aattgaccgt tgaagtttta gcttgtctgc
    11941 ggcgcaaacg aatagcaacc tgttcggcca tttcccgaat caccaaaggc atttcatcac
    12001 ccttgtagta tcgtggtaaa atttgactgt ttcctagatt ttcagacttg gggacatagc
    12061 gttcttggat ttttgtccga tcaatgccat tggcatgatg gtacagctgc aaaccgatta
    12121 ccccaaattt ttcttttaat cggtaaggcg tagcatgagc caaatcatag attgtggaga
    12181 cacccatatt atacaggttt tgcttcatac ggtgaccaat cccccaaaag tcgctaatct
    12241 caggcatagc ccaaaccttt gtttctacat cggaatagtt ccaagaagcc cgcatattta
    12301 ctgtgctttt agcctcgttg tccagcgcca gtttagcaag taagggatta ctgtttgaca
    12361 taccaacggt agaataaatc ccagtttctc tcaagatatc tttttggatc atttggctga
    12421 caatatttag tttttctttc ctagttaaac ttttgtctgg tacaaagtag tttaaactgt
    12481 gggttagttc aacaacccct tcatcgatgg agtaccacat aatgtcttca tccgctgcgt
    12541 acttgcgaac gattttttga atttttaggt tttccactat gtaataacgc attctaggag
    12601 gagctacgat aagttttttc atcattggat tttcctctac cgtaggtagt tcccaagatc
    12661 ttgtgacatt actgattcca aacgctttct tcgccatcgg actgctggcc aaaattaaac
    12721 cagaagtatt atccgcctga ctcattacaa ccaaaaggtc ctttaagagg tggcgccccc
    12781 gcgctaccag ctcacagctg gcgtaaaaag atttcatatc gataaaggca tagtcaccag
    12841 tgggttctaa atcatagtta aagttcatca taatcacctt atcaaactaa gtattttctc
    12901 caaaaagaac acatgttcgt tattatagta ccttgattta ctcccctaag tcaagaaaat
    12961 ctcgttattc acaccacaaa aaagatgcca gcagctacgg actagtgcta atggcatctt
    13021 ttaaagtgaa actaattttt tatggctaga acatttcttt taattaagtc tctagttttt
    13081 ctaaactgcg ctaaaatctc ttcctcacta ccggatgctt tggcagggtc cgataagttc
    13141 caatgaaaat gttctttccc tttgggaatt accggacatt tatctttcgc atccccgcaa
    13201 agagtgacga ttagatcagc tttattaaaa tagctcatat caagcaaatc tgacgtttgt
    13261 tcagaaatat caatcccgtc ttcagccatc acttttacgg cttttggatt cagaccgtgc
    13321 gtttctattc cggcacttct aatttcaaat tgactttttg gtaagagctt atgcgcatac
    13381 ccttcagcca tctgacttct acaagagttt cctgtacaaa gaaaatagat ttttttcata
    13441 tattttcacc tctaagacgt gctgtttgtt cagtatcatt aggaaaccaa tgtttcgtat
    13501 tattggctat cttaaccaat aaaagcataa ctggtacttc tactagtaca cccactactg
    13561 tggctaaagt cgctcctgac tggagcccaa ataatgaaat agctaccgca actgctaatt
    13621 caaagaaatt actcgcaccg atcattccgg caggtgacgc aatagaatgg gggagtttcc
    13681 acaatcttgc ccaaccataa gcaattgaaa agataagtaa tgtctgaatt gttaaaggga
    13741 tcgcaatcaa taaaatgtgt agcggattgg ctaatatttt ctgcccttga aaagaaaaga
    13801 taatgattag tgtcaacagt aatccaatga tcgttacgga atcaaatttc tttaaaaaga
    13861 ctgtttcaaa gtaagctaag cctttccttt taataatcaa tgagcgagta aggaagccta
    13921 agaataaggg aactactacg aaaagaacag tggataatag caaagttgcc attggaacga
    13981 ctacattatc aacacctagt aaaaaagcga caattggcgc aaacaaaatt aagataatta
    14041 gatcattcac cgctacttga accaaagtat aggcagcatc acctttggtg aggtgactcc
    14101 aaacaaagac cattgcggta catggggcgg ctcctagaat aaccgctccg gcaacatatt
    14161 cttttgccaa gtctaacggt atccaacttt taaacactac ataaaagaaa aaagcagcaa
    14221 tcgcgtacat agtgaatggc tttatcagcc aattagttac gcaagtgaca atcaatcctt
    14281 tgggcttttt tgacacgtta acaatactgc caaagtcgat tttcaacatc attgggaaaa
    14341 tcattaacca aattaagata gctgtaggaa tagaaacgtt gtaatattcg aactggctaa
    14401 gtgttgcggg aattactggt aaaaactttc cgattgaaat tcctagtgcc atacatatga
    14461 ctacccacaa ggttagatac ttctcaaaaa cacctaatcc ttgtttctct gtgttttcca
    14521 tttgaaccct ccatcatcaa tatcagccaa tacatagata gttttctatg tattggccaa
    14581 aaaattttat accccaacag ggctaaagtc tggttgccat tcttcaacag caaacttgcc
    14641 attggaaagc tccgcaactt tttcaatcca ttctaattca ttgaaagaac gagcttttaa
    14701 tacatcattt tgtgtatcag ctgcatacat gctttggtta accagccacc aggtatggga
    14761 aatctttgcc cgatccaaat cttcatctaa acgcatggat tcataaaccg gtgttgtttc
    14821 aggtaaagta accatcaaca cttccgtgtc atcagaattt tgaaggcgcg gcaaaagttt
    14881 ttgaatagag actggaactt caccagaact tctttccact tcccgagcat agctttgagt
    14941 cgaatccaac aacagtaaag tatgaccggt cggtgccgta tcaatcacga caatttcatc
    15001 atcagacttg tcaacaattt cagcaaaggc acggaatact gcaatttcct gggtacatgg
    15061 agaacgcaga tcttcttcaa cgtaagctac atcatcgtca ttcatagtag ctcttgcttt
    15121 ggacaagacc tcttctttat aatcagccaa ttctttttct tcatcgatat ggctaataga
    15181 gattggtaaa tcatccgaaa tgaacatgtt taaatgatcc gccggatcag ttgtcgctaa
    15241 atggactttt ttgccttcct gggccaactt tttagcaatc ttgatcgcta cagttgtctt
    15301 accaacgccg cctttaccca ttgtaaagat aattttctta tttgaacgga taaattcttt
    15361 tacaactgta tctaaattcg gaaaatccgt cacttctttt tcttgttctt caagtgcagg
    15421 ctgttgatca cttaatagta tttgaagctt atcaatacca gtcacattgt aaggccgtag
    15481 tgggatatag aaggtatcaa agtcttttag tggttctggc atattctcta gatcatgcgt
    15541 ctgttcttga tagataagtt gagaaatttc gtcatcatgg acttccagca acccattcac
    15601 aaccaatttt tgattttgaa tccctaattt tctcagctct tctgaagcac gctcagcttc
    15661 aatcagtggt gctttttgtg ggcgagtaac tagaattaag gttgtttgtt cagcgtctgt
    15721 taacgtttct actgcttttt cgtacatatc ttttttatcg cctagtcctg ataactgacc
    15781 taagcaagaa acaccggtgg tattttcatc cagataatta ttccaagcag aaggcagctg
    15841 tagcatacgc aatgtgtgcc ccgtcggtgc agtatcaaaa atgacataat caaactgatc
    15901 ggcaacttca ggatcagtca aaaaattggc aaactcattg aaagccgcaa tttctactgt
    15961 acaggaacca gatagctgct cttccatgtt cgctaatgca ctgtctggaa gtattccacg
    16021 gtaagggcca acgatacttt ctttatattc tgccgcagcc gtaatcggat caaagttagc
    16081 tacttgaaga ttgtcgattc cttcaatcgg tgttggctta ttggttaagg ttgtttggaa
    16141 aacatcttgt aaattagaag ccggatcggt gcttaccagc ataacttttt tattgtcttg
    16201 ggccaacgaa gtggccgtag cacaagcagt tgttgtttta cccacaccgc cttttccagt
    16261 aaagaataga tatttggtta atcccattcg ctcgggaagg tattgaatca ttttttgttt
    16321 cctcctttta taaatcatgg cttaggaaaa ggctgtttag caacagcctt cgcctccgca
    16381 gcatccgcca gaattgttgg cagcttgtgt gacaaattga acttctgcat atttaccgaa
    16441 ttcttctaag gtaggataag cagcttcttt tacaacttca ccatctaata gagtaaccgg
    16501 taaaatgtcg ttgccttttt cttgaagtaa tttcaagatg gtcgggtggt taacaaaggc
    16561 atctgggtca cttgttaagt tgtgacgtga tgcttcaata gagtctaatc cctcaaacgt
    16621 ctcgaagact gaggtaacca tcagtaattc ttcatcaaca gatggtccgc aaacgccagt
    16681 tgaacaacac atcgccggtt caaatagttc caattttttc atcattcttt tctcctttac
    16741 aactacagtt tttattgtgg caaacacatt catcttcatc agaaaataaa tgcatcattg
    16801 aacccataaa tttatctaca aagctttcgg ttaattgata gtggtgccat tgaccttctt
    16861 tagtcaccaa gacaacacct gctttttcca aaaccttcat atgatgggaa agcgttggtt
    16921 gagtaaagtc aaagtgagct aagatatcac acgcacataa actgccacaa gacagcatat
    16981 caataatttt taatcgttta ggatctgcca gggctttcag catgaccgac atttcatcgt
    17041 aattcatttg ttttcctcct tacatagaag ttcatctatg tatacaatat agacgatcat
    17101 ctatatactg tcaatcgttt ctgtcttttt tcatagaatg gatatgttca gcctactgca
    17161 aagcctagta ttatcgactt tcttcaaatt tggtattgat aagttctgaa atggttggtg
    17221 ggcataaagg ataaaaaaac gacaagaatt acgttattat
//
LOCUS       DASEAA010000043        17166 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.043, whole genome shotgun sequence.
ACCESSION   DASEAA010000043 DASEAA010000000
VERSION     DASEAA010000043.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 17166)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 17166)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..17166
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.043"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            78..704
                     /locus_tag="U0342_001226"
     CDS             78..704
                     /locus_tag="U0342_001226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465025.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEM2422577.1"
                     /translation="MLHTLIQSLQDFTMWLVDSLGHWGIFLGMLIESVCIPLPSEVIM
                     LFGGFMAEAGKLNFWLVVFAGIAGNFVGSLIAYYIGKFGGRALVLKFGKYIFLNVKHL
                     DKAELWFGRYGARAVFFGRVLPVIRTFISLPAGIAKMNVWKFVIYTILGCIPWNIFLT
                     WLGYSLGSNWSVVEKYTRPISYLMLALVIAIVVYLAYKVWNKRARNAK"
     gene            complement(750..1052)
                     /locus_tag="U0342_001227"
     CDS             complement(750..1052)
                     /locus_tag="U0342_001227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465026.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1292 domain-containing protein"
                     /protein_id="HEM2422578.1"
                     /translation="MAEEHNHNHEEENIIWITNEEGKEEAYEILFDFDSEDFDKSYVL
                     YFPAGKGEDEEIEILASSYIQDEEGKQGQLKPVETDEEWDMIEEILATFLADEDEE"
     gene            complement(1068..1484)
                     /gene="ruvX"
                     /locus_tag="U0342_001228"
     CDS             complement(1068..1484)
                     /gene="ruvX"
                     /locus_tag="U0342_001228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Holliday junction resolvase RuvX"
                     /protein_id="HEM2422579.1"
                     /translation="MRIMGLDVGSKTVGVAISDPLGWTAQGVETIQIDENRKQFGYDR
                     VKELVLEYEVEKVVVGLPKNMNNTIGPRAESSKIYAEVLESRIGLPVVLWDERLTTSA
                     AERTLIEADVSRKKRKEVIDKLAAVMILQSYLDTTN"
     gene            complement(1481..1753)
                     /locus_tag="U0342_001229"
     CDS             complement(1481..1753)
                     /locus_tag="U0342_001229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IreB family regulatory phosphoprotein"
                     /protein_id="HEM2422580.1"
                     /translation="MDSKDQTMFYNFGDDSIEEDVKKLMKQVYVALEEKGYNPVNQIV
                     GYLLSGDPAYIPRHKDARSMIRRLERDEIIEELVKAYLKNNEIGEK"
     gene            complement(1845..4484)
                     /gene="alaS"
                     /locus_tag="U0342_001230"
     CDS             complement(1845..4484)
                     /gene="alaS"
                     /locus_tag="U0342_001230"
                     /EC_number="6.1.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alanine--tRNA ligase"
                     /protein_id="HEM2422581.1"
                     /translation="MKQLSSAEVRQLFLDFFKEKGHTIEPSAPLVPNNDPTILWINSG
                     VATMKKYFDGSVIPDNPRMANAQKSIRTNDIENVGKTARHHTFFEMLGNFSIGDYFKE
                     GAIVFAWEFLTSPKWIGFDPDKLYVTVYPEDEEAKTLWREKIGLSDDHIVEIEDNFWD
                     IGIGPSGPDSEIFYDRGPAFGDDASDPELYPGGENERYLEIWNLVFSQFNHNPDGTYT
                     PLPKQNIDTGMGLERMVSIIQDAPTNFETDLFMPIIREVEQIAGVKYGHSQENDVAFK
                     VIADHIRTVAFAIGDGALPSNEGRGYILRRLLRRAVRYAKVLTINEPFMYKLVPVVGK
                     IMNSFYPEVENQTDFIQKVIRTEEERFHETLNEGLAILETILKTAKETNEQIIKGADI
                     FKLYDTFGFPVELTEEYAEDHGLKVDHAGFEAEMKEQRDRARSARADVKSMQVQGELL
                     ANLTEKSAFVGYNSTEHVSEILYLIQDDTLVEEVAAGSEAQVIFKETPFYAESGGQVA
                     DKGTIESETGLAYVEDVQKAPNKQNLHRISVKEGVLKTGDTVKLAVDKVKRRETIKNH
                     TATHLLHRALKDTLGEHVNQAGSLVSPDRLRFDFSHFGQITEEELTKMEEIVNEKIWE
                     QINVVIEEMPIAEAKELGAMALFGEKYGDIVRVVQVGKYSIELCGGVHVRNTADIGLF
                     KIVSETGIGAGTRRIEAVTGKEAYRFVTEQENTLKQAASLLKTTTKETPQKVEQLQAD
                     LREVKRENESLLSKLASAASADIFESPEEIGGVKVIAKQVNAKDMNQLRQFVDNWKDK
                     KIGGILVLGAVQGDKVNLISAVSEEAIKAGYHAGKLLKEVATRCGGNGGGRPDMAQAG
                     GKNPAELGTALDYVSTWVKEQQA"
     gene            complement(4791..5486)
                     /locus_tag="U0342_001231"
     CDS             complement(4791..5486)
                     /locus_tag="U0342_001231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2422582.1"
                     /translation="MTKVLTFENISYWYKTKEESILSDINYDFEAGVFYTVVGSSGSG
                     KTTFLSLAGGLDTQKEGDIFYKGSSLKSIGLQQFRNKYVSIVFQSYNLLTYMTALQNV
                     TTAMEITHVNQPDKKAFALSMLEKVGITEDMARQKVLTLSGGQQQRVSIARALCCETE
                     LIVADEPTGNLDERTSKEVVTLFQDLAHKEGKCVIMVTHDPEIAKVSDVKLTLKNGSF
                     VEKKQSTNSLINS"
     gene            complement(5495..6994)
                     /locus_tag="U0342_001232"
     CDS             complement(5495..6994)
                     /locus_tag="U0342_001232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422583.1"
                     /translation="MNFFKRAWLSMKARKGRSVLQLIIFTVVCVLILSGFTIQSAADK
                     ASELAREQLGGTVTLTVDREKQMQTMRDEASSSDSSSTESKPQFQSSPIDVSDANDLA
                     KLNHVASYNYYSSTQALASGFDPIESSGDTSSSSDESSTTTETQGPGGGQGGPQMVDA
                     DLSISGLLDSATSTDFEAGTSELTSGVAITSADKDKNVAMVEENLAEENDWKVGDSFT
                     VTSSDGNTKVTLKIVGIYKTTDSGSDMAQNFSFLNPYNKVYVPYTVANTIKGSDYKNT
                     VDSAVYTMDDAANISAFEKEAKKVDSIDWDTFKLDANDTLYQQMIGPINSVASFSKNV
                     VYIVSIAGALILGLLVMMQVRDRKYEMGVLLAIGEKRGKLIAQFFVEILIVALVSFGL
                     AAASSHYVAQLAGNQLLAQQNSSTTETTSSTENRGPGGGQGGPGGFGESVSNLTKNTE
                     QIKELDIQVTLEDMLKMGGIGIGIAFISVLLPAALVLRMNPKTILTKQE"
     gene            7161..7847
                     /locus_tag="U0342_001233"
     CDS             7161..7847
                     /locus_tag="U0342_001233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465032.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2422584.1"
                     /translation="MKLLMIEDNVSVCEMIEMFFMKEEIDATFVHDGKQGYEAFFKDE
                     YDIAIIDLMLPNMDGMTICRKIREVSDVPIIILTAKESESDQVLGLEMGADDYVTKPF
                     SPLTLMARIKAVTRRKNSATSTENNEDILETTYFKISKRTREIFYQGELLDALTPKEF
                     DLLYFLMQHPRQVFSREQLLEQVWGYQFYGDERTVDVHIKRLRQKIATETKPFLHTVW
                     GVGYKFDETE"
     gene            7844..9283
                     /locus_tag="U0342_001234"
     CDS             7844..9283
                     /locus_tag="U0342_001234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM2422585.1"
                     /translation="MKRMKFKYAYQLFFTQFIILLIACIMIGVLVSHSLKDYFYQSQV
                     DDLTSYGQTISRDIRYSPQDATMQVLNTYQRILDVKKIHYTIKNANDETIYPTQMNQP
                     LPKDFSISSDDKKKLESGETVSKKIDNRFNKEMTIVYVPIMNGDKFVGSIVLNSPISG
                     TEQVIGTINRYMFYTILLSITVALILSAILSKLQVNRINKLRAATKDVIQGNYKARLK
                     ENNFDEIGALAIDFNKMTQTLETSQEEIERQEKRRRQFIADVSHEMRTPLTTISGLTE
                     GLVNDIIPKSETDRCIALIDTEARRLTKLVNENLDYEKIRSNKIKLQKTRFNGKEFLE
                     LIKEQLDYVSSEKGNTITVSIDKDMAIYADYDRLTQVFINIVKNSVQFTENGQITLTG
                     TQDYKESVLTITDTGIGMNTEELEQIWERFYKADMSRTNTAFGESGIGLSIVKQLIEY
                     HDGSITVTSEPNKGTSFTIRLPFFQDNEQ"
     gene            complement(9325..11721)
                     /locus_tag="U0342_001235"
     CDS             complement(9325..11721)
                     /locus_tag="U0342_001235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RecD-like DNA helicase"
                     /protein_id="HEM2422586.1"
                     /translation="MAEQESLALFNDTPEELFMKGTMLSTIFYNAENLFSVVRILVKE
                     TNADWDEKDIIVTGFFPALHEQEVYTFYGKMQEHAKFGQQFKADRFRKEMPQSRAGLI
                     NYLSGELFKGIGKVTAENIVDTIGDDAITKILSDPSLLNTVPKLPSGAAESLLASLRE
                     NQGLEHVMVGLNEYGFGPQLSMKIFQAYKQNAIEVLENNPYKLIEDIKGIGFQRADEL
                     GRKLGLGGNHPERLRAGILFMLDSVCMQQGHVYMEQEVLLGEVTYLLEESEGIRIDQN
                     ILVAQVEKLAEEQKIITENTRVYMPSLYYSESGFAYHVKRMLKQTEYQEQFPQSEFLL
                     ALGELEERIGVHYGDSQRQALEQALMSPMLVLTGGPGTGKTTVIKGIVELYAELNGVS
                     LDPHAYKDGATFPVLLAAPTGRAAKRMSESTGLPAMTIHRLLGMNGQEQMDDDAERLI
                     DGRLLIVDEMSMVDIWLANQLFRALPAHMQVVLVGDQDQLPSVGPGQVLKDILQSEQI
                     PTVALSDIYRQKDGSSIIEMAHYIKEGMLPADFTKNSADRSFFHCTVNQIGDVVEQVV
                     KNAKNKGFRAKDIQVLAPMYRGPAGIDILNKKLQEIFNPNDTGRRKEVQFGDIKYRVH
                     DKVLQLINQPEKNVFNGDIGEIVSIIYAKENTEKQDLIVVQFDQTEVSYYRQEFNQLT
                     HAYCCSIHKAQGSEFPIVIMPIVRSYYRMLRRDLIYTGVTRSKQFLILCGEEEAFRMG
                     IERIDENKRNTTLSERLMSEDVLLEQMTNKRILTAENITEIDPMIGMEGITPEQFMAG
                     "
     gene            complement(11749..12387)
                     /locus_tag="U0342_001236"
     CDS             complement(11749..12387)
                     /locus_tag="U0342_001236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM2422587.1"
                     /translation="MQEGNLEEAVKLFTEVIEEHPSDPVGYINFGNVLLSMDDFERAE
                     LFFKRALELDDTVPAAYYSLGNLYYELERYQEAADSFQNATKQGMENGDLFFMLGMSF
                     VQMEELTLAMPYLLRSVELNPEDGEALFQYGIVLARSGFYEDAINMLERVLLVKPEDP
                     DALYNIGAAYLAWQGDIVLAKNYFERAIATGASHELAENALNAIQDLENEVE"
     gene            complement(12428..13168)
                     /locus_tag="U0342_001237"
     CDS             complement(12428..13168)
                     /locus_tag="U0342_001237"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2422588.1"
                     /translation="MKKIAIFGSAIVLFCLLIWGYFYFNSEPSTTAENAANSTKAVDV
                     LEENDILVFTPRKLDADMSVILYPGAFVDALSYAPLANKLASSGYKTYIVEMPLNLAV
                     FGKNRAADIIDEAPDEKFVIGGHSLGGVMSSRFAHDNESEIEGAFFLASYPDKKGSLK
                     NASFPALSVTATKDEVLNQDSYNKNKKYLPKDTTFVSIKGGNHAQFGSYGEQHGDGKA
                     TISGPEQTDQVANALITWLNTSVKNQER"
     gene            complement(13287..14402)
                     /gene="mnmA"
                     /locus_tag="U0342_001238"
     CDS             complement(13287..14402)
                     /gene="mnmA"
                     /locus_tag="U0342_001238"
                     /EC_number="2.8.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA 2-thiouridine(34) synthase MnmA"
                     /protein_id="HEM2422589.1"
                     /translation="MSTNNSDIRVVVGMSGGVDSSVTAHILKEQGYDVIGIFMKNWDD
                     TDEFGVCTATEDYDDVIRVANQIGIPYYAVNFEKEYWDKVFTYFLDEYKLGRTPNPDV
                     MCNKEIKFKAFLEHAESLGADYVATGHYAQVKKVGDEIELLRGVDNNKDQTYFLNQLS
                     QDQLKKVMFPLGGMEKTEVREIAKKAGLATANKKDSTGICFIGERNFKQFLSEYLPAQ
                     PGEMRTLNGEVLGKHDGLMYYTIGQRHGLGIGGDGEPWFVVGKDLKENVLFVEQGFHH
                     ETLYSDSLIATDISFTTNAEKPKTIECTAKFRYRQTDTKVTVHLREDGTAEVVFADPV
                     RAITPGQAVVFYDGDICLGGGTIDTVWKNGAKLDYVG"
     gene            complement(14421..15569)
                     /locus_tag="U0342_001239"
     CDS             complement(14421..15569)
                     /locus_tag="U0342_001239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2422590.1"
                     /translation="MENRIYLDHAATSPIHPEVIQTMLGAITNTYGNPSSIHYAGREA
                     RKALDEARHTIADSIHAIEKEIIFTSGGTEGDNLAIIGAALAQQESGKHIITSQIEHH
                     AVLKTCEYLETQGFEVTYLPVDEHGIVSIESLQEALRPDTILVSIMYGNNEIGTIQPI
                     AEIGAVLRNHQAIFHTDAVQAYGLLNINVTELGVDLLTTSSHKINGPRGVGFLYVKNG
                     TRLIYQMHGGEQERKRRAGTENLAGICGFSAASSIMMNERELKNEEYISFKKRMAEIW
                     RSADLDFEVNGLEANTLPHVFSVRFPGVSIEQLLMNLDMDGIAVSSGSACTAGTVDPS
                     HVLVALFGENHPAIQETVRISFGLGNHLEEVEMAATKISEVVTRLMKI"
     gene            complement(15684..15879)
                     /gene="ssrS"
                     /locus_tag="U0342_001240"
     ncRNA           complement(15684..15879)
                     /ncRNA_class="other"
                     /gene="ssrS"
                     /locus_tag="U0342_001240"
                     /product="6S RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00013"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00013"
     gene            complement(15950..>17166)
                     /locus_tag="U0342_001241"
     CDS             complement(15950..>17166)
                     /locus_tag="U0342_001241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="replication-associated recombination protein A"
                     /protein_id="HEM2422591.1"
                     /translation="LVGKDKIIYRMVKAKQLSSMILYGPPGIGKTSIASAIAGSTKYA
                     FRTLNAVTNNKKDMEVVAAEAKMSGTVILLLDEVHRLDKAKQDFLLPLLESGAIILIG
                     ATTSNPYIAINPAIRSRTQIFELKPLTVEDIMITMDRALSDKERGLGNYDVEIDEVAK
                     KHFATASNGDVRSALNALELAVISSEPNEDGVIHITLDVAEECLQKKSLAHDKDGDAH
                     YDVLSAFQKSVRGSDVNAALHYMGRLIEAGDLVSISRRMLVMAYEDIGLASPQAGAHT
                     LAAIQTAEKVGFPEARIPLANAVIELCLSPKSNSAIMAIDAALADIRQGKSGEVPDHL
                     RDGHYSGAEKLGRAIDYKYPHNYDNAWVDQQYLPDRLKNKLYYAPKFTSKFEQTIAGV
                     YQKINENKAKKE"
BASE COUNT         4883 a         3614 c         2998 g         5671 t
ORIGIN      
        1 cgtgatttaa cgaacaagac agaatcagtc aaagacttgc ttctgccaat taattaaata
       61 ttgaaggagt cttttggatg ttacatacat taatacaaag tttgcaagat ttcacgatgt
      121 ggttagtaga ctcgcttggg cactggggta ttttcctcgg aatgctgatt gaaagtgttt
      181 gtataccgct accaagtgaa gttattatgc tattcggtgg atttatggcg gaagccggga
      241 aacttaactt ctggctcgtt gtttttgctg gtattgctgg taacttcgtc ggttcactga
      301 ttgcttacta catcggtaaa ttcggtggta gagctttagt attgaaattc ggaaagtata
      361 tattcttaaa tgtgaagcac ttggataaag cggaattatg gtttggtcgt tacggagcaa
      421 gagctgtatt tttcggccgt gttttgccag tcatccgaac atttatctct ttaccggctg
      481 gaattgccaa aatgaatgtc tggaaatttg ttatatatac gattttaggc tgcattccgt
      541 ggaatatttt tctgacatgg cttggttatt cattaggttc caattggagc gttgtggaaa
      601 aatatacacg accaattagc tatttaatgt tagctttggt tattgccatc gttgtctacc
      661 ttgcttacaa agtatggaat aaacgcgcta gaaatgcaaa ataaaaagca tgtcttgaca
      721 gtttttgtca ggacatgctt ttttaatttt tattcttcgt cttcgtcagc taagaatgtt
      781 gcaaggattt cttcaatcat atcccattct tcatctgttt caactggttt aagttgacct
      841 tgtttgcctt cttcatcttg gatatagcta gatgcaagga tttcgatttc ttcgtcttcc
      901 cctttgccag ccgggaaata taaaacataa gatttgtcaa agtcttcgga atcaaaatca
      961 aaaagaattt cgtaagcttc ttcttttcct tcttcgtttg tgatccaaat aatattttct
     1021 tcttcatgat tatggttatg ttcttctgcc attaaattca cctcaaatta attagtagtg
     1081 tccagatagg actgtaaaat cattactgca gctaacttat caatcacttc ttttcgtttt
     1141 ttacgcgaaa cgtctgcttc aatcaaagtt ctttcagcgg cagaagtggt caaacgttca
     1201 tcccaaagta caacagggag tccaattctt gactcaagta cttcagcata tattttggaa
     1261 ctttcagcac gaggtccaat agtgttattc atattcttag gtagtccaac tacgactttt
     1321 tccacttcgt attcaagcac gagctctttt acgcggtcat agccgaattg ctttctattc
     1381 tcgtcaatct gaatggtttc cacaccttgt gcggtccaac caagtggatc acttatcgct
     1441 acgccgactg ttttcgagcc gacatctaaa cccattattc tcatttctca ccaatttcgt
     1501 tatttttcag atacgctttg acaagttcct cgataatttc atctcgttct aaacgacgta
     1561 tcatacttct agcatccttg tgacgaggaa tataagctgg atcgcctgaa agtaaatagc
     1621 caacgatttg atttacggga ttatagcctt tttcttcaag agcaacgtag acttgtttca
     1681 ttaatttttt tacatcttct tcaattgaat catcgccgaa gttgtaaaac attgtttgat
     1741 cttttgaatc cataatcgaa gcacctcatt ccttcatgta tctcctttca ttttacacta
     1801 tgtgaacgga aataacaaag aaaaatgagg cactttgatg aaatttatgc ttgttgttct
     1861 tttacccaag tagaaacgta atcaagggct gttcctagtt ctgctggatt tttaccgcca
     1921 gcttgtgcca tatcaggacg tccaccacca ttaccgccgc aacgtgttgc cacttctttt
     1981 aataatttac ctgcatggta acctgctttg attgcttctt cagagactgc ggagattaag
     2041 tttactttat cgccttgaac agcgcctaaa acaagaatgc ctccaatttt tttatctttc
     2101 cagttatcca cgaattgacg taattggttc atatcttttg catttacttg ttttgcaatc
     2161 acttttacgc cgccgatttc ttctggtgat tcaaaaatat ccgcgcttgc tgcactcgct
     2221 aatttactta atagtgattc attctcgcgt ttcacttcac gtaagtcagc ttgtaattgt
     2281 tctacttttt gcggtgtttc tttggttgtt gtttttagta gactcgctgc ctgttttaat
     2341 gtgttttctt gttctgttac aaagcgatag gcttctttgc cagtaacagc ttcgatacgt
     2401 ctagttcccg ctccgatacc tgtttcggat acgattttga atagaccaat atcagctgta
     2461 ttacgcacat ggacaccgcc acatagttca atgctgtatt tgcctacttg tacaactcgt
     2521 acgatatcgc cgtatttttc gccaaatagt gccatagcgc caagttcttt tgcttctgct
     2581 attggcattt cttcaatcac aacattgatt tgttcccaga ttttttcatt cacgatttct
     2641 tccattttcg ttaattcttc ttctgtaatt tgaccaaaat gagagaagtc aaaacgtaaa
     2701 cgatccggtg aaacaagaga tccagcttgg ttaacatgct cgcctaatgt gtctttgagt
     2761 gcgcggtgta aaaggtgtgt tgctgtatga tttttgattg tttcgcgacg ttttacttta
     2821 tcaacagcaa gtttcactgt gtcgcctgtt tttaatacgc cttctttgac agaaatacgg
     2881 tgtaaatttt gtttgtttgg cgctttttgt acatcttcta cataagcaag accagtttcg
     2941 ctctcgatgg ttcctttgtc agcaacttgt ccgccgcttt ctgcataaaa tggtgtttct
     3001 ttgaagatga cttgtgcttc acttccagct gcaacttcct ccacaagcgt gtcatcttgg
     3061 attaaataca agatttctga aacatgctct gttgaattat agccaacaaa tgcacttttt
     3121 tcggttaaat tagcaagtag ttcgccttgg acttgcatcg attttacatc agcacgagcc
     3181 gagcgagcac ggtcacgttg ttctttcatt tctgcttcga agccagcgtg atccactttt
     3241 aagccgtggt cttctgcata ttcttctgtt aattctacag ggaagccgaa tgtatcatat
     3301 aatttaaaaa tgtctgcgcc tttgataatt tgttcatttg tttctttcgc agtttttagg
     3361 attgtttcca aaattgctag accttcgttt aatgtttcgt ggaaacgttc ttcttctgta
     3421 cgaatgactt tttggataaa gtctgtttgg ttttctactt ccggatagaa actattcatg
     3481 attttcccaa ctactggtac taatttgtac atgaatggtt cgttgattgt taggactttt
     3541 gcataacgaa cagcacggcg aagtaaacga cgtaaaatat atccgcgtcc ttcgttggat
     3601 ggtaaagcgc cgtcaccgat tgcaaatgct acagtacgaa tatggtcagc aatcacttta
     3661 aatgccacat cattttcttg agaatggcca tatttcacgc cagcgatttg ttcaacttca
     3721 cgaataatag gcatgaataa atctgtttca aagttagttg gtgcgtcttg gatgatggaa
     3781 accattcgtt caagtcccat ccctgtatca atgttttgtt ttggtagcgg agtgtaagtt
     3841 ccatctggat tgtggttgaa ctgagaaaat actaagttcc aaatttctaa ataacgctca
     3901 ttttctccgc ctggatataa ttctggatca cttgcatcgt caccgaaagc aggtccacgg
     3961 tcatagaaaa tttcgctgtc tgggccactt ggtccaatac cgatatccca gaaattatct
     4021 tcaatttcga cgatatgatc atcacttaaa ccaatttttt cgcgccataa cgttttcgct
     4081 tcttcatctt ctggatacac agtcacatac aatttatctg gatcaaaacc aatccattta
     4141 gggctcgtta ggaattccca agcaaaaaca atcgcccctt ctttaaaata atcaccgata
     4201 gaaaagtttc ctagcatttc aaagaatgta tgatgacgcg ctgttttacc aacgttttca
     4261 atgtcatttg tacggattga tttttgagcg ttcgccattc ttggattatc tggaataacg
     4321 gaaccgtcaa agtatttttt catggttgct acaccactgt taatccaaag aattgtcgga
     4381 tcattatttg gcacaagtgg tgcactaggt tcgatagtat gccctttttc tttaaagaaa
     4441 tctaaaaata actgtcttac ttcagcgctt gataattgtt tcatttttta tttcctcctt
     4501 ttggttttaa caacaaaaaa agcctatatg attgctcaca gggacgattt cagtaaaatc
     4561 gcggtaccac cctgtttgca atgatataga cttgtatcat tacctcttcc gttatctgtt
     4621 aacgtggata agacggatca tctaatggga gagcaatttt ggtgcaagcg tggttttcct
     4681 tccagccatg ggaaaactct ctaatcacgt ggaaaccaaa atcatattcc tatcatgtat
     4741 caatttctat tcaacaataa actaaattat aaagaacgga tggctaaatg tcaactgttt
     4801 attagactat tcgttgattg tttcttttca acaaagcttc cgtttttaag cgttagtttc
     4861 acatcggaca cttttgcaat ctcgggatca tgcgtcacca taataacgca tttaccttct
     4921 ttatgcgcta aatcttggaa taaagtaact acttctttac tagtacgttc atccaaattt
     4981 ccggttggtt catccgctac aattaattcc gtttcacagc agagagcccg cgctatcgaa
     5041 acccgttgtt gttggccacc gcttaacgtc aatacttttt ggcgtgccat gtcttctgtg
     5101 atacctactt tttccagcat acttagagca aaggcttttt tatctggttg attaacatgg
     5161 gtaatttcca ttgcagttgt gacattttgt agtgcggtca tataggtcaa cagattataa
     5221 ctttggaaca caatcgatac atatttattt ctaaactgtt gtaagccaat acttttgagt
     5281 gagctacctt tatagaaaat atccccttct ttttgcgtat caagtcctcc tgcaagagat
     5341 aagaaagttg tttttcctga gccagaactg ccgactactg tataaaaaac acccgcttca
     5401 aaatcataat tgatgtcact taaaatagat tcttctttcg ttttatacca ataagaaata
     5461 ttttcaaacg ttaatacttt ggtcatatcg tcacctactc ctgtttagtt agaattgttt
     5521 ttggattcat acgaagaacg agtgcagctg gtaaaaggac tgagataaag gcaattccga
     5581 taccaattcc gcccattttc agcatatctt ctaatgttac ttgaatgtct aattctttga
     5641 tttgttcggt gtttttcgtc aagttgctca cgctctcacc gaatccacct ggacctcctt
     5701 gtccaccacc tggaccacgg ttttctgtcg aacttgttgt ttcagtagta gatgaatttt
     5761 gttgcgccaa taattgattg cccgctaatt gtgctacata gtgactactt gcagcggcta
     5821 ggccaaagga aaccagagct acaattaaaa tttccacaaa gaattgcgca atcaatttgc
     5881 cacgtttttc accaattgcc aaaagtacac ccatttcata tttgcggtcg cgcacttgca
     5941 tcatcacgag taggcctaag attagtgctc cggcaatact cacaatataa accacatttt
     6001 tagagaaaga tgctacgcta ttaatcgggc caatcatttg ttgataaagc gtatcattgg
     6061 catctaattt aaatgtatcc caatcaatgc tatcaacttt ttttgcttct ttttcaaaag
     6121 cagaaatatt agccgcatca tccatcgtat aaacagctga gtctactgta tttttataat
     6181 cggaaccctt aattgtatta gctactgtat aaggaacata tactttatta taaggattta
     6241 ggaaagagaa gttttgtgcc atatcacttc cagaatctgt tgttttataa atacccacaa
     6301 tctttaatgt tactttggta ttgccatcac tggatgtgac agtaaaagaa tcgccaactt
     6361 tccaatcatt ttcttctgct aaattttctt ctaccattgc tacattttta tctttatcag
     6421 cggaagtaat tgccacacca cttgttaact cactagttcc tgcttcaaaa tcagtgctag
     6481 ttgcagaatc aagtaagccg ctaatgctta aatcggcatc taccatttgc ggtccacctt
     6541 ggccgcctcc tggtccttgt gtttcggttg tagtggatga ttcatcactc gaagatgatg
     6601 tatcaccgga agactcgatt ggatcaaatc cggatgctaa agcttgtgta ctggaataat
     6661 aattgtaact tgctacatga tttaactttg ccaaatcatt agcatcacta acgtctatcg
     6721 gactactttg aaattgcggc ttggattcag ttgagctact atcactgctt gaagcctcgt
     6781 ctcgcattgt ctgcatttgt ttttctcgat caacagttag cgtcactgta ccaccaagct
     6841 gttctcgcgc caactcactc gctttatctg cagccgattg aatagtaaaa cctgataaaa
     6901 taagtacaca gacgactgtg aatataatta gttgtaaaac agatcttcct tttctcgctt
     6961 tcatgctgag ccatgctctc ttaaaaaaat tcatgtgatt tcctccattc ggtttctact
     7021 ccactaagat tactggggag ttatgaagaa agtatgaaca aactatgatg catattttaa
     7081 actttcgcga aaaaaataat ttggcttgat tattgggtct aattaggcta gttttaatgt
     7141 aagaggagtg aatacaaatt atgaaattac ttatgataga agataatgta agtgtttgtg
     7201 aaatgataga aatgttcttt atgaaagaag aaattgatgc tacgtttgtt catgacggca
     7261 agcagggtta tgaagcgttt tttaaagatg aatatgatat tgcaattatt gacctaatgc
     7321 ttcctaatat ggacggtatg accatttgcc gtaaaattcg tgaagtaagc gatgtaccaa
     7381 ttattatttt aacggctaaa gaatcagaat ccgatcaagt gcttggcctt gaaatgggtg
     7441 cggatgatta tgtaactaaa ccatttagcc cacttacttt aatggcgcga attaaagctg
     7501 ttacacgccg caaaaatagt gccacttcta cagaaaataa tgaagatatc ctagaaacaa
     7561 cttatttcaa aattagtaaa cggacacgag aaatttttta tcaaggtgag ctacttgacg
     7621 cacttacgcc aaaagaattc gatttactct attttttgat gcaacatcca cgacaagtgt
     7681 tttcaagaga acaattgctg gaacaagttt ggggttatca gttctatgga gatgagcgca
     7741 cagtggacgt tcacatcaaa cgtttacgcc aaaaaatcgc caccgaaaca aagccatttt
     7801 tgcacaccgt ctggggtgtt ggctacaaat ttgatgaaac ggaatgaagc gaatgaaatt
     7861 taaatatgct taccaattat ttttcacaca atttatcatt ttgcttattg cttgtatcat
     7921 gattggggtg cttgtctctc actccttaaa agattatttt taccaaagcc aagtagatga
     7981 cttaacaagt tatgggcaaa cgatttctag ggatattcgc tattcgccac aagatgcaac
     8041 gatgcaagtt ttgaatacgt atcagcgaat tttagatgtg aaaaaaattc attatacaat
     8101 caaaaacgcc aacgatgaaa ccatttatcc aacacagatg aatcagccgt taccaaagga
     8161 tttctctatt tcttcggatg ataagaaaaa gcttgaaagt ggcgaaacag ttagtaagaa
     8221 aatagataat cgctttaata aagaaatgac aattgtgtac gtcccaataa tgaatggcga
     8281 caaatttgtc ggttctatcg tgctcaattc acctattagc ggtacggagc aagtaattgg
     8341 tacgattaac cgctatatgt tctacactat tttactttct ataacggtag cacttattct
     8401 tagcgcaatc ttgtccaaac tacaagtaaa tcgaatcaac aaactacgag cagcgacaaa
     8461 agacgttatt caaggcaatt acaaagctcg attgaaggaa aataattttg atgaaattgg
     8521 tgcacttgcc attgatttca ataaaatgac acaaaccctt gaaacatctc aagaagaaat
     8581 agaacgacaa gagaagcgga gacgccagtt tattgctgat gtttctcatg aaatgcgtac
     8641 cccgctcaca acgattagtg gcctcacgga aggtttagta aatgatatta ttccaaaaag
     8701 tgaaacagat cgttgcatag cactcattga tacagaagct agacgtttaa cgaaactagt
     8761 caatgaaaat ttagattatg aaaaaatccg cagtaacaaa attaaacttc aaaaaacacg
     8821 ttttaatggt aaggaattcc ttgagttaat caaagaacaa cttgattatg tatcaagcga
     8881 aaaaggtaac actattactg tttctatcga taaagacatg gcgatttacg cagattacga
     8941 tcgtttaaca caagtattta tcaatatcgt caaaaatagt gtccaattta ctgaaaatgg
     9001 tcagattact ctaactggca cacaagatta taaagaatct gttttaacga taacagatac
     9061 tgggattggt atgaatacag aggaattaga acaaatttgg gaaaggtttt ataaagcaga
     9121 tatgtctcga acaaataccg cttttggcga atctggtatt ggcttatcca ttgtgaagca
     9181 gttaattgaa tatcacgatg gatcaattac agtgactagt gaaccaaata aaggtacttc
     9241 atttactatt cgccttcctt ttttccaaga taacgaacaa taaaaaaaga accactttct
     9301 atttttttag agagtggttc ttttttatcc tgccataaat tgttctggag taatcccttc
     9361 cattccaatc atcggatcaa tttccgtaat attttcagct gtgagaattc gtttatttgt
     9421 catttgttct aataaaacat cttcgctcat taaacgttca gagagtgttg tattacgttt
     9481 attttcatca attcgttcta tccccattcg aaaagcttct tcttccccgc aaagaatgag
     9541 aaattgttta cttcgcgtta ctccggtgta tattaaatcg cgccgtaaca tccggtagta
     9601 actgcggaca atcggcataa tcacaatcgg aaattcactt ccctgcgctt tatggatcga
     9661 acaacaataa gcatgggtca attgattaaa ttcttgccta tagtaagaaa cctctgtttg
     9721 gtcaaattga acgacaatca gatcttgttt ttcggtattt tctttggcgt atataataga
     9781 cacaatttca ccaatatcac cgttaaacac atttttctct ggttgattaa tcaattgcag
     9841 tactttgtca tgcacgcgat actttatgtc accaaattga acttctttac gacgccctgt
     9901 atcatttgga ttgaaaattt cttgtagttt tttatttaaa atatcaatgc ctgcaggacc
     9961 acgatacatt ggtgctaaaa cttggatgtc ttttgctcga aatcctttgt tttttgcatt
    10021 ttttaccact tgttcgacta catcaccaat ttgatttacc gtgcaatgaa aaaaggagcg
    10081 atcggcgcta tttttggtga aatcagctgg caacatgcct tcttttatat aatgcgccat
    10141 ttcgataatg gaagaaccat ccttttggcg gtaaatatct gaaagagcta cagttggaat
    10201 ttgttcagat tgcagaatat ctttgagtac ttgacctggt ccgactgaag gcaactgatc
    10261 ttggtcgcca acaagtacca cttgcatgtg cgctggtaaa gcacggaata attgattagc
    10321 aagccaaata tctaccattg acatctcatc cactatcaac agtcgtccat caatcagtct
    10381 ttctgcatca tcatccattt gttcttgacc attcattcca agtaaacggt gaatggtcat
    10441 cgcaggaagc cctgttgact cagacatccg tttagcggca cggccagttg gagcagcaag
    10501 aagaacgggg aaagtcgctc catctttgta agcatgggga tcaaggctca caccatttag
    10561 ttccgcataa agctccacta tccctttaat gactgttgtt ttccctgtcc cgggaccacc
    10621 agtaagtacg agcatcggag acattaaagc ttgttctaaa gcctgtcgct gcgaatctcc
    10681 gtagtgaacg ccaatccgtt cttctaattc tcctagagct agcagaaatt cggattgcgg
    10741 aaattgttct tggtattctg tttgtttaag cattcgcttc acgtgatatg caaagccgct
    10801 ctctgaataa tagagtgatg gcatgtaaac acgtgtattt tccgtaataa tcttttgttc
    10861 ctcagctaat ttttctactt gagctactaa aatattttgg tcaatacgaa tgccttcgct
    10921 ttcttccagt aaataagtta cttctccgag cagaacctct tgctccatat atacatgacc
    10981 ttgttgcata caaaccgaat ctaacataaa taaaatccca gcacgaagcc gttctggatg
    11041 attcccgcca agaccgagtt tccgtccaag ctcatcggca cgctgaaaac caatcccttt
    11101 tatatcctca atcaatttat aaggattatt ctctaacact tcaatcgcat tttgtttata
    11161 ggcctggaaa attttcatgg ataattgcgg accaaagcca tattcgttta atccgaccat
    11221 cacatgctcc aacccttgat tttctctaag ggaagcaagc aaactttctg ccgcgccaga
    11281 tggcaactta ggtactgtat ttagcaagct cggatcggat aaaatttttg tgatagcatc
    11341 gtcgccaatc gtatccacaa tattttcagc agtgacttta ccaatgcctt taaaaagttc
    11401 accggataga taattaatta agcccgctcg tgattgtggc atttccttac gaaaccggtc
    11461 tgctttaaac tgttgaccaa atttagcatg ttcctgcatt ttcccgtaga aagtgtatac
    11521 ttcttgctcg tgaagcgctg ggaaaaaacc ggttacgata atatcttttt cgtcccaatc
    11581 cgcattggtt tctttgacca atattcgtac aacagaaaag aggttttcgg cattgtaaaa
    11641 aatggtggac aacatcgtgc ccttcatgaa aagttcttct ggtgtatcgt taaatagagc
    11701 gagtgattct tgttcagcca tcctaagccg cctcctttct aattcgtttt actctacttc
    11761 gttctctaaa tcttgaattg catttaaggc gttttcagcc aattcatgtg aagcacctgt
    11821 agcaatcgct cgttcaaaat agtttttagc aagaacgata tctccttgcc acgccagata
    11881 agctgcacca atattgtaaa gtgcatctgg atcttcaggc ttaacaagta aaacgcgttc
    11941 taacatatta atcgcatctt cataaaaacc actgcgagca agcacaatcc catattggaa
    12001 taacgcttcg ccgtcttctg ggtttaattc gacacttcta agtaaatatg gcatcgcaag
    12061 tgttagctcc tccatttgaa caaaactcat tcctaacatg aaaaataaat caccattttc
    12121 cattccttgt tttgtggcat tttggaagct atctgccgct tcttgataac gctctaattc
    12181 ataatataaa tttcctaagc tatagtaagc agctggaact gtgtcatcta gctctagtgc
    12241 tcttttgaaa aataattccg cacgttcaaa atcatccatt gaaagtaaaa catttccaaa
    12301 attaatataa ccaactggat cacttggatg ttcttcaatt acttctgtaa ataacttgac
    12361 tgcttcttct aaatttcctt cttgcatttg tttaatacct aattgatttt tatccatgtt
    12421 atccctctta tctttcctga ttttttacag atgtattaag ccacgtaatg agcgcattcg
    12481 ctacttgatc agtttgttct ggtccactaa tcgttgcttt tccgtcccca tgttgttcgc
    12541 catatgaacc gaactgcgca tgatttccac ctttaataga gacaaaggta gtatctttag
    12601 gtaagtattt tttattttta ttataagaat cttggtttaa cacttcatcc ttagtcgctg
    12661 tgacagaaag cgctggaaaa gaagcatttt ttaaggaacc tttcttatct gggtaactag
    12721 ctaagaaaaa cgcgccttct atttcgcttt cgttatcatg tgcaaatcta gaagacatca
    12781 cgccaccaag cgagtgtcca ccaatgacaa atttttcatc cggagcctca tcaataatat
    12841 cagcagctcg atttttacca aatacagcta aattaagggg catttcaacg atgtacgttt
    12901 tgtaaccgct cgaagctagt ttgtttgcaa gaggtgcata acttaacgca tcaacaaaag
    12961 cacctggata taaaataaca ctcatatcgg catccaattt acgcggagta aaaacaagga
    13021 tgtcattttc ttcaagcaca tccactgctt tagttgaatt tgcagcattt tctgcagttg
    13081 tagacggttc tgagttgaaa taaaaatatc cccaaataag aagacaaaat aaaacaatcg
    13141 cactcccaaa aatcgctatc tttttcataa aggacctctt ttccctgttt cgtataatat
    13201 tttaccataa aatctgttta aaaaaacgca tttaaacaag aaaaaaaccg gagtctcgta
    13261 gaaaacaaga ttctccggtt ccagttttag cctacataat ctaacttcgc gccgtttttc
    13321 caaaccgtat cgattgttcc accgccaagg caaatgtccc cgtcgtaaaa tacaaccgct
    13381 tgacctggtg tgattgctcg aactggatca gcgaaaacta cttctgctgt cccatcttcg
    13441 cgcaagtgca cggttacttt cgtatcagtt tgacgatagc ggaatttggc agtacattcg
    13501 attgttttcg gtttttctgc attcgttgtg aaagaaatat ctgtcgcaat taacgaatct
    13561 gaatatagtg tttcatgatg gaaaccttgt tccacaaaca atacattttc ttttaagtct
    13621 ttaccaacaa caaaccaagg ttcaccgtct ccaccaatac ctaaaccatg gcgttgaccg
    13681 atcgtgtaat acatcaagcc gtcatgtttc cctaacactt caccgttcag tgttctcatt
    13741 tcaccaggtt gcgccggaag atattcactt aaaaattgct taaagtttct ttcgccaatg
    13801 aaacaaatcc cagtgctatc ttttttgttt gcagtagcaa gtccggcttt tttcgcaatt
    13861 tcgcgcactt ctgttttttc catgccacca aggggaaaca tcactttttt cagttgatct
    13921 tgtgaaagtt ggtttaaaaa gtacgtttga tctttattat tatcgacacc tcgaagtaat
    13981 tcaatttcat cgccgacttt tttcacttgt gcgtagtgac cagttgccac atagtccgca
    14041 ccaagacttt ccgcatgttc taaaaatgcc ttaaatttaa tttctttatt acacataacg
    14101 tctgggtttg gcgtgcgacc gagcttgtat tcatctaaaa aatacgtaaa cactttatcc
    14161 caatactctt tttcaaaatt gaccgcataa taaggaatac cgatttgatt ggctacgcga
    14221 atcacatcat cataatcctc cgttgctgta caaacgccaa attcgtccgt atcatcccaa
    14281 tttttcataa agatgccaat aacatcataa ccttgttctt ttaatatatg agcagtgact
    14341 gatgaatcta ctccgcctga catgccgaca actacacgaa tgtcactatt atttgtactc
    14401 aaagttcgct cctcaccttc ttatattttc attaaacgcg ttactacttc actaattttc
    14461 gtagccgcca tttccacttc ttctaaatgg tttcctagtc caaaactaat ccgaacggtc
    14521 tcttgaatcg ctgggtgatt ttcaccaaaa agagctacta atacatgcga tggatctact
    14581 gttcccgccg tacaagccga accactagaa actgcaattc cgtccatatc taaattcatt
    14641 aataattgtt caatcgaaac tcctggaaaa cgcacactaa atacatgtgg caaggtattg
    14701 gcttctaatc cattcacttc aaaatcaaga tctgccgaac gccaaatttc tgccattcgt
    14761 tttttgaagg aaatatattc ctcatttttt agctctcgtt cattcatcat gatagaagaa
    14821 gcagcactaa aaccacagat tcccgctaga ttctccgttc cagcgcgacg ttttcgttct
    14881 tgttctccgc cgtgcatttg gtagataagc cgtgtgccat ttttgacgta taaaaaacct
    14941 acgccacgtg gtccatttat tttatgagaa gaagtagtta ataaatcaac ccctagctcc
    15001 gttacattta tatttaatag cccataagct tgtactgcat ctgtatgaaa aattgcttga
    15061 tgattgcgca acactgcacc aatctccgca atcggttgaa tcgtgcctat ctcattattt
    15121 ccatacataa tagaaactag aattgtatct ggacgcaagg cctcttgtaa actctctata
    15181 gatactattc catgctcatc tactggcaaa taggtaactt caaatccttg cgtttcaagg
    15241 tattcacatg tttttaagac agcgtgatgc tcaatttgag aagtaataat atgtttacca
    15301 ctttcttgct gtgctaaagc tgctccaata atcgccaagt tatcgccttc tgttccacca
    15361 cttgtaaaaa ttatttcttt ttctatagca tggatactat ctgcaattgt atgacgagct
    15421 tcatccaaag cttttcttgc ctctcgtcca gcgtaatgga tactggaagg attgccgtac
    15481 gtatttgtaa ttgcgccaag cattgtttgg ataacttctg gatgaattgg acttgtcgca
    15541 gcatggtcta agtatattct attttccatt ttttatcgcg tccttttttg tagacgaatt
    15601 cctgttcgcc gttaatcgtt tcttattgta acagcaatac tcctgtaaag taaagaggaa
    15661 taactcctat ttacacgcaa aaaagaaacc ccaatcgtac cgtttaggat tcccttcctt
    15721 tgaacccgct atcaattaaa gcaggtgggt gctctgtcta acggtttgca cttcctcgtg
    15781 tgaaggcatg tgcgccgcgc cggaactcca agctccctag gtataaaaaa ttgttcggtt
    15841 caaaaatatt aggaactata tcgaatacat tagggtttct tttcttcatt tagaatacca
    15901 tagaaaagac gaaatttcaa tgttagcgac ttttcatttg gcactttttt tattcttttt
    15961 ttgctttatt ttcgttaatt ttttgataca caccagcaat tgtctgctca aatttagaag
    16021 tgaatttcgg cgcataatac aatttgtttt taagacgatc tggtaaatat tgttgatcca
    16081 cccaagcgtt atcataatta tgtggatatt tataatcaat cgctcgtcca agtttttctg
    16141 caccagaata atgtccatct cgcaaatgat ctggcacttc tccacttttt ccttggcgaa
    16201 tatctgctag tgccgcatca atcgccataa tagcagaatt ggatttaggc gaaaggcaaa
    16261 gctcgatgac agcattggcg agcggaattc tcgcttcagg aaacccgact ttttctgcgg
    16321 tttgaatggc tgcgagtgta tgcgccccgg cctgtggact cgcaagacca atatcctcat
    16381 atgccataac gagcattctc cggctaatac tgactaaatc tcccgcctca attaaacgtc
    16441 ccatataatg gagtgccgca ttcacatcgc taccacgaac cgatttttga aaagcactta
    16501 atacatcata atgggcatcg ccgtctttgt catgggctaa acttttcttt tgtaaacact
    16561 cctctgccac atcgagcgta atatgaatca caccatcctc atttggttca gaagaaatga
    16621 cagctaactc taaggcattc agcgcacttc gcacatcgcc gttactcgcc gttgcaaaat
    16681 gttttttcgc aacctcatct atttctacat cataattccc aagcccgcgt tctttatctg
    16741 aaagcgcccg gtccattgtt atcataatat cttctaccgt tagaggtttt aactcaaaaa
    16801 tttgcgttcg gcttcgaata gccggattaa tcgcgatata aggattactt gtcgttgcac
    16861 ctattaagat aatcgcgcca ctttcaagta atggtaataa aaaatcttgt ttcgctttat
    16921 ccaaccgatg tacttcatct aaaagaagaa taaccgtgcc gctcattttc gcctcggctg
    16981 ctacaacttc catatctttt ttattattgg taactgcatt taatgtacgg aatgcatatt
    17041 ttgtacttcc agcaatcgca cttgcaatcg aggtttttcc aattccgggc ggcccgtata
    17101 atatcataga agataattgt tttgctttga ccatccgata aataatttta tctttaccga
    17161 ctaaat
//
LOCUS       DASEAA010000044        16961 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.044, whole genome shotgun sequence.
ACCESSION   DASEAA010000044 DASEAA010000000
VERSION     DASEAA010000044.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16961
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.044"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            180..1286
                     /gene="qoxA"
                     /locus_tag="U0342_001242"
     CDS             180..1286
                     /gene="qoxA"
                     /locus_tag="U0342_001242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit II"
                     /protein_id="HEM2422592.1"
                     /translation="MSKVLKSLLLTALLGVTGLISGCGDLTVLNPKGPVAKGQSDLII
                     YSIIFMLVIVLTIFVLFTIMLVKYRERKDISNYEPDMHGSKKLEIFWTLIPVAIVIAL
                     AIPTVKTIYAGEEAPKVTSHKDPIVIYATSADWKWIFSYPDESIETVNYVNIPTDRPV
                     LFKLTSADTMTSFWVPQLGGQKYAMSGMTMNLYLQADEVGTYKGRNANFNGEGFADQR
                     FDVVAQSEKDFKKWAKETKASSPVITQDIYDRLLIPGSSKKKTYSGTHLAFVDVAADP
                     EYVFYAYKRFGYEMTNPHNPNTKSTISDEPMLPVRPVTVTNPQFERHDMKPQIIKNGE
                     GYHEDKHREDEMKKMEEDIQTNEFNKKESDDAGK"
     gene            1305..3284
                     /gene="qoxB"
                     /locus_tag="U0342_001243"
     CDS             1305..3284
                     /gene="qoxB"
                     /locus_tag="U0342_001243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit I"
                     /protein_id="HEM2422593.1"
                     /translation="MKWNEFIVTGDPMILGAQISIVLVSIGVVALLTYTKKWKWLMKE
                     WISSVDHKKIGIMYLLAAVLMFFRGGVDALMMRTQLALPDMKFLDAQHYNEVFSTHGT
                     IMILFMAMPFIIGLMNIAVPLQIGARDVAFPFLNNLSFWTFFMGAMLFNLSFVIGGSP
                     DAGWTNYAPLATDFSAGYGINFYLLGVQIAGIGTLMTGINFFVTILRMRTKGMTLMKM
                     PMFTWSSLITSLIIIFAFPVLTVALALMSFDRLFGTAFFTLTNGGLPMMWANLFWVWG
                     HPEVYIVILPAFGIFSEIISTFSRKKLFGYPAMVAAMAVISLLSFLVWVHHFFTMGSG
                     ALVNSFFSITTMMIAIPTGIKIFNWLFTMYKGRITFTTPMLWSLAFIPNFVVGGVTGV
                     MLAMAAADYQYHNTYFLVSHFHYVLIAGTVFSCFAGLTYWYPKMVGYRLNEKIGKWFF
                     WIFVVGFNVCFFPQYFLGLDGMPRRIYTYVQGDGWTTLNFISTVGGFLMGVAFLVLCY
                     NIYYSYKNSKREVTGDPWDARTLEWATSSAVPPKYNFAVLPEWNDLDDFWNRKQKGDP
                     YVNDKNYKPIHMPSNTMVGFVMSVFFFIAGFGLVFYWYWMGIIGLVGILGCMIYRSFQ
                     NNDGYHVEVDEIKATEEHNARELATGVKEGNPWNL"
     gene            3272..3883
                     /gene="qoxC"
                     /locus_tag="U0342_001244"
     CDS             3272..3883
                     /gene="qoxC"
                     /locus_tag="U0342_001244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit III"
                     /protein_id="HEM2422594.1"
                     /translation="MESVETNKNLPIEYRSEQGRLNILGFWIFLGAEIALFATLFATY
                     FVMRKAGSNAGHPPAEMFELWLVLIMTFLLLTSSFTCGLAIGEMRKGNVKMLTIYSII
                     TLILGAGFVGFELYEFAHYVTEGVTMQIGSYWSAFFVLLGTHGLHVTVGIFWISFILI
                     QIKMHGLTPKTASKVFISSLYWHFLDVVWIFIFTGVYLLGMVN"
     gene            3885..4217
                     /gene="qoxD"
                     /locus_tag="U0342_001245"
     CDS             3885..4217
                     /gene="qoxD"
                     /locus_tag="U0342_001245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytochrome aa3 quinol oxidase subunit IV"
                     /protein_id="HEM2422595.1"
                     /translation="MTQNNKSNAAHAEGGIPWKHIVGFALSVILTLLAVWVALYSTLT
                     TNVKVVIIFIFAFIQAALQLLMFMHMTEGRDGKIQIGNILFAAFIAIVVVIGSYWVME
                     IGHMNHLL"
     gene            complement(4269..5387)
                     /locus_tag="U0342_001246"
     CDS             complement(4269..5387)
                     /locus_tag="U0342_001246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CapA family protein"
                     /protein_id="HEM2422596.1"
                     /translation="MKSRKKGIILVLSIIIIFSIGLLVNNIMTNNKDTAKQKKKTVAA
                     VKKKKETPPKPKEPFNIDFTGDIMFDWDLRPVLAEKGMDYPFNNVREELKSSDYTFVD
                     LETAITTRTKKVPYQEFWIKSDPSSLTALKNAGVDMVNISNNHILDYYEDGLLDTTAA
                     LRANNLAYVGAGKNEDEAYQLKVADIKGNKVGFMSFCHFFPNTGWIADEDTPGVTNGY
                     DINLVEEKIKEERAKNKDIDYMVVYFHWGVEKTNTPVDYQTQYVKKLVDDHLVDAIVA
                     SHPHWLQSFEVYKDVPIAYSLGNFLFPDYVSGHSAETGIYKLNFNQGKVTAHFDPGII
                     SGNQINMLDGSAKTAQLNYLQSISPNATINSNGDISAK"
     gene            5613..7046
                     /gene="ascB"
                     /locus_tag="U0342_001247"
     CDS             5613..7046
                     /gene="ascB"
                     /locus_tag="U0342_001247"
                     /EC_number="3.2.1.86"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phospho-beta-glucosidase"
                     /protein_id="HEM2422597.1"
                     /translation="MTESKFPKDFLWGGAVAANQCEGAYLEDGKGLSLVDILPTVEDG
                     RWEALFNPSKALATDYGFYPSHESIDFYHRYKEDIKLMAEMGFKCFRMSISWPRIFPN
                     GDETTPNEKGLAFYDAVFDECHKYGIEPVVTINHFDTPLEVFKKYGGWKNRKCIDFYL
                     NFCEAIFTRYKDKVKYWMTFNEINMILHLPYIGGGLDVTKEDNPEEVKYQAAHHQLVA
                     SALATKLGHEINPENQIGCMLAAGNTYPMTCNPKDVWKSIEADREGYFFIDVQARGYY
                     PSYTKRFFKEHNINIKMEDGDLDVLRDHTVDYVAFSYYSSRLTSADPEKNKETEGNVF
                     ATLKNPYLKASEWGWQIDPLGLRITMNTIYDRYQKPLFIVENGLGAVDTVAEDGSITD
                     DYRIDYMREHVREMGEAIEDGVELLGYTPWGCIDLVSAGSGEMKKRYGFIYVDRDNKG
                     NGTLNRSKKKSFDWYKKVIETNGKDID"
     gene            complement(7093..7914)
                     /locus_tag="U0342_001248"
     CDS             complement(7093..7914)
                     /locus_tag="U0342_001248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEM2422598.1"
                     /translation="MGNSFSKWGKWILVLGLMFSVFSVSTAGQAAAKETVINKQMVTT
                     ASLNVRSTNSTSGKVIGWLKSNTKFKAIAKTSNNWYRFSLKGKNGYVSGKYVKAATAA
                     PAPKPSTPKIVQMNVPLIVQRPQLPTGCEITNIAMMLRYAGKNVDKVKLAKEMKRHKS
                     NPNYGFVGNPFSKSGWTIYPPALVNQVKKYTGSAKNMTGTNLAGIKNQLNKKRPVVAW
                     VSNFHGFSVHAITITGYDKNNFYYNDSWSGQKNARISQSYFNTCWSKQAKRAISY"
     gene            8155..8895
                     /locus_tag="U0342_001249"
     CDS             8155..8895
                     /locus_tag="U0342_001249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2422599.1"
                     /translation="MAEPKYAIIINDIKRLISDGTFKPGEKIYSEDELKKKYNVSNTT
                     VVRALHELVRAGILARYQGKGTYVSKSIINEEVIFNEYTTVPNGRFNRKTKITNEHTK
                     VVAINEIQDARIAKKLQIPPENMIVHFQRIRLIDDVPWTVQNNYMAKSNLINVDLTNF
                     ERFNSLSEVIKELYGINILHEAMKERIEVEFPVKDKNNFKLLEIDSELPLYHIERITY
                     VPEGQPYEYIESYLRHNFYSIEIEKKKQ"
     gene            8911..9312
                     /locus_tag="U0342_001250"
     CDS             8911..9312
                     /locus_tag="U0342_001250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2422600.1"
                     /translation="MNFIIAAHGRYAQEVKNSCQMITGQTTNISAITFTEEMGVTDVL
                     DAYTAVYSPVNETAIIVDIVGGTPCNAAQMFSTKHPEVKVVSGLSLGLLIPLSLGESL
                     EEAMLGAKENIQFVEQKASYTIVSDDGEEED"
     gene            9312..9800
                     /locus_tag="U0342_001251"
     CDS             9312..9800
                     /locus_tag="U0342_001251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2422601.1"
                     /translation="MGSNGIKHVRVDERLIHGQVATMWTNTIKATRIMIVDDAVVKNE
                     MEKVALKTAVPAGVKLSILTVKGAANNINNDKYAGQQVFLIVKSPHALRGLVDAGVEL
                     PQINVGNMSTKAGSRQIKKSVSVTDENLEDFDYLSQKGIKITAQMVPSEDAVEFASLL
                     KK"
     gene            9823..10626
                     /locus_tag="U0342_001252"
     CDS             9823..10626
                     /locus_tag="U0342_001252"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS
                     mannose/fructose/sorbose/N-acetylgalactosamine transporter
                     subunit IIC"
                     /protein_id="HEM2422602.1"
                     /translation="MDLAVWQIILLVILAACTILDALTLVIGLNFPVITGTLAGIIMG
                     DMVLGLAIGATLQLMVLGVGTYGGASIPDFTTGAIVGTVFAVLSGQDAEFAIGLAIPV
                     GLLMVQLDILARFTNTFFLHRIDSNIASGNISAVKRNIWYGALPWALSRAVPVFIMLT
                     FGQSVVDFILNEIPEWLMGGLRVAGGILPVVGIAILLRYLPTNKFVAYLIIGFVAAAY
                     LKVPMLGVALIGVALAIIYFKQNFKNPVAAGANGAALVGEENEDGEYED"
     gene            10601..11428
                     /locus_tag="U0342_001253"
     CDS             10601..11428
                     /locus_tag="U0342_001253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system mannose/fructose/sorbose family
                     transporter subunit IID"
                     /protein_id="HEM2422603.1"
                     /translation="MKMANTKTEQDFEKVLKRRDLIAANFRWLFASQICWNYERMMST
                     GYLYSILPTLRKLYKTDDDLKDMMNMHNQFFNTNPMVGGLILGMDMAIEEREKKASKE
                     VVTGLKTGLMGPFAGVGDTIFGVILPTIFGSIAAYMGLQGNVTGVVIWVLVNILVVGA
                     RFTLLPLGYKQGAKLVTEFADRLNALTDAAILLGVTVVGALIPTVIKATVPFVYKSGK
                     VELKMQDMLDQIMPSLVPVLLVALIYALLGHKKMTSTKAILLVMVIAIILFNLKILG"
     gene            11456..12160
                     /locus_tag="U0342_001254"
     CDS             11456..12160
                     /locus_tag="U0342_001254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar isomerase domain-containing protein"
                     /protein_id="HEM2422604.1"
                     /translation="MGLTFFDKARELTEELEKTQAESIHQAAKLVADSIMNDGIIQAF
                     GSGHSYAAAIEVCGRAGGLIPSKVIMDPAGGYYESIEGVGSLLTHRLQAKPNDIFFLI
                     SNSGRNPMGIELAEWIKSQGCKLIVVTALDASQTAASRHSSGKLLYEFADVILDNRSV
                     QGDAALELDGLEGKVCGTSSFSAVLLLQQTIYEAVELMLEKGYTPPVYRSANIDGGYE
                     YNFAIEDKFADRIFHF"
     gene            12215..12856
                     /locus_tag="U0342_001255"
     CDS             12215..12856
                     /locus_tag="U0342_001255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM2422605.1"
                     /translation="MILKEACIENTTNLVNVIEAGANRVELCDNLAEGGTSVSYGIAK
                     HVVKICHEQNVSVMAMVRPRKGNFVYTKEEISVMIDDILMYKKIAVDGVVFGCITDSG
                     LLDKPAIIELLKAAAGLEVTFHMAFDELVDSEKLPAIDWLAEQGVTRILTHGGDGAKL
                     PEETFIQWRKYIDYAAGRIIILPGGGIKSHNMEWITKETGAAEIHGTDLFGER"
     gene            13061..14965
                     /locus_tag="U0342_001256"
     CDS             13061..14965
                     /locus_tag="U0342_001256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM2422606.1"
                     /translation="MKYEQLAKDILKNVGGKENINSVFHCITRLRFKLKDENIANTKE
                     IEKLDGVISVIKSGGQYQVVIGNHVPDVFKAVLEVGGISAEGDEGSSAPATGNIFNRF
                     IDMISGVFTPVLGVLAATGMIKGFTAMFVAFGWITVTSGTYQLLYAIGDCLFYFFPIF
                     LGYTAMKKFGGNIFIGMAIGGALVYPTLAGITAGDPLYTLFAGTIFESPIHVTFLGIP
                     VILMSYASSVIPIIVATYFGSKVEKGFKKIIPDVIKTFVVPFCTLLIVVPITFIVIGP
                     IATWAGQLLGAGTIWVYNLSPIIAGLILGGFWQVFVIFGLHWGLVPVAINNLTVLGHD
                     PILAMTFGASFAQIGAVLAVFFKSRNKKIKSLSIPAFISGIFGVTEPAIYGVTLPLKK
                     PFIMSCIAGGIGGGIIGFAGSQTYIMGGLGIFGLPNFFKPGSGISGEFWWVVIAIVIS
                     FILGFILTYVVGFKDPADVVVEQSNTVEGETLIERETIPAPVVGEIVTLADVKDEAFS
                     SGALGKGVAIIPTVGRVVAPAAGTVTTIFPTGHAIGITTKDGAEVLIHIGMDTVQLEG
                     KFFTAHVKQGDVIEKGQLLTEFDIEGIKAAGYDVTTPVVVTNSNQYLDVMITDAKEAK
                     LEERLITLVI"
     gene            15047..15922
                     /locus_tag="U0342_001257"
     CDS             15047..15922
                     /locus_tag="U0342_001257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEM2422607.1"
                     /translation="MLAKGDLIGIICCSDGRKKEDEKDLKRLKQALEKEFGLQVVFAK
                     TIFQIDDSPFSGTPEERAAELMKLYQNMDVKMIFDISGGDAANQVLPYLNFNIIKKAA
                     KPFIGYSDLTVILNAIFAKTKQPGFNYLLRNLAGEASEIQRVQFQKTFFENQIAINGK
                     SLNEFEWSLGEIVGGNIRCFLKLAGTEFMPDVSNKIILLESLGGKEAKIASYVAQLEQ
                     LGVFSKCLGIVVGEHTEAEKNGEYDRIGILYQQIGLKYKLPVFRTKEIGHSSEAKPCL
                     IGTKVNVSRETLTNF"
     gene            complement(16071..16691)
                     /locus_tag="U0342_001258"
     CDS             complement(16071..16691)
                     /locus_tag="U0342_001258"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422608.1"
                     /translation="MTKTKFVIFIALTVITLLLFLVPKGIQYLKSQNPELLNTAESIK
                     LQAGEYTVGKDIKVGIYDMQVTKGSLSYYSTRLSKGDEIIGINLLDANKLYFEGSGEV
                     ELTPAEFNPIKPSANIFTIQHSGSYEVGKQIPAGKYSLTYTIDKSSKKKPFIQILPSY
                     TDDARIEIQFETKPAYNINLKTGEILTVSKTISEELDTMTVLLKKN"
     gene            complement(16684..>16961)
                     /locus_tag="U0342_001259"
     CDS             complement(16684..>16961)
                     /locus_tag="U0342_001259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2422609.1"
                     /translation="SPHIDKKVKKYSLGMKQRLNIAQAVFEKPAVILLDEPTNAIDDQ
                     GIELINQLLLEEKKRGATIIIASHHKEDIEPLCDMSIRMDQGKIIHD"
BASE COUNT         5253 a         2920 c         3516 g         5272 t
ORIGIN      
        1 ttctaaaaat gctgattaat ttttaaaaaa gtttgtgagt ttttttaaaa gaactaaata
       61 gtaaaagcat tttttcagtt acataggagt tctaacaagc ttctttcagc actccggtaa
      121 tggtattttt gcgcaaaaat acacattaga aaacatcaaa aggaaaagag gggattcggg
      181 tgtcaaaggt acttaaatct ttgctgctta cggcactact tggggttacc ggccttataa
      241 gtggttgtgg tgacttgacg gtacttaatc caaaagggcc agttgcaaaa ggtcagtcgg
      301 acttaattat ttattcgatt atatttatgc tggttattgt tttgacgatt tttgtattgt
      361 ttacgattat gttggttaaa taccgcgaac ggaaagacat ttcaaactat gagccggata
      421 tgcacggtag taaaaaactg gaaatttttt ggacattgat tccagttgca atcgttattg
      481 ctctagctat tccgactgta aaaacaattt atgcagggga agaagcacca aaagtgactt
      541 cgcataaaga tccaattgtt atttacgcaa caagtgcaga ctggaaatgg atttttagtt
      601 atccagatga gtcaattgaa acagtcaact atgtaaatat tccaaccgac cgtcctgtac
      661 tattcaaatt aacttctgca gatacgatga caagcttttg ggttccgcaa ttaggtggac
      721 aaaaatatgc gatgtctggc atgacgatga atttatattt acaagcagat gaagttggta
      781 cgtataaagg gcgtaacgca aatttcaacg gcgaaggttt tgcggatcaa cgctttgatg
      841 tagtagctca atctgaaaaa gatttcaaaa aatgggcgaa agaaacaaaa gcaagctcgc
      901 cagttattac acaagacata tatgatcgtc ttttaattcc tggaagctct aagaaaaaga
      961 cttattctgg tacgcattta gcatttgttg atgtagcagc tgatccagag tatgttttct
     1021 atgcctacaa acgttttggt tatgagatga caaatccgca taatccaaac acaaaatcaa
     1081 ccatttctga tgaaccaatg cttccggttc gtcctgtgac agtaactaat ccgcaatttg
     1141 agcgtcatga tatgaagcca caaattatta aaaacggcga aggttaccac gaggataaac
     1201 accgcgaaga tgaaatgaag aaaatggaag aagacatcca aacaaatgaa ttcaataaaa
     1261 aagaatcgga tgacgcaggg aagtaaaaag gggggacata aggcatgaaa tggaatgagt
     1321 ttatcgtaac tggcgaccca atgattttag gcgcgcagat ttctatcgta cttgtaagta
     1381 ttggtgttgt tgcgttacta acttatacaa aaaaatggaa gtggctcatg aaagagtgga
     1441 tttcttccgt tgatcataaa aaaattggta ttatgtactt gcttgctgct gtcttaatgt
     1501 ttttccgtgg tggtgtggat gcgctaatga tgcgtaccca gctcgcttta ccggatatga
     1561 aatttttaga cgcacagcat tacaatgaag ttttttctac acatggaacg attatgattt
     1621 tatttatggc gatgccgttt atcatcggat tgatgaacat tgccgtacca cttcaaattg
     1681 gtgcgcgtga tgtagcattt ccatttttaa acaacttaag tttttggacg ttctttatgg
     1741 gagcgatgct atttaactta tcattcgtaa ttggtggttc gccagatgct ggttggacaa
     1801 actatgcgcc acttgcgaca gattttagcg ctggatatgg aattaacttc tatcttctag
     1861 gtgttcaaat cgctggtatt ggtacgctga tgacggggat taactttttc gtcacgattt
     1921 taagaatgcg tacaaaaggt atgacgttaa tgaaaatgcc aatgtttact tggtcttcat
     1981 taattacaag tttgatcatt attttcgctt tcccagtttt aacagtggca cttgctttga
     2041 tgtcatttga ccgactgttt gggacagcat tcttcacact cacgaatggc gggctcccaa
     2101 tgatgtgggc caacttgttc tgggtttggg gtcatccgga agtatatatt gttattttgc
     2161 cagctttcgg tattttctca gagattattt ctactttctc gaggaaaaaa ttattcggtt
     2221 atccggcgat ggttgccgcg atggcagtta tttctttact aagtttccta gtttgggtcc
     2281 atcacttctt tacaatggga tcaggggcgc ttgttaactc cttcttctcc attacaacga
     2341 tgatgattgc gataccgacc gggattaaga tattcaactg gctctttacg atgtacaaag
     2401 ggcgaataac ctttacaacg ccaatgcttt ggtcgcttgc ctttatccct aactttgttg
     2461 ttggtggggt aactggggtt atgcttgcga tggctgcagc cgattatcaa tatcacaata
     2521 cgtacttctt agtatcccat ttccactacg tattaattgc tggaactgtg ttctcctgct
     2581 ttgccgggct tacatactgg tatccaaaaa tggtcggtta cagactaaat gaaaaaattg
     2641 gtaaatggtt cttctggatt ttcgttgttg gatttaacgt ttgtttcttc ccgcaatatt
     2701 tcctaggact agatggtatg ccgcgtcgta tttacactta cgtacaaggt gatggctgga
     2761 caacgcttaa ctttatctct actgtgggcg gattcttgat gggtgtagca ttcttagttc
     2821 tttgctacaa catctactac agctacaaaa actctaaacg tgaagttact ggtgacccgt
     2881 gggatgctcg tacgcttgaa tgggctacaa gttccgctgt tcctccaaaa tataactttg
     2941 ctgttttacc tgaatggaat gacttggatg atttctggaa tagaaaacaa aaaggcgatc
     3001 catatgtaaa tgataaaaat tataaaccaa tccatatgcc aagtaatacc atggttgggt
     3061 ttgtaatgtc tgtcttcttc ttcattgcag gtttcggact agtcttctac tggtactgga
     3121 tgggaattat tggcctagtt ggtattttag gatgtatgat ttatcgttca ttccaaaata
     3181 acgatggtta ccacgttgaa gtggacgaaa ttaaagcaac agaagaacat aatgcgcgcg
     3241 aacttgcgac tggtgtgaag gagggtaacc catggaatct gtagaaacaa ataaaaatct
     3301 gccaattgaa tatagatcag aacaaggtcg attaaatatt cttggattct ggattttcct
     3361 tggcgccgaa attgcattgt ttgcaacgct ttttgcgact tactttgtta tgagaaaggc
     3421 tggctcgaat gcgggtcatc cgccagcaga aatgttcgaa ctttggctag tgctaataat
     3481 gacattttta cttttaacaa gtagttttac gtgtggttta gcaattggtg agatgcgtaa
     3541 aggcaatgtg aaaatgttga cgatttactc gattatcaca ttaattcttg gtgcgggatt
     3601 tgttggcttt gagctttatg aatttgcaca ctatgtgaca gaaggcgtta caatgcaaat
     3661 cggttcttac tggtcggcat tcttcgttct actaggaaca catggacttc acgtaacggt
     3721 cgggattttc tggattagtt ttattctgat tcaaattaaa atgcatggtt tgacgccaaa
     3781 aacagcatca aaagtattta tttccagttt atactggcat ttcttggatg ttgtgtggat
     3841 tttcattttc accggtgtct atttgctagg gatggtgaac taatatgaca caaaataata
     3901 aatcaaatgc agctcatgct gaaggtggca ttccttggaa acatattgtt ggctttgcgt
     3961 tatcagttat tttgacgctt ctagcagtct gggtggctct ttattcgacg ctaacaacaa
     4021 atgttaaggt agttattatt ttcatctttg cgttcattca ggcagcccta cagcttctga
     4081 tgttcatgca tatgacagaa ggccgcgatg gtaaaattca aatcggtaat attttattcg
     4141 ccgcatttat cgcgattgtc gtagttattg gttcttattg ggtaatggaa attggccata
     4201 tgaatcattt gttataaaaa ataagctgat gcttagaacg gttaaaaccg aactagcatc
     4261 agcttttttt attttgcgga tatatcacca ttactattaa tagttgcatt tggagaaatg
     4321 gattggagat aatttaattg tgctgtcttg gcagaaccgt caagcatatt aatttgatta
     4381 cctgaaataa taccaggatc aaaatgcgca gtcactttac cttgattaaa attcagttta
     4441 taaatacctg tttctgctga atgaccagaa acatagtcag gaaacaagaa attacctaat
     4501 gaataagcaa ttggaacatc tttgtatacc tcaaaacttt ggagccagtg tggatggcta
     4561 gcaacaatcg cgtcaactaa atgatcatcc acgagttttt taacgtattg ggtttgataa
     4621 tctacaggtg tattcgtctt ttcaactccc cagtgaaaat agacgaccat ataatcaata
     4681 tctttatttt ttgcgcgttc ttctttgatt ttttcttcga ctaaatttat atcataacca
     4741 ttagtaaccc caggagtatc ttcatcggca atccaaccag tatttgggaa aaagtggcaa
     4801 aacgacatga atccaacttt attacctttg atgtcagcaa ctttaagttg ataggcttca
     4861 tcttcatttt taccggcgcc aacataggct aggttattgg cgcgtaaagc agccgttgtg
     4921 tcgagtaatc catcttcgta atagtctaaa atgtggttat tactaatatt aaccatatca
     4981 acccctgcat ttttaagagc tgttaaagaa ctaggatcac ttttaatcca aaattcttgg
     5041 taggggactt tttttgttcg agttgtaata gctgtttcta aatcaacaaa tgtatagtcg
     5101 cttgatttca attcctcgcg aacattatta aaaggataat ccattccctt ctctgctaaa
     5161 acggggcgta aatcccaatc aaacataata tcacctgtaa aatcaatgtt aaatggttct
     5221 tttggttttg gaggtgtttc ttttttcttt ttaacagcag cgacggtttt ctttttttgt
     5281 ttagcggtat ctttgttatt tgtcatgatg ttgttcacta ataaaccgat ggaaaaaatt
     5341 ataataatag acagtaccaa gataatccct ttttttcttg atttcatttt ttctcctcct
     5401 aaattaaaaa gttatctaat tctatcagta tggagaaaag ggtttttatc aaaaataggc
     5461 ttttttttgg attttaatgg ctaaattgtg aactttaaaa tcataaaatg gaaaatgaat
     5521 ttaaaaaatt tgaaattatt gcttgctatg taatgcatta catattctat agtggaaaag
     5581 taaattatat tcgtgagagg agatatacaa aaatgacaga atcaaaattt cctaaagact
     5641 ttttatgggg cggagcagtt gctgccaacc aatgtgaagg agcttatctt gaagacggta
     5701 aaggactttc acttgttgat atccttccaa cagtagagga cggacgttgg gaagctttat
     5761 tcaatccatc gaaagcgctt gctacagatt atggttttta cccaagtcac gaatcaattg
     5821 atttttatca tcgttataaa gaagacatta aattaatggc tgaaatggga ttcaaatgtt
     5881 tccgtatgtc catcagttgg ccacgtattt tcccgaatgg tgatgaaacg acaccaaatg
     5941 aaaaaggttt agcattttat gatgcagttt ttgatgaatg tcacaaatat ggtatcgaac
     6001 cagttgttac aatcaaccat tttgatactc cgctagaagt tttcaaaaaa tatggtggtt
     6061 ggaaaaatcg taaatgcatc gacttttact tgaatttctg tgaagcaatt ttcacgcgtt
     6121 ataaagataa agtaaaatat tggatgacat ttaatgaaat taacatgatt cttcatcttc
     6181 catacattgg tggaggttta gacgttacta aagaggataa tccagaggaa gttaaatatc
     6241 aagctgctca tcatcaatta gttgcatcag cacttgcaac taaacttggt catgaaatca
     6301 atcctgaaaa tcaaatcggt tgtatgcttg cagcgggtaa cacatatcca atgacttgta
     6361 atccaaaaga tgtctggaag tctatcgagg cggaccgtga aggctacttc ttcattgatg
     6421 ttcaagcacg cggatactac ccaagctaca ctaagcgttt cttcaaagaa cacaacatca
     6481 acatcaaaat ggaagatggc gatttagacg tattacgcga tcacacagtt gattacgtgg
     6541 cattcagcta ctattcttct cgtctaacaa gcgcagatcc agagaaaaac aaagaaacag
     6601 aaggcaacgt tttcgcaaca ctaaaaaacc catacctaaa agcaagcgaa tggggttggc
     6661 aaattgatcc actaggtcta cgtattacta tgaatacaat ttacgaccgt tatcaaaaac
     6721 ctcttttcat cgttgaaaat ggcttaggtg cagtggatac tgtggcagaa gacggctcaa
     6781 tcactgatga ttacagaatc gactacatgc gtgaacacgt tcgcgaaatg ggcgaagcaa
     6841 ttgaggatgg cgtggaactt cttggttata caccatgggg ctgcatcgac cttgtcagcg
     6901 ctggctctgg cgaaatgaaa aaacgctacg gcttcatcta cgttgaccgc gataataaag
     6961 gcaacggaac cctaaaccgc tcgaagaaaa aatcattcga ctggtacaaa aaagtaattg
     7021 aaacaaatgg taaagatatc gactaatata tcagaaatcc ccactttcat catcgaaagt
     7081 ggggatttta ttttaatatg aaatcgcgcg ttttgcttgt ttgctccaac aagtattaaa
     7141 ataactttgc gaaattcgtg catttttttg accggaccag ctgtcgttat agtaaaaatt
     7201 atttttatca taacctgtaa tagtaatcgc atgaacggaa aaaccatgga aattactaac
     7261 ccaagctaca actggacgtt ttttattcaa ctgattttta ataccagcta aatttgttcc
     7321 agtcatattc ttcgcgctcc cagtatattt tttaacttga ttaactaaag ccggtggata
     7381 aatcgtccag ccactcttag agaatggatt tccaacaaaa ccataattcg gattggattt
     7441 atgacgtttc atttctttgg caagtttgac tttatcgaca tttttcccag cgtagcgcag
     7501 catcatcgca atgtttgtaa tctcgcagcc agttggcaat tgtggacgct gaacgattaa
     7561 aggcacattc atttgcacaa tttttggcgt tgaaggtttt ggtgccggcg cggcagttgc
     7621 ggccttgacg tatttcccag atacgtagcc attttttcct ttcaaactaa atcgatacca
     7681 gttattcgat gttttagcaa tcgctttgaa ctttgtattg ctcttaagcc aaccaataac
     7741 tttcccagaa gtcgaattag ttgaacgaac atttaggctt gcagttgtta ccatttgctt
     7801 gttaatcaca gtctcttttg ccgccgcctg accagctgta gaaacactaa aaacgctgaa
     7861 cattaaccca aggacaagta tccatttccc ccatttacta aaagaattcc ccattatatc
     7921 cccctttgat acagattact tatgtatacc ctattttgga aaaataaaaa gaaaacgctt
     7981 gcataaatga aatggccgtg gtactataaa aatgaactta acgtgttaac cggttattaa
     8041 tttaaagttc agtgatagca ggctaattca agtttgcaat caaaaaatta tcatggtacc
     8101 attaacctaa aacttaacgt gttaacgcgc gggatgcttt agggggaatt tgttatggcg
     8161 gaaccaaagt acgctattat tatcaatgat atcaagcgat taattagtga cggaactttt
     8221 aagccagggg aaaaaattta ttcggaagat gaactgaaaa agaaatacaa tgttagtaat
     8281 acgacagttg ttcgagcatt acatgaatta gtacgagctg ggattttagc tcgttatcaa
     8341 ggaaaaggca catacgtgag taagtctatt attaacgaag aagttatttt taatgaatat
     8401 acgacagtgc cgaacggaag attcaatcgt aaaacaaaaa ttactaacga acatacaaaa
     8461 gtagttgcaa taaatgaaat tcaggatgcg cgaattgcta aaaaattgca gattccccct
     8521 gaaaatatga ttgttcattt tcaacgaatc cgccttattg atgatgtgcc ttggaccgta
     8581 caaaataact atatggcaaa atccaatttg atcaacgtag atttaaccaa tttcgaaaga
     8641 tttaattctt tatctgaagt aattaaagag ctttatggta ttaatattct gcacgaagcg
     8701 atgaaggagc gaattgaagt cgaatttcca gtaaaagaca aaaataattt taaattactc
     8761 gaaattgact ccgaattacc gctttatcac attgaaagaa taacctatgt gccagagggg
     8821 caaccctatg aatatattga aagctacttg cggcataatt tttactctat tgaaattgaa
     8881 aagaaaaaac aatagaaggg agttaattac ttgaatttta ttatcgcagc acatggccgg
     8941 tacgcacagg aagtgaaaaa tagctgtcag atgattactg gccaaacaac taatatctca
     9001 gcaattactt ttaccgaaga aatgggggtg acggatgtat tagacgccta cacggccgtt
     9061 tattcacctg taaatgaaac cgctatcata gttgatattg ttggtggaac tccgtgtaat
     9121 gcggctcaaa tgtttagtac aaaacatcca gaagttaaag ttgtatcagg tttgtcgcta
     9181 ggattactca ttccacttag ccttggagaa agtttagagg aggcgatgct tggagcaaaa
     9241 gaaaatattc aatttgtaga gcaaaaagcg agttatacga tagtaagtga tgatggggag
     9301 gaagaggact gatgggaagc aacggaatta aacacgtacg cgtagatgag agactaattc
     9361 acgggcaagt agcaacaatg tggaccaata ctataaaagc aacgcgaatc atgattgttg
     9421 acgatgcggt tgtaaaaaat gaaatggaaa aagttgcctt aaaaaccgca gtaccggctg
     9481 gtgtcaaact aagcattctg accgtaaaag gtgcagcaaa taatatcaat aatgataaat
     9541 acgcagggca gcaagttttc ttaatcgtaa aatcacctca tgctcttcgc ggtttagtag
     9601 atgcgggggt agaacttccc caaatcaatg ttggaaatat gtcgactaaa gcagggagcc
     9661 gacaaatcaa aaaatcagtt agcgtgacgg atgaaaattt ggaagatttc gattacttgt
     9721 ctcaaaaagg cattaaaatc actgcccaaa tggttccgag tgaagatgcg gttgaatttg
     9781 caagtttatt aaaaaaataa gtgataagaa gggagaacta caatggattt agcagtttgg
     9841 cagattatat tgttagttat actcgcagct tgtaccattc ttgatgcttt aactttagta
     9901 ataggactta atttccctgt aataacagga acgcttgctg gaatcattat gggtgacatg
     9961 gtgctcggac ttgcgattgg ggcaacttta cagctgatgg ttctaggtgt tggtacatac
    10021 ggcggagcgt cgattcctga ctttacaacg ggagcaatcg tcggcacagt atttgccgtt
    10081 ttatcaggtc aggatgcgga atttgcgatt ggacttgcaa ttccagtggg acttttaatg
    10141 gttcaattag acattttagc aagatttacg aatacatttt tcttgcaccg cattgattct
    10201 aatattgctt cgggcaacat ttcggcggtt aaaaggaaca tttggtatgg ggcgctacca
    10261 tgggctttat cacgcgcggt tcccgtattt atcatgttga ctttcggaca aagcgtggtt
    10321 gattttattc taaatgaaat tccagagtgg ctaatgggcg gccttcgtgt agctggtgga
    10381 attcttccgg tagttggtat tgcgattctc cttcgttact taccaacaaa caaattcgtc
    10441 gcttatttaa ttatcggatt tgtagcagcg gcttatctaa aagtaccgat gctaggcgtg
    10501 gcactaattg gcgtggcttt ggcaatcatt tactttaaac aaaatttcaa aaatccagtg
    10561 gctgccggag caaatggcgc agcgctagtt ggggaggaga atgaagatgg cgaatacgaa
    10621 gactgagcag gattttgaaa aagtactcaa gagacgcgat ttaatagcag caaactttcg
    10681 ttggttgttt gccagccaaa tatgttggaa ctatgagcga atgatgtcga ctggttatct
    10741 ttatagtatt ttgccaacgc ttcggaaact ttataaaaca gacgatgatt taaaagatat
    10801 gatgaatatg cataaccaat ttttcaatac gaatcctatg gttggtggtt tgatcttagg
    10861 aatggatatg gcgattgaag agcgcgaaaa gaaagcgtca aaagaagtcg taactggttt
    10921 gaaaacgggt ttgatgggac catttgctgg tgttggtgat acgattttcg gggttatttt
    10981 accgacgatt tttggatcaa ttgccgcata tatgggactt caaggtaatg tgacaggtgt
    11041 ggttatctgg gtattagtta atattttggt tgtgggagca agattcacct tacttcctct
    11101 aggatataag caaggtgcaa aactagtgac ggaatttgcg gacagactta acgcgttaac
    11161 cgatgcagcg attctgctcg gggtcacggt cgtcggggca ttaataccaa ccgtaatcaa
    11221 agcaactgtc ccattcgttt ataaatcagg aaaagtagag ctcaaaatgc aagacatgct
    11281 cgatcaaatc atgccatcac tcgttccagt tttactcgtg gcgctaatct atgcactttt
    11341 aggccacaaa aaaatgacat ctacgaaggc tattttatta gtaatggtca ttgcgattat
    11401 tttattcaac ctaaaaattc taggttaaaa tataaaaatt ggaggaatag acaaaatggg
    11461 tttaacattt tttgacaaag cgcgtgaatt aacggaggaa ctagaaaaaa cacaggcgga
    11521 aagtattcat caagcagcaa aactggtggc agacagcatt atgaacgacg gaattattca
    11581 agcatttggt agtgggcact catatgcggc agctattgaa gtatgtggga gagcaggagg
    11641 actaattcca tcaaaagtta ttatggaccc agctggcggt tattatgaat cgattgaggg
    11701 cgttggttcc ttgcttactc atagattaca agcgaaaccg aatgatatat tcttccttat
    11761 atctaattca ggacgcaatc caatgggaat tgagcttgcg gaatggatta aatcacaggg
    11821 ctgtaaatta attgttgtaa cagcactcga tgcctcacaa acagcagctt caagacactc
    11881 ttctggaaaa ttgttgtacg agtttgcgga tgttatttta gacaatcgtt cagtccaagg
    11941 ggatgcggca cttgaattag atggattaga aggaaaagtt tgcggaacct cttcattctc
    12001 agccgttctg cttctccaac aaacaatcta tgaagcagta gaacttatgc ttgaaaaagg
    12061 ctatacacca ccagtttatc gtagtgcaaa tattgatggt ggctatgaat acaattttgc
    12121 gattgaagac aaattcgctg atcgtatttt ccacttctaa taaaaacgag cgcgaaaatg
    12181 aacattattt tcgcgctttt ttggaggata gaaaatgatt ttaaaagaag cctgtattga
    12241 aaatacaact aatctggtga acgttattga agctggagct aatcgagtgg agctttgtga
    12301 taatctagcg gagggcggaa cttctgtaag ttacgggatt gcgaaacatg tggtgaaaat
    12361 ttgtcatgaa caaaatgtaa gtgtaatggc aatggtccgt ccccgaaaag gcaattttgt
    12421 ttatacaaaa gaagaaattt cagttatgat tgatgacatt ttgatgtata agaaaatagc
    12481 ggttgatggc gtggtttttg gctgtattac ggattctgga ttgctagata aaccagccat
    12541 aattgaatta ttgaaagccg cagcaggtct ggaagtcact tttcatatgg cgtttgatga
    12601 gttagtagac tcggaaaaat tgccggcaat tgactggtta gctgagcaag gcgttacaag
    12661 aattctcaca cacggtggtg acggcgctaa acttcccgaa gaaactttta ttcaatggcg
    12721 aaaatatatt gattacgcag caggtcgaat cattatttta ccaggtggag gaattaaatc
    12781 gcacaatatg gaatggatta caaaagaaac aggagcagct gaaatacatg gcactgactt
    12841 gtttggggag cgctaaaact ccccaaataa atttatttaa aaaaaaagct tgcaaccgtt
    12901 ttctttatat gatatattta tctcatcaca aaggattgtt accaattcat tgggcaaaac
    12961 ctaagctgat ttgtaggaca cgtgtatgcg tggagtcctc gaatgagctt aggtttttct
    13021 ttttgcccaa aaaaccaaaa agaggaagga agtcgtcaaa atgaaatatg aacaattagc
    13081 aaaagacatc ttgaaaaatg tcggcggtaa agaaaatatc aatagtgttt tccattgtat
    13141 taccagactt cggtttaaac tgaaagatga gaatattgcg aacacaaaag aaattgaaaa
    13201 gcttgatggc gtaatctctg tcattaaaag tggtggtcaa taccaagtag ttatcggtaa
    13261 ccacgtacca gatgtattta aagcagtatt agaagttggc gggatttcag ctgaaggtga
    13321 cgaaggaagt agtgcaccag caacaggtaa tatcttcaac cgcttcatcg atatgatttc
    13381 tggcgtattt acaccagttc taggtgtatt agccgcaaca ggtatgatta aaggtttcac
    13441 tgccatgttt gtagcatttg gttggattac agttacttca ggtacgtacc aactacttta
    13501 tgcaattggg gattgtttat tctacttctt cccaatcttc ctaggttaca cagcaatgaa
    13561 aaaattcggc ggaaacatat ttatcgggat ggctataggt ggtgccttag tttatccaac
    13621 acttgcaggt attacagcag gtgacccact ttatacactt ttcgcaggaa caatttttga
    13681 atctccaatt cacgtaacat tcttaggaat tccagttatc ttgatgtctt atgcatcttc
    13741 tgttattccg attatcgtag caacatattt tggttccaaa gtagaaaaag gcttcaagaa
    13801 aatcattcca gatgtaatta aaactttcgt agttccattc tgtacattat taatcgtagt
    13861 tccaatcact ttcatcgtaa ttggcccaat tgctacatgg gctggtcaat tattaggagc
    13921 aggaacaatt tgggtttata acttaagtcc aattatcgcg ggtctaattt taggtggttt
    13981 ctggcaagta tttgttatct ttggacttca ctggggtctt gtaccagtgg caatcaacaa
    14041 cttaactgtt cttggacatg atccaatttt agcaatgaca tttggtgcat cttttgctca
    14101 aatcggtgca gtattagcag tattctttaa atctagaaac aaaaaaatca aatctcttag
    14161 tatcccagca tttatttccg gtatctttgg tgtaactgaa ccagcgattt acggtgttac
    14221 tttaccactg aaaaaaccat tcatcatgag ctgtatcgct ggtggtattg gtggcggaat
    14281 cattggtttt gcagggtctc aaacatatat catgggtgga cttggaatct tcggtcttcc
    14341 taacttcttc aaaccaggta gcggtatttc aggcgaattc tggtgggtag ttatcgcaat
    14401 cgttatcagc ttcatccttg gtttcatctt aacttatgta gtaggtttca aagatccagc
    14461 tgatgtagta gtagaacaat ctaacacagt agaaggcgaa actttaatcg aacgtgaaac
    14521 aattccagct ccagtagttg gcgaaatcgt aactttagca gacgtaaaag acgaagcatt
    14581 ttcatccggt gcacttggaa aaggtgttgc aatcatccca actgttggac gtgtagtagc
    14641 tccagcagca ggaacagtaa caactatctt cccaactggt catgcaatcg gtattacaac
    14701 taaagacggt gcagaagttt taatccacat cggtatggac accgttcaac ttgaaggtaa
    14761 attcttcaca gcacacgtga aacaaggcga cgtaatcgaa aaaggtcaat tactaactga
    14821 atttgatatt gaaggcatca aagctgctgg atatgacgtt acaactccag tagtagtaac
    14881 aaactccaat caatatttag acgtaatgat tacagatgca aaagaagcga aactagaaga
    14941 acgtttaatc acattagtaa tctaaaattc attaataaac agcttgggcg taaatctgct
    15001 caagctgttt ttatgttata ctgagggaaa aataggcggt gagcggatgt tagcaaaggg
    15061 cgatttgata gggataattt gttgttctga tggtcgaaaa aaagaagacg agaaggattt
    15121 gaagcgcctt aaacaagcct tagaaaagga atttggactt caggtggttt ttgcgaaaac
    15181 tatttttcaa atagatgatt cgccttttag tggtactcct gaggaacgag cagccgaatt
    15241 aatgaaacta tatcaaaata tggatgtaaa aatgattttt gacatttcag gaggggatgc
    15301 ggctaatcaa gtattaccat atcttaattt taacattata aaaaaagcag ccaaaccttt
    15361 tatcggctat agcgacttaa ccgtaatatt aaatgcaatt tttgcgaaga cgaagcagcc
    15421 tggctttaat tatttactgc gaaatttagc aggtgaagct agcgagatac aacgagtcca
    15481 attccaaaaa acatttttcg agaatcaaat tgcgataaat gggaaatccc ttaatgagtt
    15541 tgaatggagc ctgggtgaga tcgttggtgg aaatatccgc tgttttttaa aactagcagg
    15601 aacagaattt atgcctgacg tctcgaataa aataattttg ttagaaagtt taggtggaaa
    15661 agaggcgaaa attgcttctt atgtagcgca attagaacag ttaggtgtgt tttcgaaatg
    15721 cttaggaata gttgttgggg aacacactga ggctgagaag aacggggaat acgacagaat
    15781 aggaatctta tatcaacaga ttggattaaa atataagttg cctgtttttc gaactaagga
    15841 aatcggtcat agcagcgaag caaaaccatg tttaattggc acaaaagtta atgtttcacg
    15901 tgaaacatta acaaattttt aataatttta ttgcgaaata ttcataatta acctttaata
    15961 tagaacttgt aagcaaggaa tacaattagt tttactccct ttttgctaat tgtagaattc
    16021 cttaaaatcc taaactccct ttttggaccg acttgattgt cggtcttttt ttagttcttt
    16081 ttaagtaaga cggtcatagt atcaagttct tctgatattg ttttactaac agtcaagatt
    16141 tctcctgttt ttaaattaat attatatgcc ggtttggttt caaattgtat ttcaatacga
    16201 gcgtcatcag tataagatgg taatatttga ataaaaggtt ttttcttact acttttgtca
    16261 atggtataag tcaggctgta cttcccagct ggaatttgtt taccaacttc gtaagacccg
    16321 gagtgttgga ttgtaaaaat attggcagaa ggtttaatgg gattaaattc tgccggtgta
    16381 agctcgactt caccgcttcc ttcaaaatac agtttattag catctagtaa attaatacca
    16441 attatttcat cgcctttaga aagccttgta ctatagtaag atagcgaacc ctttgttact
    16501 tgcatatcat atattccaac ttttatatct tttccaacag tgtattcacc agcttgaagt
    16561 ttaatgcttt cagctgtatt caatagctca ggattttggc ttttgagata ttgaatacct
    16621 ttaggaacga ggaatagaag cagtgtaatg actgtcagtg ctatgaaaat aacgaatttg
    16681 gtcttagtca tggataattt tcccttggtc cattcggata ctcatatcac aaagtggttc
    16741 tatgtcttct ttatgatgac ttgcaataat aatagtggct ccgcgtttct tttcttctaa
    16801 aagtaattgg ttaattagtt caataccttg atcatctatc gcatttgtgg gttcatcaag
    16861 caagatgaca gcgggttttt caaaaacggc ctgtgcaata ttaagtcttt gcttcattcc
    16921 aagcgaatat tttttaactt ttttatcaat atgtggagat a
//
LOCUS       DASEAA010000045        16887 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.045, whole genome shotgun sequence.
ACCESSION   DASEAA010000045 DASEAA010000000
VERSION     DASEAA010000045.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16887
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.045"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            67..297
                     /locus_tag="U0342_001260"
     CDS             67..297
                     /locus_tag="U0342_001260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaI family protein"
                     /protein_id="HEM2422610.1"
                     /translation="MNAKCILCERVDELDNREFKTKQLRNKPIRMYLCPECEHRVAIN
                     TISRVNSGHFNFHKPVVMSNSELKNLIESAGK"
     gene            complement(329..1207)
                     /locus_tag="U0342_001261"
     CDS             complement(329..1207)
                     /locus_tag="U0342_001261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5068 domain-containing protein"
                     /protein_id="HEM2422611.1"
                     /translation="MMKKRIIILAVLVVLLIGGVVIGVYASGNSAKDNNESKTTAKKA
                     TSTPKKAIDTEKKETTTKEATTKDSVTDDKGVVTKGSSDVEKNAPAKNNSSATDKSNS
                     PTTPAFSLSSTGFKTSNVSSVLGGTVTTTYLSSAPSFEKIFENLTIEVNQYKVEHVVG
                     ANKAVSASNPESYLANKNGYVITLDISIKNTSAKDKMYKADQITLIGANEFVGGSLDN
                     FVPSNFHLIGSKADPNIFTAGKTARGLLTFTMTEAVYNDLAADSKIGVPNPDKFDASV
                     SEANAGDDVVASFPVK"
     gene            complement(1382..3220)
                     /gene="typA"
                     /locus_tag="U0342_001262"
     CDS             complement(1382..3220)
                     /gene="typA"
                     /locus_tag="U0342_001262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translational GTPase TypA"
                     /protein_id="HEM2422612.1"
                     /translation="MNLRNDIRNVAIIAHVDHGKTTLVDQLLRQSGTFRDNETVAERA
                     MDNNDLERERGITILAKNTAIKYEDTRVNIMDTPGHADFGGEVERIMKMVDGVLLVVD
                     AYEGTMPQTRFVLKKALEQNLTPIVVVNKIDRDFARPEEVVDEVLELFIELGANDDQL
                     EFPVVYASAINGTSSYDSDPAEQKETMKPLLDTIIEHIPAPVDNSDEPLQFQVSLLDY
                     NDYVGRIGIGRVFRGTMHVGQTVALIKLDGTVKQFRVTKMFGFFGLKRDEIKEAKAGD
                     LVALAGMEDIFVGETVTPFDHQEALPLLRIDEPTLQMTFVTNNSPFAGREGKHVTSRK
                     IEERLLAELQTDVSLRVEPTASPDAWVVSGRGELHLSILIETMRREGYELQVSKPEVI
                     IREIDGVKCEPVEDVQIDTPEEFMGSVIESISQRKGEMKNMINDGNGQVRLQFMVPAR
                     GLIGYTTDFLSMTRGYGIINHTFDSYQPIQKGRVGGRSRGVLVSMETGKSTTYGTMQV
                     EDRGTIFIEPGTDIYEGMIVGENNREGDIAVNIVKAKQMTNIRSANKDQTNVIKKPRH
                     LSLEESLEFLNEDEYCEVTPESIRLRKKILNKNEREKAAKRSKTAE"
     gene            complement(3412..4185)
                     /locus_tag="U0342_001263"
     CDS             complement(3412..4185)
                     /locus_tag="U0342_001263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inositol monophosphatase family protein"
                     /protein_id="HEM2422613.1"
                     /translation="MDSEKIDYLARLWIMEAAAKIKQSFKETLDIDVKSGRNDLVTNM
                     DKETEAFFVQQIKDHFPDHRLFGEEGMASDVTDLDGVVWILDPIDGTLNFVEQQRDFA
                     ISLAVYEDGIGQLAYIYDVARDELYFGEKGKGATVNGRTIPKLDPAIDLKDTLLIANL
                     SVTRKFPTMWEAVKASRGLRLHGAASLEYMDVATGRAGAYLSANLAPWDIAAGKIIVE
                     ELGGKVTRINGEKINMLEKGSSIVASPKIHQTLLDNYLP"
     gene            4316..4930
                     /locus_tag="U0342_001264"
     CDS             4316..4930
                     /locus_tag="U0342_001264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YktB family protein"
                     /protein_id="HEM2422614.1"
                     /translation="MTFKGFSKKDFKTMQIPGLEARMNGIQTDIQPKFRAVGEELTTY
                     LSAKLGDEMFLHIARHQRRSVNPPESTWLAICHDKRGYKKHPHFQVGLFDNYLFIWLA
                     FIYENEESAKIANRFLKEKKLLADLPDNFAISPDHTEEKTYPVHDGQLKATLERFRDV
                     KKGEFLVGKIYLPDDSHLSPGKDFIKEAEMVLDELIPLYKASLQ"
     gene            5131..6075
                     /locus_tag="U0342_001265"
     CDS             5131..6075
                     /locus_tag="U0342_001265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2422615.1"
                     /translation="MHQIFKSDENGKLIELEEVTRNCWINIVAPTSEEINKIADNYEI
                     PLEFLEDPLDKDESARIERDDDSDSVLIVCDFPVVDEDDIHYASFETIPMGIIITKDY
                     FITICTIDSSIVQSFIRNRIKGFYTHMKTRFALQILYMISTTFLRHLKRLNRQTDEIE
                     KELHESMKNKQLYDLMGIEKSLVYFVTALKSNKVVLDKMMRQNIVKMYEEDQDLLEDV
                     IIENRQGIEMAEVHSNILSGMMDAYASIISNNMNIVMKFLTSFTIILTIPTMVFSFYG
                     MNVKLPFMNTPMAWMLTLGFAFGIAGALAIVFWRRKFF"
     gene            complement(6133..6663)
                     /locus_tag="U0342_001266"
     CDS             complement(6133..6663)
                     /locus_tag="U0342_001266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DsbA family protein"
                     /protein_id="HEM2422616.1"
                     /translation="MDISQIKAEVVTPETGIHVGDQTAPVKVMSFVNLRCPFCREWNE
                     KSKDVLTEYIQAGKIELIIKPFDKEKESLQRGNVTHRYLDYSKPEETRETINKIYSKQ
                     DEWGSLTLPEVATYMESELGLTEQDNKAASEKIVAEANAANVVFVPTVIVGEHIFDEH
                     ISPEELRSLLDGELAK"
     gene            complement(6685..6957)
                     /locus_tag="U0342_001267"
     CDS             complement(6685..6957)
                     /locus_tag="U0342_001267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UPF0223 family protein"
                     /protein_id="HEM2422617.1"
                     /translation="MEYSYPLNPDWTTEEMTIVVQFLEAIERAYEKGIDTLELKEKYR
                     AFKQVVPAKGEEKRIGIDFEKASGYSAYKVMQLVKNATTSKIKMQP"
     gene            complement(6957..7910)
                     /locus_tag="U0342_001268"
     CDS             complement(6957..7910)
                     /locus_tag="U0342_001268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="malate dehydrogenase"
                     /protein_id="HEM2422618.1"
                     /translation="MPSKKKKIVVIGRSNLQNLYIHTVLFKKIPAEIYLIDDQAKTSV
                     QDFDYASYYHADATIHAGTFNECRNADIVVFFQEEMSNQLVSKEDNVTLIKEKVKKMM
                     ASGFRGIVLVATAESNVVAALIKRFSGLPVNQIITLGTMLATSYFQVEIAKLFKISPK
                     NVHGYIIGDNAEDVIPVWSRAFLGGKPILSYLAEEQKRISAEDLQNLTKMITKIPDFP
                     FENKDGCSFRFSTVTVLAELTEVVLRDEARVITVGVEVKDAYGLENPVFISVPAVIGA
                     EGVRELLELHLSDDEQKELKQIATKTTEKLEELQLNKGGIS"
     gene            complement(8039..8350)
                     /locus_tag="U0342_001269"
     CDS             complement(8039..8350)
                     /locus_tag="U0342_001269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003746788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422619.1"
                     /translation="MEKQTATWKKALFWFAYVVAGICFLLTIVAFIVGFIHHMHDTGG
                     WRSVIQILETPITGFVKMTGGYIGKGILEVIILIIVSYVLPIFFCFATHYLKVKRREM
                     A"
     gene            complement(8537..9940)
                     /gene="lpdA"
                     /locus_tag="U0342_001270"
     CDS             complement(8537..9940)
                     /gene="lpdA"
                     /locus_tag="U0342_001270"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464580.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM2422620.1"
                     /translation="MVVGDFPEERDTIVIGAGPGGYVAAIRAAQLGQKVTIIEKEYYG
                     GVCLNVGCIPSKALITIGHRFKEAGHSDNMGITADNVNLDFTKAQEWKGGVVNKLTSG
                     VKGLLKKNKVEMLEGEAFFVDDHSLRVIHPDSAQTYTFNNVIIATGSRPIEIPGFKYG
                     KRVLSSTGALALTEVPKKLVVIGGGYIGTELGGAFANLGTELTILEGGPEILPTYEKD
                     MVSLVKRNLKSKNVEMVTKALAKSAEETENGVKVTYEANGETKTIEADYVLVTVGRRP
                     NTDEIGLEQAGVKVTERGLVEVDKQGRSNVPNIFAIGDIVPGVPLAHKASYEAKIAAE
                     AIAGEKAENDYTALPAVVFSDPELATVGLTEKEAKEKGFDVKAAKFPFGGNGRALSLD
                     APEGFVRLVTRKEDGLVIGAQVAGMNASDIISEIGLAIESGITAEDIALTIHAHPSLG
                     ELTMEAAELALGRPIHM"
     gene            complement(9945..11579)
                     /locus_tag="U0342_001271"
     CDS             complement(9945..11579)
                     /locus_tag="U0342_001271"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyllysine-residue acetyltransferase"
                     /protein_id="HEM2422621.1"
                     /translation="MAYSFKLPDIGEGIHEGEIVKWFVQPGDKIEEDESLFEVQNDKS
                     VEEITSPVSGTIKEIKVAEGTVATVGQVLVTFDGVEGHEDDAEEESAAPKAESTESTP
                     APAQASGKGIFEFKLPDIGEGIHEGEIVKWFIQPGDKVEEDQSIFEVQNDKSVEEITS
                     PVDGTVKDILVSEGTVATVGQVLVTFEGDFEGEASHESTPESPAEEAELTNNDATSAP
                     VTGGNGTPSSKKDPNGLVIAMPSVRKYAREKGVNIAEVAGSGKNNRVVKADIDAFLNG
                     EQPAASTTTAQTEEKAAAPKAEKAAAKQPVASSDAYPETREKLTPTRRAIAKAMVNSK
                     HTAPHVTLMDEIEVTALMAHRKRFKEVAAEKGIKLTFLPYMVKALVATLRDFPVLNTT
                     LDDATEELVYKHYFNVGIAADTDHGLYVPVIKNADKKSVFQISDEINELAGKARDGKL
                     TADEMRHGSATISNIGSAGGQWFTPVINYPEVAILGVGRIAQKPIVKDGEIVAAPVLA
                     LSLSFDHRVIDGATAQKAMNNIKRLLNDPELLLMEV"
     gene            complement(11690..12667)
                     /locus_tag="U0342_001272"
     CDS             complement(11690..12667)
                     /locus_tag="U0342_001272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464578.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM2422622.1"
                     /translation="MAQKTMIQAITDALAVELEKDENVLVFGEDVGKNGGVFRATEGL
                     QEKFGEDRVFDTPLAESGIGGLAIGLALEGFRPVPEIQFFGFVFEVMDSVAGQMARMR
                     YRTGGTRTAPITIRAPFGGGVHTPEMHADNLEGLMAQSPGLKVVIPSTPYDAKGLLIS
                     AIRDNDPVIFLEHMKLYRSFREEVPEGEYTVEIGKAAVRREGTDVSIITYGAMVQESM
                     KAAEALEKDGVSVEVIDLRTISPIDVETIIASVKKTNRAVVVQEAQKQAGIAANIVAE
                     INDHAILSLEAPVMRVAAPDSVFPFSQAETVWLPNHNDIIERVKEVIAF"
     gene            complement(12670..13785)
                     /gene="pdhA"
                     /locus_tag="U0342_001273"
     CDS             complement(12670..13785)
                     /gene="pdhA"
                     /locus_tag="U0342_001273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464577.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate dehydrogenase (acetyl-transferring) E1
                     component subunit alpha"
                     /protein_id="HEM2422623.1"
                     /translation="MASKTKKAIIDVKKQFEAVHKQFELVQILNEKGEIVNPDLMPDL
                     TDDELVELMTRMVWTRVLDQRSISLNRQGRLGFYAPTAGQEASQLASHYALEKHDYIL
                     PGYRDVPQLIWHGLPLTKAFLFSRGHFVGNQFPEDLNVLSPQIIIGAQIVQAAGVALG
                     LKKRKKDAVVITYTGDGGSSQGDFYEGMNFAGAYHAPAIFVVQNNKFAISTPREKQSA
                     AETLAQKAVAAGIPGVQVDGMDPLAVYAVTKFARERAVAGEGPTLIETMTYRYGPHTL
                     SGDDPTRYRTKELDGEWELKDPIVRFRTFLEGKGLWNEEKENAVIDQAKEEIKVAIKE
                     ADATPKQTVTDLLKNMYETPTAPIKEQLAIYEAKESK"
     gene            14619..15170
                     /locus_tag="U0342_001274"
     CDS             14619..15170
                     /locus_tag="U0342_001274"
                     /EC_number="3.5.1.88"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464576.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide deformylase"
                     /protein_id="HEM2422624.1"
                     /translation="MLTMDDIVREGHPALREVATEVTFPLSDEEKKLGREMLEFLINS
                     QDEELAEKYGLRGGVGIAAPQLAVTKRFLAIHVHDEKDRLYSYVLYNPKIRSHSVQQA
                     CLSGGEGCLSVDREVPGYVVRSERVTIDAFDENGTPLKLRFKGYPAIVIQHEIDHLNG
                     IMFYDHINKENPSYLPPDVDVFG"
     gene            complement(15219..15773)
                     /locus_tag="U0342_001275"
     CDS             complement(15219..15773)
                     /locus_tag="U0342_001275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464575.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase"
                     /protein_id="HEM2422625.1"
                     /translation="MKQRIETEKFYPAYPVFVLTYLNEVGEPQMSTGSSSYTLGDSIV
                     IGVSAESNASKHLHAGQKFAVNFPNTEQLGLIEQGGFSSGKRNDKIKVHQIELTKSDS
                     GGVAYIDVCPIVLECTVIQTVSDMDYHTIFAKIDSRLFEKNLVDSDGHFIHEELDLVL
                     FSGDANERKFRQLDTKIETVGGHS"
     gene            15905..>16887
                     /locus_tag="U0342_001276"
     CDS             15905..>16887
                     /locus_tag="U0342_001276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464574.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ThiF family adenylyltransferase"
                     /protein_id="HEM2422626.1"
                     /translation="MERYDRQMRVKNIGKVGQKKLLTKTILIVGVGAIGSYAAEICAR
                     MGFGKLILIDRDYVELSNLQRQSLFTEQDALDKQAKAYAASKALQLINSDIEIEYIVD
                     DANATSLTPYAGAIDYILDCTDNFMTRDFLNQFCFSHQIPWIFTSCAGNYANLMPIIP
                     PDSACLHCLLGDIPQTNAASCDIIGVDGALIPIVAGMQVSLLTQMIINPDFKSNTYYQ
                     LDNWQFSFRSLEVKKRPDCSGCATGKMISEVPFSEQTVALCGRDTVQFRLPNKSNYHE
                     IKQMLTEQKIIYNENPALLSFQYEKFQFVIFKNGRVLLHGTENITEAKKTY"
BASE COUNT         4850 a         3315 c         3041 g         5681 t
ORIGIN      
        1 aaaaattcac ttttactcgc ctttttcgat aatcatgcta taatacttgt gtgaggtgaa
       61 gacaaattga acgcaaaatg tatcttgtgc gagcgtgtag atgagctaga caatcgcgaa
      121 tttaaaacaa aacaattacg taataaacct attagaatgt atctatgtcc tgaatgtgaa
      181 catcgagtag ctattaacac tatcagtcgc gttaattctg gtcatttcaa ttttcataaa
      241 ccagtagtaa tgtcgaatag tgagttaaag aatttaatag aaagtgctgg aaaatagaga
      301 aaatccgccc tttatcgggc ggattttttt attttactgg gaatgaggca actacatcat
      361 cgcctgcatt agcttcagaa acacttgcat caaatttatc aggatttgga acacctattt
      421 ttgagtcagc tgctaaatca ttgtacacag cttctgtcat tgtaaatgta agaagcccac
      481 gagctgtttt tccagcggtg aaaatatttg gatctgcttt acttcctata agatgaaaat
      541 tagaaggaac aaaattatct aagcttcctc ctacaaattc atttgctcct ataagtgtaa
      601 tttggtctgc tttgtacatt ttatcttttg cagaagtatt tttaatggaa atgtctaaag
      661 tgattacata gccgttttta tttgctaaat agctttctgg attacttgca ctaactgctt
      721 tattcgcacc aacaacatgc tctactttat attgattcac ttcaatcgtt aaattttcaa
      781 agattttttc gaatgatggg gcactcgaca aatacgttgt tgttacagtt ccaccaagaa
      841 cagaagatac attggaagtt ttgaagcctg tactagataa cgaaaaagcc ggtgtagttg
      901 gactattgct tttatctgtt gcactactat tatttttggc cggtgcgttt ttctctacat
      961 ctgagcttcc ttttgtgact acacctttat catccgttac ggaatctttt gttgtcgctt
     1021 ctttggttgt tgtttctttt ttctctgtgt caattgcttt cttaggtgta gatgtggctt
     1081 ttttagctgt tgttttgctt tcattgttgt cttttgcaga gtttccgctt gcataaacac
     1141 cgattacaac tcctccgata agaagtacca ctaatactgc aagaataatt atacgttttt
     1201 tcatcatact aaccaccttt tctacttact tctaatatac caaatagctt ttcatattac
     1261 aatagtgtta caaacacatt attttattcc cttttccagc aaattaaagc ataaaaaaac
     1321 caaatagttt ttaaaggata ttcctaccac ttaaaaacca tttggccgat tcaaatatat
     1381 attattcagc agtttttgaa cgttttgctg ctttttcacg ttcgtttttg tttaggattt
     1441 ttttacgtaa acggatggat tctggtgtta cttcacagta ttcatcttcg tttaggaatt
     1501 ctaatgattc ttctagtgat aaatgacgag gttttttgat tacgtttgtt tggtctttgt
     1561 tagcagaacg aatgttagtc atttgttttg ctttcacaat gtttacagcg atatcgcctt
     1621 cacgattgtt ttccccaacg atcatacctt cgtaaatatc cgtaccaggt tctataaaaa
     1681 tagtaccacg gtcttctact tgcattgttc cgtaagtagt agatttacct gtttccatgg
     1741 atacaagaac accacgacta cgtccgccaa cgcgtccttt ttggattggt tggtagctat
     1801 cgaatgtgtg gttgataata ccataaccac gagtcattga aaggaaatca gttgtataac
     1861 cgattaagcc acgagctgga accatgaatt gtaaacgaac ttggccgtta ccgtcgttaa
     1921 tcatgttttt catttcgcct ttacgttggc taatagattc aataacagaa cccatgaatt
     1981 cttctggagt atcaatttga acatcttcta ctggttcaca tttcacgcca tcaatttcac
     2041 ggatgattac ttctggttta gaaacttgta attcataacc ttcgcgacgc attgtttcga
     2101 tcagaatgga taaatgaagc tcaccacgac cagaaactac ccaagcgtct ggagaagctg
     2161 ttggttcaac gcgtaaagat acatccgttt gaagttctgc aagtaagcgt tcttcaattt
     2221 tacggcttgt tacgtgttta ccttcacggc ctgcgaaagg actgttattt gtaacaaaag
     2281 tcatttgcaa tgttggctca tcaatacgta aaagtggaag tgcttcttgg tgatcgaaag
     2341 gtgttactgt ttcaccaacg aaaatgtctt ccattcccgc aagtgctact aagtcacccg
     2401 cttttgcttc tttaatttcg tcacgtttta gtccgaagaa accgaacatt ttcgttacac
     2461 ggaattgttt tactgtgcca tcaagtttaa ttaaagcaac tgtttgtccc acgtgcattg
     2521 ttccacggaa tacgcggcca ataccgatac gaccaacata gtcattataa tcaagtaatg
     2581 atacttggaa ttgtaatggt tcgtcgctat tatcaactgg agccgggata tgttcgataa
     2641 ttgtgtctaa aagtggtttc attgtttctt tttgttctgc tggatcagaa tcatagcttg
     2701 aagttccgtt gattgcagaa gcataaacaa ctgggaattc taattgatcg tcgttcgcac
     2761 ctaattcgat gaataattct aatacttcat caacaacttc ttctgggcga gcaaaatcac
     2821 ggtcaatttt gtttactaca acgatcggtg ttaagttttg ttctagtgct ttttttagta
     2881 caaaacgtgt ttgaggcata gtaccttcat acgcgtccac tactaaaaga acaccatcta
     2941 ccattttcat gatacgttct acttctccac cgaaatcggc gtgtccaggt gtatccatga
     3001 tgtttacacg tgtatcttca tacttaatcg ctgtattttt cgctaaaatt gtaataccgc
     3061 gttctctttc taaatcattg ttgtccattg cgcgttctgc aactgtttca ttgtcgcgga
     3121 atgtgcctga ctggcgtagt aattggtcta ctagagttgt tttaccatgg tcaacgtggg
     3181 caataattgc tacattacga atatcatttc ttaaattcaa tcttgtttcc tcctaaatta
     3241 aaaatccaaa catttatcgt gaagattagc caaaagaaag aggaaaatag atttattttc
     3301 ctccgtcgct atcgtctcgt ttaaatcaac ttacctatta tagcatagct gagcggattt
     3361 ggcacgattt ttattttctg aaaacaagtt tttttatgtt gagcgctttc tttaaggcag
     3421 gtagttatct aataaggttt gatggatttt tggcgatgct acaatagaac ttcctttttc
     3481 taacatattg attttttcac cattaatccg tgtcactttc ccgcctaatt cttcgacgat
     3541 aatttttcca gcagctatat cccacggggc taaattagca gaaagatagg ctcccgctcg
     3601 tccagtagca acatccatat attccagtga agctgctccg tgtaatcgta atcctctaga
     3661 agcttttacc gcctcccaca tggttgggaa ttttcttgtc acgctcaaat tagcaattaa
     3721 tagcgtatct tttaggtcta ttgctgggtc aagtttaggg atagttctgc cgtttactgt
     3781 agcacctttt cctttttctc caaaatacag ctcatcgcgt gcaacgtcat aaatataagc
     3841 aagctgccct attccatctt cataaactgc aagtgaaatc gcaaaatcgc gttgctgttc
     3901 aacaaaattc aatgtcccgt caattgggtc aagaatccaa accactccat ctaaatctgt
     3961 tacatctgac gccattcctt cttcaccaaa taaacgatgg tcaggaaaat ggtctttaat
     4021 ttgttgaaca aaaaaagctt cggtttcttt atccatattc gtcactaaat catttcgacc
     4081 ggatttgaca tcaatgtcta gtgtttcttt gaaagattgt ttaattttcg ctgcggcttc
     4141 catgatccat aaccttgcta aataatctat tttttcgctg tccataaaca cacctcttcg
     4201 cactcttttt gtttatttta tcacaaaaat gaattatctg aatagaacaa gattctttca
     4261 cttagaactt aacttccgta taatgaaact atatgcaaaa ttaggaggaa aacagatgac
     4321 ttttaaagga tttagtaaga aagattttaa aacaatgcaa attcctgggc ttgaagcacg
     4381 tatgaacgga attcaaacgg atatccaacc aaaattcaga gctgttgggg aagaattgac
     4441 tacttattta agtgccaagc ttggcgatga aatgttttta catattgctc gtcaccaaag
     4501 acgttcagtt aacccacccg aaagcacttg gctggccatt tgccatgata aacgtggata
     4561 taaaaagcac cctcatttcc aagtgggtct attcgataat tatttattca tttggctcgc
     4621 ttttatttat gaaaatgaag aaagcgcgaa aatcgccaat cgcttcttga aagaaaagaa
     4681 attattggct gatttaccgg ataactttgc catttctcca gatcacacag aggaaaagac
     4741 gtatccggta cacgacggac aactaaaggc cacgcttgaa cgattccgtg atgtgaaaaa
     4801 aggagaattc ttagttggga aaatttatct accagatgat agccatttat ccccagggaa
     4861 agacttcatt aaagaggcag aaatggtcct tgacgagcta attccgctct ataaggcttc
     4921 ccttcaataa aagatgtaca aatgactata atctaggtat aatggtagag ttgtgaatta
     4981 ctatggtttg aaggagttga ggaacgtgaa aaaggagcag caaacagcaa gtgaccctgg
     5041 tccacatcga agtattcata caggtgattt ttcacgggaa cgaaactcta accgcgtgaa
     5101 atttacctgt taaaaaagga ggtaaaaagc atgcatcaaa ttttcaaatc agatgaaaac
     5161 ggcaaattaa ttgaattaga agaagtgacg cgcaattgtt ggattaatat tgttgctcca
     5221 acttccgaag aaattaataa aattgccgat aactacgaaa ttccactaga gttcttagaa
     5281 gatccactag ataaagatga aagtgcccgg attgaacgcg atgacgactc ggattccgtt
     5341 ttaatcgtct gtgactttcc ggtagttgat gaagatgata ttcattacgc ttcattcgaa
     5401 accattccaa tggggataat tattacaaag gattatttta ttacaatttg tacgattgat
     5461 tcttctattg tacagtcatt tattagaaac cgtattaagg gcttttatac acatatgaaa
     5521 acacggtttg cattgcaaat cttatacatg atttccacta ctttcttgcg tcacttaaaa
     5581 cgcttgaacc gtcaaacaga cgaaatcgaa aaagaactac atgaatctat gaaaaataaa
     5641 caactttatg atttaatggg gattgaaaaa agtttagttt actttgtaac cgcccttaaa
     5701 tcgaataaag tcgtacttga taaaatgatg cgtcaaaata ttgttaaaat gtacgaagaa
     5761 gatcaagact tattagaaga tgttattatt gaaaatcgcc aaggtattga aatggcggaa
     5821 gtccactcga atattttgag cgggatgatg gatgcctatg cttcaattat ctcgaacaat
     5881 atgaatatcg tgatgaaatt ccttacttct tttaccatca tcttgacgat tccaacgatg
     5941 gtgtttagtt tttacggaat gaacgtgaaa ttaccgttta tgaatacacc aatggcttgg
     6001 atgctgacgc tcggttttgc attcgggatt gccggagcgc ttgcgattgt attctggcgg
     6061 aggaaattct tttaaaaata aacaaaaagc gaatgtatta cctaaaattt taggccaata
     6121 cattcgcttt ttttatttag ctaattcgcc gtctagtaac gaacgtaatt cttcaggact
     6181 aatgtgctca tcaaaaatat gttcacccac aataacagtc ggtacaaaaa caacatttgc
     6241 cgcgtttgcc tcagcaacaa ttttttctga tgcagcttta ttgtcttgct ctgttaagcc
     6301 taactcggat tccatataag tagctacttc aggaagcgtt aggctacccc attcatcttg
     6361 cttactataa attttattga ttgtttcacg ggtttcttcc ggtttggaat aatctaagta
     6421 gcgatgcgtt acatttcctc gttgtaacga ttctttttct ttatcaaatg gtttaatgat
     6481 taattcaatt ttccctgctt gaatatattc cgttagaacg tctttggatt tttcattcca
     6541 ttctctacaa aatgggcaac gtaagttaac gaatgacatt acctttactg gcgcagtttg
     6601 atctcctacg tgtatccctg tttctggtgt tactacttct gctttaattt ggctaatatc
     6661 catgaaaaaa attcctcctc ttaattatgg ttgcattttt attttactag tagttgcgtt
     6721 ttttacaagt tgcatgactt tataggccga atagccactt gctttttcaa agtcgatacc
     6781 aatccgtttt tcttctcctt tggcagggac tacttgtttg aatgctcgat atttttcttt
     6841 gagctcaagc gtatctatgc ccttttcata cgctcgctca atagcttcta aaaattgcac
     6901 aacaatcgtc atttcttcgg ttgtccagtc tggatttagt ggataactgt attccattaa
     6961 ctaatccctc ctttgttaag ttgcaattct tccaatttct cggtggtttt tgtggcgatt
     7021 tgttttaatt ctttttgttc atcgtctgag agatgtaatt caagtagttc tctgactcct
     7081 tctgcgccaa tgacagctgg aacactaatg aagacaggat tttctaaacc atatgcgtct
     7141 ttcacttcaa caccaactgt gataactctt gcttcgtcgc gcaaaacaac ttcggttaat
     7201 tcagcaagaa cagttaccgt gctaaatcga aaagaacaac catctttatt ttcaaaagga
     7261 aaatctggaa ttttagtaat catttttgtt aaattttgta aatcctctgc tgagattctt
     7321 ttttgctctt cagctaaata acttaaaatt ggtttgcctc caagaaaggc tctactccat
     7381 acaggaatga catcttctgc attatcgcca ataatatatc cgtgtacatt tttagggcta
     7441 attttaaata atttagcaat ttccacttga aaataagacg tcgcaagcat ggtgccaagc
     7501 gtaataattt gatttacagg taagccggag aaacgtttaa ttaacgcggc aacgacatta
     7561 ctttcagctg tcgccactaa gacaattcct cggaaaccgc tcgccatcat tttcttcact
     7621 ttttctttga ttagcgtgac attgtcttct tttgaaacga gttgattgga catttcttct
     7681 tgaaaaaaga cgactatatc agcgttgcga cactcgttga aggttcctgc gtgaatggtc
     7741 gcatctgcat gataataact cgcatagtca aaatcttgta cgcttgtttt agcttgatcg
     7801 tctattaagt aaatctcggc tggtattttt ttaaaaagaa ctgtatgaat gtagagattt
     7861 tgtagattac ttctgccgat aacgacaatt tttttcttct tagatggcat atgcatctcc
     7921 tcctcatcaa gtctcttatt gttattttag catgcttccg aggcaaaaat aaaataactt
     7981 gaccacataa ataaaaagca atgctcattc gctttgcttt ttacaaaata atcttatttt
     8041 aagccatttc acgtcgtttt acttttaaat aatgcgttgc aaaacagaag aaaatcggta
     8101 atacataact aacgataatc agaataatta cttctaagat tcctttaccg atgtagccac
     8161 cagtcatttt gacaaagcct gtgattggag tttcgagaat ttgaataacg gaacgccatc
     8221 cacctgtatc atgcatgtga tgaataaatc ctacaataaa ggccacaatc gttaataaaa
     8281 aacaaattcc tgctactaca tacgcaaacc aaaatagagc tttcttccaa gttgctgttt
     8341 gtttctccat tttttcacct gattcaatta gatttgactt gttacattca cttgttacat
     8401 tatactcctt tttttctaaa acggatactt taaatatttc aaaaaatgaa ctaaaagagt
     8461 ttttgtgaaa tcacgcacta atttatatag ataaaaagcg gaaatatcca taaaggatac
     8521 ctccgcttta agttgattac atgtgaattg gacgacctaa agcaagttca gctgcttcca
     8581 ttgtaagctc tccaagggat ggatgagcat ggatagtaag cgcgatgtct tcagctgtaa
     8641 tacctgattc gattgctaag ccgatttctg aaataatatc agaagcgttc attccggcaa
     8701 cttgtgcacc gataactagg ccatcttctt tacgagtaac tagacgaaca aatccttcag
     8761 gtgcatctaa agaaagcgca cgaccgttac cgccgaatgg gaatttagca gcttttacat
     8821 caaagccttt ttcttttgct tctttttctg ttaaaccaac tgttgcaagt tctgggtcac
     8881 tgaaaacaac agctggaagt gctgtataat cgttttctgc tttttcgcca gcaattgctt
     8941 cagcagcgat ttttgcttca tagctagctt tgtgagctag aggaacacca ggaacgatgt
     9001 caccaattgc gaaaatgtta ggaacgttcg agcgaccttg tttgtcaact tctactaaac
     9061 cgcgttctgt tactttaacg ccagcttgtt ctaaaccgat ttcgtctgta tttgggcgac
     9121 gacctactgt cactaaaaca taatcagctt cgatagtttt agtttcaccg ttagcttcat
     9181 acgttacttt aacgccgttt tcagtttctt cagcagattt tgcaagtgct ttagtaacca
     9241 tttcaacgtt tttgcttttc agattacgtt taactaggga aaccatgtct ttttcgtatg
     9301 ttggtaagat ttctggacca ccttcaagga tagttagttc tgtaccaagg ttagcgaatg
     9361 ctccacctag ttctgttccg atatatccgc cgccaattac gactaatttt ttcggaactt
     9421 ctgttagtgc aagtgcacca gttgagctta atacacgttt accatatttg aaacctggga
     9481 tttcgattgg acgagatcct gttgcaatga ttacgttgtt aaatgtataa gtttgagcgg
     9541 agtcagggtg aatcacacgt aaggaatgat catccacgaa gaacgcttct ccttctaaca
     9601 tttcaacttt atttttctta agaaggcctt taacacctga tgtaagcttg ttaactacgc
     9661 cgcctttcca ttcttgtgct tttgtgaaat ctaagttcac gttgtctgct gtaataccca
     9721 tgttatcaga gtgtccagct tctttaaaac ggtgaccgat tgtgataagt gctttggaag
     9781 gaatacatcc cacgtttaag cacacaccgc cgtaatattc tttttcaata atggtaactt
     9841 tttgtccgag ttgtgcagct cggattgcgg ctacataccc acctgggcct gcaccgatga
     9901 ctatggtgtc tctttcttct ggaaaatcgc ctactaccat tttgttacac ctccattagt
     9961 aataattctg gatcgtttaa taaacgttta atattgttca ttgctttttg agcagttgcg
    10021 ccgtcaatta cacggtggtc aaagctcaag gaaagagcaa gtactggtgc tgctacaatt
    10081 tcgccatctt ttacgatagg tttttgagca atacgaccaa cacctagaat agcaacttct
    10141 gggtaattaa ttactggagt gaaccattgt ccgccggcag aaccgatatt agaaatagtt
    10201 gcggaaccgt ggcgcatttc gtcagcagtt aatttaccat cacgtgcttt tccagctagt
    10261 tcgttgattt catcagaaat ttggaatacg gattttttat cagcattttt aattactggt
    10321 acatataaac cgtggtctgt atctgctgcg ataccaacgt tgaagtaatg tttgtaaaca
    10381 agttcttctg tcgcatcatc taaagttgtg ttaagcactg ggaagtcacg aagcgttgca
    10441 acaagagctt tcaccatata aggtaagaaa gttagtttga tacctttttc ggcagccact
    10501 tctttgaaac gtttgcggtg agccataagt gcagttactt cgatttcgtc cattaaagta
    10561 acgtgtggag ctgtatgttt tgaatttacc attgcttttg caatcgcacg acgagttggt
    10621 gttaattttt cgcgtgtttc tgggtaagca tcggagcttg caactggttg ttttgctgct
    10681 gctttttctg cctttggtgc tgctgctttt tcttctgttt gagcagtagt tgttgatgca
    10741 gctggttgtt cgccgtttag gaaagcatca atatcagctt taactacgcg gttatttttt
    10801 ccagagcctg ctacttcagc gatattaacg cctttttcac gcgcatattt acgtacagaa
    10861 ggcattgcaa ttacaaggcc attaggatct tttttagatg atggcgttcc gtttccacct
    10921 gtaactggag cggaagttgc atcgttgttt gtaagttcag cttcttctgc tggagattct
    10981 ggagtagatt catgactagc ttctccttca aaatcgcctt cgaatgttac taatacttga
    11041 ccaactgttg ctactgttcc ttcgctaact aaaatatctt taacagttcc atctactgga
    11101 gaagtaattt cttcgacaga tttgtcgttt tgtacttcaa aaatggactg atcttcttct
    11161 actttatcgc ccggttgaat aaaccattta acaatttcac cttcatgaat tccttcacca
    11221 atatctggta atttgaattc aaaaattcct tttccgctag cttgtgcggg tgcaggagtt
    11281 gattctgtgg attctgcttt tggtgctgcg ctttcttctt cggcgtcgtc ttcgtgacct
    11341 tctacgccat caaatgttac tagtacttgt ccaactgtag caactgtacc ttctgcaact
    11401 ttgatttctt taatcgttcc tgaaactgga gaagtgattt cttccactga tttgtcgttt
    11461 tgtacttcaa atagggattc atcttcttca atcttatcgc ctggttgtac aaaccattta
    11521 acgatttcac cttcatggat accttcaccg atatccggta atttaaatga atatgccatt
    11581 ttattaagcc tcctgtaatt tctaaggttc agataaactg aaccttagta taaaaatatt
    11641 tctttcccct tctaaaactc cccataagtt ttaaaacggt cattataaat taaaatgcaa
    11701 taacttcttt tacacgttcg atgatatcgt tgtggttagg taaccaaact gtttctgctt
    11761 gagagaacgg gaatacgcta tctggagcag caacacgcat aactggagct tcaagagaaa
    11821 ggattgcatg gtcgttgatt tcagcaacga tattagctgc aatacctgct tgtttttgcg
    11881 cttcttgaac tacaactgcg cggtttgttt tcttaacgga agcaatgatt gtttccacat
    11941 caattgggct aattgtacgt aaatcgataa cttctacaga tacgccatct ttttcaagcg
    12001 cttctgctgc tttcattgat tcttgtacca ttgcaccgta agtgatgata gaaacatccg
    12061 taccttcacg acgaacagct gctttaccaa tttctactgt gtattcgcct tctggaactt
    12121 cttcacggaa agaacggtat aatttcatat gttctaagaa gataactgga tcgttatcac
    12181 gaatagctga gattaaaaga ccttttgcat catatggagt ggatggaatt accactttta
    12241 aaccaggtga ttgagccatt aatccttcta agttatccgc atgcatttct ggtgtatgaa
    12301 ctccaccacc aaaaggtgcg cgaattgtaa ttggagcagt acgagttccg cctgtacgat
    12361 aacgcatacg agccatttga ccagcaacgg aatccattac ttcaaatacg aaaccgaaga
    12421 attgaatttc tggaactgga cggaaacctt caagtgcaag accaatcgca agaccaccga
    12481 taccagattc tgctagagga gtatcgaata cacgatcttc gccaaatttt tcttgtaatc
    12541 cttctgttgc acggaatact ccgccgtttt taccaacgtc ttccccaaaa actaatacgt
    12601 tttcgtcttt ttcaagttct actgcaagcg catctgtaat cgcttgaatc attgtttttt
    12661 gcgccatgat tatttcgact ccttcgcttc atagattgcc agttgctctt tgataggagc
    12721 agttggtgtt tcgtacatat ttttaagaag atcagttaca gtttgttttg gtgtagcatc
    12781 tgcttcttta attgctactt tgatttcttc ttttgcttga tcgataacag cattttcttt
    12841 ttcttcgttc caaaggcctt taccttctaa gaaagtacgg aagcgaacga ttgggtcttt
    12901 aagttcccat tctccgtcaa gttcttttgt acggtaacga gttggatcat caccagaaag
    12961 tgtatgtgga ccataacggt aagtcattgt ttcgattaat gttgggcctt caccagcaac
    13021 tgcacgttca cgagcgaatt tagttacagc atatactgca agtggatcca ttccgtctac
    13081 ttgtacgcct gggattccgg ctgcaactgc tttttgagct aatgtttcag cagctgattg
    13141 tttttcacga ggtgtagaaa tcgcgaattt gttattttgt actacgaaga ttgctggagc
    13201 atggtaagca cctgcaaagt tcattccttc atagaagtca ccttgggaag aaccaccatc
    13261 acctgtataa gtgattacaa cagcatcttt tttacgtttt ttaagtccta gagcaacacc
    13321 ggcagcttgc acgatttgtg caccgatgat gatttgtggt gataatacat ttaaatcttc
    13381 agggaattgg ttacctacaa agtgtccacg agagaacaag aacgcttttg taagtggaag
    13441 tccgtgccag ataagttgtg gcacatcacg gtaacccgga agaatatagt catgtttttc
    13501 aagtgcgtag tggcttgcaa gttgggaagc ttcttgtcca gcagttggag cgtagaaacc
    13561 tagacgtcct tgacggttaa gtgagataga acgttggtca agtacacgag tccaaaccat
    13621 gcgagtcatt aattctacta actcgtcatc agttaaatcc ggcattaaat ctggattaac
    13681 gatttctcct ttttcattca aaatttgaac taattcaaat tgtttatgaa cagcctcaaa
    13741 ttgtttcttt acgtcgataa tagccttctt tgttttagaa gccatttcgt atccaccctt
    13801 tcgtcattca cattgtacag tttcaaattc ttcattagtt aggtatgcgt tttatgtaac
    13861 gctcgtccgg tcatttaccc atctaaatgg attcttttaa aactgccatc ctgattgtgt
    13921 attaattata atagcgtagt aaaaagaaaa gtcattctat agaaagaagc agattccgga
    13981 agcttttttc taaattccta ttaaccaatt acgtagcctc tccagttatt accacaaaat
    14041 cctcattgaa aacatgggtt ttaagagagt ttgtgaaaaa atattcattc tttcacaatg
    14101 tttcataaaa aatcaggaac tttcctttta gttaaaagtt atttctgttt tacttaaaaa
    14161 caagaatttt attaatacac taatcttctc tcttaattta cactaccaag attatgaagt
    14221 caataagtta atctctaatt gttttatcgc ttacaatggc attattactt aaatcattcg
    14281 ctttccactt ctgtattaaa aaaagatgaa acagataaaa actgttatat aatattgcaa
    14341 ctctcgcatt accacaccta tttcaagctt tcaaacagca aatatcgata gtttgtgaat
    14401 tcacaaacat ataatttttt tctttgttta gtttaaacga acattataaa aaaaataatt
    14461 gttattgttc gcttttaaaa ctttctcttt tttaacaaat atgcctttag acctattaaa
    14521 acactctttt tttcgagtct agtaatcttt cattcctttt ttttcgttct tttgttaaaa
    14581 taaagataag ttattaaaga acaggagaga atcaaatcat gcttacaatg gacgatattg
    14641 tacgagaagg tcatccagca cttagagaag ttgcgacaga agtgactttc ccgctttcag
    14701 atgaagaaaa aaaattagga cgcgagatgc tcgaattcct gattaacagt caagatgaag
    14761 agttagcaga aaaatatggg ttgcgtggtg gcgttggaat tgcagctcca caactcgctg
    14821 tgactaaacg tttcctagct attcatgtac atgatgaaaa agatcgtctt tatagttatg
    14881 tgctttataa tccaaaaatt cgtagccatt ctgttcagca agcttgtctt tctggtggtg
    14941 aaggttgtct ttctgttgac cgagaagttc cagggtatgt ggtccgaagt gaacgtgtaa
    15001 ccattgatgc ctttgacgaa aatggtacac cgcttaaatt acgtttcaaa ggttatccag
    15061 cgattgttat tcaacacgaa atcgatcatt tgaacggtat tatgttttat gatcatatta
    15121 ataaagaaaa tccatcatac ttgccaccag atgtggatgt gtttggttaa attgaataaa
    15181 tccccgcagg aattaagatc ctgcggggat ttttgacttt atgagtgacc accaactgtt
    15241 tctatttttg tatcaagctg tctgaattta cgttcatttg catcgcctga gaatagcact
    15301 aaatcaagtt cttcgtgaat aaaatgacca tctgaatcca ctaaattttt ttcaaataat
    15361 cgcgagtcaa ttttagcaaa gatagtatga tagtccatgt cagaaactgt ttgaatcacg
    15421 gtgcattcga gaacaatcgg acacacatct atgtaagcta ctcccccact atcacttttg
    15481 gttaattcta tttgatgaac ttttatttta tcgttacgct ttcctgacga gaatccccct
    15541 tgctcaatca atcctaactg ctccgtgttt ggaaaattta ctgcaaattt ttggccagca
    15601 tgcaagtgtt tgctggcatt actttctgct gacacgccta taacaatact atctcctaat
    15661 gtgtacgatg atgatcccgt tgacatttgc ggttctccaa cctcattcaa atacgttaat
    15721 acaaagactg gataagctgg ataaaatttt tctgtttcta tgcgctgttt caaagttagc
    15781 acctctagtt ttttctttca ttataaatga tgccatacta agatttcaag aataaattaa
    15841 aaccttacaa gtaagcgctt tatgtgtttt tctggtaaaa taagattgga aagaaggtgg
    15901 aaaattggaa cgttatgata gacagatgcg tgttaagaac atcggaaaag ttggtcaaaa
    15961 aaagttactc acgaaaacga ttttgattgt tggcgttggc gcgattggtt catatgccgc
    16021 agaaatttgt gcacgaatgg gctttggaaa gttaatttta attgatcgtg actatgtgga
    16081 gctaagtaac ttgcagcgcc aatcgctttt cacggaacaa gatgcattag acaaacaagc
    16141 aaaagcgtat gcggcatcca aagcgttaca attaattaat agcgatattg aaatcgaata
    16201 tatagttgat gatgcgaacg caacaagttt aacgccttat gccggagcaa ttgattacat
    16261 acttgattgt acagataatt ttatgacgcg cgacttttta aatcaatttt gtttcagcca
    16321 tcaaattcca tggattttca cctcgtgtgc tggaaattat gcgaatctca tgccaattat
    16381 tccacccgac tctgcttgtt tacactgttt acttggtgat attccccaaa ccaacgcagc
    16441 aagttgcgat attatcggtg tggatggtgc gctgattccg attgtcgcgg gcatgcaagt
    16501 ttctttactt acacaaatga taatcaatcc tgatttcaaa tcaaatacct actatcaact
    16561 agataattgg caattttctt tccggtctct tgaagtcaag aaacgccccg attgctctgg
    16621 ttgcgcaact ggaaaaatga tttcagaagt gcctttttcc gagcaaacag tcgctctttg
    16681 cggaagagat acagtacaat ttcgtctgcc aaataaaagc aattatcacg aaattaaaca
    16741 aatgctgacg gaacaaaaaa ttatttataa tgaaaatccc gctttactca gtttccaata
    16801 cgaaaaattt caatttgtta ttttcaaaaa tggacgcgtg ttacttcatg ggacagaaaa
    16861 tataacagaa gcgaaaaaaa catatca
//
LOCUS       DASEAA010000046        16830 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.046, whole genome shotgun sequence.
ACCESSION   DASEAA010000046 DASEAA010000000
VERSION     DASEAA010000046.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16830)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16830)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16830
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.046"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            84..461
                     /locus_tag="U0342_001277"
     CDS             84..461
                     /locus_tag="U0342_001277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464268.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2422627.1"
                     /translation="MKFDDSKPIYKQIVHYIHTEIVTGIYNAGDKLLSVRELATKLEV
                     NPTTIQRAYAELEETEIIYTVRGTGKYLTEDKRRIEQLENDIAKQLTENFISEMSKLG
                     INKEKIIAWVKKVEEVEVNVSGK"
     gene            445..1134
                     /locus_tag="U0342_001278"
     CDS             445..1134
                     /locus_tag="U0342_001278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2422628.1"
                     /translation="MLVGNNIAKSYPNKLVLQNVDFEAKPGDMIVLTGENGSGKTTLL
                     DMLASLKKPDSGTLELDNEVFTTNDIRQQIAYLNNELYAKKSTTIEDYMKQHGLLFEN
                     MELDKWDRLLAGWRINKRLKLGELSTGMLMKVKIGSVLARKAKLYLYDEPFASIDIMA
                     RSEVMKAIISETNPDAITIISSHHLEGTEKLYSKLWLIKDNTLKTIETETYREETGNA
                     LIDFYKEEMNK"
     gene            1131..1835
                     /locus_tag="U0342_001279"
     CDS             1131..1835
                     /locus_tag="U0342_001279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422629.1"
                     /translation="MTKMITFYLKQISPILLIGLAIILGLNFLGFTMNLLEGTDLLFR
                     AIRGTTVMSLILVLITTWKITKLDTSKENVTLASLSGFSETKKFFGKLFAAYLSAITV
                     ILLQSAFIWYYGFETGRMEAGDALSFVSGTLMMFLFIAMFVCYFVIPVGWLKDHVKAS
                     SLQKAAVILLLFAILIVNLLAEYYLHIYNGPGIISILPNGHFDISLLSIVWNVGLCSV
                     IAGSYIYMKSKKMDTI"
     gene            1850..3850
                     /locus_tag="U0342_001280"
     CDS             1850..3850
                     /locus_tag="U0342_001280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2422630.1"
                     /translation="MLEIKHLKKSYKLGKKNETPVLKDINVTIQDGEFAAIIGKSGSG
                     KSTLLNIISGLDTDYEGKVLYNGEDLQDIDLDAYHFNHIGFIFQSFHLVNHMSVIENV
                     KVPLYLNPELAESDRNARALDLLKQVGLEDFASKKPTQLSGGQKQRVAIARSLANNPD
                     MIIADEPTGALDSVTSDEIIKLLKDLAAKGTTVIVVTHDLNIADQTDAVLRLADGEVI
                     SFERKKEVVQKVTHKNEKKLRLNWWATAKISFKSFFNRKFRNLLVALGTSIGIIAILL
                     AFGLGNGVNQSLSKIFGTTFSPNQITTYYKEDGGSKSPEPTTPLTSSEIKKIKQLYED
                     ENITEIYERTTVQGIKFEYDGEYLKGISGEMQEANFKPSRYEDLTVKDEYLLSGKMVT
                     SDETGAVIPSSVARAILGKKDSDELTKSDGDKLIGKKITLVYAGRNSDTKNTVKTETI
                     ISGITNPSKEGFARGFDVSTKTMNDFIKTTGIEKPILSVDAFTKTTAEAEEIVEKYED
                     DKDWANYSITNANAFVDTFSQFTDIIVYLIAFIAGLSLAVAGVMIAIVLYIGVVERTR
                     EIGVFRAIGYRKRHIRGLFMMEASYIIILANVLSSLVAMKIAKIASPILETKIGFEDM
                     IHISFWNFLVTLAITITIGFIFSIYPSNKAAKLDAAEALRSE"
     gene            3879..4382
                     /locus_tag="U0342_001281"
     CDS             3879..4382
                     /locus_tag="U0342_001281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422631.1"
                     /translation="MKKPLKISLIVVGIAVVIFAGVMLSYRFIKSMDVTENAEINKSA
                     TGDHVLLATQGSKFKDSVMDQVKKDMEGKNVHVSIIDTTKLDKVKADDYDKVVLFTTV
                     QSDDIPENVTTFMNDNKDKSIHIAVTADSGRWDDKPKDIDAISEASKAENKQDFVDDL
                     TKAIVAE"
     gene            4525..4725
                     /locus_tag="U0342_001282"
                     /pseudo
     CDS             4525..4725
                     /locus_tag="U0342_001282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464278.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
     gene            4821..5657
                     /locus_tag="U0342_001283"
     CDS             4821..5657
                     /locus_tag="U0342_001283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464279.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2422632.1"
                     /translation="MSVLNIEGAKLSYQKVGQGPILIFIPGANGTGDIFLPLAEQLKT
                     SFSVVMVDRRGYGDSELTAAIPERASHAYDDYRVTRDAADIAALAKALSDEPVYILGS
                     SSGSIVAMHVLKNHPEVVKKIAFHEPPINTFLPDSEMWQEANEKIVQTALTKNMAEAM
                     QLFGETLHIAPIDAESMSKPAVTIDEVTKDSTTQQMKYWFTYEIRQYTSSNISLDDFK
                     PYVHQITLLNGTDSKGSFPQDVNAFIAKQLGLTIVDIPGGHLGYIQKPAGFAKVLLSI
                     WG"
     gene            5783..6463
                     /locus_tag="U0342_001284"
     CDS             5783..6463
                     /locus_tag="U0342_001284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464280.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2422633.1"
                     /translation="MNIRTELQNSQLCEGLTEAQLNELMNKITVKEKHYKNNEILFYT
                     DEVTKVYILVKGNAAIAKNTSSGKRILGKNVTEPGELAGEIYYFSHRNPFWDYVIVLE
                     PTTVLEISSIDQETLQTLDLALQNQLLVNLLKSVTRKFEYIGEKVRMVSEDSVRAKIS
                     NYLFGIQDDDGSIELTETREEIADYLDITRPSLSRELGRMQKENIIRIEGSSVIILDA
                     IIFDTFIE"
     gene            6544..7155
                     /locus_tag="U0342_001285"
     CDS             6544..7155
                     /locus_tag="U0342_001285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464281.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nuclear transport factor 2 family protein"
                     /protein_id="HEM2422634.1"
                     /translation="MLLTRNEPFTAEKIQAKTDILELVQFERFCRDNALWDEMETCFT
                     KDSNVKISWFQGTGHGFIEASKKMTNPAPHKIYNTQVWINNDRAVAIMQATIQTRTII
                     NGVEMELNSDAKLVTRVERIEGRWYINAFEGVYEKDSLMPIIPSKLADVPAELLANFR
                     KSYACLALSLTLNGYEIDNNLPGIDRPEQVAQFFKEADEWLLQ"
     gene            7270..8091
                     /locus_tag="U0342_001286"
     CDS             7270..8091
                     /locus_tag="U0342_001286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2422635.1"
                     /translation="MEKSKTVQILLVFSVVALILSMVGVVSIWYGQKNHQTNNAKTTA
                     KKETTVTKKQDTFKITALGDSLTYGVGDTEGGGYVRVVENFYKQKEKNVENVNLAISG
                     AKSDQLLKQLDQKEVQNQIKSADVILMTIGGNDLFRGGEALDDFKSNAIKQAEASYTN
                     NLKQIYQTIRKLNPSAPVFHIGLYNPFMSLKNASEMSAVANEWNMQSQNLSQNEKNII
                     YVPTFDLFQQNGDAYLATDKFHPNHAGYQFIGNRVTEVIQTGGGKDDDGASTSSN"
     gene            8063..8968
                     /locus_tag="U0342_001287"
     CDS             8063..8968
                     /locus_tag="U0342_001287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2422636.1"
                     /translation="MTELALQVTNLHKKIRKREIIKGISFEVMPGEVFGFLGPNGAGK
                     TTTIRMIVGLIKPTSGTILIGGKDIRKNFTEAMRGLGSIVENPEFYTFLTGQENLAYF
                     ARMDSSIKKERIQEVTELVGLEKRINDRVSTYSLGMRQRLGIAQALLSNPKLLILDEP
                     TNGLDPSGIHEMRDFIRALARNEGISVLVSSHLLSEIELLCDRVAIMTDGTIIKTDQV
                     SHLLSSRAQLRWLATPFEQAKAFLESVTEVEVDGEYLVTAVNEHSAEWNEQLVAKGIQ
                     VHEIDKKKPSLEDLFLELTGGHTID"
     gene            8961..9941
                     /locus_tag="U0342_001288"
     CDS             8961..9941
                     /locus_tag="U0342_001288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464284.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422637.1"
                     /translation="MINLVYNEQLKLWRKKRLIVILALVAIIVAIFTYAQFRQHQEDE
                     KQAGTSDWHVQTQQQIVDLENRLGTGRLPEEYQKYFKVLVGQLQYYLDNDINPNAPGA
                     PTFLKTFVENGISLLFPLFIMVIAADLISAETSAGTMKFLLTRPVKRWRILTSKYISM
                     LLSISAIMVLSAVIAYLISGIVFGYGGWDAPVLTGFGMKDGAVTTTDVYQLPVWQLLL
                     MEFGLAWFVSVVVGVLTMFVSVLVRSTAAVMGIMLASLITGTILTNLVSSWPSAKYLF
                     MVNLQLTNYLNGSSPPVEGMTLSFSMLVLTAWMLVAFILSYFIFTKRDVY"
     gene            10068..10958
                     /locus_tag="U0342_001289"
     CDS             10068..10958
                     /locus_tag="U0342_001289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2422638.1"
                     /translation="MIKGIHHVSALTKSFSENHHFYSDILGLRLVKNTVNQDNIHMRH
                     LFYGDYTGSPGTLLTFFEVPRIGSSYNERAFFGNITLGIPKGTSSYWKKRLNDFAISF
                     QKEGQTLTLQDPDTMGIILTEIPETISNPIIHTDIPSEKQIVRIIGADYHVPNPAATS
                     QFFTDLFGLESQNGVLVDKDKTSFAKLHATSSDKKSRTGRGTIDHIAYTVETKEAVDE
                     LHDIAVRNDLKIEEFVDREYFKSLYIREPGGLRIEFASAGPGFTIDEPLETMGDNLAL
                     PSFLEEKRTEIETYFGGDLS"
     gene            10955..11914
                     /locus_tag="U0342_001290"
     CDS             10955..11914
                     /locus_tag="U0342_001290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464286.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HEM2422639.1"
                     /translation="MIKDLKGIHHVTAMTSSAEKNYAFFTEVLGMRLVKKTVNQDDIH
                     TYHLFFADDKGSAGTDMTFFDFPNLPKGRHGTDSISRVAFRVPSDAALEYWLDRFEQL
                     EVPHSDIKTLFGKKYLTFQDFDDQQLQLISDENNEGVAAGTPWKNGPVPEKYAIYGLG
                     PVFLTVVSLKNMDAILQTIFGFRKVTEEDGLHLYEVGEGGNGAQVIVEERTDIPAAMQ
                     GYGGVHHVAFRVEDHEELQKWIDRMNTIEAPNSGYVNRFYFESLYVPVSERILFEFAT
                     DGPGFASDEPYETLGEKLALPPFLEPKRAEIEKMVRPINTKRS"
     gene            11921..12529
                     /locus_tag="U0342_001291"
     CDS             11921..12529
                     /locus_tag="U0342_001291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464287.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2422640.1"
                     /translation="MEHIYIPGKNKDLAPLLLLHGTGGDEKSLVEVAEFIAGDAAVLS
                     LRGDIKEGGANRFFKRFHDGSLDLEDLESKTAELITTTRELAEKYQLDFERMIAVGYS
                     NGANIAANALLQAEDSFHKAILFHAMPAGNKQPEFSISHRNVFLSAGLNDPLITAKAS
                     EELVEILEKRGAKVETVWTAAGHSLTMEELEEAKKWYQNNQK"
     gene            12539..13159
                     /locus_tag="U0342_001292"
     CDS             12539..13159
                     /locus_tag="U0342_001292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavin reductase family protein"
                     /protein_id="HEM2422641.1"
                     /translation="MTIFKSADLSQKENYKFLTGSIIPRPIAFVTTLAEDGETVNAAP
                     FSFFNVVSSDPAIVSIAVQRANGEQKDTARNAAFTKELNIHIVSESFVEEMNKTAARL
                     APDVSEIDTTSLHLEKVPGMKTPKISEANIVLTAKLEQIIPIKNDAGEVVSDLILARI
                     LTYDFADEVFDSEHHYILPEKLEPVARLAGNDYTKLGDIFRIERPI"
     gene            13487..14743
                     /gene="hflX"
                     /locus_tag="U0342_001293"
     CDS             13487..14743
                     /gene="hflX"
                     /locus_tag="U0342_001293"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464289.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase HflX"
                     /protein_id="HEM2422642.1"
                     /translation="MEKKVLIVGISQKQKDFDYSMEELANLAAANNMEVVGEIRQNID
                     RENRATYVGKGKVDEIKGLAEMQDARLIIFNDELSPSQIRNLEEALELDVMDRTGLIL
                     AIFANRAKTKEAQLQVQIAKLQYELPRIFGQGEDMDQQSGKGGLSNRGSGEKKIETDR
                     RTIKYQIRHLQKELDMLVDDREVRRRKRKKNEIPVVSLVGYTNAGKSTTMNGLVRAYS
                     ETAEKQVFEKDMLFATLETSVREIVLPDNKQFLLTDTVGFVSKLPHQLVKAFRSTLEE
                     ARDADLLIHVVDYSDPHYKTMMKTTEETLKAVGVEDVPVIYAYNKADLIEGEIYPKQT
                     ENTIVFSAREKESLEFLTEVIRKELFASYEKATFLIPFEAGNVVAYLNDHADVLATEY
                     LENGTQIVAEVSPADLQKLAEYQVAE"
     gene            14809..15681
                     /locus_tag="U0342_001294"
     CDS             14809..15681
                     /locus_tag="U0342_001294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464290.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM2422643.1"
                     /translation="MKKTGWGILGAVAAFTGYAYWSTKHLTVTDYEIVSDKIPAEWDG
                     ATFVQLSDLHSASFGLYNNPLLSIVNELAPDAVFLTGDMIDGDESPYVAMAVVRKLAK
                     EFPVFYVSGNHEGRSAFYEDFKADMEKHHVTVLENERYFLKKDGAAIMVAGVRDPRFV
                     RDDWAEKELPKEVWEEAALKEALDDATANLSPDYFTILLAHRPEFWPLYQAYPIDLVL
                     SGHAHGGQFRLPLTEGLFAPGQGLMPKWTAGIHRAGGKALIVSRGLGNVTKLPRLFND
                     PEIIRMTLRAKGDA"
     gene            15687..16676
                     /gene="lplA2"
                     /locus_tag="U0342_001295"
     CDS             15687..16676
                     /gene="lplA2"
                     /locus_tag="U0342_001295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464291.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate protein ligase LplA2"
                     /protein_id="HEM2422644.1"
                     /translation="MIYLDNEDVLDQAYNFAMEEYALRSLDENETYFMFYRMKPTIIV
                     GKNQNTLEEINHAFVKEHHIDVLRRLSGGGAVYNDEGNISFSMITKDDGNSFQNFAKF
                     TEPVIRALRKLGVNAELSGRNDIEVNGKKISGNAQFATKGRLYSHGTLLFDVDLSMLE
                     KALQVDPEKYLSKGVKSVRSRVTTIREHLAEDIDILTFKQILLESIFETKDIPRYTFT
                     EADKQGIEKLRTERYRNWDWTYGKSPKATIKRKKRFPAGTIEFQVSLEKGQVKEATIY
                     GDFFGTEDVAELAGKIIGCRFERKSIQNAWQEINAKDYFGGIEKEAILDMLFE"
BASE COUNT         5684 a         2886 c         3549 g         4711 t
ORIGIN      
        1 attttccttt gatatagtac attcatagcc agtgtgacct atgtggtacg gtgatacgga
       61 cagacaggcg aaaggaggaa attatgaagt ttgatgatag taaacccatt tataaacaaa
      121 tcgttcatta tattcataca gaaattgtta caggaattta caatgctggt gacaagctac
      181 tatctgtaag agagttggca acaaagttag aagtaaatcc gacaaccatc cagcgagctt
      241 atgcagaact ggaagaaacg gaaattattt acaccgttcg aggtactggt aaatatttga
      301 cagaagataa gaggagaatt gagcaattgg aaaatgacat cgcaaaacaa cttaccgaaa
      361 attttattag tgaaatgagt aaattaggaa ttaataaaga aaaaattatc gcttgggtga
      421 aaaaagtaga ggaggtagaa gtaaatgtta gtgggaaata atatcgctaa atcctatcca
      481 aataaattag tcttacaaaa tgtagacttc gaagcaaaac caggcgacat gatcgtgctc
      541 actggtgaaa atggtagcgg gaaaacgacc ttgctagata tgttagcaag cttgaagaaa
      601 ccggatagtg gcacattgga attagacaat gaagtattta ctactaatga tatccgccag
      661 caaatcgctt atttaaataa tgaactttac gctaaaaaaa gtactactat agaagattat
      721 atgaaacaac atggtttgct ttttgaaaat atggagttag ataagtggga ccgattactt
      781 gctggatggc gaattaacaa acgactaaaa cttggcgaac tatcaacagg tatgttaatg
      841 aaagtgaaaa ttggtagtgt gttagcaaga aaagccaaat tgtatcttta tgatgaacct
      901 tttgcgagta tcgatattat ggctcgttca gaagtaatga aagctattat tagcgaaaca
      961 aatccagatg ctatcacgat tatttcttcc caccatttag aaggaaccga aaaattatat
     1021 agcaaactgt ggttaattaa agataacacg ttaaaaacta ttgaaacaga aacttatcgc
     1081 gaggaaacag gcaacgcatt aatcgatttc tataaggagg aaatgaacaa atgacaaaaa
     1141 tgattacttt ttatttaaaa caaatcagtc ctattctttt gattggactt gcaattatct
     1201 tggggctgaa ctttctgggg ttcacgatga atctgctaga gggaacggat ttgcttttta
     1261 gagcaattcg aggaacgacg gtaatgagcc taattctagt gcttattacg acttggaaaa
     1321 tcacgaaact cgacacatcg aaagaaaatg taacacttgc ttctctttct ggattttcag
     1381 aaacaaagaa atttttcgga aaactatttg ctgcttattt atcagcaatt actgtaattt
     1441 tacttcaaag tgcctttatt tggtattacg gttttgagac aggacgaatg gaagcaggcg
     1501 atgcgttatc gtttgtttct ggaacgttga tgatgttttt atttatcgct atgtttgttt
     1561 gttactttgt tattccggta gggtggttaa aagatcatgt gaaggcgagt tctcttcaaa
     1621 aagcggcagt tattctactt ctctttgcta tcctaattgt caatttacta gctgaatact
     1681 acttgcatat ttataacggc cctggaatca tttccatttt acctaatgga cactttgata
     1741 tttcccttct atctattgtt tggaatgtag gcttatgttc agttattgca ggcagttaca
     1801 tctatatgaa atctaaaaaa atggatacta tttgaaagta ggagaataaa tgttagaaat
     1861 taaacacctt aaaaaatctt ataagttagg aaagaaaaac gaaacaccag ttttgaaaga
     1921 tattaatgtg accattcaag acggagaatt tgcagcaatt ataggaaaaa gtggtagtgg
     1981 gaagtctacg ttgctaaata ttattagtgg acttgacact gattatgaag ggaaagtttt
     2041 atacaatggg gaagatttac aggatattga tttagatgcc tatcatttta atcatatcgg
     2101 ctttattttt caaagctttc atctagtcaa tcatatgtct gttattgaaa atgtaaaagt
     2161 tccattatat ttgaatcctg aattagcaga aagcgatcga aatgcgagag cgcttgattt
     2221 gctgaaacaa gtggggctag aagactttgc tagcaaaaaa ccaacacaac tatctggtgg
     2281 acaaaagcaa agggtagcga ttgcaaggtc tctcgctaat aatccagata tgattatagc
     2341 cgatgaacca actggagcac tggatagtgt tacttcagat gaaattatta aactgcttaa
     2401 ggatttggcc gcaaaaggga caaccgtaat agttgtaacc catgatttaa acattgcaga
     2461 ccaaactgat gcggtattac gcctagcaga tggagaagta atttcatttg aaagaaaaaa
     2521 agaagttgtc caaaaagtta cccacaaaaa cgaaaaaaag ttaagactaa actggtgggc
     2581 tactgcaaaa atttctttta aaagtttttt caatagaaaa ttccgaaatt tgctcgtagc
     2641 acttggcacc tcgattggaa ttatcgctat tttattagca tttgggcttg gaaatggagt
     2701 aaatcaaagt ctttcaaaga tttttgggac aactttttca cccaatcaga ttacgactta
     2761 ttataaagaa gacggtggct cgaaatcacc tgaacctacc actccattaa cgagtagtga
     2821 gatcaagaaa attaagcaac tgtatgaaga tgaaaatatt acagagatat acgaacgcac
     2881 tactgtccaa ggaattaagt ttgaatacga tggcgaatat ttaaaaggta tttctggtga
     2941 aatgcaagaa gccaacttta agccatcacg ctatgaagat ttaaccgtca aagatgagta
     3001 tcttctaagc gggaaaatgg tgacaagtga tgaaaccgga gcagtcatcc cgtcaagtgt
     3061 agcaagagct attcttggaa aaaaggattc tgatgaatta acaaaaagtg atggtgataa
     3121 actcattggt aaaaaaataa ccttagttta tgccggaaga aacagtgaca caaaaaatac
     3181 ggttaaaaca gaaacaatta tatccggtat taccaaccca tctaaggaag gttttgctag
     3241 aggatttgat gtttccacaa aaacaatgaa cgactttatt aaaacaactg gtattgaaaa
     3301 accgatttta tctgtagatg cattcacaaa aacgacagca gaagcagaag aaatcgtgga
     3361 gaaatatgag gatgacaaag actgggcgaa ttattcgatt actaacgcga atgctttcgt
     3421 agatacattt agccagttta ccgatattat tgtgtacttg attgccttta ttgcaggtct
     3481 ttcgcttgca gttgctggcg tgatgattgc tatcgtgctt tatatcggtg tggtggaacg
     3541 aacaagagaa atcggtgtat tccgagcgat tggttatcgt aaacgccata ttcgcggact
     3601 tttcatgatg gaagcaagtt atattattat tttagctaat gtgctatcaa gtcttgtcgc
     3661 catgaaaatt gcaaaaatag ccagtcccat tttagaaacg aaaattggct ttgaagatat
     3721 gattcacatt tcgttctgga atttccttgt tacactcgca ataacaatta ctattggctt
     3781 tattttctcg atttatccaa gtaataaagc agcaaaatta gatgcagcag aagctttaag
     3841 atcagaatga cccaactaac agaaaagagg aatttaacat gaaaaaacca ctaaaaatca
     3901 gcttaatcgt cgtaggaatc gccgtagtca tatttgcagg agtgatgcta tcctaccgtt
     3961 ttattaaatc aatggacgtt acagaaaatg ccgaaataaa taaatcagct acaggagatc
     4021 atgtattact ggcaactcaa ggtagtaaat tcaaagacag tgtaatggac caagtgaaaa
     4081 aagacatgga aggcaaaaac gtacatgttt cgattatcga tacaacaaaa ttagacaaag
     4141 taaaagcaga tgattatgac aaagttgttc tattcaccac agtgcagtcc gatgatattc
     4201 cagaaaacgt aaccactttt atgaatgata ataaagataa aagtatccat attgccgtaa
     4261 cagcagattc tggccgctgg gatgataaac cgaaagatat tgatgcaatt tccgaagcat
     4321 cgaaagcaga aaataaacaa gatttcgtgg acgatttgac aaaagcaatt gtggcggaat
     4381 aagactaaca gaaacaccca tcctttggtg gtggctcata agaaagtata tgaacttatt
     4441 gatagtgaca gctaacaaac agataatgta aaaagcgtaa tatgatggaa ttagaattcc
     4501 tcgtattgcg cttttatttt ttgaattatt tttccttgtt ataattttgc cgcatctcgt
     4561 atggtttgcg agtttattga gaaaatacaa ttagttagtc aatacatttt tattattgtc
     4621 acttatagta atacggcgcc aatgtgcgcc tctaccgaac tatatgaaca tttccttatg
     4681 agcacctacc atttggtggg tgttttttgg aaaataaatc cataatagct ttctcctttc
     4741 gtaaccacgg ttacagacga aatcacaaaa gctatctata ctaaagttag attttagata
     4801 aattagagga gatggtcata atgagcgttt taaacattga aggagcaaaa ttatcgtatc
     4861 agaaagtcgg acaaggtcct attcttattt ttataccggg agcaaatgga actggagata
     4921 tctttttacc actggcagag caattgaaaa catctttttc tgttgtaatg gtagatcgtc
     4981 gtgggtatgg ggacagtgag ttaacagcag ctataccgga gcgcgctagt catgcatatg
     5041 atgattaccg agtgactaga gatgctgctg atattgctgc actcgcaaaa gcgttaagcg
     5101 acgagcctgt ttatatttta gggtcaagct ctggttcgat tgttgctatg catgtcttga
     5161 aaaatcaccc agaagttgtt aaaaaaatag cctttcatga gccaccaatc aatacattct
     5221 taccagattc ggagatgtgg caagaagcga atgaaaagat tgtacaaact gccctaacta
     5281 aaaatatggc tgaagcaatg caactttttg gcgaaacact tcatattgcc cccattgacg
     5341 cagaaagcat gtcgaaacca gccgtaacaa tagacgaagt gacaaaagat tcaaccacgc
     5401 aacaaatgaa atactggttc acttatgaaa tccgccaata tactagctct aatatatctt
     5461 tagacgattt caaaccatat gttcatcaga ttacgttact taatggtacc gattcaaaag
     5521 gctcattccc acaagatgtt aatgccttta tagccaaaca gctcggatta actatcgtgg
     5581 atattccagg cggtcattta ggttatattc aaaaaccagc cggatttgct aaagtacttt
     5641 tgtcaatctg gggataaaaa taaaaaattc tgctaaaggt taaatttagc agaatttttt
     5701 tgatgcagtc gtaattgcta tttaaaagaa agtggtctat gcttatcgtt aaaagtaact
     5761 ttcattttag aggagaagca aaatgaacat tcgaactgaa ttacaaaata gccaattatg
     5821 cgaaggatta acagaagctc aattaaacga actgatgaat aaaattacgg ttaaagaaaa
     5881 gcactataaa aataatgaga ttttatttta tacagacgaa gtaacgaaag tatatatttt
     5941 agttaaagga aatgcggcca ttgctaaaaa tacaagtagc ggtaagcgga ttctaggtaa
     6001 aaatgtcaca gaacctggag aactggctgg ggagatttat tatttctcgc atcgcaatcc
     6061 attttgggac tatgtaatcg tgcttgaacc gacaacagta ttagaaatta gcagcatcga
     6121 ccaagaaact cttcaaacct tagatttagc tttacaaaac caactattag tcaatttatt
     6181 aaaaagtgtt actagaaaat ttgaatatat aggtgaaaag gtacgaatgg tttcagaaga
     6241 ctctgttcgt gcaaaaataa gcaattattt atttggcatc caagacgatg atggcagtat
     6301 cgaattaaca gaaacaagag aagaaattgc cgactatctt gatattacaa gaccttcact
     6361 ttcgagagaa cttggcagaa tgcaaaaaga aaatattatt cgtatcgaag gaagtagcgt
     6421 tattatttta gatgcgatta tatttgatac ttttattgag taactagtaa ccagcgttac
     6481 atcttttcgt atgcggtaat ggtaagctat tcgtattaaa agaatgaata cggaggagat
     6541 tagatgttat taactagaaa cgaacctttt accgcagaaa aaatacaagc aaagacagac
     6601 atccttgagc tagttcaatt tgaacgattt tgtcgcgaca atgcactttg ggatgaaatg
     6661 gaaacttgct ttacaaaaga ttcaaacgta aaaatttcat ggtttcaagg gactggccat
     6721 ggctttattg aagcatcaaa gaaaatgacc aatcctgcgc cacataaaat atacaatacg
     6781 caagtttgga ttaataacga tcgagctgtg gcaattatgc aagccactat ccaaacacgc
     6841 accatcatta atggagtaga aatggaactc aattctgacg ccaaattagt cacacgagtt
     6901 gagcgaatcg aaggcagatg gtatattaat gcgtttgaag gagtttatga gaaagactcg
     6961 ttgatgccaa tcattcccag taaacttgca gatgttcctg ctgagttgtt agctaatttt
     7021 agaaaaagct atgcttgcct agcactttca ttaacattaa acggttatga gattgataat
     7081 aatcttcccg gcattgatcg cccggagcaa gtggctcaat ttttcaaaga agctgatgag
     7141 tggttgctcc aataatttaa aaaggatagc tagtttttac tagctatcct ttttaaatga
     7201 aggagtctca ttttaaaata tgctatactt agtgaaatat aaacctcatg aaacggtagg
     7261 tggttgtcag tggaaaagag taagacggtt caaattctat tagttttttc cgttgttgcg
     7321 ttaattttga gcatggttgg ggtggtatca atttggtatg ggcagaaaaa tcatcaaacg
     7381 aataatgcga aaaccaccgc caaaaaagag acgacagtaa cgaaaaaaca agataccttt
     7441 aaaataaccg cgctcggtga ttcgcttaca tatggcgttg gcgatacaga aggcggcggg
     7501 tatgtccgag tggtggagaa tttctacaaa caaaaagaga aaaatgtcga gaatgtcaat
     7561 cttgctatta gtggggcgaa atcagaccag cttctcaaac aattagatca aaaagaagtg
     7621 caaaaccaaa taaaatcagc cgatgttatt ttaatgacga ttggcggaaa tgatttgttt
     7681 cgtggcggag aagcactgga tgatttcaaa agcaatgcaa ttaaacaagc cgaagcaagc
     7741 tatacgaaca acctgaaaca aatttaccaa acgatacgaa aattaaatcc atccgcgccc
     7801 gtttttcata ttgggctgta taatccgttt atgtcattaa aaaatgcgag tgaaatgtcg
     7861 gcagttgcga atgagtggaa catgcaaagt caaaatctat cgcaaaacga gaaaaatatc
     7921 atttatgttc cgacttttga tttatttcag caaaatgggg atgcatattt agcgactgat
     7981 aaattccatc caaatcacgc cggatatcag tttatcggta atcgggtgac agaggttata
     8041 caaacaggag ggggaaaaga cgatgacgga gctagcactt caagtaacta atctgcataa
     8101 aaaaattcgc aaacgagaaa ttatcaaagg gatttctttt gaagtaatgc ccggagaagt
     8161 ttttggcttt cttggaccga atggagctgg caaaacaacg acgattcgaa tgattgtggg
     8221 gctaatcaaa ccaacatctg gaacgatttt aatcggtgga aaagatattc gcaaaaattt
     8281 tacagaagca atgcgaggtc ttggctcgat tgtggaaaac ccggaattct atacattttt
     8341 aacgggacaa gaaaatttag cgtattttgc ccgaatggat tcgtcgataa aaaaagaacg
     8401 tattcaagaa gtaaccgagc tagttgggct agaaaagcgg ataaatgacc gagtttctac
     8461 gtattcactt ggtatgcgcc agcgtttagg cattgctcaa gcgttacttt cgaatccgaa
     8521 attattaatt cttgatgaac caacaaacgg tttagatcca tctggaattc acgaaatgcg
     8581 cgactttatc cgtgctctgg ctagaaatga aggtattagt gtacttgttt cttcccattt
     8641 attaagtgaa attgaacttt tatgtgaccg agtggcgatt atgacagatg gaacgattat
     8701 taaaaccgat caagtttcac atcttcttag ttctcgtgca caattacgct ggctggcgac
     8761 tccttttgaa caagccaaag catttttgga aagtgtaact gaagtagaag tggacggcga
     8821 atatctcgtg accgcagtga atgaacatag cgccgaatgg aacgaacagt tggttgcaaa
     8881 aggcattcaa gtccatgaaa ttgataagaa aaaaccatct ctcgaagacc tatttcttga
     8941 gttaacagga ggtcatacga ttgattaatt tagtctataa tgaacaatta aaactttggc
     9001 gcaaaaagcg actcatcgtt attttggcgc tagtggcaat tatcgtagcg attttcacgt
     9061 atgcacagtt ccgacagcat caagaagatg aaaagcaagc tgggacaagc gattggcatg
     9121 tgcaaaccca acaacaaatt gttgaccttg aaaataggct cggaacaggg cgactgccag
     9181 aagaatatca aaaatatttt aaagtgcttg tcgggcaact acaatattat ttggataatg
     9241 acatcaaccc aaatgcacct ggagcaccaa ctttcctaaa aacgtttgtc gaaaatggta
     9301 ttagtttatt gtttccgctt tttatcatgg ttatagcggc cgacttaatt agtgctgaaa
     9361 caagtgcggg aacgatgaaa ttcctgctga caaggcctgt gaagcgatgg cggattttga
     9421 cgagtaaata tatttcaatg ttgctttcga tttccgcgat tatggtatta tccgctgtta
     9481 ttgcctatct gatttctgga attgtgtttg gttacggtgg ctgggatgcg ccagttctca
     9541 ccggatttgg catgaaagat ggtgctgtta caacaacaga cgtgtaccaa ctgccggttt
     9601 ggcaactact gctcatggag ttcggactcg cgtggtttgt cagtgtcgtg gtcggcgtgt
     9661 taacgatgtt tgtatcggtg ctcgtccgct ccacagctgc cgtaatggga attatgcttg
     9721 cttcactcat taccggaacc attttaacca acctcgtcag ctcttggccg agcgcgaaat
     9781 atttatttat ggttaattta caactaacga attacttaaa cggctcgagc ccacccgtcg
     9841 aaggcatgac attgagtttc tcgatgctcg ttctgaccgc gtggatgcta gtcgcgttta
     9901 tcttatccta ttttattttc accaaacgag atgtgtatta aagagcgctt aatggcgctc
     9961 ttttttgcgg tcattaaaag ttacttactt tttgtgagca taaaactttt ctttttaata
    10021 gtttagttat aaactatagt tagtaatcaa gaaggaggta caaacaaatg attaaaggca
    10081 ttcatcacgt atccgcgcta acgaaatcat ttagcgagaa ccatcatttt tattcagaca
    10141 tattagggct acggctcgta aaaaatacag taaatcaaga caatattcac atgcgtcacc
    10201 tattttacgg agactataca ggaagcccgg gtaccttgtt aacatttttc gaagtacctc
    10261 gtatcggctc aagctacaac gaacgcgcct ttttcggaaa catcaccctt ggaataccaa
    10321 aaggcacaag ctcttactgg aaaaaaaggc taaacgattt tgcgatatct ttccaaaaag
    10381 aaggccagac tttaacctta caagatcccg atacaatggg tatcatccta acggaaatac
    10441 cagaaaccat ttctaaccca atcatccaca ctgatatccc gtctgaaaag caaattgttc
    10501 ggattatcgg cgcagactat cacgtgccaa atccggccgc gaccagccag tttttcacgg
    10561 atttatttgg cttagaaagt cagaatgggg tattagtaga taaagacaag acgagttttg
    10621 cgaaacttca tgccacaagt tcagacaaaa aatcgcgaac aggacgcggg acaatcgatc
    10681 acattgctta taccgttgaa accaaagaag ccgttgatga acttcacgat atagctgttc
    10741 gaaacgattt gaaaatagaa gaatttgttg accgcgagta ttttaaaagt ctatatattc
    10801 gcgaaccagg tggcttaaga attgaatttg caagtgctgg ccccggtttt acaattgacg
    10861 aaccgcttga aacaatgggc gacaacttag ccttaccaag ctttttagaa gaaaaaagaa
    10921 cagaaattga aacttatttt ggaggagatt tatcatgatt aaagatttaa aaggaattca
    10981 ccacgtaaca gcaatgacaa gtagtgcgga gaaaaattat gcgtttttta cagaagtttt
    11041 aggaatgcgt ttagtgaaaa aaaccgtcaa ccaagacgat attcatacgt atcatttgtt
    11101 tttcgccgat gacaaaggtt cagcgggaac ggatatgaca ttttttgact ttccaaattt
    11161 accaaaagga cgtcacggca cagacagtat ttctcgcgta gctttccgag tacctagtga
    11221 tgcggcgctt gaatactggc ttgatcgttt tgaacaatta gaagttcctc atagtgatat
    11281 caaaactcta tttggcaaaa aatatctgac attccaagat tttgacgacc aacaattaca
    11341 actgatttca gatgaaaata acgaaggggt agcagctgga actccatgga aaaacggacc
    11401 agtcccagaa aaatatgcaa tttatggctt aggaccagtc tttttaacgg ttgtttcgct
    11461 caaaaatatg gatgcgattt tgcaaacgat ttttggcttt agaaaagtga cagaagaaga
    11521 cggacttcat ttatacgagg ttggcgaagg tggtaatggg gcgcaagtga ttgtcgaaga
    11581 acgtaccgat attccagctg caatgcaagg ctacggtggc gttcaccatg tggcttttcg
    11641 agtagaagac cacgaagaat tgcaaaaatg gattgaccgc atgaatacaa tcgaagcacc
    11701 caactctggc tatgtaaacc gcttctactt tgaatcattg tatgtacccg tttcagaacg
    11761 aattttgttt gaattcgcga cagatggtcc gggctttgca agtgatgaac catacgaaac
    11821 actcggtgaa aaattagcct tgcctccatt tttagaacca aaacgcgcag aaattgaaaa
    11881 aatggtacgt ccgattaata cgaaacggag ctgataaacg atggaacaca tttatattcc
    11941 agggaaaaat aaggatttag ccccactatt actacttcac gggacaggcg gcgatgaaaa
    12001 gtcgcttgtc gaagtggcgg aatttatcgc aggtgacgcg gctgttttat cgttgcgcgg
    12061 tgatattaaa gaaggcggag caaatcggtt tttcaaaaga tttcacgatg gcagcttaga
    12121 tttagaagac ttggaaagta aaaccgcaga attaatcact acaacacgcg aactggctga
    12181 aaaatatcaa ttggattttg aacgaatgat tgcagtaggg tattcaaatg gcgcaaacat
    12241 cgcagccaac gcgctactac aagcagaaga tagtttccat aaagcgattt tgtttcatgc
    12301 gatgccagct ggaaataaac aacccgaatt ttcgattagc caccgcaacg tatttctgtc
    12361 cgctggctta aatgatccac ttattaccgc aaaagcctcc gaagaattgg ttgaaatcct
    12421 cgaaaaacgg ggcgcgaaag tcgaaacagt ttggacagcg gctgggcatt ctcttactat
    12481 ggaagaactt gaagaagcga aaaaatggta tcaaaacaac cagaaatgag ggaagtagat
    12541 gactattttt aaaagtgctg atttatctca aaaagaaaac tacaaatttt taacaggaag
    12601 tattattcca cgaccaattg cttttgtaac gacgcttgct gaagacgggg agacggttaa
    12661 cgccgccccg ttcagttttt ttaatgttgt ttcaagcgat ccagcgatag tttcgatagc
    12721 tgttcaacgc gcgaatggcg agcaaaaaga tacagcgagg aatgcggctt ttacgaaaga
    12781 attaaatatt catattgtta gtgagtcttt tgtggaagaa atgaataaaa ccgccgctcg
    12841 actggcacca gatgtgagcg aaatcgatac aacaagcttg catttagaga aagttcctgg
    12901 aatgaaaaca ccgaagattt ccgaggccaa tatcgtgctt acagctaaac tagaacaaat
    12961 tattccgatt aaaaatgatg ctggtgaggt tgtttccgat ttaattctgg cacgtatttt
    13021 gacatatgat ttcgcagatg aagtgtttga ttctgagcat cactatattt tgccagaaaa
    13081 gcttgaacca gttgccagac tcgctggaaa tgactataca aaacttggcg atattttccg
    13141 gattgaaagg ccaatttaac gagaaatagt tgcgaaacaa aagcgaccat gttaaactag
    13201 gggcaactta aatgaacgga gggttgccca tcatgcgtta tattagacta cgtttcccaa
    13261 aaaatctatg caactaattt aatagtgcgg gaatatccat gcttatttag tatgggtaac
    13321 gggattggtc ttgcgtgcat gtatggcacc caaaataaat atgggtagaa tgaaggtgga
    13381 atgcgcttca tttgaaagca agctagtatc tttggatgct atttttgtgt tttcttctac
    13441 tcaaaaaccc tgaccgcgct gaatctattt caggaggtcc ttttttatgg agaaaaaagt
    13501 attaatcgtt ggtataagtc agaaacaaaa agattttgat tattcaatgg aagaattagc
    13561 caatttagcg gctgcaaata atatggaagt agtgggcgaa atacggcaaa atatcgaccg
    13621 tgaaaatcgc gctacttatg ttggaaaagg aaaagtggat gaaatcaaag ggctggcaga
    13681 aatgcaagat gctcgcttga ttatttttaa cgatgaactt tcaccgtcgc aaattagaaa
    13741 cctagaagaa gcgttggaac tggatgtaat ggacagaaca ggcttgattt tagctatttt
    13801 cgcgaaccga gcaaaaacaa aagaagctca actccaagtc caaatcgcca aattacaata
    13861 tgaacttccg cgaatttttg gacaaggcga agacatggac caacaaagcg gaaaaggcgg
    13921 acttagcaac cgtggttcgg gcgaaaagaa aattgaaacc gatcgccgta ccatcaaata
    13981 ccaaatccgc catttacaaa aagagttaga catgctcgtg gatgaccgtg aagtacgccg
    14041 tcgcaaacga aagaaaaatg aaattcctgt ggtgtcactt gttggttata ccaatgctgg
    14101 aaaatccaca acgatgaatg ggctagtacg tgcttatagt gaaactgctg aaaaacaagt
    14161 ttttgagaaa gacatgctct ttgctacgct tgaaacaagt gtacgcgaaa ttgttttgcc
    14221 agataacaag caatttttac tcacagatac agttggtttt gttagcaaac ttccccatca
    14281 attagtgaaa gcattccgct ccacactaga agaagcacgc gatgcagatt tactcattca
    14341 tgtggtagat tattcggatc cgcattataa aacaatgatg aagacgacgg aagaaacgtt
    14401 gaaagctgtt ggtgtggagg atgttccagt tatttatgca tacaacaaag cggatttaat
    14461 agaaggagaa atttatccta agcaaacgga aaatacaatt gtcttttccg cgcgtgaaaa
    14521 agaaagtttg gaatttctaa ccgaagtaat tcgtaaagaa ctttttgcta gctacgagaa
    14581 agcgactttt ttaattccgt ttgaggcggg gaatgttgtc gcttatttaa atgatcatgc
    14641 agatgtttta gctactgaat acttggagaa tggcacgcag attgtggctg aagttagtcc
    14701 ggccgattta cagaagctag cagaatacca agtagctgag taaagcgagt tccagctgaa
    14761 tttgctataa tgaaacatac agcaaattta gtgaggagat ttctaactat gaaaaaaact
    14821 ggatggggta tacttggggc agttgctgct ttcacaggat atgcatactg gtcaaccaaa
    14881 catttaactg taacagatta tgaaatagta tcagataaaa ttccagcaga atgggacggc
    14941 gcaacttttg ttcagttgtc tgatctgcat agtgcaagtt ttggtttata taataatcct
    15001 ttgcttagta tcgtgaatga actagcgccg gatgctgttt ttctaacagg agatatgatt
    15061 gatggagatg agtcgccata tgtagcgatg gcagttgtgc gcaaattggc taaagaattc
    15121 ccggtttttt atgtgagcgg aaatcatgag ggtcgaagcg cattttatga agattttaaa
    15181 gcagacatgg agaaacatca cgttactgtc cttgaaaatg aacgctattt tctaaaaaaa
    15241 gatggcgccg caatcatggt agcaggcgtc cgggatcctc gttttgtaag agatgactgg
    15301 gcagaaaaag aactaccaaa agaagtatgg gaagaagcgg cattaaaaga agctttagac
    15361 gatgcgacag ctaatttatc accggattac tttacgatat tactggcgca tcgtccggag
    15421 ttttggccac tataccaagc ctatccaatt gatttagtat tatctggaca tgcgcacggc
    15481 ggtcaattta gactaccttt aacagaaggc cttttcgcac cgggacaagg tctcatgccg
    15541 aaatggacag cagggattca ccgggctggc ggtaaagcgc ttattgtgag ccgcggctta
    15601 ggaaatgtca cgaaactacc gcgcttattt aatgacccag aaatcattcg aatgacactt
    15661 agagcaaaag gggatgctta ggaaaagtga tttatttaga taatgaagat gtactcgatc
    15721 aagcgtacaa ctttgcgatg gaagaatatg cgcttcgttc tttagatgaa aatgaaacgt
    15781 attttatgtt ttaccggatg aagccgacga ttattgttgg taaaaatcaa aacacgctgg
    15841 aagaaatcaa ccatgctttt gtcaaagaac atcatatcga cgttctccgc cgtttatctg
    15901 gtgggggagc tgtctataac gacgaaggca atattagctt tagcatgatc acaaaagatg
    15961 atgggaatag ttttcaaaat ttcgcgaagt tcacagaacc agttattcga gcgctccgca
    16021 agcttggtgt aaatgctgaa ctgagtggtc gaaatgatat tgaagtgaat ggcaaaaaga
    16081 taagtggcaa tgcgcaattt gcaacaaaag gtcgactata tagccatggg actttacttt
    16141 tcgatgtcga tttatccatg ctcgaaaaag cattacaagt ggatccagag aaatacttat
    16201 ccaagggtgt taaatctgtg cgcagtcgtg taacaacaat tcgcgaacat ttagcggaag
    16261 atatcgatat tctaaccttt aaacaaattc tactggaatc tatttttgaa acgaaagata
    16321 tcccacgtta tacttttacg gaagctgaca agcaaggaat cgaaaaatta cgcacagaac
    16381 gttaccggaa ttgggactgg acgtatggta aatcaccaaa agccactata aaacgcaaaa
    16441 aaagatttcc agctggaact attgaattcc aagtttcact agaaaaaggt caagtaaaag
    16501 aagcgaccat ttatggggac ttttttggta cagaggatgt ggctgaatta gctgggaaaa
    16561 taatcggctg ccgttttgaa cgtaaatcta ttcaaaatgc ttggcaagaa ataaatgcga
    16621 aagactattt tggtggaatt gaaaaagaag caattttaga tatgttattt gaataaagtt
    16681 taaaactctg agatatagat tctcagagtt tttttaatgc ctaaagaaag cgatttcaat
    16741 tttatgttga cagagattaa atatatatag tattatttaa atatgataaa tgataattaa
    16801 atataattaa ttaaaaagga gtgaaacatt
//
LOCUS       DASEAA010000047        16600 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.047, whole genome shotgun sequence.
ACCESSION   DASEAA010000047 DASEAA010000000
VERSION     DASEAA010000047.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16600)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16600)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16600
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.047"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..488
                     /locus_tag="U0342_001296"
     CDS             <1..488
                     /locus_tag="U0342_001296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF4115 domain-containing protein"
                     /protein_id="HEM2422645.1"
                     /translation="VKTDTNNPTVKVEDSTKSKDTSKDTEKKDTTTNKDKSTETKDKK
                     EDTTKEVEVTKGGTSGNATTYTVKNTDKMTLSLSATGDSWIGVSDANGSTIQNETLST
                     QNPSAEIDLGDNKTVSIVIGNSPVTTVKINGKQLELAPDLVKQVLTINLEASDTSSDA
                     E"
     gene            579..1157
                     /gene="pgsA"
                     /locus_tag="U0342_001297"
     CDS             579..1157
                     /gene="pgsA"
                     /locus_tag="U0342_001297"
                     /EC_number="2.7.8.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-diacylglycerol--glycerol-3-phosphate
                     3-phosphatidyltransferase"
                     /protein_id="HEM2422646.1"
                     /translation="MNLPNKLTVIRIFMIPIFVILCVVPFDWGSVTWLDSTIPVTSLV
                     ATIIFIVAALTDWFDGHLARKYNLITNFGKFADPMADKLLVAAAFIILVEMHIAPSWV
                     VILIISRELAVTGLRLLLVEGGEVLAAGQLGKIKTFTQMIAIPLMLLNNFPFAWTGIR
                     VDLVFLYVCAFFAVWSGIDYFYKNRGVFKGSM"
     gene            1225..2469
                     /locus_tag="U0342_001298"
     CDS             1225..2469
                     /locus_tag="U0342_001298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence/damage-inducible protein A"
                     /protein_id="HEM2422647.1"
                     /translation="MASAEIIAVGTELLLGQIVNSNAAFISQELAADGIYVYHHTVVG
                     DNPTRLKEVIEIAENRSDILIFTGGLGPTEDDITKQILAAHLQKQLVEDEYHMNKINE
                     YFTSRNRTMTENNKLQAVIIEDSIVLNNDFGFAAGMYLRENNHTYVLLPGPPSEMKPM
                     FTSYANPLLLSESGDQNILESKIMRFFGIGESQLAADLNDLIVTQVNPTIATYAGDNE
                     VVVRITATAKTKEEASRLVKETEEEILRREGTFLYGYGEVSLSELVTAMLLEKELTIS
                     AAESFTAGLFQAEIARFPGISKIFKGGMVTYSEETKQSILQVSPQVIKEKGVVSAECA
                     KEMAENVSRLCKTDIGISFTGVAGPDSLEGHPAGTIWIGLSVKGYETEAFQFVYGRDR
                     NHNRRRAVKQGFQLIKQFLDAN"
     gene            2742..3788
                     /gene="recA"
                     /locus_tag="U0342_001299"
     CDS             2742..3788
                     /gene="recA"
                     /locus_tag="U0342_001299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecA"
                     /protein_id="HEM2422648.1"
                     /translation="MNDRQAALDQALKQIEKQFGKGSIMKLGEHSDQNISTISSGSLA
                     LDIALGVGGYPRGRIIEVYGPESSGKTTVALHAIAEVQAQGGTAAFIDAEHALDPAYA
                     KNLGVNIDELLLSQPDTGEQALEIAEALVRSGAVDMLVIDSVAALVPRAEIEGEMGDA
                     HVGLQARLMSQALRKLSGVINKSKTIAIFINQIREKVGVMFGNPEITPGGRALKFYST
                     VRLEVRRAEQLKQGTDVMGNKTKIKVVKNKVAPPFRIAEVDIMYGEGISREGELVDMA
                     AEVDVINKSGSWYSYKEERIGQGRENAKQYLKEHTDIRDEISKRVREEYEIDGSNKEP
                     LDEGEETLSLLDDE"
     gene            4089..5651
                     /gene="rny"
                     /locus_tag="U0342_001300"
     CDS             4089..5651
                     /gene="rny"
                     /locus_tag="U0342_001300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease Y"
                     /protein_id="HEM2422649.1"
                     /translation="MTIAITIISSLLFLIVGLVVGSLIFKSSTEKKLAAARGTAELIV
                     EDAKKEAETTKKEALLEAKEENHRLRTEIENELRGRRTETQKAENRLLQREENLDRKD
                     TSLSKREATLERKEESISKRQQQIEEKESKLAEMIQAEQTELERISALSKEEAKSIIL
                     NQVEEELTHDTAIMVKESENRAKEESDKKAKNILSLAIQRCAADHVAETTVSVVTLPN
                     DEMKGRIIGREGRNIRTLETLTGIDLIIDDTPEAVILSGFDPIRREIARIALEKLVQD
                     GRIHPARIEEMVDKARKEVDEHIREVGEQATFEVGIHSIHPDLIKILGRLRYRTSYGQ
                     NVLNHSLEVSKLAGILAGELGEDVTLAKRAGLLHDIGKAIDHEIEGSHVEIGVELATK
                     YKENDVVINSIASHHGDTEATSVIAVLVAAADALSAARPGARSETLENYIRRLEKLEE
                     ISESYDGVEKSYAIQAGREVRIIVEPDTIDDLSSYRLARDIRKRIEEELDYPGHIKVT
                     VIRETRAVEYAK"
     gene            5766..6263
                     /locus_tag="U0342_001301"
     CDS             5766..6263
                     /locus_tag="U0342_001301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyltransferase"
                     /protein_id="HEM2422650.1"
                     /translation="MSEWEILPMIEEHYPGVAAVHQEGIETGNATFQEKTLSIEAFDE
                     KYLNTCRLVVLMNGKVIGWAALLPFSSMHAYRGVAELSIYIAKSARGKGIGKALMHEI
                     IQTSEQNGFWTLQSLIFPENKASIALHHTYGFQTLCVHEKLGEMNGVFRDVALLERRS
                     NRNGE"
     gene            6269..7072
                     /locus_tag="U0342_001302"
     CDS             6269..7072
                     /locus_tag="U0342_001302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR00282 family metallophosphoesterase"
                     /protein_id="HEM2422651.1"
                     /translation="MKILFIGDVVGSIGRDAITEYLPQLKKKYKPTITVINGENAASG
                     RGITEKIYKDFLELGANAVTLGNHTWDNRDIFEFIDDAKYLVRPANFPDDTTPGTGMV
                     FVKSNQHEIAVINMQGRTFLADLDDPFRKMDTLIEEAKKRTNIIFVDFHAETTSEKEA
                     MGWYLDGRVTAVVGTHTHVQTSDNRILPEGTAYLTDTGMTGPYDAILGMEKEAVIRRF
                     KTALPTRFEVPKTGRAVLSGCLITLDENTGKAQKIDRILINEDHPFSFD"
     gene            7089..7451
                     /locus_tag="U0342_001303"
     CDS             7089..7451
                     /locus_tag="U0342_001303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RicAFT regulatory complex protein RicA family
                     protein"
                     /protein_id="HEM2422652.1"
                     /translation="MTVSKDEIMKKATELRDALQQTEEVSFYRLAEERINANSKVAAK
                     VSKIKLLQKEAVNLEHYQKLEAMKQTENQIDNVRADIDSLPIVTEFRRAQEDANDLLQ
                     SITTEITTKVTTELEKEN"
     gene            7561..10143
                     /gene="mutS"
                     /locus_tag="U0342_001304"
     CDS             7561..10143
                     /gene="mutS"
                     /locus_tag="U0342_001304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair protein MutS"
                     /protein_id="HEM2422653.1"
                     /translation="MTEYTPMIKQYLEIKDKYQDAFLFFRLGDFYEMFFEDALNASQI
                     LEITLTGREGGTKEKIPMCGVPYHSASGYIDTLIEKGYKVAICEQVEDPKTTKGMVKR
                     EVVQLISPGTVMDERGLKAKENNYIASLYCYEGKEYGFAYSDLSTGELKSTVIEASED
                     RLINELTTLSTRELIVSSSEKEVLSDVMKEQLGLTFSVHEEDTIPVENEKLVTRHMSL
                     SEKRAIGKLLHYLKETQKRDLGHLQQAVHYETSNYMKMDYYSKRNLELAESIRGKGRQ
                     GTLLWLLDNTQTAMGGRMLKQWIDRPLIDRKKIIDRQNDVSELMAHFFERLELVENLK
                     NVYDLERLAGRVAYGNVNARDLIQLRNSLYQIPRIRATLLSMSSESLTELANQLDPCE
                     ELTEKLEEAIMDSAPISIREGGIIKDGYNSQLDTYRDASRNGKTWIAELERKERELTG
                     IKTMKVGFNRVFGYYIEVTRANTHLLPEGRYERKQTLTNAERYITPELKEKEKLILDA
                     EEKSMELEYQLFSEVREMVKDYIERLQKLAKSVSEIDCLQSFADISEKNHFIRPTLSE
                     DGSLHVKQGRHPVVEKVMGAQSYVANDCDLDENREILLITGPNMSGKSTYMRQVALTA
                     ICAQVGCFVPAEEAILPIFDQIFTRIGAADDLIAGQSTFMVEMLEARNAIVHATKDSL
                     ILFDEIGRGTATYDGMALAQAIIEYIHENVHAKTLFSTHYHELTDLEKELSGLQNIHV
                     SAVEENGKVVFLHKIKEGPADKSYGIHVAELAELPKSLIERASRILEQLENDDKKIII
                     ASVKQPEEVHEEVQLSMFPVEPEKKVSSKETKLLKEIASMNIMQMTPMDAMNKLYELQ
                     SKIH"
     gene            10163..11974
                     /gene="mutL"
                     /locus_tag="U0342_001305"
     CDS             10163..11974
                     /gene="mutL"
                     /locus_tag="U0342_001305"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA mismatch repair endonuclease MutL"
                     /protein_id="HEM2422654.1"
                     /translation="MAKHIVELTDALSNKIAAGEVVERPASVVKELVENAIDAGSTVI
                     DILVEEAGLNKITIIDNGSGIEEEDVATAFLRHATSKIKNEADLFRVHTLGFRGEALP
                     SIASVSHLEMETSTGEAKGTTISLEGGKIIEQKSGHARKGTQIEVSQLFFNTPARLKY
                     LKSLPTELGNITDILNRLALAHPDISFRFSHNGKPLLQTNGNGDLRQVIAAIYGVSIA
                     KKSVPVKAESLDFKISGYAVLPEVNRSNRNYISTIINGRFIKNFALVKAIQEGYHTLL
                     PIGRFPIIVLQIEMDPIIVDVNVHPAKLEVRLSKEKELGQLISQMIKETFHKLQLIPD
                     GEISKKQKEDQKSEQIQMSFEENKPVKETPTLFSKPTIPEYVPSDEDAPREDDFILET
                     MPSYEPESQAEQEEHTKERIPKMYPIGQMHATYIFAQNENGLYIIDQHAAQERIKYEF
                     YREKIGEVSRELQELLVPIVLEFPADEYVRLEEQKAKLEEVGVFLENFGQNSFIIRAH
                     PTWFPKDQEEEMLREIIDEALSAPSISIHKLREDTAIMMSCKKSIKANHYLTTQDMEA
                     LLDTLREASDPFTCPHGRPVIIQYSTYELEKMFKRVM"
     gene            11991..12539
                     /locus_tag="U0342_001306"
     CDS             11991..12539
                     /locus_tag="U0342_001306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate responsive antiterminator"
                     /protein_id="HEM2422655.1"
                     /translation="MELPFSNQSIIPAAHNQKDMEKILELDLTYMVMLETHVAQLKAL
                     VKYAQAGGKKVLLHADLVNGLKNDDYAIDFLCTEICPDGIISTRGNAIMKAKQHKMLA
                     IQRLFMIDSSAYNKGVALIQKVQPDCIELLPGIIPEQVQKMTQKLHIPVIAGGLIETS
                     EQVNQVIASGAIAVTTSNKHLW"
     gene            12965..15196
                     /gene="pflB"
                     /locus_tag="U0342_001307"
     CDS             12965..15196
                     /gene="pflB"
                     /locus_tag="U0342_001307"
                     /EC_number="2.3.1.54"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate C-acetyltransferase"
                     /protein_id="HEM2422656.1"
                     /translation="MTEQWYEFAGGNWQQEVDVRDFILKNYRLYDGDDTFLVGPTEAT
                     TKLWDQVMDLTKKERENGGVLDMDTKIVSTITSHDPGYLNKDLEKVVGVQTDVPFKRA
                     LQPFGGIRMAEVAAESYGFKVDEEISHIFSEYRKTHNQGVFDAYTAEMRAARKSGVIT
                     GLPDAYGRGRIIGDYRRVALYGVDFLIKQKKQDLNNTGLRTMSDDVIRQREELNEQIR
                     ALGELKVLGEKHGFDLGRPAKTAQEAFQWLYLGYLAAIKEQNGAAMSLGRTSTFLDIY
                     VERDLRNGLITEEEAQEIVDHFIMKLRLVKFARTPDYNELFSGDPTWVTESIGGITEE
                     GVPLVTKNSFRFLHTLDNLGPAPEPNLTVLWSTHLPSGFKKFCAKMSIKTSAIQYEND
                     DVMRPKWGDDYAIACCVSAMRVGKQMQFFGARANLAKTLLYAINGGIDEKSKAQVGPA
                     YRPVEGDVLDYKEVMEKYDAMMEWIAELYLNTLNVIHYMHDKYAYERIEMALHDTEVL
                     RTMATGIAGLSVAADSLSAIKYATVRPIRDEDGIVVDYEIEGDYPKYGNNDDRVDEIA
                     VELLKTFMTKVRKHKTYRDAVHTTSVLTITSNVVYGKKTGNTPDGRRAGEPFAPGANP
                     MHGRDTKGALASLSSVAKLPYEYGQDGISNTFSIVPKALGREDESQINNLVAMLDGYS
                     TKMGHHLNINVFNRDTLLDAMDHPEEYPQLTIRVSGYAVNFIKLTREQQLDVIHRTMH
                     ESM"
     gene            15273..16019
                     /gene="pflA"
                     /locus_tag="U0342_001308"
     CDS             15273..16019
                     /gene="pflA"
                     /locus_tag="U0342_001308"
                     /EC_number="1.97.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate formate lyase-activating protein"
                     /protein_id="HEM2422657.1"
                     /translation="MTEVLGRVHSVETMGTVDGPGIRFIVFMQGCLLRCQFCHNPDTW
                     KIGTGTERSAQDVFDEAIKYKEFWDASGGGVTVSGGEPLLQVDFLIEFFTLCKAAGVH
                     TTIDSCGGCFTRDPEFIEKLDRLMEVTDLILLDIKQINPEKHLKLTTKSNAPIIDFAH
                     YLRDKEQPIWIRHVLIPTKTDDPEDLTKLHEFIQTLPNVKQVDVLPYHTMGVYKWKEM
                     GIRYPLEGIEAPEEEVVALANKILETSSYK"
     gene            complement(16053..16583)
                     /locus_tag="U0342_001309"
     CDS             complement(16053..16583)
                     /locus_tag="U0342_001309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2422658.1"
                     /translation="MIPNVLEYTLLQMIAREASSGYELANRLRIMQNTHHSQIYPSLS
                     KLEKAGFLVVHKHSQDKKPDKKVYTITQTGLDSLLEWSETPLKIPVTRDEFTTKVQLD
                     WLNNARTKGLIQERESYLKEQLGLIEETLDHFAKLFDLKTKQDKLKNMSYQVYARRLD
                     LIQTELKWCEEMYKIL"
BASE COUNT         5719 a         2879 c         3420 g         4582 t
ORIGIN      
        1 aagtgaaaac agatacaaat aatcctacag taaaagtaga agattcgaca aaaagcaagg
       61 atacaagtaa agacactgag aaaaaagata cgacaacaaa caaagataaa tctacagaaa
      121 caaaggataa aaaagaagat acaaccaaag aagttgaagt gactaaagga gggacgtctg
      181 gtaatgccac tacgtacaca gtgaaaaata cggacaaaat gactctgtca cttagcgcca
      241 ctggtgattc ttggataggc gtttccgatg cgaatggtag tacaatccaa aacgaaacac
      301 tatcaaccca aaatccttct gcagaaattg atttaggtga taacaagacg gtttctatcg
      361 ttatcggaaa ttctcctgtt acaactgtaa aaatcaatgg taaacagcta gaacttgcac
      421 ctgatcttgt taaacaagta ttaacaatta atttagaagc aagtgatact agctcagatg
      481 ctgaataatt tgttttatat ggcgaaatct actcattaga tttcgccaac attttttata
      541 attacatact tttcaaatgt aaaaaaggag agaaaaagat gaatttacct aataaattga
      601 cggttatccg aatttttatg ataccaattt ttgtcattct ttgtgtagtg ccattcgact
      661 ggggaagcgt tacttggctt gattccacta ttccggtaac tagtttagta gcaactatta
      721 ttttcattgt agcggctctt acagactggt ttgatggaca tttagctcgc aagtataatt
      781 tgattactaa cttcggtaaa tttgctgatc cgatggctga taaactactt gtagcagctg
      841 catttattat tcttgtagaa atgcatatcg ctccatcttg ggtagttatt cttattatta
      901 gtcgtgaact agctgttact ggtcttcgct tacttttagt tgaaggcgga gaagtacttg
      961 cagctggtca acttggtaaa attaaaacat tcacacaaat gattgctatt ccgcttatgt
     1021 tattaaataa ttttccattt gcttggacag gtattcgtgt ggatttagtg ttcttgtatg
     1081 tatgtgcatt ctttgcagta tggtcaggta tcgattattt ctacaaaaat cgtggtgttt
     1141 tcaaagggtc tatgtaataa atgaaaaaag cataccattg tgtgcttttt tctatacaaa
     1201 aaatcgaatt ggagatgggg caagatggca agtgcagaaa tcattgcagt aggaacagaa
     1261 ctattactag ggcaaattgt taattctaat gctgcgttta tttcacaaga attagctgct
     1321 gacggaatat atgtatatca tcatacggta gttggagata acccaacacg tttaaaagaa
     1381 gtaatcgaaa tcgctgaaaa ccgaagtgac attttaatct ttaccggcgg acttggaccg
     1441 actgaggatg atattacaaa acaaatcttg gctgctcatc tacaaaagca attagtggaa
     1501 gatgaatacc atatgaataa aattaatgag tatttcactt ctaggaatag gactatgacc
     1561 gaaaataata aattacaagc ggttattatt gaagattcca tcgtattaaa taatgatttt
     1621 ggctttgcgg ctggaatgta cttaagagaa aacaatcata cttacgtttt gctaccaggt
     1681 ccaccatctg aaatgaaacc aatgtttaca agctatgcta acccattact tttaagcgaa
     1741 agtggcgatc aaaacatttt agaatccaaa attatgcgct tttttggaat tggagagtca
     1801 caattagctg ctgatttaaa tgatttgatt gtcacgcaag tcaacccgac gattgcgaca
     1861 tatgctggtg ataatgaagt tgtggtccgt atcacagcga cagctaaaac aaaagaagaa
     1921 gcaagcagac ttgtgaagga aaccgaggaa gaaatattgc gccgagaagg taccttttta
     1981 tatggatatg gagaggtgtc attgtctgaa ttagttacgg cgatgttact tgaaaaagaa
     2041 cttaccatct ctgccgcaga aagtttcact gctggtttgt tccaagcaga aattgcccgc
     2101 tttcctggca tttcgaaaat tttcaaaggt ggtatggtga catacagtga agaaacaaaa
     2161 caatctatat tacaagtatc tccccaagta ataaaagaaa aaggcgttgt tagtgcggaa
     2221 tgtgcgaagg aaatggctga aaatgtaagc cgcctttgta agacggatat tggaatcagt
     2281 tttacaggtg ttgcaggtcc agatagttta gaaggtcatc ctgctggcac tatttggatt
     2341 ggactaagcg ttaaaggtta tgaaacagag gcttttcagt ttgtctatgg aagagatcga
     2401 aaccataatc gccgccgtgc agtaaaacaa ggatttcagt taattaaaca atttttagac
     2461 gcaaattagt ctttttttct agaagaaaag gaaaaaaatc tgcagaaaaa acggaaatga
     2521 gcaataaaaa agtgttagac gaaagctgaa aatcccgtta taatgaggaa gaaagcaacc
     2581 ggtgcttaca caaaataaaa aatacgaata aatgttcgct ttttgcttgc ttctcgctct
     2641 aaaatgcgtt atagtaattt taggaaaaca ttctgactgt tttttgagag agaagaagta
     2701 gaaaaacagc tattaggata tttattgaag gaggcaacaa tgtgaatgat cgtcaagcgg
     2761 cattagacca agctttaaaa caaattgaaa aacaattcgg taaaggttcc attatgaaat
     2821 taggggaaca ttcagaccaa aatatatcta ctatttctag tggctcatta gcattagata
     2881 ttgctttagg agtcggcgga tatccacgtg gacgtattat tgaagtatac gggccagaga
     2941 gttccggtaa aacaactgtt gcacttcatg ctattgcgga agtacaagca caaggcggaa
     3001 cagctgcatt tatcgatgca gaacacgcac tagatccagc ttatgctaaa aacctaggtg
     3061 taaatattga tgaattatta ctatctcaac ctgatacagg agagcaagca ttagaaattg
     3121 cagaagcatt agttagaagt ggtgctgtag atatgctagt aattgactcc gttgcagcac
     3181 ttgtaccacg tgctgaaatc gaaggggaga tgggtgatgc acacgttggg ctacaagcac
     3241 gtttaatgtc ccaagcattg cgtaaacttt ccggtgttat taataaatca aaaaccattg
     3301 ctattttcat taaccaaatt cgtgaaaaag ttggtgttat gtttggtaac ccagagatta
     3361 cacctggtgg tcgtgcgctt aaattctatt cgactgtacg tttagaagta agacgtgcag
     3421 aacaacttaa gcaaggtaca gatgtaatgg gtaacaaaac aaaaattaaa gttgtaaaaa
     3481 acaaagtagc tcctccattc cgtattgctg aagtggatat catgtacggt gaaggtattt
     3541 cacgtgaagg cgagcttgtt gatatggccg ctgaagtgga tgtaatcaat aagagtggtt
     3601 catggtattc ttacaaagaa gaacgtatcg gccaaggtcg tgaaaacgca aaacaatatc
     3661 taaaagaaca tacagatatt cgtgatgaga tttcaaaacg tgttcgtgaa gagtacgaaa
     3721 tcgacggaag caataaagaa cctttagatg aaggcgaaga aacattaagt ttactagatg
     3781 atgaataaat aatactaaat acgtgatagg aatttacttc ctgtcacgta ttttttacta
     3841 tttaaaaaaa actaaggaaa ataaccgtac atttcattcc ttttcttgac attgtatgct
     3901 ttgacctata aaattaagtt gtatatttta tattgctggg agacaagggg gaagtttttt
     3961 cctttgaaaa tcggcttcaa ctgaatgggg agattagcac tcggttgttg atgaaaaata
     4021 cgcatgtgcc agaattctgg ccaccgacat aacaataacg aaaattgaat agcaaaggag
     4081 gtgtaaggat gacaatcgca atcacgatca tctccagttt gcttttctta atcgtcggtc
     4141 tagttgttgg ttctctaatt tttaaatcta gtacagagaa aaaactggct gctgcaaggg
     4201 ggactgcgga attaattgta gaggatgcga agaaagaagc agaaactaca aaaaaagaag
     4261 cattgcttga agcgaaggaa gagaatcata ggttacgtac tgaaatcgaa aatgaacttc
     4321 gtgggcgaag aacagagaca cagaaagcag aaaatcgctt attgcaaagg gaggaaaacc
     4381 tcgaccgtaa agatacttct ttaagtaaac gagaagctac acttgaaaga aaagaggaga
     4441 gtatcagtaa acgtcaacaa caaattgaag agaaagaaag caaactagct gagatgattc
     4501 aagcggagca gacagaactc gaaagaattt ctgcgctcag caaagaggaa gcgaaatcta
     4561 tcatccttaa ccaggtagaa gaggaattaa cacatgatac agcaatcatg gtcaaagaat
     4621 cagaaaaccg ggccaaggaa gagtcggata aaaaagcaaa gaatattctc tcactagcta
     4681 tccagcgttg tgcagctgat catgtggcag aaacaacggt atctgttgtt accttaccaa
     4741 atgatgagat gaaaggtcgg attatcggac gtgaaggccg taatatccgc acgcttgaga
     4801 cgttaacggg gattgatttg ataattgatg atacaccgga agcagtaatt ctttccggat
     4861 ttgatccaat tcgacgtgaa atcgctagaa tcgccttaga aaaacttgtt caagatggaa
     4921 gaatccatcc agctcgaatt gaagaaatgg tggacaaagc ccgtaaagag gtggacgaac
     4981 acattcgcga agtcggggaa caagcaacat ttgaagttgg aattcattcc atccatcctg
     5041 atttgataaa aattcttggc cgcttgcgtt accgtactag ttacggacaa aacgttctta
     5101 accactcact cgaagtttca aaacttgcag gaattcttgc aggagagctt ggcgaagacg
     5161 ttacgcttgc taaacgggcc ggactacttc atgacatcgg gaaagcaatt gaccatgaaa
     5221 ttgaaggcag tcatgttgaa atcggcgtgg aacttgctac caaatacaaa gaaaatgatg
     5281 tggtaatcaa tagtattgct tcccatcacg gagatacaga agctacttct gttatcgcag
     5341 tattggtcgc agcggcagat gcactttctg ctgcaagacc gggagctcgt agtgaaacgc
     5401 ttgaaaatta catccgtcgt ttagaaaaat tagaagaaat ttctgagtct tacgatggtg
     5461 tagaaaaatc ttatgctatc caagcaggac gtgaagtacg tatcatcgtt gaaccagata
     5521 caattgatga tctttcttct taccgccttg ctcgcgacat aagaaaacga attgaagagg
     5581 aattagatta tcctggtcac attaaagtga ctgtcattcg tgaaacaaga gcagttgaat
     5641 acgctaaata ataattaaaa gatacatcgc aaatttattt tgcggtgtat ctttttttaa
     5701 tcggttgcct aggtcgagta agaacggtat aattaatgga taaacgaaaa agggaggcgg
     5761 agtttttgag tgagtgggaa attttgccta tgatagaaga gcactatccg ggagtagctg
     5821 cagtccatca agagggcatt gaaacaggaa acgctacttt tcaagagaag acactatcta
     5881 tagaagcgtt tgatgaaaag tacttaaaca cttgtcgatt ggttgtcctt atgaacggca
     5941 aagtgattgg ctgggcagcg ctgttaccat tttctagcat gcatgcttat cgaggagtag
     6001 ctgaattaag tatttatata gcaaaaagtg cccgtggaaa aggcattgga aaagcactta
     6061 tgcatgaaat tatccagaca agcgagcaga atggtttttg gacattgcaa tctttgattt
     6121 ttccagaaaa taaagctagc attgcgcttc atcatacata tggattccaa actttatgcg
     6181 tccacgaaaa attaggcgaa atgaatggcg tttttcggga tgttgcacta ttagaacgta
     6241 gaagtaatag aaacggagaa taaacaaaat gaaaatacta tttatcggtg atgttgtcgg
     6301 ttctatcggc cgcgatgcca taacagaata tttaccacaa ttaaagaaaa aatataaacc
     6361 tactatcacg gtgattaacg gtgaaaatgc agcgagcggg cgtgggatta cagagaaaat
     6421 ttataaagat tttctggagc ttggtgctaa tgctgtaaca cttgggaacc atacatggga
     6481 taatcgtgat atttttgaat ttatcgatga cgctaagtat ttagtgcgcc cagcaaactt
     6541 tccagatgat actacacctg gtacgggaat ggtttttgtg aaaagcaatc agcatgaaat
     6601 tgccgttatc aacatgcaag gtcggacttt tctagcagat ttagacgatc cattccgcaa
     6661 aatggacact ttgatagaag aagcaaagaa acgcactaat attatttttg tggattttca
     6721 tgcagaaact actagtgaaa aagaagcaat gggttggtat ttagatggtc gtgttacggc
     6781 tgttgttggc acgcatactc atgtgcaaac ttcggataac cgcattcttc cagaaggaac
     6841 agcctatctg acggatactg gtatgactgg tccatatgat gctatcctcg gaatggaaaa
     6901 ggaagctgtt atccgtcgat ttaaaacagc tttaccaact aggttcgaag ttcctaaaac
     6961 tggtcgagca gtcttgtcgg gctgtttaat cacacttgac gaaaatactg gaaaagcaca
     7021 aaaaattgac cgaattctca tcaatgaaga ccacccattt tcctttgatt aagaatggag
     7081 atgaaattgt gacagtttca aaagacgaaa tcatgaaaaa agctaccgaa cttcgtgatg
     7141 cgcttcaaca aacggaagaa gtatcgtttt accgtcttgc cgaggaaaga atcaatgcga
     7201 actccaaagt agcagcgaag gtttctaaaa taaaattact tcaaaaagaa gcagtaaatt
     7261 tagagcatta tcaaaaactt gaagcgatga aacaaaccga aaaccaaatt gataacgttc
     7321 gcgcagatat tgattcgctt ccgattgtaa cagaattcag acgcgctcaa gaagacgcca
     7381 acgatctttt acaatcgatt acaacagaaa tcactacaaa agtaactaca gagcttgaaa
     7441 aagaaaatta accacttaaa actgccaaaa catcggcagt tttttccttt tgcggtcgca
     7501 gggaaatgaa actttatgct ataatgagag gatgaaaaag aagtaaggga tgatgagata
     7561 atgacagaat atacaccaat gattaagcag tacttggaaa tcaaagacaa atatcaagat
     7621 gctttcttat ttttccgttt aggagatttt tatgaaatgt tttttgagga tgcactgaac
     7681 gcttctcaaa ttttagaaat tacattaact ggtcgtgaag gtgggacaaa agagaaaatc
     7741 ccaatgtgcg gggttccata ccattcagcg agcggctata ttgatacatt aattgaaaaa
     7801 ggctataaag ttgcgatatg tgagcaagtc gaggatccta aaacaaccaa aggcatggta
     7861 aagcgagaag tagtgcagtt aatttcacca ggaaccgtta tggacgaacg cggcttaaaa
     7921 gcaaaagaaa ataactatat cgcctccctt tattgctatg aaggcaaaga gtacggcttt
     7981 gcttattctg atttatcaac aggtgaatta aaatcaaccg taattgaagc tagcgaagat
     8041 cgtttgatta atgaactaac gacactttca acaagagaat tgattgtttc ttcctcggaa
     8101 aaagaagtgc tttcagatgt catgaaggag caactaggtt taactttttc tgtacacgaa
     8161 gaagatacga ttcctgtcga aaacgagaaa ttagtaaccc gccacatgtc attatccgaa
     8221 aaacgtgcca ttggtaagtt actccattat ttaaaagaaa cgcaaaagcg ggatttaggg
     8281 catttacaac aagctgtcca ttacgaaacg agcaattata tgaagatgga ctactattcc
     8341 aaacgtaatt tagaattagc agagtcgatt cgtggtaaag gtcgtcaagg tacgttactt
     8401 tggcttctag ataataccca aactgctatg ggcggaagaa tgctcaaaca atggattgat
     8461 cgtccgttaa tagatcgaaa aaaaatcatt gatcgacaaa atgatgttag cgaattaatg
     8521 gcacactttt tcgaacgcct agagttagta gaaaacttga aaaacgtcta cgatttagaa
     8581 cgccttgctg gtcgagttgc atacggcaat gtgaatgcac gagacttaat tcaattgcgt
     8641 aattcgttat atcagatccc tcgtattcgc gcgacactgt tgtcaatgag tagcgagagt
     8701 ctcaccgaac ttgccaacca attagatcca tgtgaagaac taaccgaaaa attagaagaa
     8761 gcaatcatgg attctgcacc gatttccatt cgggaaggcg ggattattaa agatggttat
     8821 aatagccagt tagatacgta ccgcgatgca agccgcaatg gaaaaacgtg gattgcagaa
     8881 ttagaacgta aagaacgtga actaacgggt attaaaacga tgaaggtagg atttaatcga
     8941 gtattcggct attatattga agttacacgt gcaaacacgc atctgctccc agaaggccgc
     9001 tatgagcgca aacagacact aacaaatgcc gaacgttata tcacgcctga actaaaagaa
     9061 aaagaaaaac tcattttaga tgcagaagaa aaaagcatgg aattagagta ccaattattt
     9121 tctgaagtac gagaaatggt aaaagactac atagaacgtc tgcaaaaatt agccaaatct
     9181 gttagtgaaa tcgattgcct gcaaagtttt gcggatatta gcgagaaaaa ccatttcatt
     9241 cgtccgacat taagcgaaga cggttccctg cacgtaaaac aaggtcgtca tcccgttgta
     9301 gaaaaagtaa tgggtgccca gagctatgta gcaaatgact gtgatttaga tgaaaatcgg
     9361 gaaattttac ttataactgg tcctaatatg tcaggtaaaa gcacttatat gcgccaagta
     9421 gccttaacag caatctgcgc gcaagttggt tgttttgttc ctgcagaaga agcgatatta
     9481 ccaatttttg accaaatttt cacgagaatt ggcgcagcag atgatctaat tgccggtcaa
     9541 agtacattta tggtagaaat gttagaagct agaaatgcca ttgttcacgc aacgaaagat
     9601 agtttaattt tatttgatga aattggtcgt ggaacagcta cttacgacgg aatggcgctt
     9661 gctcaagcaa tcattgaata tatccatgaa aatgtccatg ctaaaacact tttctccacc
     9721 cattatcatg aattaactga tttggagaaa gaactgagtg ggttacaaaa tattcacgtt
     9781 agtgctgtag aagaaaatgg caaagtagtt ttccttcata aaattaaaga aggcccagca
     9841 gacaaaagtt atggtattca tgtcgctgag ctagcagaat taccaaaatc acttattgaa
     9901 cgagcgagcc gtattttaga acaactggaa aatgacgata agaaaatcat tatcgctagc
     9961 gtgaagcagc cagaagaagt tcacgaagaa gtgcaactgt cgatgttccc agtggagcca
    10021 gaaaagaaag tatcttctaa agaaacaaaa ctactaaaag aaattgcctc catgaacatt
    10081 atgcagatga caccaatgga cgcgatgaat aaattatacg aacttcaaag taaaatccat
    10141 taaaaagaaa ggcgggtttt aaatggctaa acatattgtc gaattaaccg atgctctatc
    10201 caataaaatt gctgccggag aagtagtaga acgccctgct tcagtcgtta aagaattagt
    10261 agaaaatgca attgatgcag ggagcaccgt catagatatt ttagtggaag aagcgggatt
    10321 aaataaaatt accattattg ataacggtag tggcattgaa gaagaagatg tcgcaacagc
    10381 ttttttacgt cacgccacaa gcaaaatcaa aaacgaagca gatttattcc gtgtgcatac
    10441 actaggattc cgcggtgagg cacttccaag tattgcctct gtgtcccatt tagagatgga
    10501 aacttccact ggcgaagcaa aaggaacgac catttcttta gaaggcggga aaataatcga
    10561 acaaaaaagc ggacatgcta gaaaaggaac acaaatcgaa gtatcccagt tgttctttaa
    10621 tacgccagca cgcctaaaat atttgaaaag tttaccaacc gagcttggta acataaccga
    10681 tattctaaat cgcttagctt tggcgcatcc agatatcagt ttccgctttt cacacaacgg
    10741 gaaaccttta ttacaaacca atgggaatgg ggatttacgc caagtaattg cagcaattta
    10801 cggtgtttca attgcgaaaa aatcagtacc agttaaagca gagtcacttg attttaaaat
    10861 ttctggatat gctgtattac cagaagtgaa tcgctctaac cgtaattata tttcgaccat
    10921 cattaacggt cgttttatta aaaatttcgc attagtaaaa gctattcaag aaggatatca
    10981 cacgctctta ccaattggac gtttcccgat tatcgttctc caaatcgaga tggacccaat
    11041 tattgtagat gtaaacgttc atcctgctaa attagaagtc cgcttaagta aagaaaaaga
    11101 attaggacaa ctaattagtc aaatgattaa agagactttc cacaaattgc aactaattcc
    11161 agatggagag atttctaaaa aacaaaaaga agaccaaaaa tcggaacaaa tccaaatgtc
    11221 ttttgaagaa aataaacccg taaaagaaac accaactctt ttttcaaaac caactatccc
    11281 ggaatatgtc ccttcagatg aggatgctcc acgagaagat gattttattt tggaaacaat
    11341 gccgtcctat gaaccagaat ctcaagcgga gcaagaagag catacgaaag aacgtattcc
    11401 taaaatgtat ccaattggtc aaatgcatgc aacttatatt tttgcgcaaa atgaaaatgg
    11461 cttatatatc attgatcaac atgcagcaca ggaacggatt aaatacgaat tttatcgtga
    11521 gaaaattgga gaagttagtc gcgagttgca agaattactt gttcctattg tgcttgaatt
    11581 tccagcggat gagtatgttc gtttagaaga acaaaaagct aaattagaag aggtcggcgt
    11641 tttcctagag aacttcgggc aaaatagttt tatcattcgt gcgcatccaa cttggttccc
    11701 gaaagaccaa gaagaggaga tgcttcggga aattattgat gaagcgttat ccgctccaag
    11761 cataagtatt cataaattaa gggaagacac agctattatg atgagttgta aaaaatcaat
    11821 taaagcaaat cactatttaa caacgcaaga catggaagca ttactcgata cactgagaga
    11881 agcaagcgat ccattcactt gtcctcatgg acgtccggtg attatccaat actcaacata
    11941 tgaactagaa aaaatgttta aacgtgtgat gtaaaagagg aggaaataat ttggagttac
    12001 cattttccaa tcaatcaatc atcccagctg cacataatca aaaagatatg gaaaaaattt
    12061 tagagcttga tttgacatat atggtgatgc tggaaacaca tgtggctcaa ttaaaagcat
    12121 tagtcaaata cgcacaagcc ggcgggaaaa aagttttatt acatgccgat ttagtcaatg
    12181 gactgaaaaa tgacgactac gcaatagact ttttatgtac agaaatttgt cctgatggta
    12241 ttatttcgac tagaggaaat gccattatga aagctaaaca gcacaaaatg ctagccatac
    12301 aacgtctttt catgattgat tcaagcgcct ataacaaagg tgtagcattg atacaaaaag
    12361 tccaacctga ttgtattgaa cttttaccag gtattattcc tgagcaagta caaaagatga
    12421 ctcaaaagct tcatatccct gtaattgcag gaggattaat tgaaactagt gaacaagtca
    12481 atcaagtaat agctagcggg gccatcgcag ttacaacatc caataaacat ttatggtaaa
    12541 taaacagcta agtcgtgtag caataacgac ttagctgttc ttatgaaaaa caatgaaaac
    12601 gctatattta cccgtggaac attgctagac aacgttttaa gcggtttcta actgttctat
    12661 ataaaatagc cacctttaaa ctgtaccata acaggtaagg ggagttggag tggtacagca
    12721 aaaattaata attaaaataa aaacaaaatt agaatcataa taaattaggg aaatggctat
    12781 ttaaaggtaa ttttaagctt tttaagttta aaagacacaa aaaagtcata aaaaagtttg
    12841 aaaaatattg cacaaaactg tagcattttc cagagaatat gttatgataa cagtgtagat
    12901 tatttataaa ttagtttgct caaaaaagca cgctcgagaa tgaacaataa atggaggtta
    12961 tatgatgact gaacaatggt atgaattcgc aggtggtaac tggcaacaag aagtagatgt
    13021 acgtgacttt atcttaaaaa actatcgctt atatgacggt gacgacacat tcttagttgg
    13081 cccaaccgaa gcaactacaa aactttggga tcaagtaatg gacttaacta aaaaagaacg
    13141 tgaaaacggt ggcgtactgg atatggatac caaaatcgtt tcaaccatca cttcacatga
    13201 cccaggttac ttaaataaag atttagaaaa agttgtcggt gttcaaactg acgtaccttt
    13261 caaacgcgct ttacaaccat tcggcggaat ccgtatggca gaagttgcag ctgaatctta
    13321 tggttttaaa gtagacgaag aaattagtca tattttttct gaataccgta aaacgcataa
    13381 ccaaggtgta tttgatgctt atactgctga aatgcgcgca gctcgtaaat caggcgtaat
    13441 tactggtctt ccagatgctt atggccgtgg ccgtattatc ggtgactacc gtcgtgtagc
    13501 actttacgga gtagacttct taattaaaca aaagaaacaa gatttaaaca atacaggttt
    13561 acgtacaatg agcgatgacg ttatccgtca acgtgaagaa cttaacgaac aaattcgtgc
    13621 tcttggcgaa ttaaaagtac taggcgaaaa acatggtttc gatcttggtc gcccagctaa
    13681 aactgcacaa gaagctttcc aatggttata ccttggttac ttagcagcaa ttaaagaaca
    13741 aaatggtgct gctatgagct taggacgtac atctacattc cttgatattt atgtagaacg
    13801 tgatcttcgt aacggcttaa ttactgaaga agaagcgcaa gaaatcgttg accacttcat
    13861 catgaaatta cgccttgtaa aatttgctcg tacaccagat tacaatgaat tattctctgg
    13921 agatccaaca tgggttactg aatccatcgg tggtattaca gaagaaggcg ttccacttgt
    13981 aacgaaaaac tcattccgtt tcttacacac tttagataac ttaggacctg ctccagaacc
    14041 aaacttaact gtactttggt ccactcattt accatcagga ttcaagaaat tctgtgctaa
    14101 aatgtctatc aaaacatctg ctattcaata cgaaaatgac gatgttatgc gccctaaatg
    14161 gggagatgac tatgcaatcg catgttgtgt atctgcaatg cgcgttggta aacaaatgca
    14221 attctttggt gctcgtgcca accttgctaa aacacttctt tacgcaatca atggtggtat
    14281 cgatgaaaaa tctaaagcac aagttggacc tgcttatcgt ccagttgaag gcgacgtatt
    14341 agactacaaa gaagtaatgg aaaaatatga tgcaatgatg gaatggattg cagaacttta
    14401 ccttaataca ttaaatgtta ttcactatat gcatgataaa tacgcttacg aacgtatcga
    14461 aatggcttta catgatacag aagtattacg tactatggca actggtatcg ctggactttc
    14521 tgttgcagct gactccttat ctgctattaa atatgctact gttcgtccaa ttcgtgacga
    14581 agatggcatc gtggttgatt atgaaatcga aggcgactat cctaaatacg gaaataatga
    14641 tgaccgtgta gacgaaattg ctgtagaact tctaaaaaca ttcatgacta aagttagaaa
    14701 acataaaact taccgtgatg cagttcacac aacttctgtt cttacaatca cttctaacgt
    14761 ggtttatggt aagaaaactg gtaacactcc agacggacgt cgtgcaggag aaccatttgc
    14821 accaggtgcg aacccaatgc atggccgtga tacaaaaggt gctttagctt ctctatcttc
    14881 tgttgctaaa cttccttacg aatatggtca agatggtatt tctaacacat tctctatcgt
    14941 accaaaagct ttaggtcgcg aagacgaatc tcaaatcaat aacttagttg caatgctaga
    15001 tggttattct acaaaaatgg gacatcactt aaacatcaac gtattcaatc gtgatacatt
    15061 acttgatgcg atggatcatc cagaagagta tccgcaatta actatccgtg tatctggata
    15121 tgcagttaac ttcatcaaat taacacgtga acaacaatta gatgttattc accgtacaat
    15181 gcacgaatcc atgtaataat taggcgagaa cgctttggca aggattgctc accgtagcaa
    15241 tccttgttat ttaggaaagg aagaggagaa ttatgacaga ggttttagga agagttcatt
    15301 cagtagaaac aatgggaaca gtagacggtc caggtatccg ctttattgtt tttatgcagg
    15361 ggtgtttact tcgttgccaa ttttgtcata atcccgatac ttggaaaatt ggtactggca
    15421 cagaacgttc tgcccaagat gtatttgacg aagcaattaa gtataaagag ttttgggatg
    15481 catcaggtgg cggcgtgaca gttagtggcg gtgaaccgtt gcttcaagta gatttcctaa
    15541 tcgagttttt cacgctatgt aaagcagcag gagtgcacac aactattgat tcttgtggtg
    15601 gttgtttcac acgtgatccg gagtttattg agaaattgga tcgtttgatg gaagtaacgg
    15661 atttaatttt actggatatt aagcaaatca acccagaaaa gcatttaaaa ctgacaacga
    15721 aatctaatgc accaataatc gattttgctc attatttacg tgacaaagag caaccaattt
    15781 ggattagaca tgtactaatt ccaaccaaga cagatgatcc agaagattta acaaagctcc
    15841 acgaattcat tcaaactctt ccaaacgtaa aacaagtgga tgtgcttcca taccatacaa
    15901 tgggtgttta caaatggaaa gaaatgggca ttcgttatcc gttagaagga atcgaggcgc
    15961 cagaagaaga agtggtagca cttgccaata aaatcttaga aactagtagt tataaatagt
    16021 aaaaaccggc gaacttagta ttcgccggtt ttttatagta ttttatacat ttcctcacac
    16081 cattttaatt cggtttgaat caaatctaat cgtcttgcat agacttgata agacatgttt
    16141 tttagcttgt cttgtttggt ttttaggtca aataatttag cgaaatgatc cagtgtttct
    16201 tcaattaaac ctaattgctc ttttaaatag ctttctcttt cttgaataag ccctttggtt
    16261 ctggcattgt ttagccagtc aagctgtact tttgttgtaa attcatctcg tgtgacaggg
    16321 attttaagtg gtgtttcaga ccattcaagc agggagtcta agccggtttg tgtgatagta
    16381 tagacttttt tatcaggctt tttatcttgg gaatgcttat ggacaactaa aaaacctgct
    16441 ttttctaact tagataaaga aggataaatt tggctatgat gtgtattttg cataattcga
    16501 agcctgtttg cgagttcata accactagat gcttcacgag caatcatttg taataacgta
    16561 tattctaaga catttggtat catacaatag cacctctaaa
//
LOCUS       DASEAA010000048        16293 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.048, whole genome shotgun sequence.
ACCESSION   DASEAA010000048 DASEAA010000000
VERSION     DASEAA010000048.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16293)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16293)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16293
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.048"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..645)
                     /locus_tag="U0342_001310"
     CDS             complement(<1..645)
                     /locus_tag="U0342_001310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM2422659.1"
                     /translation="MQVQKCRFFVLLLPALYLLYGISLALQFGNNADLINTIANSCLL
                     FLATIILTNMARLKNWIDFIWFCVFILYIIILLHLVAYIAVGDFVNSTYTGNFHIQKE
                     MINLIPFTTIENTFQQTLPTMPTIIQILGNVLLLCPLSFFMLYFKITSTAGKTLLVIF
                     LTSCGIELLQFAQTTMITGFESISLPPKRSTDIDDIILNTLSGLIGILLAYAVPS"
     gene            853..1818
                     /locus_tag="U0342_001311"
     CDS             853..1818
                     /locus_tag="U0342_001311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2422660.1"
                     /translation="MKELLGLLKEGNKSALTAALVNTVVSIIKGITYFFTGNIAMFAE
                     TLHSLGDAANQFFVFIGSALSKKRPTKRFPHGFGRMVNLVLLGAVIVVGIMAFETIRE
                     GFAHIIHPTSSTGFLINLTVLLLCTVLEFSVLVKAMHEIAHDVGLESKGLRLFKDSIL
                     NLGKAKAATKLVFLEDSVATGGGLLAMIAVIISHFTPFHQAEGIASMLIGVMMFIVVG
                     KVFLDNAAGVIGESDQSMHLTVGQLVMSDPDVRDIQVLTVLKEGDVFHVDVEVELDPM
                     LTLAEVDDIKDRLEESIGKLRGVADVLISFDEDDAIRNWEYGDGR"
     gene            complement(1863..2405)
                     /locus_tag="U0342_001312"
     CDS             complement(1863..2405)
                     /locus_tag="U0342_001312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422661.1"
                     /translation="MRITGERIYLRPFQITDANQKLAFHLANKAFFEGYSMERDDRFY
                     TIKEQQSLISRLEDFAASDVEYYYGIFLHDTDELIGTINLFSILRESLQSAFIGYFLD
                     KEHNGNGYATEAVELIVDFGFDILGLHRIEAGVMPKNERSKQVLLKAGFHLEGLAVQN
                     VRINGNWEDHQVLAIINPGD"
     gene            2595..3497
                     /locus_tag="U0342_001313"
     CDS             2595..3497
                     /locus_tag="U0342_001313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PAS domain S-box protein"
                     /protein_id="HEM2422662.1"
                     /translation="MNVNAETEDATLLLDGLLQNVAIIRFDTNKKVTYANALFAEAMG
                     YSEEEMLTLSHPDLCFPDFVQSASYKAMWTNLLAGQKFQNKIERKNARGERVWFEATY
                     IPIIREDTVVGVAKIATDITRREETVHDFASGLKSMATNLKEHSSVGKTRSEALLELV
                     KSITKESNENTDTLHDLQTEAQNIHGIINTINGIASQTNLLALNAAIEAARAGDAGRG
                     FSVVAEEVRKLSSRVEEAIKEVEKSVNGITQEINTISSGTERVEAKVEESQEVLILSL
                     EDFSQIESASTALDQNAGAFTKMI"
     gene            3525..3731
                     /locus_tag="U0342_001314"
     CDS             3525..3731
                     /locus_tag="U0342_001314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422663.1"
                     /translation="MKLIGKHPSGRAIIIRLNNQEYHYETANSFGSATSLTRAKTEAR
                     ADSFTSSEMNQGLHIGNWHWKELG"
     gene            complement(3771..4124)
                     /locus_tag="U0342_001315"
     CDS             complement(3771..4124)
                     /locus_tag="U0342_001315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422664.1"
                     /translation="MKKLFDETNEFEAKYYRTIWYGYIDNEFAPELSDEIKQLIQSDL
                     TEKTANPIEATHWVFYSETQAGDAIGDKVRSSIMVRHRDNKFVVHYNVSDFQFVTVFD
                     VATAFKDQLEQALNA"
     gene            complement(4153..4554)
                     /locus_tag="U0342_001316"
     CDS             complement(4153..4554)
                     /locus_tag="U0342_001316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosfomycin resistance thiol transferase FosX"
                     /protein_id="HEM2422665.1"
                     /translation="MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKE
                     KFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQG
                     EGRSIYFYDFDNHLFELHAGTLEERLKRYHE"
     gene            complement(4569..5948)
                     /gene="rlmD"
                     /locus_tag="U0342_001317"
     CDS             complement(4569..5948)
                     /gene="rlmD"
                     /locus_tag="U0342_001317"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM2422666.1"
                     /translation="MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEE
                     VVVEAVKVRDRFTEAKLNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDI
                     VIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGSGQVETGLFGANSHQL
                     VPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLV
                     FITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKL
                     MELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVK
                     EVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRS
                     GCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYRIRYMQPVDMFPQTAHVET
                     VVLLQLKDK"
     gene            complement(6013..6393)
                     /locus_tag="U0342_001318"
     CDS             complement(6013..6393)
                     /locus_tag="U0342_001318"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM2422667.1"
                     /translation="MTKPLKLVYTENGFDTGSFLIDDKLTEYSPADLMLMSIASCSAI
                     VFRNILKKKRVNFTDLWVDATMERIPEEENRISAIHLHFKITGAALDPKALEKALKLT
                     PKYCSMVRSVEKSILVDESLEIMP"
     gene            6500..7144
                     /locus_tag="U0342_001319"
     CDS             6500..7144
                     /locus_tag="U0342_001319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HEM2422668.1"
                     /translation="MEGVGNKVIVLAGMIGAGKSSYTELIANELGTKAFYESIKDNRI
                     LEMFYEDPKRWAFALQIYFLNTRFRSIKAALTDQNNVLDRSIYEDALFTQINFEEGNI
                     SEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQTFDNP
                     GLLDYYKHLHSRYDSWFESYDKSETLVINIDEIDINQPNDADYVMQLIHEKLKR"
     gene            complement(7174..8043)
                     /locus_tag="U0342_001320"
     CDS             complement(7174..8043)
                     /locus_tag="U0342_001320"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY/virulence factor BrkB family protein"
                     /protein_id="HEM2422669.1"
                     /translation="MWKKVVKYTKKNGIVQIGQTVSARVGRNDVSGNAAQLAYYMLFS
                     IFPMLLIAATLLAYLHIDKDSVFNMIKEFAPDQIMDFLEENLNNLLTQKNGGLLSIGI
                     IATLWSASNGMNAVMKSLNKAYGVTNKRNYVVQRLLSMFFTLAMLATVGATLLLLVFG
                     QQIGMFLINHLNFSEDFLSFWNNLRWTVTLIVIFVVFTFLYWVAPNRRSTLISVLPGA
                     LFSTIGWTVASLGFAYYVNNFGNYSATYGSIGVIIILMLWFYLTGIILMIGGELNATL
                     AIRKKKKELGEIN"
     gene            8133..8354
                     /locus_tag="U0342_001321"
     CDS             8133..8354
                     /locus_tag="U0342_001321"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1128 domain-containing protein"
                     /protein_id="HEM2422670.1"
                     /translation="MNLETPSQENLNFMLTEITTKLKMVNVGVFENLELDSVDYNALI
                     DIYQLIKRKSNFSPREMQLFAEELRRIRK"
     gene            complement(8374..9180)
                     /locus_tag="U0342_001322"
     CDS             complement(8374..9180)
                     /locus_tag="U0342_001322"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465233.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAC(3) family N-acetyltransferase"
                     /protein_id="HEM2422671.1"
                     /translation="MGEKMAIWRTKKPATKQKIVSDLQESGIKKGDTIIFHASMSKAH
                     WICGGPVTVILALQELVGESGNIVMPAQTGQLSDPAKWENPPVPESWWKIIRRETPPF
                     DPLVTPTRGMGVIAETFRTMPDVERSFHPYHSFCAWGKDKKQILANQPLAKSMGDESP
                     LGKMYQLDAKIILFGVDNNNNTSLHLAEERSNVFPLIENQAAFLKNGEIIWEKYQEID
                     YNSEVFIALGRAYEKERDFHPTTIIGAPTKIYDMRDLVDFGTDYFQTKNH"
     gene            complement(9306..10064)
                     /gene="map"
                     /locus_tag="U0342_001323"
     CDS             complement(9306..10064)
                     /gene="map"
                     /locus_tag="U0342_001323"
                     /EC_number="3.4.11.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I methionyl aminopeptidase"
                     /protein_id="HEM2422672.1"
                     /translation="MITLKSRREIDEMKAAGKILADTHKELKKIIKPGITSWDLEVFT
                     EEFLRKNGATPEQKGFEGYEYAICASINDEICHGFPRKQKLNQGDIITVDMVVNYRGA
                     LADSAWTYAVGEVPDDVKHLMDVTHKALYLGIEQAQVGARVGDIGHAIQTYVESENLA
                     VVREFIGHGVGPTLHEKPDIPHYGTAGKGPRLKEGMVITVEPMVNMGAWKAKMDDNGW
                     TARTVDGSLSAQYEHTFAITKDGPEILTYQGEND"
     gene            10252..10698
                     /locus_tag="U0342_001324"
     CDS             10252..10698
                     /locus_tag="U0342_001324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465235.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM2422673.1"
                     /translation="MTKVMIVYASMTGNTQEIADILGEELEKYDIEVEIEECISVDPE
                     DLLEYDGALIGGYTYDDGQLPDEFVDFYEDMADVDFSGKVCASFGSGDTFYDEYCLTV
                     DLIETRLKEQGATVPVAGLKVDLDPDEEDVVRAESYAKTFVDVLKG"
     gene            10836..12068
                     /locus_tag="U0342_001325"
     CDS             10836..12068
                     /locus_tag="U0342_001325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465236.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase"
                     /protein_id="HEM2422674.1"
                     /translation="MTVFSEKLEKYAELIVKVGVNVQPEQKVVIMAPVDAAPLVRLIS
                     KYAFEVGAEDVIMDWRDEELGALRYKNAPLRVFESAPVHRVAEKTELAKEGACFISIT
                     SEDPDLLNGVDSNKIATFQKTMGGAMSEFRELMQANVVSWTVVAAASQGWAAKVFPDL
                     TPAEQMETLWEAIFETTRINTENPVETWKNHDQTLAAKAESLNEKQFTSLHYTAPGTD
                     LTIGLPKNHLWVGAGSKNKKGHEFMANMPTEEVFCCADKLKVEGYVSSTKPLSYAGNI
                     IDDFKITFEKGRIVGVEAASGEEILKDLIATDEGSHYLGEVALVPDPSPISQSGILFY
                     NTLFDENASNHLAIGSAYAFNVKGGEEMSREELEAAGVNNSLTHVDFMIGSSEMDIDG
                     VTESGEVVPVFRKGDWAF"
     gene            12172..13431
                     /locus_tag="U0342_001326"
     CDS             12172..13431
                     /locus_tag="U0342_001326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2422675.1"
                     /translation="MKFSTWDINLKVRLFGEALLDISFWMVFPFLTIYFSESIGRELT
                     SLLLIISQVLAVFTALLGGYFADNFGRKRMMSISVIGEGFGFLVFAIGALHVVDSPYL
                     SFAGFAIASVFMAFYQPASQAMIADVVPPEHRTHIYSVFYMMINIAVVIGPILGSVLF
                     YNFTTETLLAIVCADLLLLFLLQKFGHETAPLLVNPDLQKEAVRKSIGAVLMEQLKNY
                     KIIFKDKIFFLYIVAGIIVSQSFMQLDLLFPLYIKEVIGASNLFVFHFTGEQLFGVIV
                     SINGFFVAALTVVVTRWMSHFREKFVFMNSSFLYAIAIFLFGISTGPWGAICAIILFS
                     FAELMTVGLQQTFVSQLAPEDKRAMYFSAAGLRYTLGKVIAPLAITLSTLIGYTGTFT
                     IIGILALISGLIYYYMYSEFEKQRQVS"
     gene            13649..14641
                     /locus_tag="U0342_001327"
     CDS             13649..14641
                     /locus_tag="U0342_001327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465238.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein"
                     /protein_id="HEM2422676.1"
                     /translation="MFGTTTIGIDLGTANILVYSKEKGIILNEPSVVALNTNDGTVLA
                     IGQEAKEMIGKTPTSISAVRPMKDGVIADFDLTSGLLREIMRRISVSGVRKPNVVVCT
                     PTGATSVERRAISDAVRSTGARSVVLIEEPVAAAIGADLPVAEPVANVIVDIGGGTSE
                     IAIISYGGVVSSTSIRTGGDHMDEEIIQYIRKNYNLLIGQTTAERIKMELGYAPIEHV
                     TQTADIRGRDLLTGLPKTIQVSSTEIQSALAETLQRILEAIRNTLELCPPELSGDIVD
                     RGIILSGGGSLLQGFRDWLVQEIDVPVHMAPSPLESVAIGTGRSLVFADKLAKN"
     gene            14770..14841
                     /locus_tag="U0342_001328"
     tRNA            14770..14841
                     /locus_tag="U0342_001328"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:14803..14805,aa:Arg,seq:cct)
     gene            complement(14915..15487)
                     /locus_tag="U0342_001329"
     CDS             complement(14915..15487)
                     /locus_tag="U0342_001329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422677.1"
                     /translation="MLKLYKKEQNQILYAKYWINNDKAIVHFGKIGKVGQKEETSNYL
                     EKYKSKAAFHEAFINRFVPQSYSENPPNENFWILIQYPLKSLTRTKRDIWLKDRVTDV
                     LNDDLGWKGLGIVDGFDIGQTANPNKQFALNIFCVVVDEEIGIKVIKSALRNNNCDYT
                     RVKIASRPFSDDAEYALNFSAKKKDVTFYV"
     gene            complement(15578..16246)
                     /locus_tag="U0342_001330"
     CDS             complement(15578..16246)
                     /locus_tag="U0342_001330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2422678.1"
                     /translation="MTKITKRKKITLIILGGIIGLSFILYKPLINYLSEQAANPRGII
                     GEITTKIWSSYFEDLSKWTISNTELSNVTQVLDIGYGGGSNVKNLAELNKNWTIYGVD
                     ISEESYKTATNLNKKAINNGKVELSVQDVASMNYQAGIFDVVYAIQTHMYWDNPKKGF
                     EEIYRVMSQKGVLIVSSEKDKIDYHMDEYKTTATLTVLLKEIGFREVVEKEKGNWVLY
                     TIRK"
BASE COUNT         4760 a         3057 c         3122 g         5354 t
ORIGIN      
        1 agatggtaca gcataagcta gtagaatgcc tattaatcca cttaacgtat ttaaaatgat
       61 atcatctata tctgtagaac gttttggtgg tagcgatata ctttcaaatc ctgtaatcat
      121 cgttgtttgc gcaaattgaa gtagttcgat gccgcaagat gttaagaata tgactaataa
      181 tgtttttccc gcagtgcttg ttattttaaa gtaaagcatg aagaaagaca gtggacataa
      241 caataaaaca ttccctaaaa tttgaataat agtaggcatc gttggtaatg tttgctgaaa
      301 tgtattttct atggtggtaa aaggtattaa gttaatcatt tctttttgaa tatggaaatt
      361 cccagtataa gtactgttta cgaaatcccc aacagctatg taagccacaa ggtgtaataa
      421 gataattata tatagaataa aaacgcaaaa ccatataaag tctatccaat tctttagtct
      481 cgccatgttg gttagtatga tggttgctaa aaaaagtaag caactatttg caatggtatt
      541 gattaaatct gcgttattcc caaattgtag tgcaagcgaa atcccgtaca agagatataa
      601 cgctggcaat aacaacacaa aaaaacggca tttttggacc tgcattctcg tattccaacg
      661 ccttccgttt caaaatcagc tctcagactc tctgaataag ctcctagtat cagtttagca
      721 gatataaaaa tgaaaagaaa gcttgtttgt gcttacattt ttgcaagctt ctgtaaggct
      781 ttcgggttct tattttcttt ttggtaaaaa aagtgctaca atttcttaat gatatttgtg
      841 gaggagacta ggatgaaaga attattaggg ttattaaaag aaggtaacaa atccgcctta
      901 acagcggctc ttgttaacac cgttgtttct attattaaag gtattactta tttttttaca
      961 ggaaatatcg ccatgttcgc ggaaacgtta catagtcttg gagatgcagc aaatcaattt
     1021 tttgttttca tcggctctgc tttaagtaaa aaacggccaa caaaacgctt tccacatggt
     1081 ttcgggcgaa tggttaactt agtgctactt ggtgctgtca ttgttgttgg gataatggct
     1141 tttgagacga ttcgtgaagg ttttgcgcat attatccatc caacaagttc cactggtttc
     1201 cttataaacc ttactgtgct cctactttgt accgtgctag aattttctgt tttagtaaaa
     1261 gcaatgcatg agattgcgca cgatgttggc ttagaatcaa aaggacttcg cttatttaaa
     1321 gacagtatcc taaatctagg taaagcaaaa gctgcaacca aactcgtatt cttggaagat
     1381 tccgttgcaa ctggtggtgg acttcttgcg atgattgcgg ttattatttc tcactttacc
     1441 cctttccatc aagcagaagg tattgcatcc atgttaattg gtgtaatgat gtttatcgtc
     1501 gttggtaaag tctttttgga caatgcggct ggagttattg gcgaatcaga tcaaagtatg
     1561 catttaactg tcggtcagct cgtaatgagt gatcctgatg tgcgcgatat tcaagttcta
     1621 accgttctta aagaaggcga tgttttccat gtcgatgtgg aagtggaatt agatcccatg
     1681 ctcaccctcg ctgaagtgga cgatattaaa gaccgtttgg aagaaagtat cggaaaatta
     1741 cgcggtgttg ctgatgtact tatttcattt gatgaagatg atgccatccg taactgggaa
     1801 tatggggacg gacgttaaaa atagaaaaag ccaagtgcgc ggactgcgac acttggcttt
     1861 ttttagtctc caggattaat aattgctagg acttgatgat cttcccaatt tccatttatg
     1921 cggacatttt gtactgcgag cccttctaaa tggaagccag cttttaaaag gacttgtttg
     1981 gaacgttcat ttttcggcat tactcctgcc tcaattcggt gcaggccaag aatgtcaaaa
     2041 ccaaaatcta ctatcaactc cactgcctcg gttgcataac catttccatt atgctcttta
     2101 tccagaaaat aaccaataaa cgcagattgt aaagattccc gcaaaatact aaataaatta
     2161 atcgtaccaa taagttcatc cgtatcatgg aggaaaatcc cataatagta ctccacatca
     2221 ctcgcagcga aatcttctaa tcgtgaaata agcgattgct gttcttttat cgtataaaaa
     2281 cgatcatccc gctccataga ataaccttca aaaaaagctt tattcgctaa atgaaaagct
     2341 agtttttgat tggcatctgt tatttgaaaa ggtcttaagt aaatccgttc ccccgtaatc
     2401 cgcatcctta tccctcccgc atttttctaa attataagat tgttctgatg tgattgcaag
     2461 tatcactgct aagcttaatt tttctatata cccattttat taaaaaataa acttcccatt
     2521 acgaatacat gtgtgttatt atgttgatgt tggttgtttt tatattattt ttctaaaaaa
     2581 tggaggtttt tttaatgaat gttaatgcgg aaacagaaga cgcaactctc cttctcgatg
     2641 gtttacttca aaacgtggca ataattcgtt ttgatactaa taaaaaagta acttatgcta
     2701 atgccctttt cgcggaggca atgggatact cagaagaaga aatgttgact ttatcccacc
     2761 cggacttatg ctttcctgat tttgtccaaa gtgcaagcta taaagcaatg tggacaaatt
     2821 tgcttgctgg gcaaaaattt caaaataaaa ttgaacgaaa aaatgcacgc ggtgaacgtg
     2881 tttggtttga agcgacttat atcccgatta tacgtgaaga tacggtcgtt ggagtagcca
     2941 aaatcgctac agatattacg agaagagaag aaacggttca tgactttgca tctggtttaa
     3001 aaagcatggc tacaaattta aaagaacatt ccagtgttgg aaaaacgcgc agtgaagctc
     3061 tccttgaact cgtgaaatca atcacgaaag aatccaatga aaataccgat acacttcacg
     3121 atttgcaaac agaagcccaa aatattcacg gcattattaa tacaattaac ggtattgctt
     3181 ctcagactaa tttacttgcc ttaaatgcag cgattgaggc agcacgtgct ggtgacgccg
     3241 gacgtggatt tagtgttgta gcggaagaag ttcgtaaact ttcgagtcgt gtagaagaag
     3301 caattaaaga agtggaaaaa agtgtcaacg gtatcacgca agaaattaat actatctcaa
     3361 gtggtacgga acgtgtcgaa gcaaaagtcg aggaaagcca agaagtgctt attttatctt
     3421 tagaagactt tagccaaatt gaatctgcct ctactgcctt ggatcaaaat gccggtgctt
     3481 tcacaaaaat gatttaaccg actgaaaaaa ggagcgaaga aaccttgaaa cttattggaa
     3541 aacatccttc tggtcgtgcc attattatcc gtttgaacaa ccaagaatac cattatgaaa
     3601 ccgcaaatag ttttggaagt gcgacttcat taacacgagc aaaaacagaa gctagagccg
     3661 atagttttac atctagtgaa atgaaccaag gtttacatat tggtaattgg cactggaaag
     3721 aacttggatg aacgaaaatc ccgtctataa aaatagacgg gattttttat ttacgcattc
     3781 aatgcttgtt ctaattggtc tttaaaggcg gttgccacat caaatacagt aacaaattgg
     3841 aaatcgctca cgttgtaatg gacgacaaac ttattatccc ggtggcgaac cataatggaa
     3901 gagcggactt tatcaccaat tgcgtcccct gcttgggttt cgctataaaa aacccagtga
     3961 gttgcttcga ttggatttgc tgttttttct gtaaggtcgc tttgaatgag ttgttttatt
     4021 tcatcactta attctggcgc gaattcattg tcgatgtagc cgtaccaaat agttcggtag
     4081 tactttgctt caaattcatt cgtttcatca aatagttttt tcatgtttgt ttcctcctat
     4141 taggtgttat ttctattcgt gatacctttt taagcgttct tctaatgtac cagcgtgtaa
     4201 ttcaaacaga tgattatcaa aatcataaaa ataaatggaa cgtccttcac cttggactct
     4261 gggacgttct ggtttcattt ccacaccgag agctttaatc cgctcagtat attcatccac
     4321 ttcctcggat tgaatttgga aagcaatatg attgtaagtt cgctcttgta aagaatctcc
     4381 ttccataatg caaatccaca aaccagctat tagaaaaaat ttttctttgg aaagcgaaaa
     4441 tgttttgtcg ccactagaat agatttcttc tgcattaaaa atattctgta agaaagcagt
     4501 tgttttattc aaatctttca caattaaagt gatatggctt aatcctgaaa tcatgtacca
     4561 ccagtccttt atttatcttt taactgcaag agtactacgg tttccacgtg agctgtttgc
     4621 gggaacatat cgacgggttg catatagcga atgcgatatt tcttcgcgag taaagctaag
     4681 tcacgtgcta atgtggatgg attacaggat acataaacaa gttgttttgc ttccacatct
     4741 agtaatgatt ttattaggcc ttggtcacag ccgcttcttg gtgggtcaac gatgactgcg
     4801 tctgggcgga aaccttcatt tacccatttt ggtaatacgt cttctgcttt cccaacttca
     4861 taataaacat tttcgatgcc attcttctcg gcgtttcgtt tagcgtcttc aatggattct
     4921 ggaataatat ccataccacg aacttctttt acttttccgg caaaagcttg gccgattgtt
     4981 ccaacaccgc aataagcatc tactagtgtt tcactgcctg ttagtacgag tgctttttcg
     5041 acttcttgat aaagtcgctc tgtttggaac gggtttaatt ggaaaaaggc acgagcagat
     5101 agatcgaatt ctagttccat taatttctct tcaatgcttt cttttcctgc taaaaggaac
     5161 gtttcgtcac cgaaaataag tgaggatttt gcttgattca cgttttgcat aatcgaagtg
     5221 acttccggaa gagctgcttc gatttctgca agcatttcgc gttttttagg taacttttta
     5281 ctatttgtaa tgaagacgag ctgtgtttcg ccggttttca cgccagtacg aacgacgata
     5341 gttcggacga taccactgcc agctttttca tcataaattg gcacgccgta tttttctagt
     5401 aagtcgcgaa caaaattcgt tactttgatg gtaacgggtt gttggacgat acaatcttca
     5461 attggaacaa gttggtgaga attggcaccg aaaagccctg tttcgacttg accactgcct
     5521 accattcttg tttggaattg gcttttatta cggtaacgcc atgggtcttc cattccgatt
     5581 gttgggcgga tttttaattt ggttggatcg atttttgtat gtttttcgat tgattgaata
     5641 acaatatctc tttttagttc aagttgggcg ctataggcca catgttgcaa ctggcaacca
     5701 ccacacgcct cgtaaactgg gcaaggtgcg gtaactcggt ttggagattt tttacgaatt
     5761 ttatttaatt ttgcttcggt gaaacgatca cgaactttga ccgcttcgac aactacttct
     5821 tcaccggtaa ttgcgccagg tacaaataca actgcttttt taaagtagcc gattccttcc
     5881 ccgttgattc ccatgcgccg aatagttagc gggaattttt gtccttcttc tactggattt
     5941 tgattcatta ttttcctcca tcattccaag tcttcattaa tactaacaaa aaaacagcag
     6001 cttgtcagta gtttatggca tgatttcaag actttcatcg acaaggatgc ttttttcgac
     6061 agaacgaacc atcgaacagt atttcggtgt taattttaat gctttttcaa gtgcttttgg
     6121 atccaaggca gcaccggtta ttttaaaatg aagatgtatc gcgcttatac gattttcttc
     6181 ttctgggatg cgttccattg tggcgtctac ccataagtcg gtaaagttta ctcgtttttt
     6241 ctttaaaatg ttacgaaaaa caatggcgct acaactggca atagacatta acatcaaatc
     6301 cgctggtgaa tattcggtca gtttgtcatc gattaaaaaa cttcctgtgt caaacccatt
     6361 ttcggtataa actagcttta atggttttgt catggttatc cctcatttct tctcttttat
     6421 cgtacaaaaa atctccttat taagcaaatt agtagtataa tgaacagata gtcgaccaaa
     6481 aaaggaggct actcatgtta tggaaggagt aggaaataaa gtgattgttt tagcaggaat
     6541 gattggtgct gggaaaagta gctatacaga gctaatcgca aatgaactcg gaacaaaggc
     6601 attttatgaa agcattaagg ataaccgcat ccttgaaatg ttttatgaag acccaaaaag
     6661 atgggctttt gccttacaaa tatatttttt aaatacccgc tttcgtagta ttaaagctgc
     6721 gttaacggat caaaataatg tgcttgatcg gagcatatac gaggacgcgc tttttacgca
     6781 aattaatttt gaagaaggta acatttcgga gcctgagatg gatacatacc ttgatttact
     6841 cgacaatatg atggaagaac ttgcttatat gccgaaaaaa gcgcctgatt tgttgattta
     6901 tttgcgagga agtttagaca ctgtattgag ccgaattgct ctccgtggtc gtccttatga
     6961 acaaaccttt gataatccag gtttacttga ctattacaag catctgcata gtcgttatga
     7021 cagctggttt gagtcttatg ataagagtga aacccttgtt attaatatcg acgaaataga
     7081 tattaatcaa ccaaatgacg cagattatgt catgcaactt attcatgaaa aattaaaacg
     7141 ctaaaacagg ctttttgctg ttttagcgtt tttttaattg atttcgccta attctttttt
     7201 ctttttccga atcgccagtg tagcgttaag ctccccgcca atcatcaaaa taatgccggt
     7261 caaataaaac cataacatta aaataataat tacaccgata ctgccatatg tggctgaata
     7321 gttgccgaaa ttatttacgt aatacgcaaa acctagcgaa gcaactgtcc aaccgattgt
     7381 tgaaaaaagc gctccaggta gaacactaat caacgtactg cgccggtttg gtgcgaccca
     7441 atataaaaag gtaaatacga caaaaataac gatgagtgta acggtccaac gaagattatt
     7501 ccaaaagcta agaaagtctt ccgagaaatt caaatgatta attaaaaaca tccctatttg
     7561 ttgtccaaat acaagtaata gcaaggttgc ccctactgtc gcaagcattg cgagtgtgaa
     7621 aaacatcgat aataatcgtt gcacgacgta gtttcgctta ttggttacgc catacgcttt
     7681 attgagcgat ttcatgaccg cattcatgcc attcgaggcc gaccataaag tcgcgataat
     7741 cccgatagaa agtaatccgc catttttctg cgttagtaag ttatttaaat tttcttctaa
     7801 aaagtccata atctggtctg gcgcgaattc tttaatcata ttaaaaacgg aatctttatc
     7861 aatatgaaga taggcaagta atgttgccgc gattaagagc attggaaaaa tcgaaaacag
     7921 catataataa gctaactgtg ctgcatttcc tgaaacatca tttcgaccta ctctcgcact
     7981 tactgtttgg ccaatttgaa caatcccgtt tttctttgta tatttaacta cttttttcca
     8041 cactgataag gccccctgtt ctagtcattc gtctggaagt ttttcttcta ctatggtaaa
     8101 attttgtcta ttagcttgaa aggagcaaaa agatgaatct tgaaacccct tcacaggaaa
     8161 acttgaattt tatgttaacc gaaattacaa cgaaactaaa aatggtgaat gttggtgttt
     8221 ttgaaaatct ggagcttgac tctgttgatt ataacgcact tatcgatatt tatcagctaa
     8281 ttaaacgtaa atccaatttc agcccgcgtg agatgcaatt atttgcagaa gaattacgcc
     8341 ggattcgcaa ataaaacaaa ttccagccac tttttagtgg ttttttgttt ggaaataatc
     8401 ggtaccaaaa tccactaaat cacgcatatc ataaattttc gtcggcgctc cgataatcgt
     8461 cgttgggtga aagtcacgtt ctttctcata agcgcgacct aacgcgataa acacttcact
     8521 attataatca atttcctgat acttctccca aatgatttcg ccatttttta gaaaagctgc
     8581 ctggttttcg atgagcggaa atacattgga gcgttcttcc gctaaatgaa gcgatgtatt
     8641 gttattatta tctaccccga acaagataat tttcgcatca agttgataca ttttccctag
     8701 cggcgattca tctcccatgc ttttcgcaag tggctggttg gcaagaattt gttttttatc
     8761 ttttccccaa gcacaaaacg aatggtatgg atgaaaacta cgctcaacat ctggcatagt
     8821 acgaaatgtt tcggcaatga cacccattcc acgagttggt gttacaagcg gatcaaatgg
     8881 cggtgtttct ctgcgaatta ttttccacca actttcagga actggcggat tttcccactt
     8941 tgcaggatca cttaattgac ctgtttgagc cggcattact atattgcctg attcaccaac
     9001 cagttcttgc aatgccaaaa taacggtaac tggaccaccg caaatccagt gtgcttttga
     9061 catggaggca tgaaaaataa tcgtatctcc ctttttaata cccgattctt gtaggtccga
     9121 cacgattttt tgttttgttg ctggcttttt tgttcgccag atagccattt tttctcccat
     9181 tgtatgtcac cgcctctaaa aataaagcca gatgcctaga aaaaaacggc aaactaaaag
     9241 cagctgtgtg aaacttgtgc ttttacttgc attctgttct aaatgcatct ggctaaatag
     9301 tttaattaat cgttttcgcc ttgatacgtt aaaatttctg gaccatcttt tgtgattgca
     9361 aaagtatgtt catattgcgc agacaaagag ccatcaacag ttctagcagt ccagccatta
     9421 tcgtccattt tggctttcca agcacccata ttgaccattg gttccactgt aataaccatg
     9481 ccttctttca agcgaggtcc tttgccagct gtaccgtaat gtgggatatc tggtttttca
     9541 tgtaaagttg gtccaacgcc gtgaccaata aactcacgta caacagcaag attttctgat
     9601 tctacatatg tttgaatagc atgaccaata tcgccaactc gtgcgccaac ttgtgcttgt
     9661 tcaatcccta aataaagtgc tttatgcgtt acatccatta aatgtttcac atcatctggc
     9721 acttcaccta cggcataagt ccaagcagaa tcagcaagtg caccgcgata attcacgacc
     9781 atatctactg taataatatc gccttggtta agcttttgtt tgcgcgggaa gccatgacaa
     9841 atttcgtcat taatacttgc acaaatagca tattcataac cttcaaagcc tttttgctct
     9901 ggagtcgcgc catttttacg taaaaattct tctgtaaata cttctaaatc ccagctagta
     9961 atacctggtt taataatttt tttaagttct ttatgcgtat cggcaaggat tttccctgct
    10021 gctttcatct catcgatttc gcgtcttgat ttgagtgtga tcatcttttc attccctcct
    10081 aaaatttcca ctatttacta ttatagctcg aaacccctta gaaataaagt aatctggaaa
    10141 aaaggttgca gtttttctga agacatttat aatagaatgt atcagttaaa aaatggtggg
    10201 ctggtttgtg ccattttaaa caataaaaaa ttcagaaaat ggtgatgcaa aatgacaaaa
    10261 gtgatgatcg tttatgccag catgactggt aatacacaag aaattgccga cattttaggt
    10321 gaagaattag aaaaatacga tatcgaagta gaaattgaag aatgtatttc agttgatcct
    10381 gaagatttac tagaatatga tggcgctcta atcggtggct atacatacga tgatggtcag
    10441 cttcctgatg agttcgttga tttttatgaa gatatggcgg acgttgattt tagcggcaaa
    10501 gtttgtgctt ctttcggttc cggcgatact ttttatgatg aatactgttt aacagttgat
    10561 ttaattgaaa ctcgtctaaa agagcaaggt gcgaccgttc ctgttgctgg gcttaaagta
    10621 gaccttgatc cagatgaaga agatgttgtt cgcgcggaaa gttacgcaaa aacatttgtg
    10681 gatgtattaa aaggataatt cgaaagcaag tcctcttttt cggacttgct tttttattta
    10741 tttaaaaata gcgaaaacag tagcgtagtg gttgctttac ctcattaatt gagatacaat
    10801 tctcgtattg aataaaaaga ttggagtgat taattatgac agtatttagt gaaaagttag
    10861 aaaagtatgc agaattgatt gtaaaagttg gggtaaatgt ccaacctgaa cagaaagtgg
    10921 taattatggc tccagttgac gcggctccac ttgttcgcct tatttccaaa tatgcttttg
    10981 aagttggtgc agaggatgtc attatggatt ggcgcgatga agaattaggc gcattacgtt
    11041 acaaaaatgc tccactacgc gtttttgaaa gtgctccggt tcaccgtgtt gcagaaaaaa
    11101 cagaacttgc caaagaaggc gcttgtttta tctccatcac ttccgaagat ccggatttac
    11161 taaacggcgt ggatagcaac aaaattgcga cattccagaa aacaatgggt ggtgcaatga
    11221 gcgagtttcg cgagttaatg caagcaaatg ttgtaagttg gacagttgtt gcagcagctt
    11281 cacaagggtg ggcagcaaaa gtattcccag atttaactcc agcagaacaa atggaaacac
    11341 tttgggaagc tatttttgaa acaactcgta tcaatacaga aaacccggta gaaacttgga
    11401 aaaatcacga tcaaacactt gctgcaaaag cagaaagttt aaatgaaaaa caatttactt
    11461 ctttacatta tacggctcct ggaacagacc ttacaattgg tcttccaaaa aaccatcttt
    11521 gggttggcgc tggcagtaag aataaaaaag gacatgaatt tatggccaat atgccaacag
    11581 aagaagtatt ctgttgtgcg gataaactaa aagtggaagg ttatgtttct agtacgaaac
    11641 cacttagtta tgcaggaaat attatcgatg acttcaaaat cactttcgaa aaaggtcgta
    11701 ttgtaggtgt agaagcagca tccggcgaag aaattttgaa agatttaatc gcgactgatg
    11761 aaggctccca ctatttaggt gaagtggctc tagttccaga cccttcccct atttcccaat
    11821 ccggcatttt attctacaat acactatttg atgagaatgc ttctaaccac ttagcaattg
    11881 gtagtgcgta tgcatttaat gttaaaggtg gcgaagaaat gtctcgtgaa gagttagaag
    11941 cagctggtgt gaacaatagt ttaacacacg ttgatttcat gattggttct tctgaaatgg
    12001 acattgatgg tgtaaccgaa tctggtgaag ttgttcctgt tttccgtaaa ggcgactggg
    12061 cgttctaatc cttttttaaa acttatgcct tttgcgtaaa acccttgtag cttttggctt
    12121 tcaagggttt tcgtttgttt attttttaca aaagagagcg aggtgcattg gatgaaattt
    12181 agtacatggg acatcaattt aaaagtaagg ctttttgggg aagcactact cgatatttct
    12241 ttttggatgg tcttcccctt tctaacgatt tacttttcgg aaagtattgg gcgcgagctg
    12301 acgagccttt tgctgattat ttcgcaagtt ttggcggttt tcacagcttt gcttggcggt
    12361 tattttgcgg ataactttgg tcgtaaacgg atgatgagta tttctgtcat tggagaaggt
    12421 tttggttttc ttgtttttgc aataggtgca cttcatgttg tggattctcc ttacttgagt
    12481 tttgctggtt tcgcgattgc gagtgttttt atggcgtttt atcagccagc aagtcaagcg
    12541 atgattgccg atgtggttcc tcctgagcat cggacgcata tttattcggt gttctatatg
    12601 atgattaata ttgcggtcgt tattggcccc attcttggtt cggttttatt ttataatttc
    12661 acgacagaaa cactacttgc aattgtttgt gcggatttat tattactatt tttattgcaa
    12721 aaatttggtc acgaaacagc ccctctttta gttaatcctg atttacaaaa agaagcggtt
    12781 cgaaaaagta ttggtgctgt tttaatggaa cagctaaaaa actataagat tatttttaaa
    12841 gacaagattt tctttcttta tattgttgcc gggattattg tttctcagtc gtttatgcaa
    12901 ctggatttac ttttcccact atatattaaa gaagttatcg gcgcctctaa cttgttcgtg
    12961 tttcatttta caggtgagca attgttcggg gttattgttt ctattaatgg cttctttgtt
    13021 gcagcgctta ctgtcgttgt cactcgctgg atgagccatt ttagagaaaa atttgtcttt
    13081 atgaattctt cttttctcta tgcgattgcg attttcttat ttggtatttc gacaggaccg
    13141 tggggagcga tttgtgccat tattctcttt agcttcgcgg aactgatgac tgttggcttg
    13201 caacaaacct ttgtttcaca gttagctcca gaggataaac gggcgatgta cttctctgct
    13261 gctggacttc gttatacgct gggtaaagtc attgctccac ttgcgattac actttcgact
    13321 ttaattggct atactgggac atttactatt attggtattt tagcgctcat tagcgggctc
    13381 atttattact atatgtattc agaatttgaa aaacagcggc aagtttccta ataaaaaacg
    13441 gctatctact ctggatagtc gtttttgttt gattactttt tttacgattt atttacgaaa
    13501 caccgaaaat acctgtcata tcgccatttt aaattacctt ttcatttcat ccatgtttaa
    13561 ataatgctta tatggtgaaa aaagtctata ctgttagttg tacacctaga atttactcgc
    13621 tatttttaat agaaagttag gtgtgagaat gtttggaaca acaactattg gaattgattt
    13681 aggtactgcg aatattttag tttacagtaa agaaaaaggc attatactga atgaaccttc
    13741 tgtggtcgcg ctaaatacga atgatggaac ggtacttgcg attggccagg aagcaaaaga
    13801 gatgattggt aaaacgccga cttcgatttc tgctgtaaga ccaatgaagg acggtgttat
    13861 tgctgatttt gatttaacga gcggactttt gcgcgagatt atgcgccgga tttcagttag
    13921 tggtgtgaga aagcccaatg tggtcgtttg taccccaact ggtgcaacgt cagtcgagcg
    13981 tcgcgctatt tcagacgcgg taagatcaac tggtgctcgt tcagtcgttt taattgaaga
    14041 acctgttgca gctgcaattg gtgctgattt acctgtcgct gagcctgtcg ctaacgtaat
    14101 tgtagatatt ggtggcggca caagtgagat tgcgattatt tcatacggcg gtgtggtttc
    14161 aagcacttcg attcgcacag gtggcgatca tatggatgaa gaaatcattc aatacatccg
    14221 caaaaattac aaccttttaa tcggtcaaac aacagcagaa cgaattaaaa tggagcttgg
    14281 ttatgcgccg atcgaacacg taacacaaac tgcggatatc cgtggtcgcg atttgcttac
    14341 tggcttacca aaaacaatcc aagtaagctc tacggaaatc caaagcgctt tagctgaaac
    14401 attacaacgt atattagaag ctattcggaa tacgcttgaa ctttgccccc cagaattaag
    14461 tggtgatatt gtcgatcgcg gcattatttt aagtggtggt ggctccctac ttcaaggttt
    14521 ccgcgactgg cttgtacaag aaatagatgt ccctgtacat atggctccaa gtcctttgga
    14581 atccgttgca attggcacag gtagatccct cgtttttgca gataaattag ctaaaaatta
    14641 attgcagtaa gcatctggtc gcatggtaac ccttgcagcc agatgcttct ttatcttgct
    14701 gaaacccctt atttctggta aacttatttc tggtgtctgg ctttctggag tcagataatt
    14761 ttataataag cccatatagt taaacggata taacaagccc ctcctaaggg ctagttcgtg
    14821 gttcgattcc gcgtatgggc gctcagaaaa atccgaaagc acttgataaa tcaagacttt
    14881 cggatttttt atcgttctta tttcaaaact ttattcatac ataaaaagtt acatcctttt
    14941 tcttcgctga aaaattcaac gcatattcag catcatccga aaatggtctg gaagcaattt
    15001 ttactctagt ataatcacaa ttattatttc ttagagctga tttaatcact ttaataccta
    15061 tttcttcatc aacaacgaca caaaatatat ttaaagcaaa ttgcttgtta ggattcgcgg
    15121 tttgacctat gtcaaaacca tctacaatcc ctaaaccttt ccaccccaaa tcgtcattta
    15181 aaacatctgt tactcgatct ttcagccaaa tatcacgttt tgttcttgtt aaacttttga
    15241 gcggatattg aattaatatc cagaaatttt catttggagg attttcgcta taactttgtg
    15301 ggacaaatcg attaataaac gcctcatgga acgcagcttt gctcttgtat ttttccagat
    15361 agttgctggt ttcttctttc tgtcctactt taccaatttt accgaagtgc acaattgcct
    15421 tatcattatt tatccagtac ttagcataca agatttgatt ttgttctttt ttgtatagct
    15481 ttaacatgtt ttcacctcat gatgtataaa attggactct gtattagaga gttttattca
    15541 ttgtaacaga tatttcaaaa gataatataa ctcgcaatta ttttctgatt gtatacaaaa
    15601 cccaatttcc cttttctttc tccactactt ctctaaagcc aatttctttt aagagtactg
    15661 ttagtgtggc agttgtttta tattcgtcca tatgataatc aattttatcc ttttcagacg
    15721 acactattaa aacacctttt tgcgacatta ctcgatagat ttcttcaaac ccttttttag
    15781 gattatccca atacatatgg gtttgtatag cataaactac atcgaaaata cctgcttgat
    15841 aattcatcga tgcaacatct tgtacagata gctctacttt gccattattg attgcttttt
    15901 tattcaaatt tgtggctgtt ttataagatt cttcagaaat atccactccg taaatagtcc
    15961 aatttttatt tagctccgct aggtttttaa cattggagcc cccaccataa ccaatatcta
    16021 atacctgtgt aacattgctt agttcagtat tactaattgt ccacttactc aaatcttcaa
    16081 aataggatga ccatattttc gtagtgattt caccaataat cccacgcgga ttcgccgctt
    16141 gttcgcttaa atagttaatt aatggtttat ataaaataaa actcaaaccg atgatacctc
    16201 ccaaaatgat tagtgttatt ttctttcttt ttgttatttt cgtcataatt aaagtccttt
    16261 catgggtgtt tagttttgaa ataattttaa tta
//
LOCUS       DASEAA010000049        16267 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.049, whole genome shotgun sequence.
ACCESSION   DASEAA010000049 DASEAA010000000
VERSION     DASEAA010000049.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16267
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.049"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            31..798
                     /gene="recO"
                     /locus_tag="U0342_001331"
     CDS             31..798
                     /gene="recO"
                     /locus_tag="U0342_001331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464985.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecO"
                     /protein_id="HEM2422679.1"
                     /translation="MEKCEGIVIRQTSYRESDKIVRMYTREFGKIGVVARGAKKTKSR
                     LAAVTQLFTNGYFTFFGSNGLGTLQQGEVIENFSSIQQDIFMTAYATYVCELLDKATE
                     ERQPNPYLYELTFQILRDINEGYDPQILTQIFEMKMLPVLGLYPTMDKCAICGETTGH
                     FDFSTSSNGIICHRCFEKDRYRMHLPENVVKLLRLFFIFQLDRLGNIDVKPETKEWLQ
                     KAIDTYYDEYSGLYLKSRKFLREMDKWENMLKKDSDD"
     misc_binding    839..1012
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            1080..1970
                     /gene="glyQ"
                     /locus_tag="U0342_001332"
     CDS             1080..1970
                     /gene="glyQ"
                     /locus_tag="U0342_001332"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464984.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit alpha"
                     /protein_id="HEM2422680.1"
                     /translation="MNLQTMIRTLQDYWSEQGCIMLQSYDVEKGAGTMSPYTFLKAIG
                     PEPWKAGYVEPSRRPADGRYGENPNRLFQHHQFQVVMKPSPDNIQELYLGSLEKLGIN
                     PLEHDIRFVEDNWENPSLGCAGLGWEVWLDGMEITQFTYFQQVGGLECFPVTSEITYG
                     VERLASYIQDKENVFDLEWTEGISYRDIFFQAEFENSTYAFETSNTDMLLTLFDTYER
                     EATRQMQDGLVFPAYDYVLKCSHTFNLLDARGVVSVTERAQYIGRIRNLARRIAKTFY
                     ESREKLGFPLVKEEGGKRHE"
     gene            1963..4029
                     /locus_tag="U0342_001333"
     CDS             1963..4029
                     /locus_tag="U0342_001333"
                     /EC_number="6.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464983.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine--tRNA ligase subunit beta"
                     /protein_id="HEM2422681.1"
                     /translation="MSKDFLLEIGLEEMPAKYVTSSVLQLEKRVTDWLKDNQIEFKEI
                     KTYSTPRRLTVLVEEMAEEQANRVEEAKGPAKKIALDDEGNWSKAALGFAKSQKVAPE
                     DLTFREIKGVEYIYIKKEVIGEKTTALLPSLEKVVTSMTFPVSMHWGSNDLRYIRPIK
                     WLIAMFGEEIIPFEITGVSTSNTSRGHRFLGKTATINQPSDYPNALLEQFVVVNASER
                     KQAIVEQLRELETMENWQIREDDDLLEEVTNLVEYPTVLAGNFEKEYLELPEEVLITT
                     MKEHQRYFPVFSQEGELLPHFVTVRNGNHENLDTVARGNEKVLRARLSDADFFYQEDL
                     KITIDEAVAKLQNIVFHEKLGTLTEKMKRVQKVALMLADYLNWQEEDKQDIIRLTNIY
                     KFDLVTNIVGEFPELQGLMGEKYALLQGEKPAIATAIREHYLPSSAEGDLPQTDLGSL
                     IAIADKLETLIGFFCVNIAPTGSADPFGLRRSAFGAVRIIQANGWDIPMLEVVSRIVD
                     MERAEGATELPSSDVIKEVQTFLKNRLRVILQGHHIRHDIIDAVIGGDPNMIPQLIDR
                     AQILNKHADAEWFRPTIEALTRVVNISKKYEDGVEVDPSLFENEYEQALFDKLEKLKF
                     DFAGLKIVDRLKAFADLRTTIDAYFDNTLVMTDNDELKNNRLALLFELASFIKEFAQM
                     DEINVK"
     gene            4064..4888
                     /locus_tag="U0342_001334"
     CDS             4064..4888
                     /locus_tag="U0342_001334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464982.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HEM2422682.1"
                     /translation="MTQPAVYVVSDSTGETAELVTRAALSQFGQTPKFIHRFHHVDSS
                     HMIEEIVDLVAVNNGIIVHTIVLESVREELNKTAQAFGVPIIDLFGPLLNQLEETYKI
                     KPLSEPGRVRSMDEAYFNKVAAIEFAVENDDGRNPRGILQADYVLIGISRTSKTPLSQ
                     YLALKGLKIVNIPIVPEAQIPDELFEIDPKKIIGLKISKQKLTKIRQERLISIGLPGA
                     GTYASNQRIDEELAIFNKLASKLNCFVLDVTNKAIEETANEILIHIGEIVDENLEL"
     gene            5076..5516
                     /locus_tag="U0342_001335"
     CDS             5076..5516
                     /locus_tag="U0342_001335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464981.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaiI/YqxD family protein"
                     /protein_id="HEM2422683.1"
                     /translation="MPKILVDADACPVKAEIKQVAEHFQLDVIFVASFNHYSVNTNGE
                     NWIFVDTGKESADMRMMNLAKKGDIIVTQDIGLASILLAKGTFVFSNRGELYREEEMS
                     LMLDIRYRHAKDRQQGKYSKGPKAMSDQDRSLFKDRLTTFLQNK"
     gene            5536..7416
                     /locus_tag="U0342_001336"
     CDS             5536..7416
                     /locus_tag="U0342_001336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464980.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM2422684.1"
                     /translation="MARIPEEVIDQVRNQADIVDIIGNYVQLKKQGRNYSGLCPFHGE
                     KTPSFSVSPEKQMFHCFGCGKGGNVFSFLMEHDGLNFVESVKKVADMSHLDVAIKLPE
                     ERDTSNLPKETSETAKMVEMHQLTAKLYHYILMETEEGTAALTYLKERGMSEQMMTTF
                     QIGFAPNHHATITAFLEKRGMDLQLAGRAGLLSERDDGQMVDRFRNRIMFPITNDRGQ
                     IIAFSGRLFDRDDGPKYLNSPETPVFNKRRILFHFSEARQAIRKQEEITLMEGFMDVI
                     SAEEAGVQNAVASMGTSLTEEHADLIKRLTNRAIICYDGDRAGIEAAYKAGTLLVERN
                     RLDVFVLQLPAGKDPDDFIRASGPEKFKEVYKQQRMTWTAFKIHYLRRERNLQNETDQ
                     IGYIDDCLREIAKLDQAVERELYLKQLADEFELTIETLKQQLQQSLKNSQKSRQMASY
                     NEPPIDDSFMGMMPQEETEMLFSFEQPTQKLSAHTTSEQQLMKAMMESRDNFLLIKQL
                     LGDTTFYHDNYKALYTYLIGYFAEGNDADPTKFMDSVPDATMKGLISSLEMVISPDEQ
                     GKTQFEDYIRSLKRFKLEQKKKELEQELATLNRENDKDNEIRVMLEIVQLNRQLNSGQ
                     LD"
     gene            7511..8635
                     /gene="rpoD"
                     /locus_tag="U0342_001337"
     CDS             7511..8635
                     /gene="rpoD"
                     /locus_tag="U0342_001337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464979.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sigma factor RpoD"
                     /protein_id="HEM2422685.1"
                     /translation="MSDKTKNTKPVAELSVEQVKEALIEEGKKKGILTYAKIAARLAP
                     FTLDSDQMDEYLEHVGEAGIEVSDDADDEDPDETELVKEETESFDLTDMSVPPGVKIN
                     DPVRMYLKEIGRVDLLTADEEIALAKRIEAGDIEAKGRLAEANLRLVVSIAKRYVGRG
                     MLFLDLIQEGNMGLMKAVEKFDFNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHM
                     VETINKLIRVQRSLLQDLGRDPSPEEIGEEMDLPTEKVREILKIAQEPVSLETPIGEE
                     DDSHLGDFIEDQDATSPSDHAAYELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRT
                     LEEVGRVFGVTRERIRQIEAKALRKLRHPSRSKQLKDFLE"
     gene            8703..9407
                     /locus_tag="U0342_001338"
     CDS             8703..9407
                     /locus_tag="U0342_001338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464978.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (adenine-N(1))-methyltransferase"
                     /protein_id="HEM2422686.1"
                     /translation="MNEEQLSKRLEKVASYITKNERIADIGSDHAYLPCFAVKNQTAS
                     FAIAGEVVDGPFQSAQKQVRSSGLTEQIDVRKGNGLAVIEKKDAIDTIVIAGMGGTLI
                     RTILEEGAAKLAGVTKLILQPNIAAWQLREWSEQNNWLITSEAILREDNKVYEIMVLA
                     PSEKPVTWTKQEIFFGPCLLKEQSAIFKSKWRHEANTWQNIIQTISNNQPVSTENQAK
                     IRELEHKIALVEDVLK"
     gene            9404..10525
                     /locus_tag="U0342_001339"
     CDS             9404..10525
                     /locus_tag="U0342_001339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464977.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nif3-like dinuclear metal center hexameric
                     protein"
                     /protein_id="HEM2422687.1"
                     /translation="MKVANGYEYTAIMEKIAPKKLAMEGDPIGLQVGDLSRKVRKIMF
                     TLDVLEEVVDEAIEKKVDLIIAHHPFLYRPTQHIDTTTKQGKMIKKLIKHDITVFAAH
                     TNLDIAQGGVNDILADLLHLQETTMIEETYSEPYCKIAVYVPENELESIRLALVNNGA
                     GQIGTEYTECTFHTTGIGSFKPGANANPTIGEKEALTSVPEVKIEAIFPQYLTHTITK
                     AVKIAHPYEEPAIDVYTLEMQTYKEGLGRVGMLPKKLGMVSFIDKLKTAFAIDNVRFI
                     GDLKTTVHKVAIIGGDGNKFIHQAKATGADVFITGDVYYHTGHDLLAINLPTIDAGHN
                     IEKVMKGYLKNKMEEQAKILDYEAEFIVSEVNTDPFQFC"
     gene            complement(10571..11566)
                     /locus_tag="U0342_001340"
     CDS             complement(10571..11566)
                     /locus_tag="U0342_001340"
                     /EC_number="1.17.7.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-3-methylbut-2-enyl diphosphate
                     reductase"
                     /protein_id="HEM2422688.1"
                     /translation="MEIIKISPRGYCYGVIDAMVIAKNASLDPNLPRPIHILGMIVHN
                     KHVTDAFESIGIYTVDGANREEILDKITTGTVIFTAHGVSPSVKAKAAAKGLTTIDAS
                     CPDVLHTYNLILEKQAAGYEIIYIGKKGHPEPEGAYGTAPDVVHLVETKADIDALSLL
                     SDNIFVTNQTTMSKWDVADLMDYIKEKFPKAIQHQEICMATQVRQEAVAVQAKGADLT
                     IVVGDPRSNNTARLAQVSIEKAGTKAYRIADITELDIEWIKDAKKVAVTAGASTPTQL
                     VREVLLFLEQFDAADKTTWKRAHNKDFERILPKMKNKYMAEKRRQRLAHLKNGGS"
     gene            11712..13019
                     /gene="cshB"
                     /locus_tag="U0342_001341"
     CDS             11712..13019
                     /gene="cshB"
                     /locus_tag="U0342_001341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464975.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD-box ATP-dependent RNA helicase CshB"
                     /protein_id="HEM2422689.1"
                     /translation="MTKKSRFDQFGFQPFIGLAIDKLGFYEPTEVQQKLIPGILKGES
                     IIGQSQTGTGKTHTFILPIINNVNPEKEAVQAVITAPSRELATQIYNEIRKVTKYSEK
                     EIAVQLVIGGTDKQRAIDKLKKQPQIIVGTPGRINDLIREQALFVHTAKTLVIDEADM
                     TLDMGFLNDVDHIAGKMPANLQMLVFSATIPQKLKPFLSKYMENPRYEHIQPKVAASK
                     TVEHRIMATRSRNKLDLLKNVLVGSQPYLAIVFTNTKTTADEVANGLIERGLKVAKIH
                     GDVNPRERKRTMKQIENLDYQYVVATDLAARGIDIQGISHVVNYELPDDLDFYIHRTG
                     RTGRAGHSGIALTLFEPADEDRLNQLEKMGIEFKHVDWKNKEFVTLEDRNRRAKREAK
                     RETADPREIGMRKKAKQKGKPNYKKKINYKMNEIKRRERRKKR"
     gene            13035..13928
                     /locus_tag="U0342_001342"
     CDS             13035..13928
                     /locus_tag="U0342_001342"
                     /EC_number="3.1.21.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464974.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribonuclease IV"
                     /protein_id="HEM2422690.1"
                     /translation="MLRLGSHVSMSGKKMLLGASEEAASYGSNTFMIYTGAPQNTRRK
                     PIEELNIEAGLEHMKAHDMADIVVHAPYIINIGNSVKPETFELGVNFLQSEIERTRAL
                     GAKQIVLHPGAHVGEGADKGIKQIIQGLNEALIHDQDVQIALETMAGKGSECGRTFEE
                     IAQIIDGVTHNELLSVTFDTCHTHDAGYDIVNDFDGVLNEFDKIIGVDRLKVLHINDS
                     KNERGAHKDRHANIGFGHIGFDALHYIVHHPQLADVPKILETPYVGEDKASKKAPYKW
                     EIAMLRNGEFDPDLLNKIQNS"
     gene            13945..14871
                     /locus_tag="U0342_001343"
     CDS             13945..14871
                     /locus_tag="U0342_001343"
                     /EC_number="3.6.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="manganese-dependent inorganic pyrophosphatase"
                     /protein_id="HEM2422691.1"
                     /translation="MTKTLVFGHKNPDTDTICSAISYAELKKAQGADIEAVRLGELNS
                     ETAFVLDYFQVTAPRLVQTVANEVSEVALVDHNERQQSVDDIDDVTVTAVVDHHRIAN
                     FETSDPLYYRAEPVGCTTTILLKMFRENEVEVSKTVAGLMLSAIISDTLLFQSPTCTQ
                     EDKVAAQKLAQIADVDIQSYGMEMLKAGADVSKKTVAELLLDAKEFNMNDNKVEIAQI
                     NVVDVNDVLSRRAEVEALMTQNIVDKGLDLYLFVITNILTNDSVGIAIGSKTAVVEEA
                     YGVKFVENQAPLKGVVSRKKQVVPILTDTFAK"
     gene            15016..15789
                     /gene="zurA"
                     /locus_tag="U0342_001344"
     CDS             15016..15789
                     /gene="zurA"
                     /locus_tag="U0342_001344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter ATP-binding protein ZurA"
                     /protein_id="HEM2422692.1"
                     /translation="MNKIIEVNNVSYHYDKEHALENIHFQVAKGSFTGLIGPNGSGKS
                     TMLKLILGVLKKQQGSISLFGEKQADFKDWVKIGFVSQKSNAFNSAFPATVKEVVASG
                     LTKKKGLFKTLNNKDKEDIDYALKRVEMTDYLHRNIGELSGGQQQRVFIARALVSRPE
                     LLILDEPTVGVDVENVKAFYELLAELNRTEEMTLLLVTHDLMAVNTYVNHVISINKRI
                     IFDGSAHEYQHYLADRELEILAEQRRREDACLDCDASPV"
     gene            15764..>16267
                     /gene="zurM"
                     /locus_tag="U0342_001345"
     CDS             15764..>16267
                     /gene="zurM"
                     /locus_tag="U0342_001345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter permease ZurM"
                     /protein_id="HEM2422693.1"
                     /translation="MIATLLQYDFIRNTFIVGLVIGIVAPLLGSFIVVRKLSLMADAL
                     SHVTLGGIAVSLFLSKTYLPLAALNPLYLGFGFSVVGSLLMEKLRNVYKHFEELAIPI
                     IMSAGMGFSVIFISLANGFNTDLFSYLFGSVSAVSRTDMITIVVTAIIVFIVILSLYK
                     ELFLLSFD"
BASE COUNT         5520 a         2810 c         3272 g         4665 t
ORIGIN      
        1 taagacgtgt aaaaaaggga ggcttaccac atggagaaat gcgaaggaat cgtgatacgg
       61 caaacgagtt accgtgaatc agataaaatt gtccgaatgt atacacgtga atttgggaag
      121 attggtgtgg tggctcgtgg ggcaaaaaaa acgaaaagca gattagctgc agtaactcaa
      181 ttatttacga atggttattt tactttcttt ggtagcaatg gccttggtac gcttcagcaa
      241 ggggaagtca tagaaaattt ttcttctatt cagcaagata tttttatgac tgcttatgcg
      301 acttatgttt gcgaattgct tgataaagcc actgaagaac gccaaccgaa tccatatcta
      361 tatgaattaa cttttcaaat tttgcgagat ataaatgaag gatatgatcc gcaaattctc
      421 actcaaattt ttgaaatgaa aatgttaccg gtgcttggtc tttacccaac aatggataag
      481 tgcgccattt gtggtgaaac aacaggtcat tttgattttt caacaagtag taatggcatt
      541 atctgtcatc gttgctttga gaaagaccgt tacagaatgc atttgccaga aaatgtcgta
      601 aaattgctgc gtttgttttt catcttccaa ttagatagac taggaaacat cgatgtgaag
      661 ccagaaacga aagaatggct tcaaaaagca attgatacat actacgatga atactctggt
      721 ttgtatttaa aaagcaggaa atttttgcgc gaaatggaca aatgggaaaa tatgttaaaa
      781 aaagatagcg atgattgact ttttagcaaa aatacagtat cttttaatat atcaactaat
      841 aggtacgttg aaggaaaata gtaacaaaaa gctctatttt tagcgagtcc gggtttggtg
      901 tgagccggat atttaacttt ttgtgaaggc gttctggagt acagcgaaat caaggtggga
      961 attgttttaa ttccaaatag ggtggaaccg cgagctaact ctcgtcccta tatgctttaa
     1021 atcagcatat agggacgaga gtttttatat tggctgaatt atttttggag gtggaagcaa
     1081 tgaatttaca aacaatgatt agaacattac aagattattg gtccgaacaa ggttgtatta
     1141 tgttgcaatc gtatgatgtg gaaaaaggtg ctggcacaat gagtccgtat actttcttaa
     1201 aagcaattgg tccagagccg tggaaagcgg gttacgtaga gccgtcgcgt cgtcctgctg
     1261 atggtcgtta cggagaaaat ccaaacagat tattccaaca tcaccaattt caagtagtga
     1321 tgaagccttc tcctgacaat attcaagagc tttacctagg ttctttagaa aaattaggta
     1381 tcaatccgtt agaacatgat atccgttttg tagaggataa ctgggagaat ccatctcttg
     1441 gttgtgcggg ccttggttgg gaagtatggt tagatggaat ggaaatcaca caattcactt
     1501 atttccaaca agtaggtggc ttagaatgtt tccctgttac ttccgaaatc acttacggtg
     1561 tggaacgttt agcaagctat attcaagata aagagaatgt atttgattta gaatggacag
     1621 aaggtattag ctaccgtgat attttcttcc aagcagaatt cgaaaactcg acatatgctt
     1681 ttgaaacttc gaatacagat atgctgttga cactttttga cacatatgaa agagaagcca
     1741 ctcgccaaat gcaagacggc cttgttttcc cagcatatga ttacgtattg aaatgttcgc
     1801 atacgtttaa cttactagat gctcgcggcg ttgtttcagt aactgaacgc gcacagtata
     1861 tcggtcgtat cagaaactta gcaagacgta tcgccaaaac attttatgaa tcacgagaaa
     1921 aacttggctt cccattagtc aaagaagagg gaggaaaacg tcatgagtaa agacttttta
     1981 ttagaaattg gtttagaaga aatgccagca aaatatgtga ctagctctgt actacaactg
     2041 gaaaaacgag taactgattg gttaaaagac aaccaaatcg aatttaaaga aattaaaact
     2101 tattctacac caagacgttt aactgtccta gtagaagaaa tggctgaaga acaagctaat
     2161 cgtgtggaag aagcaaaagg ccctgcaaaa aaaatcgctc tagacgacga aggcaactgg
     2221 tcaaaagcag cattagggtt tgcaaaaagt caaaaagttg cgccagaaga tttaactttc
     2281 cgcgaaatta aaggtgttga atatatttat attaaaaaag aagtaatcgg cgaaaaaaca
     2341 acggcgttac ttccaagctt agaaaaagta gtaacaagta tgactttccc agtaagtatg
     2401 cactggggta gtaatgattt acgttatatt cgtccaatca aatggcttat cgcaatgttt
     2461 ggcgaagaaa ttattccatt tgaaatcact ggtgtctcaa ctagtaatac atcccgtgga
     2521 catcgtttct taggaaaaac agctacaatc aaccaaccga gcgactatcc aaatgcatta
     2581 ttagaacaat ttgtcgttgt taatgctagt gaacgcaaac aggctattgt agaacaatta
     2641 cgtgaactag aaacgatgga aaattggcaa atcagagaag atgacgactt attagaagaa
     2701 gtaactaatc ttgtcgaata tccaactgta ctagcaggta attttgaaaa agaatatctg
     2761 gaactacccg aagaagtttt aattacgacg atgaaagaac accaacgtta cttcccagtt
     2821 ttcagccaag aaggagaatt gttgcctcat tttgtaaccg ttcgtaatgg taaccatgaa
     2881 aatctagata cagtggcacg aggaaacgaa aaagtactac gcgctcgttt gtcagatgct
     2941 gatttcttct atcaagaaga tttaaaaata accattgatg aagcagttgc taaattacaa
     3001 aatatcgttt tccatgaaaa attaggcact ttgacagaaa aaatgaaacg agtgcaaaaa
     3061 gtggcattaa tgcttgctga ttatttaaat tggcaagaag aagataaaca agacattatc
     3121 cgcttaacaa atatttataa atttgattta gtaaccaata tcgttggtga attccctgaa
     3181 ctacaaggtt taatgggcga aaaatatgca ttgttgcaag gcgaaaaacc agcaatcgca
     3241 acagctattc gtgaacatta tttaccaagc tcagcagaag gcgatttacc acaaacagac
     3301 ttaggttcac ttatcgctat tgcagataaa ttagaaacat taattggctt cttctgtgta
     3361 aatattgcac caacaggctc tgctgatcca tttggtttac gtcgtagtgc ttttggagcg
     3421 gtgcgtatta tccaagcaaa tggttgggac attccaatgc ttgaagtggt ttctcgtatt
     3481 gtggatatgg agcgtgcaga aggggctaca gaactaccaa gttcagatgt aataaaagaa
     3541 gtgcagactt tcctaaaaaa tcgtttgcgt gttattttac aaggccatca tattcgccat
     3601 gatattattg acgctgttat cggcggcgat cctaatatga ttcctcaatt gattgatcgt
     3661 gctcaaatat tgaataagca tgcggacgca gagtggttcc gcccaactat cgaagcctta
     3721 acacgagtag ttaatatttc taaaaaatac gaagatggcg tagaagtgga tccgagccta
     3781 tttgaaaatg aatacgagca agccctattt gataaattag aaaaactaaa atttgatttt
     3841 gctggtttaa aaattgttga cagactaaaa gcatttgcag atttacgtac aacaattgat
     3901 gcatatttcg ataacacgct agttatgact gataatgatg aattgaaaaa taatcgtctt
     3961 gcactattat tcgaacttgc aagctttatt aaagagtttg ctcaaatgga tgaaattaat
     4021 gtaaaataaa aggaagattt tgagcaaaga ggaggaagta tgtatgactc aaccagccgt
     4081 atacgtggtt tccgattcaa caggagaaac ggccgaacta gtgacaagag cagcactaag
     4141 tcaatttggt caaacaccga aatttatcca tcgttttcac cacgtcgatt cttctcatat
     4201 gattgaagaa attgttgact tagtggcagt gaacaatggc ataatcgtgc acaccattgt
     4261 actcgaaagc gtccgtgaag agcttaataa aactgctcaa gctttcggcg taccgataat
     4321 tgacttattt gggccgcttt taaatcagtt agaagaaacc tacaaaatca aaccactttc
     4381 tgaacctggc cgcgttcgtt ctatggatga agcttatttc aataaagtag ccgcaatcga
     4441 atttgccgta gagaatgacg acggccgtaa tccaagaggt attttacaag cggattatgt
     4501 tttaatcggt atttcaagaa cttcaaaaac tcctttatcg caatatttgg cgcttaaagg
     4561 attaaaaatc gtcaatattc caatcgttcc agaagcacaa atcccagatg aactttttga
     4621 aattgaccct aaaaaaataa ttggtctaaa aattagtaaa caaaaattaa cgaagattag
     4681 acaagagcgt ttaatatcga ttggtttacc tggtgctggt acttatgcaa gtaatcaacg
     4741 aattgatgaa gaattagcga tttttaataa actagccagt aaattaaatt gtttcgtgtt
     4801 agacgtgact aataaagcca ttgaagagac tgcaaacgag attttaatcc atattggtga
     4861 aattgttgat gaaaatttag aattataaga aggactttta ctttttatgg cgaatatata
     4921 tattatacgg ggaaaactgc ttgtaaaaat tagttacttc ccgtataatc taaattcgcg
     4981 tgtgaaaaag ccaaatctac gaataatatt aaaaaaacgg gttaaaaact cgttttttaa
     5041 cttgccttca tagattttaa gagaggatgg aatatgtgcc aaaaatttta gttgatgccg
     5101 atgcttgccc ggtaaaagca gaaataaaac aagtcgccga acattttcag ttagacgtta
     5161 tttttgtggc ttcttttaac cattactctg taaatacaaa cggagaaaat tggatttttg
     5221 tggatactgg aaaagaatca gcggatatgc gaatgatgaa tttagccaaa aaaggcgata
     5281 ttatcgtaac acaagatatt ggcctagcta gtattctact tgcaaagggt acatttgtct
     5341 tttctaatcg cggcgaactt taccgagaag aagaaatgtc attaatgtta gatattcgct
     5401 atagacatgc caaggacagg caacaaggta aatatagcaa aggtccaaaa gcaatgagcg
     5461 atcaagatcg ttctcttttc aaagaccgat tgacgacatt tttgcaaaat aagtaaatag
     5521 gagttgactg tcaaaatggc gcggattcct gaagaagtaa ttgatcaagt ccggaatcaa
     5581 gcggatatag tcgatattat cggtaattat gttcagttaa aaaaacaagg acgtaattat
     5641 tctggcttat gtcctttcca cggtgaaaaa acgccatcct tttctgtctc accagaaaaa
     5701 cagatgttcc attgttttgg ttgtggtaag ggagggaatg ttttttcttt tctaatggag
     5761 catgacggac tcaattttgt tgaatcggta aaaaaagtgg cagacatgag tcatttagat
     5821 gtggctatca agctccctga agaacgagat acaagtaatt tgccaaaaga aacttctgaa
     5881 acagcaaaaa tggtggaaat gcaccagctt actgccaaac tttaccatta tattttaatg
     5941 gaaactgaag aaggtacagc agcattaact tatttaaaag agcgtggtat gtctgaacag
     6001 atgatgacca ctttccaaat tggttttgcc cctaatcacc atgcaacaat tactgctttt
     6061 ctagaaaaac gtggcatgga tttacaatta gctggcaggg ctggactttt gtccgaacgt
     6121 gatgatgggc aaatggtgga tcgttttcgt aatcggatta tgtttccaat tacgaatgat
     6181 cgtggacaaa ttattgcctt ttctggccgc ttatttgatc gtgatgatgg tcctaagtat
     6241 ttaaatagcc ctgaaacacc tgttttcaat aaaagacgaa tattgtttca tttttcagaa
     6301 gcaagacaag ctattagaaa acaagaagaa attacgctca tggaaggatt tatggatgtt
     6361 atttccgcag aagaagcagg tgttcaaaat gcggtagctt cgatggggac aagcttaacg
     6421 gaagaacatg cagatttaat taaacggctt actaaccggg cgattatttg ttatgacggt
     6481 gacagagccg gaattgaagc agcctataag gcgggcacac ttctagttga acggaatcgt
     6541 ttagatgttt ttgttttgca acttccagct ggaaaagatc ccgatgactt tattcgagca
     6601 agtggtccag aaaaattcaa agaagtttat aagcaacaac gaatgacttg gacagctttt
     6661 aaaattcatt atttacgtag agaacgtaat ttacagaatg agacagatca aattggttat
     6721 attgatgatt gtttacgcga aattgcgaaa ctagatcaag ccgtcgaacg cgaattatac
     6781 ttaaaacaac tagcagatga atttgaatta acgatagaaa cattaaaaca acaactacag
     6841 caatcactaa aaaatagtca gaaatcacga caaatggcta gttataatga accaccaata
     6901 gatgattctt ttatgggaat gatgcctcaa gaagaaacag aaatgctatt ttctttcgag
     6961 caaccaaccc aaaaactatc tgcccataca acctcagagc aacaactcat gaaagcaatg
     7021 atggagagcc gagataattt tcttttaatt aagcaacttc ttggtgacac tacgttttat
     7081 catgataatt acaaagcgct ttatacctat ctaattggtt attttgcaga aggtaatgat
     7141 gcagatccaa cgaaatttat ggatagtgtt cctgatgcta caatgaaagg acttatcagt
     7201 agcctcgaaa tggttattag tcccgacgaa caagggaaaa cccagtttga agactatatt
     7261 agaagtctaa agcggtttaa attagaacaa aagaaaaaag aacttgagca agagctagcg
     7321 actttaaatc gtgaaaatga caaagataac gaaattcgtg tcatgctcga aatcgtccaa
     7381 ctcaaccgtc agttaaacag cggccaattg gattaataac gttttaaaac cgctaaatga
     7441 tggtattatt acctaagaga agccttttaa taaggttagc ggcattttgg aaggaggaat
     7501 acaggcagtt atgagtgata aaacaaaaaa cacaaaacca gttgctgaac taagtgttga
     7561 gcaagtaaaa gaagccctga tagaagaagg taagaaaaag gggattttaa cttatgcaaa
     7621 aatcgctgcc agattagctc cattcacttt ggattccgat caaatggatg agtatttaga
     7681 acatgttggt gaagcaggaa ttgaagtttc tgacgatgca gatgatgagg atccggatga
     7741 aacagaactt gtaaaagaag aaaccgaatc ctttgattta acagatatga gtgtaccacc
     7801 aggcgtaaaa attaatgacc ctgttcgcat gtatctgaaa gaaattggtc gagtagactt
     7861 acttacagcg gatgaagaaa ttgccttagc aaaacgtatc gaagctggcg acattgaagc
     7921 caaaggacgt cttgcagaag ccaacctgcg ccttgttgta agtattgcaa aacgttatgt
     7981 tggtcgcggt atgttattcc ttgatttaat tcaagaaggt aacatgggac taatgaaagc
     8041 cgttgagaaa ttcgacttca ataaaggatt taaattcagt acctatgcaa cgtggtggat
     8101 tcgtcaagcg ataacccgtg cgattgcgga ccaagctaga acaatccgta ttccggtgca
     8161 tatggttgaa acaatcaaca aactaatccg tgtacaacgc tccttattac aagatttagg
     8221 ccgcgatcct tcaccagaag aaattggtga agaaatggac ttaccaactg aaaaagttcg
     8281 ggaaatcctt aaaatcgcac aagagccagt ttcccttgaa acaccaattg gtgaagaaga
     8341 cgattcacat ctaggcgatt ttatcgaaga ccaagatgca acttcaccat ccgatcacgc
     8401 agcatacgaa ttactaaaag aacaattaga agatgtgctt gatacattaa ctgaccgtga
     8461 agaaaatgta cttcgcttac gttttggtct agatgatggt cgtacgcgca ctttagaaga
     8521 agttggtcgt gtatttggtg taactcgtga acggattcgt caaattgaag ccaaagcttt
     8581 acgtaaatta cgtcatccga gccgtagcaa acaactaaaa gacttcctgg aataaagcac
     8641 aaccgggcag gaggacaaac cgttctcctg cctttttaat gaaaatgaaa gtagggaacc
     8701 aaatgaacga agagcaatta tcgaagcgac tcgaaaaagt ggcttcttac ataacaaaaa
     8761 atgaacgaat cgcagacatc ggaagcgatc atgcttattt accttgtttt gcagttaaaa
     8821 atcaaacggc ttcgttcgct attgctggcg aagtagttga tggacctttt caatctgcac
     8881 aaaaacaagt tcgttcttct ggcttaacag aacaaattga cgttagaaaa gggaacggtt
     8941 tagctgttat cgaaaaaaag gatgcgattg atacaattgt gattgcaggc atgggtggca
     9001 cgttgatacg tactatttta gaggaaggtg cagcaaaatt agccggtgta accaaactaa
     9061 ttttacaacc taatattgca gcctggcaat taagagagtg gtccgaacaa aacaattggc
     9121 ttattacttc tgaagcaatt ttacgcgaag ataataaagt ttatgaaatc atggtgttag
     9181 ctccgtctga aaaaccagtt acttggacta agcaagaaat atttttcgga ccatgcttat
     9241 taaaagaaca aagcgccatt ttcaaaagca agtggcgcca tgaagcaaat acatggcaaa
     9301 atattattca gactatttct aacaaccaac cagtttcaac agaaaaccaa gcgaaaattc
     9361 gtgaattaga acataaaatc gcattagtag aggatgtgct aaaatgaaag tcgcaaatgg
     9421 ctatgaatac acagcaataa tggaaaaaat cgcacccaaa aaacttgcaa tggaaggcga
     9481 tcctattggt ttgcaagtag gagatttatc gagaaaagta agaaaaatca tgtttacctt
     9541 agatgtattg gaagaagttg ttgatgaagc tattgagaaa aaagttgatt taattattgc
     9601 tcaccatccg tttctatatc ggccaacgca acatatcgat acgacaacta aacaaggaaa
     9661 aatgattaaa aaattaatca aacatgatat tactgtattt gccgcacaca caaacctaga
     9721 tattgctcaa ggtggtgtaa acgatatttt agcagattta ctccatttac aagaaacaac
     9781 gatgattgag gaaacctatt cagaaccata ttgcaaaatt gctgtttatg ttccagagaa
     9841 tgaattagaa agcattcgtt tagctcttgt aaataatggt gccggacaaa tagggacaga
     9901 atatacagaa tgcacattcc acacgaccgg gattggttct ttcaaaccag gagcaaacgc
     9961 taacccaact atcggcgaaa aagaagcact gacttctgtt cctgaagtta aaatagaagc
    10021 tatattccca cagtatttaa cccatactat cactaaagca gttaaaattg ctcatccata
    10081 tgaagaacct gcgattgatg tatatacgct tgaaatgcag acttataaag aaggattagg
    10141 tcgcgttgga atgcttccaa aaaaactcgg catggtttca tttattgata aattaaaaac
    10201 tgctttcgct attgataatg tccgttttat tggggattta aaaacaacag tccataaagt
    10261 agcaatcatt ggtggcgatg gaaataaatt tatccatcaa gcaaaagcca ctggtgcaga
    10321 tgtttttatt accggtgatg tttattatca cacgggacat gatttattag ctattaatct
    10381 tccaactatt gatgctggcc ataatatcga aaaagtgatg aaaggctatc ttaaaaataa
    10441 aatggaagaa caagcaaaaa ttttggatta tgaagcagaa tttattgtat cagaagtaaa
    10501 tacagatcca ttccaatttt gttgataaaa aaaccgagta actcccttaa ataaaggagt
    10561 tgctcggttt ttagcttccg ccatttttta agtgagctag ccgttgacgt cttttttcag
    10621 ccatgtactt attcttcatt ttgggaagaa tacgctcaaa gtccttatta tgcgcacgtt
    10681 tccaagtagt tttatctgcc gcatcaaact gctccaaaaa caatagcact tcacgaacaa
    10741 gttgtgttgg cgtacttgct ccggctgtaa ctgctacttt ttttgcgtct ttgatccact
    10801 ctatatctaa ttccgtaata tcggcaattc ggtacgcctt tgtgccagct ttctctatcg
    10861 aaacttgggc taaacgagca gtattattac ttctaggatc gccgacaaca atagttagat
    10921 cagcaccttt ggcttgtact gcaacagctt cttgccgcac ttgagtggcc atacatattt
    10981 cttgatgttg aatagctttc gggaattttt cttttatata atccattaaa tcagcgacat
    11041 cccatttgct catcgttgtt tggttcgtca caaaaatgtt atcggaaagt aatgaaagag
    11101 catcaatgtc tgcttttgtt tctactaggt gaacaacatc aggcgctgtt ccgtatgcgc
    11161 cttctggttc aggatgtcct ttttttccta tataaataat ttcatagcca gccgcttgtt
    11221 tttctaaaat taaattatag gtatgaagta catctgggca ggatgcgtcg attgtcgtta
    11281 agccttttgc tgctgccttc gctttgacag aaggagagac accatgtgcg gtaaatataa
    11341 ccgttccagt ggttatttta tctaaaattt cttctcgatt agcgccatct actgtataaa
    11401 taccaatgga ttcaaatgca tcagtaacat gtttattatg aacaatcata cctaaaatat
    11461 gaattggtcg aggcaagttc ggatcaagtg atgcattttt agcaatcacc atcgcatcga
    11521 tgactccgta gcaataacca cgaggagata ttttgataat ttccattcga aaacatcctc
    11581 atttctgttt tagattcttt atttagtata atagacttag cctgttttga caaagttgtc
    11641 ttaacacgcg cacgaatgtc caattatgtg ctataatggc tactaggtat agaacggagt
    11701 ggaaatattt tatgacgaag aaatcaaggt ttgaccaatt tggctttcaa ccttttattg
    11761 gacttgcaat agataaatta ggattctatg agccaacaga agtacaacag aagctaattc
    11821 caggcatttt aaaaggggaa agtatcattg gccaatctca aacaggtaca gggaaaaccc
    11881 atacttttat tttgccaatt attaacaatg tgaatcctga aaaagaggca gtacaagcag
    11941 ttattacggc accaagtcgt gagcttgcta ctcaaattta taatgaaatt cgcaaagtaa
    12001 ccaaatacag tgaaaaagaa atcgctgtac aacttgttat tggtggcaca gacaaacaac
    12061 gtgcgattga taaactgaaa aagcaaccac aaatcattgt cggaacgcct ggtcgtatca
    12121 atgacttaat tcgtgagcaa gcgttatttg ttcatacagc gaaaacgctc gttattgacg
    12181 aagcagatat gacacttgat atgggcttct taaacgatgt cgaccatatt gctggaaaaa
    12241 tgccggctaa tttacaaatg cttgtttttt ccgctacaat tccgcaaaaa ttaaaaccat
    12301 ttttaagcaa atatatggaa aatccacgtt atgagcatat tcagccaaaa gtggctgctt
    12361 caaaaacagt ggaacatcgc attatggcca ctcgtagccg taataaactt gatttactta
    12421 aaaatgtttt agttggttca cagccttatt tagcgattgt ttttacaaat acaaaaacaa
    12481 cagctgatga agtagcaaac ggtttaatcg aacgtgggct aaaagtagcg aaaatccatg
    12541 gtgatgtaaa ccctcgtgaa cgtaaacgga cgatgaaaca aatcgaaaac ttagattatc
    12601 aatatgttgt tgcgacagat ttagctgctc gtggtattga tattcaagga attagtcatg
    12661 tcgtgaacta tgagttgccc gatgacttag atttctacat tcaccgtact ggtcgtactg
    12721 gtcgtgccgg acattctggt attgcactta cattatttga accagctgat gaagaccgct
    12781 taaaccaatt agaaaaaatg ggaatcgaat ttaagcacgt tgactggaaa aataaagaat
    12841 ttgttacact tgaagaccgc aaccgccgtg ccaaacgtga agcgaaacgc gaaacagctg
    12901 accctcgtga aatcggtatg cgtaaaaaag caaaacaaaa aggtaaacca aactataaaa
    12961 agaaaattaa ctacaaaatg aacgaaatca aacgtcgtga aagacggaaa aaacgataag
    13021 tgaggaatga atttatgcta agattaggtt ctcatgtatc aatgagtggt aagaaaatgc
    13081 ttcttggcgc aagtgaagag gcagcttctt atggctcaaa tacgtttatg atttatactg
    13141 gcgctccgca aaacacgcgt agaaagccaa ttgaagaatt gaatattgaa gccggcttag
    13201 aacacatgaa agcacatgat atggctgaca tcgtcgttca cgcgccgtat atcatcaata
    13261 ttggcaattc agtgaagcca gaaacctttg aactaggtgt taatttcttg caatctgaaa
    13321 ttgaacgtac gcgtgcgctt ggtgccaagc aaatcgtact tcatcctggc gctcatgttg
    13381 gtgaaggggc agacaaaggg attaaacaaa ttatccaagg tcttaacgaa gcattaatac
    13441 atgatcaaga tgtacaaatt gctttagaaa caatggctgg aaaaggttct gaatgcggac
    13501 gtacttttga agaaattgct caaattattg atggcgtaac gcataatgaa ttattatccg
    13561 ttactttcga tacttgtcac acacatgatg ctggttacga tattgtaaat gattttgacg
    13621 gggtgttaaa tgaattcgat aaaattatcg gtgttgatcg cttaaaagtg ttacatatca
    13681 atgatagcaa gaacgaacgt ggtgcacata aagaccgaca cgctaacatt ggtttcggtc
    13741 acattggctt tgacgcactt cattatattg tgcatcatcc gcaattagcg gacgtcccga
    13801 aaatccttga aacaccttat gttggtgaag ataaggcatc gaaaaaagca ccatataaat
    13861 gggaaatcgc gatgttaaga aatggcgaat ttgacccaga tttattaaat aaaatccaaa
    13921 atagttaaaa aggagacgaa aataatgaca aaaacacttg tattcggtca taaaaatcca
    13981 gatacagata cgatttgttc tgccattagt tacgcagaat taaaaaaagc acaaggagca
    14041 gatattgaag cggttcgttt aggagagctt aatagtgaaa cagcttttgt tcttgattat
    14101 ttccaagtaa cagctccacg cctagttcaa acagttgcaa atgaagtttc tgaagttgca
    14161 cttgttgatc ataatgaacg ccaacaaagc gtagacgata ttgacgatgt aacagttaca
    14221 gctgtagttg accatcaccg tatcgcaaac ttcgaaacat ctgacccact ttattaccgt
    14281 gctgaaccag ttggatgtac aacaacaatt cttctaaaaa tgttccgcga aaatgaagta
    14341 gaagtaagta aaacagttgc aggtctaatg ctttccgcaa ttatttcaga cacacttctt
    14401 tttcaatcgc caacgtgcac gcaagaagac aaagtagctg ctcaaaaatt ggcgcagatt
    14461 gcagatgttg atattcaatc gtatggcatg gaaatgctaa aagcaggagc agatgttagc
    14521 aaaaaaacag tagctgaact cctacttgat gcgaaagaat ttaacatgaa cgataacaaa
    14581 gtagaaattg ctcaaatcaa tgtagtggac gtaaacgatg tgcttagccg tcgcgcagaa
    14641 gtggaagcac ttatgacgca aaatattgtg gataaagggc ttgatttata tctattcgtc
    14701 atcactaata tccttactaa tgactctgtt ggaatcgcta ttggttcaaa aacagcagtc
    14761 gtagaagaag catacggtgt taaatttgtt gaaaaccaag caccacttaa aggcgttgta
    14821 tctcgtaaaa aacaagttgt tccaatttta acggacacat ttgctaaata attatattaa
    14881 cctggaaaag ctaagcaact tttccaggtt ttcttgtcta attttttaat tcgaagtaat
    14941 tacgatttac attttctcta ttattttata tactagtaaa agcggctagc aaatgctgtc
    15001 aaaggagaaa catgaatgaa caaaatcata gaagtaaata atgtaagcta tcattatgat
    15061 aaagaacatg ccttagaaaa cattcatttt caagttgcaa aaggcagttt tactggttta
    15121 attggcccta atggttcagg taaatcaact atgttaaagc taattcttgg tgtactcaaa
    15181 aaacaacaag gaagcatctc cttatttgga gaaaaacaag cagatttcaa agactgggtc
    15241 aaaatcggct tcgtttctca aaaatcgaac gcctttaact ccgcattccc agccactgtg
    15301 aaagaagttg tcgcaagcgg attaacaaag aaaaaaggct tatttaaaac attaaacaat
    15361 aaagataaag aagacatcga ttacgcttta aagcgagtag aaatgacaga ttatctgcat
    15421 cgcaacatcg gggagctctc tggtggccaa cagcaacgcg tttttattgc acgtgcgcta
    15481 gttagcagac cagaactttt aattctagat gagccaaccg ttggagtgga tgtcgaaaat
    15541 gtcaaagctt tttatgaact tttggccgaa ttaaaccgga cagaagaaat gacactttta
    15601 ctcgtgacac atgatttgat ggcagtgaat acgtatgtca atcatgttat tagcattaat
    15661 aagcgtatta tttttgacgg ttccgcacat gaatatcaac attatttggc tgaccgcgaa
    15721 cttgaaatat tagcagaaca gcgtagaagg gaggatgctt gccttgattg cgacgcttct
    15781 ccagtatgat tttattcgta atacatttat tgtaggactt gtgatcggta ttgtagctcc
    15841 attacttgga agttttatcg ttgttagaaa actttcttta atggcagatg cactgagtca
    15901 tgtgacgctt ggtgggattg cagtaagttt atttttaagt aaaacttatt taccattagc
    15961 tgcccttaat ccgttatatc ttggctttgg tttttccgtt gtaggatctt tattaatgga
    16021 aaaacttcgc aacgtctata agcattttga ggaactagca attccaatta ttatgtcggc
    16081 tggtatgggt ttctctgtta tttttatttc cttagcaaat ggctttaata cagatttgtt
    16141 tagttattta tttgggagtg ttagtgctgt tagccgcacg gatatgatta caattgtcgt
    16201 tactgcgatt attgtattta tcgttatttt atctttatat aaagaactat ttctgttatc
    16261 atttgat
//
LOCUS       DASEAA010000050        16233 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.050, whole genome shotgun sequence.
ACCESSION   DASEAA010000050 DASEAA010000000
VERSION     DASEAA010000050.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16233)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16233)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16233
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.050"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(158..1084)
                     /gene="cysK"
                     /locus_tag="U0342_001346"
     CDS             complement(158..1084)
                     /gene="cysK"
                     /locus_tag="U0342_001346"
                     /EC_number="2.5.1.47"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine synthase A"
                     /protein_id="HEM2422694.1"
                     /translation="MTIANSITDLIGKTPIVKLNRLPEAGSADVYVKLEFQNPGGSVK
                     DRIANAMIESAEKSGALKPGDTIIEPTSGNTGIGLAMVAAAKGYQAIFVMPETMSLER
                     RKLLQAYGAKLVLTPGPDGMKGAIAKAEELAKENNYFVPQQFHNPANPAVHEETTGPE
                     IVEAFGKDGLDAFIAGVGTGGTVTGVGHVLKKNYPDVKIYALEPEESPVLSGGSPSPH
                     KIQGIGAGFVPDTLDTKVYDGILKVSSEDALETAREVAKKEGILVGISSGATVKAALD
                     LAKELGAGKKVLAIVASNGERYLSTPLYNFED"
     gene            complement(1200..2084)
                     /gene="hslO"
                     /locus_tag="U0342_001347"
     CDS             complement(1200..2084)
                     /gene="hslO"
                     /locus_tag="U0342_001347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Hsp33 family molecular chaperone HslO"
                     /protein_id="HEM2422695.1"
                     /translation="MSDYLVKALAYDGMARVYAAVTTETIKEAQRRHDTWSVSSAALG
                     RTMTGTLFLGAMQKEDQKITVKIEGDGPIGPIVADSNAQGQIRGYVTNPHVHFSELNE
                     AGKLDVRRGVGTSGMLSVVKDLGFGENFTGQTPIVSGEIGEDFTYYLATSEQINSSVG
                     VGVLVNPDDTIEAAGGFMLQLLPGATDEIIDEIEKNLTALPTVSRMIEAGETPESILA
                     KLAGGEDKLQILEKIPVSFECNCSKERFGSAIISLGKEEIRSMIEEDHGAEAECHFCR
                     NTYDFSEEELEKLYEEAK"
     gene            complement(2100..2879)
                     /locus_tag="U0342_001348"
     CDS             complement(2100..2879)
                     /locus_tag="U0342_001348"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type III pantothenate kinase"
                     /protein_id="HEM2422696.1"
                     /translation="MILVIDVGNTNCTVGVYEKQKLLKHWRMTTDRHRTSDELGMTVL
                     NFFSYANLTPSDIQGIIISSVVPPIMHAMETMCVRYFNIRPLIVGPGIKTGLNLKVDN
                     PREIGSDRIVNAVAASEEYGTPVIVVDFGTATTFCYIDESGVYQGGAIAPGIMISTEA
                     LYNRAAKLPRVDIAESNQIIGKSTVASMQAGIFYGFVGQCEGIIAEIKKQSNASPVVV
                     ATGGLARMITEKSSAVDILDPFLTLKGLELLYRRNKPTTEK"
     gene            complement(2995..5070)
                     /gene="ftsH"
                     /locus_tag="U0342_001349"
     CDS             complement(2995..5070)
                     /gene="ftsH"
                     /locus_tag="U0342_001349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent zinc metalloprotease FtsH"
                     /protein_id="HEM2422697.1"
                     /translation="MNRFFRNAIFYVIIFLVIIGIVASFNSNKEAAKDISYSEFVSKL
                     EDGKVKSVEIQPDRSVYTINGEFKSSDKSSDDKKTGLGQSKTSSTAFTTYALNSDTSL
                     GDLQKTLDKEDVKTTIVPAKQNSGWVTFLTSIVPFVIIFILFFFLMSQSQGGGGGKVM
                     SFGKSKAKLYNDDKKKVRFTDVAGADEEKQELVEVVEFLKDPRKFADLGARIPKGVLL
                     VGPPGTGKTLLARAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFENAKKNAPCII
                     FIDEIDAVGRQRGAGMGGGHDEREQTLNQLLVEMDGFGGNEGIIIIAATNRADVLDPA
                     LLRPGRFDRQIMVDRPDVKGREAVLRVHARNKPLAKSVDLKAIAQRTPGFSGADLENL
                     LNEAALVAARSDKKEIDMSDLDEASDRVIAGPAKKNRVISEKERRTVAYHEGGHVIVG
                     MVLDEAEVVHKVTIVPRGQAGGYAVMLPKEDRFLMTKAELMDRITGLLGGRVAEEVTF
                     GEVTTGASNDFERATELARRMVTEWGMSDKIGPLQFTSGNGQVFMGRDFGSDKGYSDK
                     IAYEIDTEVQSLIRYCYDRAKTIITEHQEQHKLIAETLLKVETLDARQIRSLFDDGVM
                     PPDIDTIDVEAEYPSEKDEEVAGKSFEEEKEELKEEEKIEEPKEEPKEVTSEDAPNIE
                     QTPNDKKDE"
     gene            complement(5417..7363)
                     /locus_tag="U0342_001350"
     CDS             complement(5417..7363)
                     /locus_tag="U0342_001350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional tRNA lysidine(34) synthetase
                     TilS/hypoxanthine phosphoribosyltransferase HprT"
                     /protein_id="HEM2422698.1"
                     /translation="MDDTDKRVHKYIEKHDLIRSDDKLLVAVSGGPDSLALLHFLWNS
                     NLVPKEAISVAHINHHLRENAANEQNVVEAFCESQGIPFYIEEVDVKSRAESLQKGIE
                     ETARIVRYDFFEKVMAEKKINKLALAHHADDQIETILMRLVRGSASIGWSGIQPKREL
                     KGGQAIRPFLPITKAEIIDYAQKHELAYEIDESNTSQEYTRNRYRAQLLPFLKQENPA
                     VYSHFERFSEETSEDFQFLEALASDLLKKNLIKNGKRTTLLLTNFKNEANPLQRRAIH
                     LLLRYLYNEDASFITVNHIYQIIQMIQSDNPSSSIDLPNKLVANRAYDKLHFQFGERE
                     APSEFYHQLELNDRIELDNKASIRLKLKSSVVQTNGLNGMLLDAEEITLPLIVRNRVN
                     GDRMTMKGQAGSKKLKDIFIDAKIPRQERDKLPVITDYTGKILWVPGVKKSAYDREFS
                     RSKKQYIIRYTRNIGGNESMHNDIQKVLISEDELQEKIRELGRELTTEYEGRNPLVVG
                     VLKGATPFMTDLLKRVDTYLEMDFMDVSSYGNGTVSSGEVKIIKDLNASVEGRDVLVI
                     EDIIDSGRTLSYLVDLIKYRKAKSVKLVTLLDKPAGRNVEIEADYVGFVVPNEFVVGY
                     GLDYAERYRNLPYIGILKPEIYSE"
     gene            complement(7470..7898)
                     /locus_tag="U0342_001351"
     CDS             complement(7470..7898)
                     /locus_tag="U0342_001351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein S1"
                     /protein_id="HEM2422699.1"
                     /translation="MSIEVGNKLQGKVTGITNFGAFVELEGGKTGLVHISEVADNYVK
                     DINDILTVGDEVTVKVMNIGDDGKIGLSIRKAVDRPDRPEKSYDRKPKYSKKPAGNYV
                     KPAESFEDIMSKFLKDSDERLTTIKRQTESKRGGRGAKRG"
     gene            complement(8049..8435)
                     /locus_tag="U0342_001352"
     CDS             complement(8049..8435)
                     /locus_tag="U0342_001352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="septum formation initiator family protein"
                     /protein_id="HEM2422700.1"
                     /translation="MKKAKSKVARIENRYIKDTATMEKTRSRRRIALFRRLAFMAIIF
                     AVVGGLLTITYTKQVLTLKEKKEKQVQVDKKMVAMKDEQDSLNEQIKKLHNDDYIAKL
                     ARSEYYLSKDGEIIFNIPEENSKQKE"
     gene            complement(8664..8942)
                     /locus_tag="U0342_001353"
     CDS             complement(8664..8942)
                     /locus_tag="U0342_001353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding S4 domain-containing protein"
                     /protein_id="HEM2422701.1"
                     /translation="MATTMRLDKYLKVSRLIKRRTVAKEVAEKGRIAVNGVTAKPGTN
                     VKSGDELVIRFGPKIVTAKIERLEENAKKEQATEMYTIIKEERTDESR"
     gene            complement(8966..10555)
                     /locus_tag="U0342_001354"
     CDS             complement(8966..10555)
                     /locus_tag="U0342_001354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polysaccharide biosynthesis protein"
                     /protein_id="HEM2422702.1"
                     /translation="MPERSMKRLMKGAAWLTAASLISKILSAVYRVPFQNMVGDVGFY
                     IFQQVYPIYGIAMTLALGGFPVVISKMLAEAEGDVRRQQIIMRAVSRMLRIVSIVIFA
                     FLFLFANPIAIMMGDPALSELIRVISFVFLLMPQLAFMRGFFQGEGDMIPTAISQTVE
                     QIIRVAIILIGAGLALHFNFDLYDAGSMAMSGAFFGGVSGIFILRHFYNKKVRLGEGI
                     QPAVFTNKEEKVGIGRTFLRQSVAICVVSSMLILFQLVDSFQVYRLMSDSGIPDFIAK
                     SLKGVYDRGQPILQLGLVISTGLALALVPMITAARVQDQQKELKRSVLLAIKITLILA
                     GAETIGLIVIMRPLNQMLFQTPDGTFVLQLFMPAVFLSSLIIMLSSILQGFGKITVPA
                     VGVGIGLIVKWVTGGILIPRLATVGASVSTCVGLLVILLICYVSLKQTIRVPFVEKTM
                     LFRLIAALALMAVFPCLFEWLAPLNTRLGSAFQAIVSALVGGGIFLVFSLRYKLLGPK
                     DFVFLPFGSKLLALSKLVARK"
     gene            complement(10586..14125)
                     /gene="mfd"
                     /locus_tag="U0342_001355"
     CDS             complement(10586..14125)
                     /gene="mfd"
                     /locus_tag="U0342_001355"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription-repair coupling factor"
                     /protein_id="HEM2422703.1"
                     /translation="MKGLQQLIYEQKDIRAVLNALDEKEKAQLVTGLTGSSRALFASV
                     VEGASKRPVVFVTHNLYHAQKLYDDLLSLMDVDRLFLYPADELISSELSISSPELRGQ
                     RVEALDFLLSGKPGIVIVPVAGLRKMLPPVSLWKHFNISIVEGEEIDPDVLRQKLVTM
                     GYTMSGMVNTPGEFSVRGGIIDIYPITEEFPIRIELFDTEVDSLRFFDVETQRSTTRV
                     EEFRLLPATEIILDQSYYPDIVKRLEKKMTHTLNELKENEDKQALVENLEEDLEMLRS
                     GVKPDMFFKYIGLAYPDPASLFDYFPKNTAILLDEFGRILETEESLEREEAEWQTETL
                     SRMETVRDVQVSHSFKKLLEANHSPKIYLSLFQKQMASMRVSKTTNIVYKQMQQFHGQ
                     MNVLKTELESWHKNNYAVVILAPNLERAEKMQQTLTDYDMESAILKKESDVPKYGMVQ
                     FVIGTFQNGFELPLAKVAIISETELFNKKIKKVKKRQKLSNAERIQSYSELKVGDYVV
                     HVNHGIARYVGMETLDINGVHKDYLLLVYQGEDKLFIPVDQLDLVQKYVGAEGKSPRL
                     NKLGGAEWKRVKKKVQASVQDIADDLIKLYAEREAEKGYAFSADDEMQREFEEAFPYQ
                     ETEDQLRSISEIKKDMERPRPMDRLLVGDVGYGKTEVALRAAFKAIMDGKQVAFLVPT
                     TILAQQHFETMKERFQGFPIEIGLLSRFRTKKQQTETLKGMKNGTVDVVVGTHRLLSK
                     DVEYQDLGLLIVDEEQRFGVTHKEKIKQMRSKIDVLTLTATPIPRTLHMSMLGVRDLS
                     VIETPPANRFPVQTYVAEQNNVLVREAIERELARDGQVYYLYNRVESITQKADEISAM
                     VPDARVATAHGQMGESELESVILSFLEGEFDVLVTTTIIETGVDIPNVNTLFVQDADR
                     MGLSQLYQLRGRVGRWNRIAYAYFMYQKDKILREEAEKRLSAIKEFTELGSGFKIAMR
                     DLSIRGAGNILGAQQHGFIDSVGFDLYSQMLKEAIEAKKPKEEQKQIVPVEIDIQADA
                     YIPEYYITDGRQKIEMYKRFRNIETLSELEDLQSDMIDRFGEYPEEVEYLFTMTELKV
                     HALEVSIESVKQEQNKITMLFSESGTAGIRGDIVMQIIGEFGRMVGVGMEGTQLKITI
                     NVQNKPLKEWLYQVKSLAEKLRGAMKERASAEN"
     gene            complement(14239..14799)
                     /locus_tag="U0342_001356"
     CDS             complement(14239..14799)
                     /locus_tag="U0342_001356"
                     /EC_number="3.1.1.29"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminoacyl-tRNA hydrolase"
                     /protein_id="HEM2422704.1"
                     /translation="MKLIAGLGNPGKKYERTRHNVGFMVVDELSFRHQTPWKKSKFNG
                     MTSEIIVGGEKMILVKPLTFMNASGECIRPLMDYYNIPIEDVVIVYDDLDLPVGKIRL
                     RQKGSAGGHNGMKSIIQHVKTQEFNRIRVGVSRPLKGEVIHYVLGDFPKAEQPDIIAA
                     IQKSADAIEDFAQTPFIEVMNKYNQK"
     gene            complement(14906..15490)
                     /locus_tag="U0342_001357"
     CDS             complement(14906..15490)
                     /locus_tag="U0342_001357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422705.1"
                     /translation="MLDKSVPHISAIMVNHDATNYPEFHLPEGYSFCFYKDGLEEDWC
                     RLQLETGQVLSMDSIRARFETEFGNEKEKLAKRCVFVEAPNGEIIGTAMLWDGNTFGE
                     MASRIHWVAVLDSHGGKGIAKALLSKILGLNKSSFVYLTTQTGSYQAIYLYQKFGFEK
                     YVGKTPENWKTVNFQEEKEAAWQIIENKIAEHQA"
     gene            complement(15580..16203)
                     /locus_tag="U0342_001358"
     CDS             complement(15580..16203)
                     /locus_tag="U0342_001358"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L25/general stress protein
                     Ctc"
                     /protein_id="HEM2422706.1"
                     /translation="MATTLEVQKRETTQHSEVTRLRSEGKVPGIIYGYKSENVPVSVD
                     SLELIKAVRDNGRNAVFSVTVDGKKLNVLLHEYQVDPLKDVLVHVDLLAVDMNEEVET
                     DVRVVLVGDAPGVKAGGVLQQIIHDVKVSATPEKLPETIELDISSLEIGDVLTTNDLP
                     ENKDYVVQAEEEETVVTVSAPRAEEEPTTTEAPEPEAVHGKDEEPVE"
BASE COUNT         4316 a         3500 c         2950 g         5467 t
ORIGIN      
        1 ggggaaagaa tgaaaatgtt ttgcttgttg ttagcttatg actatatatt aaccaagaaa
       61 agaaagtttc cgctgtgcgt ttgattagaa aatagtaaga aatgcattta tttcttttca
      121 taaaaaaaga acctagaaaa tctaggctct ctgattatta atcttcaaaa ttataaagag
      181 gtgtgcttag gtagcgttcg ccgttacttg caacgattgc tagtactttt ttgccagcac
      241 caagttcttt tgcaaggtct agagctgctt taacagttgc tccggaagaa atacctacta
      301 agataccttc ttttttcgct acttcacgtg ctgtttctag agcatcttca cttgaaactt
      361 ttagaatgcc gtcatacact tttgtatcta atgtatccgg aacgaagcct gcaccgatac
      421 cttggatttt atgaggtgat ggagaaccac cgctaagtac tggggattct tctggttcaa
      481 gagcatagat tttaacatct gggtagttct ttttaagtac gtgtcctaca ccagttactg
      541 ttccacctgt tccaactccc gcgatgaaag catctaagcc atctttaccg aaagcttcaa
      601 cgatttctgg tccagttgtt tcttcatgga cagctggatt tgctgggttg tggaattgtt
      661 gtggaacaaa atagttattt tcttttgcaa gctcttccgc tttagcaatt gcgcctttca
      721 tgccgtctgg acctggtgtt aaaactaatt ttgcaccgta agcttgaagt aatttgcgac
      781 gttctaagct cattgtttct ggcattacga aaatcgcttg gtagcctttt gctgctgcta
      841 ccattgctag gccgatacca gtattcccac tagttggctc aatgattgta tcgcctggtt
      901 ttaatgcacc agatttttca gcgctttcga tcatcgcgtt agcaatacgg tcttttacgc
      961 tgccacctgg attttggaat tctaatttta cgtatacatc cgcgcttcct gcttctggta
     1021 aacgattaag tttcacaata ggtgtctttc caattaaatc agtgattgaa tttgcaattg
     1081 tcattattaa agcactccta tctattttag gtctttcatc tagtttaatt aattccgacc
     1141 tgttttgtca agtttaacct cttttaaaaa ggagcaacca attaggtgct cctttttctt
     1201 tatttagctt cttcgtatag tttttctaat tcttcttctg aaaaatcgta agtgttacga
     1261 caaaaatgac attctgcttc tgcgccgtga tcctcttcta tcatggaacg aatttcttct
     1321 tttccaagtg aaattattgc actgccaaag cgttctttgg agcagttaca ttcaaaggaa
     1381 acggggattt tttctaagat ttgtagttta tcttcgccgc ctgcaagttt agctaaaatc
     1441 gattcaggag tttcgcccgc ttcaatcatt ctagaaactg ttggtagagc cgtcagattt
     1501 ttttcgattt catcaatgat ttcatctgtc gcaccaggga gtaattgcaa catgaaaccg
     1561 ccagctgctt cgattgtatc atctgggtta acaagtactc ctacaccaac ggaggaattg
     1621 atttgttcag atgttgctag gtaatacgta aaatcttcac caatttcacc tgaaacaatt
     1681 ggcgtttgtc cggtgaaatt ttctccaaag cctaaatctt ttacaactga aagcattccg
     1741 gatgttccaa cgccgcggcg gacgtcaagt tttccagctt catttagttc gctgaagtga
     1801 acgtgtggat ttgttacgta tcctctgatt tgaccttgcg cgttactatc agctacgatt
     1861 ggaccgattg ggccgtcgcc ttcgattttt acagttattt tttggtcttc tttttgcatt
     1921 gctccaagga aaagtgttcc tgtcatcgtt ctaccaagtg cggcggatga gacggaccat
     1981 gtatcatgtc ttctttgtgc ttctttgatt gtttcggttg ttactgctgc atatacacgc
     2041 gccatgccat cgtaggctaa cgctttaact aaataatcac tcattatata aaactccttt
     2101 tatttttctg tagttggttt gtttcttcta tatagaagtt ctagaccttt taatgttaaa
     2161 aatggatcta aaatatctac tgcagaagat ttttctgtta tcatccgagc gagcccgcct
     2221 gttgcaacta ctactgggct tgcgttggat tgttttttga tttctgcgat aatcccttcg
     2281 cattggccga cgaaaccata aaagatgccc gcttgcatgg atgccacggt ggatttgccg
     2341 atgatttggt ttgattcagc aatatctacg cgtggtagtt tagcagcgcg gttgtataga
     2401 gcttcggtcg aaatcataat ccctggagcg atggcgccac cttggtatac ccctgattca
     2461 tcgatatagc aaaatgtggt cgcagtgcca aaatcgacta cgataaccgg tgtcccgtat
     2521 tcttctgatg ctgctacggc gtttacgatt cggtcagatc cgatttcgcg aggattatcg
     2581 actttgaggt ttaagccggt ttttattcct ggaccaacga ttaatggtcg gatattaaaa
     2641 tagcgtacgc acattgtttc cattgcgtgc ataatcggtg gaacgacgga cgaaataata
     2701 attccttgaa tatcagaagg agttaaattc gcataagaaa aaaagttcaa gactgtcatt
     2761 cctaattcat cggatgtgcg gtgacgatct gttgtcatgc gccaatgttt cagaagtttt
     2821 tgtttttcat aaactccgac agtacagtta gtatttccaa cgtctattac aagtatcata
     2881 agtttaaata ccgtccttta gaagattttt ctaacgtatc ataacatgtt ttataggaaa
     2941 atccgaataa tatagcttca aaaaagagac tgggaaagcc cagcctcttt gattttattc
     3001 gtctttttta tcgtttggtg tttgctcaat gtttggagca tcttccgaag ttacttcttt
     3061 tggttcttct tttggttctt cgattttttc ttcttctttt aactcttctt tttcttcttc
     3121 aaaagattta cctgctactt cttcgtcttt ttcggaagga tattctgctt ctacgtcaat
     3181 cgtatcgata tctggaggca ttacaccgtc atcaaatagg gaacgaattt ggcgagcatc
     3241 taaagtttct acttttagta atgtttccgc gataagtttg tgttgttctt ggtgttctgt
     3301 aatgattgtt ttagcgcggt cataacagta gcggattaag ctctgaactt ctgtatcaat
     3361 ttcgtaggcg attttatcgg aatatccttt gtcgctaccg aaatcgcggc ccataaatac
     3421 ttgaccgtta ccagaagtga attgaagtgg tccaatcttg tcactcatac cccattcagt
     3481 taccatgcgg cgagcaagtt cggttgcacg ttcaaagtca ttacttgcac cagttgttac
     3541 ttcaccaaaa gtaacttctt cggctacgcg tccaccgagt aaaccagtga tacggtccat
     3601 taactcagct ttcgtcatta ggaagcgatc ttcttttggt aacattacgg cataaccacc
     3661 agcttgtcca cgaggaacaa tggtaacttt atgcacaact tccgcttcat caagtaccat
     3721 tccgacgata acgtgaccac cttcatgata tgcgactgtg cggcgttctt tttcagagat
     3781 aactcgattt ttcttagctg gtccggcaat tacgcggtca ctagcttcat cgaggtcact
     3841 catatctatt tctttcttat cggaacgtgc ggcaacgagt gctgcttcat tcagtaagtt
     3901 ttctaaatcg gcaccagaga atcccggtgt acgttgagcg attgctttta aatcaacact
     3961 tttagcaagt ggtttgttac gagcatgaac gcgaagtact gcttcacggc cttttacgtc
     4021 tggacgatca accatgattt ggcggtcaaa acggcctgga cgaagaagtg ctgggtcaag
     4081 tacgtctgca cggttagttg ctgcaataat gatgatacct tcattgccac cgaaaccatc
     4141 catttcaact agtaattggt ttagggtttg ttcacgttca tcgtgaccgc cgcccattcc
     4201 tgctccacgt tgacgaccta ctgcatcaat ttcatcaatg aaaatgatac atggtgcatt
     4261 tttcttcgca ttttcgaata aatcacggac acggcttgca ccgacaccga caaacatttc
     4321 tacaaagtct gaacctgaga tagagaagaa tggcacgcct gcttcaccgg caaccgcacg
     4381 agctagcaag gttttaccag tacccggagg acctactaaa aggacacctt ttggaatacg
     4441 agcgccgagg tccgcaaatt tacgcggatc ttttaggaat tctactactt caacaagttc
     4501 ttgtttttcc tcgtctgctc cagctacatc tgtgaagcga actttcttct tgtcgtcgtt
     4561 gtaaagtttg gctttacttt taccaaagct cattacttta ccaccgccgc caccttgaga
     4621 ctggctcatt aggaagaaga agaggatgaa gataattaca aaaggtacaa tagaagttag
     4681 gaatgtaacc caaccgctgt tttgtttggc aggtactatt gttgttttca cgtcttcttt
     4741 atcaagcgtt ttttgcaaat cgcctagtga agtatcgctg tttaaagcgt atgttgtgaa
     4801 agcagtgctg cttgttttgc tttgtccaag accagttttt ttatcgtcgg aacttttatc
     4861 gctagattta aattccccat tgattgtata aacactacgg tctggctgta tttctacgga
     4921 tttaacttta ccatcttcta acttactcac aaattctgaa tagctaatat ctttggctgc
     4981 ctctttgttt gagttaaatg aagcaacaat cccgataata acaaggaata ttatgacata
     5041 aaatatcgca tttctaaaaa acctgttcat tccttacctc ctcccacgca agagcttgga
     5101 ttcttacttt ttctggactt ttaccccttt aaaagttgtt tttggctaat agcagattta
     5161 gaaacaattt tttcttcccc tgattattaa aaaacacatc cgtttcgctt ttctcttacg
     5221 aagttattct attattaata tagatttttt aatatttatt gatactattt tcaccttcga
     5281 aaactaagac taatgatagc ataccgaatc tcgattgccc actattttgc atgtttgaca
     5341 tcaatttttt gttttcgttt tctgaaaagc tatctattac attttaacaa aatattgttc
     5401 tgtttgttaa ttaatttcac tcgctgtata tttctggttt taaaatacca atatatggta
     5461 aattgcggta acgttctgca taatccaaac catatccaac gacgaattca tttggtacga
     5521 caaagcctac ataatccgct tcaatttcta catttcgtcc agctggttta tcaagtaaag
     5581 taaccaactt aactgatttt gctttacggt atttgattag gtctactaga taactaagtg
     5641 tacgtccgct atcaatgata tcttcaatta caagtacatc gcgaccttct actgacgcat
     5701 taaggtcttt aatgattttc acttcacccg atgatacagt accatttcca taactggata
     5761 cgtccatgaa gtccatttct aagtatgtgt ctactctttt aagtaaatca gtcataaaag
     5821 gagttgctcc ttttaacacc ccaactacta atgggtttcg tccttcatat tctgttgtta
     5881 actcacgacc tagttcacga attttctctt gtaattcgtc ctccgatatc agcactttct
     5941 gaatatcatt atgcatgctc tcgtttcctc ctatatttcg agtgtaccta ataatgtatt
     6001 gctttttgct acgactaaat tctcggtcat atgcagactt cttcacaccg ggaacccaaa
     6061 ggattttccc agtatagtct gttatcacag ggagcttgtc gcgttcttgc cttggtattt
     6121 tggcatcgat gaaaatatct ttaagtttct tacttcctgc ttgccctttc atcgtcatcc
     6181 tgtcgccgtt cacacggttt cgaacaatca aaggaagtgt tatctcttca gcatccagta
     6241 gcattccatt tagcccattt gtttgaacaa cggaactttt taactttaaa cggatacttg
     6301 ctttattatc taattcaatg cggtcattca gttctagttg atgataaaac tcggaaggag
     6361 cttctctttc tccaaattga aaatgaagtt tatcgtatgc tctgtttgca acgagtttat
     6421 ttggtaagtc aatcgaacta gatggattgt cgctttgaat catttggata atctgatata
     6481 tgtgatttac cgttataaaa ctggcatctt cattgtacag atatctcaat agtaaatgaa
     6541 ttgcgcggcg ttgtaaagga ttcgcttcat ttttaaagtt agtaagtaaa agtgttgtcc
     6601 gtttgccgtt tttgatgagg tttttcttca ataaatcact cgcaagtgcc tccaaaaatt
     6661 ggaagtcttc gcttgtttct tctgaaaatc tttcgaagtg cgaatagaca gctggatttt
     6721 cttgctttaa aaacggtaaa agttgcgctc tgtaacgatt tcttgtgtat tcttgactag
     6781 tatttgattc atcgatttcg tatgccaatt cgtgtttctg ggcgtaatca ataatttctg
     6841 cttttgtaat tggtaaaaaa ggacggattg cttgtcctcc ttttaactcg cgttttggtt
     6901 ggatgcctga ccagccgata ctagcacttc cgcgaactag tcgcattaag attgtctcga
     6961 tttggtcatc tgcatggtgt gcgagcgcta gtttgttgat ctttttctca gccattactt
     7021 tctcaaagaa atcatacctg acaatgcgcg ctgtttcctc gatacctttt tgcaaactct
     7081 cagctcgact ttttacgtct acttcttcta tgtaaaaagg aatgccctgg ctctcgcaaa
     7141 aagcttcgac gacgttttgt tcattcgccg cattttccct taagtggtga tttatatgtg
     7201 cgacggaaat tgcttctttt gggactaaat ttgaattcca taaaaaatgc agtaacgcca
     7261 aagaatccgg accgccagaa actgccacaa gcaatttatc atcggatcgg attaaatcat
     7321 gtttctcgat atacttatgt actcgtttat cggtgtcatc cattcaagaa aaccttcctt
     7381 cgaaattcgg ctctcacatt ttttattaaa aagtgcaccg tattaatgat ccaatacggt
     7441 gcatctactt tacaattaat tttagcgtat tagccgcgtt ttgctcctcg gccgccacgt
     7501 ttagattctg tttggcgttt gatagtagtg agtctttcat cactatcttt caagaattta
     7561 gacattatat cttcaaagct ctcggctggt ttcacatagt tcccagcagg ttttttgctg
     7621 tatttcggct tacgatcgta acttttctct gggcggtccg gacgatctac tgctttacga
     7681 atggacagac caatcttacc atcatcacca atattcatta ctttaacagt aacttcatcc
     7741 cctacagtta agatgtcatt aatgtcttta acatagttat ctgctacctc actaatatgg
     7801 actaaacctg ttttgccacc ttccagctcc acaaatgctc caaaattagt aatcccagta
     7861 actttccctt gtaacttgtt gcctacttcg atcgacataa aaaaatgcgt cctccttaaa
     7921 atatcactct attgcttaat tatagctata ataaaaagag tgtcaaacag tcaaacttac
     7981 aaactccaaa aatactcaac tatattttcc ctttgattta ccatggagaa tgacggctcg
     8041 gctctgactt actctttttg tttcgaattc tcttcaggaa tattaaaaat aatttctccg
     8101 tctttggaca agtaatattc acttcttgct aatttagcta tgtaatcatc attgtgaagt
     8161 ttcttgattt gctcatttag cgagtcttgt tcgtccttca ttgcaaccat tttcttatcc
     8221 acttgcactt gcttttcttt tttctctttg agtgtcaaca cttgtttagt gtatgtgatg
     8281 gttaataacc cacccaccac agcaaagata atagccataa aagcaagtct acggaacagg
     8341 gcaatgcggc gacgactacg agttttttcc attgttgcag tatcttttat gtagcgattt
     8401 tctattctcg ccacttttga tttggctttt ttcatacatc gtccctccca tgttcttatt
     8461 tgctaattgt ctatgatttt cggtagagaa aaaaacgttt cttgcttaaa atgatatcaa
     8521 taaatccggc atttgtctat tggaatccgc taattttatg atatttttct tgactttttg
     8581 acaaaaaatt gtttaccgat ttttatgacc aataaaaaat cgtttgaaat cggctaaata
     8641 gtgccatttc aaacgatttt tctttatcta ctttcgtctg tgcgctcttc tttaataatc
     8701 gtatacattt cagttgcttg ttcttttttc gcattttctt ctaggcgttc gatttttgct
     8761 gtaacgattt taggaccaaa gcgaataact agttcatctc cagattttac attggtacct
     8821 ggtttcgccg tcactccatt taccgcaatg cgaccttttt ctgcgacttc ttttgctact
     8881 gtacgtcttt taattagtcg agatactttt aaatatttat ctaatcgcat ggttgtagcc
     8941 attttattca cctactttat attaattatt tccgtgcaac cagcttacta agcgctagta
     9001 atttggagcc aaacggaagg aaaacaaaat cttttggacc gagtaattta tatcttagtg
     9061 aaaaaacaag gaaaatcccg ccgccaacta acgcactaac aattgcttgg aacgcactac
     9121 cgagtcttgt attgagtgga gctaaccatt caaataggca cgggaataca gccattaacg
     9181 ctaaagcggc aattagccgg aacaacattg ttttttcaac gaaaggcacg cggattgttt
     9241 gttttagtga tacgtaacaa atgagtagaa tcacaagtaa gccaacacat gttgaaacgg
     9301 atgcaccaac tgttgccagt ctcggaataa gaatgcctcc tgttacccat tttacaataa
     9361 gtccaattcc aacgccaact gcaggtacag taattttccc gaaaccttgt aaaatactgc
     9421 ttaacatgat gattagtgag cttaggaaaa cagctggcat aaataattgt aaaacgaatg
     9481 taccgtctgg cgtttggaaa agcatttggt ttaacggacg cataataact atgagtccaa
     9541 ttgtttctgc acctgccaaa attaatgtaa tcttaatcgc taataagacg gagcgtttta
     9601 gttctttttg ttgatcttga actcttgcgg cagtaatcat tgggacaagc gcgagcgcaa
     9661 gtccagttga gatgactaaa cctaattgca agattggctg tccgcggtcg tatacccctt
     9721 ttagcgactt agcgatgaaa tccggaatcc ctgagtcact cattaaacga tatacttgga
     9781 aagaatcaac taattggaat aaaatcagca tggagctaac tacacaaatt gcaacacttt
     9841 gtcgcaagaa cgtgcggcca atacctactt tttcttcttt atttgtaaat actgctggtt
     9901 gaatcccttc cccgagcctt acctttttat tataaaaatg acgcaaaatg aaaatcccgg
     9961 aaaccccacc gaaaaaggca ccactcatcg ccattgaacc tgcatcatat aaatcaaaat
    10021 taaaatgaag tgcaaggccg gcacctatca aaataatagc tactcgaata atttgctcca
    10081 ctgtttgcga gattgcggtc ggaatcatgt caccttctcc ttggaaaaag ccacgcataa
    10141 acgcaagctg tggcataagt aaaaacacga aactgatgac ccgaattaat tcagataatg
    10201 ccgggtctcc catcatgata gcaatcgggt tggcaaatag gaataaaaag gcgaaaatca
    10261 caatacttac aattcggagc atccgtgaga ctgcgcgcat aattatttgt tgtcgtctta
    10321 catcgccttc tgcctccgct aacattttag aaataacaac tgggaatcca ccgagtgcga
    10381 gggtcattgc aattccgtat atcggatata cttgttggaa aatataaaac cctacatccc
    10441 ccaccatatt ttgaaagggt actcggtaaa ctgcgctaag tattttagaa ataagagagg
    10501 ccgcggttag ccaagccgct cctttcatta gtcgcttcat ggaacgttct ggcactccgc
    10561 cacctccttc cttcttaata acttatcaat tttctgcaga tgctctttct ttcatggctc
    10621 cgcgaagttt ttcagccaaa cttttgactt ggtataacca ttcttttaaa ggtttatttt
    10681 ggacgtttat cgtgattttt agttgtgtac cttccatacc cacaccgacc attcggccaa
    10741 attcgccaat gatttgcatg acgatatctc cgcgaatgcc tgctgttccg ctttctgaaa
    10801 atagcatggt aattttattt tgttcttgtt tgacggactc aatgctaact tcgagtgcat
    10861 ggactttgag ttctgtcatt gtgaatagat attctacttc ttctggatat tcaccaaaac
    10921 ggtcaatcat atcgctttgt aaatcttcga gttcgcttaa cgtttcaata ttgcggaagc
    10981 gtttgtacat ctcgattttc tggcggccgt ctgtaatgta atattccgga atataggcgt
    11041 ctgcttggat atcaatttca acagggacaa tttgtttttg ttcttctttt ggctttttcg
    11101 cctcaattgc ttccttaagc atttgcgagt agagatcaaa cccgactgaa tcgataaagc
    11161 catgttgttg cgctccgagg atattaccgg caccacgaat agataagtca cgcatcgcta
    11221 ttttgaaacc tgaacctaat tcagtgaatt ctttaatagc cgataagcgt ttctccgctt
    11281 cctcacgcaa tattttatct ttttgataca tgaagtaagc gtaggcgatt ctgttccaac
    11341 gccctactcg tccgcgcaac tgataaagtt gtgaaagacc catccgatca gcatcttgaa
    11401 caaagagtgt attaacgttt ggaatgtcta cgccggtttc aatgatggtc gtcgttacaa
    11461 gtacatcgaa ttccccttca aggaaactta aaataacaga ctctaattcc gattcaccca
    11521 tctgtccgtg cgcagtggca accctagcat caggaaccat cgcagaaatt tcatctgctt
    11581 tttgcgtaat ggattccact cgattatata gataataaac ttgtccgtcg cgcgctagtt
    11641 cacgttcaat tgcttctcga actaaaacgt tattctgctc cgccacatat gtttgcactg
    11701 gaaaacggtt cgctggcgga gtttcgataa cagagaggtc acgaacgccg agcatggaca
    11761 tgtgtaaagt tcttggaatt ggtgttgcag taagtgttag tacgtctatt ttggaacgca
    11821 tttgtttgat tttttcttta tgagttacgc cgaatcgttg ttcttcatcg acaattaata
    11881 agcctaaatc ttgatactcc acatcttttg ataataaacg atgggtacca acaacaacgt
    11941 cgactgtgcc gtttttcata ccctttaatg tttctgtttg ttgtttcttt gttcggaaac
    12001 ggcttaaaag tccgatttct attgggaaac cttggaaccg ttctttcatt gtttcaaaat
    12061 gttgttgcgc taaaatggtg gtcggaacta agaaggcgac ttgcttgcca tccataattg
    12121 ctttgaaagc agctcgtaag gccacttcgg tctttccgta accaacatct ccaaccaaca
    12181 gacggtccat cgggcgcggt cgttccatat cttttttgat ttctgaaatc gagcgcagtt
    12241 gatcttcggt ttcttgatac gggaaagcct cttcaaattc gcgctgcatt tcatcatccg
    12301 cactaaacgc atagcctttt tcagcttcac gttcggcgta tagtttgatt aaatcgtctg
    12361 cgatatcttg gacggaagct tgtactttct tcttcactcg cttccattca gcgccaccaa
    12421 gtttgtttaa tcttggtgat ttaccttctg caccaacata tttttgaact aaatcaagtt
    12481 gatcgacggg gataaatagt ttatcctctc cttggtaaac aagtagcaag taatctttat
    12541 gcacaccgtt gatatctagc gtttccatgc caacataacg agcgatacca tggttcacat
    12601 gaaccacgta gtcacctact tttaattcag agtaactttg gattcgttct gcattcgaga
    12661 gcttttggcg cttcttcact tttttgattt ttttattgaa cagttcggtt tcacttataa
    12721 tcgctacttt agctaatgga agttcaaaac cattctggaa cgttccgatg acaaactgaa
    12781 ccattccata tttcggcaca tccgattctt ttttcaaaat cgcactttcc atatcgtagt
    12841 cagttaaagt ttgttgcatt ttttcggcgc gctcaaggtt tggggctaaa ataacaacgg
    12901 cataattatt cttatgccaa ctttctagct cggttttcaa cacattcatt tggccatgaa
    12961 attgctgcat ttgtttatag acgatgttag ttgttttcga gacgcgcatg ctcgccattt
    13021 gtttttggaa aagggataag tatattttcg gcgagtgatt tgcttctaat agctttttga
    13081 aagaatgact tacttgcacg tcgcgaaccg tttccattcg acttaatgtt tctgtttgcc
    13141 actccgcttc ttcccgctcc aagctttctt ccgtttctaa aatccgccca aattcatcaa
    13201 gcaaaattgc cgtgtttttt ggaaaataat caaaaagcga ggctgggtca ggataagcca
    13261 gaccgatata tttaaagaac atgtctggtt tcacgccaga acgaagcatt tcaagatctt
    13321 cttctaaatt ttcaactagc gcttgtttat cctcgttttc tttcaattca tttaaagtat
    13381 gtgtcatttt cttttctaag cgtttgacga tatccggata atagctttga tctaaaatga
    13441 tttcagttgc aggcagtagg cggaattctt ccacgcgggt tgtcgagcgc tgcgtttcca
    13501 catcaaagaa acgaagagaa tctacttcgg tgtcaaaaag ttctattcta attggaaatt
    13561 cttctgtaat tggataaata tcaataatcc cgccgcgaac actgaattct cccggcgtat
    13621 ttaccattcc gctcattgtg tagcccattg tcactagttt ttggcgtagt acatctggat
    13681 caatttcttc gccctctaca atggatatgt tgaaatgttt ccaaagcgat actggtggaa
    13741 gcatttttct gagaccagca actggcacaa tgactatccc cggttttccg gatagtaaga
    13801 agtcgagcgc ttccacgcgt tgaccacgaa gttccgggct agagatactc aactcagaag
    13861 aaatcagttc atctgctgga tataaaaata gtcgatcgac atccattaaa gaaagtaaat
    13921 catcatataa tttttgcgca tggtataaat tgtgcgtaac aaatacaacc ggacgctttg
    13981 acgcaccttc taccacgctt gcaaataacg cacgtgaaga acctgtgagc cctgtgacaa
    14041 gttgtgcttt ttctttttca tccagcgcat ttaagaccgc tcgaatatct ttttgttcat
    14101 atattaattg ttgtaatcct ttcaagggaa aacagctcct ttttgtcaga aaattcattc
    14161 tatgcaacgc aagagtaaat cacgcgtccg aagaaagacc gaaatacgtg gcaaaagatt
    14221 gccacgcctc gtcatcgtct atttttgatt gtatttgttc ataacttcta taaatggtgt
    14281 ctgtgcaaag tcttcgatgg cgtcagcgct tttttgaatc gctgcgataa tatcaggttg
    14341 ttctgcttta ggaaaatctc ccaagacata atgaataact tctcctttta aaggacgact
    14401 aacgccaaca cgaatgcgat taaactcttg tgttttaacg tgttgaataa ttgatttcat
    14461 tccattatgt ccgccagcac tacctttttg gcgtaatcta atcttcccaa ctggtaaatc
    14521 gagatcatca tacacaatca cgacatcttc aattggtatg ttgtagtaat ccattagcgg
    14581 acgaatgcat tcacctgaag cgttcataaa agtgagtggt ttcactaaaa tcattttttc
    14641 accgccgacg ataatttcgc tagtcatacc attaaatttt gatttcttcc aaggggtttg
    14701 atgacgaaaa cttagttcgt caactaccat aaaaccgaca ttatgccggg tacgttcgta
    14761 ttttttgccc gggtttccga gtcctgcgat tagtttcata aaagcttctc cttacatgaa
    14821 cgaaaccact tcacgaatga actggttttt gtttcgatgt ttttttgatt ataacatgga
    14881 tttcacttgg ttgaaagttt tccaactagg cttggtgttc ggcaatttta ttttcgataa
    14941 tttgccaggc cgcttccttt tcctcttgaa aattgactgt tttccaattt tccggcgttt
    15001 ttccgacgta tttttcaaaa ccgaatttct gatataaata gatagcttga taacttccgg
    15061 tttgcgtagt taaatagaca aaactacttt tattcaagcc gagaattttg gataacaagg
    15121 ctttcgcgat accttttcca ccgtgcgaat caagcactgc aacccagtga atccgactcg
    15181 ccatctcgcc gaatgtattt ccatcccaaa gcatagccgt tccaataatt tcaccatttg
    15241 gcgcctctac aaagacgcag cgcttggcta atttttcttt ttcatttccg aattccgttt
    15301 caaaacgagc gcgaatactg tccattgaaa gcacttgacc cgtttctaat tgcaatctac
    15361 accagtcttc ttccaaacca tctttataaa agcaaaaaga atatccctca ggtaaatgaa
    15421 actccggata atttgtagca tcgtgattga ccataatagc agaaatgtgc ggtactgact
    15481 tatcaagcat ataaacgcct ccttctcgaa accattataa caaaaaaaat ggaagatatc
    15541 gcaaacaaaa gcgaatcttc catccttatt tattcaaaat tattcaacag gttcttcatc
    15601 tttaccatgt acagcttctg gttcaggtgc ttccgtagtc gttggttctt cttccgcacg
    15661 tggagcagat acagttacta ctgtttcttc ttcctccgct tgcacgacat agtctttgtt
    15721 ttccggaagg tcgttcgttg ttaaaacatc accgatttct aatgaagaaa tgtctaattc
    15781 aattgtttct ggtaattttt ctggtgttgc tgaaactttt acatcatgga taatttgttg
    15841 tagtacgccg ccagctttaa ctcccggtgc atccccaact aataccacac gaacatctgt
    15901 ctcaacttct tcattcatat caaccgctag taaatcaacg tgtactaata cgtcttttaa
    15961 cggatctact tgatattcat gtaataaaac gtttaatttc ttgccgtcca cagtaactga
    16021 aaatacggcg ttacgaccat tgtcacgaac tgctttgatt aattccaaag aatcaacgga
    16081 aactggaaca ttttccgatt tgtagccata aataattcca ggtacttttc cttcactacg
    16141 caatctcgtt acttctgaat gttgcgttgt ttctcttttc tggacctcta atgttgttgc
    16201 cataaaaaat cactccactc attcaatttt ggt
//
LOCUS       DASEAA010000051        16169 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.051, whole genome shotgun sequence.
ACCESSION   DASEAA010000051 DASEAA010000000
VERSION     DASEAA010000051.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16169)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16169)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16169
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.051"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(418..885)
                     /locus_tag="U0342_001359"
     CDS             complement(418..885)
                     /locus_tag="U0342_001359"
                     /EC_number="4.4.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-ribosylhomocysteine lyase"
                     /protein_id="HEM2422707.1"
                     /translation="MAEKMNVESFNLDHTKVKAPFVRLAGTKVGVHGDEIYKYDVRFK
                     QPNKEHMEMPALHSLEHLMAELARNHTDKLVDISPMGCQTGFYVSFINHSDYDDALEI
                     IATTLTDVLAATEVPACNEVQCGWAASHSLEGAKALAAEFLDKRDEWKNVFGE"
     gene            complement(969..3428)
                     /gene="parC"
                     /locus_tag="U0342_001360"
     CDS             complement(969..3428)
                     /gene="parC"
                     /locus_tag="U0342_001360"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit A"
                     /protein_id="HEM2422708.1"
                     /translation="MSNPEQHIQDLALEEVMGDRFGRYSKYIIQERALPDVRDGLKPV
                     QRRILFAMNVEGNTAEKGFRKSAKTVGNVIGNYHPHGDSSVYEAMVRMSQDWKVRNML
                     IEMHGNNGSVDGDPPAAMRYTEARLSPISAELLRDIEKETVDFIPNFDDTSSEPTVLP
                     ARFPNLLVNGSTGISAGYATDIPPHNLTEIIEAVIKRLDNPLSTTDDIMKIVKGPDFP
                     TGGIIQGIDGIRKAYQTGKGRVVVRSKTEIEDIRGGRKQITIHEIPYEVNKANLVKRM
                     DELRIEKKIEGISEVRDETDRTGLRIAVELKKDANAEGVLNYLFKNTDLQVSYNFNMV
                     AINKKRPELMGIIPMLDAYIEHQKEIITKRSEYDIRKARARQHILEGLIKALSILDEV
                     IKLIRGSKDKRDAKLNLQTKYDFSEKQAEAIVSLQLYRLTNTDIHELQSEAKSLAEQI
                     SVLEKILGDEAELIAVLKEELAEIKKKYKTARRTEVQAEITEIKIDTEVLVANEDVIV
                     SVTKEGYVKRTSQRSYAASNGAELAMKEADHAIFIQKMNSLDSLLLFTSKGNFIYRPV
                     HELPDIRWKNLGDHVSHLASDLSAGEEIRSAIAIQAFTEEKRFLFVTKNGMTKQSAIT
                     NYKPQRYSKSMMAIKLKGDDELLNVHLIDGTEDIFLATKNGYGLRYSITEIPESGART
                     AGVKAINLKQDDIVIGGIVLMPNEQKHILLATQRGSLKQMKASEFEPISRAKRGLLML
                     RELKSNPHRFIGITLADNNDHLFIETNTDQIVEIDVANLRITDRYSNGSFVLDETMEG
                     EPTSIWLAIPEIKDTSDAKDE"
     gene            complement(3425..5392)
                     /gene="parE"
                     /locus_tag="U0342_001361"
     CDS             complement(3425..5392)
                     /gene="parE"
                     /locus_tag="U0342_001361"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase IV subunit B"
                     /protein_id="HEM2422709.1"
                     /translation="MNRNEYNDDSIQVLEGLEAVRKRPAMYIGSTDVRGLHHLVYEIV
                     DNSVDETLAGFGKKIVVTLHVDGSVSVSDEGRGMPVGMHKTGKSTVEVILTVLHAGGK
                     FGQEGGYKTSGGLHGVGSSVVNALSEWLVVTINRDGATYQQKFKDGGKPDGTLKKIGK
                     SKATGTTIRFKPDPAIFPTTSFNYETLSERLRESAFLLKGMLIELIDERVGMAEAFHF
                     EEGVKNFVEYINEGKDVLHPVASFEGENATIEVEMAFQFNDGYSENILSFVNNVRTRG
                     AGSHESGMKAAMTRIFNDYARRVNLLKEKDKNLEGSDIREGLSAVLSIRVPEKILQFE
                     GQTKEKLGTQEARQAVDAVVAEHLAYFLAENPETSSLLVKKAVKAREAREAARKAREE
                     TRNGKKKKRSETLLSGKLTPAQSRNPNKNELYLVEGDSAGGSAKQGRDRRFQAILPLR
                     GKVINTEKAKLQDILKNEEISTIIHTVGAGVGTEFDVEDCNYDKVVIMTDADTDGAHI
                     QVLLLTFFYRYMRPLVEAGKVFIALPPLYKVSRGSGKKEVIEYAWTDEELDSAIQKIG
                     KGYMIQRYKGLGEMNADQLWETTMNPDTRTLIRVRVDDSARAERRVATLMGDKVEPRR
                     QWIEKHVEFSMEDSQNILENENMMVEEAKDI"
     gene            complement(5573..5980)
                     /locus_tag="U0342_001362"
     CDS             complement(5573..5980)
                     /locus_tag="U0342_001362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-binding protein"
                     /protein_id="HEM2422710.1"
                     /translation="MQNPTKEEIQQILKKAKVIAVIGLSDKPDRTSYRVSQIMQQAGY
                     KIIPVNPNADEILGEKAVKRLTDIKEHVDIVNVFRRSEFLPEIAEAFDQIDADVFWAQ
                     LGIANQEAFDFLTEKGYPTVMDYCIKVAYQEMD"
     gene            6138..6734
                     /gene="plsY"
                     /locus_tag="U0342_001363"
     CDS             6138..6734
                     /gene="plsY"
                     /locus_tag="U0342_001363"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate 1-O-acyltransferase PlsY"
                     /protein_id="HEM2422711.1"
                     /translation="MTINLILLSLLAYVIGSIPSGLWIGKIFYKKDIRDFGSGNLGAT
                     NSFRVLGIKAGSIVTVMDILKGTVATLLPFFFQLNVDHHFWLLTGAFAIIGHSFPLFA
                     GFRGGKAVATSAGVILAYAPLLFVAALVVFLVTLKLSKYVSLSSMIGALAALIISLFM
                     GDWILIILVACIALFVIWRHRANITRIRNGEEPKIKWM"
     gene            complement(6776..7648)
                     /locus_tag="U0342_001364"
     CDS             complement(6776..7648)
                     /locus_tag="U0342_001364"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldose 1-epimerase family protein"
                     /protein_id="HEM2422712.1"
                     /translation="MIKLENEVLLVEMKTAGAELTRIFHKDTGLEYLWNADSKFWGRH
                     SPVLFPTVGRLVEDTYLVDGKPYHLGQHGFARDRDFQVIEQTEKSVRFELDADEDSLA
                     VYPYKFKLSIIYTIEKNTVAVSYEVENTDNKRIYFSIGAHPAFNLPLTDGTTFEDYYL
                     DFGTEENLETLCLEGPYRSGEIKKVVDKPAQYLPLSYDLFKNDALIFEALKQKEMTIK
                     SDKTPHFVKVSFPEFPFVGVWTAKPGTPFLCIEPWYGIADGAGESVELRDKAGIEHLE
                     PEAVFASEYEITVG"
     gene            complement(7651..7962)
                     /locus_tag="U0342_001365"
     CDS             complement(7651..7962)
                     /locus_tag="U0342_001365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422713.1"
                     /translation="MAFGVKRDEMELWKEKAARGEIAIITHYWLDDRFPESKTVTKVA
                     CVDLKKLQQWGKQYGLAPDWIDNRRKNFPHYDLFGEMQLVVLKKEKAFEQIERFHLEE
                     K"
     gene            complement(7985..8404)
                     /locus_tag="U0342_001366"
     CDS             complement(7985..8404)
                     /locus_tag="U0342_001366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEM2422714.1"
                     /translation="MEIAETTIEVRYAETDQMGVVYHNNYLVWMEIGRTRLIEKLGFR
                     YFDMEEAGYLSPVLDVHIHYVKPLRYGQKAVVKTWIKGYDGLRVTYGYEICYEDTNEV
                     AITGETQHVCVTKEDFRPVSLRRTFPNWHEAYLKALE"
     gene            complement(8508..9287)
                     /gene="codY"
                     /locus_tag="U0342_001367"
     CDS             complement(8508..9287)
                     /gene="codY"
                     /locus_tag="U0342_001367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP-sensing pleiotropic transcriptional
                     regulator CodY"
                     /protein_id="HEM2422715.1"
                     /translation="MTLLEKTRKINAMLQNAAGKTVNFKEMADTLTDVIEANTYIVSR
                     KGKLLGYSEALPIENDRMKQMLTERQFPEEYTQSLFNVGETSSNLEVSSQYTAFPIEN
                     SELFTKGLTTIVPIVGGGERLGTLILSRLESNFTDDDLLLAEYGGTVVGMEILHEKAE
                     EIEEEARSRAVVQMAISSLSYSELEAIEHIFDELNGKEGLLVASKIADRVGITRSVIV
                     NALRKLESAGVIDSRSLGMKGTFIRVLNDKFLVELEKLKNN"
     gene            complement(9308..10717)
                     /gene="hslU"
                     /locus_tag="U0342_001368"
     CDS             complement(9308..10717)
                     /gene="hslU"
                     /locus_tag="U0342_001368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATPase subunit HslU"
                     /protein_id="HEM2422716.1"
                     /translation="MTNITLMNQLTPKQIVEKLDQYIIGQTGAKKSVAVALRNRYRRQ
                     LMDESIRDEIIPKNILMIGPTGVGKTEIARRIAKIVRAPFSKVEATKFTEVGYVGRDV
                     ESMVRDLVEVSVRLVKEEKMQLVRVKAEKNAEKRLIKLLAPSQKKKQTTSQNPLEALF
                     GGMNQPDESPEEEVDQELKNKRSQIEWRLQNGELDDEIVTVEVKEQQNPMLDMMRGAG
                     MDQMNGMQDALSGMFPAKKKKRKVTVREAKKILFEDEASKLIDADELAAEGIHRAEQM
                     GMIFIDEIDKIASKEGGGNAQVSREGVQRDILPIVEGSQISTKYGTVNTEYILFIAAG
                     AFHMSKPSDLIPELQGRFPIRIELDKLTQEDFYKILTEPDNALIKQYKALLKTEGIDL
                     IFTKEAVERIAEIAFQVNQDSDNIGARRLHTILEKLLEDLLFEAPEINMESIKVTENY
                     VNEKLAPIMQNKDLTQFIL"
     gene            complement(10731..11270)
                     /gene="hslV"
                     /locus_tag="U0342_001369"
     CDS             complement(10731..11270)
                     /gene="hslV"
                     /locus_tag="U0342_001369"
                     /EC_number="3.4.25.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease subunit HslV"
                     /protein_id="HEM2422717.1"
                     /translation="MELHATTIFAVQHDGKAAMAGDGQVTLGESVVMKHTAKKVRRLF
                     HDKVIAGFAGSVADAFTLFEKFEAKLNEYNGNLERASVELAQQWRSDSVLRKLEAMLI
                     VMDKDTLLLVSGTGEVIEPDDGILAIGSGGNYALAAGRALKRHNGGQMEAKDIARHAL
                     EIASEICVFTNDHITVEEL"
     gene            complement(11291..12193)
                     /gene="xerC"
                     /locus_tag="U0342_001370"
     CDS             complement(11291..12193)
                     /gene="xerC"
                     /locus_tag="U0342_001370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tyrosine recombinase XerC"
                     /protein_id="HEM2422718.1"
                     /translation="MIQEGKLEQQFFDYLHSERNYSVNTSTAYENDLLDFRRFLNEQS
                     ITTYQQVTFLDVRIYLTELKQKSFSRTTVARKISSLRSFYTFLLRENVINENPFTYVS
                     HAKNQLRLPKFFYSEEMEALFQVVYEDNETLTLRDRVLLEVLYGTGIRVSECAGILLP
                     DLDTSYQAILIRGKGNKERYVPFGVYAEDAITDYLPERANLMSRYKKSHDALLVNHYG
                     DPLTTRGIRYCLSKIISKASLTRKIHPHMLRHTFATDLLNNGADMRTVQELLGHASLS
                     STQIYTHVTKEHLKSTYMKHHPRA"
     gene            complement(12476..13780)
                     /gene="trmFO"
                     /locus_tag="U0342_001371"
     CDS             complement(12476..13780)
                     /gene="trmFO"
                     /locus_tag="U0342_001371"
                     /EC_number="2.1.1.74"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464801.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FADH(2)-oxidizing
                     methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))-
                     methyltransferase TrmFO"
                     /protein_id="HEM2422719.1"
                     /translation="MEKSVNVIGAGLAGSEAAWQLVKRGVKVDLYEMRPVKQTPAHHT
                     DKFAELVCTNSLRANGLTNAVGVIKEEMRILDSIIIEAADKASVPAGGALAVDRHEFS
                     GYITDKVKNHPLVTVHTEEVTTIPEGPTIIATGPLTSPALADEIKQLTGEEYLYFYDA
                     AAPIIEKDSIDMDKVYLKSRYDKGEAAYLNCPMSEEEFNAFYEALVTAETAALKEFEK
                     EVFFEGCMPIEVMAKRGIKTMLFGPLKPVGLEDPKTGKRPYAVLQLRQDDAAGTLYNM
                     VGFQTHLKWGEQKRVFGMIPGLENAEIVRYGVMHRNTFINSPTVLEPTYQLKTRNDLF
                     FAGQMTGVEGYVESAASGLAAGINAANFVEEKELVVFPAETAIGSLAHYITSASKKSF
                     QPMNVNFGLFPELETKIRAKQERNEKLAERALNAIKRVAEQL"
     gene            complement(13843..15921)
                     /gene="topA"
                     /locus_tag="U0342_001372"
     CDS             complement(13843..15921)
                     /gene="topA"
                     /locus_tag="U0342_001372"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I DNA topoisomerase"
                     /protein_id="HEM2422720.1"
                     /translation="MADYLVIVESPAKAKTIEKYLGKKFKVKASMGHVRDLPKSQMGV
                     DTEHDYEPRYITIRGKGPVLKELKQAAKKAKKVYLAADPDREGEAIAWHLANSLELDQ
                     SDKLRVVFNEITKEAVKESFKTPRKIDMDLVNAQQARRILDRLVGYNISPILWKKVKK
                     GLSAGRVQSIALRIIIDREKEINNFKPEEYWTIDGNFLKGKKKFQANFYGVNGKKKKL
                     STADDVKEVMSAIKGKSFDVTDVTKKERLRNPAAPFTTSSLQQEAARKLNYRTRKTMM
                     LAQQLYEGITLGKQGTVGLITYMRTDSTRIADSAILEASNYIKETYGPEFSRNHKRSD
                     KNAKGAQDAHEAIRPTSAMRSPQEVKEFLTRDQLRLYRLIWERFIASQMTPAVLDTMR
                     VDLDNNGVNFRANGSKIKFHGFMKVYVESNDDNTEEKENILPDLKKGDKVQSESLEQR
                     QHFTQPPPRYTEARLVKTLEEIGIGRPSTYSPTLDTIQRRNYVSLTNKRFIPTELGEI
                     VNEMIEEYFPEILDVKFTANMESELDEVEHGEVEWVKVIDEFYKRFEPNVIKADAEME
                     KIEIKDEPAGIDCDLCGAPMVYKMGKYGKFLACSRFPDCRNTKAIVKEIGVTCPKCEK
                     GHVIERKSKKKRIFYGCDRYPDCDYVSWDKPVERACPKCEKRALVEKKLKKGVQVQCT
                     NCDYKESTQQ"
BASE COUNT         4339 a         3423 c         2721 g         5686 t
ORIGIN      
        1 taaactagta aaaaaaaggg ctatttttgt cgaatttttg tcgaaatgaa atcataatat
       61 ttttataagc tattttatag ataaaaaact atccactcga gaattttgag tagatagttt
      121 tttatttatt tttacgaata attataataa ctatgaatcc taccactgcg atagttgttg
      181 gtactaattt ttctgtttgc gttgatttga ctatactagt tttcaaaaca gagatggctg
      241 tatctccaga acattagaat cagatagact gatctgggca aatcacaaaa aatacaagtg
      301 attgcatggc aagtctccgt tagtattcca tacgacattt aaattcgtta ttaattttga
      361 taaaaatatg ttatttataa aaagcatcta ccgatattcc gatagatgct ttcattttta
      421 ttcaccaaat acatttttcc attcgtctcg tttgtctaaa aattctgctg caagcgcttt
      481 tgcaccttct aaactatggc ttgctgccca accgcattgg acttcattgc atgcaggaac
      541 ttctgtcgca gctaaaacat ccgttagtgt tgtggcgatg atttctagtg catcatcata
      601 gtcgctatga ttaatgaagg aaacataaaa gccagtttgg catcccattg gactaatgtc
      661 tactaatttg tcagtatgat ttcttgcaag ttctgccatc aaatgttcta aagagtgtag
      721 cgctggcatt tccatatgtt ctttattggg ttgtttgaag cgaacatcat atttgtatat
      781 ttcatctcca tggacgccca ctttcgttcc cgccagtctc acaaaaggtg cttttacttt
      841 cgtatggtcc aaattaaaac tttctacatt cattttttct gccatgcgta tccctcctct
      901 tattctttgt tattatatca aaaaaaaaga atccttgcat atttctatac aagaactctt
      961 tttcttcctt attcatcttt tgcatctgag gtatctttta tttcgggtat tgctagccaa
     1021 atagaagttg gttcgccttc cattgtttca tcgagtacga aggatccgtt agaatagcga
     1081 tccgttattc gtagattggc aacgtctatt tcaacaattt ggtctgtgtt tgtttcgata
     1141 aataggtggt cgttattatc agcaagagtt ataccaatga agcgatgtgg attgcttttc
     1201 agttcgcgta acatcaataa gccacgtttc gctcttgaga ttggttcaaa ttcgcttgct
     1261 ttcatttgtt tgagtgagcc acgttgtgtg gcaagaagaa tatgtttttg ttcgttcggc
     1321 ataaggacta taccgccaat aactatatca tcttgtttta agttaatcgc ttttacaccc
     1381 gctgttcttg cacctgattc tggaatttca gtaatagaat aacgaaggcc gtaaccattt
     1441 tttgttgcta agaaaatatc ttctgtgcca tcaatcaaat gaacatttaa cagctcatcg
     1501 tcacctttta atttaattgc catcatggat ttagaatagc gttgtggttt gtaattcgta
     1561 atagctgatt gcttggtcat gccgttttta gtaacgaata aaaagcgttt ttcttccgta
     1621 aaggcttgaa ttgcaatagc agaacggatt tcttcacctg ccgataaatc actggccaag
     1681 tgacttacgt gatctccgag gtttttccag cgaatatctg gcaactcatg tactggtcga
     1741 taaatgaaat tccctttgct cgtgaataac aggagcgaat caagtgaatt cattttttgg
     1801 ataaagatgg catggtctgc ttctttcatg gctagttccg caccgtttga tgctgcataa
     1861 gaacgttggc tcgtacgttt cacatagcct tcttttgtca cagaaacaat cacatcttca
     1921 ttcgcaacaa gtacttctgt atcgattttg atttctgtaa tttctgcttg cacttctgta
     1981 cggcgagcag ttttatattt tttcttaatt tccgctagct cttcttttaa cacagcgata
     2041 agctctgctt catcacctag gattttttca agaacactaa tttgttctgc taaggatttt
     2101 gcttcacttt gaagttcatg tatatctgta tttgttaaac gataaagttg taaagataca
     2161 attgcttctg cttgtttttc gctgaaatca tattttgttt gaagatttag ttttgcatcg
     2221 cgtttgtctt ttgaaccacg aattaattta atgacttcat ctaaaataga caaagcttta
     2281 attaaacctt ctaaaatatg ttggcgagcg cgcgctttac gaatatcgta ttcagagcgc
     2341 ttcgtaataa tttctttttg gtgttcaata taagcgtcaa gcattgggat aatgcccatt
     2401 agctccggac gttttttatt aatagcaacc atgttaaaat tatagcttac ttgtaaatct
     2461 gtatttttaa acaggtagtt caaaacacct tcagcattgg catctttttt tagttcaaca
     2521 gcaatacgaa gtcctgtgcg gtcggtttca tcacgtactt ctgaaatacc ttcaattttt
     2581 ttctcaattc gaagttcatc catgcgttta actaaattag ctttatttac ttcatatgga
     2641 atttcatgaa ttgtaatttg ttttctaccg ccacgaatat cttcaatttc tgttttagaa
     2701 cgaacgacaa cgcgtccttt tccagtttga taagcttttc gaataccatc aatcccttga
     2761 ataatcccac ctgttgggaa atctggacct ttgacaattt tcataatatc atccgttgtg
     2821 gaaagtgggt tatctaatcg tttaataaca gcttcgatga tctctgttaa attatgcggc
     2881 ggaatatctg ttgcataacc agcggagata ccggtagaac cattcactaa aaggtttgga
     2941 aaacgtgctg gtaaaacagt tggctcacta gatgtgtcat caaagttagg aataaagtca
     3001 actgtttcct tttcaatatc gcgtaaaagt tctgctgata taggagaaag gcgagcttct
     3061 gtataacgca ttgctgcagg cggatccccg tcgacactac cgttattacc atgcatttca
     3121 atcagcatat tacgtacttt ccagtcttga ctcatccgta ccattgcttc gtaaactgaa
     3181 gagtcaccat gtggatggta gttaccaata acgtttccga ccgttttagc agatttacgg
     3241 aaacctttct cagcagtatt tccttcgaca ttcatcgcga ataaaatacg acgttgtaca
     3301 ggtttcagtc cgtcacgaac atctggaagc gcacgttctt gaataatata tttactatat
     3361 ctaccaaaac ggtcgcccat aacttcttct agcgctaagt cttggatatg ttgttctgga
     3421 ttactcaaat gtctttcgcc tcctcaacca tcatgttttc attttctaaa atattttggc
     3481 tatcttccat agaaaactcg acatgctttt caatccattg tcgtcttggt tctactttgt
     3541 cgcccatcag tgtggccacg cggcgttcag cgcgtgcaga atcatctacc cgtacacgaa
     3601 ttaacgtgcg cgtatcagga ttcatcgttg tttcccaaag ttggtcagca ttcatctcac
     3661 caagaccttt gtatcgttga atcatgtagc ctttaccaat tttttggatg gcagagtcta
     3721 attcttcatc tgtccaagca tattcgatta cttctttttt accagaacca cggcttactt
     3781 tgtaaagtgg tggtaaggca ataaatactt tacctgcttc cactagtggg cgcatataac
     3841 gatagaaaaa ggttaatagt aatacttgaa tgtgtgcgcc atcggtatcg gcatcggtca
     3901 tgataactac tttgtcatag ttacaatctt ctacatcgaa ctccgtacca actcccgcac
     3961 caactgtatg gataatcgta ctaatttctt catttttcaa gatatcttgt agtttggctt
     4021 tttctgtatt gattactttt cctcgaagtg gcaaaattgc ttggaaacga cggtcacgac
     4081 cttgtttagc tgatcccccc gccgagtcac cttcgactag gtaaagttca tttttattag
     4141 gatttcgcga ttgtgccggt gttaattttc cagaaagaag tgtttcggaa cgtttctttt
     4201 tcttgccgtt acgtgtttct tcgcgcgctt ttctggcagc ttctcttgct tcgcgggctt
     4261 taacagcctt tttaactaga agagagcttg tttctgggtt ttcggcaagg aagtaagcta
     4321 aatgttctgc tacaactgca tcaaccgcct gacgagcttc ctgcgtccct agtttttctt
     4381 tcgtttgacc ttcgaattga aggatttttt ctggaacacg gatagaaagt acagctgata
     4441 aaccttcacg aatatcgcta ccttcaaggt ttttatcttt ttcttttaaa agattcacac
     4501 gacgagcata atcattgaaa atccgcgtca ttgccgcttt cattccagat tcatgcgagc
     4561 ctgctccgcg agttcgaacg ttattaacga aactcaagat attttcagaa taaccatcat
     4621 tgaattggaa cgccatttct acttcaatgg tcgcattttc cccttcaaag ctagctacag
     4681 gatgaagcac atctttacct tcattaatat attcaacaaa gtttttcaca ccttcttcaa
     4741 agtggaaagc ctctgccatg ccaactcgtt catcaattaa ttcaattaac atccctttta
     4801 aaagaaatgc tgattctctt agacgttctg ataaggtttc atagttaaat gaagtcgttg
     4861 gaaaaattgc tggatctggc ttaaagcgaa tcgttgtccc agtagctttt gattttccga
     4921 tttttttcag tgttccatct ggctttccgc cgtctttaaa tttttgttgg taggttgcgc
     4981 cgtcacgatt aattgtaact actaaccatt cagagagcgc atttacaacg gatgaaccaa
     5041 caccgtgaag cccaccactt gttttatatc cgccttcttg gccgaactta ccaccggcgt
     5101 gaagaacagt taaaataact tctaccgtag acttacctgt tttgtgcatc ccaacaggca
     5161 tcccacgacc ttcatcgcta acactaacac tgccatccac gtgaagtgtc acaacaattt
     5221 tcttaccaaa acctgcaagg gtctcatcga ccgagttgtc cactatttca tatactaaat
     5281 ggtgcagccc gcgtacatct gttgaaccga tatacatcgc tgggcgtttc cggaccgctt
     5341 ccagtccttc aagcacctga atagaatcat cattatactc attccgattc atatttcaaa
     5401 actcccttca ttccgtcaat ctacaacttt cacgttgtta ttcgcttaaa accactttat
     5461 cagaatagca ttaactagct gattaataaa gtgatagttt agtgacaaat tccttttcat
     5521 aaaaaaacag gctctgctat aagaacctgc ttccttcaaa aatggtgttt aattaatcca
     5581 tttcttgata agcaacctta atgcaataat ccatgacagt aggatatcct ttttctgtca
     5641 aaaaatcaaa tgcttcctga ttagctatgc caagctgtgc ccaaaataca tctgcatcta
     5701 tttggtcaaa agcctccgct atttcaggta aaaactctga gcgacgaaag acattcacaa
     5761 tatccacatg ttccttgata tccgttaaac gcttgacggc tttttcgcca agaatttcgt
     5821 ctgcattagg gttcactggt ataattttgt acccagcttg ctgcattatt tgactcactc
     5881 ggtaacttgt gcggtctggt ttatcactca aaccaatgac tgcgattact tttgccttct
     5941 ttaagatttg ctggatttct tcttttgttg gattttgcat tagtctaatc gccccctact
     6001 attctttcta atcataagct atttttgcgg ttttttcaac ttttcatcgt gatttgtcct
     6061 aacaatttag ccaatcttct tcattttgtg ctataattct ttatggaaaa catcatttct
     6121 tcttgagggg tttaaaaatg acaattaatt taattctgct ttctttatta gcctatgtga
     6181 ttggttcgat accgtctggt ttatggattg gcaaaatttt ttacaaaaag gatattcgcg
     6241 atttcggtag tggtaattta ggcgcgacga attcattccg ggttctcgga atcaaagccg
     6301 gtagtatcgt gacagtgatg gacattttaa aagggactgt cgcaacgttg cttccatttt
     6361 tctttcaatt gaatgtagac catcattttt ggttgctaac tggagcattt gctattattg
     6421 ggcatagttt cccgcttttc gcaggattta gaggcggaaa agcagttgct acttcggcag
     6481 gtgtcatcct tgcctatgca ccattactct ttgtagccgc acttgtagtc ttcttagtta
     6541 cacttaaact tagcaaatat gtatcgctca gctcgatgat tggagcactt gcagcgttaa
     6601 ttatttctct tttcatggga gactggattt taattattct tgttgcttgt atcgcactct
     6661 ttgtcatctg gcgtcaccga gcaaatatca ctcggattcg taacggcgaa gaacccaaaa
     6721 taaaatggat gtaataaaac ccagaagatg catttcgctc ttctgggttt tcgttttaac
     6781 ctactgtaat ttcatattcg gaagcaaaga cagcttctgg ctctaaatgc tctattcccg
     6841 ctttatctcg cagttcaaca gattctccag caccatctgc aattccgtac cacggttcaa
     6901 tacataagaa aggggtcccc ggttttgccg tccaaacacc tacaaatggg aattctggga
     6961 aagatacttt tacaaaatga ggtgttttat ctgatttgat ggtcatttct ttttgtttta
     7021 gtgcttcaaa aataagtgca tcgtttttaa ataaatcata gctcagtggt aagtattgtg
     7081 ctggtttatc gacaaccttc ttaatttcgc cactgcggta tggcccttct aaacaaagtg
     7141 tttctaaatt ctcttctgtt ccgaaatcca aataataatc ttcaaatgtc gtcccgtctg
     7201 ttaatggtaa attaaaagct gggtgcgcac caatagagaa ataaattcgc ttgttatccg
     7261 tattttcaac ttcgtaggaa acagctaccg tatttttttc tattgtataa ataatcgata
     7321 gtttaaattt gtagggataa actgctaatg aatcttcgtc tgcatccaac tcaaaacgta
     7381 ccgatttttc tgtttgctcg attacttgaa aatcacggtc acgggcaaac ccgtgttgcc
     7441 ctaagtggta cggctttcca tcgactaagt aagtatcttc tacaagcctt ccaactgttg
     7501 gaaatagaac aggtgaatga cgcccccaaa acttgctatc agcattccat aaatactcaa
     7561 gtccggtatc tttatggaag attcgcgtta attctgctcc agctgttttc atttctacaa
     7621 gcaatacttc attttccagt ttaatcattg ttatttctcc tccaaatgaa accgctcgat
     7681 ttgttcaaag gctttttctt ttttcagtac aacgagttgc atctcgccaa acaaatcata
     7741 atgcggaaag ttttttcgac ggttatcaat ccaatctggg gctaaaccat attgtttccc
     7801 ccattgttgt agttttttca aatctacaca tgcaactttg gttacagttt ttgattcagg
     7861 aaaacgatca tctagccaat aatgggtgat aattgcaatc tctccacggg ctgctttttc
     7921 tttccataac tccatttcat cacgttttac accaaaagcc attttttatc actaccagtc
     7981 ttatttattc taaagctttt agataggctt catgccaatt cggaaatgtt cttcttaacg
     8041 atacagggcg gaaatcttct ttcgttacac atacatgctg tgtttctcct gtaatggcta
     8101 cttcattcgt atcttcatag caaatttcat aaccataagt aacacgaagt ccatcatacc
     8161 cttttatcca tgtttttaca actgccttct gtccgtaacg cagtggtttt acgtaatgaa
     8221 tatgcacatc taataccgga gaaagataac cagcctcttc catatcaaaa taacgaaaac
     8281 ctaatttttc aattaatctt gttcggccga tttccatcca tacaaggtaa ttgttatgat
     8341 aaacaacgcc catttgatcg gtttctgcat agcgtacttc aatggttgtt tcagcgattt
     8401 ccattctaaa ttcctccagt cacacaagtt ctactttctt attttaccaa agcaaaccaa
     8461 aaaaagctct ccccgaatat tttcagagaa agcttttcta ctttttttta gttgtttttc
     8521 aatttttcta gttctacaag gaatttatca ttaagtacac ggataaatgt acctttcatt
     8581 cctagtgagc gagaatcaat aacgcctgca ctttctaatt tacgaagtgc atttacgatt
     8641 acagaacgtg taatgccgac acggtccgcg attttagagg caacaagaag accttcttta
     8701 ccattcaact catcgaaaat atgctcaata gcttctaact cactgtaaga aagagagcta
     8761 atcgccattt gcacaacggc acggctacga gcttcttctt caatttcttc tgctttttca
     8821 tgcaagattt ccattccaac aactgttcca ccatattccg ctaaaagtaa atcatcatca
     8881 gtgaaattgc tttctaagcg agataggata agtgttccaa gacgctcacc accacctacg
     8941 ataggtacga tagttgttaa accttttgtg aataattcac tgttttcgat tggaaaagca
     9001 gtatattggc ttgatacttc taagttagaa gaagtttcgc ctacattgaa aaggctttgc
     9061 gtatattctt ctggaaattg gcgttctgtt agcatttgtt tcatacgatc attttcgatt
     9121 ggaagtgctt cagaatagcc aagtaattta cctttacggc ttacgatata tgtgtttgct
     9181 tcaatgacat ctgtaagtgt atctgccatt tctttgaagt ttactgtttt tcctgcagca
     9241 ttttgtaaca tagcattaat ttttcttgtt ttttctaata aagtcattat tagatcctcc
     9301 tagtatttta taaaataaat tgtgttaaat ctttattctg cataattggt gcaagttttt
     9361 cattaacata gttttctgtt actttaatag attccatatt gatttctggt gcttcaaata
     9421 gtaaatcttc tagtaatttt tctaaaatgg tatgaagtct tcttgctccg atattatctg
     9481 aatcttgatt aacttggaat gcaatctcgg caattctttc tacggcttct ttggtgaaaa
     9541 tcaagtcaat tccttctgtt ttcagtaaag ctttgtattg tttaattagt gcattgtctg
     9601 gttctgttaa gattttgtag aaatcttctt gagttaattt atccagctca attctaattg
     9661 ggaaccggcc ttgaagctct ggaattaaat cgcttggttt agacatatgg aaagcccctg
     9721 ctgcgataaa taaaatgtac tccgtgttga ctgtaccata tttagtagaa atttgcgacc
     9781 cctccacgat tggaagaatg tctctttgga cgccttcccg cgaaacttgt gcatttccgc
     9841 cgccttcttt actagcaatt ttatcaattt catcgataaa aatcataccc atttgttccg
     9901 cacgatgaat gccctctgct gcaagttcat ctgcatcaat taattttgat gcttcatctt
     9961 caaaaagaat tttcttcgct tcacgtacgg ttactttgcg ttttttcttt ttcgctggga
    10021 acatgcccga aagcgcatcc tgcataccat tcatttggtc cattccagcg ccgcgcatca
    10081 tatcaagcat tggattttgc tgttctttta cttctactgt tactatttca tcatcaagct
    10141 cgccgttttg tagacgccat tcaatttggc tacgtttatt ctttaattct tgatctactt
    10201 cttcctcagg agattcatct ggttgattca tgccgccgaa aagcgcttct aacggatttt
    10261 gcgatgttgt ttgttttttc ttttggcttg gcgctaaaag tttaatcaga cgtttctctg
    10321 catttttttc tgctttaaca cgaactaatt gcattttttc ttcttttact aaacgaacag
    10381 atacctccac taagtcacga accattgatt ctacatcgcg accgacatag ccaacttccg
    10441 tgaatttagt agcctctact ttggaaaaag gagcacgaac aattttggca attcgacgtg
    10501 ctatttctgt tttaccaaca cctgttggtc caatcatcag aatgtttttc ggaataattt
    10561 catcacggat tgattcatcc attagttgtc tacggtaacg atttcttagt gctactgcaa
    10621 ctgatttctt cgctccggtt tgtccaataa tatattgatc cagtttttca acaatttgct
    10681 ttggtgtcaa ctggttcatt aacgttatat ttgtcaaatt aaccactcct tcaaagctct
    10741 tctactgtaa tatgatcatt tgtaaacaca caaatttcag aagcgatttc tagcgcatga
    10801 cgagcgatat cctttgcttc catttgacca ccattatgtc ttttaagtgc tcgcccagcg
    10861 gctagcgcat aattacctcc agaaccgata gctaaaatac catcgtctgg ttcaataact
    10921 tctcctgtcc ctgaaactaa aagtagtgta tctttgtcca tcacgattag catagcttct
    10981 aattttctta aaacactgtc actgcgccat tgttgagcaa gttcgactga tgctctttct
    11041 aagttaccat tatattcatt caatttcgct tcaaattttt caaataaagt aaaagcatct
    11101 gcgactgaac ctgcaaatcc agcaattact ttatcatgaa aaagacggcg aacttttttg
    11161 gcggtatgtt tcattacgac cgattcacca agcgtcactt gaccgtctcc agccatcgct
    11221 gcttttccgt catgttgaac cgcaaatatc gttgtagcgt gcaattccat ttctttaacc
    11281 tcctccaaat ttaagcccta ggatgatgtt tcatataagt agactttaaa tgctcttttg
    11341 tcacgtgcgt atagatctgg gtggatgata agctagcgtg cccaagtaac tcttgtaccg
    11401 tccgcatatc cgccccgtta ttaagtaagt ctgttgcaaa tgtgtggcgt aacatatgcg
    11461 gatgaatttt ccgagttaat gaagctttac taattatttt cgacaagcaa tacctaatgc
    11521 ccctggtcgt caaaggatca ccgtaatgat tcacaagtaa agcatcatgt gactttttat
    11581 agcgagacat aagattggca cgttctggca aataatctgt aatcgcatct tctgcataca
    11641 ccccgaatgg cacatatcgt tctttattcc cttttccgcg tatgaggatg gcttgataag
    11701 atgtatctaa gtcaggcaac agtattccag cacattcact cacccgaatt cccgtaccat
    11761 ataacacctc taaaagcact ctatctcgca atgtaagcgt ttcattatct tcatagacca
    11821 cttgaaacaa agcttccatt tcttctgaat agaaaaattt gggaagcctt aactgatttt
    11881 tcgcatgtga tacgtaagta aacggatttt cgttaataac attctctctt aaaagaaaag
    11941 tgtaaaaact ccgtaaactt gaaatttttc tagctacggt tgtacgagaa aaagattttt
    12001 gctttaattc cgtcaaataa atacgcacat ctagaaaagt aacttgctga tatgtggtaa
    12061 tagattgttc atttaaaaag cggcgaaaat caagtaaatc attttcataa gctgtactag
    12121 tgttcactga ataattacgt tctgagtgaa gatagtcaaa gaactgttgc tctaacttcc
    12181 cctcttgtat catacgtata cacctctcaa acactatcat gttaacatat caatatccac
    12241 gttgcaataa ttttatacat ttttcgcaac tttttgaatt aatctgcatt tacaatcaat
    12301 ttaaataaaa cacttaactt ttgtgaaaaa accaacattt attaacaaaa tctgtctaga
    12361 ccatttatcg gaaagaaaaa ctgtctttcc accactatca actctcttga aataccaaag
    12421 tagccatcgt gatgaaaaga acagcaaaga atagtcctca attattatag tgtttttata
    12481 gttgttctgc aacccttttt attgcattta gcgctctttc agctaatttt tcattacgtt
    12541 cttgttttgc acgaattttt gtttcaagct ctgggaagag tccaaaatta acattcattg
    12601 gttggaacga ttttttacta gcactcgtaa tgtaatgggc tagactacca atcgccgttt
    12661 ctgccgggaa aaccactagt tctttttcct ctacaaaatt ggccgcatta atccccgccg
    12721 caagtccact agccgcggat tcaacatatc cctctacacc tgtcatttgt ccagcaaaga
    12781 acaaatcatt gcgtgttttc agttggtaag ttggttcaag cacagttggc gagttaataa
    12841 atgtgttacg atgcattaca ccataacgta cgatttcagc attttcaagt cctggaatca
    12901 ttccgaaaac acgtttttgc tcaccccatt taaggtgcgt ttggaaacct accatgttgt
    12961 aaagtgttcc cgctgcgtca tcttgtctaa gttgcaacac agcataaggt cttttcccag
    13021 tttttggatc ttccaaacca acgggcttta atggaccaaa taacatcgtt ttaattccgc
    13081 gttttgccat tacttcgatt ggcatacatc cttcgaaaaa cacttctttt tcaaattctt
    13141 ttaaagcagc cgtttctgcc gttactaatg cttcataaaa agcattgaat tcttcttctg
    13201 acatcgggca gtttaagtaa gcagcttctc ctttatcata gcgggatttc aaataaactt
    13261 tatccatatc aatgctatct ttttcaatta ttggtgctgc tgcatcataa aagtaaagat
    13321 actcttcccc tgttaattgt ttaatttcat cagcaagcgc aggacttgta agtggaccgg
    13381 tcgcaataat tgttggacct tctggaatag tagttacttc ttccgtatgc actgttacga
    13441 gtggatgatt tttcaccttg tctgtaatat aaccagaaaa ttcatgtcga tcaaccgcaa
    13501 gtgcccctcc agctggtaca gatgctttgt cagcggcttc aatgataata gaatcaagta
    13561 tccgcatttc ttctttaata actcctacag cattcgttag accgttagct cgcaaggaat
    13621 tcgtacatac tagctctgca aatttatctg tatgatgtgc cggagtttgt tttaccggtc
    13681 tcatttcgta taaatccacc tttaccccac gttttactaa ctgccatgct gcttcacttc
    13741 ctgctaaacc tgctccaatt acattaacac tcttttccat ttgtccgcct cctcgcgcaa
    13801 caatggcaac acaagaacga tccaagtgtt gccattttcc gattattgtt gggttgattc
    13861 tttgtaatca caatttgtac attgtacttg tacacctttt ttcaatttct tctcgactaa
    13921 tgctcgtttc tcacatttcg gacaagcccg ttcgaccggt ttatcccatg atacatagtc
    13981 acaatctgga taacgatcac aaccgtaaaa aatacgcttt ttcttacttt ttctttctat
    14041 tacatgtcct ttctcacatt tcggacacgt aacgccgatt tctttcacga ttgctttcgt
    14101 attacgacaa tcaggaaatc tgctacaagc taggaactta ccgtatttac ccattttgta
    14161 aaccattgga gctccacaaa gatcacagtc aattccggct ggttcatctt taatctcgat
    14221 tttttccatt tctgcatctg cttttataac atttggttca aatcgtttat aaaattcatc
    14281 aatgactttc acccattcga cttctccgtg ctctacttca tcgagctcac tttccatgtt
    14341 ggcagtgaat ttgacatcta aaatttctgg gaaatattct tcaatcattt cattaacgat
    14401 ttcacctaat tcagttggaa taaagcgttt attcgttaaa gaaacataat ttctgcgctg
    14461 aattgtgtcg agtgtcggcg aataagttga tggtcgacca ataccaattt cttcgagcgt
    14521 ttttactaat ctagcttctg tgtaacgtgg aggtggctgt gtgaaatgtt gccgttgttc
    14581 gagtgattcg gactgtacct tatctccttt tttcaaatct ggtaagatat tttctttttc
    14641 ttccgtatta tcatcgttac tttctacata gactttcatg aagccgtgaa atttaatttt
    14701 agatccattt gctctgaagt tcacgccatt gttgtctaag tcaacgcgca ttgtatcaag
    14761 aactgctggc gtcatttggc tcgcgataaa tctttcccaa atcaaacgat ataagcgaag
    14821 ttggtcccgt gttaaaaatt cttttacttc ttgaggactt ctcattgcac ttgtaggtct
    14881 gattgcttca tgggcatctt gagcaccttt agcattttta tctgaacgtt tatgattacg
    14941 agaaaattcg ggtccatagg tttctttaat gtaattgctt gcttctagta tagcggaatc
    15001 ggcaatacga gtggagtctg tacgcatata cgtaattaag ccgactgtcc cttgtttacc
    15061 aagtgtaatt ccttcataca attgttgggc aagcatcatt gtttttcttg tacgataatt
    15121 tagttttcga gctgcttctt gttgcaaact tgaagtagtg aatggtgcag ctggatttct
    15181 aagtctttct tttttcgtta catctgttac gtcaaatgat tttcctttta ttgcagacat
    15241 tacttctttt acatcatctg cagtggaaag ctttttcttt ttaccattta caccataaaa
    15301 attggcttgg aattttttct tccctttaag gaagttaccg tcaattgtcc agtattcttc
    15361 aggtttgaaa ttattgattt ctttttctct atcaataatg attcgaagtg cgatagactg
    15421 aacacgcccc gcactcaaac ctttcttcac ttttttccat agaataggac tgatattata
    15481 tccaactaaa cggtccaaaa ttctgcgtgc ttgttgcgca ttgactaaat ccatgtcaat
    15541 tttacgtggt gttttgaaag attcttttac tgcttccttc gttatttcgt taaatactac
    15601 acgtagtttg tctgattgat ctaactctag gctattggct aagtgccatg caattgcttc
    15661 tccttcgcgg tctggatcgg ctgcgagata gacttttttc gcttttttgg ctgcttgttt
    15721 taattctttt aaaacagggc cttttccgcg aatcgtaata taacgaggtt cgtagtcatg
    15781 ctctgtgtct acacccattt gactcttagg taagtcacga acatgtccca ttgaggcttt
    15841 cactttaaat ttcttaccta aatacttttc aattgttttt gcttttgcag gtgactctac
    15901 aatcactaaa taatctgcca tatctattat attcctccct gatttgggtc aatacacggg
    15961 ctttactcgt tgtcttaatc ctattacagt cttagcctcg cgttcaataa gttttcaatg
    16021 ctgattgttc acataattca gtagtaaata ttagcccttc ctactgggtt tgtcaatggc
    16081 ttttatgaaa aagtccattt tttgatgttt tatatcagct ttctttagca aacttatctc
    16141 aaaaaatcag gaaatgcaag tcaaatcac
//
LOCUS       DASEAA010000052        16106 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.052, whole genome shotgun sequence.
ACCESSION   DASEAA010000052 DASEAA010000000
VERSION     DASEAA010000052.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16106)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16106)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16106
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.052"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..170)
                     /locus_tag="U0342_001373"
     CDS             complement(<1..170)
                     /locus_tag="U0342_001373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2422721.1"
                     /translation="MKKKYILCLFAVMLFCTGFLFGNSQVDAAETDTSNVTYKYIDIS
                     TLTETQKNSIIKG"
     gene            complement(619..1347)
                     /locus_tag="U0342_001374"
     CDS             complement(619..1347)
                     /locus_tag="U0342_001374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2422722.1"
                     /translation="MAQNQTKYSFIAEEIRKRIMNHAYPLNQPIPDEITLAKEFDCSR
                     MTMKKALEVLVLEGLLYRKRGHGTFIIKSALDADRLQIHNQEVNGFTKLLNGKKVISK
                     VIEFKVIFPTEEIAERLHIEMETPIYDILRVRLVKDEPYVLEHTYMPVGVIPGINQQI
                     LEGSIYSYIQDDLNLKIASSYKQIRADKATLLDQQYLDCASDDPVVEVEQTVYLNNGL
                     AFEFSKSRHRYDKFVFTTVNIARR"
     gene            complement(1391..2785)
                     /locus_tag="U0342_001375"
     CDS             complement(1391..2785)
                     /locus_tag="U0342_001375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2422723.1"
                     /translation="MTYKFPENFWWGSAASGPQTEGAANVDGRKPSIWDHWYKIEPGR
                     FFNDVGPTNTSNFYYQYKEDIALMKQTGHNSFRTSIQWSRLIPDGIGEVNPKAVDFYN
                     RVIDEMLANDVEPFMNLYHFDMPMSMQEKGGFESREVVDAYATFAKTCFELFGDRVKH
                     WFTFNEPIVPVEAGYLYDMHYPNVVDFKRATQVAYHTTLAHALAVKEFHALEIPEGQI
                     GIILNLTPSYPRSQNPADLKAAHIADLIFNRSFLDPVTKGEFPADLVEIIREHDALPE
                     YTEEDLAIIKNNIIDILGVNYYQPRRVKAKEYAAHPDAPFMPEHLFDNYEMPYRKMNP
                     YRGWEIFERAIYDIAINLRDNYDNIPFFISENGMGVEGESRYRNADGMIEDTYRIDFI
                     KSHLKWLHKAIEEGSNCHGYHLWTFMDCWSWANAYKNRYGLVEVDLDNNFKRTIKASG
                     HWYKELSENNGFED"
     regulatory      2906..3007
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00167"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="purine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="guanine and/or adenine"
                     /db_xref="RFAM:RF00167"
     gene            3101..4396
                     /locus_tag="U0342_001376"
     CDS             3101..4396
                     /locus_tag="U0342_001376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM2422724.1"
                     /translation="MDKFFKLRENKTTVRTEILAGLTTFLSMAYVLFVNPSMLATTGM
                     ELKAVFVATILASVVGSLAMGLIANYPIGLAPGMGLNAFFAYTVCAQWGIPWQTALAG
                     VLVSGLVFICLTISGLREKIVNAIPTELKFAVGAGIGFFIAFLGLKNAGIIVPNESTI
                     VALGDLHSGPVLLAVFGIVVTVAYMTIGWKGAIFFGMATTAVAGMLFGLIDVPTQVVS
                     SVPSMESTFGQAIIHLPDIFTPQMLIVILTFFFIDFFDTAGTLVAVATQAGFVKDNKI
                     PRAGRSLFSDSLATVFGAIFGTSTTTSYVESTAGVAVGGRTGLTAVVIAICFSLSLFF
                     SPLLGVITSAVTTPALVIVGILMIGNVAHIDWTKFEVAVPSFFVILMMVLTFSIATGI
                     AIGFIFYPITMVLKGRYKEVHPIMYVMMVLFILYFMFVV"
     gene            complement(4439..5470)
                     /locus_tag="U0342_001377"
     CDS             complement(4439..5470)
                     /locus_tag="U0342_001377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoid-associated protein"
                     /protein_id="HEM2422725.1"
                     /translation="MPDFSYAKITKLVVHFAGNKAREEGTEVSANVLADIGSEMNQTL
                     ASIFLEPFNKDEYYQFTHETDLDFNEVRTFAANMFVAEDEFLDESKKILEHLYSETTH
                     PNIKSGDVWIFFIEGCVVDGDFTNGIGIFKVENKEVFLKNDFNGREFQIGYDKGITGT
                     DLDKGCLVFNVDHDTGNKVLILDRLNRGDSVYWKDKFLSIDKITDEKFYTEGFVEVCT
                     DYIKQREESLLDKSNFVKATSEYLAGEETLNIAEFARTTIEKPEEITEFNTMVDTFER
                     ENNVRFPETFQLDEEKREKLSKKIRKTIKLGKNISVVVKDLEQLEETDFVQGYDEEKG
                     KNYMIVYYD"
     gene            5547..5843
                     /locus_tag="U0342_001378"
     CDS             5547..5843
                     /locus_tag="U0342_001378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MGMT family protein"
                     /protein_id="HEM2422726.1"
                     /translation="MIPADFEDRVYTVVRQIPRGKVTTYGQIAYMIGFPKNARLVGAT
                     LKHSKRDQITPCHRVINAAGRLVPGWEEQRELLLSEGVTFKENGHVKMKDHFWQ"
     gene            complement(5828..6655)
                     /gene="hisJ"
                     /locus_tag="U0342_001379"
     CDS             complement(5828..6655)
                     /gene="hisJ"
                     /locus_tag="U0342_001379"
                     /EC_number="3.1.3.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol-phosphatase HisJ"
                     /protein_id="HEM2422727.1"
                     /translation="MKRDGHTHTEFCPHGTHDDVEEMVLKAIELDFDEYSIVEHAPLS
                     SEFMKNTAGDKEAVTTASMAMSDLPYYFKKMNHIKKKYASDLLIHIGFEVDYLIGYED
                     FTRDFLNEYGPQTDDGVLSLHFLEGQGGFRSIDFSAEDYNEGIVQFYGGFEQAQLAYL
                     EGVKQSIEADLGLFKPRRMGHISLCQKFQQFFGEDTSDFSEEVMEKFRVILALVKKRD
                     YELDFNTAGLFKPLCGETYPPKKIVTLASELQIPFVYGSDSHGVQDIGRGYSTYCQK"
     gene            6807..7985
                     /locus_tag="U0342_001380"
     CDS             6807..7985
                     /locus_tag="U0342_001380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003729310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEM2422728.1"
                     /translation="MNLNKNLPTGTRDKLFREAQAAYKIEQQVNHYFEKRGFKRIETP
                     VIEFEDVFSSEHQADAKLYRFFDEKGRLTVLRPDMTLPIGRVVSTTGVMLPLKLSYSG
                     KIFRANEDFGGEQNEQTQAGIEIIGYPSIKAEIECILSGIGVLNALEIPNFQIELGHA
                     AIYRRVIQLLNLSETAEIDFRQLIQNKSLTGIKRFVANNPSTLDDFILAIPRLFGPAT
                     AILNQAKSLTTDKGILTALREMETIVEAVSYTADISVDLGLVQDFHYYTGIIFRGYAD
                     LAADNFLSGGRYDHLLEQFTSSSSPAVGLALNLDSLTTLQNRAGIIKKQTPTTLLIHY
                     DLEALPQAEKFMQETPNSELSFFETASNAISFAKKWHIPEVVHVSSQGIQTIFQREVD
                     "
     gene            7985..8626
                     /locus_tag="U0342_001381"
     CDS             7985..8626
                     /locus_tag="U0342_001381"
                     /EC_number="2.4.2.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase"
                     /protein_id="HEM2422729.1"
                     /translation="MKALKIALTKGRLEKDAVALLEKAGIDCSSMTDKKRKLIFHSST
                     QPISFILVKAVDVMTYVKHGVADIGIVGKDVLMEASKSHYEMLDLEIGKCQFCLASTP
                     DFDPSSYRRKIIATKYPTVASKFFREKGEDVEIIKIEGSVEIAPVLGLADAIIDIVET
                     GSTLKENGLLIYEKMYPISARLIVNKASLKQNKTQIFQLIDQLEQVIKEERAE"
     gene            8623..9906
                     /gene="hisD"
                     /locus_tag="U0342_001382"
     CDS             8623..9906
                     /gene="hisD"
                     /locus_tag="U0342_001382"
                     /EC_number="1.1.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidinol dehydrogenase"
                     /protein_id="HEM2422730.1"
                     /translation="MKILTGTVNELLNELKIETDTNTSIQVETEVKTIIEKVKTAGDQ
                     ALFDFTSKFDGVGLTELRVPAADIQAASVKIEPAFLDALQQAKVNIESFHSKQKQHAF
                     LDSEKDGVIRGQLIRPLETVGVYVPGGTAAYPSSVLMNVLPAKIAGVKRIVMITPPGE
                     NGINPYVLASAQLAGVDEIYQVGGAHGIAALAHGTESIPKVDKIVGPGNIYVATAKRE
                     VFGLVDIDMIAGPSEIVVLADENANPAFIAADLLSQAEHDILARAILITTSKKIAEET
                     QNEIDKQLENLPRKAIAQKSIETRGKIIIAATTQEMFDIMNEIAPEHLEVQLENPMNY
                     LYQIKNAGSIFLGSYASEPLGDYFAGPNHVLPTSGTAKFFSPLGVEDFTKRSAFISYT
                     KEALAKEKDAIVLLAKKEGLDAHAKAIQIRFEEEN"
     gene            9907..10491
                     /gene="hisB"
                     /locus_tag="U0342_001383"
     CDS             9907..10491
                     /gene="hisB"
                     /locus_tag="U0342_001383"
                     /EC_number="4.2.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazoleglycerol-phosphate dehydratase HisB"
                     /protein_id="HEM2422731.1"
                     /translation="MRTATKTRITAETSIELSINLDSQAESIISTGVGFLDHMLTLFA
                     KHSRITLNVKADGDTYIDAHHTVEDIGITLGLCLKEALADKASINRYGSAYVPMDESL
                     GFCALDLSGRSYLVFDAELTNPKLGDFDTELVEEFFQAVAFNTEMNLHLRVLYGKNTH
                     HKIEALFKAFGRALREAITINPEIKGVNSTKGVL"
     gene            10492..11118
                     /gene="hisH"
                     /locus_tag="U0342_001384"
     CDS             10492..11118
                     /gene="hisH"
                     /locus_tag="U0342_001384"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisH"
                     /protein_id="HEM2422732.1"
                     /translation="MIVIIDYDTGNTKSISKALDFIGLQNKISSDKTEIAQADGVILP
                     GVGAYPEAMQELTRRGLDKTLKEIATAGKPILGVCLGMQLLLESSNEHSYTKGLGLIP
                     GHVEMLPDESEFAVPHMGWNQLQIKRTTPLTQNIAGEYVYYVHSYYANCPEAYIIATS
                     GYSIDIPGMINNGNIYGAQFHPEKSGQIGLEILKGFKEVIRSCKSSQQ"
     gene            11097..11819
                     /gene="hisA"
                     /locus_tag="U0342_001385"
     CDS             11097..11819
                     /gene="hisA"
                     /locus_tag="U0342_001385"
                     /EC_number="5.3.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-(5-phosphoribosyl)-5-[(5-
                     phosphoribosylamino)methylideneamino]imidazole-4-
                     carboxamide isomerase"
                     /protein_id="HEM2422733.1"
                     /translation="MQIFPAIDLKNGQCVRLFQGDFSKKTVVNEDPIAQAKAFATDGA
                     TYLHIVDLDGALEGRPINLEIIQRMKKAAKIPVQVGGGIRSMAQVDYYLESGIDRVII
                     GSAALTDPDFLRAAVQKYGAKIVAGIDAKNGFVATRGWLDVSQVSYLDLAKRMEKVGV
                     ETIIYTDISRDGTLTGPNLEQMANLKEHVKVSLIASGGVSSRADLEALAQLGLYGAIA
                     GKALYNHDISMSDIVEVEQIAY"
     gene            11809..12564
                     /gene="hisF"
                     /locus_tag="U0342_001386"
     CDS             11809..12564
                     /gene="hisF"
                     /locus_tag="U0342_001386"
                     /EC_number="4.1.3.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="imidazole glycerol phosphate synthase subunit
                     HisF"
                     /protein_id="HEM2422734.1"
                     /translation="MLTKRIIPCLDVTAGRVVKGVNFVSLTDVGDPVEIAKAYNEAGA
                     DELVFLDITATVELRQTMIDVVERTAEQVFIPLTVGGGISSVSDMKELLQAGADKISL
                     NSAAIKRPELIQEGAAKFGNQCIVVAIDAKWNGTNWSVFTRGGRNDTGLDAIEWAKKA
                     VQLGAGEILLTSMDGDGTKNGYDIPLTKAISAAVSVPVIASGGCGNAAHMAEVFEKTK
                     ATAALAASIFHYGELSIKNVKTTLLEKGVNIRP"
     gene            12561..12878
                     /gene="hisI"
                     /locus_tag="U0342_001387"
     CDS             12561..12878
                     /gene="hisI"
                     /locus_tag="U0342_001387"
                     /EC_number="3.5.4.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-AMP cyclohydrolase"
                     /protein_id="HEM2422735.1"
                     /translation="MTSVDFSKGLVPTIILDDQNGDVLMLAYMNEESYQKTLETGYTW
                     FFSRSRNELWNKGATSGHTQKVKQIWTDCDNDTLLIRVTQIGPACHTGKKSCFFNLIK
                     EDF"
     gene            12879..13190
                     /gene="hisE"
                     /locus_tag="U0342_001388"
     CDS             12879..13190
                     /gene="hisE"
                     /locus_tag="U0342_001388"
                     /EC_number="3.6.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoribosyl-ATP diphosphatase"
                     /protein_id="HEM2422736.1"
                     /translation="MLNDLYEEIKLRKTQPREGSYTNYLFDKGLDKILKKVGEEATEV
                     VIAAKNNEQELIAEVSDLTYHLLVLLAEQNIPLSKIQAELQNREGKLSTTRDRKEIND
                     L"
     gene            13683..15059
                     /gene="gdhA"
                     /locus_tag="U0342_001389"
     CDS             13683..15059
                     /gene="gdhA"
                     /locus_tag="U0342_001389"
                     /EC_number="1.4.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-specific glutamate dehydrogenase"
                     /protein_id="HEM2422737.1"
                     /translation="MAQTSTIQNDTKAAEEYAARVFETIKLRNPGETEFHQAVEEFLN
                     SVIPALAKEPKYEANGILEQLTEPERLISFRVPWVDDSGTVHVNRGYRVQFNSAIGPY
                     KGGLRFHPSVTGSIVKFLGFEQIFKNSLTGLPIGGGKGGSDFDPKGKSDSEVMRFCQS
                     FMTELQKHIGPDTDVPAGDIGVGGREIGYLFGQYKRLRGAYDAGTITGKGLSYGGSLA
                     RTEATGYGLVYFTVEMLEAAGETIRGKKIVVSGSGNVAIYAIEKAHELGAKVVACSDS
                     AGFVYDKEGIKVETVKQLKEVERKRISEYTTIHPSAEYYAGGDVWSVPCDIALPCATQ
                     NEINADQARALVKNGVIAVAEGANMPSTLDAVDIYHENKVLFGPAKAANAGGVAVSAL
                     EMAQNSTRMSWTFQTVDEHLQNIMKDIYKNSSNAASEYGAPGNLVIGANIAGFLKVAD
                     TMISQGII"
     gene            complement(15102..16007)
                     /locus_tag="U0342_001390"
     CDS             complement(15102..16007)
                     /locus_tag="U0342_001390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2422738.1"
                     /translation="MSIQTIFGNGKYNWINIDTDSTDNLADFYEKYHIDDEVIAYSID
                     RNERAHFEYDQKSNTFVIVFNVPDQRKMDNHYETIPMVFIIKDKQLITITNNDNQYIT
                     RKMKRYLKESDDVTIFQFLFSSLYFIMDAFFPYVEEMDTDRRTINDKLKIKTTKKNLL
                     SLSDLETGIVYFVSASKQNAALLEQMKAHLIYRELNEVEKEQFEDALIEARQLVEMTG
                     LSSQILQQLSGTYNNILNNNLNDTMKILTALSILLTVPTIITGFFGMNMPLPLEHNTF
                     GWIVTIFISVILWFGLSFILRKLMR"
BASE COUNT         4963 a         3376 c         2897 g         4870 t
ORIGIN      
        1 cctttgataa tactattttt ttgtgtttcc gttaatgtgc tgatatcaat gtatttatac
       61 gtgacattgc ttgtatccgt ttcagcagca tcaacttgcg aatttccaaa aaggaaaccc
      121 gtacaaaata acatcactgc gaataagcaa agaatgtatt ttttcttcat agtgcaatcc
      181 ctcccccata taattaaatt ctcattttaa ctgctcactc ttcctatcaa aaagagagca
      241 aaactagcgc ttaattaagc taaacaatta tatattaggc aaaaaacatt atcaatgagt
      301 tagaatgtgt ctattttatg aacaaacaaa ttttcaaacc aattaaataa tcttttacta
      361 gaagtaatac tattctattc cattccacag tttcatatcg cttaaacaat agaactatat
      421 ttaaaatctg tacataattg ggctaaatat tataaaagaa ctctaaacta ttagcaagtg
      481 tataaatatg tctatattgt gaacgattct attcttttaa aaaaagtgaa tctaataatg
      541 acctatactt cattaattct tcctaaaaaa agaaactaga taaaatgatt tctcactttt
      601 tctagtttct tttttacttt atcgtctagc tatattcact gttgtaaaca cgaatttatc
      661 ataacggtgg cgcgatttgg aaaattcaaa cgcgagacca ttgtttaaat acacggtttg
      721 ttctacttcg acaacgggat catcagaagc gcagtcgaga tattgctgat caagcagtgt
      781 cgctttatcc gcgcgaattt gtttatagga actagcaatt tttaggttca aatcgtcttg
      841 aatgtacgaa taaatcgacc cctctaaaat ttgctgattg atgcctggga taaccccaac
      901 tggcatatac gtatgttcta gcacatatgg ctcatctttc actagccgaa cacgaagaat
      961 gtcatagatt ggtgtttcca tttcgatatg aagacgctct gcaatttctt cagttggaaa
     1021 gataacttta aactcaataa ctttactaat aactttcttg ccgttcaaaa gtttagtgaa
     1081 gccgtttacc tcttggttat gaatctgtaa gcggtccgcg tccagcgccg atttgataat
     1141 gaaagtacca tgtccgcgtt tacgatatag taagccttca agaacaagga cttccagtgc
     1201 ttttttcatt gtcattcgac tacaatcaaa ctctttcgcc aaagttatct catcaggaat
     1261 aggttgatta agcggatagg cgtgattcat aattcttttg cggatttctt cagcaataaa
     1321 gctatatttt gtctggttct gagccacgga agttcacctc tttacacata atacttttat
     1381 tttatcacat ttagtcttca aaaccattgt tttctgaaag ttctttgtac caatgtccgg
     1441 atgcttttat agtacgtttg aaattattgt ctaaatcaac ttctactaag ccataacggt
     1501 ttttgtaagc attcgcccag ctccagcaat ccatgaatgt ccaaagatga taaccatgac
     1561 agttagaacc ttcttcaatg gctttatgca gccatttcaa gtgactctta atgaaatcga
     1621 ttcggtacgt atcttcaatc attccgtctg cattacggta gcgactttcg ccttctacac
     1681 ccataccatt ttcagaaatg aagaatggaa tattatcgta gttatcacgc agattaatcg
     1741 caatatcata aattgctctt tcgaaaattt cccaaccacg atatggattc attttgcggt
     1801 aaggcatttc atagttatca aaaagatgtt ctggcataaa tggtgcatcc ggatgagctg
     1861 cgtattcttt cgctttcaca cgacgcggtt ggtagtagtt tacaccaaga atatcaataa
     1921 tgttgttttt aattatcgcc aaatcttctt cagtatattc tggaagcgcg tcatgttcgc
     1981 gaataatttc aacaaggtca gctgggaatt ccccttttgt aaccggatca aggaaactac
     2041 ggttgaaaat tagatctgca atatgagctg cttttaaatc tgccggattt tggcttcttg
     2101 gatacgacgg tgttaagttt aaaatgattc caatttggcc ttctggaatt tcaagtgcgt
     2161 ggaattcttt aacagcaagc gcatgtgcca aagtagtatg gtaagcaacc tgagtcgcac
     2221 gtttaaaatc aacgacattc ggatagtgca tatcgtataa gtaacctgct tcaacaggaa
     2281 caattggttc attaaaagta aaccaatgtt tcacacgatc tccgaataat tcaaaacatg
     2341 ttttcgcaaa agttgcatac gcgtcaacta cttcacggct ttcaaaaccg cctttttctt
     2401 gcatcgacat tggcatatca aaatgatata aattcataaa tggttccacg tcatttgcaa
     2461 gcatttcatc aataacgcga ttgtaaaaat caaccgcttt cggattcact tcgccaatac
     2521 catctggaat aagacgtgac cactgaattg aagtacggaa agaattatgc ccagtttgtt
     2581 tcattaaagc aatatcttct ttatattgat agtaaaaatt agatgtattc gtaggtccta
     2641 catcgttaaa gaaacgacct ggttcgattt tgtaccagtg atcccaaata ctcggttttc
     2701 taccatctac atttgctgcg ccttctgttt gtgggccgga cgccgcactt ccccaccaaa
     2761 aattctctgg aaatttataa gtcatttttc tacctccaac tattatttgc ttttattata
     2821 ccttatttat ttaaaagtat aaacttattt atttaaaagt tcgtttttta tttttatttc
     2881 ttacacgtat tgccaaaaat cggctaatcc gctacaataa taaagtcgta taagttcggt
     2941 aatatggacc gttcgtttct accaggcaac cgtaaaatgc caggctacga gctattgtaa
     3001 aatttaatag ggattttttt gctattttta tttattattc ccttttttac ctaggctctt
     3061 tccgttatgt gcgacaacat aaatagggag gcttttttta atggataaat ttttcaaact
     3121 acgcgagaac aagacgactg ttcgaacaga aatactcgcg gggctaacga ctttcttatc
     3181 gatggcttat gtacttttcg tcaacccatc tatgcttgca acaactggaa tggaattaaa
     3241 agctgttttt gtggcgacga ttcttgcttc tgttgtagga tcgcttgcaa tgggactaat
     3301 cgctaattac ccgattggac ttgcaccagg tatgggacta aatgcgtttt tcgcttatac
     3361 cgtttgtgcg cagtggggaa ttccttggca aacggcgctg gctggtgttc tcgtttctgg
     3421 cttagtgttc atttgtttaa ctatttctgg acttcgcgaa aaaatcgtta atgcaatccc
     3481 aacggaacta aaattcgcag tgggagcagg tattggtttt tttatcgcct ttttagggct
     3541 taaaaatgct ggaattattg tgccaaatga atctactatt gtagcgcttg gtgacttaca
     3601 ttctggccca gtgttactgg ctgttttcgg gattgttgtt actgttgctt acatgacaat
     3661 tggttggaaa ggtgcgattt tctttggaat ggcaacaacc gctgttgctg gaatgttgtt
     3721 tggactgatt gatgtgccga ctcaagttgt ttcatctgta ccaagtatgg agtcaacgtt
     3781 tggtcaagca attattcact taccagatat ttttacacca caaatgctca ttgttatttt
     3841 gacatttttc ttcattgatt tttttgatac tgccgggaca cttgttgcgg ttgcgactca
     3901 agctggattt gtaaaagata acaaaattcc gcgcgcaggt cgttcgctat tctcggattc
     3961 acttgcaaca gtatttggag cgattttcgg gacttcaaca acgacttctt atgtagaatc
     4021 tactgctggg gttgctgttg gtggtcggac aggtttaact gccgttgtta tcgcaatctg
     4081 tttctcactg tcactattct tctcgccgct tcttggcgta attacaagtg cggttacgac
     4141 tccagcgctt gtcattgttg ggattttaat gattggaaat gtcgctcata ttgattggac
     4201 taaattcgaa gtagctgttc cgtccttttt cgttatttta atgatggtac tgactttctc
     4261 tatcgctact ggtatcgcaa ttggtttcat tttctatcca atcaccatgg tacttaaagg
     4321 acgctacaaa gaagtgcatc cgattatgta cgtgatgatg gtactgttta tactgtactt
     4381 tatgttcgtc gtttagacag caaaaaaacc ggggattccg catcctcggt tttttcgttt
     4441 aatcataata cacaatcata tagtttttgc ctttttcctc gtcgtatcct tgtacaaaat
     4501 cagtttcttc cagctgttct aaatctttca caacaaccga aatatttttg ccaagcttaa
     4561 tcgttttacg tatttttttc gatagttttt cgcgcttttc ttcatctaat tggaatgttt
     4621 ctggaaaacg gacattgttt tctcgttcga acgtatccac cattgtattg aattcggtaa
     4681 tctcttccgg tttttcaatt gtcgtgcgag caaattcagc aatattcaac gtctcttctc
     4741 ctgctaaata ttccgatgtc gcttttacaa aattagattt atcaagcagt gattcctcgc
     4801 gttgtttaat ataatccgta caaacttcca caaaaccttc cgtgtaaaat ttctcatcgg
     4861 ttatcttatc aatactcaaa aacttatctt tccaataaac cgaatcgccg cggttaagcc
     4921 ggtctaaaat caacacttta tttcccgtgt catgatccac attgaaaacc aagcaacctt
     4981 tatctaaatc cgtcccggta atccctttat catagccaat ttggaattct ctgccattga
     5041 aatcattttt aagaaaaact tctttgtttt cgactttaaa aatcccgatt ccgttcgtga
     5101 aatcaccatc gacaacgcag ccctcaataa agaaaatcca aacatcgcca cttttaatat
     5161 tcgggtgggt tgtttcgcta tataaatgct ctaaaatctt cttggattca tccagaaact
     5221 cgtcctccgc gacaaacata ttcgcagcaa aagtacgaac ttcattaaaa tccaaatctg
     5281 tttcatgcgt aaattgataa tattcatctt tattaaatgg ctctaagaaa atcgaagcta
     5341 gtgtttgatt catttccgag ccaatgtcag cgagcacatt cgctgatact tctgttcctt
     5401 cttctctcgc tttatttcca gcaaaatgga ccacgagttt agtaattttt gcgtatgaaa
     5461 aatctggcat tcctttatca tcctaacttt tataaaatag gtatttcctg tatactaaat
     5521 ttattatgaa caaatggagg tacgtaatga ttccagcaga ttttgaagac cgtgtttata
     5581 cagtcgtgcg ccaaataccg cgcggtaaag tgactacata tggccaaatc gcctatatga
     5641 ttggctttcc taaaaacgcc agactcgtag gtgctacgct aaaacattcg aagcgtgacc
     5701 aaattacgcc ttgccatcgt gtcatcaatg cagctggtcg acttgtcccc ggttgggaag
     5761 agcaacgcga actcctttta tcagaaggtg tgacatttaa agagaatgga cacgtcaaaa
     5821 tgaaagatca tttttggcaa taagtgctat atccacgtcc tatatcttga acaccgtgcg
     5881 agtccgaccc atagacaaac ggaatctgta actcgctagc taatgtcact attttctttg
     5941 gtgggtatgt ctctccgcaa aggggcttaa atagtcccgc cgtattaaaa tcaagttcat
     6001 agtctcgttt tttcactaaa gcaagaatca cccgaaattt ctccattact tcctcagaaa
     6061 aatcgcttgt atcctcccca aagaattgct gaaacttctg acacaatgaa atatgcccca
     6121 ttctccgcgg tttaaaaagt cctaaatccg cttcaattga ctgttttaca ccttctaaat
     6181 aagcaagttg cgcttgttca aacccgccat aaaattgtac aattccttca ttataatcct
     6241 ccgctgaaaa atcaatcgaa cgaaaaccac cttgcccctc taaaaaatgc agcgacaaca
     6301 caccatcatc cgtttgtggt ccatactcat tcaaaaaatc ccgcgtaaaa tcctcataac
     6361 caatcaaata atccacttca aacccgatat gtattaataa atcgctcgca tattttttct
     6421 ttatatggtt cattttctta aaataataag ggagatcact cattgccata ctagccgttg
     6481 tcacagcttc cttgtcccca gctgtatttt tcataaattc actcgaaagt ggcgcgtgct
     6541 ctactataga atactcatca aaatccagtt caatcgcttt taaaaccatt tcttccacgt
     6601 catcatgcgt accatgtgga caaaattctg tgtgcgtatg cccgtctctt ttcatattca
     6661 accctctttc aaaattcttt tccctaagtg ctctaaatgg tacactaatt ataccataag
     6721 caactatttt tctattcatt atttacaaaa acactttaac gtgctaatat gctaataaac
     6781 taaaatatcg taaaggagct aaccagatga acttaaataa gaacttacca accggaacac
     6841 gtgataaact ctttcgtgaa gcacaagctg catacaaaat tgagcaacaa gtgaatcatt
     6901 attttgaaaa acgtggattt aaacgtattg aaacacctgt tatcgagttt gaagatgtct
     6961 tttcttctga acatcaagcc gatgcgaagt tataccgttt ctttgacgaa aaaggacgtt
     7021 tgacagttct acgtccggac atgacccttc caattggtcg agttgtgagt acaactggtg
     7081 tgatgctccc tctaaaactt tcttatagtg gaaaaatttt tcgtgccaat gaagattttg
     7141 gtggcgaaca aaacgaacaa acgcaagctg gaattgaaat cattggctat ccttcgatta
     7201 aagcagagat tgaatgtatt ttaagtggaa tcggggtttt aaatgctcta gaaattccga
     7261 attttcaaat tgaactcgga catgcagcaa tttatcgtcg tgttatccaa cttttaaatc
     7321 tctccgaaac agctgaaatt gattttcgcc aactaattca aaataaaagc ttaactggta
     7381 ttaaacgatt tgttgccaat aatccaagta cacttgacga ttttattcta gccataccaa
     7441 gattatttgg cccagcgaca gctattttaa accaagcaaa aagtttaacg actgacaaag
     7501 gaattttaac ggcactgcgc gaaatggaaa ccattgtgga agctgtttct tacacagcag
     7561 atattagtgt cgatttagga ctcgtacaag attttcatta ttatacaggt ataattttta
     7621 gaggatacgc tgaccttgct gctgataatt ttttaagcgg cggccgttac gatcacctac
     7681 tagaacaatt caccagctct tcctccccag cagttggttt ggctcttaat ctcgactccc
     7741 tcacaactct acaaaaccgc gctggcatca tcaaaaaaca aacgccaaca actcttttga
     7801 tccactacga ccttgaagca ctcccacaag cagaaaaatt catgcaagaa acaccaaata
     7861 gtgaattaag tttttttgaa acagcatcaa acgccatctc ttttgcaaaa aaatggcata
     7921 ttcccgaagt cgttcacgtc tcgagccaag gcatccaaac tattttccaa agggaggtgg
     7981 actgatgaaa gctctaaaaa ttgctctaac gaaaggtcga ctggagaaag acgcagtggc
     8041 acttttggaa aaagctggga ttgactgttc ttctatgaca gataaaaagc gtaaactaat
     8101 ttttcatagt agcactcaac caatctcttt tattttagta aaagcggtcg atgtcatgac
     8161 ttacgtaaag cacggggttg cggatattgg catcgttggt aaagacgttt taatggaagc
     8221 atctaaatcc cattatgaaa tgctcgacct tgaaatcggc aaatgccagt tttgccttgc
     8281 ttctacacct gactttgacc cgagcagtta tcgacgaaaa atcatcgcaa ccaagtatcc
     8341 aactgttgct tccaaatttt tccgtgaaaa aggcgaagat gtagaaatta tcaaaatcga
     8401 aggatccgtc gagattgctc cagtgcttgg tcttgctgat gccatcatcg atatcgtcga
     8461 aactggctcc actttaaaag aaaacggctt acttatttat gaaaaaatgt atccaatctc
     8521 cgcccgtctg attgtcaata aagcttcctt aaaacagaac aaaacgcaaa ttttccaatt
     8581 aatcgaccaa ttagaacaag tgataaagga ggagcgcgct gaatgaaaat tttaaccgga
     8641 acagtaaatg agctattaaa cgagctcaaa atagaaactg atacgaacac ttccatccag
     8701 gtggaaaccg aagtaaaaac gattatcgaa aaagtcaaaa cagctggcga ccaagcccta
     8761 tttgacttca catccaagtt tgacggcgta gggctcaccg aactccgcgt tccagccgct
     8821 gacatccaag ctgcaagcgt aaaaatcgaa cctgccttct tagacgcgct ccaacaagca
     8881 aaagtaaata tcgaaagttt ccacagcaag caaaaacaac atgctttcct tgatagtgaa
     8941 aaagacggcg tcattcgagg gcaattaatt cgtccactag aaaccgtcgg cgtttacgtt
     9001 cccggtggca cagcagccta tccttcatcg gttttaatga atgtgttgcc agccaaaatt
     9061 gccggagtaa agcgaatcgt aatgattacc cctcccggtg aaaacggtat taatccttac
     9121 gttctagcct cagctcaact agctggtgtg gacgaaattt accaagttgg cggtgcacac
     9181 ggaatcgccg ctctagctca cggaacagaa tctatcccta aagtagataa aatcgtcggt
     9241 cctggaaata tctatgtcgc cactgccaaa cgtgaagtat tcggcttagt tgatattgac
     9301 atgatagccg gtccatccga aatcgtcgtg ctcgcagatg aaaacgccaa tcctgctttt
     9361 atcgcagccg acttactctc ccaagcagag cacgatattt tagcccgtgc tatcttaatc
     9421 acaactagta aaaaaatcgc cgaggaaaca caaaatgaaa ttgacaaaca gctagaaaat
     9481 ctaccgcgaa aagcgattgc tcagaaatct atcgaaacac gaggaaaaat cattatcgca
     9541 gcaaccacac aagaaatgtt cgatatcatg aacgaaatcg ccccagaaca cttagaagta
     9601 caacttgaaa atccgatgaa ctatctctat caaattaaaa acgctggctc cattttctta
     9661 gggagttatg catcggaacc tcttggcgac tattttgctg gcccaaatca cgtcttacct
     9721 acaagtggta ccgcaaaatt cttctctcct cttggtgttg aagattttac caaacgttcc
     9781 gcctttattt cttatacaaa agaagcactc gcaaaggaaa aagatgctat cgttttactt
     9841 gctaaaaaag aaggtctaga cgcccatgcc aaagccattc aaattcgttt tgaggaggaa
     9901 aactaaatga gaacagcgac taaaacacgc attactgctg aaacttctat tgagctttcc
     9961 attaacctag attcccaagc agaatcaatt atttctactg gagtcggatt tttggatcac
    10021 atgctcaccc ttttcgccaa acacagccga ataactttaa atgtaaaagc agatggtgat
    10081 acatatatcg atgcgcatca caccgtagaa gacatcggca tcacactcgg gctttgttta
    10141 aaagaagcac ttgctgataa agcaagcatt aatcgttacg gctccgctta tgtaccgatg
    10201 gacgaatcac ttggcttttg cgcactagat ttaagtggtc gttcttattt agtttttgac
    10261 gccgaattaa caaaccctaa actcggtgat tttgacacag aactagtgga agaatttttc
    10321 caagcagttg cctttaacac ggaaatgaac cttcatctcc gcgttcttta tggcaaaaac
    10381 acgcatcata aaatcgaagc actttttaaa gcattcggtc gtgctcttcg tgaagcaatc
    10441 acgattaacc cagaaatcaa aggtgtaaat tcaactaaag gggtcctgta aatgattgtt
    10501 attattgact acgatacagg aaatacgaaa agcatcagta aagcccttga ttttatcggg
    10561 ttacaaaaca aaatttctag tgataaaaca gaaatcgctc aagctgatgg tgttattttg
    10621 cccggagttg gtgcttatcc agaagccatg caagaactca ctcgacgcgg attagataaa
    10681 acattaaaag aaattgctac cgctggtaaa ccaattcttg gcgtttgtct tggtatgcaa
    10741 ctattactcg aatcaagtaa cgaacatagc tatactaaag ggctcggcct cattcccggt
    10801 catgtcgaaa tgctaccaga cgaatccgaa tttgccgttc cgcacatggg ctggaatcaa
    10861 ttacaaatca aacgcaccac cccgcttaca caaaacattg ctggagaata tgtctattac
    10921 gttcattctt actatgccaa ctgtccagaa gcttacatta tcgcaacaag tggttattct
    10981 attgatatcc ctggcatgat aaataacggc aatatttacg gagcacagtt ccatcctgaa
    11041 aaaagcggcc aaatcggtct tgaaatttta aaaggtttta aggaggtcat tcgttcatgc
    11101 aaatcttccc agcaatagac ttaaaaaatg gacagtgcgt ccgtctcttc caaggcgact
    11161 tctctaaaaa aacagttgtc aatgaagacc caattgccca agcaaaagca tttgctacag
    11221 acggcgcaac ctatttgcac atcgtcgacc tagacggtgc attagaagga cgtcctatca
    11281 atctagaaat tattcaaagg atgaaaaaag cagctaaaat ccctgttcaa gttggtggag
    11341 gaattcgtag catggcgcaa gtggattatt atcttgaatc cggcatcgac cgcgtgatta
    11401 tcggttctgc cgctctaaca gatccagatt tcctacgtgc ggcagtccaa aaatacggag
    11461 ctaaaattgt agcaggtatc gatgccaaaa acggttttgt cgcaacaaga ggttggctcg
    11521 atgtcagtca ggtaagctat ttagatttgg ctaaacgaat ggaaaaagtg ggtgttgaga
    11581 caatcattta cactgatatt agccgtgatg gcacgctaac tggacctaat ttagaacaaa
    11641 tggcaaatct caaagaacac gttaaagtta gtttaattgc ttctggcgga gtgagcagtc
    11701 gtgcagattt ggaagcactc gcccaactcg gcttatatgg agcaattgcc ggaaaagccc
    11761 tttataatca tgatatttcc atgtcagata ttgtagaggt ggaacaaatt gcttactaaa
    11821 agaatcatcc catgtcttga tgtcacagca ggtcgagtcg tcaaaggtgt taattttgtt
    11881 tccttaacag atgtcgggga ccctgtcgaa attgctaaag cttataatga agctggtgcc
    11941 gatgagctcg tctttcttga tatcacggca actgtcgaac tccgtcaaac catgatagat
    12001 gttgtggaac gaactgctga gcaagttttt attccactca cagttggtgg gggtatcagt
    12061 agtgtttctg acatgaaaga acttcttcaa gccggagccg acaagatttc gcttaattcc
    12121 gccgccatca aacgaccaga actcatccaa gaaggagcag caaaattcgg aaaccaatgt
    12181 atcgttgtcg caattgatgc aaaatggaat ggtacaaatt ggagcgtctt cacgagaggc
    12241 ggtcgaaatg ataccggact tgatgctatt gaatgggcta aaaaagctgt acaacttggt
    12301 gctggtgaaa tcctactaac aagtatggac ggcgatggaa ccaaaaacgg ttacgatatt
    12361 ccgctcacaa aagcaatttc agcagcagtt tccgtcccag tcattgcttc aggcggttgc
    12421 gggaatgccg cacatatggc cgaggttttt gaaaaaacaa aggcaaccgc cgctctcgct
    12481 gcaagcattt tccactacgg tgaactaagc atcaaaaatg tcaaaacaac cttactcgaa
    12541 aaaggagtga atattcgtcc atgacttctg tagatttttc taaaggtctt gtcccaacta
    12601 ttatcctaga cgatcaaaat ggcgacgttt taatgctcgc ttatatgaac gaagaaagtt
    12661 atcaaaaaac ccttgaaact ggctatactt ggtttttttc gcgctccaga aacgaacttt
    12721 ggaataaagg cgcgacaagc ggacatactc aaaaagtaaa acaaatctgg accgattgtg
    12781 ataacgacac attacttatc cgcgtaaccc aaatcggtcc agcctgccac accggcaaaa
    12841 aaagctgctt tttcaatctt ataaaggagg atttttaaat gttaaatgac ctatatgaag
    12901 aaattaaact gcgtaaaact caaccaagag aaggctccta taccaactat ttgttcgata
    12961 aaggccttga taaaattctc aaaaaggttg gtgaagaagc aaccgaagtc gttattgctg
    13021 ccaaaaataa cgagcaagaa ttaatcgctg aagtatccga tttaacttat cacttgctcg
    13081 ttctcttagc cgagcaaaat attccattat caaaaatcca agcagagctt caaaatcgtg
    13141 aaggaaagct aagcaccact cgcgaccgta aagaaattaa cgatttataa aaacatgaca
    13201 ttttcgtaag cttagagatc attattgtaa gaaaaagcgc atgattttta aatacatttt
    13261 ttatatactt gtttacgtgg agagctttca ttttcccaag agaaagcaaa taatgttaga
    13321 gcaataattc tagtatccga attagtctta tcccttggct cgctttaata ttatttctcc
    13381 ctaatactcc cttaaccgca tccccctggt gcggttattt ttttattaca tcttcaattt
    13441 ctacgcatta aaacctaagc aaacgttctc attaactaca ttttaaaaaa tttcagaaaa
    13501 attggttttt atgcttgaaa atattctcaa caatgtgtaa actaacaaca taggtaagaa
    13561 aagttgacct acttaatgta cacaagccga tgttcttctt gctttataac atcacgtgta
    13621 tttacattaa gttttctact tttccttata gtcaaaatat ttaaacaagg agcgattata
    13681 gtatggcaca aacatccact attcaaaatg acacaaaggc agccgaagaa tacgcagctc
    13741 gcgtgtttga aacaattaaa ctacggaatc ctggcgaaac ggaattccac caagcagttg
    13801 aagaattctt aaactctgtt atcccagccc ttgcaaaaga acctaaatac gaagcaaatg
    13861 gtattttaga acagttaaca gaacccgaac gccttatcag tttccgagtt ccatgggtgg
    13921 atgattctgg cacagtacat gtaaatcgcg gttatcgtgt ccaattcaat agcgcaattg
    13981 gtccatataa aggcggcctt cgtttccacc cttccgttac tggaagcatc gttaaattcc
    14041 tcggttttga acagatcttc aaaaactccc taactggctt accaatcggt ggcggtaaag
    14101 gtggctctga ctttgatcca aaaggaaaat cagactcaga agtaatgcgt ttctgccaaa
    14161 gttttatgac tgaactacaa aaacatatcg gtccagatac agatgttcct gctggtgata
    14221 ttggtgttgg tggtcgtgaa attggctact tattcggtca atacaaacgt cttcgcggtg
    14281 cgtatgatgc cggtacaatt acaggtaaag gcctttctta cggcggaagt ttagctcgta
    14341 cagaagctac aggatacggt cttgtttatt tcaccgttga aatgttagaa gcagccggtg
    14401 aaaccattcg cggcaaaaaa atcgtcgttt ctggttcagg taacgttgcg atttatgcaa
    14461 tcgaaaaagc acacgaattg ggcgctaaag tagttgcatg tagcgattct gctggttttg
    14521 tttatgacaa agaaggtatc aaagttgaaa cagtaaaaca attaaaagaa gtagaacgta
    14581 aacgtattag cgaatacaca accattcatc catctgcaga atattacgca ggcggcgacg
    14641 tatggtccgt tccatgtgat atcgcactac catgtgcaac tcaaaatgaa atcaacgctg
    14701 accaagctcg tgcccttgta aaaaatggtg ttatcgctgt tgcagaaggc gcaaacatgc
    14761 cttctactct tgatgcagtg gatatttacc acgaaaataa agttctattc ggtcctgcaa
    14821 aagctgccaa tgctggtggt gttgccgtat cagcacttga aatggcacaa aacagcacac
    14881 gtatgagctg gactttccaa acagtcgacg aacatttaca aaacatcatg aaagatattt
    14941 ataaaaattc aagcaatgct gcaagcgagt acggcgcacc tggtaaccta gttatcggcg
    15001 caaatatcgc cggattcctc aaagtagcag acacaatgat ttctcaaggt attatttaat
    15061 tcaaaaagcc cttctttcta tccgaaagaa gggctttttt gttatctcat taattttcgt
    15121 aaaataaagg aaagtccgaa ccatagaatc acactaataa aaatcgtcac aatccaacca
    15181 aacgtattat gttctaaagg aagtggcatg ttcattccaa agaagcccgt aataatagta
    15241 ggaaccgtca ataaaatgga tagcgccgtt aaaattttca tcgtatcatt caaattattg
    15301 ttcaaaatat tattatatgt acctgacaat tgctgtaaga tttgagagct cagccccgtc
    15361 atttccacca gttgcctcgc ttcaattaaa gcatcttcaa attgttcctt ttccacttca
    15421 ttaagctcac gataaatcag atgggctttc atttgctcca gaagcgccgc attttgctta
    15481 gatgccgaaa caaaataaac aatcccagtt tccaaatcag ataatgacaa taaatttttc
    15541 ttcgtcgttt taattttcaa tttgtcatta atcgttcttc tatccgtatc catttcttcc
    15601 acatatggaa aaaaagcatc cataataaaa tacaaactac taaataaaaa ttgaaaaata
    15661 gttacgtcat ctgattcttt taaataacgc ttcatttttc gtgtaatata ttgattgtca
    15721 ttatttgtaa ttgttatcaa ttgcttatct tttattataa aaaccattgg tattgtctca
    15781 taatggttat ccattttcct ttgatcaggc acattaaaca caatgacaaa agtattggac
    15841 ttctgatcat attcaaaatg cgcacgttca tttctatcaa tcgaataggc gattacttca
    15901 tcatcaatat gatatttttc gtaaaaatcc gctagattat ctgtactatc tgtatcaata
    15961 ttaatccaat tatatttgcc gtttccaaaa attgtttgaa tggacatttt ttcatcctac
    16021 tttccatgag gtcataaaaa aagagagtct cattttcaga gcatctctat ttctacataa
    16081 ttatagcaca gaatctggga aattct
//
LOCUS       DASEAA010000053        16057 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.053, whole genome shotgun sequence.
ACCESSION   DASEAA010000053 DASEAA010000000
VERSION     DASEAA010000053.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 16057)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 16057)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..16057
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.053"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1020
                     /locus_tag="U0342_001391"
     CDS             <1..1020
                     /locus_tag="U0342_001391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldehyde reductase"
                     /protein_id="HEM2422739.1"
                     /translation="NVLVTGGTGFLGMHIIFQLLQQGYQVKTTVRSLKSKEKVIEVLQ
                     NNGITDFTQLSFVELDLSKDEGWKEAMLDCKYVLSVASPVFFGKFKNEEELIRPAIEG
                     ITRILQAAKEAKVKRVVMTSNFGAIGFSNADKNSITTEAYWTDELAKGLSAYEKSKLI
                     AEKEAWKFMENETELEFATINPVAIFGPSQSSHVSGSFDLLKNLLNGSMKRIINIPLN
                     VVDARDVADLHIRAMITPEANGERFIASADGEISMADIAHLLQRERPELVSKMPKKTL
                     PNAAIRAAAIFSKHAKEGELMINMNRQISNSKARDLLGWQPISTKEEAVLAAVDSLAK
                     YGLLD"
     gene            1109..2266
                     /locus_tag="U0342_001392"
     CDS             1109..2266
                     /locus_tag="U0342_001392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-independent coproporphyrinogen III
                     oxidase"
                     /protein_id="HEM2422740.1"
                     /translation="MINTNQSSKESSAVYIHIPFCEHICYYCDFNKVFLEGQPVDEYV
                     DLLIKEMELTAAKGPIAPVDTVFVGGGTPTTLNEAQIARLCTAIHNILPLKKDIEFSF
                     EANPGDLSLSKLQAMQDHGVNRISMGVQSFNNELLKKIGRIHTVKDVYQSVENMRKIG
                     FENVSIDLIFSLPGQTEADFQDTLKQALDLDLPHYSAYSLIIEPKTIFYNLMQKGKLF
                     LPGQDAEANMYDLLLNEMEKHGRKQYEISNFAKEGFQSKHNITYWSNEHYYGFGAGAH
                     GYVGNTRYSNFGPIKKYMEPLQKNILPTFQQKELTLKEKMEEEMFLGLRKVDGVDKKH
                     FKQKFGQDLDATFANAIQKTTAKGWLENNEENVALTRSGRFLGNNVFQEFL"
     gene            2413..3450
                     /gene="hrcA"
                     /locus_tag="U0342_001393"
     CDS             2413..3450
                     /gene="hrcA"
                     /locus_tag="U0342_001393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heat-inducible transcriptional repressor HrcA"
                     /protein_id="HEM2422741.1"
                     /translation="MLTERQLLIFRAIIDHFTWTIQPVGSKNLLKEKGLPYSSATIRN
                     EMGVLEEYGFIEKTHSSSGRVPSEKGYRFYVDYLLQPKKLDKSDRQMIRSFFSENYYE
                     MEGLIQNSALMLSDLTNYTSILLGPEATKNHLSGFRFVPINNFQAMLILITDQGHVDN
                     HLVTIPEGTTLSDIERMVNILNERLVGLSLDDLKVQIPMEVKELLGKHVRNYESFMHV
                     FSDSFAQASQQKVYFGGKTNILNQPEFHDINKVREMLHLMEEEQDVYELFRDIPDGLQ
                     VKIGRENNNSLMEDCSIITATYNIAGERVGGIVLLGPTRMEYSRMMGLVDVMSRDLTD
                     VLTKLYRDNQN"
     gene            3492..4067
                     /gene="grpE"
                     /locus_tag="U0342_001394"
     CDS             3492..4067
                     /gene="grpE"
                     /locus_tag="U0342_001394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide exchange factor GrpE"
                     /protein_id="HEM2422742.1"
                     /translation="MSEKKNKKERLADEIEQEELNILDETEETVEEEAAADTLTEEQA
                     KILELENKLDEVENRYLRMQADFENVKKRHIADRDASQKYRSQSLAQDLLPALDSFEK
                     ALATTSDQEEVKQILKGMEMVYNQILVAFEKEGIEVIPAVGEQFDPNFHQAVMQDSDE
                     NAGSNEITAELQKGYKLKDRVIRPSMVKVNQ"
     gene            4101..5942
                     /gene="dnaK"
                     /locus_tag="U0342_001395"
     CDS             4101..5942
                     /gene="dnaK"
                     /locus_tag="U0342_001395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaK"
                     /protein_id="HEM2422743.1"
                     /translation="MSKIIGIDLGTTNSAVAVLEGGEAKIIPNPEGARTTPSVVGFKN
                     GERQVGEVAKRAAITNPNTISSIKRHMGTNYKETIEGKDYSPQEISAIILQYLKSYAE
                     DYLGETVDKAVITVPAYFNDAQRQATKDAGKIAGLEVERIINEPTAAALAYGMDKTET
                     DQTILVFDLGGGTFDVSILELGDGVFEVHSTAGDNELGGDDFDKKIIDYLVAEFKKDN
                     GIDLSQDKMALQRLKDAAEKAKKDLSGVTSTQISLPFITAGEAGPLHLEVTLTRAKFD
                     ELTHDLVERTIAPTRQALKDANLSASDIDQVILVGGSTRIPAVQETIKKELGKEPHKG
                     VNPDEVVAMGAAIQGGVITGDVKDVVLLDVTPLSLGIETMGGVMTTLIERNTTIPTSK
                     SQTFSTAADNQPAVDIHVLQGERPMAKDNKTLGRFQLADIPPAPRGIPQIEVSFDIDK
                     NGIVTVRAKDLGTGKEQNIVIKSSSGLTDEEIEKMVQDAEANAEEDKKNKENAELRNN
                     ADQLVFTVDKTLKELEGKVEEEEVKKAEAARDELQEALKGEDFEAIKEKTESLNEIVQ
                     NLSVKLYEQAAAEQQAAGGAEGQEAPQNDDVVDAEFEEVNDDDKENK"
     gene            6084..7214
                     /gene="dnaJ"
                     /locus_tag="U0342_001396"
     CDS             6084..7214
                     /gene="dnaJ"
                     /locus_tag="U0342_001396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molecular chaperone DnaJ"
                     /protein_id="HEM2422744.1"
                     /translation="MAKRDYYEVLGVSKSASADEIKKAYRKLSKQYHPDINKEAGADE
                     KFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGAGGGFSGGGFSGFEDIFDTFFG
                     GGGRQQDPNAPRQGSDLQYTMRLKFKEAIFGKDAEIEIPREENCDTCHGSGAKPGTTP
                     EKCSHCGGKGSINVEQNTPFGRVVNKRTCQYCNGTGKEIKEKCPTCHGKGRVTKTKKI
                     KVKVPAGVNDGQQMRVSGEGEAGINGGPNGDLYVVFVVIPDEFFEREADDIYVEVPIT
                     FVQATLGDEIDVPTVHGKVRLKIPSGTQTGTTFRLRGKGVPHLRGNGTGDQHVIVKVI
                     VPKKLDDKQKEILREFASTTGDKVDEQTSGFFDKMKRAFKGD"
     gene            7286..8230
                     /gene="prmA"
                     /locus_tag="U0342_001397"
     CDS             7286..8230
                     /gene="prmA"
                     /locus_tag="U0342_001397"
                     /EC_number="2.1.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11 methyltransferase"
                     /protein_id="HEM2422745.1"
                     /translation="MEWSEVEVHTTNEAVEPVANVLTEFGAAGVSIEDVADFLRERED
                     KFGEIYALRREDYPEDGVIIKAYFLKTTEFVEQIPEIEQTLKNLSTFDIPLGNFQFVV
                     NDVDDEEWATAWKKYYHPVQITDRITIVPSWESYTPSANEIIIELDPGMAFGTGTHPT
                     TQLCIRALSDYLQPGDEVIDVGTGSGVLSIASAKLGAKSILATDLDEIATRAAEENIT
                     LNKTEHIITVKQNNLLQDINKTDVDIVVANILAEVILLFPEDVYRALKPGGIFIASGI
                     IEDKAKVVEEALKKAGLVIEKMEQQGDWVAIISKRGVE"
     gene            8231..8998
                     /locus_tag="U0342_001398"
     CDS             8231..8998
                     /locus_tag="U0342_001398"
                     /EC_number="2.1.1.193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (uracil(1498)-N(3))-methyltransferase"
                     /protein_id="HEM2422746.1"
                     /translation="MQRYFVTNELENDNETLSITGENFHHITRVMRMKESDQVFIVFP
                     SKKTCIAAITAINDDEVFLNLVKWLEEDTELPIEITIASGLPKGDKLELIIQKSTELG
                     AHKFIPYKAERSVVKWDDKKVIKKIERLQKIAQEAAEQSHRTIIPEVHYAASFKELMF
                     DHVHYDFVIAAYEESAREGEDSALANLFQTMKPGQSVLCVFGPEGGISEKELMQLQEV
                     NAKLAGLGPRILRTETAPLYCLSAASFYFDLYKNKKE"
     gene            9196..9369
                     /locus_tag="U0342_001399"
     CDS             9196..9369
                     /locus_tag="U0342_001399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016998564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S21"
                     /protein_id="HEM2422747.1"
                     /translation="MSKTVVRKNESLEDALRRFKRTVSKSGTLQESRKREFYEKPSVK
                     RKKKSEAARKRKF"
     gene            9389..9835
                     /locus_tag="U0342_001400"
     CDS             9389..9835
                     /locus_tag="U0342_001400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GatB/YqeY domain-containing protein"
                     /protein_id="HEM2422748.1"
                     /translation="MTLLDKLNEDMKQAMRDKEKEKLSVIRMLKAALQNEAIHQGVKD
                     LTPDDEVTVISRELKQRRDSLAEFDKAGRNDLSDKVRSEIVIVEDYAPKQLTPEELEN
                     IVKATIEEVGASSKADFGKVMSAIMPKVKGKADGGAVNQFVKKYLS"
     gene            10023..10982
                     /locus_tag="U0342_001401"
     CDS             10023..10982
                     /locus_tag="U0342_001401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhoH family protein"
                     /protein_id="HEM2422749.1"
                     /translation="MLNEFNEVVELSDDTNIQDLFGNNNKNIELLEELLQVKIITRGE
                     SLSITGEEEPVQHTTAVLNELILTVKRGIHIDGRDIAQAVKMQRNGTLIYFHTLFEEE
                     ITKNAKGMPIRPKTFGQRTYIQMIKKHDIVFGVGPAGTGKTYLAVVMAVDAWKKGNVS
                     KIILTRPAVEAGESLGFLPGDLKEKVDPYLRPVYDALYDIFGTEHTTRLMDRGVIEIA
                     PLAYMRGRTLDHAFVILDEAQNTTIAQMKMFLTRLGYDSKMIVNGDMTQIDLPKGATS
                     GLVNAEQVLKDVKDIGFVYFEHHDVVRHPLVAEIIKAYEGKQN"
     gene            10998..13154
                     /gene="pgpH"
                     /locus_tag="U0342_001402"
     CDS             10998..13154
                     /gene="pgpH"
                     /locus_tag="U0342_001402"
                     /EC_number="3.1.4.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP phosphodiesterase PgpH"
                     /protein_id="HEM2422750.1"
                     /translation="MKLAKKWRDWYIESGKKYLFPLLLVCFAVVAYFLVCQMTKPESY
                     NVKLFQVAEKTIRSPQTVEDTEKTKEERTKASDAVEDVYVYNRETGQNRVALIQSLFA
                     YVNEVNAEAQEKDTKNKEKAKKENKPAPAPTSTEDKLKNLKDKLSSNVSEKITSNISD
                     EVFTTLIEAKSKDFNVMEDVVTTEVEKSMENKIRDENLNSVKIRARDDIELSAIPAYY
                     KNVSKALVSYAIVPNEVYDEEQTDARRKEAAQSVVPVKILQGQVIVQEGQIVDRETYR
                     QLKMLHLLDQKMPVKQYAGFAIFIIALAAILFLYTKKQTQPKAKKMQTMLIFSSVYLV
                     SLFMLLIILFLETQNIANIAFLFPAAFAPMILKILLNEKYAFLSVIFIAVTSLLTFQN
                     DATSGITIFILLSGATSVVVLRDYSRRSAIMLSGFMVGLINMVYVLLLLLINNSTLLQ
                     VSTLMAIGYAFLGGFGAFILGVGVIPLFETIFGLLTTSRLVELANPNHPLLKKILMKA
                     PGTYHHSMMVANLAEACADKIGANSLLVRVGCFYHDIGKTLRPPYFVENQLQGINPHD
                     RLTPEQSRDIILSHTKDGAEILKENHMPQPIIDIALQHHGTTLLKYFYFKAKETNPDV
                     KEADYRYSGPKPQTKEIAIINISDSVEAAVRSSTEPTMAKITEIIDGIIKDRFLDGQF
                     TECDITIQEIKIIRDTLIATLNGIYHQRIQYPDDKD"
     gene            13171..13656
                     /gene="ybeY"
                     /locus_tag="U0342_001403"
     CDS             13171..13656
                     /gene="ybeY"
                     /locus_tag="U0342_001403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA maturation RNase YbeY"
                     /protein_id="HEM2422751.1"
                     /translation="MTVLEIDLLDETKNLLDEDKQLVENILQFAAEYLKIEQGTELSL
                     TFTTNEGIREINREYRDKDQATDVISFALEEMGDGETEIDWGEFDLETPRMLGDIIIS
                     TEKAEEQAKDYGHTKARELGFLAVHGLLHLLGYDHMEPDEEKIMFGLQKEVLDAYGLE
                     R"
     gene            13634..14029
                     /locus_tag="U0342_001404"
     CDS             13634..14029
                     /locus_tag="U0342_001404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family protein"
                     /protein_id="HEM2422752.1"
                     /translation="MLMDLKDRKYKRSKNYAESFHHAFTGLKTAFLEERNMRFHTFAA
                     LAVVICGFFFHVTKSEWILLILSIFGVLTLEMVNTAIERAVDVATEQYIDEAKKAKDV
                     AAGAVLLAAIVASFIGLIIFIPYFCQMFL"
     gene            14054..14449
                     /locus_tag="U0342_001405"
     CDS             14054..14449
                     /locus_tag="U0342_001405"
                     /EC_number="3.5.4.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cytidine deaminase"
                     /protein_id="HEM2422753.1"
                     /translation="MKENNFISLAKQAREFAYVPYSKFPVGAALVTKDDEVVLGCNIE
                     NASFGLTNCAERTAIFKAVSEGKRDFKQLVVVADTDGPVSPCGACRQVISEFCAPDMP
                     VILTNLTGKTATVTVKELLPGAFTSEDML"
     gene            14446..15351
                     /gene="era"
                     /locus_tag="U0342_001406"
     CDS             14446..15351
                     /gene="era"
                     /locus_tag="U0342_001406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464987.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTPase Era"
                     /protein_id="HEM2422754.1"
                     /translation="MSEPFKSGFVAIVGRPNVGKSTLLNHIIGQKIAIMSDKAQTTRN
                     KVQGVYTTDESQIIFIDTPGIHKPKHKLGDFMVKIALNTFQEVDLIYFVIDASTGFGR
                     GDEFIIEKLKNVQTPVFLLINKIDLIAPEDLFKLIEQYRDLMDFDEIIPISALQGNNV
                     PNLLEQTNANLEIGPMYYPKDQITDHPERFIISELIREQVLQLTREEVPHSVAVVIEG
                     IEKNPKTEKLTINATIIVERSTQKGIIIGKQGQMLKQIGMRARKEIERLLGSKVFLEI
                     WVKVQKNWRDKEHYLQDYGFDREEY"
     gene            complement(15398..16027)
                     /locus_tag="U0342_001407"
     CDS             complement(15398..16027)
                     /locus_tag="U0342_001407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464986.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4352 domain-containing protein"
                     /protein_id="HEM2422755.1"
                     /translation="MGMLLILLVSLFILTFIGVVVGIILLIVRKEKWAGIIVAGLSVG
                     IGFLVLAAGLNITTIKLFEGFNNPLSIHNYNSSNEPFTNDYAEDYDEDYYDDYIDVSY
                     GESVEIENNSTVTIYKPELTQMKEGYDIYKVKVKYANTSSDPISFYSEDIALYDNADD
                     DYGQQITEEGFAGEIQPGETKELTLYYEVYNLGPYDVEYDNYSWTTNKE"
BASE COUNT         5662 a         2785 c         3225 g         4385 t
ORIGIN      
        1 aacgtattag taacaggcgg aactggattt ttaggaatgc atattatctt tcaattattg
       61 caacaaggct atcaagtcaa aacaaccgta cgctctttaa aaagcaaaga aaaagtaata
      121 gaagtactgc aaaataatgg aataacggat tttacgcaat tatcctttgt cgaacttgat
      181 ttatccaaag atgaaggatg gaaagaagca atgctcgatt gtaaatatgt gctaagtgtc
      241 gcatctccag tatttttcgg taaatttaaa aatgaagaag aattaatacg cccagcaata
      301 gaaggtatta caagaatttt acaggccgca aaagaggcaa aagtaaaacg agtagttatg
      361 acttcgaatt ttggcgctat tggttttagc aacgcagata aaaatagcat tacaacagaa
      421 gcatattgga ccgatgaact cgctaagggt ttgtcagcat atgaaaaatc taaactaatt
      481 gcagaaaaag aagcttggaa attcatggaa aatgaaacag aattggaatt tgctaccatc
      541 aatccggttg ccatttttgg tccatcacaa agcagtcatg tctccggaag ctttgactta
      601 ttaaaaaatc tgttaaatgg ttctatgaaa cgtatcataa atattccgtt aaacgtagta
      661 gatgcacgag atgttgccga tttacatatt cgcgcaatga ttactcctga agcaaacgga
      721 gaacgtttta ttgcttcagc tgacggagaa attagtatgg cagatatcgc acatttgctt
      781 caacgagagc gtcctgaact agtgagtaaa atgccgaaaa aaacattgcc aaatgccgct
      841 ataagagcag ctgctatatt tagtaaacac gccaaagaag gcgagttgat gattaatatg
      901 aatcggcaaa taagcaattc aaaagcgaga gatcttttag gatggcagcc gatttcgaca
      961 aaagaagaag ccgttcttgc tgcagtggat agtttggcaa agtatggttt attagattaa
     1021 aagcgaatcc tgcaccaaag cactggaaaa tatgttaaac tgactaatgg acaacgaagc
     1081 aaattttaag tgcaaggaat tgataaaaat gataaatacg aaccaatcga gtaaggaaag
     1141 ttccgcggta tatatccata ttccgttttg cgaacatatt tgctattact gcgattttaa
     1201 taaagtattc ttagaaggac aaccggtcga cgaatacgta gatttactaa ttaaagaaat
     1261 ggaattaact gctgcaaaag gacctattgc gccagtcgac actgtatttg ttggtggggg
     1321 aacgcctaca accctgaacg aagcgcaaat tgcgagactt tgcacagcca tccataacat
     1381 tctacctcta aaaaaagata tcgaattttc ctttgaagcc aacccaggag atctttcgct
     1441 atctaaatta caagccatgc aagatcatgg cgttaatcgt atcagtatgg gagttcaaag
     1501 cttcaacaat gaacttctca aaaaaattgg gcgcattcat actgtaaaag atgtttatca
     1561 atctgtggaa aatatgcgca aaatcggatt tgaaaatgta agcattgatt taatctttag
     1621 cttgcctggt caaacagaag cagatttcca agatacatta aaacaagcgc ttgaccttga
     1681 tttaccgcat tactccgcct attcattaat catcgaacca aaaacgattt tttataacct
     1741 tatgcaaaaa ggaaagcttt tcttacctgg tcaagatgcc gaggcaaata tgtacgattt
     1801 acttctcaac gaaatggaaa agcacggtcg taaacaatat gaaattagta attttgccaa
     1861 agaaggattt cagagtaaac acaatatcac ttattggagc aatgaacatt actacggatt
     1921 tggcgccgga gcacatggct atgttggcaa tacacgttat agtaatttcg gaccaatcaa
     1981 aaaatacatg gaaccactcc aaaaaaatat actcccaaca ttccaacaaa aagagcttac
     2041 attaaaagaa aaaatggaag aagaaatgtt tttagggctt agaaaagtgg acggcgtaga
     2101 taaaaaacat ttcaaacaaa aattcggcca agatttagat gcaacatttg cgaatgctat
     2161 tcaaaaaaca accgcaaaag gctggctcga aaataacgaa gaaaatgtgg cacttacaag
     2221 aagtggaaga tttttaggaa ataatgtttt tcaagaattt ctctaaaacc gcactatttg
     2281 accttttttg accaaacaat ccaactttag tctgaaatcg agtgttttcg gttgactaag
     2341 gtggaattgt ttggtaaatt tatacttgta tttagcactt gacgttatgg agtgctaaaa
     2401 gaggtgattg ctatgttaac agaaagacaa cttttgattt ttcgtgccat catcgatcat
     2461 ttcacttgga ctattcagcc agttggatca aagaatttgc tgaaagaaaa aggtttgcct
     2521 tatagttccg cgactatccg taatgaaatg ggcgttctcg aagaatacgg ttttattgaa
     2581 aagacgcatt cctcatcggg acgagttcca tcagagaaag gatatcgctt ctatgtcgat
     2641 tatttactcc agcccaaaaa gctagataaa tccgacaggc aaatgattcg ttccttcttt
     2701 tcagagaact actacgaaat ggaaggactt atccaaaatt cagcattaat gttatccgat
     2761 ttaaccaatt acacgtccat tttgcttggt cctgaagcga cgaaaaatca tttaagtggc
     2821 tttagatttg taccaataaa taattttcaa gcaatgctca tattaattac cgatcaaggg
     2881 catgttgata accatttggt gacaatacca gaaggcacaa cgctctccga tattgaacgt
     2941 atggtcaaca ttctaaatga acggttagta ggactttcgc ttgatgattt aaaagtacaa
     3001 atacccatgg aagtaaagga attacttggg aagcatgtta gaaattacga aagctttatg
     3061 catgtgtttt ccgattcttt tgctcaagca agtcaacaaa aagtgtattt tggcggaaaa
     3121 acgaatattt taaatcaacc ggaatttcat gacattaata aagtccgtga gatgcttcat
     3181 ttgatggaag aagaacaaga tgtgtatgaa ttgtttaggg atattcccga tggtcttcaa
     3241 gtgaaaattg gccgagaaaa caataatagt ctaatggaag attgtagtat cattacagca
     3301 acatataata ttgctggcga acgcgttggc ggtattgtac tcctaggacc cacaagaatg
     3361 gaatatagca gaatgatggg actcgttgat gtgatgagcc gagatttaac cgatgtgtta
     3421 accaaacttt atcgtgataa ccaaaattag gaaggctgaa aaagcacacg ttttttcagg
     3481 aggtggctaa agtgtctgag aaaaagaaca aaaaagaaag actagctgat gaaatcgaac
     3541 aagaagaatt aaacattcta gatgaaacag aagaaactgt tgaagaagag gctgcggctg
     3601 acactttaac agaagaacaa gcaaaaattt tagagcttga aaacaaactt gatgaagtag
     3661 aaaatcgcta ccttcgcatg caagcggact tcgaaaatgt gaagaaaaga catatcgcag
     3721 accgtgatgc cagtcagaaa tatcgttcgc agagcctagc gcaagattta cttcccgcac
     3781 tagacagttt tgaaaaagca cttgcaacga cttctgatca ggaagaagtg aaacaaattt
     3841 taaaaggaat ggaaatggta tacaaccaaa tccttgttgc ttttgaaaaa gaaggtattg
     3901 aagtcattcc agctgtcggc gaacaatttg acccgaactt ccatcaagcc gtaatgcaag
     3961 atagtgatga aaatgcagga agcaatgaaa tcactgcgga acttcaaaaa ggttataaac
     4021 ttaaagaccg ggttatacgc ccatctatgg taaaagtaaa tcaataaaaa ataattactg
     4081 aataacagga ggaaataaca atgagcaaaa ttatcggaat tgacttagga acaacaaact
     4141 ctgcagtagc agtattagaa ggcggagaag caaaaatcat ccctaaccca gaaggcgcac
     4201 gtacaacacc ttctgtcgtt ggtttcaaaa atggcgaacg ccaagttggt gaagtagcga
     4261 aacgtgctgc tattacaaac ccaaatacaa ttagttctat taaacgtcac atgggtacta
     4321 actataaaga aacaatcgaa ggaaaagatt actcaccaca agaaatcagt gcaatcattt
     4381 tacaatatct aaaaagctac gcagaagact atcttggtga aactgtagat aaagctgtta
     4441 ttacagttcc agcttacttc aacgatgcgc aacgtcaagc aacaaaagat gctggtaaaa
     4501 tcgctggtct tgaagtggaa cgtattatta acgaaccaac agcagcagct cttgcttacg
     4561 gtatggataa aacagaaaca gaccaaacaa tcctagtatt tgaccttggt ggtggtacat
     4621 ttgacgtatc tatccttgaa ttaggtgacg gcgtattcga agtacattct actgccggcg
     4681 acaacgaatt aggtggagat gacttcgata aaaaaatcat cgactattta gtagcagaat
     4741 tcaaaaaaga taatggtatt gacttaagcc aagataaaat ggcgcttcaa cgtttgaaag
     4801 atgctgctga aaaagcgaaa aaagatcttt ctggcgtaac aagcacacaa atctccttac
     4861 catttatcac agctggagaa gctggtccac ttcacttaga agtaaccctt actcgtgcta
     4921 aatttgatga attaacacat gacttagttg aacgtactat tgcgccaact cgtcaagcat
     4981 taaaagatgc aaacttgtct gcaagcgata ttgaccaagt aattctagtt ggtggatcta
     5041 ctcgtattcc tgcagttcaa gaaacaatca aaaaagaatt aggcaaagaa cctcataaag
     5101 gtgtaaaccc agatgaagtt gtagcaatgg gtgctgcaat tcaaggtggc gtaatcactg
     5161 gtgatgtaaa agacgttgta ctacttgacg taactccatt atcccttggt attgaaacaa
     5221 tgggtggcgt tatgactaca cttatcgaac gtaatacaac tatcccaaca tctaaatcac
     5281 aaactttctc tacagcagct gacaaccaac cagccgtaga tatccatgta cttcaaggtg
     5341 aacgtccaat ggcaaaagac aacaaaacat taggtcgttt ccaattagcg gatattccac
     5401 cagctccacg cggaattcca caaatcgaag tatcttttga tatcgacaaa aatggtatcg
     5461 taacagttcg tgcaaaagat cttggaactg gtaaagaaca aaacatcgtt atcaaatctt
     5521 cttcaggttt aacagacgaa gaaattgaga aaatggttca agatgctgaa gctaacgctg
     5581 aagaagataa aaagaacaaa gaaaacgctg aacttcgcaa caatgcagac caattagtat
     5641 tcactgtaga taaaactttg aaagagttag aaggcaaagt ggaagaagaa gaagtgaaaa
     5701 aagcagaagc agctcgcgat gaactacaag aagcgcttaa aggtgaagat tttgaagcta
     5761 tcaaagaaaa aacagaaagc ttaaacgaaa tcgttcaaaa cctatctgtt aaattatacg
     5821 aacaagctgc agcagaacaa caagcagctg gcggtgcaga aggtcaagag gctcctcaaa
     5881 atgacgacgt agtagacgct gaatttgaag aagtaaatga cgacgacaaa gaaaacaaat
     5941 aatctttttt aaagtaaaga taatgagtca aagtctactg tggctttgac tttttatctg
     6001 aaataaagtt tttacaacat ctctttcaaa tgttacaata cgttaggact ataaaaatct
     6061 atcatggaca ggagtgatgg cggatggcaa aacgagatta ctatgaagtg cttggtgttt
     6121 ccaaaagcgc ctcagcggac gaaataaaaa aagcttaccg gaaactgtcc aaacagtatc
     6181 atccggacat aaataaagaa gcaggcgctg atgaaaaatt taaagaaata tcagaggcat
     6241 atgaagcatt aagtgaccca caaaaacgtg cgcaatatga tcaatatgga cacgtagatc
     6301 caaaccaagg cttcggcggc ggtgctggtg gcggatttag cggtggagga ttctctggat
     6361 ttgaagatat ctttgacaca ttctttggtg gcggtggacg tcaacaagat ccaaatgccc
     6421 caagacaagg tagcgattta caatatacta tgcgtcttaa attcaaagaa gctatttttg
     6481 gtaaagatgc agaaatcgaa attcctcgcg aggaaaactg tgacacatgt catggttccg
     6541 gtgcaaaacc agggacaaca cctgaaaaat gtagccattg tggtggtaaa ggttccatta
     6601 acgtggaaca aaatacccca tttggtcgtg tagttaacaa gcggacatgt caatactgta
     6661 atggtactgg taaagaaatc aaagaaaaat gcccaacttg tcacggtaaa ggccgtgtaa
     6721 ctaaaacgaa aaaaatcaaa gtgaaagttc cagctggcgt gaacgacggg caacaaatgc
     6781 gcgtatctgg tgaaggagaa gccggcatta acggcggacc taacggcgat ttatatgtgg
     6841 tatttgtcgt aattccagat gagtttttcg aacgcgaagc agatgatatt tacgtagaag
     6901 tcccaatcac attcgtacaa gctacattag gtgacgaaat tgatgttcca actgttcacg
     6961 gcaaagttcg tttgaaaatt ccaagtggta ctcaaacagg aacaactttc cgcttacgtg
     7021 gtaaaggtgt gccacatctt cgaggaaatg gaactggcga tcaacatgta atcgtcaaag
     7081 tcattgttcc gaaaaaacta gatgataaac aaaaagaaat cttgcgagaa tttgcttcca
     7141 ctactggaga caaagtagac gaacaaacat ccggattttt tgacaaaatg aaacgagctt
     7201 ttaaaggcga ttgatgaacg tagaggtcga tagttgtgcg agaagcaacc atcgaccttt
     7261 tctacataca aaaggagtgt taaaaatgga atggtcagaa gtagaagtcc atacaacaaa
     7321 cgaagctgta gaaccagtag ctaatgtttt gacagaattt ggtgcagcag gagtatccat
     7381 tgaagatgtt gctgattttt tacgtgaacg agaagacaaa tttggagaaa tatatgcact
     7441 aagacgagaa gattatccag aagacggcgt tattattaaa gcttacttct taaagacaac
     7501 agaatttgta gagcaaattc cagaaattga acaaacattg aagaatctgt ctacttttga
     7561 tattccgcta ggtaatttcc aatttgtcgt taatgatgtg gacgacgagg agtgggctac
     7621 cgcatggaag aagtattatc atccagttca aatcactgac aggatcacga ttgtaccaag
     7681 ttgggaatca tacaccccat ctgctaacga aataatcatt gagctagatc caggaatggc
     7741 ttttgggaca ggaacacatc cgacaactca gctatgtatc cgcgcactga gcgattattt
     7801 acaaccagga gatgaagtga ttgatgttgg gactggttct ggcgtcttaa gtattgccag
     7861 tgctaaatta ggtgcaaaat ctattttagc aacagacctc gacgaaatcg ccactcgtgc
     7921 agcagaagaa aatattactt taaataaaac tgaacacatt attactgtca aacaaaataa
     7981 tctacttcaa gatattaata aaacagacgt ggatattgtt gttgcgaaca ttttagcaga
     8041 agttattttg cttttccctg aggatgttta tagagcactc aaaccaggcg gaattttcat
     8101 tgcttccggg attattgaag acaaagcgaa agtagtcgaa gaagcactta aaaaggctgg
     8161 gcttgttatt gaaaaaatgg agcaacaagg ggactgggtt gcgattattt ccaaacgagg
     8221 agtggaataa atgcaacgtt attttgtaac aaatgagcta gagaatgata acgaaacact
     8281 atccattact ggagaaaact tccatcatat tactcgtgtt atgcgaatga aagaatccga
     8341 ccaagttttc attgtttttc ctagcaaaaa aacatgtatt gccgctatta cagctataaa
     8401 cgatgatgaa gtatttttaa atttagtgaa atggctagaa gaagataccg aattgcctat
     8461 agaaatcacc atcgcaagtg gtctaccaaa aggcgacaaa ctagaactca tcattcaaaa
     8521 aagtacagaa ctaggcgcac acaaatttat cccttataaa gcagaacgat ctgtggtgaa
     8581 atgggatgac aagaaagtca tcaaaaaaat cgagcgactt caaaaaattg cgcaagaagc
     8641 tgctgaacaa tcgcaccgga caatcattcc agaagttcat tatgctgcta gtttcaaaga
     8701 gttaatgttt gaccatgttc actatgactt tgttatcgca gcatatgaag agagcgccag
     8761 agaaggtgag gacagcgcgc ttgctaactt attccaaacc atgaagcctg gacagtctgt
     8821 tttatgtgtt tttgggcctg aaggaggcat tagcgaaaaa gagctaatgc aacttcaaga
     8881 agtaaatgca aaactcgcag gactcggccc gagaatatta agaacagaaa ccgcaccact
     8941 ctattgttta tccgctgctt ctttctattt tgatctttat aaaaacaaaa aagaataaca
     9001 tttcaaagtt ttatgcgaaa gttaacgatt tcatgttgac gatgcccgat gtttcgtata
     9061 taatttttaa tgagtgaatg cttatctgca ttacttcaga ataattcata atttattttc
     9121 cgttatgtcc tattctggaa cttaaatgaa ggatttaagt gagtgcatgt aagtgccgga
     9181 gggagggaaa gagagatgtc aaaaacagta gttcgtaaaa acgaatcgct tgaagatgct
     9241 cttcgtcgct ttaaacgtac tgtttccaaa agtggaactt tgcaagaatc cagaaagcgc
     9301 gaattttatg aaaaaccaag cgtaaaacgt aagaaaaaat ccgaagcagc aagaaaacgc
     9361 aaattctaat taaaaggcga tgatttcgtt gacactgctt gacaagttaa atgaagatat
     9421 gaaacaagcg atgcgcgata aagagaaaga aaaactttcc gttattcgta tgttaaaagc
     9481 agctttacaa aacgaagcaa ttcaccaagg tgtgaaagat cttactccgg atgatgaagt
     9541 aaccgtgatt tcccgcgaac tcaaacaacg cagagattct ctagcagagt ttgacaaagc
     9601 tggacgtaac gacctttctg ataaagtccg ttccgagatt gtcattgttg aggactacgc
     9661 gccaaaacaa ttgactcctg aagagcttga gaatattgtg aaagcaacta tcgaagaagt
     9721 tggcgcatct agtaaagctg atttcggcaa agtaatgtcc gcgattatgc ctaaagtaaa
     9781 aggtaaagct gacggtggtg ctgttaacca attcgtaaaa aaatatcttt cataaactaa
     9841 ttcaaactag ttttgaaaca ttaagaaaca ggattacttc ctattttgtg gaggaaatcc
     9901 tgttttttta tgccgatttt tacttgaatt gcgttgttgc tatcgcttcg tttttcaagc
     9961 aaggcaattt cgtgtataat ataactaatc aaggcactta taacaggtga aggggttagc
    10021 caatgctaaa tgaatttaat gaagtagtcg aattatctga tgacacaaat attcaagatt
    10081 tattcggcaa taataataag aatatcgaac ttttagaaga gttacttcaa gtgaaaatca
    10141 ttactcgggg agagtcacta tctattacag gcgaggaaga gcctgtacag catacgactg
    10201 ccgttttaaa tgaacttatt ttgacggtaa aacgaggtat tcatattgat ggtcgagata
    10261 tcgctcaagc ggtaaaaatg caaagaaacg gaacacttat ttactttcat accttatttg
    10321 aagaagaaat tacgaagaat gcaaaaggaa tgccaattag gccaaaaaca ttcggacaaa
    10381 gaacttatat tcaaatgatt aaaaaacatg acatcgtttt cggcgttggt ccagcaggta
    10441 ctggtaaaac ctatctagca gtagttatgg cagtagatgc atggaaaaaa ggaaatgtga
    10501 gcaaaatcat tttaacaaga cctgccgttg aagctggcga aagtttaggt tttttgcctg
    10561 gagatctaaa agaaaaagta gatccttatc tacgccctgt gtacgacgcg ttatatgaca
    10621 tttttggtac agagcataca acaaggttaa tggaccgagg cgtcattgaa atagctcctc
    10681 tggcttatat gcgtggccgt acacttgatc atgcctttgt cattttagac gaggcgcaga
    10741 atacgaccat tgcccaaatg aaaatgtttt taacacgact tggttatgac tccaaaatga
    10801 ttgtcaatgg agatatgaca caaattgact taccaaaagg tgcaactagc ggtcttgtca
    10861 atgcagaaca agttttaaaa gatgtaaaag atatcggttt tgtttacttt gaacatcatg
    10921 atgtagtcag acacccactc gttgctgaaa ttattaaagc ttatgaaggg aaacaaaatt
    10981 agagaggaga caaagatgtg aaactagcca agaaatggag agattggtac atcgaaagtg
    11041 gaaagaaata cctttttccg ctgctccttg tttgctttgc agttgtagct tattttctcg
    11101 tttgccaaat gacgaaaccg gaatcttaca atgttaaact attccaggtg gctgaaaaaa
    11161 caattcgttc acctcaaacg gtggaagata cagaaaaaac aaaagaagaa agaaccaaag
    11221 caagcgatgc tgtagaagat gtgtatgtct acaatcgcga aactggtcaa aaccgagtag
    11281 cacttatcca aagtttattt gcctatgtaa atgaagtaaa cgcagaagcg caagaaaaag
    11341 ataccaagaa taaagagaaa gcaaaaaaag agaataagcc tgctcctgcg ccaacatcaa
    11401 ctgaagataa attaaaaaac ttaaaagaca aattatctag taacgtatct gaaaaaataa
    11461 cttctaacat atctgacgaa gttttcacta ctttaatcga agcgaaaagt aaagatttta
    11521 atgtcatgga agacgtggtt acaacagaag ttgaaaaatc catggaaaat aaaatccgag
    11581 atgaaaactt gaattctgta aaaattagag ctcgtgatga tattgaactt tcagcgatac
    11641 ccgcttacta caaaaatgtc tcaaaagcct tagtttccta tgctatcgta ccgaatgaag
    11701 tttacgatga agagcagacc gatgcacgac gtaaagaagc tgcgcaatcc gttgttcctg
    11761 tgaaaatctt acaagggcaa gttattgttc aagaaggcca aattgtagat agagaaacat
    11821 atcgtcagct aaaaatgcta catttacttg atcaaaaaat gcctgtaaaa caatacgctg
    11881 gatttgcgat tttcattatt gctttagcag caattctatt cctttacacg aaaaaacaaa
    11941 cacaacctaa agcgaaaaaa atgcagacga tgcttatttt ttcttcggtt tatcttgttt
    12001 ctttgtttat gttattaatt attttatttt tagaaacgca aaatatcgcg aatattgctt
    12061 tcttattccc agccgccttt gccccgatga tactcaaaat tttactcaat gagaaatatg
    12121 cctttttaag cgtcattttt attgctgtaa ctagtttgtt aacatttcaa aatgatgcta
    12181 caagcggcat aactattttt attttattga gtggcgcgac gagtgttgtt gtgttacgcg
    12241 attatagtag acgttcggct attatgttgt ctgggtttat ggttggttta attaatatgg
    12301 tttatgtgtt acttttatta ttaataaata acagcacact gttgcaagtt tctacactaa
    12361 tggccattgg atatgccttt ttaggtggat ttggcgcatt tattctcgga gtaggagtta
    12421 ttccgttatt cgaaacgatt tttggattgt taacaacgag tcgtttggtc gaattagcta
    12481 atccaaacca tccattattg aagaaaatat taatgaaagc tcctggtacg tatcatcata
    12541 gtatgatggt agctaactta gcagaagcat gcgctgacaa aattggtgcc aatagtttac
    12601 ttgttcgtgt tggctgtttt tatcatgata taggaaaaac attaagacca ccttattttg
    12661 tggaaaatca attgcaagga ataaatccgc acgatagact gacaccagaa caaagtcgtg
    12721 atataattct ttcgcataca aaagacggag cagagatttt aaaagaaaat catatgccac
    12781 aaccaattat tgatatcgca ctccaacatc acgggacgac actgcttaaa tatttctatt
    12841 ttaaagcgaa agaaacaaat ccagatgtga aagaggcaga ttatcgttac agtggtccaa
    12901 agccacaaac gaaagaaatc gccattatca atatatcgga tagtgttgaa gcggcagttc
    12961 gttcttccac agagccaacc atggcaaaaa taacagaaat tattgacgga atcattaaag
    13021 atcgtttcct tgatgggcaa tttacagaat gtgatattac aatacaagaa attaaaatca
    13081 ttcgtgacac cttaatcgcc acattaaatg gaatatatca tcaacgaatt caatatcctg
    13141 atgacaaaga ttgaaatagg aggacaaaag atgacggtct tagaaattga tttactagac
    13201 gaaactaaga atttacttga tgaagataaa cagctagttg aaaatatttt acaatttgcg
    13261 gctgagtatt taaaaatcga acaagggaca gagctgtcac tcacctttac aacgaatgaa
    13321 ggtattcgtg agattaaccg agaatatcgg gataaagatc aagcaaccga tgttatttcg
    13381 ttcgcgctag aagaaatggg cgacggggaa acggagattg attggggcga atttgatctt
    13441 gaaacgcctc gtatgcttgg cgatataatt atttcgactg aaaaagcaga agagcaagcc
    13501 aaagattacg gacatacaaa agcaagagaa ttaggtttct tagcagttca tggattgctg
    13561 cacttgcttg ggtatgatca tatggagcct gacgaagaga aaatcatgtt tggcttacaa
    13621 aaagaagtgt tggatgctta tggacttgaa agatagaaaa tacaaacgta gtaaaaatta
    13681 tgcagaatct tttcatcatg cttttactgg actaaaaact gcttttttag aagaacgtaa
    13741 tatgagattt catactttcg cagcgcttgc tgttgtcatc tgtggctttt tctttcatgt
    13801 aactaaatct gagtggattt tattaatcct ttctattttt ggtgtgttaa cgctagagat
    13861 ggtgaacaca gcgattgaac gagcggtaga tgtggcgaca gaacaataca ttgatgaggc
    13921 gaaaaaagcg aaggatgtag ctgccggagc ggtactgtta gcagcaattg tagcaagttt
    13981 tattggactg attatattca taccatactt ttgccagatg tttttataaa aagaagggat
    14041 tgtgacttgg taaatgaaag aaaataattt tatctcactc gctaaacaag caagagaatt
    14101 tgcgtatgtt ccttactcga aatttccagt aggagcagct cttgttacga aagatgacga
    14161 ggttgtactt ggctgtaata tcgagaatgc atcattcggt ttaacaaact gcgcagaacg
    14221 gacagctatt tttaaagctg tatcagaagg aaaacgagat tttaaacagt tagttgtcgt
    14281 agcggataca gacggtccag tttcgccgtg tggggcatgc agacaagtca tcagtgaatt
    14341 ttgtgcgcca gatatgccag taatattaac aaacttaaca gggaaaacag cgacggtaac
    14401 ggtgaaagaa cttttaccag gcgcattcac atcggaggat atgttatgag tgaaccattt
    14461 aaatcaggat ttgtagctat agttgggcgg cctaacgttg ggaaatcaac tttattaaat
    14521 cacatcattg gccaaaaaat tgccattatg agtgataaag ctcaaacaac aagaaataaa
    14581 gtacaaggtg tttatacaac agatgaatca caaattattt ttattgatac accaggtata
    14641 cataaaccaa agcataaatt aggcgatttc atggtgaaga ttgcgctaaa tacgttccaa
    14701 gaagtagact taatttattt cgtaatcgac gcatctaccg gatttggacg cggagatgaa
    14761 tttattattg aaaaacttaa aaacgtacaa acacctgttt ttcttttgat taataagatt
    14821 gatttaattg ctccagaaga tttattcaag ttaattgaac agtaccgcga tttgatggac
    14881 tttgatgaga ttattcctat ttcagcactt caaggaaata acgtgcctaa cttactagaa
    14941 caaacgaatg ctaacttaga aatcggacca atgtattatc caaaagatca aatcacggac
    15001 catcctgagc gtttcatcat ctcggagtta attcgtgaac aggttttaca attaacacga
    15061 gaagaagttc cacattctgt agcagtggtt attgaaggaa ttgaaaaaaa ccctaaaaca
    15121 gaaaaactta caatcaatgc tacaattatt gtagaaagaa gcacgcaaaa aggaattatt
    15181 attggtaaac aaggtcaaat gctaaaacaa attggtatgc gtgctagaaa agaaattgaa
    15241 cgcttactcg gctccaaagt cttcttagaa atttgggtaa aagttcaaaa aaactggcgc
    15301 gataaagagc attatttgca agattacggt ttcgaccgcg aagagtatta aaaaagcatc
    15361 tggcgcacaa ttgggtttgt gcgccagatg cttttaatta ttctttattt gtagtccagc
    15421 tatagttatc atattctaca tcatatggtc caaggttata cacttcatag taaagcgtta
    15481 attcttttgt ctcccctggt tgaatttctc cagcaaaacc ttcttccgta atttgttggc
    15541 cataatcatc gtctgcatta tcataaagcg caatgtcttc ggaatagaag cttattggat
    15601 cagaacttgt atttgcgtat ttcactttta ctttataaat atcatagcct tccttcattt
    15661 gggtcagctc aggtttataa atggtaactg tgctattgtt ttctatctca acagattctc
    15721 cgtaacttac gtctatgtag tcgtcatagt aatcttcatc atagtcttct gcataatcat
    15781 ttgtaaatgg ttcattgctc gaattgtaat tatgaataga aagtggatta ttaaatcctt
    15841 caaataattt aatcgttgtt atattaagtc cagctgctaa tactaaaaag ccgattccca
    15901 cggataatcc cgcaacaata atgcccgccc atttctcttt tcttacaata agcaaaataa
    15961 ttcccacaac aactcctatg aatgtgagta taaataagct gactaataat ataagtaaca
    16021 tacccaaagt aaaaaatcct ctctgactta ccgtttt
//
LOCUS       DASEAA010000054        15359 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.054, whole genome shotgun sequence.
ACCESSION   DASEAA010000054 DASEAA010000000
VERSION     DASEAA010000054.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15359)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15359)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15359
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.054"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(3..1601)
                     /locus_tag="U0342_001408"
     CDS             complement(3..1601)
                     /locus_tag="U0342_001408"
                     /EC_number="6.3.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CTP synthase"
                     /protein_id="HEM2422756.1"
                     /translation="MTKYIFVTGGVVSSIGKGITAASLGRLLKNRGLSVTIQKFDPYI
                     NVDPGTMSPYQHGEVYVTDDGAETDLDLGHYERFIDINLNKYSNVTTGKVYSEVIKKE
                     RRGDYLGGTVQVIPHITNELKDRVFRAARMTNSDIIITEIGGTVGDIESLPFLEAIRQ
                     IKSDVGAENVLYIHTTLIPYIKAAGEMKTKPTQHSVKELRSLGIQPNIIVVRTEQPVS
                     QEMKDKIALFCDIKASEVIESRDEETLYNVPLSLQKQKMDDIVLEHLQLEAPQAEMTD
                     WKNLVHRVKNLSKKVRIGLVGKYVSLQDAYLSVAEALRHAGYDHDAEIEIDWIDSEKV
                     TKENVAEIMKDVDGILVPGGFGDRAIEGKIAAIEYARVNKVPYFGICLGMQLATVEFA
                     RNVLGLEGAHSAEIEPETKHNIIDLLPEQKNIENMGGTLRLGLYPARIKQGTKAEAAY
                     GTTLVEERHRHRYEFNNEYREQMEEAGMIVSATSPDGRLVEVVELADHPWFVACQYHP
                     EFISRPNRPQSLFKDFVGAALNNK"
     gene            complement(1966..2502)
                     /locus_tag="U0342_001409"
     CDS             complement(1966..2502)
                     /locus_tag="U0342_001409"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit delta"
                     /protein_id="HEM2422757.1"
                     /translation="MDLKNLTQEERSELSLIDVAHFILEQRKETILFPELVKEIQAFL
                     GLKDAEIRERLVQFYTDMNIDGNFISLGNNTWGLRAWYPMDAIDEEVQTQTTPKKKRK
                     SDDDDDEDEEILDDDVDYDDEEIVEELGEEEISLADVLLDEDEDDDDHLPDGIEGDLA
                     TVEDDYTDGDYTEDPEDK"
     gene            complement(2868..4538)
                     /locus_tag="U0342_001410"
     CDS             complement(2868..4538)
                     /locus_tag="U0342_001410"
                     /EC_number="6.1.1.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arginine--tRNA ligase"
                     /protein_id="HEM2422758.1"
                     /translation="MNVMQENQIKLIEHIKQGVVQAVGLEEAEVPEILLEVPKDKKHG
                     DYSTNIAMQLARVAKKAPRQIAESIVPELKKDNKLIKEVEIAGPGFINFYLDNAYLTD
                     LVPVILTEDKKYGESDFGKGEKFQIEFVSANPTGDLHLGHARGAAIGDSLANIMKMAG
                     FDVSREYYINDAGNQINNLVLSAEARYFEALGLDSEFPEDGYRGADIISLGKDLAAKY
                     GDKYVHTSEEERRSVFRVDALAFETGKLRADLEEFRVSFDEWFSETSLYEENKVLPAL
                     ERLRENGYIYEQDGATWLRTTDFEDDKDRVLIKSDGSYTYFLPDIAYHLNKLERGFDV
                     LIDIWGADHHGYIPRMRAAIEALGYSPNQLEVEIIQLVHLFEDGVQVKMSKRTGKSVT
                     MRDLIEEVGLDATRYFFAMRSSDTHMNFDMSLAKSTSNDNPVYYVQYAHARISSILRS
                     GKEQGLEVTKDADMSLLQTEAEYDLLKVLGEFADVVAEAATKRAPHRIVRYLNDLASS
                     FHRFYNSNKVLDMDNLEVTKARLALIKTAQITLRNGLTLLGVSAPEKM"
     gene            complement(4535..4984)
                     /locus_tag="U0342_001411"
     CDS             complement(4535..4984)
                     /locus_tag="U0342_001411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1934 domain-containing protein"
                     /protein_id="HEM2422759.1"
                     /translation="MTANQMERKKVTIHITNVIRQMDAEEKSDMSVSGVFYRDKGNRY
                     LHYEEKQLAGTIRTVLKIADNELLLMRSGAVNMRMHFFRDNRRSTASVDSGAGKLQLE
                     SELVSMEELYENKPDVLSEVAFQYDLLSHGEYIGSYTVLMKIEEDAE"
     gene            complement(5062..5715)
                     /locus_tag="U0342_001412"
     CDS             complement(5062..5715)
                     /locus_tag="U0342_001412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-2 protease family protein"
                     /protein_id="HEM2422760.1"
                     /translation="MPSFLAYPLEMIPYVLVTLLIAFTIHEWAHALVALAFGDDTAKN
                     EGRLSLNPVVHIDLFGLLMILIAGFGWAKPTPVNRFKLKKRRLGSILVSLAGPVSNLL
                     LAMVGVGLYALFLNYSFFTYGSVAETFLMIFVQLNLVLFVFNLIPLPPLDGYQILVEF
                     LPMSTRSKLEPLERYAMLIFLVVALTPISEFTIQPIFNTVIPFVLNVILTIFGLTSF"
     gene            5750..5974
                     /locus_tag="U0342_001413"
     CDS             5750..5974
                     /locus_tag="U0342_001413"
                     /EC_number="5.3.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-oxalocrotonate tautomerase"
                     /protein_id="HEM2422761.1"
                     /translation="MCYNEKNVDRGEKMPFVTIQFLEGRTDDQKKALVSEVTEVVAKN
                     LKAPKENIHVILEEMKKTDYGVGGVRKSDI"
     gene            complement(6009..7331)
                     /locus_tag="U0342_001414"
     CDS             complement(6009..7331)
                     /locus_tag="U0342_001414"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2422762.1"
                     /translation="MSYLTEKLREEKVFKDPVHGYVHVSDKIIWDLIATKEFQRLRRI
                     HQLGTTSLTFHGAEHSRFNHSLGVYEIVRQIIDVTFANEPQLDPEERMVALCAALLHD
                     LGHGPFSHAFEKVFGTDHESYTQEIIIGDTEVNKILMRAGEEFPLKVAAIIKKNYPNQ
                     TLVKLISSQIDADRMDYLLRDAYYTGVSYGKFDLERILRVLRPSPDGNGVIVKYSGMH
                     AVEDYIMSRYQMYQQVYFHPVSRSGEVLLWKILERAKKLYCAGYEFQATPIQVLPFFL
                     NEVSLKDYIVLDDIVLMYYFSIWQEEEDPILSDLCSRFLNRRLLRYINYDPKEDAELY
                     AELKGLLEKADIDPSYYLVIDSSSDLPYDYYLPGVGSGKDPIKLLMGNGELRELSTES
                     PVVEAIGRERRTDIKLYYPLDFIESGHVEEAITERMIALIHAHSLKEK"
     gene            complement(7346..8182)
                     /locus_tag="U0342_001415"
     CDS             complement(7346..8182)
                     /locus_tag="U0342_001415"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoyl-[GcvH]:protein N-lipoyltransferase"
                     /protein_id="HEM2422763.1"
                     /translation="MNIEDTLLKQDVWRFIDNTTINPAFDAIQSFATDDTLCRSVGAR
                     MAPSTVRGWVHEKTVSLGIQDSKLPDIDKGIAFLQEQGYRVVVRNSGGLAVVLDSGVL
                     NLSMVLPDAERGIAIERGYETMFTLIKDMFVDCNEVIEAKEIEDSYCPGSYDLSIQGK
                     KFAGISQRRMAKGVAVQIYLAIDGDQTTRSELIRDFYTISGKAKQTKYTFPDVNPNVM
                     GSLSDLMKNDISLNGTLVRLFNSLRHYAGELVSGTLTSEELDLFPAYYERLIARNDKV
                     LT"
     gene            complement(8500..8700)
                     /locus_tag="U0342_001416"
     CDS             complement(8500..8700)
                     /locus_tag="U0342_001416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422764.1"
                     /translation="MNSFWKIFFTVILGFIALNIVLDIVGITLHFLFPVLILGGIGYL
                     LYRMWGNSPKRSSRDNEDRYNW"
     gene            complement(8723..9046)
                     /locus_tag="U0342_001417"
     CDS             complement(8723..9046)
                     /locus_tag="U0342_001417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HEM2422765.1"
                     /translation="MKKGLFGLLAAIFVLTMVVIEFSAPIGSAANTYYVTIKNDGKEV
                     TKSKFKGYSFRESCLDNQGNSHKVNFMSTTQLKKNKQYKIVVQDNELLVQAKEINSVP
                     LASSK"
     gene            complement(9200..10861)
                     /locus_tag="U0342_001418"
     CDS             complement(9200..10861)
                     /locus_tag="U0342_001418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2422766.1"
                     /translation="MHKTARKMVVALSLLCLLALTACQSGNKGENEKVTSDKKSKVVN
                     IMETSGIPNASPTLADNSVSFRVINQIFEGLYRLDKNGKPALALAASEPEEKDGGKTL
                     IFKIREDANWSNGDPVTAHDFEYAWKKVVDPKTAAAYGPQMEEIVKNATQILKGEMSP
                     DELGIKALDDKTLQIELENPVPIFKELLTTGTFFPQNQAFVEKQGDRYGTKSDTLISN
                     GPYKLENWNGTNMTWDYVKNPTYWDKKNVPTKKIHVTVVKDTNAALNLYNTNKLDRVE
                     LDGEFVKQYKDDKNFHKEATGRSVYMKMNQGKDGVKTDLANLNLRRGLAMAIDKTGMV
                     NTLLANGSKALNGDVPGDIMFDPETKEDFRKQNGDLLKFDQQEATNAWKQGLKEIGKT
                     ELTLTLTSGDTSLQRKQTEFIQNQLEENLPGLTIKLKNVTNQASFQADVTQDFELLLG
                     GWGGDYQDPLTYLNLFLTNSPGNHTGFSDAKYDELVLGAKGKLSADPEKRWQALLEAE
                     QILLKDNAVLIPLYQGGRAYLQKSNLKNYTTYPIGSENYKWIEKN"
     gene            complement(10996..11610)
                     /locus_tag="U0342_001419"
     CDS             complement(10996..11610)
                     /locus_tag="U0342_001419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HEM2422767.1"
                     /translation="MRKVGIFPSMIILFTVGISAVLYPLLPSEVAVHFGTDFSPDMFM
                     QKWLGLILIPFLMIMFTGTEYYGKEKVNQESLLEFEYCFRLLLVLLTIIQMSIIVYAL
                     GYDIPTGRFSLVTAGAFMFVVAAYIQYSKKLFKFLTMIGFKKIDAWSRNLLRKITTVT
                     LNIAGTICFILALFMRNDPSYLMLAMLMTMCVIVVGSGVYLNKK"
     gene            complement(11634..12266)
                     /locus_tag="U0342_001420"
     CDS             complement(11634..12266)
                     /locus_tag="U0342_001420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinamidase"
                     /protein_id="HEM2422768.1"
                     /translation="MKIAAFDIDAQKGFTPLCPDELPVSGGDKIVPELNFMASLASLR
                     IGSKDAHPQNAVWVVDSKDEMLAELEYPNADRTWVRHCEPGTKGFELLDGLPVVTDYD
                     YFIWKGMEPDIHPYGACYHDIVEQLSTGVLEYLREQKVDLVLVGGLAFDFCVKTTVIQ
                     LSRAGFSVLVYLPATRALSEQGFDETKEQLANTEKVQLIETREELVAYCQ"
     gene            complement(12267..12791)
                     /locus_tag="U0342_001421"
     CDS             complement(12267..12791)
                     /locus_tag="U0342_001421"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrofolate reductase"
                     /protein_id="HEM2422769.1"
                     /translation="MSEKQVALYIAVSLDGYIADENGSVEWLESIDSEGDAGYEAFFD
                     NVDTVVMGRTTYQQIFSLTDTFPYSKKDVYVFSNTKAGTKDEYADFVAGTVDTWLNNI
                     DGEKIWLVGGAKLVQQFLKEKAIDRFVITIAPIILGKGIPLFEEDREHALELEEVTRF
                     GQFAQLTYKNLEEN"
     gene            complement(12794..13792)
                     /locus_tag="U0342_001422"
     CDS             complement(12794..13792)
                     /locus_tag="U0342_001422"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase family
                     protein"
                     /protein_id="HEM2422770.1"
                     /translation="MKAVGLTRASTDFVDIEIDKPVPENHDLLVRIKAISINPVDTKQ
                     REATKLSGDEVRILGWDAVGEVVDTGSEVALFQTGQDVYFAGDVTRQGAYAEYTLIDE
                     RLVGLKPHNLNVEEAAAMPLTTITAWEALFDRLTITENDKGKSILIINGAGGVGSIAT
                     QLAAHAGLEVIATASRPETVEWTKSHGANYVINHRENIPEQLEELGFEQGVDFILCLH
                     NTSAHWDEMQEAIRPQGKICSIVELAEPVKMTLLKDKSATFSYEFMFTRSKYDTTDKI
                     RQHEILTEAAHMLDAGELTTTLNQVLSPVNAATIEEAHKIISSGKMIGKLVVKGFE"
     gene            complement(13889..14161)
                     /locus_tag="U0342_001423"
     CDS             complement(13889..14161)
                     /locus_tag="U0342_001423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422771.1"
                     /translation="MEEQVDLGHFLKKTFIALVAVTLVFIGVLAMFTIIGVIIAIPLL
                     KKASKMLLSKKEASDHTHSHGGKLKIKCPACHAKMKFKDSELLDEK"
     gene            complement(14210..15121)
                     /locus_tag="U0342_001424"
     CDS             complement(14210..15121)
                     /locus_tag="U0342_001424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2422772.1"
                     /translation="MAHNHDHAHGHNHNHAHNANKKSLFISFILIATFMVVEVIGGIM
                     TNSLALLSDAGHMLSDAVALGLSLAAFKFGEKAASSDKTYGYKRFEILAAFLNGLTLV
                     GISVFIFYEAIGRFFDPPQVIGAGMMTISVIGLLINILVAWILMKGDTSENLNMRSAF
                     LHVLGDLLGSVGAIIAALLIIFLGWNIADPIASVIVAALILVSGWRVLKDAIHILMEG
                     KPANVDTEEIKTFFQQQDGVKEVHDLHVWAITSDFNALTAHLTVCEDADRDKILADIE
                     HYLQENFSLEHSTIQLEGNHAHHHHCN"
BASE COUNT         4522 a         3255 c         2594 g         4988 t
ORIGIN      
        1 ccttatttat tattaagtgc agcgccaaca aaatctttaa acaagctttg cggacgattt
       61 ggacgagaaa tgaattctgg gtgatattga caagcgacaa accaaggatg atcagctaat
      121 tcaactactt caactaaacg accatctgga cttgttgcag aaacaatcat accagcttct
      181 tccatctgct ctctatattc gttattaaac tcataacgat gacggtgacg ctcttcaaca
      241 agagttgtac cataagcggc ctcggcttta gtaccttgct taatacgcgc tggataaagt
      301 cctaaacgaa gtgttccgcc catgttttcg atgttctttt gttctggtaa taaatcaatg
      361 atgttatgtt ttgtttctgg ttcgatttct gcagaatgag ctccttcaag accaagaaca
      421 ttacgggcaa attcaacagt tgctagttgc attcctaaac aaataccaaa ataaggcact
      481 ttgtttacgc gtgcatattc aatagcagca attttacctt caatggcacg gtcgccgaaa
      541 ccaccaggaa ctaagatacc atcaacgtct ttcatgattt cagcaacatt ttcttttgtt
      601 actttttcgg aatcaatcca gtcaatttcg atttctgcat catgatcata tcctgcatga
      661 cgaagtgctt ctgctacaga aaggtaagca tcttgcaagg aaacatattt accaactagg
      721 ccaatacgaa cttttttgga aagatttttc acacgatgta ctaagttttt ccaatccgtc
      781 atttccgctt gtggtgcttc taattgtaag tgctcaagga cgatatcatc cattttttgt
      841 ttttgtagag aaagtggtac gttataaagt gtttcttcat cgcgagattc aataacctcg
      901 gaagctttaa tatcacagaa tagcgcaatc ttatctttca tttcttgtga aactggctgc
      961 tctgtgcgaa caacgataat gtttggttga attcctaagc tacgaagctc ttttacacta
     1021 tgttgtgttg gtttagtttt catttcgcca gctgctttga tgtaaggaat taaagttgtg
     1081 tggatataaa gtacgttttc tgcaccaaca tcacttttaa tttggcgaat tgcttctaag
     1141 aatggtaaag attcgatatc cccaactgtt ccaccaattt cagtgatgat aatatctgaa
     1201 ttggtcatgc gcgctgcacg gaaaacacgg tcttttaatt cgtttgtaat gtgtggaata
     1261 acttgcactg ttccacctaa gtaatccccg cgacgttctt ttttaataac ttccgagtaa
     1321 actttaccag ttgtcacgtt gctgtattta tttaagttaa tatcgataaa acgttcgtaa
     1381 tggccaaggt ctaggtccgt ttccgcgccg tcatctgtca cataaacttc cccgtgttgg
     1441 tatggactca ttgttcctgg atctacgttg atgtatggat caaatttttg aatggttaca
     1501 ctaagtccac gatttttcag caaacgtccg agtgatgctg ctgtgattcc ttttccgatt
     1561 gacgaaacta cgccacctgt aacgaaaata tactttgtca tgttaaaaaa atctactcct
     1621 tcctgaaatg aaaaacttgc agggtctgac gattttcctg ctggggtggg aaattgccag
     1681 ataaaacaat attgtgatta tctctctagc acacaaatca caatttcaag tattttgtaa
     1741 accaaaataa aaaacactcc gcctactttt aaaagtaagg gagcgctgat tctcataaat
     1801 atccgtccct ataaaaggga gcccaaataa aatactacta atgatggcga tagaagtcaa
     1861 gtctttattt tatgaaaccg ccatcaatcc attaagtagg ctaaaaaaaa tcagacagac
     1921 acttttccac aaaaatggac gcatctatct gattaaaatt agttattatt tatcttctgg
     1981 gtcttctgta taatccccgt ccgtataatc atcttctaca gttgctaagt cgccttcgat
     2041 tccgtctggc aagtgatcat cgtcatcttc gtcttcatca agtaagacat ctgcaagaga
     2101 aatttcttct tcaccaagct cttccacgat ttcttcatca tcgtagtcca cgtcatcatc
     2161 caagatttct tcatcttcat cgtcatcatc gtctgattta cgttttttct tcggtgttgt
     2221 ttgtgtttga acttcttcat caatcgcatc cattggatac catgcacgaa gtccccacgt
     2281 gttgtttcct agtgaaataa agtttccatc aatattcata tctgtataaa attgaacaag
     2341 acgctccctt atttctgcat ctttcaaacc taggaacgct tgaatctctt tcactaattc
     2401 agggaaaaga atagtttctt tccgctgttc caaaataaaa tgtgcaacat caattaaaga
     2461 tagttcacta cgttcttctt gcgttaagtt ctttaaatcc aaaactggca cgccctttct
     2521 atcgtaattc caatttattt agctgttatt ttttcgttca gcccaacttc actattttac
     2581 atgttatttc tggcaagtac aacctaaatt ttcttaatta catcaattct tcttgactat
     2641 ttgatatccg atgtaaaaga aaaggatggc cattaaaaga attgggattg atccaagttg
     2701 aaagtcgtag agaatataga ttgcgacgca cagaaacacg aaaagcagcg ccaaaattat
     2761 taatcgcttc atcatatgct ctccccgttt tttcaattac ctatgtttct attaacttta
     2821 gtacattttg gttatgacgt caacgagtaa cctataaatt taggatatca cattttttct
     2881 ggtgctgata cacctaaaag cgtcaaacca tttctaaggg taatttgcgc agtcttaata
     2941 agtgctagtc ttgcttttgt tacttctaaa ttatccatat caagtacttt attgctattg
     3001 tagaaacggt ggaaggaaga cgctaaatca tttaagtagc gaacgatacg gtgtggcgct
     3061 ctttttgtag cagcttccgc aacaacatcc gcgaactcac ctaacacttt taataaatca
     3121 tattctgctt ctgtttgcag taagctcatg tctgcgtctt ttgttacctc tagaccttgt
     3181 tctttaccag aacgtaaaat gctagaaatt ctggcgtgcg catattgtac ataataaact
     3241 ggattatcat tagatgtaga tttcgctaag ctcatatcaa agttcatatg tgtatctgaa
     3301 ctacgcattg caaagaaata tcttgttgca tccagtccaa cttcttcaat taagtcacgc
     3361 attgtaactg atttaccagt acgtttactc attttaactt gaacaccgtc ttcaaataag
     3421 tgaactagct gaatgatttc tacttctaat tgatttggtg agtagccaag cgcttcaatt
     3481 gcagcacgca tacgaggaat atagccgtgg tgatcagctc cccaaatatc aattaacaca
     3541 tcaaagccac gctctaattt gtttaagtgg tacgcgatat ctggtaagaa atacgtataa
     3601 ctaccatctg atttgattaa aacacggtct ttgtcatctt caaaatcagt cgttcttaac
     3661 catgtcgcgc catcttgctc ataaatatag ccattttcgc gtaaacgttc taacgctggt
     3721 aatactttat tttcttcgta taaagaagtt tctgagaacc actcatcaaa ggaaacgcgg
     3781 aattcttcta agtcagcgcg taattttcct gtttcaaacg ctaatgcatc tacacggaaa
     3841 acggaacggc gctcttcttc gcttgtgtgc acatatttat cgccgtattt agcagctaaa
     3901 tctttcccaa gcgaaataat atccgcacca cggtagccat cctctgggaa ttcagaatct
     3961 aaacctagtg cttcaaagta acgcgcttct gctgaaagaa ctaaattatt aatttgattt
     4021 ccagcatcat taatgtagta ttctcttgaa acatcaaatc cggccatttt cataatattt
     4081 gctaacgagt cgccaattgc tgcgccacga gcatgtccta aatgcaagtc accagttggg
     4141 ttcgcggaaa caaattcaat ttggaatttt tctcctttac caaaatcaga ctctccgtat
     4201 tttttatctt cggttaaaat cacaggaact aaatcagtta aataagcatt atctaggtag
     4261 aagttgataa aacccggccc agcgatttct acttctttaa ttaatttgtt gtcttttttt
     4321 agttctggaa cgatactttc ggcaatttgg cgaggggctt tcttagctac tctagcaagt
     4381 tgcatcgcta tattagtcga ataatctcca tgctttttat cttttggtac ttctagtaaa
     4441 atttctggta cttccgcttc ttctaaacca accgcttgaa caactccttg tttgatatgt
     4501 tcaattaatt tgatttggtt ctcttgcatg acattcattc tgcgtcctcc tctattttca
     4561 ttaaaacagt atatgagcca atgtattcgc cgtggcttag caaatcatat tgaaatgcga
     4621 cttcactcag tacatcaggc ttattttcat atagttcttc cattgatact agttctgatt
     4681 ctaattgtaa tttccctgct ccggaatcaa cagacgcagt acttctccta ttatctcgga
     4741 aaaagtgcat tctcatattt acggcaccac ttctcattaa aagtagttcg ttgtcagcaa
     4801 tttttagaac cgtacgaatt gttccagcta attgtttttc ctcataatgc agataacgat
     4861 tgcctttatc gcggtaaaaa acacccgaaa cagacatatc ggatttctct tctgcatcca
     4921 tctgacggat gacattggtg atatgaatag ttactttttt tcgttccatt tggttggcag
     4981 tcatatcgct tatttacccc tttccggtca gaagaataga cgcattatat tatagtgaaa
     5041 aataacatga aaagcaacag gttaaaatga tgtcagacca aatattgtca aaatcacatt
     5101 taaaacaaat ggaataacgg tattaaaaat tggttgaatc gtaaattctg aaataggtgt
     5161 taatgcaact actaagaaaa taagcatcgc atagcgttca agtggttcca gcttagacct
     5221 ggttgacatt ggcagaaact ccactagtat ttgataccca tcaagcggcg gtagcggaat
     5281 caagttaaac acaaacaaga ctagatttaa ttgcacaaaa atcattaaaa aagtttccgc
     5341 aacggagcca tatgtaaaga aggaataatt tagaaataaa gcatataacc ccacaccaac
     5401 catcgcaagt agtaaattac ttactggtcc tgcaagcgaa acaagtatac ttccaaggcg
     5461 gcgttttttt aatttaaatc gatttaccgg ggtcggctta gcccaaccaa agcctgcaat
     5521 taatatcatt agcaaaccga ataaatcaat atgtacaacg gggtttaaag agagtctccc
     5581 ctcattttta gctgtatcat ctccaaatgc gagagcaacc aaggcgtgtg cccattcatg
     5641 aatagtaaaa gcaattaata atgtaactaa aacatacggt atcatttcga gtggatacgc
     5701 gagaaaacta ggcataggag cctcctttat cttttattga gcaattttta tatgctataa
     5761 tgaaaaaaac gttgatcgag gtgagaaaat gccatttgtt accattcaat ttttagaagg
     5821 tcgtacggac gatcaaaaga aagctttagt tagcgaagtg acggaagttg ttgccaaaaa
     5881 tctaaaagca ccaaaagaaa acattcatgt gattttagaa gaaatgaaaa aaacggatta
     5941 cggtgttggc ggcgtaagga aatctgatat ttaagtgtgt aagaagcaag gcatttcgcc
     6001 ttgctttttt atttttcctt taacgaatgc gcatggatga gggcgatcat tctctcggtg
     6061 attgcttctt ccacgtgtcc actttcgata aaatcgagcg gataatataa tttaatatcg
     6121 gtccggcgct ctcgaccaat cgcctcaaca accggagact cggtcgataa ctcacgcaat
     6181 tccccatttc ccatcaatag tttaattggg tctttgccac ttcccactcc aggaagatag
     6241 taatcataag gtaaatcgct ggaagaatca attactaaat aataagacgg atcaatatcg
     6301 gccttttcaa gaagtccttt tagttctgcg taaagttctg catcttcttt cggatcgtag
     6361 ttaatgtatc gtagcaatct tctattcaaa aagcgactac ataaatcact caaaatcgga
     6421 tcttcttcct cttgccaaat agaaaaatag tacatcaaca caatatcatc aagcacaata
     6481 taatctttta aactcacttc atttaaaaag aatggtagca cttgaatagg ggtagcttga
     6541 aattcatatc cagcacaata taactttttg gcacgctcaa ggattttcca taatagcact
     6601 tcaccgctac gactaactgg atgaaaatac acttgttgat acatttgata acgactcata
     6661 atataatctt ctaccgcatg catgccagaa tattttacaa taacaccatt gccatctggg
     6721 cttgggcgta gaactcgcaa aatccgctct aaatcaaact ttccatagct cactccagta
     6781 taataggcat ctcgcagcaa ataatccatt cggtcagcat caatctgact cgaaatcaac
     6841 ttcaccaatg tttgattcgg ataatttttc ttaataatag cagcaacttt aagcggaaat
     6901 tcttctcctg ctctcatcaa tattttatta acttccgtat ctccaataat tatctcttgc
     6961 gtgtatgatt catggtccgt tccaaatact ttttcaaaag cgtgagaaaa tggtccgtga
     7021 cctaaatcat gcaaaagcgc tgcacacaat gccaccatgc gctcctctgg atccagttgt
     7081 ggttcattcg caaatgtgac atcgattatt tgccgaacaa tttcgtaaac gcctaacgaa
     7141 tgattaaaac ggctatgttc cgccccatga aaagtaagtg aagttgtccc caattgatgg
     7201 atacgccgca aacgctgaaa ctcttttgta gcaatcaaat cccaaattat cttatcagaa
     7261 acatgtacat atccatgaac cgggtctttg aatactttct cttcccttag tttctctgtt
     7321 aaataactca tacaacctcc tcctctcaag taagcacttt atcatttcgg gcaattaaac
     7381 gttcataata ggctgggaaa agatctaact cttcagacgt aagcgtacca gatacaagct
     7441 cacctgcgta atgccgcaaa ctgttgaaaa ggcgtactaa cgttccattt aaacttatat
     7501 catttttcat taagtccgaa agcgaaccca taacattcgg attcacatct ggaaaagtat
     7561 attttgtttg ctttgctttt ccgctaatcg tatagaaatc gcggatcagt tctgagcgag
     7621 tagtttgatc cccatcaata gctaaataaa tttggaccgc tacccctttt gccattctac
     7681 gctgagaaat accagcgaat tttttccctt gaatactaag gtcgtaacta ccaggacaat
     7741 aagagtcttc tatttctttt gcttcaatta cctcattaca atctacgaac atgtctttga
     7801 taagcgtaaa catcgtttca taaccacgct caatcgcaat tccgcgttct gcatctggga
     7861 gcaccataga caaattaagt acccctgaat caaggacaac tgctaaacca ccggaatttc
     7921 taactacaac acggtagcct tgttcttgta aaaaggcaat tcctttatct atatcaggca
     7981 acttagaatc ttgaattcca agggaaactg ttttttcatg cacccagccg cgaacagtag
     8041 atggcgccat tcttgctccg accgagcgac atagcgtatc atctgtcgca aatgattgaa
     8101 tggcatcgaa agccggatta atcgttgtat tatcaataaa tcgccacaca tcttgtttta
     8161 gtaaggtgtc ttctatattc atctctatgt cctccatgat tttctttttg ttattatagc
     8221 ataccgacag caaaattaga tgcaaatggc ttaaaatagc catttaatca tgaataacaa
     8281 tttttgagcg gttatttgac ttttttacgc ttaatgttga aaactatggc tgtaatgatt
     8341 gatataacaa ctgatttgag aattatatct tttttcattt tcatcgcctc atttcctcct
     8401 cttattataa caaacttacc atacaaaaaa acctaacttc tgtaaaagaa attaggttca
     8461 atatatctaa aagcctaggg agctttttta gcaaatgtat taccagttgt agcggtcttc
     8521 attgtcgcgg ctcgagcgtt ttggagaatt accccacata cgataaagca gatatccaat
     8581 accacctagt ataagtactg ggaataagaa gtgaagcgtg attccaacga tatcaagtac
     8641 gatattaagt gcgataaatc ctaaaataac tgtaaaaaat attttccaaa aactattcat
     8701 gattttttcc tcttttctaa ttttatttac tacttgcaag tggaacactg tttatttcct
     8761 tggcttggac gagtaattca ttgtcttgaa cgacgatttt gtactgttta ttctttttaa
     8821 gttgtgttgt tgacatgaag ttaactttgt gactgtttcc ttgattatct aaacacgatt
     8881 cccggaatga gtacccttta aattttgact tggtaacttc ttttccatcg tttttgattg
     8941 taacgtaata tgtatttgct gccgatccaa ttggtgctga aaattcaatt acaaccattg
     9001 ttaatacaaa aattgcagcc agtaaaccga aaagtccctt tttcattgtt tttaccgtcc
     9061 ttttttgttg ataggtttat tatagaggag atcaaaaaaa ggaacgaacg gctctaggct
     9121 gaaaattggt acatcctaag tcttattttc tttcgggtat aaaaatagag cctagtttgg
     9181 ttaactagac tcttttaaat taattttttt caatccattt gtagttttct gaaccgattg
     9241 gatacgtggt gtagtttttc aggttgcttt tttgcaagta cgcgcggcca ccttggtata
     9301 gcgggataag cacggcgtta tctttaagta aaatttgttc tgcttctagt agtgcttgcc
     9361 atcttttttc tgggtctgcc gaaagtttac ccttggctcc taggactaat tcatcgtatt
     9421 tagcatccga gaagcctgtg tggttccccg ggctgtttgt taagaatagg ttgaggtatg
     9481 tgagcggatc ttgataatcg ccaccccatc cacctagtaa cagttcaaaa tcttgtgtca
     9541 catctgcttg gaaactcgct tggtttgtga cattttttaa tttgattgtt agtccaggca
     9601 gattttcttc taattgattt tggataaatt ctgtttgttt gcgttgcaag gacgtgtcgc
     9661 cacttgttaa cgtaagtgtt aattcggttt tcccgatttc tttcaagcct tgcttccatg
     9721 cgtttgtagc ttcttgttgg tcaaacttga gtaagtcgcc gttttgttta cggaaatcct
     9781 cttttgtctc tgggtcaaac atgatatcac cgggaacatc cccgtttaat gctttagatc
     9841 catttgcaag tagtgtattg accatgccag tcttatcgat agccatcgct aaaccgcgac
     9901 gtaagtttaa gttagctaaa tccgttttca cgccatcttt gccttggttc attttcatat
     9961 aaacagagcg tccagttgct tctttatgga agtttttatc atctttgtat tgtttaacaa
    10021 attcaccatc aagctctacg cggtccaatt tatttgtatt gtataagttt aaagccgcat
    10081 tagtatcttt tacaacagtt acatggattt ttttagttgg aacgttcttt ttatcccagt
    10141 aagtaggatt tttaacgtaa tcccatgtca tatttgttcc attccaattt tctaatttat
    10201 acgggccgtt ggaaatcaat gtgtcgcttt tagtcccata acggtcacct tgtttttcta
    10261 caaacgcttg gttttgtggg aagaacgtgc ccgtcgttag gagttctttg aatattggca
    10321 ccgggttttc tagttcgatt tgtagtgttt tgtcgtctaa cgctttgatt ccaagttcat
    10381 ccggtgacat ttcacctttt aaaatttggg tagcattttt gacgatttcc tccatttgcg
    10441 gtccgtatgc agcggctgtt tttggatcca ccactttttt ccaagcgtat tcaaaatcat
    10501 gcgccgtcac tgggtcgcca ttggaccaat tagcatcttc gcgaatttta aaaataagtg
    10561 ttttcccgcc atctttttct tcaggttcac tggcagctag agcgagtgcc ggtttcccgt
    10621 ttttatctaa tcgatataat ccttcaaaaa tttgattgat tactcggaaa cttacgctat
    10681 tgtctgcgag tgttggactt gcattcggaa ttccactcgt ttccatgatg ttaaccactt
    10741 tggatttctt gtcggatgtt actttttcat tttccccttt attgccagac tgacatgctg
    10801 taagtgctag taaacataat aaactgagtg ccactaccat ttttctggct gttttatgca
    10861 atatttctcc tcctcttttg taagcgcttt ttgattacgc aaaaaaatga cggacttcct
    10921 gccaaattcg cgcagaactt ccgccaccat tataaaccga aactgtatca attgtaaata
    10981 aaaactgtta tatttttatt tcttattaag gtaaactcct gacccaacaa caataacaca
    11041 catcgtcatc aacattgcta gcattaagta actgggatca ttgcgcataa acaaagcaag
    11101 aataaaacag attgtaccag ctatattaag tgtaacagtt gtgatttttc taagtaggtt
    11161 tcttgaccat gcatcgatct ttttaaaacc aatcatcgtt aaaaatttaa agagtttttt
    11221 cgagtattga atgtaggccg caacaacgaa catgaatgct cctgctgtga ctagagaaaa
    11281 tctaccagtc gggatatcgt aacctagcgc gtatacaata atactcattt gaatgattgt
    11341 taacagcact aacaacagtc taaaacaata ttcaaattcc aacaaactct cttgattcac
    11401 tttttctttt ccgtaatatt ccgttcccgt aaacataatc attaaaaaag gaatcagaat
    11461 taagccaagc cacttttgca taaacatatc tggggagaag tccgtaccga aatgcaccgc
    11521 cacttcagaa ggtagtagcg gatataacac agcagaaatt cctactgtga aaagaattat
    11581 catactagga aatataccaa ctttcctcat tcccctcacc tcttccaata taattactgg
    11641 caataggcga caagttcctc ccttgtttcg ataagttgca ctttctcggt atttgctaat
    11701 tgctctttcg tttcatcaaa accttgttca gatagtgcac gtgtcgctgg taaataaact
    11761 aatacagaaa agcctgccct acttaactgt ataaccgtag ttttcacaca aaaatcaaaa
    11821 gctaaacctc caacaagaac taaatcgact ttttgttccc gtaaatattc tagaacacct
    11881 gttgaaagct gttcaacaat atcgtggtaa caagcgccgt acggatgaat atccggctcc
    11941 atacctttcc aaataaagta atcataatca gtcacaactg gtaaaccatc taataattca
    12001 aaaccttttg tacctggttc acagtgcctt acccaagtac ggtctgcatt tggatattcg
    12061 agttcagcca gcatttcgtc tttggaatcc actacccata cggcattttg cggatgggcg
    12121 tccttactac caattcgaag agaagcaaga cttgccataa aattaagttc tggcacaatt
    12181 ttgtctccgc ccgaaaccgg taattcatcg ggacaaagcg gcgtaaaacc tttttgtgca
    12241 tcaatatcaa aagcagcaat tttcatttaa ttttcctcca agtttttata cgttagttgg
    12301 gcaaactggc cgaaacgagt tacttcttct agctctagcg cgtgctctct atcttcttca
    12361 aagagtggaa ttccttttcc taaaataatg ggcgcaatcg ttatcacaaa ccgatctatc
    12421 gccttctctt ttaaaaattg ttgcactaat tttgcgccac ctacaagcca gattttttca
    12481 ccatcaatgt tattcagcca tgtatcaaca gtcccagcta caaagtcagc atactcatct
    12541 tttgtcccag ctttcgtgtt ggaaaaaacg tagacatctt ttttactgta agggaacgtg
    12601 tcagtaagcg agaaaatttg ttgatacgtc gtccggccca ttacaactgt atctacgttg
    12661 tcaaagaaag cttcataacc cgcatcccct tcactatcaa tagattctaa ccattcgaca
    12721 cttccgtttt catctgcaat ataaccgtcc aaactaaccg cgatatatag cgcaacttgt
    12781 ttttcactca ttattactca aatcctttca ctactaattt tccaatcatt tttccggatg
    12841 agataatttt gtgagcttct tctattgtcg ccgcgttcac gggtgataaa acttgattta
    12901 atgtcgttgt taattcgccc gcatctagca tatgagctgc ttctgttaaa atttcatgct
    12961 gtctgatttt atctgttgta tcatatttcg aacgagtaaa catgaattca tagctgaaag
    13021 tagcactctt gtcttttaaa agagtcattt tcactggctc tgcaagttct acaatagagc
    13081 aaattttccc ttgtgggcga atcgcttctt gcatctcatc ccagtgagca ctcgtgttat
    13141 gcaaacataa aataaaatca actccctgct caaatccaag ttcttccagt tgttctggga
    13201 tgttttctcg gtggttgata acatagttcg cgccgtggct cttagtccat tctactgttt
    13261 ctgggcgtga ggccgtggcg atgacttcaa gaccagcatg tgcagctagt tgggtcgcaa
    13321 tagaaccaac accaccagcg ccattaataa ttaaaattga tttaccttta tcattttcag
    13381 taatagttaa acgatcaaac aatgcttccc aagctgtaat agttgtcagt ggcatcgcag
    13441 cagcttcctc tacgttcaag ttatgtggtt tcaaaccaac taaccgctca tcaattaaag
    13501 tgtattctgc gtacgctcct tgccttgtga cgtcacctgc gaaataaacg tcttgcccgg
    13561 tttgaaataa tgcaacttca ctcccagtat ctactacttc tccaaccgca tcccaaccta
    13621 aaatccgtac ttcatctcca gatagcttcg ttgcttcacg ttgtttagta tctaccggat
    13681 tgatggaaat cgctttaatt ctaactagta aatcatggtt ttctggtact ggcttgtcga
    13741 tttctatatc cacaaaatcc gttgacgctc tcgttaatcc tacagctttc atttgacaac
    13801 acctctcgtt tccttttccc gaatttctta aaataatgca catttagata aaaaagcctt
    13861 ctcaaactca ctgagaaggc tttaaaactt atttttcgtc gagcaattcg ctatctttga
    13921 atttcatttt tgcatggcag gccgggcatt tgattttcaa cttgccaccg tgtgaatgag
    13981 tatggtcgct agcttctttt ttggaaagaa gcattttgct agcttttttt agtagcggta
    14041 tagcgataat tacaccgatg attgtgaaca ttgctagaac cccgataaac actaaggtta
    14101 cggcaactaa agcgataaaa gtttttttca aaaaatgtcc taaatcaact tgttcttcca
    14161 tctaaaccaa ctcctctaat tgatacttta atcatatcat gaagcggcat taattgcagt
    14221 gatgatggtg agcgtgattt ccttcaagtt gaatcgtact atgttctaat gagaaatttt
    14281 cttgcaaata atgctcaata tctgccaaaa tcttatctcg gtcggcatct tcgcatacgg
    14341 tcaaatgagc tgtaagagca ttgaaatccg aagtaatcgc ccatacatgt aaatcatgca
    14401 cttctttgac accgtcttgc tgttggaaaa acgttttgat ttcttctgta tccacattcg
    14461 ctggttttcc ttccatcaaa atatgaatcg catctttcag tacacgccaa ccactaacta
    14521 agataagtgc cgcaacaata acactcgcaa tcgggtcagc gatattccag ccaaggaaaa
    14581 taatgagtaa cgcggcaata atcgcaccaa cagagccaag caaatctcca agcacatgca
    14641 agaacgcact acgcatattc aaattttcgc tagtgtcacc tttcattaaa atccaagcga
    14701 ccaaaatatt aataagcaat ccgataacag aaatagtcat cattccagct ccaattactt
    14761 gtggcggatc aaagaagcga ccaatcgctt catagaatat aaaaacagaa atcccaacga
    14821 gcgttaatcc attaagaaat gcagctaaaa tttcaaatct tttatagcca tatgttttat
    14881 cggagcttgc tgctttttcg ccaaatttaa atgcagctaa acttaaacct agcgccacgg
    14941 cgtcagagag catgtgcccc gcatcagaaa gtagcgccaa actattggtc ataattccac
    15001 caataacttc gactaccata aatgtagcaa ttagaataaa actgataaat aatgattttt
    15061 tgttggcatt atgcgcatga ttatgattgt gtccatgagc atgatcgtgg ttatgtgcca
    15121 tatgattact tcccctctgt aagtagctaa tttccttata tgcatatgtt agcatatata
    15181 cattttaagt gcaaccattc ttataaaaaa acttccattt ttagattcat ataaaatgaa
    15241 actaacggaa gtaattctac gagtacaaga gtcatgtatc cagcaaatat aaaaaagtcc
    15301 accaaaatga aattagcagg taaatctact aaagaaatta tacgagcgtt aaacatcaa
//
LOCUS       DASEAA010000055        15234 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.055, whole genome shotgun sequence.
ACCESSION   DASEAA010000055 DASEAA010000000
VERSION     DASEAA010000055.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15234)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15234)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15234
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.055"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..147)
                     /gene="secE"
                     /locus_tag="U0342_001425"
     CDS             complement(<1..147)
                     /gene="secE"
                     /locus_tag="U0342_001425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecE"
                     /protein_id="HEM2422773.1"
                     /translation="MSAIARFFRNVSSEMHKVTWPTRKELLTYTVTVVITVVLFALFF
                     MLIDF"
     gene            complement(167..316)
                     /gene="rpmG"
                     /locus_tag="U0342_001426"
     CDS             complement(167..316)
                     /gene="rpmG"
                     /locus_tag="U0342_001426"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM2422774.1"
                     /translation="MKKKTSLACSECGSRNYTVNVSGTQKETRLEVKKFCRHCNKHIL
                     HRETK"
     gene            complement(420..1025)
                     /locus_tag="U0342_001427"
     CDS             complement(420..1025)
                     /locus_tag="U0342_001427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA polymerase sporulation sigma factor SigH"
                     /protein_id="HEM2422775.1"
                     /translation="MDNSVNQEELAMLELARSGDTEALEYFFSKYQSVIYWKSTQYFL
                     QGAERDDLIQEAMIGLFKAIRDYDKTKEASFRSFAEMCINRQLLSAVKRASRQKNIPL
                     NNSVSLDTPIAEDDMDWTLLDVISEKAAETPEDFLIKNEDLTHVARQLEQVTSEFEKE
                     VLKQYLEGKSYQEMALFFNKKEKAIDNALQRVKKKMMKQLE"
     gene            complement(1106..1618)
                     /locus_tag="U0342_001428"
     CDS             complement(1106..1618)
                     /locus_tag="U0342_001428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NYN domain-containing protein"
                     /protein_id="HEM2422776.1"
                     /translation="MEQILLVDGYNVIGAWPELSFLKDRDLEAARDKLVEWMAEYQSY
                     TGYRVVVVFDAQFVRGVKRKSKKYQVEVVFTHEDETADEYIEQKAIEWKNVRTQIMVA
                     TSDYTEQWAIFGQGALRISSRELLFEIQEMSKQIGQKIKRIQEEMPKSNLNLDSDVIS
                     QLEKWRRGEE"
     gene            complement(1621..2376)
                     /gene="rlmB"
                     /locus_tag="U0342_001429"
     CDS             complement(1621..2376)
                     /gene="rlmB"
                     /locus_tag="U0342_001429"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (guanosine(2251)-2'-O)-methyltransferase RlmB"
                     /protein_id="HEM2422777.1"
                     /translation="MEQENEQEWIGGRNPVLEVLRSDRDIHKIYVQEGSQKGVLKQVL
                     TLAKERKIQVQFVPKQKIEKVVGGAHQGVAAQVAAYQYAELDDLFAAAEAKDEMPFFI
                     ILDELEDPHNLGSIMRTADSVGAHGIIIPKRRSVGLTQTVAKASTGAMEYVPVVRVTN
                     MVRTMEELQKRGLWIFGTDAKGSSDYRTMDVDMPLAIVIGSEGFGMSRLVREKCDFLV
                     HLPMRGKVTSLNASVAASLLLYEVYRKRFPLEK"
     gene            complement(2376..2786)
                     /locus_tag="U0342_001430"
     CDS             complement(2376..2786)
                     /locus_tag="U0342_001430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mini-ribonuclease 3"
                     /protein_id="HEM2422778.1"
                     /translation="MAEVKEYKQLNGLALAYMGDAVYEKFIREYLLAAGKTKPNQLHK
                     TATKFVSAKGQAVALKAMIAEGFLTEEEDRIAKRGRNAKSYTVPKNTDPGTYSMSTSF
                     EAVLGYLYLAGELDRLQEWMEKALEIVEKGVETN"
     gene            complement(2790..4205)
                     /locus_tag="U0342_001431"
     CDS             complement(2790..4205)
                     /locus_tag="U0342_001431"
                     /EC_number="6.1.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine--tRNA ligase"
                     /protein_id="HEM2422779.1"
                     /translation="MSIQIFNTLKREKEPFKPLKDGEVKMYVCGPTVYNYIHIGNARP
                     IIVFDTVRRYFTYRGYDVKFVSNFTDVDDKLIRAANELKLTVPEVADRFIGAYFDDVD
                     QLNVAKATVNPRVTENMDEIIQLISTLIEKGYAYESAGDVYFRTKKFKDYGKLSGQEL
                     SELQHGARVEYNERKQDELDFTLWKAAKPGEIFWESPFGNGRPGWHIECSALAKKYLG
                     DTIDIHAGGQDLVFPHHEDEIAQSEAATGKTFANYWMHNAFLNIDGEKMSKSLGNFIT
                     LHDVLKDNDPNVIRFFMLSVHYRKPITLNDAILEDAKNGLERLMIAYQNIDHRIQTDD
                     GEYVEEAHEDEWLEQLTELKQAFEDDMDDDFNTANAITTFHELAKRANIYLAKETVSI
                     NVLREFLSMMRLFAEVLGLKLENTQTDSLDDSEVEALIEERLQARNERNFARADEIRD
                     ILKEKNIILEDTAQGTRFRRG"
     gene            complement(4212..4826)
                     /gene="cysE"
                     /locus_tag="U0342_001432"
     CDS             complement(4212..4826)
                     /gene="cysE"
                     /locus_tag="U0342_001432"
                     /EC_number="2.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine O-acetyltransferase"
                     /protein_id="HEM2422780.1"
                     /translation="MPTRLKEDIATIIKNDPATKSFFDAFLTNPGLHALWWHRVANFF
                     YRHKMVLFGKVLSQNARFWTNIEIHPGATIGRRLFIDHGAGIVIGETAEIGDDVTIFH
                     GVTLGGTGKDCGKRHPTVGDGALVSAGAKVLGPVEIGAGARIGAGAVVLKDVPPGATV
                     VGIPAKVVRLNGRTVGHAVPKMDELTLRIAELENIVEKLLKEKE"
     gene            complement(5226..6701)
                     /locus_tag="U0342_001433"
     CDS             complement(5226..6701)
                     /locus_tag="U0342_001433"
                     /EC_number="6.1.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate--tRNA ligase"
                     /protein_id="HEM2422781.1"
                     /translation="MSETKRVRVRYAPSPTGFLHIGNARTALFNYLFARHNDGDFIIR
                     IEDTDAKRNIADGEESQMTNLKWLGMDWDEGVDVPGKYGPYRQSERQSIYEPLIQQLL
                     DEGLAYKCYCTEEELDAEREKQKANGEMPRYSGKCRHLTKEQQAEKEAQGFKPSIRFK
                     VPANETITFNDMVKDDVSFESNGIGDFVIAKKDGIPTYNFAVAVDDHLMEISHVLRGD
                     DHISNTPKQILIYNAFGWEPPIFGHMTLIVNESRRKLSKRDGSIIQFIEQYRDLGYLP
                     EALFNFIAMLGWSPEGEEEIFSKEEFIKMFDPKRLSKSPALFDNVKLTWVNNQYVKKL
                     PLNDVVELSLPHLQKAGVVSAELDQAELDWVHKLVSLYHEQMSYGAEIVPLSEMFFAD
                     AESITFDEEETAVLAEETVPTVISAFKKELEALEVLEAAEVKAAIKRVQKETGVKGKG
                     LFMPIRIVTTGEMHGPELPLAIEVLGREKVLNRLDTWLKNN"
     gene            complement(6720..7193)
                     /locus_tag="U0342_001434"
     CDS             complement(6720..7193)
                     /locus_tag="U0342_001434"
                     /EC_number="4.6.1.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 2,4-cyclodiphosphate
                     synthase"
                     /protein_id="HEM2422782.1"
                     /translation="MIRIGQGYDVHKLAYDRELIVGGIKIPYEKGLLGHSDADVLLHA
                     ITDAIIGAIGAGDIGHFFPDTDMAFKDADSAELLAEIWQKVEADGFRLGNLDATIIAE
                     KPKMAPYVEQMKLRIAELLHADSAQVNVKATTTEKLGFTGREEGIASLAVVLLEK"
     gene            complement(7186..7884)
                     /gene="ispD"
                     /locus_tag="U0342_001435"
     CDS             complement(7186..7884)
                     /gene="ispD"
                     /locus_tag="U0342_001435"
                     /EC_number="2.7.7.60"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEM2422783.1"
                     /translation="MNYELVFLAAGQGKRMNAQKNKMWLELVGEPIFIHALRPFLADN
                     RCSKVIVVSQEEERKHVKELMSQLNVAESRIEIVKGGSERQYSVAAGLERCGTERVVL
                     VHDGARPFITLDIIDRLLIGVEQSKAAICAVKVKDTVKRVVKGVVQETVDRENLWQVQ
                     TPQAFELPILRKAHQLARKEQFLGTDEASLVERLPCPVAIVQGSYYNIKLTTPEDMPL
                     AKAILGELGGIAND"
     gene            complement(7904..8977)
                     /locus_tag="U0342_001436"
     CDS             complement(7904..8977)
                     /locus_tag="U0342_001436"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PIN/TRAM domain-containing protein"
                     /protein_id="HEM2422784.1"
                     /translation="MLTWVIRVCFLILGGTTGVFSLPALWVKLGIGHILLINNPYTDA
                     LIGALIFYLITFWAVKYVEAALNWLEEKLAKIAIATLVYGGLGLFVGLVIAFFASNAL
                     SQTNIPLLNSVVPVILTLVLGYLGFRIGISRRNEFGNFVNNRNAKKRTPEEEKTEEKS
                     KKTYKILDTSVIIDGRIADILTTGFLDGTVVIPLFVLAELQHIADSSDTLKRTRGRRG
                     LDILNRIQKEEAIQVEMYEGDFEDTPEVDSKLVKLAKVMGGIVVTNDYNLNKVCEFQN
                     VPVLNINDLANAVKPVVLPGEKMTVLMVKDGKEHNQGVAYLDDGTMIVVEDGRKFINE
                     TIQVEVTSVLQTSAGRMIFAKPS"
     gene            complement(9110..10483)
                     /gene="radA"
                     /locus_tag="U0342_001437"
     CDS             complement(9110..10483)
                     /gene="radA"
                     /locus_tag="U0342_001437"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadA"
                     /protein_id="HEM2422785.1"
                     /translation="MAKAKRTTKFVCQACGYESAKWMGKCPNCNEWNQMVEALEPSKK
                     SRSAFNHTGEPSKATPITQIASETEKRVETNMPELNRVLGGGVVPGSMVLVGGDPGIG
                     KSTLLLQVSAQLTLTNKKVLYISGEESIKQTKLRAERLQVSGDNLYVYAETNLEAVQE
                     TIDFVKPDFVVIDSIQTVYHPDVTSAAGSVSQVRECTATLMRIAKMQNIAIFIVGHVT
                     KEGAIAGPRLLEHMVDTVLYFEGERHHAYRILRAVKNRFGSTNEMGIFEMRDVGLVEV
                     ANPSEVFLEERLEGASGSTVVASMEGTRPVLVEIQALVSPTMFGNAKRMATGIDYNKV
                     SLIMAVLEKRVGLMLQNQDAYLKAAGGVKLDEPAVDLAVAVSVASSYRDKPTRSTDCF
                     IGELGLTGEIRRVARIEQRVQEAAKLGFKRIFIPKNNEGNWKIPKDVQVVGVETIGEA
                     LKKALPD"
     gene            complement(10630..13092)
                     /locus_tag="U0342_001438"
     CDS             complement(10630..13092)
                     /locus_tag="U0342_001438"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease ATP-binding subunit"
                     /protein_id="HEM2422786.1"
                     /translation="MMFGRFTQRAQKVLALSQEEAMRLNHSNLGTEHILLGLVREGEG
                     IAAKALYELGISSEKVQQEVEGLIGHGEKAVTTIQYTPRAKKVIELSMDEARKLGHTY
                     VGTEHILLGLIREGEGVAARVLSNLGISLNKARQQVLQLLGGGDATGAGRQTNTQATP
                     TLDSLARDLTVIAREDNLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAE
                     GLAQQIVRNEVPETLRGKRVMTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNVILF
                     IDELHTLIGAGGAEGAIDASNILKPPLARGELQCIGATTLDEYRKYIEKDAALERRFQ
                     PIKVDEPTVEESIQILHGLRDRYEAHHRVAITDEALEAAVRLSDRYISDRFLPDKAID
                     VIDESGSKVRLKSFTTPKNVKEMENNLSDLKKEKDAAVQGQEFEKAASLRDKEQKLKK
                     SLEETKANWQEKQGLDHSEVTEEIVAEVVASWTGIPVAKLAETETNKLLNMEKLLHER
                     VIGQDAAVKAVSLAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESMFGDED
                     SMIRIDMSEYMEKFSTARLVGAPPGYVGYEEGGQLTEKVRQKPYSVVLLDEIEKAHPD
                     VFNMLLQVLDDGRLTDSKGRVVDFRNTVIIMTSNIGAQEMKQDKSMGFNVIDPLKDHK
                     AMEHRVLQDLKQAFRPEFINRIDETIVFHSLQEKELKQIVTLLTAQLTKRLAERDIHV
                     KLTEGAKSKIAKDGYDPEYGARPLKRAIQKEVEDMLSEELLRGNIKVGDYVEIGVKDG
                     KLEVRKKDAPKKKTTAKKVKTK"
     gene            complement(13121..14143)
                     /locus_tag="U0342_001439"
     CDS             complement(13121..14143)
                     /locus_tag="U0342_001439"
                     /EC_number="2.7.14.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein arginine kinase"
                     /protein_id="HEM2422787.1"
                     /translation="MNVFEPRLSSWLENAGDDDDVVLSSRIRLARNLKDEQFPVYEQK
                     EEIVDNIAEVFDDNFTLIKMNQISLLQKALLVEKHLISPYMMNKSEYGAVLLNEEENV
                     SIMLNEEDHLRIQCMTPGLRLFDALEAALQIDGYVEEKLSYAFDKEFGYLTSCVTNIG
                     TGMRASVMVHLPGLVTTKRIKSVIEAIRSLGFVVRGIYGEGSMPASNIFQVSNQVTLG
                     KTETEIVEDLTQVMEQIIMQERVARTTLKQKFHIALEDRVFRSYGLLMNCRIISMKEA
                     SDAISDIRLGVELGFFEHISRQKMNELVLFSQPAFLRREAGRDMDELEEKVIRAKVIR
                     EILGDK"
     gene            complement(14140..14658)
                     /locus_tag="U0342_001440"
     CDS             complement(14140..14658)
                     /locus_tag="U0342_001440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrB/UvrC motif-containing protein"
                     /protein_id="HEM2422788.1"
                     /translation="MICQRCGENKAVIALQQLNELGKVESLYLCENCATDEALSSEKD
                     LVKAMDTFSEVALDFLTLLQKEENAQKEIVCENCQLSFEEFLKTNRVGCPECYSAFEA
                     QLVPIIGRVQNGYKKHVGKVPAEVERAEGVQNEISRLQEKLAQLVENEEFEEAAVVRD
                     EIKALKAGGEDK"
     gene            complement(14671..15129)
                     /locus_tag="U0342_001441"
     CDS             complement(14671..15129)
                     /locus_tag="U0342_001441"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CtsR family transcriptional regulator"
                     /protein_id="HEM2422789.1"
                     /translation="MKNISDVIEAYLKQVLESSEAVEIKRSEIADKFECVPSQINYVI
                     NTRFTMERGYIVESKRGGGGYIRIIKVKMNDKLQLLEAIISMVHDKKVSQSFSEDVIL
                     RLLEEEVITKKEARLMVAALDREVLILPLPDRDILRSRILEAMLVALKYD"
BASE COUNT         4314 a         3733 c         2260 g         4927 t
ORIGIN      
        1 gaaatcaatt aacataaaga ataaagcaaa taaaactact gtaataacta ctgttactgt
       61 gtaggttaaa agttcttttc tagttggcca cgtaactttg tgcatttcgg atgaaacatt
      121 ccgaaagaat cttgctattg cagacatacc aaaacctcca tatcgtctat tttgtttctc
      181 gatgtaatat atgtttattg cagtgtcggc agaatttctt cacttctaaa cgcgtttctt
      241 tctgcgtccc gctaacattg actgtatagt ttcttgaacc acactcagaa caagcgaggg
      301 atgttttctt cttcataaat tatctcaact ccgcaatcat taaatatgcc atgccaaaaa
      361 ataggcacat ttcatccata taaatataac atctggctct tagctagtca attgtttttt
      421 cattctagct gtttcatcat tttctttttt acacgttgta aggcattatc gattgctttc
      481 tcttttttgt tgaagaaaag cgccatttct tgatagctct taccttctaa atattgtttt
      541 aatacttctt tttcaaattc gcttgtgact tgttctagtt gacgcgctac atgcgttaaa
      601 tcttcgtttt tgattaaaaa gtcttctggg gtttcggctg ctttttcgga aatcacgtct
      661 aataaagtcc agtccatatc atcctcagct attggtgtat ctaatgagac agaattatta
      721 agcggaatat tcttctgtct agacgcccgc ttcaccgccg aaagaagctg tctgttaata
      781 cacatttctg caaaagatcg aaaagaagct tcttttgttt tatcgtaatc ccgaattgct
      841 ttgaaaaggc caatcatcgc ttcttgaatt aaatcgtccc gctccgcacc ttgcagaaaa
      901 tattgggttg atttccagta aataacagac tgatacttac tgaaaaaata ttctaacgct
      961 tctgtatcac cgcttctcgc tagttcaagc atcgcaagtt cttcttggtt cactgaatta
     1021 tccactaggc taatcggctc ctttacgaca ggatttcttc tatggttgct ccattataca
     1081 tagtcaaaaa cataccgtca atcccttact cctcgcctct tctccacttt tcgagctgtg
     1141 aaatgacatc agaatccaga ttaaggtttg atttcggcat ttcttcctga attcgcttga
     1201 ttttctgtcc gatttgttta ctcatttctt gaatttcaaa aagtaactct cgggatgaaa
     1261 ttcgtagtgc accttgtcca aaaatagccc actgttctgt atagtcagat gttgctacca
     1321 taatttgcgt ccgcacgttt ttccattcaa tcgctttttg ttcgatgtac tcatctgccg
     1381 tttcatcctc atgcgtaaaa acgacttcga cttgatattt cttgcttttc ctcttcacgc
     1441 cccggacaaa ctgtgcatca aaaacgacca caacccgata tcctgtataa ctttgatatt
     1501 ccgccatcca ttcaacaagt ttatctcttg ccgcttccaa atcacgatct ttcaagaaac
     1561 taagttctgg ccaagcccca atcacattat acccgtcaac aagcagaatt tgttccatct
     1621 ttatttctcc agagggaaac gtttccgata aacttcataa agtaacaaac tagctgcaac
     1681 tgacgcatta agggaagtaa cttttccacg cattggtaaa tgaacgagga aatcacattt
     1741 ttcacgtact aagcggctca tgccaaaccc ttcgctacca ataacaatag caagcggcat
     1801 atccacatcc atcgtccggt aatcgctact acctttcgca tctgtcccaa aaatccaaag
     1861 cccgcgtttt tgtagttctt ccattgtccg taccatattc gtcacgcgaa ccactggtac
     1921 atattccatc gccccagtac ttgctttggc tacagtttgc gtcaaaccta cagagcgacg
     1981 tttcggaata ataatcccat gtgctccaac agaatccgct gtacgcataa ttgatcctaa
     2041 gttgtgtgga tcttctaatt catccaaaat aatgaaaaat ggcatttcat ctttcgcttc
     2101 agcagcagcg aataaatcgt ctaactccgc atattgataa gccgccactt gagctgcaac
     2161 accttgatgc gctccaccta ctactttttc aatcttttgt ttaggtacaa attgaacttg
     2221 aattttccgt tctttcgcta atgttaagac ttgttttaat acgccttttt gtgaaccttc
     2281 ttgtacgtat attttatgga tatctctatc agatcgtaat acttcaagaa caggatttct
     2341 cccgccaatc cactcttgct cattttcttg ttccattagt tggtttccac tcctttttct
     2401 actatttcaa gcgccttttc catccattct tgtaaacgat ccaactcacc agctaagtaa
     2461 agataaccta gcactgcttc aaaagatgtg gacatactgt aagttccagg gtcagtattt
     2521 ttaggcactg tatacgactt ggcattacgc ccacgctttg caattctatc ttcttcttcc
     2581 gtcaaaaaac cttccgcaat catagctttt agcgccacag cttgcccttt tgcagaaacg
     2641 aattttgtcg ccgttttgtg taactgattc ggttttgtct ttccagcagc aagtaaatat
     2701 tcgcgaataa atttttcata aactgcgtca cccatgtaag caagcgcgag gccattaagt
     2761 tgtttatatt ctttcacttc tgccatgatt tacccccgtc taaaccgcgt gccttgcgca
     2821 gtgtcttcca aaataatatt tttttctttt aaaatgtctc gaatttcatc agcacgtgca
     2881 aaattacgtt cgtttcgcgc ttgcagacgt tcttcaatta acgcttctac ttcgctatca
     2941 tccagcgaat cagtttgcgt attttctaat ttcaagccta atacttccgc aaacaaacgc
     3001 atcatgctta agaattcgcg cagaacattg atagaaacag tttctttagc cagataaata
     3061 ttggcacgct ttgcaagttc gtgaaaagta gtaattgcat ttgccgtatt gaaatcatca
     3121 tccatatcat cttcaaaagc ttgttttaat tccgttagct gttctagcca ctcgtcctca
     3181 tgcgcttctt ccacatattc accgtcatct gtttgaatac gatgatcaat attttggtat
     3241 gcaatcatta accgttccaa accatttttc gcatcttcta aaattgcatc attcagtgta
     3301 attggcttcc ggtaatgtac agatagcatg aagaaacgaa tcacatttgg atcattgtct
     3361 tttagcacat catgcagcgt aataaaattc ccaagtgatt tggacatttt ttccccatca
     3421 atatttaaaa aggcattatg catccagtag ttcgcgaacg ttttcccagt tgccgcttcg
     3481 gattgagcaa tctcatcctc atggtgaggg aatactaaat cttgcccacc cgcatgaata
     3541 tcaatcgtgt caccaagata ttttttcgca agcgccgagc attcaatatg ccaacccggg
     3601 cgcccattac caaacggact ttcccagaaa atttcacccg gtttagccgc tttccaaagg
     3661 gtgaaatcaa gttcatcttg cttacgctca ttatattcaa cccgagcccc gtgctgcaat
     3721 tccgataatt cttggccaga tagtttcccg taatctttga attttttcgt ccggaaatac
     3781 acatcaccag ccgactcata cgcatagcct ttttcaatta gcgtactgat caattgaata
     3841 atttcatcca tattctccgt tacacgtgga ttcacagtcg ctttcgccac attcagttga
     3901 tctacatcat caaagtaagc cccaataaaa cgatccgcca cttcgggaac cgtcaacttt
     3961 agctcatttg ccgcacgaat taatttatca tccacatccg taaaattaga cacgaatttc
     4021 acatcataac cacgatacgt aaaataacgt cgaactgtat cgaaaacaat aattggccgc
     4081 gcattcccga tatgaatgta gttatacaca gtcggtccgc aaacgtacat tttcacttcg
     4141 ccatctttga gtggtttaaa aggctctttc tctcgtttta acgtattaaa aatttgtatc
     4201 gacaatcaga tctactcctt ttccttcaaa agtttttcta ctatattttc taattccgca
     4261 attcgtaatg tcagttcatc cattttagga accgcatgtc ctaccgtacg accattcaaa
     4321 cgaacaacct tagcaggaat cccaacaacc gttgcgcctg gaggtacatc ttttaaaacg
     4381 acagctcctg ctccaatacg cgctcctgct ccaatttcca ccggcccaag tactttcgct
     4441 cctgccgaaa caagcgcccc gtcaccgaca gttggatggc gtttcccgca atcttttcca
     4501 gttccaccta gcgtaactcc gtggaatatc gttacatcat ccccaatttc tgctgtttca
     4561 ccaataacaa ttcctgcacc atgatcaata aaaagccttc taccaatagt tgcgcctgga
     4621 tgaatctcta tattagtcca gaaacgagcg ttctgcgata atacttttcc aaacaaaacc
     4681 attttatgac gataaaaaaa gttcgccaca cgatgccacc aaagtgcgtg caatcccgga
     4741 ttcgttaaaa aagcatcaaa aaagcttttc gtcgcagggt cattctttat aattgttgca
     4801 atatcttctt ttaagcgagt tggcattttg ttgcctcctt attcaagttc gtacattttt
     4861 tcattggaac ctacgccaac aaaaaaagcc cctccgatac agagacgctt tgcgcggttc
     4921 cactctgact tgagtactgc caattttagc aaatactcca actctagggg tgggggtaac
     4981 gacccacatt tcgtctgacg atactaaatt tcccatcaga attcagggag gcatttcagg
     5041 agtgttcagc taagtcgctt ccagccatgg cgactctctc tataaactta gaattccgta
     5101 cttcttccca tcatcacttt ttccgtatat ttagttctat tataacagca ataaaattcc
     5161 ttgcaactga aatatatcaa aataaaaaag caccccgcaa atagccgaga tgctttcatt
     5221 caaaattaat tatttttcaa ccatgtatcc aaacgattaa gcactttttc acgaccaaga
     5281 acttcgattg caagtggcaa ttcaggacca tgcatttcac ccgttgtcac aatacgaatt
     5341 ggcataaata aacctttacc ttttacgccc gtttcttttt gaacccgctt gattgccgct
     5401 tttacttccg cagcttctag aacttctagt gcttctaatt cttttttgaa tgctgaaata
     5461 acagttggaa ctgtctcttc cgcaagcact gctgtctctt cttcatcaaa cgtaattgac
     5521 tctgcatccg caaagaacat ttctgaaagt ggcacaattt ccgcaccata gctcatttgc
     5581 tcatgataaa gtgacactaa tttgtgcacc caatcaagtt cagcttgatc taactcagca
     5641 gatacaacac ctgctttttg taaatgcggt agcgatagtt ctactacatc atttagtggt
     5701 aattttttca catattggtt attcacccaa gtcaatttaa cattatcaaa taatgctggt
     5761 gatttagata aacgcttcgg atcaaacatt ttaatgaatt cttctttaga gaaaatttct
     5821 tcttcccctt ctggagacca accaagcata gcaataaagt taaacaaagc ttctggtaaa
     5881 tatcctaaat cgcgatattg ttcgataaat tgaataatcg aaccgtcacg tttacttaat
     5941 ttacgtctgc tctcattcac aataagtgtc atatgaccaa aaattggcgg ctcccagcca
     6001 aatgcattat aaatcaaaat ttgcttaggc gtattcgaaa tatggtcatc cccacgaaga
     6061 acatgagaga tttccattag atggtcatcc actgctacag caaagttata agtcggaatt
     6121 ccatcttttt tcgcaataac aaaatcgcct attccatttg attcaaaaga aacatcgtct
     6181 ttcaccatat cgttaaaagt gattgtttca tttgctggca ctttgaaacg aatacttggt
     6241 ttaaaacctt gcgcttcttt ctccgcttgt tgttcttttg ttaaatgacg acatttcccg
     6301 ctataacgag gcatttcacc gtttgctttt tgtttttcac gttcagcatc cagctcttct
     6361 tccgtacaat aacatttata agccaaacct tcatccagaa gttgttgaat taacggttca
     6421 taaatggatt gacgttccga ttgacggtaa ggtccgtatt ttccaggaac atccacacct
     6481 tcatcccagt ccatacctag ccatttcaaa tttgtcatct gactttcttc accgtcagct
     6541 atgttacgtt tcgcatccgt gtcttcaatt cgaatgataa aatctccatc attatgtctt
     6601 gcaaataaat agttaaatag ggcagtacgc gcattcccaa tatgcaaaaa tccagttgga
     6661 cttggtgcat aacgtacacg tactcgtttt gtttcactca caattattca ctccttcaat
     6721 tatttttcaa gtaagacaac ggctagactt gcgatgcctt cttcccgacc agtaaaccct
     6781 aatttctctg tcgtagtcgc ctttacatta acttgggctg aatccgcatg tagcaactcc
     6841 gcaattcgaa gcttcatttg ctccacatat ggcgccattt ttggcttttc agcaataata
     6901 gtagcatcta gatttccaag acgaaaacca tccgcctcta ccttctgcca aatttccgca
     6961 agtagctcag ctgaatccgc atctttaaaa gccatatctg tgtccggaaa aaaatgacca
     7021 atatcaccag caccaattgc gcctatgata gcatcagtaa tagcatgaag aagtacatcc
     7081 gcatcactgt gacctagtaa ccctttctca taaggaattt taatcccgcc aacaatcagt
     7141 tctcggtcat aagcaagttt atgtacatca taaccttggc caattctaat catttgctat
     7201 ccctccaagt tcccctaaaa tcgccttagc gagcggcata tcttcaggag ttgtcagctt
     7261 aatattataa tagcttcctt ggacaatagc aacaggacaa ggaagtcgct caaccagact
     7321 agcttcatcc gttcctaaaa actgttcttt tcgagcaagc tgatgcgctt ttcgtaaaat
     7381 aggcagttca aaagcttgcg gcgtttgaac ttgccaaaga ttttcacggt caacagtttc
     7441 ttgaacgaca cctttcacca ctcgtttcac cgtatctttt acttttactg cacaaatcgc
     7501 ggctttactt tgctctacac caattaataa tcgatcaata atatctaacg tgataaacgg
     7561 tcttgcgcca tcatgtacta agacaacccg ctccgtccca caacgttcaa gacctgctgc
     7621 cacactatat tggcgttcac ttccgccctt cacaatctca attcggcttt cagcaacgtt
     7681 aagctgactc attaattctt tcacatgctt tctttcctct tcttgactca caacaatcac
     7741 tttggaacaa cgattatctg ctaaaaaagg acgcaaggca tgaatgaaaa ttggttcacc
     7801 aactaactct agccacattt tatttttctg ggcattcatc cgttttcctt gacctgccgc
     7861 taaaaaaacc aactcataat tcatgcttat ttcctccttt taatcaggat ggtttagcaa
     7921 aaatcattct tcctgctgat gtttgaagta cactcgttac ttccacttgg attgtttcat
     7981 taataaattt acggccatct tctacaacaa tcatcgttcc atcatctaaa tatgcaacgc
     8041 cttgattgtg ttctttacca tctttcacca tgagaacagt cattttctca cctggcaaaa
     8101 caactggttt tacagcattc gccaaatcat taatatttaa aaccggtaca ttttggaatt
     8161 cacatacttt gttcaaatta taatcatttg taacaacaat accgcccatt actttagcaa
     8221 gtttcacaag tttactatcc acttctggcg tatcttcaaa atcaccttca tacatttcca
     8281 cttgaatagc ctcttctttt tggattcgat ttaaaatatc taatccccgg cgccctcttg
     8341 tacgtttaag cgtatcggat gaatccgcaa tatgctgaag ttcggctaac acaaatagtg
     8401 gaataaccac cgttccatct aaaaatccag tagtcaaaat gtctgcaata cgaccatcaa
     8461 taattacact cgtatccaaa attttatatg ttttcttaga tttctcttct gttttctctt
     8521 cttctggtgt tcttttcttt gcatttctgt tattgacaaa atttccaaat tcgttgcgac
     8581 gactaattcc gatacggaac cctaaataac ctagaactaa tgttaaaata actggtacta
     8641 ctgaatttaa aagcggaata tttgtttgac ttaatgcatt gctcgcgaaa aacgcaatga
     8701 ccaaacctac aaataaacca agtcccccat aaacaagggt tgcaatagca attttagcta
     8761 acttttcctc taaccaatta agtgcggctt ctacatattt caccgcccag aaagtaataa
     8821 gataaaatat aagtgcacca atcagagcat cagtataagg attattaatt agcagaatgt
     8881 gacctattcc aagtttcacc catagagcag gtagtgaaaa gactcccgtt gtcccaccta
     8941 gaattaaaaa acacactcga attacccatg taagcattta gtttcctcct ttccattttt
     9001 aatttatata tataattggg ctattaccaa atatacatat agcactattt tacactatta
     9061 aaagactata ccgcaaatag tactcacgga atcaacgaag tatttagttt taatctggta
     9121 aagctttctt caaagcttct ccaatcgttt ccaccccaac cacttgcacg tctttcggta
     9181 ttttccaatt accttcgtta tttttaggaa taaaaattcg cttaaagcca agttttgcgg
     9241 cttcttgtac gcgttgttca attcttgcaa cacgacgaat ctcacctgta agtccaagtt
     9301 ctccaataaa gcaatccgta cttcttgttg gtttatcacg atagctagat gcaacactga
     9361 ctgcaaccgc caaatccact gcaggttcat ccaatttaac cccaccagct gctttcaaat
     9421 aagcatcttg gttttgcaac attaaaccta ctcgcttttc taaaacagcc ataattagcg
     9481 aaactttatt atagtctatt cctgtcgcca ttcgcttagc attaccaaac atcgtaggcg
     9541 aaacaagcgc ttgtatttcc acaaggacgg ggcgagttcc ttccatagaa gctacaaccg
     9601 ttgaacctga agcgccttca agacgttctt ccaagaacac ttcggaagga ttagcaactt
     9661 ctacaagtcc aacatctcgc atttcaaata tacccatttc attagtggaa ccaaaacggt
     9721 ttttcactgc acgcaaaatc cggtaagcat gatgacgctc cccttcaaaa taaagcacag
     9781 tatcaaccat atgttcaagt aggcgcggcc ccgcaatagc accttccttc gttacatgtc
     9841 caacaataaa gatagcaatg ttttgcattt tagcaattcg catcaatgtc gctgtacatt
     9901 ccctaacttg cgaaacactc cccgctgcac ttgtaacatc gggatgataa acagtctgaa
     9961 tggagtcaat gactacaaaa tcaggcttca caaaatcaat cgtttcttga actgcttcta
    10021 aatttgtttc tgcatacaca tataaattat ctcccgaaac ttgcaagcgt tccgcccgca
    10081 gcttcgtttg tttgatagat tcttctcctg atatatacaa tactttttta tttgtgagcg
    10141 tcagttgagc tgaaacttgc agtaataaag tcgacttccc gataccagga tccccaccga
    10201 caagtaccat agatcctgga accacacctc cgccaagaac tctatttaac tccggcatat
    10261 tggtttcgac acgtttttct gtttcacttg ctatttgagt aattggagtc gctttcgaag
    10321 gttctcccgt atgattaaaa gctgagcgtg atttttttga cggctccaaa gcttctacca
    10381 tctgattcca ctcgttgcaa ttcggacatt ttcccatcca ttttgccgat tcatatccac
    10441 atgcctgaca cacaaatttg gttgtccttt ttgctttagc catttctaca tccctccata
    10501 catatgctcc attttaccac agatcatctg ttcgcgttaa tccttttcat caaattcgtt
    10561 tttttgacac gaatcctgat ttttccataa aaaacctccc ttcaaaattg attaagggag
    10621 gcgtgtttgt tatttagttt ttaccttttt tgcagttgtt ttcttttttg gtgcgtcttt
    10681 ttttctaacc tctaacttgc catcttttac accaatttcc acgtaatcgc ctactttaat
    10741 gttaccacga agtaattctt cagaaagcat atcttccact tctttttgaa tagctcgttt
    10801 caaaggacgg gctccgtatt ctggatcgta tccgtcttta gcaattttgg atttcgcacc
    10861 ttcagttaat ttcacatgaa tatcgcgttc ggctaatcgt tttgttaatt gagcagtcag
    10921 caaagtaaca atttgtttca attctttttc ttgtagcgaa tggaatacaa ttgtttcatc
    10981 aattcggttg ataaactctg gccggaacgc ctgttttaaa tcttgtaaaa cacggtgctc
    11041 catagcttta tggtctttaa gcggatcaat aacattaaag cccattgatt tatcttgttt
    11101 catttcttga gccccaatat tggaagtcat aatgatgacc gtatttctaa aatcaaccac
    11161 ccgtccttta gaatcagtca aacgaccatc gtcaagcact tgtagcaaca tattaaatac
    11221 atccggatgc gctttttcaa tttcatctaa aagaactact gaataaggtt tttgacgaac
    11281 tttttctgtc agttgcccac cttcttcata gcctacataa cctggaggag ccccaactaa
    11341 acgagcagtg gaaaatttct ccatgtactc agacatgtca attcgaatca tcgaatcctc
    11401 atcaccaaac atagactcag caagcgcgcg agcaagttct gttttcccaa caccagtagg
    11461 tccaaggaaa ataaaggaac caatcggacg tttcggatct ttaagtcccg cacgagctcg
    11521 acgtacagct agcgaaacag ctttcaccgc agcatcttgc ccaatcacac gctcatgtaa
    11581 aagtttctcc atatttaaaa gtttatttgt ctctgtttcc gcaagttttg caactggaat
    11641 cccagtccaa cttgcaacaa cttcagcaac aatctcttct gttacttcac tatggtcaag
    11701 cccttgcttt tcttgccaat tcgcttttgt ttcttctaat gattttttaa gtttttgttc
    11761 tttatcgcgt aatgacgctg ctttttcaaa ttcttgccct tgaacagccg catctttttc
    11821 ttttttcaaa tcggataaat tgttttccat ttcttttaca ttttttggcg ttgtaaaaga
    11881 tttcaaacgt actttagaac cagattcatc aataacatca atcgctttat ccggtaagaa
    11941 acggtctgaa atgtaccgat cagatagacg aacagcagcc tcaagcgctt catcagtaat
    12001 cgcaacacgg tgatgcgcct cataacgatc acgcaaccca tgtaaaattt gaatggattc
    12061 ttctacagtt ggctcatcta ctttaatcgg ttggaaacgt ctctcaagtg cagcatcttt
    12121 ttcaatatat ttacggtact catccagtgt tgttgcacca atacattgca actcaccacg
    12181 agctagaggc ggcttcaaga tattcgaggc atcaatcgca ccttccgctc caccagcacc
    12241 aattaaggta tgcaattcat caataaatag aataacattg ccggcttgac gaatctcatc
    12301 cattactttt ttcaaacggt cttcaaattc accacgatat tttgtccctg ccacaacagt
    12361 ccccatatcc agtgtcatta cacgttttcc acgtaaagtc tcaggcactt cattacgaac
    12421 aatttgttgc gctagtcctt ctgcaatcgc tgttttacca acaccaggtt ctccaataag
    12481 tactgggtta ttcttcgtac gacgactaag cacttcaatc acacgttgga tttctttaga
    12541 acggccaata accggatcca aattatcttc ccgagcaata actgttaaat cacgtgccaa
    12601 actatctaaa gtcggtgtag cctgtgtatt tgtttgtctt cctgccccag tagcatcccc
    12661 gccgcctaag agctgtaaaa cttgctgacg agctttattc aaactaatac caagattact
    12721 taaaacgcga gccgcaactc cttcgccttc acgaataagc cccagtaaga tatgttctgt
    12781 tccaacataa gtatgcccta atttacgagc ctcatccatg gacagttcaa ttactttttt
    12841 cgcacgaggt gtatattgga tcgtcgtcac agctttttcc ccatgaccaa ttaatccttc
    12901 cacctcttgc tgcacttttt cagaactaat tcccagttca tagagagctt tcgccgcaat
    12961 tccttcgcct tctcttacaa gccctaataa aatatgttct gttcctaaat tactatgatt
    13021 caaacgcatc gcctcttctt gtgacaacgc gagtactttc tgagctcttt gcgtaaatcg
    13081 tccaaacatc attgttgttt cctccttatc gtaagcctca tcatttatcg cccaaaatct
    13141 cgcgaatcac tttggcccgt attactttct cttctaattc atccatatct cgtcctgctt
    13201 ctcttctcaa aaaagctggt tgcgagaata gtaccaattc attcattttt tggcgagaaa
    13261 tatgctcgaa aaatcctaat tctacaccaa gccgtatatc cgatatagca tctgaagctt
    13321 ctttcataga aataattcga caattcatca ataaaccata tgatctaaaa actctatcct
    13381 caagtgcaat atgaaatttt tgctttaatg tagttctagc aacacgctct tgcatgataa
    13441 tttgttccat gacttgcgtt aaatcttcca caatttctgt ttccgtttta ccgagagtta
    13501 cttgatttga gacctggaaa atattacttg caggcatgct accttctccg tatatacctc
    13561 ttaccacaaa acctaggctc ctaatcgctt caatcacact tttaatcctt tttgttgtca
    13621 cgagtcccgg taaatgcacc attacagaag cgcgcatacc agtcccgata ttagtcacac
    13681 aactcgtcaa atatccaaac tctttatcaa aagcataact aagcttctct tccacataac
    13741 catcaatttg caacgctgcc tctaacgcat caaataatct caaacccggc gtcatgcact
    13801 gtatccgcaa atgatcttcc tcattcaaca taatactcac attttcttcc tcatttaaaa
    13861 gaaccgcacc atattcactt ttattcatca tataaggact aattaaatgt ttttccacca
    13921 aaagcgcctt ttgtaacaaa gaaatttgat tcattttaat caaagtaaaa ttatcatcaa
    13981 aaacttcggc aatattatca acaatctctt ccttctgctc ataaactgga aactgttcat
    14041 ccttcaaatt cctagcaagc ctaatacgtg agcttaaaac aacatcatcg tcatcaccag
    14101 cattttctaa ccaagaactc agccgcggtt caaatacatt catttatcct cacctccagc
    14161 tttcaaagcc ttgatttcat cacggacaac agcagcttcc tcaaactcct cattttcaac
    14221 tagctgtgct agcttttctt gtaagcgact aatttcattt tgaacacctt ccgcacgttc
    14281 aacttctgca ggaaccttac caacatgttt tttatatcca ttttgcactc gaccaataat
    14341 cggtactaac tgtgcctcaa aagccgaata acactccggg cacccaactc gattagtctt
    14401 taaaaactct tcaaaactaa gctggcaatt ctcacaaaca atctctttct gcgcattttc
    14461 ttctttttgc aaaagcgtta agaagtcaag agcaacctca ctaaaagtat ccatcgcttt
    14521 aaccaaatct ttttccgaag agagagcttc gtccgtagca caattctcac ataggtacaa
    14581 tgactccact ttcccaagct catttaattg ttgcaaggca ataactgctt tattttctcc
    14641 acatctttga caaatcatcg tcatcacacc ttaatcatat ttcaaagcaa ctaacatcgc
    14701 ctctaaaatc ctacttctca aaatatctct atcgggtaaa ggtaaaatta aaacttccct
    14761 gtccaatgcc gccaccatta atcttgcttc tttcttcgtt attacttctt cttcaagcaa
    14821 tctcaaaata acatcttcag aaaatgattg agagaccttt ttatcatgaa ccattgaaat
    14881 gattgcttct aacaattgaa gtttatcatt cattttcact ttaataatcc taatatagcc
    14941 accaccacca cgtttacttt caacgatata ccctcgttcc attgtaaatc tagtgtttat
    15001 tacataatta atttgtgaag gtacacattc aaacttatct gcaatttcac ttcttttaat
    15061 ttcgactgct tcacttgatt ccaatacttg tttcaaataa gcttctataa catcagaaat
    15121 gtttttcatt ataaggaatc tcctttctgt tttttgcaaa tcattgactt tgactatttt
    15181 tgactttaat tatactagat atccctacct attagcaatt tatttatctt ttac
//
LOCUS       DASEAA010000056        15083 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.056, whole genome shotgun sequence.
ACCESSION   DASEAA010000056 DASEAA010000000
VERSION     DASEAA010000056.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 15083)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 15083)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..15083
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.056"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            81..866
                     /gene="sufC"
                     /locus_tag="U0342_001442"
     CDS             81..866
                     /gene="sufC"
                     /locus_tag="U0342_001442"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly ATPase SufC"
                     /protein_id="HEM2422790.1"
                     /translation="MATLKIQDLHVEIEGKEILKGVNLEISTGEIHAIMGPNGTGKST
                     LSSAIMGHPKYEVTQGTITLDGEDVLEMEVDERARAGLFLAMQYPSEISGVTNAEFIR
                     AAINSRREEGDEIPVMQFIRKLDAKMDILDMDEEMAERYLNEGFSGGEKKRNEILQLL
                     MIEPKLAILDEIDSGLDIDALKVVSKGVNEMRGEGFGCLIITHYQRLLNYITPDFVHV
                     MMQGKVVKEGGPELAKRLEAEGYDWIKQELGIELEEEEAVDQQ"
     gene            885..2186
                     /gene="sufD"
                     /locus_tag="U0342_001443"
     CDS             885..2186
                     /gene="sufD"
                     /locus_tag="U0342_001443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufD"
                     /protein_id="HEM2422791.1"
                     /translation="MAENMTIKDDFIHAFSSNANEPDWFLDIRRNAFKAYGELDLPFV
                     DKTKITRWNFTKFETFIPFKEGVTNETLPEKVANLVDLDNKEANFYVQMDERPARLQL
                     QQELVDQGVIFTDIISAVKNHPELVKKYFMKDAVQVNEHKLTAFHAALVNGGIFLYVP
                     KNVEVKAPIQAVFVQDKAESPLVNHVLLVADDNSAVTYVENYVTVDNAPKGIVSIVEE
                     VIAEKNARITFGGVDNLASDVTTYVNRRGHIGTDSQIEWALGLMNDGDTINENVTNLM
                     GDGSSADVKTVTVGRGKQTQNVTTRVTHYGKASNGTILSHGVMKERATTIFNGIGHIK
                     HGASKSDAQQESRVLMLSPEARGDANPILLIDENDVVAGHAASVGRVDPLQLFYLMSR
                     GISQKEAERLVIHGFLDPVVRQLPIESVKTMLREVIEGKVR"
     gene            2187..3413
                     /locus_tag="U0342_001444"
     CDS             2187..3413
                     /locus_tag="U0342_001444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cysteine desulfurase"
                     /protein_id="HEM2422792.1"
                     /translation="MIDIQKIRADFPILAQEINEKPLAYLDNAATSQKPKQVIEALTH
                     YYEFDNANVHRGVHTLAARATDAYESARGKVAKFIHAREVAEIIFTRGTTSAINLVVD
                     SYAEANIEAGDEIVISYLEHHSNLIPWQQLAKRKGAVLKYIELEEDGTISVEQAKKTI
                     GEKTKIVALAHVSNVLGTITPMKEIAAIAHQFGAVILVDGAQAVPHMEVDVVDLDADF
                     YAFSGHKMMAPTGIGALYGKRELLDAMEPTEFGGEMIDFVELYDSTWKELPWKFEAGT
                     PIIGGAIALGAAIDYLAEVGLANIHAHEQALASYAIEEMSKIEGITIYGPKDASKRCG
                     LVTFNLEGAHPHDIATILDEDGIAIRAGHHCAQPLMKWLDVSSTARASFYIYNTKEEI
                     DALIDGLKLTKEYFGL"
     gene            3410..3853
                     /locus_tag="U0342_001445"
     CDS             3410..3853
                     /locus_tag="U0342_001445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SUF system NifU family Fe-S cluster assembly
                     protein"
                     /protein_id="HEM2422793.1"
                     /translation="MTSRKLDQLYRQVIMDHYKNPRNNGELPDSDVTIDLNNPTCGDQ
                     IHLHLKMDGDKIVAAKFTGSGCSISMASASMMTQSIIGKTEKEALKMSREFSEMVQGH
                     DHETIDEYGDVEALAGVAKFPARIKCATLSWKAMERAIFEKEGTK"
     gene            3876..5270
                     /gene="sufB"
                     /locus_tag="U0342_001446"
     CDS             3876..5270
                     /gene="sufB"
                     /locus_tag="U0342_001446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Fe-S cluster assembly protein SufB"
                     /protein_id="HEM2422794.1"
                     /translation="MTEIPEIGEYQYGFHDKDTSVFRTERGLTEKVVREISNIKEEPE
                     WMLEFRLKSLEQFYKMPMPTWGGDLSELKFEDITYYVKPSEQTVRSWDEVPEEIKRTF
                     DKLGIPEAEQKYLAGASAQYESEVVYHNMKQDLEDLGIVFKDTDSALKENEDIFKEYF
                     AKVIPPSDNKFAALNSAVWSGGSFIYVPPGIKVDTPLQAYFRINSENMGQFERTLIIV
                     DENASVNYVEGCTAPVYTTNSLHSAVVEIIVKPGAYCRYTTIQNWANNVYNLVTKRTF
                     CEENATMEWIDGNIGSKLTMKYPAVHLRGEGARGTTLSIAIAGKGQRQDAGAKMMHYA
                     PNTSSTIVSKSISKQGGNVTYRGIVHFGRNADGARSNIECDTLIMDNLSTSDTIPYNE
                     ILNSNISLEHEAKVSKVSEEQLFYLMSRGLSEEEATEMIVMGFIEPFTKELPMEYAVE
                     MNRLIKFEMEGSIG"
     gene            5405..5719
                     /locus_tag="U0342_001447"
     CDS             5405..5719
                     /locus_tag="U0342_001447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465930.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422795.1"
                     /translation="MTEIKYLEGMYQDPFFPPFLVDKIKQCIFDTVQFLEQGNHDTEA
                     IQAKFDEMTLAINALQDEFYENESELETGARDSIAETIIPILAHYKIDIDIEELLRER
                     EW"
     gene            5861..6703
                     /locus_tag="U0342_001448"
     CDS             5861..6703
                     /locus_tag="U0342_001448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF72 domain-containing protein"
                     /protein_id="HEM2422796.1"
                     /translation="MVTIGLTGWSDHDSLLQSKKLTLADYAAHFPVVEVDTSFYAIPS
                     PRTTANWAAQTPDEFRFVIKAFSAMTKHKEWSQYFDSENAMYTAYMDMIAPISETGKL
                     QAILFQFPPYFNCTKENVTYLKYIASKMGDLPVAIEFRNSSWYNEQNTEKTLELLREL
                     GFIHTVVDEPQVGSGSVPIVLRETNSDMTLVRLHGRNQYGWMKANSPEWREVRTLYRY
                     NEEEINEWAKYVEHLQKLSKEVVVIFNNNSGGDAADNAKHLQKALQVEFQGLAPMQMD
                     LFSE"
     gene            complement(6736..7101)
                     /locus_tag="U0342_001449"
     CDS             complement(6736..7101)
                     /locus_tag="U0342_001449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1634 domain-containing protein"
                     /protein_id="HEM2422797.1"
                     /translation="MAEKKEEMYRVELIVSALLRIGVVLSAIIIVFGLVMLFITGESG
                     YPGETYPTSLTAIFSGLGTLKPYAIMMFGLFCLILTPVLRVVVSLFTFLKEKDYLYVG
                     ITGIVLIILVISFLIGIKA"
     gene            complement(7102..7941)
                     /locus_tag="U0342_001450"
     CDS             complement(7102..7941)
                     /locus_tag="U0342_001450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM2422798.1"
                     /translation="MDITQTVEILLISVFAGVVGSLLGLGGGIIVTPALTLIFGIDIQ
                     YAIGASIISVIATSSGSAIAYIKDGITNLRVGMFLEIATTIGAITGAFVSGLLSATAL
                     YIIFGLLLLYSAFNMIKKVGTEFPTNVKPDPLATKLNLHDSYYDKSLRQTVDYQVANV
                     PAGFGVMYGAGIASGLLGIGSGAFKVMALDVFMKMPLKVSSATSNLMMGVTAAASATV
                     YLFQGDIQPAIAAPVAIGVLVGATLGTRIMQRLKSKVIRIIFIPVILYVAFQMILEGL
                     GWI"
     gene            8077..9465
                     /locus_tag="U0342_001451"
     CDS             8077..9465
                     /locus_tag="U0342_001451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009924752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional metallophosphatase/5'-nucleotidase"
                     /protein_id="HEM2422799.1"
                     /translation="MKHLTLWHTNDVHSHLEHWPRIFNFLKEKRTAADKENQSALFFD
                     IGDFLDRVHPLTEGTNGLANTDLLNQLPYDAVTFGNNEGTTLAHEDLDKLYEHAAFPV
                     VCCNFYANKECTKQSDWVKSIVYKEVEQVKIAIIGATAPFREYYEAMGWGVEEPISAI
                     KKQIAGLDANTDVVILLSHLGLPTDERIALELPEIDIILGGHTHHLLENGKIEGNALL
                     AAAGRWGEHVGKVTIELDENNQIISKKAVTFATEKLPIPPNETAEIQAFFDKGREELS
                     EKVVAIPRKLAHNWFDDSEIAHILNEAVCEWTGAETFVMNAGIFMTDFEAGIVTEFDI
                     HQMLPHPLNAIALTMSGEELEILIDGIYRKKAELQDIPLRGFGFRGEYFGTVLMDRAG
                     FDAENQVALFDNKPIDKTREYRIATHDTFVFAPFFPIVKQIKRKEVYTPELLRDILKW
                     KLKKMYGQEEDK"
     gene            9462..9737
                     /locus_tag="U0342_001452"
     CDS             9462..9737
                     /locus_tag="U0342_001452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YutD family protein"
                     /protein_id="HEM2422800.1"
                     /translation="MTITIQDLNYEIITNYRDAFDEEKLNERFSDILGRYDYIVGDWG
                     YDQLRLKGFFEDDNRKAAYDNKISTLKEYIYEYCNFGCAYFVIKKVK"
     gene            9757..10524
                     /locus_tag="U0342_001453"
     CDS             9757..10524
                     /locus_tag="U0342_001453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01457 family HAD-type hydrolase"
                     /protein_id="HEM2422801.1"
                     /translation="MKNYKAYLIDLDGTMYRGAEVISEAIIFIENLKRAGIPYLFVTN
                     NSTKTPGQVAEHLTDMGIQAVSEDVFTTSQATVQFMIEQKREKSVYVIGERGIKQELT
                     DNGFEITSSNPAFVVVGLDREVNYEKFSKAALAVRGGAMFISTNGDAAIPTERGLLPG
                     NGSITSVVSVATETAPVFIGKPESIIMEQALAKLGVHKDEAIMVGDNYETDIMAGINY
                     GMDTLIVHTGFTSKEALLTKEIQPTYAVTKLTDWKFN"
     gene            10573..11016
                     /locus_tag="U0342_001454"
     CDS             10573..11016
                     /locus_tag="U0342_001454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422802.1"
                     /translation="MVSIQKLTKDNFHETAKLEVHPHQKTFVAENWYSIIEASFEETY
                     HSLVIYAENIPVGYAMYGMDTDDGEFWLVRFMTGKEHQGKGYGGDALEQIIEIVKNLP
                     EKPARLRLSYEPDNTVAEKFYAKYGFEKTGEIIDGEAVADLWFKR"
     gene            11052..12362
                     /locus_tag="U0342_001455"
     CDS             11052..12362
                     /locus_tag="U0342_001455"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465922.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM2422803.1"
                     /translation="MDIFNDFFVIFLIAATAFFVASEFAIVAIRKPTVLQLVASEDPR
                     AKYVKKVTSNMNDYLAACQLGNTLAALAMGWVGEATMRGWLEPLFLMLPVPESVEKPI
                     SIFVSFILITFLNVVLGELAPKTFTIQSTEKVALFIARPLVYWYRLTFPLNWLLNNSA
                     NLITRMFGVKQTVDADQMTPTELKIIFEDSYRQGLLNPQEFRYMKNIFKLGDVPAKEV
                     MIPRMSMIAIDQTATVRDLLKLTSEHTYHIFPVTEDEDKDHIIGMLRVSAVMAGLGKD
                     ETIVTQSIQPFITPVLEVFEGMILEELLVKMQQESEPFVVLTDEYGGTSGIVTLEDVM
                     EVIVGDMEEAKGPKGIRKVALNHYIIEGSEPLLEVEEALGVPIEGPGVHTLSGWMLLE
                     RFDLEAGDEIEHEGYRFIVRSMNKNSIRQVEVKLGKEKPVKLEE"
     gene            complement(12387..12887)
                     /locus_tag="U0342_001456"
     CDS             complement(12387..12887)
                     /locus_tag="U0342_001456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylglycerophosphatase A"
                     /protein_id="HEM2422804.1"
                     /translation="MVEKQSALESKARSWLIERGVEIDDIAELVLFLQQKYHPGLELD
                     ICRQNVEHVLRKREVQNAVLTGIQLDVMAEKGELVQPLQNIISADEGLYGVDEILALS
                     IVNVYGSIGFTNYGYIDKVKPGILAKLNEHDGIAVHTFLDDIVGAIAAAAASRLAHSY
                     HDDIVN"
     gene            complement(13000..13236)
                     /locus_tag="U0342_001457"
     CDS             complement(13000..13236)
                     /locus_tag="U0342_001457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NifU family protein"
                     /protein_id="HEM2422805.1"
                     /translation="MEEISYAEVDKALKKFRPFLVRDGGDYELIEVTQDGVVKIKLLG
                     ACETCPSSDMTLKMGIELTLAEKIIGFKEVVQVF"
     gene            complement(13409..>15083)
                     /locus_tag="U0342_001458"
     CDS             complement(13409..>15083)
                     /locus_tag="U0342_001458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2422806.1"
                     /translation="KVLYLNNNNLTSIDSLNTLRGLTIAYADNNNITDLSNLKDFFEG
                     MDVVGDYKGLQVNNQTITLPTINIKEGGTAISNNPTLDIDGEKMPVSSISDGGTVSTD
                     NKTVSFTNLPVGNKTVTYKATFTATSTKGVPLSYSIKVSQPINVSAQSDSTVNVFYKD
                     ENGDELAPSETISGKSGENYQTIEKTITNYTLKEIEGQPSGQFGDSDATVTYVYEKAD
                     GAPVIVKYVDADGNELATSDTLNGKIDAPYQSTAKSITGWAVKTTPTNATGVFTNANQ
                     TVTYVYEKADGAPVTVKYVDADGNELATSDTLNGKIDAPYQTTAKSLSGWAVKTTPAN
                     ATGVFTNANQTVTYVYEKADGAPVTVKYVDADGNELATSDTLNGKIDAPYQTTAKSLS
                     GWTVKTTPANATGVFTNANQTVTYVYEKADGAPVTVKYVDADGNELATPDTLNGKLDT
                     SYAATAKNLSGWKLTATPANANGVFTTDAQTVTFVYAKQEDNPKKEDKNKTPIKISEN
                     KPTASKVTRIKKQTKLPKTGDNQQDSILFGLIGTCFVLLGIYSISKKNS"
BASE COUNT         4746 a         2670 c         3373 g         4294 t
ORIGIN      
        1 actggttttt atagttgtaa tcagattaga attatactaa actaggatta tgcaaatttt
       61 acactaggga ggactttttt atggcaactt taaagattca agatttacat gttgaaatag
      121 aaggaaaaga aattttgaag ggtgttaacc tggaaatttc aactggcgaa atccacgcta
      181 tcatgggacc gaacggaaca ggtaaatcta cgttgtcctc agctattatg gggcatccaa
      241 aatatgaagt aacacaagga acaatcacgc ttgacgggga agatgtactc gaaatggaag
      301 tagacgaacg cgctcgtgct ggtcttttct tagcgatgca atatccaagt gagattagtg
      361 gtgttacaaa cgctgaattc attcgtgcag caatcaatag ccgccgcgaa gaaggcgacg
      421 aaattccagt aatgcaattc atccgcaaac tagatgccaa aatggatatt ttagatatgg
      481 acgaagaaat ggcggaacgt tatttaaatg aaggattttc aggcggagag aaaaaacgta
      541 atgaaatctt gcaattatta atgatcgagc caaaattagc gattttagat gaaattgact
      601 ctggtcttga tattgatgcg cttaaagttg tctctaaagg tgtaaatgaa atgcgcggcg
      661 aaggattcgg ttgcttaatc attacccatt accaacgttt actgaactac atcacgccag
      721 attttgttca cgtaatgatg caaggtaaag tagtaaaaga aggcggacct gaacttgcga
      781 aacgtttaga agcagaaggt tatgactgga ttaaacaaga gcttggtatc gaacttgagg
      841 aagaagaagc agtagaccaa caataaggaa gtgaggttaa aatcatggca gaaaatatga
      901 cgattaaaga tgattttatc cacgcttttt caagtaatgc gaatgaaccg gattggtttt
      961 tagatatccg tcgcaatgct tttaaagctt acggggaact ggacttgcct tttgtggata
     1021 aaacaaaaat tactcgctgg aatttcacaa agtttgagac gtttatacct tttaaagaag
     1081 gcgtaacgaa tgaaactcta ccggaaaaag tagcgaattt agttgattta gataataaag
     1141 aagccaattt ttacgttcaa atggatgaaa gacctgcgag acttcagttg caacaagaac
     1201 tagttgacca aggcgttatt ttcacagata ttatttcggc tgtgaaaaac catcctgaac
     1261 ttgtgaagaa atatttcatg aaagatgcag ttcaagtgaa tgaacacaaa ctgactgctt
     1321 ttcatgcggc gcttgtgaac ggtgggattt tcctttatgt tcctaaaaat gtcgaagtga
     1381 aagcaccaat tcaagctgtt ttcgtacaag ataaagcgga atctccactt gttaaccatg
     1441 tgttgcttgt ggcggatgat aatagcgcag tcacttatgt ggaaaactac gtaacggtag
     1501 ataacgcacc taaagggatt gttagcattg tggaagaagt aatcgctgag aaaaatgcgc
     1561 gcattacttt tggcggtgta gacaatcttg caagtgatgt tacgacatat gtgaaccgtc
     1621 gtggacacat tggaacagat agccaaattg aatgggcgct tggcctgatg aatgatggcg
     1681 atactatcaa cgagaacgta acaaacctaa tgggtgacgg atcttctgct gatgtgaaaa
     1741 ctgtgacagt tggacgcggg aagcaaacgc aaaacgtgac aacgcgcgtg acacattacg
     1801 gaaaagcttc taatggtacg attttatccc atggtgttat gaaagaaaga gcgacaacta
     1861 tttttaacgg aattggtcac attaaacatg gcgcttctaa gtcagatgca caacaagaat
     1921 cacgtgtact gatgcttagt cctgaagcac gcggtgatgc gaacccaatt ttattaattg
     1981 atgaaaatga cgtagtagca gggcatgcgg cttctgttgg acgcgttgat ccactacaat
     2041 tattctattt gatgagtcgc gggatttctc aaaaagaagc agaaagatta gttattcatg
     2101 gcttcttaga ccctgttgtt cgtcagttac caatcgaaag tgtgaaaacg atgcttcgtg
     2161 aagtaatcga agggaaagtg cgctaaatga ttgatatcca aaaaattcgg gcggattttc
     2221 caattttagc tcaagaaata aatgaaaaac cgctagctta tttagataat gctgccactt
     2281 cacaaaagcc gaaacaagtt attgaagctt taacacatta ctatgagttt gataatgcga
     2341 acgttcaccg cggtgtgcat acacttgcag caagagcgac ggatgcttat gaatcagctc
     2401 gaggtaaagt agccaagttt attcatgcgc gtgaagtagc agaaattatt ttcacaagag
     2461 gtactacttc agcgattaat ttagttgtag atagttacgc ggaagcaaat attgaagcgg
     2521 gcgatgagat tgttatttct tatctagagc atcattccaa tttgattccg tggcaacaac
     2581 tagctaaacg caagggcgcg gttttgaaat atattgagtt agaagaagat ggaacgattt
     2641 ctgtggaaca agcgaaaaaa acgattggtg aaaaaacgaa aatcgttgca ttagctcatg
     2701 tttctaatgt actcgggact atcacgccaa tgaaagaaat cgcagcaatt gctcatcaat
     2761 ttggagcagt cattctcgtt gacggtgcgc aagctgtgcc tcacatggaa gttgatgtag
     2821 ttgatttaga tgctgacttt tatgcttttt cagggcacaa aatgatggct cctactggca
     2881 ttggcgcctt gtatggcaaa cgtgaattgc ttgatgcgat ggaacctacc gaatttggcg
     2941 gagaaatgat tgattttgtt gaattatatg attcgacttg gaaagaactg ccgtggaaat
     3001 ttgaagctgg aacaccgatt attggcggag cgattgcgct aggtgcggcg attgattact
     3061 tggcagaagt cggactcgca aatattcacg cacatgaaca agcattagcc agctacgcga
     3121 tagaagaaat gagcaaaatc gaaggcatta ccatttatgg accaaaagac gcgagtaaac
     3181 gatgtggctt agtgactttc aatttagaag gcgcacaccc acacgatatt gcgactattt
     3241 tggacgaaga cggaattgcg attcgagctg gtcatcactg tgcgcaaccg ttgatgaagt
     3301 ggcttgacgt ttcttccaca gctcgcgcaa gcttttatat ttataataca aaagaagaaa
     3361 ttgatgcgct tatagatggc ctcaagttaa caaaggagta ttttggatta tgacaagccg
     3421 gaaattagat cagctttata gacaagtcat tatggatcac tataaaaatc cgcgcaataa
     3481 tggagagctc ccagatagcg atgtaacaat cgacctcaac aacccaacat gcggtgatca
     3541 aattcatctt catttaaaaa tggatggtga taaaatcgtt gcggcaaaat tcactggtag
     3601 cggctgttcg atttcgatgg cctctgcttc gatgatgacg caaagcatta ttgggaaaac
     3661 cgagaaagag gcactaaaaa tgtcacgtga attttcagaa atggtgcaag gtcatgacca
     3721 tgaaacgatt gatgaatacg gcgacgttga ggcacttgcc ggagttgcga aattcccagc
     3781 aagaatcaaa tgtgcaaccc tttcttggaa agcaatggag agagcgattt ttgaaaaaga
     3841 aggaacaaaa taagtagcga aaaggaggat acgacatgac tgaaattcca gaaattggcg
     3901 aataccaata tggattccat gacaaagata cctctgtgtt ccgtacagaa cgcggattaa
     3961 cagaaaaagt agtaagagaa atttcgaata ttaaagaaga accagaatgg atgcttgaat
     4021 tccgtttgaa gtctttggag caattttata aaatgccaat gccgacttgg ggtggcgacc
     4081 tgtcagaact gaagtttgaa gacatcactt actacgtgaa accgtctgaa caaacagtgc
     4141 gctcttggga tgaagttcct gaagaaatta aacgtacttt tgataaatta ggtattcctg
     4201 aagccgaaca aaaatatttg gctggggcat ctgcgcagta tgaatccgaa gtagtttatc
     4261 acaatatgaa gcaagaccta gaagatttag ggattgtctt caaagataca gattccgcgt
     4321 taaaagaaaa cgaagatatt ttcaaagaat atttcgcaaa agtaattcca ccaagcgaca
     4381 acaaattcgc tgcgctaaac tcggctgttt ggtcaggtgg ctcattcatc tacgtaccac
     4441 caggtatcaa agtagatacg ccacttcaag cctatttccg cattaactcg gaaaacatgg
     4501 gtcaatttga gcggacacta attattgtgg acgaaaatgc cagcgtaaac tacgtagaag
     4561 gctgtactgc tcccgtttat actacgaatt cccttcactc tgctgtcgtg gaaatcattg
     4621 taaaaccagg cgcttactgt cgttacacaa ccatccaaaa ctgggcaaat aacgtttaca
     4681 acctagtaac gaaacgtact ttctgtgaag aaaatgcgac aatggaatgg attgatggca
     4741 acattggttc gaaattaaca atgaaatacc cagctgtaca tttacgaggc gaaggagcac
     4801 gtggaacgac cctttctatc gcgattgctg gtaaaggcca acgtcaagac gctggagcaa
     4861 aaatgatgca ctatgcgccg aatacgtcct ctacgattgt gtcgaagtcg atctcgaaac
     4921 aaggcggaaa cgtaacgtat cgcggaattg ttcattttgg tcgtaatgca gacggtgcac
     4981 gttcgaatat cgaatgtgat acgctgatta tggataacct gtccacatcg gacacaatcc
     5041 cgtacaacga aatcctaaac agtaacattt cattagaaca tgaagccaaa gtttccaaag
     5101 tatccgagga acaacttttc tatctaatga gccgtggttt aagcgaagaa gaagcgacag
     5161 aaatgatcgt tatgggcttc attgaaccat ttacgaaaga attaccaatg gaatatgccg
     5221 ttgagatgaa ccgtttgatt aagtttgaaa tggaaggctc gattggttaa ataaagcaaa
     5281 agacgaactt tttagttcgt ctttttttga tgaaatccaa aaatagcagg gaataaatct
     5341 ggcttgtatt tttataaatg aagtgatata ttggttccaa caatttagca aaggactgat
     5401 aattatgaca gaaattaaat atttagaggg aatgtatcaa gatccattct ttccaccgtt
     5461 tctagtagat aaaattaagc aatgtatttt cgatacggtt caatttttag aacaagggaa
     5521 tcatgataca gaagcgattc aagctaaatt tgatgaaatg acattagcaa ttaatgcatt
     5581 gcaagatgag ttttatgaaa atgagagcga attagaaaca ggagcaaggg attccattgc
     5641 tgaaacaatc atcccgattt tagctcatta taagatagat atcgatattg aagaattact
     5701 tagagagcgc gagtggtaat atatgataaa gacttcaact gctagacagt tgaagttttt
     5761 gttttgtttc gaagtaaaaa cgaggaccaa attaaaggct tctccctcct ttttgcgtta
     5821 taataaacat aaatcataac gatagagagg gtggcagttg atggtaacaa tcgggttaac
     5881 tgggtggagt gatcatgatt ctttattaca atcaaaaaaa ttaacattgg ctgattatgc
     5941 ggcacatttt cctgtggtgg aggttgatac gagtttttat gcgattcctt ctccgcgaac
     6001 aacggcaaac tgggcggcgc aaactccgga tgaatttcgt tttgtgatta aagcattttc
     6061 ggcgatgacg aaacataagg aatggtcgca gtattttgat agtgaaaatg cgatgtatac
     6121 ggcttatatg gatatgattg cgccgataag tgaaacggga aaactacagg caattttatt
     6181 tcaatttccg ccgtatttta attgtacgaa agaaaatgtg acttatttaa aatatattgc
     6241 ttcgaaaatg ggtgatttac cggtggcgat tgaatttcgc aatagttctt ggtataacga
     6301 gcaaaatacc gaaaagacgc tggagttgct gcgagaatta ggttttattc atacggtcgt
     6361 tgatgaaccg caagttggtt ctgggagcgt gccgattgtg ctgcgtgaga cgaatagcga
     6421 tatgacatta gtgcggcttc acggccggaa tcagtatggt tggatgaaag ctaacagtcc
     6481 cgagtggcgc gaggttcgca cgctataccg ttacaatgaa gaggaaatta acgaatgggc
     6541 aaaatatgtg gaacatttac aaaaattgtc caaagaagtt gtcgtgattt ttaataataa
     6601 cagcggcggg gatgcggctg ataatgcgaa acatttacaa aaggcgttac aagttgagtt
     6661 tcaaggcttg gctccgatgc aaatggattt gttttcagaa taaaaaaaga tggcgcatcg
     6721 ctagcgccat cttttttatg cttttatacc aattaaaaag ctaataacta aaataattaa
     6781 tacaatccca gttatcccaa cgtacaaata atctttttct ttcaaaaaag taaataacga
     6841 tacaacgaca cgaaggacgg gcgttaaaat taagcaaaag aggccaaaca tcataatcgc
     6901 gtatggttta agcgtcccta gcccgctgaa aatcgccgta agcgaggttg gataagtttc
     6961 cccaggatag ccactttcgc cggtgataaa tagcataaca agaccgaaaa caataataat
     7021 cgcactgagg acaacaccga ttcgtagcag tgcgctaaca attagctcca cgcggtacat
     7081 ttcttctttt ttctctgcca tttaaatcca ccccaatcct tctaaaatca tttggaaggc
     7141 aacatataaa atgacgggaa taaaaataat ccgaataact ttgcttttta aacgttgcat
     7201 aatgcgcgtt ccaagtgttg caccgacaag tacgccaatc gcaactggag ctgcaatagc
     7261 gggctggatg tcgccttgga aaaggtacac ggttgcactg gcagccgcag ttacgcccat
     7321 cattaaatta ctcgttgcgc tacttacttt tagtggcatt ttcataaaga catcaagtgc
     7381 catgacttta aatgcgccac taccgattcc aagtaagcca ctagcaatac ctgcgccgta
     7441 catcacacca aaaccagcag gaacatttgc cacttgatag tcaactgttt gccgtaaaga
     7501 tttatcgtaa taagaatcat gtaagtttag tttggttgcg agtgggtctg gtttcacatt
     7561 ggtaggaaat tctgtaccga cctttttaat catgttgaaa gcagaataaa gaagtaaaag
     7621 tccgaagatg atgtagagtg ccgtggccga gagcagtccg ctgacgaaag ccccagtgat
     7681 tgcaccaatt gttgtggcaa tttcgagaaa catcccgaca cgaagattgg tgatgccgtc
     7741 tttgatataa gcgatggcag aaccactact tgttgcgatg acggaaataa tactcgcacc
     7801 aatcgcatac tgaatatcaa tcccgaaaat aagagtcaag gcaggcgtca cgataattcc
     7861 gccaccaagc ccgagcaaag agcctactac ccctgcaaaa acagagatta gaagaatttc
     7921 gactgtttgc gtaatatcca aaaaaatcac ttccctttaa aacaatatat cctatcataa
     7981 cataaaatga aaagggaaca attcatccag tcctagtgcg tgtaaaaaaa gctgttttac
     8041 gctacaatag ttataagtag ggagtgagat ggatagatga aacatttaac tttatggcat
     8101 acaaatgatg ttcatagtca cttggaacat tggccacgca tttttaattt cttaaaagag
     8161 aaaagaactg ctgcagataa agaaaatcag tcggcgctct tttttgatat tggtgatttt
     8221 ttggaccggg tccatccgct tactgaagga acgaacgggc ttgcgaatac ggacttactt
     8281 aaccaactgc cgtatgatgc ggtgactttt ggtaataatg aaggaacgac tttggcccat
     8341 gaagacttgg ataaattata tgaacatgcg gccttcccag tagtttgctg taatttttat
     8401 gcgaataaag agtgtacaaa gcagtcggac tgggtgaaat cgattgttta taaagaagta
     8461 gaacaagtga aaattgctat tatcggtgca acggcgccgt ttcgggaata ttacgaggca
     8521 atgggctggg gagtagaaga accaattagc gcgattaaaa agcaaattgc tggcttagac
     8581 gcgaatacag atgtagttat tttactgagt caccttggct tgccgacaga tgaaagaatt
     8641 gctttagaat taccagaaat tgatattata ttaggtgggc atacccatca tttacttgaa
     8701 aatggaaaaa tagaaggaaa tgcattactg gctgctgccg gaagatgggg cgagcatgta
     8761 gggaaagtta ctatcgagct agatgaaaat aatcagatta tctctaaaaa agcagtaact
     8821 ttcgcaaccg aaaaacttcc aatcccacca aatgaaacgg cagaaattca agctttcttc
     8881 gataaaggac gggaggaact ctctgaaaaa gtagttgcga ttcccagaaa gttagcgcat
     8941 aattggtttg atgactcgga aattgcgcac attttgaatg aagcggtttg tgaatggact
     9001 ggggcagaaa catttgtgat gaacgcaggc atttttatga cagactttga agcagggatt
     9061 gtgacggaat ttgatatcca ccaaatgtta cctcatccgc tcaacgcgat tgctttaacg
     9121 atgtctggtg aggagcttga aatacttatt gacggaatct accgaaagaa agctgaactg
     9181 caagatattc cgcttcgagg ttttggtttc cgaggcgagt attttggcac cgttttgatg
     9241 gacagagctg gttttgatgc ggaaaatcaa gtggcacttt ttgataataa accgattgat
     9301 aaaacgcggg aataccggat tgcgacgcat gatacgtttg tgttcgcacc atttttcccg
     9361 atagtaaagc aaattaaacg aaaagaagta tatacaccgg agttactccg agatatttta
     9421 aaatggaaac ttaaaaaaat gtacggacag gaggaagaca agtgacgatt acgattcaag
     9481 atttaaacta cgagattatc accaattatc gcgatgcttt tgacgaggag aagttaaatg
     9541 aacggtttag cgatattctt gggcgatatg attatatagt aggcgactgg ggttacgatc
     9601 aactccgtct caaaggcttt tttgaagacg ataaccgcaa agccgcatac gacaacaaaa
     9661 ttagcacgtt aaaagaatat atttacgaat actgcaattt tggttgtgcg tattttgtta
     9721 ttaaaaaagt aaaatagtaa aagaggtaat taggaattga agaattataa agcgtattta
     9781 attgatttag atggcacgat gtatcgcggg gcagaagtta tttctgaggc gatcattttt
     9841 atcgaaaact taaaacgtgc gggaattccg tatttatttg taacaaacaa ttcaacaaaa
     9901 acacctgggc aagtagcaga acatttaact gacatgggga ttcaagctgt aagtgaggat
     9961 gttttcacga cgtcacaagc aaccgtgcaa tttatgatag aacaaaaacg cgaaaaatcg
    10021 gtttatgtta tcggtgaacg tggaataaaa caagaactaa cagataatgg atttgaaata
    10081 acttctagta atccagcttt tgttgtcgtt gggcttgacc gggaagtcaa ttatgagaaa
    10141 ttttcaaaag cagcgcttgc ggttcgcggt ggagcgatgt ttatttcgac gaatggcgat
    10201 gcggcaattc cgacagagcg tggtttgctt ccgggaaatg gttccatcac atctgtcgtt
    10261 tctgtagcca cagaaacagc gccagttttt attgggaagc ctgaatccat tattatggag
    10321 caagcactcg caaaactcgg tgtccataaa gacgaggcaa tcatggtggg tgacaactac
    10381 gaaaccgata ttatggcggg catcaattat ggcatggata cgttaatcgt acacactggc
    10441 tttacatcaa aagaagcatt attaacgaaa gaaatccaac ctacatacgc tgtaaccaaa
    10501 ctaactgatt ggaaatttaa ctagaagagc ggaatttttc tgctcttttt ttaataaata
    10561 ggaggttaga aaatggtctc aattcaaaag ttaacgaaag acaattttca cgaaacagca
    10621 aaattagaag tgcatccaca ccaaaaaaca tttgtcgcag aaaactggta ttccattatc
    10681 gaagcaagtt ttgaagaaac gtatcattcg cttgtaatat acgcggaaaa tataccggtt
    10741 ggctacgcaa tgtatggaat ggatacagat gatggtgagt tttggttggt acgatttatg
    10801 actgggaaag agcatcaagg taagggctac ggcggagatg cgctagaaca aattatcgag
    10861 atagtgaaaa atctaccaga aaaaccagca cgtctgcgtc tatcttacga accagataat
    10921 acggtagcag agaaatttta tgcaaaatat ggatttgaaa aaacggggga gatcatcgac
    10981 ggcgaggcag tggccgactt gtggttcaaa cgttaaaatc gggtatagaa tggggataag
    11041 gaggatgcta aatggacatt tttaatgatt tctttgtgat atttttaatt gcagcgaccg
    11101 cctttttcgt ggcaagtgaa tttgccattg tcgcaatccg gaaacctact gtcctgcaac
    11161 tagtagcctc agaggacccg cgagcgaaat atgtaaaaaa agttacttcg aatatgaatg
    11221 attatttggc tgcctgtcag ttaggtaata cacttgccgc acttgctatg gggtgggttg
    11281 gtgaagcaac aatgcgtggc tggttggagc cgttattttt aatgttacct gtaccagaat
    11341 ccgttgaaaa gccgatttcg atttttgttt cgtttatttt aattacattc ttaaatgtgg
    11401 tactcgggga acttgctccg aaaacattta caattcaaag cacagaaaaa gtagctctgt
    11461 ttatcgcgcg cccgcttgtg tattggtatc gcctgacttt tccactcaat tggcttttaa
    11521 ataactcggc gaatttaatc acgcggatgt ttggggtaaa acaaacagtt gatgcggacc
    11581 aaatgacacc gaccgaactg aagattattt ttgaagatag ctataggcaa ggacttttga
    11641 atccacaaga gtttcgttat atgaaaaata ttttcaaact cggggacgtg ccagcgaaag
    11701 aagtaatgat accgcgaatg tcaatgattg cgattgacca aacggcgacc gtaagagatt
    11761 tactgaaatt aacttctgaa catacatatc atatttttcc agttacggaa gatgaagata
    11821 aagatcatat tatcggaatg ctacgagtca gtgcggttat ggctggactt ggaaaagatg
    11881 aaacgattgt gacgcaatct attcaaccat ttattacacc tgttttagaa gtgtttgaag
    11941 gcatgatttt ggaagagtta cttgtgaaaa tgcagcaaga aagtgagccg tttgtcgttc
    12001 tcacggatga atacggcggg acttcgggga ttgtgacgct agaagatgtc atggaagtaa
    12061 ttgttggtga tatggaagaa gcaaaaggtc cgaaagggat tcgaaaagta gctttgaatc
    12121 attatattat tgaaggatct gagccgcttc ttgaagtcga ggaagcactg ggggtcccaa
    12181 ttgaagggcc gggtgttcat acgttatcgg gatggatgtt gctcgaacgt tttgacttag
    12241 aagctggtga tgagattgaa catgagggat accgctttat cgttcgttca atgaataaaa
    12301 actcgattcg gcaagtagaa gtaaaattag ggaaagaaaa accagtaaaa ttggaggaat
    12361 aagcctcttg ttttactggt ttttgtttaa ttaacgatgt cgtcgtgata actatgcgca
    12421 agccgacttg cagcggccgc agcgatagcg ccaacaatat catcgagaaa tgtgtgaacg
    12481 gcgataccat cgtgttcatt taattttgca agaatacctg gttttacttt atcgatataa
    12541 ccgtaattgg taaatccaat agatccgtac acattgacga tggagagcgc aagtatctcg
    12601 tcgacgccgt acagcccctc atcagcgcta atgatatttt gtagtggttg gacgagttct
    12661 cctttttcag ccatcacatc aagctgtatg cctgttaaaa ctgcattttg aacttcacgc
    12721 ttgcgaagaa catgctccac attttgacgg caaatatcta attccaatcc gggatgatat
    12781 ttttgttgta aaaataatac aagttctgcg atatcatcaa tttctacgcc ccgttcgatg
    12841 agccaactgc gtgcttttga ttctaaggca ctttgttttt ctaccatttt ttcttacctc
    12901 cttctaactg tatgtatatt gtatgataga cgtttacagg atttctaaac ctttttatac
    12961 aaaaatagcg accgattgtt tggtcgctaa aatatttgtt taaaaaacct gaacaacttc
    13021 tttaaagcca ataatttttt ctgctaaagt taattcgata cccattttta aagtcatatc
    13081 agaactgggg caagtctcgc atgcaccaag tagtttaatt tttacgacac cgtcttgtgt
    13141 gacttcgata agttcatagt ccccgccatc acgaactaaa aacggacgga acttttttaa
    13201 agctttatca acttcggcgt agctaatttc ttccatagga tatagttctc ctttcgtgag
    13261 gcattgttat attttctatt ataacaggat atggggaaat ttaaagaaat taaattgggt
    13321 tttctgaggt tggaagtagt gcaatatgaa gtaattacca aacaaaaact ctcttatcca
    13381 attgataaga gagttttagc tatttatttt agctgttttt cttagagata gagtaaattc
    13441 ctaagagaac gaaacatgta ccaattaatc caaacaatat actatcttgt tgattatcac
    13501 cagttttcgg taattttgtt tgttttttga ttctagttac tttgcttgct gttggtttgt
    13561 tttcgctgat tttaataggt gttttgtttt tatcctcttt tttaggattg tcttcttgtt
    13621 tagcatatac aaaggtgact gtttgagcat cagttgtaaa tacgccatta gcgttggctg
    13681 gtgtggctgt tagcttccaa ccactcaagt ttttagctgt tgccgcgtaa gatgtatcta
    13741 gcttaccgtt caatgtatct ggagtagcta attcgttgcc gtccgcgtcg acgtatttca
    13801 cggtaacagg agcgccgtcc gctttttcat acacataagt gaccgtttgg ttagcgtttg
    13861 tgaatacgcc cgttgcgttg gcaggagtcg ttttgactgt ccaaccagaa agacttttag
    13921 cggtagtttg ataaggagca tcaattttgc cgttcagtgt gtcggaagta gctaattcgt
    13981 tgccatccgc gtcgacatat ttcacggtaa caggagcgcc gtccgctttt tcatagacat
    14041 aagtgaccgt ttggttagcg tttgtgaata cgcccgttgc gttggcagga gtcgttttga
    14101 ctgcccaacc agaaagactt ttagcggtag tttgataagg agcatcaatt ttgccgttca
    14161 gtgtgtcgga agtagctaat tcgttgccat ccgcgtcgac atatttcacg gtaacaggag
    14221 cgccgtctgc tttttcatag acataagtga ccgtttggtt agcgtttgtg aatacgcccg
    14281 ttgcgttggt tggagtcgtt ttgactgccc aaccagtgat gcttttggct gtagattgat
    14341 aaggagcatc aattttgccg ttcagtgtgt cggaagtagc taattcgtta ccatccgcgt
    14401 cgacatattt cacgataaca ggagcgccgt ccgctttttc gtaaacgtaa gtgactgttg
    14461 catcactatc gccaaattgt cctgaaggct ggccttcaat ttcttttaat gtgtagttag
    14521 taattgtttt ttctattgtt tgataatttt ctccggattt accagaaatt gtttcacttg
    14581 gagctaattc atcgccattt tcatctttgt aaaatacgtt tactgttgaa tcggattgtg
    14641 cagatacatt aattggttgc gatactttaa tagaataact aagtggtact cctttagtgg
    14701 aggtagctgt gaatgttgct ttataagtaa cagtcttatt tccaactggt aagttagtaa
    14761 aagaaacggt tttattatcg gtagatactg ttccgccatc agaaatgcta gaaacaggca
    14821 ttttttcgcc atcaatatct aaagtagggt tatttgaaat agctgttcca ccttctttga
    14881 tattaatagt tggaagtgtg atagtttggt tgttaacttg taaaccttta taatctccaa
    14941 cgacatccat gccttcaaaa aagtctttta aattactcaa atcagtaatg ttattattat
    15001 cagcataggc tatagttaat cctcttagtg tatttaaaga atcaatggaa gttaggttgt
    15061 tattgtttaa ataaaggact tta
//
LOCUS       DASEAA010000057        14865 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.057, whole genome shotgun sequence.
ACCESSION   DASEAA010000057 DASEAA010000000
VERSION     DASEAA010000057.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14865)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14865)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14865
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.057"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(83..910)
                     /locus_tag="U0342_001459"
     CDS             complement(83..910)
                     /locus_tag="U0342_001459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2422807.1"
                     /translation="MANVAIDTVITDMDGTLLVKKGDQIHPLNKEVLMEWQKNGKKLF
                     LATGRLDLAILPFIHELNIKTPVISCNGGLVRDFTTGEILYKSNIELDLIHTVLETLE
                     PLDVNYHIYTTERILGPTNTGKIAFFNELNKTLPENEQVPITLTTDPFSVLREGEFPL
                     KVLVIESDLEKRAEIKAALEGLPLSVLASASNLIDIMNEGIDKAKGLTYLAENGYINL
                     DSTIAFGDNENDVGMIELAEIGVAMENGIPLALEKADKIAKHHDIGGLGLFMQEEIL"
     gene            1025..1900
                     /locus_tag="U0342_001460"
     CDS             1025..1900
                     /locus_tag="U0342_001460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2422808.1"
                     /translation="MKKYFITIMILLFGALFLSACQKDDEVENSSPPKVDLKNEIPII
                     LIHGSGGDTHSLDEMADHLMNEYKSSNEAMSMSINSKGKITYQGKLTKDAKRPIIKFG
                     FDQNQATPDDWSKWLKIAMEDLKSRYGFTQMDGVGHSNGGLALTYFAEDYSNDNAVPT
                     LRKLVAIGSPFNDLDPDDNGEDLAFNKLPSNTPQLDYFIDKETKISTDLEVLSIAGAL
                     SEDNLTDGIVPTNSSLASRLFMPNNAKVYMEDLQVGESAIHQTLHETSESIEKTHWFL
                     EKSSPEKKEIKLISK"
     gene            1911..2204
                     /locus_tag="U0342_001461"
     CDS             1911..2204
                     /locus_tag="U0342_001461"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2422809.1"
                     /translation="MLHIQAKVQVKPDLVAEFLVEVNLVIQGSLSETENHGYELVHSV
                     ENANIFYILEKWTDEAAIQFHNGTEHYKRFKKNVPAFLAMPIEVDLLAPVERR"
     gene            complement(2120..2359)
                     /locus_tag="U0342_001462"
     CDS             complement(2120..2359)
                     /locus_tag="U0342_001462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422810.1"
                     /translation="MDGEQTIESLEVEEIVYEQIIRTKEGYTNTGKFIFTKTKMMLVA
                     KKFLLKKYYRRSTGASKSTSIGIAKKAGTFFLKRL"
     gene            complement(2428..3096)
                     /locus_tag="U0342_001463"
     CDS             complement(2428..3096)
                     /locus_tag="U0342_001463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466103.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2422811.1"
                     /translation="MTLMMKNISKNYQDGEQVIEVLKNVSLEVAQGEFVAIVGPSGAG
                     KSTFLSIAGALLSPTEGEIAIGGKVLNDLTSKELTKVRLDKVGFIFQGANLIPYLNVR
                     DQLLVIAELSGEKGRGAKEKADELLKELGLTARENNYPESLSGGEKQRVAIARALMND
                     PDIILADEPTASLDANRGHKVVQMIANEVKRKNKAAIMVTHDERVLDLVDRVIRIEDG
                     YLKD"
     gene            complement(3096..4184)
                     /locus_tag="U0342_001464"
     CDS             complement(3096..4184)
                     /locus_tag="U0342_001464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422812.1"
                     /translation="MFLALRELKHAKLRYILIGLIMVLIAWLVLFVTGLANGLANDNG
                     AAISSNKATYYVLQKDSDNRLTRSNLTASETDSVAKQVKKSESTNLGVQMGTITPPNK
                     DKKTDITYFGIDKTGFMKPAITEGTEPEKTKEVVADISLKESGYKLGSKLKDSATGEE
                     FTITAFTKNNTFSHSPVIFVGWDAWKLVHQTNQAAEGEYNAVALDVSESTAKNLSLGS
                     MELSSSKEVLQGIPGYSEEQGSLLMMIAFLFVIAAFVLAAFFYVITIQKINQFGILKA
                     VGARTAYLGRSIVTQVVFLSVVSLLIGNGLTFGLAAILPASMPFTLSPVLAIGCSALF
                     LVVAVIGSMLSLYRVAKVDALEAIGRAN"
     gene            complement(4263..5642)
                     /locus_tag="U0342_001465"
     CDS             complement(4263..5642)
                     /locus_tag="U0342_001465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM2422813.1"
                     /translation="MKSLYSRIVVTMLVVIISSSLLGFFFANIYYQIKLKPFNDEKTA
                     KIAEEVQQFYESNATISLNEYLENVGELGYELYLTDGAEKSTYYGGAFRKKDLPDKTI
                     KQVLDGETYHGIDSFDTGIFITGFFDNDVRNTIGVPVQADGKQLALFIRQDPEKQFGE
                     LRIFFAMILIFTSIISILLVLISGRYIVKPVVKLTNATKKIRKGNYDVAFEVRRKDEI
                     GQLADSFTKMASELKKSEASRQEFVANVSHELQSPLTSMQGFARLLGSGTLTEKEQAE
                     YLTVLSEETTRLSSLTKQLLTLASLDQESELRKKEPVHLDEQWRQLIQMTEWSWREKE
                     LTINLDLADVNYTGDAELLYQVWSNLLTNAIKFTPQGGNIKVHLYEKATYVFVEVQDS
                     GVGIGKEDMAKIFDRFYKANESRTREEGSSGLGLSICQKIITLHHGEITVQSSPEKGT
                     TFKVKLPKN"
     gene            complement(5639..6316)
                     /locus_tag="U0342_001466"
     CDS             complement(5639..6316)
                     /locus_tag="U0342_001466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2422814.1"
                     /translation="MKQILVVDDDRHILKLVGHYLRAEGFRVLEASDGVEAEKIVETE
                     QVHLAVIDVMMPNMDGFELCKKMRTSYPDIPVIMLTAKDALADKSRGFEVGTDDYVTK
                     PFEPEELIFRIRALLRRSNQASEVKINIGNITIDQKSYGIKIGNQERMIPVKEFELLY
                     QLASYPGRIFTREELIERIWQRDYDGSDRTVDVHIKRLRDHFDEEKDGIRIVTVRGVG
                     YKLEETT"
     gene            complement(6363..7148)
                     /gene="fdhD"
                     /locus_tag="U0342_001467"
     CDS             complement(6363..7148)
                     /gene="fdhD"
                     /locus_tag="U0342_001467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase accessory
                     sulfurtransferase FdhD"
                     /protein_id="HEM2422815.1"
                     /translation="MDIVSHQKIRRFEAGTFQEIESSVATEYPLTIYVNDQELVTIVC
                     TPEYLEDLVVGFLTSEGIVRGPQDIDSVDIIEATGHAKVSANFVNKFNAKYRGKRYIT
                     SCCGKSRENFYFQSDASLVNVKQNGSLQLTTDMIFRLMENFEQNSATFHQTGGVHNAA
                     LCSSAEIIYSRMDIGRHNALDKIYGRALQDGTSTEDKAIIFSGRISSEILVKTAKLGC
                     GIILSRSAPTELAINMAEELNITTVGFIRGDRLNVYSGFERIT"
     gene            complement(7210..7686)
                     /locus_tag="U0342_001468"
     CDS             complement(7210..7686)
                     /locus_tag="U0342_001468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1641 domain-containing protein"
                     /protein_id="HEM2422816.1"
                     /translation="MAEPISTIRDTKKTPEELEHERLEQMKADIAEQDSGFVEIVETV
                     KLLQESGALEALNSAIKARGDITKTFLNEWRKEPMTNAINNMMISSKLLTDTKPEQTE
                     EMIANLKNAAKKAEESAKKDEIMGMLAMMKALKDPDINRALRYGVTFLKEVGQTLK"
     gene            complement(7686..10673)
                     /gene="fdhF"
                     /locus_tag="U0342_001469"
     CDS             complement(7686..10673)
                     /gene="fdhF"
                     /locus_tag="U0342_001469"
                     /EC_number="1.17.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate dehydrogenase subunit alpha"
                     /protein_id="HEM2422817.1"
                     /translation="MGAKVSVQINGVARDVVEGTRILDYLNAEGIQHPHICYSEQIGP
                     IQSCDTCMCEVDGELVRACSTNLTDGMEIKTNSELAKDAQLEAMDRILENHLLYCTVC
                     DNNNGNCKVHNTTELLGVEKQERPYREKGYLNDFSHPFYRYDPDQCILCGRCVEACQQ
                     VQVNETLSIDWERSQPRVIWDDDRPANLSSCVSCGLCATVCPCNALMEKSMLGQAGFM
                     TGLDEDMLEPMIDMVKKVEPNYQTVFAVSEMEAAMRETRTKKTKTVCTFCGVGCTFEV
                     WTKDRKILKVEPTGEGPVNKFATCVKGKFGWDFVNSEKRITTPLIREGNEFVPASWED
                     AIHLVATKLREIQAKYGNDSIGFISSSKTTNEENYLMQKLARQVFETNNIDNCSRYCQ
                     APASDGLTRTVGIGADSGTVEDIETAGLVIIVGASPADGHPVLASRIKRAQKTRGQKL
                     IVSDLRKHEMAERSDLFMHPKQGTDFVWLTAVAKYMIDQGWHDEAFMENRISNVADYL
                     SFLEPFTLEYAEKETGLSVETLKKVAQMVYEADGTAVCWGMGVTQNIAGSHTSSAIAN
                     LLLVTGNFGRHGAGAYPLRGHNNVQGACDMGSLPNVLPGIQPLGNDEVRARFEEAYGV
                     SISPEPGLKNNEMLDAIEAGTLHSMYVIGEEMAWVDSNSNHVQEILASLDFFVVQDVF
                     LSKTAQFADVVFPAAPSLEKEGTFTNTERRVQRLYEVLEPLGDSKPDWWIIQEVAKAC
                     GKTDWNYDHPSEIMDEIASLAPFFAGVRYDRMQGFNSLVWPVSADGKDMPLLYEERFN
                     FPDGKAQFSTLPYIAPITFPEEYNLTLNNGRLLEQFHEGNLTDKSKGLDYKLPEVFVE
                     VSHELAKERDLESGSLVRLSSPYGRIKLRAVVTERMKGNEVYVPMHSVSSETAVNLLT
                     SSAGDVRTKTPAYKQTKVNLTVLEKTGKNPLPDHNPRNRKRFPQNGAEVARKWSREDY
                     QPISKVNCACGGNCGCGGKRRNH"
     misc_binding    10853..11101
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            11171..12013
                     /locus_tag="U0342_001470"
     CDS             11171..12013
                     /locus_tag="U0342_001470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S-adenosyl-l-methionine hydroxide
                     adenosyltransferase family protein"
                     /protein_id="HEM2422818.1"
                     /translation="MTKQLLVLQSDFGISDGAVSAMYGVINSVSLDLQIYDLTHQIPQ
                     FNIWEASYRLLQTVTYWPEDTIFVSIVDPGVGSKRRSVAVLTEDGHYIITPDNGTLTH
                     IAHYGTIKEVRLIDEEKNRLPKSGASHTFHGRDIFAYTAARLAAGVINFEDIGPSATP
                     DSIVSLSLSDSYLEGEQAFGTIDIIDRPFGNLWTNIRRTDFLQLGANYGDSIEVLIKH
                     HDRVVYKNFVTYSRSFADLRIGEALIYVNSLDNLGLGINQGSFVDAYSVGTGTSWKVT
                     LKKV"
     gene            complement(12063..13544)
                     /locus_tag="U0342_001471"
     CDS             complement(12063..13544)
                     /locus_tag="U0342_001471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter"
                     /protein_id="HEM2422819.1"
                     /translation="MNSTAVERPVDVNGKSYSRSLLVVTMIIGAFVAILNQTLLATAL
                     PMIMDDLHITAATGQWLTTAFLLTNGIMIPITALLIEKISSKTLFITAMTVFTIGTII
                     ASVAGSFPVLLTGRIVQAAGAGIMMPLLQTIFLLIFPREKRGAAMGLMGLVIAFAPAI
                     GPTLSGWIVDSYDWRVLFLILIPIAVIDIILAFFGMKKVVKLTDTKIDFLSIVMSSIG
                     FGSLLYGFSSAGNDGWGDATVITMLIVGVVVIALFVWRQLVIDNPMLELHVFKYPVFS
                     LSVILGSIVTMAMIGAEIVLPLYIQTIRGESALQSGLLLLPGAIIMGIMSPITGIIFD
                     KIGAKWLTITGVTILTIGTIPFMFLTMDTPLWYIVVFYAVRFFGISMAMMPVSTAGMN
                     ALPNHLINHGSAVNNTIRQIAGSIGTAVLITVLTNVTKDNMPGKALMATDPASFAQKA
                     QDASLDGMRAAFMVAAIFAAIGMILSLFLKTKKQEPIVKEYTK"
     gene            complement(13645..14532)
                     /locus_tag="U0342_001472"
     CDS             complement(13645..14532)
                     /locus_tag="U0342_001472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2422820.1"
                     /translation="MKEKKQRIIKSAKEVFQKQGYLKTSVQDMVDAAGISKGTFYNYF
                     TSKEELAIVIFKQEYSVLHQRLEYTMGLDGTKKDNFTECLKIIIHFYTENGEILNITF
                     SQTMIDDDFNAFLQNVRLKNMEWVKNQLLEVYGKETEPYINDITMLLSGMAAMYVFAS
                     GSKNVDSGLIERAIPYVVRRLDALVKDILESGEIVFTEADTENLVPDQTMIRKKRLAK
                     LRGALEELNVGIENADIDDSDKWQYKESMNALVGEINNNEAPRDFMVQGTLLYLKQHV
                     PASLTKEVNKLEACVNGLL"
     gene            complement(14685..14757)
                     /locus_tag="U0342_001473"
     tRNA            complement(14685..14757)
                     /locus_tag="U0342_001473"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14722..14724),aa:Thr,seq:ggt)
     gene            complement(14782..14857)
                     /locus_tag="U0342_001474"
     tRNA            complement(14782..14857)
                     /locus_tag="U0342_001474"
                     /product="tRNA-Asn"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(14822..14824),aa:Asn,seq:gtt)
BASE COUNT         4282 a         3435 c         2573 g         4575 t
ORIGIN      
        1 agcctaattt aagtgatttt tattccattc tcattttttt atgtcagtac attagtgaaa
       61 taatatctaa tagttctttt tcttataaaa tttcttcttg cataaataac cctagcccgc
      121 cgatatcatg atgctttgcg attttatctg ctttttctaa agctagcgga atgccattct
      181 ccattgctac accaatttcg gctaattcaa tcataccgac atcattttca ttatccccaa
      241 aagcaattgt tgaatcaaga ttaatgtaac cattttccgc aagataagtg agaccttttg
      301 ccttatcaat tccttcattc ataatatcaa ttaaattcga ggcagacgca agaacagaaa
      361 gtggcaagcc ttctaaagct gctttgattt ctgctcgttt ttctaaatct gattcaatta
      421 cgagtacttt tagtgggaat tcaccttccc gaagcacgct gaatggatcc gtagttaaag
      481 taattggaac ttgttcattt tccggtaaag ttttatttaa ttcattgaaa aaggcgattt
      541 tgcctgtatt ggttggtccg agaattcgct ccgttgtata aatatgataa ttaacgtcca
      601 gcggttcaag cgtttctaat accgtatgta tcaaatccag ttcaatatta cttttatata
      661 aaatctctcc agtagtaaaa tcgcgtacta atccgccatt acaagaaatg actggcgttt
      721 tgatattgag ctcgtggata aatggtaaaa ttgctaaatc cagtcgcccc gttgcaagga
      781 aaagtttttt tccgtttttt tgccattcca ttaaaacttc tttgttgagg ggatgaattt
      841 gatcaccttt ttttactagt aatgttccgt ccatatctgt aataactgta tcaatcgcta
      901 catttgccaa tagttttcgc acccttctaa atttccgtta ttatgtacct cgattataga
      961 cgagtttcgc atgattgtca cgccgatatt tggtatacta aatgggaatg gaggacgata
     1021 attagtgaag aaatatttta taacaatcat gattttactt tttggcgcgt tatttctcag
     1081 tgcttgtcaa aaagatgacg aggttgaaaa ttcttctcct cctaaagtag acttaaaaaa
     1141 cgaaataccc attattttaa ttcatgggag cggtggcgat acacattctt tagatgaaat
     1201 ggcagatcac ttaatgaatg aatacaaaag ttctaatgaa gcaatgtcaa tgtcaattaa
     1261 ctcaaaagga aaaatcacat accaaggcaa gctaacaaaa gatgccaaac gtcccattat
     1321 caaatttggc ttcgaccaaa accaagcaac tccagatgat tggtctaaat ggttaaaaat
     1381 cgcaatggaa gatttgaagt cacgttacgg tttcacacaa atggacggag ttggtcattc
     1441 taacggcggc ttggctttaa cttattttgc agaagactac tctaatgaca acgctgtccc
     1501 tactctgcgc aaattagttg ctattggctc tccttttaat gatttggacc cagacgataa
     1561 tggcgaagat ttagctttta ataaattacc atccaacacc cctcaactag attattttat
     1621 tgacaaggag actaaaatta gtactgacct agaagtacta tccattgctg gagctcttag
     1681 tgaagataat ttaaccgatg gtattgtccc aacgaatagt tcactcgctt ccagactttt
     1741 catgcctaat aacgcaaaag tctatatgga agatttacaa gttggtgaaa gtgctattca
     1801 ccaaacattg catgaaacat ctgaaagtat cgaaaagaca cattggttct tagagaaatc
     1861 gagccccgaa aaaaaagaaa ttaaattaat ttctaaatag gaggaataat atgctacata
     1921 tacaagcaaa agtccaagtt aaacctgatt tagtagcgga attcttggtg gaagtgaatt
     1981 tagtaatcca aggctcgctt tcagaaaccg aaaatcatgg ctacgaattg gttcactctg
     2041 tagaaaacgc aaatattttc tatattctag aaaagtggac tgatgaagca gcaattcagt
     2101 ttcataacgg gacagagcat tataaacgtt tcaaaaaaaa tgtccccgct tttttagcaa
     2161 tgccgattga ggtggattta cttgcgccag ttgagcgacg atagtatttt tttaacaaga
     2221 atttttttgc aactaacatc attttcgtct tagtaaagat aaacttacct gtattagtat
     2281 agccttcttt tgtgcggatt atttgttcat acactatctc ctctacttca agtgattcta
     2341 ttgtttgctc gccgtccaca ttaaatgggt tcccacttta gaaaataagc aaaaaggatt
     2401 ggctcgcata cgcgagccaa tcctttttta atccttcaaa tagccatctt caatccgaat
     2461 tacgcggtca actaagtcta aaactcgttc atcatgcgta accatgatgg cagctttatt
     2521 ttttcgtttt acttcattcg caatcatttg gactactttg tgaccacggt tcgcatctaa
     2581 gcttgcggtt ggttcgtccg ctaaaataat atcggggtcg ttcatcagtg ctctagcaat
     2641 agcgacacgt tgtttttcac cacccgataa actttccggg taattgtttt cgcgagcagt
     2701 taaacctaat tctttaagta attcatctgc tttttctttc gcaccccgcc ctttttcacc
     2761 agatagttcc gcaattacga gtaactgatc acggacattt aagtacggga ttaggttcgc
     2821 accttggaaa atgaatccta ctttgtcgag ccgcactttt gttaattctt tgcttgtaag
     2881 gtcatttaac acttttccac ctatagcaat ttctccttct gttggggata ataaggcgcc
     2941 tgcgatagat aaaaatgtac ttttcccggc gcctgaaggt ccaacgattg caacgaattc
     3001 tccttgcgcc acttctaaag atacattttt caatacttcg atgacttgct cgccatcctg
     3061 ataattttta gaaatatttt tcatcattaa agtcattagt ttgccctccc aattgcttct
     3121 aacgcgtcta cttttgctac acgatagagt gataacatcg atccaatgac tgctacaaca
     3181 aggaataagg cagaacagcc gattgcaagt accgggctaa gtgtaaatgg catgctcgcc
     3241 ggtaaaattg ctgcaagacc gaatgttaag ccattaccaa ttaacaaact gacaactgat
     3301 aggaaaacaa cttgggtaac gatacttcgg cctaaatagg ctgttcgtgc gccaactgct
     3361 tttaaaatcc caaattggtt gattttttga atcgtaatga cgtaaaagaa agcagctaga
     3421 acaaatgcgg cgatgacgaa caaaaaggca atcatcatca gtagcgatcc ttgttcttct
     3481 gagtagccag ggataccttg aagcacttct ttactagacg aaagttccat ggagccgagt
     3541 gataggtttt tagctgtgct ttcagaaaca tctagcgcta cggcgttata ttctccttct
     3601 gctgcttggt tcgtttgatg cactaatttc caagcatccc agccgacgaa tataaccggc
     3661 gaatggctaa atgtgttatt tttggtgaag gcggtaatcg tgaactcttc tcctgttgcg
     3721 ctatctttga gtttgctgcc taatttataa ccagactctt ttaaagaaat atcggctact
     3781 acttcttttg ttttctctgg ctctgttcct tctgtgatgg ccggtttcat gaagcctgtt
     3841 ttatctatac cgaaataagt aatgtctgtt tttttatctt tgttgggtgg tgtgatcgtg
     3901 cccatttgca cgcccaggtt ggtgctttct gattttttca cttgcttcgc tacgctgtct
     3961 gtttcggacg cggttaaatt ggacctcgtt aagcgattat ccgagtcttt ttgtaaaaca
     4021 taataagttg ctttattgga tgaaatggct gccccattgt cgtttgcaag tccattcgca
     4081 agtcccgtta caaacaaaac aagccatgcg attaacacca taattaatcc aattagaata
     4141 tagcgtaatt ttgcgtgttt taattctctt aatgccaaaa acattccgtt caactccttc
     4201 taagatctta tccttagttt aaagaagttt tgtaaacgga atgtgaatcg gattttacaa
     4261 atttagtttt ttggtagttt gactttgaat gtcgtgcctt tttcggggct actttgcacg
     4321 gttatttcgc cgtgatggag cgtgataatt ttctggcaaa tggataatcc gaggccactc
     4381 gagccttctt ctcgggttcg gctttcgtta gctttataaa aacggtcaaa aatcttggcc
     4441 atatcctcct tacctatgcc gacaccgcta tcttgaactt ctacaaaaac atacgtcgct
     4501 ttttcataaa ggtggacttt gatattcccg ccctgtggtg tgaacttaat cgcattagtt
     4561 aacaaattgg accacacttg ataaagtaat tcagcatcac ccgtatagtt tacatctgct
     4621 aagtctaaat ttattgttag ttctttttcg cgccaactcc actcggtcat ttggattaat
     4681 tgacgccact gctcgtctaa gtgaactggc tctttttttc gcaactctga ttcttggtca
     4741 agtgaagcga gtgtgagtag ttgtttggtt aaggaagata gacgtgttgt ctcctctgat
     4801 aacacggtta aatattcggc ttgttctttt tcggttagtg ttccagaacc taaaagtctc
     4861 gcaaagcctt gcatggatgt gagcggagat tgtagttcat gagaaacatt ggcgacaaat
     4921 tcttgacggg aagcttcaga ttttttgagt tcactagcca ttttcgtaaa cgagtctgcc
     4981 aactgcccaa tttcatcctt acgccgaact tcaaaggcta catcataatt gcctttacgt
     5041 atttttttcg tcgcattcgt caacttcacg acaggtttga caatatatct gccactaata
     5101 agaaccaaca gaatactgat gatggatgtg aaaataagta tcatcgcgaa aaatattcga
     5161 agttccccaa attgtttttc cgggtcttgg cgtatgaata gcgctagttg tttaccatca
     5221 gcttggaccg ggacaccaat ggtatttcgc acatcattat caaaaaagcc tgtgatgaaa
     5281 atgcctgtat caaacgaatc aattccatga tatgtctctc cgtccagtac ttgcttgatt
     5341 gtcttatccg gtaaatcttt tttccgaaaa gcgccaccat aataagtgga tttttccgcg
     5401 ccatctgtca aatataattc gtatcccagt tcgcccacat tttccaagta ctcgtttaaa
     5461 gaaatcgtag catttgactc ataaaattgt tggacttcct ccgctatttt ggcagttttt
     5521 tcgtcattaa aaggttttaa ttttatttgg taataaatgt ttgcaaagaa aaagccgagc
     5581 aaactactgg aaataatgac gacaagcatc gtgacaacta ttcgactata taacgatttc
     5641 atgttgtctc ctccaattta taaccaacgc cgcgcaccgt aacaattcga ataccatcct
     5701 tttcttcatc aaaatggtcc cgcaatcgtt taatatgtac atccactgta cggtcactac
     5761 catcataatc acgttgccaa atccgctcaa ttaattcttc tcgagtaaaa atccggccag
     5821 gatagcttgc tagctgatat aaaagctcaa attctttcac gggaatcatt cgttcttggt
     5881 tgccaatttt tataccatag cttttttgat cgatagtaat atttccgata ttaattttga
     5941 cttcgctcgc ttgattagaa cgccgtagca acgcacgaat tcgaaagatt agctcttctg
     6001 gttcaaaggg ttttgtgaca taatcatctg ttcccacttc aaaaccgcgt gatttatccg
     6061 ccagcgcatc tttggctgtc aacataataa cagggatatc aggataactt gtgcgcattt
     6121 ttttgcaaag ttcaaaacca tccatgttgg gcatcatcac atcaattaca gctaaatgaa
     6181 cttgctctgt ttcaactatt ttttctgctt ctaccccatc gcttgcctca agtacacgga
     6241 agccttctgc acgcaaatag tggcccacaa gtttaagtat atgccgatca tcatctacta
     6301 ctaatatttg tttcattttc accgctcacc ttactgtcct attttactgc atcatatcaa
     6361 acttacgtga ttcgttcaaa tccagaatag acatttaacc tatcaccacg aataaagcca
     6421 acggttgtaa tatttaattc ttcggccata ttaatcgcca gttcggttgg ggcagaacga
     6481 gacaaaataa ttccgcaacc tagttttgct gttttaacga ggatttccga agaaatgcgc
     6541 ccactaaaaa taattgcctt atcttcagtg gatgttccgt cttgcaaggc acggccatat
     6601 attttatcta aggcattatg gcgacctatg tccatcctgc tgtatataat ttccgctgaa
     6661 ctacatagag ccgcattatg cacaccccca gtttgatgga atgtagcaga attttgttca
     6721 aaattttcca ttaagcggaa aatcatgtcg gttgttagtt gtagacttcc attttgcttc
     6781 acattgacga gtgaggcgtc tgattggaag tagaagtttt cccgagactt gccgcaacac
     6841 gaggtaatgt agcgcttgcc gcgatacttg gcattgaatt tgttcacaaa attagcgcta
     6901 accttggcgt gtccagtcgc ttcgatgata tccacggaat cgatgtcttg aggaccccga
     6961 acgatgcctt ccgatgtcag aaagcccaca actaaatctt ccagatattc tggcgtgcag
     7021 acgatggtca cgagttcttg gtcgttaacg tagatagtta gcggatactc ggtcgcaaca
     7081 cttgattcaa tttcttgaaa agtgcccgct tcaaaacgac ggattttttg gtgcgaaaca
     7141 atatccatca aaaaccactc ctctctaaac tgaaacagcg acacatctta gtctcgctgt
     7201 ttcgtctact tattttaatg tttgcccaac ttcttttaaa aaggtcacac cataccggag
     7261 tgcgcggttg atatcggggt ctttcagcgc cttcatcatc gctaacatgc ccatgatttc
     7321 gtcttttttc gcgctttctt ctgctttttt cgcagcattt ttcaaattag ctatcatttc
     7381 ctcggtttgc tctggttttg tatcagtcaa tagcttactt gaaatcatca tgttattaat
     7441 cgcattcgtc atcggttcct tacgccattc attcagaaac gttttcgtaa tatccccgcg
     7501 cgctttaatc gcactattca aagcttcaag tgcccccgat tcctgtagta actttaccgt
     7561 ttctactatc tctacaaaac cagaatcttg ttcagcaata tccgctttca tttgttctaa
     7621 acgttcatgt tccaattctt ccggggtctt ttttgtatca cgaatcgttg aaattggttc
     7681 tgccatcagt gattcctcct tttcccacca cacccgcagt taccaccaca agcgcagttc
     7741 actttagaaa tcggttgata atcttctctc gaccatttgc gcgctacctc agccccattt
     7801 tgcgggaatc ttttacgatt acgtggattg tggtctggaa gtgggttttt ccctgttttt
     7861 tcaagtacag tgaggttcac ttttgtttgt ttatatgccg gtgttttcgt ccgaacatct
     7921 cccgcgcttg aagtcagtaa gttgaccgcg gtttcgctac tcacagaatg cattggcaca
     7981 tagacctcat tccctttcat ccgctcagtc acaacggcac gaagcttgat gcggccataa
     8041 ggcgaactta gacgaacgag cgaaccactt tctaaatcgc gttctttggc taattcatgt
     8101 gatacctcta caaacacttc cggtaattta taatccaacc ctttcgactt atctgtcaaa
     8161 ttcccctcat ggaactgctc caataaacgc ccattattca gcgttaaatt atattcttct
     8221 gggaaagtaa tcggtgcaat atacggtaac gtcgaaaatt gcgctttgcc gtccggaaaa
     8281 ttaaatcgtt cttcataaag taacggcata tccttcccat ccgcgctcac tggccataca
     8341 aggctgttaa atccttgcat ccggtcataa cgaacccctg caaaaaatgg tgctaaacta
     8401 gcaatttcgt ccataatctc gctcggatga tcataattcc agtccgtttt gccacacgct
     8461 ttcgcaactt cttgaataat ccaccagtct ggcttcgaat ctccaagcgg ctctaacacc
     8521 tcataaagtc gttgaacacg gcgctctgta ttggtaaatg ttccttcttt ttcaagagaa
     8581 ggagctgctg ggaaaacaac atctgcaaat tgtgctgttt ttgataagaa cacatcttga
     8641 acaacaaaga aatcaaggct cgcaaggatt tcttgcacat gatttgagtt agagtccacc
     8701 caggccattt cctcaccaat aacatacata gaatgaagtg ttcccgcctc aatagcatca
     8761 agcatttcat tgtttttcag ccctggttct ggtgaaattg ataccccata agcttcttca
     8821 aaacgagcac gaacctcatc atttccaagc ggttgaattc caggaagaac gttaggtagt
     8881 gaccccatat cgcaagcacc ttgcacatta ttatgccctc taagcggata agcgcccgca
     8941 ccgtgtcttc cgaagttccc agttacaaga agtaggttag cgatagcaga cgatgtatgt
     9001 gatccagcaa tattttgcgt aactcccatt ccccaacaaa ccgctgtccc gtctgcttca
     9061 taaaccatct gcgccacttt tttcaatgtt tctactgata gtcctgtttc tttttccgca
     9121 tattccaatg taaatggttc taaaaatgat agataatctg ctacattgct aatcctattt
     9181 tccataaagg cttcatcgtg ccatccttga tcaatcatat atttcgcaac cgctgttaac
     9241 caaacaaaat cggttccttg ttttggatgc atgaataaat cagaacgctc tgccatttcg
     9301 tgttttcgta aatcagaaac aatcagcttt tgaccgcgtg tcttctgagc tcgcttgatt
     9361 ctgctagcaa ggactggatg accatcggct ggtgatgcgc caacaataat gacaagtccg
     9421 gccgtttcaa tatcttccac tgtccccgaa tccgcgccaa tcccaactgt ccgagtcagc
     9481 ccatccgaag caggcgcctg acaataacgt gaacaattat caatattatt cgtttcaaaa
     9541 acctgccgcg ccaatttttg catcaaatag ttctcttcat tggttgtttt agaagaacta
     9601 ataaatccaa tagaatcatt tccatattta gcctgaattt ctcgcagttt ggtcgcaact
     9661 agatgaatcg catcttccca gctcgccggc acaaattcat taccctcgcg aatgagcggc
     9721 gtcgtaatcc gtttctcact attgacaaaa tcccaaccaa atttcccttt cacacacgta
     9781 gcaaatttgt tcacaggacc ttctccggtt ggctcgactt tcaaaatttt gcgatccttc
     9841 gtccacacct caaacgtaca accaaccccg cagaaagtac aaactgtctt cgttttcttc
     9901 gtccgcgttt cccgcatcgc tgcttccatt tccgacacag caaagacggt ttgataattc
     9961 ggctcgactt ttttcaccat atcaatcatc ggttctagca tatcttcgtc taagccagtc
    10021 ataaagccag cttggccaag cattgatttt tccatcaacg cgttacaagg acacaccgtc
    10081 gcacacagcc cacaagaaac acaggacgat aaattcgctg gacgatcatc atcccaaata
    10141 acccttggct gactacgttc ccaatcaatc gaaagtgttt cattcacttg tacttgctga
    10201 cacgcctcca cacagcgccc acaaagaata cattgatccg gatcataacg ataaaacgga
    10261 tgcgaaaaat cattcaaata gcctttttcg cggtaaggac gttcttgttt ttccacacca
    10321 agcagttccg tcgtattatg tactttgcaa ttaccgttat tgttatcaca aaccgtacaa
    10381 tacaataaat gattttccaa aatcctgtcc atcgcttcta attgcgcatc tttcgctaat
    10441 tcagaattag ttttaatttc catcccgtct gtcagattcg tgctgcacgc ccgcacaagt
    10501 tccccatcaa cctcgcacat acacgtatca caagattgaa ttggtccaat ttgctcacta
    10561 taacaaatat gcggatgctg tattccttct gcatttaaat agtccagtat tcgcgttcct
    10621 tccaccacat cccgcgccac gccattaatt tgcaccgata cttttgcgcc catcacatta
    10681 cctcctatat agagaaagcg tttacaattt ccgcttatat tataacagtt cttacttaaa
    10741 aatcacagta atacggcaat tgataatcgt tctcaaacac tgctactatg cgatttctct
    10801 cacaaggcta acgaattcat tgacacttat ccaacttttc tgtattcttt attacaaagc
    10861 tacgacgaga aaagtacgac gtccgttttt tccaaaagag agttcccact gctgaaaagg
    10921 aacaaaaaac aacgtccgaa aatggcctct gagttttgtc gctgaaaata agtaagcaac
    10981 aacgggtttg gtgtccgtta tcaagcaccc taagtatttt atgtaaatgc ttatttgagg
    11041 ttttcagtgc aagctggaaa taaattaagg tggtaccgcg tgaaattttc tcgcccttat
    11101 tccaagatat ttttttggat aagggcgagt tttattttac cctaaattgc tcgaaatgga
    11161 ggatttcaaa atgacaaaac aactacttgt tttacaatct gattttggta ttagtgatgg
    11221 tgcagttagc gccatgtacg gcgtgattaa tagcgttagc ctagatttgc aaatatacga
    11281 tttaacgcat caaattcctc aatttaatat ttgggaagca tcgtatcgtt tactccaaac
    11341 ggttacttat tggcccgaag ataccatttt tgtttcgatt gttgatcctg gagttggttc
    11401 gaagcgtcga agtgtcgccg ttttaacaga agatggtcat tatattatta caccagacaa
    11461 cggaacctta acccatatcg cgcattacgg aacaattaaa gaagttcgac tgatagatga
    11521 agaaaaaaat cgcctaccaa aatcaggtgc atcccataca tttcacggtc gagatatttt
    11581 cgcttatacc gcggctaggc tcgcagccgg ggtgattaat tttgaagata tcggtccatc
    11641 agctacccca gactccattg tttctctaag tctaagtgac tcctacttag aaggcgagca
    11701 agcttttggc acaattgata ttattgaccg tccattcggt aatctttgga caaatattcg
    11761 ccgaactgat ttcttgcagc taggtgctaa ctatggcgat tccatcgaag tcctcatcaa
    11821 acaccacgac cgagtagttt ataagaattt cgttacttat agccgctcat ttgccgactt
    11881 acggattggc gaagcgctca tctacgtcaa ttcactcgac aacctcggac taggtatcaa
    11941 tcaagggtcc ttcgtagacg cttattcagt cggcaccggc accagctgga aagtcaccct
    12001 taaaaaagta taaaaaacag ggtcaaacat ccaaattgga agtttgaccc tgtttcattt
    12061 ttttatttcg tatattcttt gacgattggc tcttgttttt tggttttcag gaataaactt
    12121 aagatcatcc caatagccgc aaaaatcgct gcaaccataa acgccgcacg cattccgtcc
    12181 aaactagcat cttgcgcttt ttgagcaaaa ctagcaggat ccgttgccat aagcgcttta
    12241 cctggcatat tatctttcgt tacattcgtt agcactgtaa taagtaccgc cgtcccaatc
    12301 gaaccagcaa tttgtcgaat cgtattattt accgccgaac cgtggttaat caaatggtta
    12361 ggaagtgcat tcatacccgc tgtcgaaact ggcatcatcg ccattgaaat cccgaagaac
    12421 ctcacagcat aaaatacaac aatataccaa agcggcgtat ccatcgttaa gaacataaat
    12481 ggaattgtac cgatagtcaa aatggtaacc ccggtaatcg tcaaccattt cgccccaatt
    12541 ttatcgaaaa taatacccgt aattggactc attatcccca taataatcgc acccggaagt
    12601 aataacagac ctgattgaag cgccgactcc ccgcgaattg tttgaatata taaaggcaat
    12661 acaatttccg caccaatcat tgccatcgtt acaatcgaac caagaataac agacaatgaa
    12721 aatactggat atttaaacac atgtagttca agcattggat tatcaataac tagttggcgc
    12781 caaacaaata atgcaataac aacgacacca acaatcaaca tcgtgataac cgttgcatct
    12841 ccccaaccat cattacctgc tgaactaaat ccataaagga gtgaaccaaa accaattgaa
    12901 gacattacaa tggaaagaaa atcgattttt gtatcagtta attttactac ttttttcatt
    12961 ccaaagaacg ctagaattat atcgataacc gcgattggaa ttaaaataag gaataatacg
    13021 cgccaatcat acgaatccac aatccaacca gacaaagttg gcccaattgc tggagcaaac
    13081 gcaataacaa gtcccatcag ccccatcgct gccccacgtt tttcacgagg gaaaatcagc
    13141 aagaagattg tttgaagcaa cggcatcata atccccgcac cagctgcttg aacgatacga
    13201 ccagtaagta gtaccgggaa agaacccgcc actgacgcaa taatggtacc aattgtaaat
    13261 actgtcatcg ctgtaataaa taaagttttt gaactaattt tttcaattaa aagtgccgta
    13321 atcggaatca taatcccatt tgttagcaag aaagccgtcg tcaaccattg ccctgttgct
    13381 gctgtaatat gcaaatcatc cataatcatc ggcagtgccg tcgctagtaa cgtctgattc
    13441 aagatcgcca caaacgcccc aataatcatt gtaactacta ataaacttct actataagat
    13501 ttcccgttaa catcaacggg ccgttctact gctgtactat tcaaaattaa taccccttcc
    13561 catgtggaaa tttccagatg aataatagaa gtataataaa aaaagaccaa caagtcaaca
    13621 aaaagtgact ggtcagtcta attattataa aagcccgttc acacaagctt ctaatttatt
    13681 tacctctttg gtcaaacttg ctggtacatg ttgtttaaga tacaacaatg ttccttgaac
    13741 catgaaatct ctaggcgcct cattattgtt aatctcccca acaagcgcgt tcatggattc
    13801 cttatactgc catttatccg agtcatcaat atccgcattt tcaatcccga catttaactc
    13861 ctccagcgcg ccccgcagtt tagctagtct tttctttcta atcatagttt gatccggcac
    13921 cagattttct gtgtccgctt ccgtaaacac aatctctccg ctctccaaaa tatccttcac
    13981 aagtgcatca agccttctca ccacataagg aatagcccgc tcaatcaatc ctgaatcaac
    14041 attcttgcta ccactagcaa agacatacat tgccgccatc ccgctaagca acatcgtaat
    14101 atcatttata taaggctccg tttccttccc ataaacctct aacaactgat ttttaaccca
    14161 ttccatattc ttaagtcgca cattctgcaa gaacgcatta aaatcatcat caatcatcgt
    14221 ctgagaaaac gtaatattca agatctcccc attttccgta taaaaatgaa taataatttt
    14281 caagcactcc gtaaaattat ccttcttcgt cccatctagc cccatcgtat actccaaacg
    14341 ctgatgcaat acagaatact cctgcttaaa aatcacaatt gccagttcct ctttcgaagt
    14401 aaaataatta taaaaagtcc ctttagaaat cccagctgca tcaaccatat cttgtacaga
    14461 cgtcttcaaa tacccttgtt tttgaaacac ctctttagcc gacttaataa tccgctgctt
    14521 cttctccttc aaaaaaacac cccacccgtt ctgttattat acccatagta taatcgattt
    14581 atactaccta ttcaagatat ccataataaa tatcattatt cttttaaaca ataaaaaaag
    14641 cctcgcatac tagcgaaaca tacaaattat ccatatatta tttaagccac ttgtcggatt
    14701 tgaaccgacg accccttcct taccatggaa gtgctctacc aactgagcta aagcggcagc
    14761 aaagcctttc aaataaaaaa atggctccac aggcaggact cgaacctgcg accgatcggt
    14821 taacagccga ttgctctacc aactgagcta ctgtggaata ataaa
//
LOCUS       DASEAA010000058        14568 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.058, whole genome shotgun sequence.
ACCESSION   DASEAA010000058 DASEAA010000000
VERSION     DASEAA010000058.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14568)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14568)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14568
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.058"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(19..777)
                     /locus_tag="U0342_001475"
     CDS             complement(19..777)
                     /locus_tag="U0342_001475"
                     /EC_number="4.2.1.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I 3-dehydroquinate dehydratase"
                     /protein_id="HEM2422821.1"
                     /translation="MNKVVVKNVTFGEGAPKICVPMVGKTVAALKEEAEMLQTIDLDV
                     VEWRVDFFEDVKDLAKVEAALDEIRTILPETPILFTFRSAKEGGELAVGDEFYFELNE
                     TLASTGKIDLVDVELFNEEADVLRLIETAHKNNVKVVMSNHDFDKTPAKEEIVSRLTR
                     MEALGADLPKIAVMPKSAGDVLTLLDATNTVSEKANQPIITMSMAGTGVISRLAGEVF
                     GSAMTFGAAKKASAPGQIDVNELRHVLDLLHKQF"
     gene            complement(843..1718)
                     /locus_tag="U0342_001476"
     CDS             complement(843..1718)
                     /locus_tag="U0342_001476"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM2422822.1"
                     /translation="MTNKITERITGHTELIGLIATPIRHSLSPTMHNEAFAKLGLDYV
                     YLAFEVGDKELKDVVQGFRAMNLRGWNVSMPNKTNIHKYLDKLSPAAELVGAVNTVVN
                     DDGVLTGHITDGTGYMRALKEAGHDIIGKKMTICGAGGAATAICIQAALDGVKEISIF
                     NRKDDFYANAEKTVEKINSKTDCKAQLFDIEDHEQLRKEIAESVIFTNATGVGMKPFE
                     GETLLPSADMLRPELIVSDVVYKPTKTRLLEIAEEQGCQTLNGLGMMLWQGAKAFEIW
                     THKEMPVDYIKEILF"
     gene            complement(1818..3812)
                     /locus_tag="U0342_001477"
     CDS             complement(1818..3812)
                     /locus_tag="U0342_001477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM2422823.1"
                     /translation="MTDYPSIFEPLTVKRMTIKNRVIMPPMGTNLAGLNGEFLEEHMN
                     YYEQRAKGGTGLITIENACVDFPYGTNGTTQLRIDNDQYIPGFYKLTERLHKHGTCVS
                     IQINHAGASAYPARLNGLQPVSASDIPSKKGGTVPRPLTVEEIYEIVNKYGDAARRAQ
                     QAGFDAVEIHGGHSYLLCQFLSPLYNKRTDEFGGSPENRARIVKLILEKVRAEVGPFF
                     PIVLRFSADEFTEGGNHLEDILELLDYCQEEADILNVSAAINDNLYLQIDQMNLEDGW
                     RSYLAKAVKDKFNKPTITSGNIRSPKAAEKILSEGYADLLAMGRGLIAEPNWVNKVAT
                     GQEDMLRKCISCNIGCADHRISKSKPIRCTVNPDIIHEDKYKETKVTRPTNVVVIGGG
                     TAGLEAACTAAEVGCNTTLIEASEQTGGLARAIANLPDKSRIADFPNYLANRAEKLTN
                     LKVITGTKADTALIDTFNPDVVVNATGSKPLLPPIKGLHDVIDKEGSKVHSIFGLISN
                     IDDFTEFSNKKVAVIGGGAVGLDVVEYFSERGSDVTIVEMMPLLGKDLDMITRLSMMD
                     IIEKNNVDVQTETALTEVAADHFKVKHDGVDAEIPFDYGFVCLGMRPERPLMEELAAY
                     GKEKQIEIVNIGDSAATRKILEGVREGRNILTTLEKIGSL"
     gene            4010..4903
                     /locus_tag="U0342_001478"
     CDS             4010..4903
                     /locus_tag="U0342_001478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2422824.1"
                     /translation="MNLRQLYYFKKLAEKEHYTIAAAELSITQPSLSHSIAELERELG
                     VYLFEKQGRNIRLTKYGRFYLTYVEKSLAELEKGEKLLHELTSPSHGNIDLGFIYTMG
                     AHTVPELVQNFTKVESHKDITFSFFQGATKSIIPDLKNEKFDLAICSYVENEPDIEFL
                     PLTKQELVVVVAENHPLAKHDSIDLKDTADYSYIFFSDTSGLRPLIDSLFAEINIQPK
                     IGCYVEEDTAMVGLVSVDYGISIMPKISSLAHYNVKVLSINEPKHDRFIYLASLKNHY
                     ISPASKAFKDFALRYGKKHFL"
     gene            complement(4940..5668)
                     /locus_tag="U0342_001479"
     CDS             complement(4940..5668)
                     /locus_tag="U0342_001479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2422825.1"
                     /translation="MTEEFVNKEDALKNYNAKEFRTPDGYTSDMILTTVKELNGKPTL
                     HILLIKRSLTNAEGKPNMEGGKWAVPGGFVDENESADQAAARELEEETSLTGIPLIPF
                     GVFDKPGRDPRGWIISRAFYAIVPPEALEKRAAGDDAADIGLFSMTEALELPLAFDHL
                     DMLKKAYSAITEEFLLTTAIRDFLPETFSAELLYQTLDGCTKPGILPDEVEFMENIEY
                     LPYLEKVGELYRFNADAEAGSIYF"
     gene            complement(5760..5930)
                     /gene="rpmF"
                     /locus_tag="U0342_001480"
     CDS             complement(5760..5930)
                     /gene="rpmF"
                     /locus_tag="U0342_001480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L32"
                     /protein_id="HEM2422826.1"
                     /translation="MAVPARRTSKAKKNKRRTHKGLTTPGLSRDSETGEYRMSHRISP
                     DGTYKGRTILEK"
     gene            complement(5995..6570)
                     /locus_tag="U0342_001481"
     CDS             complement(5995..6570)
                     /locus_tag="U0342_001481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM2422827.1"
                     /translation="MIEKTIKERRSIKKANDAPISRETVNTILEQAAYAPFHSKVEPW
                     NVYVLHTLAEKERYIEKIIEFNEREQGVSFSEAEIADLKAGYAKKIITPPYLLIVTTN
                     IIGHGKKDFESIGATSAFIQNIQLLGWEAGIGMIWRSNRFIFDAKFAEDLGIPSEQKI
                     VGTLHLTSLAEVPEAKPRRPLNEWVKNLADL"
     gene            complement(6804..7181)
                     /locus_tag="U0342_001482"
     CDS             complement(6804..7181)
                     /locus_tag="U0342_001482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422828.1"
                     /translation="MKNTVHDSEILSYHADFENSQLIMFVKDEENRKYKVIFEGLLTF
                     CFEHQMSNSIILDIVKGEVSSFISEKSILLSEGKNYFWPLDYESEDELLNYLNEKKLN
                     YYELQASYGLNGWILCSHYHIEL"
     gene            complement(7194..8495)
                     /locus_tag="U0342_001483"
     CDS             complement(7194..8495)
                     /locus_tag="U0342_001483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
                     /protein_id="HEM2422829.1"
                     /translation="MSRIDIGEIQDFAFQLRAANQTGRKIIQGVKTTVTNYVEDGSLK
                     GKAVEASKNYFQMTYIPLCDTIIEAMNESEERLKRYIQDFHDQVDLSPNAKIDADGLY
                     ELGQMIDRIESKKEALYQRMNSSTEGQMQTYRSQLATAYKQENILEKYLAFEQSHGAF
                     FDHLTDLVQGIQQTVRELQSNIQFDSQTGSYDLSKLNFATVNRMRKTLGKASATDTTV
                     YNFASYSKVKQGVMWILSKDGKVDIKATEAYNTASFNGELPKESKQATEEGELLKATL
                     ESLKQNKDPITGQEISKAQSFGILTSLVFGYTTKGYQGKKLTISKNTLIKLRQADKTV
                     IERIKKTSRIDYEEIVKKGSKMPKHIIVENKQSLPGKAMPSSSADLLNPDGSVKQRRY
                     YDEKGRAKEDIDFNHSDDGTHEFPHRHEWDWDRKPPRKPSK"
     gene            complement(8492..8860)
                     /locus_tag="U0342_001484"
     CDS             complement(8492..8860)
                     /locus_tag="U0342_001484"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA double-strand break repair Rad50 ATPase"
                     /protein_id="HEM2422830.1"
                     /translation="MDSNNEKLKQQLQTLQKQQKDAELSLYMLKHEQNERIWLEEDFE
                     RICYEERESLELMREVWQGDQARNFGYYLEDLQADEKNKWCQTFQAEEEKRQEKINTY
                     QKNIYQLESKQQDIQKELFQ"
     gene            complement(8988..9353)
                     /gene="isdG"
                     /locus_tag="U0342_001485"
     CDS             complement(8988..9353)
                     /gene="isdG"
                     /locus_tag="U0342_001485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme oxygenase IsdG"
                     /protein_id="HEM2422831.1"
                     /translation="MIIVTNTIKVEKGAAEHVIRQFTGANGDGHPTKDIAEVEGFLGF
                     ELWHSKPEDKDYEEVVVTSKWESEEAQRNWVKSDSFKKAHGRTKDTREQREDRKGIVG
                     NAIARFEVVHVQNPVIVEK"
     gene            complement(9511..9990)
                     /locus_tag="U0342_001486"
     CDS             complement(9511..9990)
                     /locus_tag="U0342_001486"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AraC family transcriptional regulator"
                     /protein_id="HEM2422832.1"
                     /translation="MEVEIVERNAFTAVGKKRTFSVENDAQKEKISQFWQEANTNGDA
                     ERINELAEFATIDGILGVCKMNGDKMDYYIAIESELTPPADMEKLIIPASKWAIFKSV
                     GPLPSAIQKVWEYIYGEWFQTSNYAHGNAPELEVYTEGDTTAADYYSEVWIPVVEKE"
     gene            complement(10080..11183)
                     /gene="rlmN"
                     /locus_tag="U0342_001487"
     CDS             complement(10080..11183)
                     /gene="rlmN"
                     /locus_tag="U0342_001487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (adenine(2503)-C(2))-methyltransferase
                     RlmN"
                     /protein_id="HEM2422833.1"
                     /translation="MEKSSIYGLTWTKLTEWLEAHGQKKFRATQVWDWLYRKRVKTFE
                     EMSNVPKETIELLTANFVMNTLEEQVVQESTDGTTKYLFKLSDGNLIETVMMKQEYGL
                     SVCVTTQVGCNIGCTFCASGLLKKSRDLTAGEIVEQIMNVQHYLDGRNLEERVSHVVV
                     MGIGEPFDNYDNVMDFLRVINHDKGLAIGARHITVSTSGLAPRIIDFANEDFQVNLAI
                     SLHAPNNELRTSIMRINKTYSIEKLMEAIHYYVNKTNRRITFEYIMLKGVNDHKKEAL
                     ELAALLGEHRHLAYVNLIPYNPVDEHIDYERSTKEDVLAFYDTLKKNGINCVIRREHG
                     TDIDAACGQLRSKQIKRVGVRERMKQKQAAAEE"
     gene            complement(11334..13034)
                     /locus_tag="U0342_001488"
     CDS             complement(11334..13034)
                     /locus_tag="U0342_001488"
                     /EC_number="4.2.1.53"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oleate hydratase"
                     /protein_id="HEM2422834.1"
                     /translation="MKNKKRTLVALTGAAIGTGIAAKKISEQKAAEKERAVDEAIKAR
                     YYGDKQVYFVGGGIASLAGAVYLIRDANFDGKNIHIIEGMHILGGSNDGAGSVEHGFV
                     CRGGRMLNEETYENFWDLFSSIPSLDMPNFSVTEEILNFDHLHPTHAQARLVDKDRNI
                     LDAHSMGFNNNDRMLMTKLLATPEEKLDNLTIRDWFDEHFFETNFWFMWQTTFAFQKW
                     SSLFEFRRYMNRMMLEFSRIDTLEGVTRTPLNQYESLILPLKTFLDKHHVDFTINQTV
                     EDIDFKDAPGITATALHLSDGSTIKLGPDDDVIMTNACMTDSATLGDMNTPAPKPEEK
                     PISGELWYKVAQKKPNLGNPEPFFAHEEETNWQSFTVTCHGDKLLKRIERFTGNIPGS
                     GALMTFKDSNWLMSTVVAAQPHFKAQDANTTIFWGYGLYPDRVGDFVKKPMKECTGEE
                     ILYELMCHLNWQDDFEEIKADIINVIPCYMPYIDAQFEPRAMSDRPAVVPEGSTNFAM
                     ISQFVEIPKDMVFTEEYSVRAARIAVYTLLDIDKKICPVTPHNRDPKVLAKATQTMFR
                     "
     gene            complement(13144..13704)
                     /locus_tag="U0342_001489"
     CDS             complement(13144..13704)
                     /locus_tag="U0342_001489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2422835.1"
                     /translation="MAESLITKKAIAGGLMELCQHKRFEKISIADITNICGLNRQTFY
                     YHFTDKYDLLTWTYENDFFHCLADGITLENWDKHVLKMLESIKENADLYKNTVSADAS
                     ILSFCFSKLTNSLFMDLFEKIDTNGAVNEADRVFYAEFFSYGCSGVLIKWITRGFKEA
                     PEMIANQLFRLAKDTEFLANSMYREN"
     gene            complement(13956..14315)
                     /locus_tag="U0342_001490"
     CDS             complement(13956..14315)
                     /locus_tag="U0342_001490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3139 domain-containing protein"
                     /protein_id="HEM2422836.1"
                     /translation="MKKYKKWWITIGIVLILCVIGYVYWFVIPKHTANKAVDNYLAEQ
                     KIKSNQIETRVIKKDWKMGGYLTKIVFKDDPNLKYEYSYDERYEFPHHIYVLVFKDGS
                     SQEDDQVKHPPLQEQND"
BASE COUNT         3896 a         3154 c         2531 g         4987 t
ORIGIN      
        1 ctactttttt agtatttatt aaaattgttt atgcagtaaa tcaagaacgt gacgtaactc
       61 attaacatca atttgcccag gagccgatgc ttttttcgca gcgccaaatg tcattgcaga
      121 gccaaatact tcgccagcaa gacggctgat gacaccagtt ccagccattg acatcgtaat
      181 gattggttga ttagcttttt cagatacagt attcgttgca tctagtaaag ttagtacgtc
      241 tccagcagat tttggcatga cggcgatttt cggaaggtcc gcgccaagtg cttccatgcg
      301 agttaatcga gaaacgattt cttccttcgc aggtgtttta tcaaaatcat gattcgacat
      361 aactactttt acattgtttt tgtgggctgt ttcgattaaa cgtaaaacat ccgcttcttc
      421 attgaaaagt tccacgtcaa ctaaatcaat tttgccagtg ctagctagtg tttcatttaa
      481 ttcaaaataa aattcgtcac cgacagctaa ctcgccgccc tcttttgcac tgcggaaagt
      541 gaataaaatc ggtgtttctg gtaaaattgt gcgaatttca tctagcgcag cttccacttt
      601 agctaaatct ttgacgtctt caaaaaagtc aacgcgccat tcgacaacgt ccaaatcgat
      661 tgtttgtaac atttctgctt cttctttaag cgcagcaacc gttttaccga ccattggtac
      721 acaaattttt ggcgcacctt caccaaacgt aacattcttt acgactactt tattcatgta
      781 taattctcct cattcgatat tatgtcttaa gattagcgat aaccttgttc ttttgcaagt
      841 ttttaaaata ggatttcttt aatgtaatca actggcattt ctttgtgtgt ccaaatttcg
      901 aaagctttcg caccttgcca aagcatcatg cctaagccgt taagtgtttg acagccttgt
      961 tcttcagcga tttcaagcaa tctagtttta gttggtttgt agacaacatc cgaaacgatt
     1021 aattctggac gaagcatatc ggcacttggt aaaagtgttt cgccttcgaa aggtttcatc
     1081 ccaacgccag tcgcgttcgt gaaaataaca ctttctgcga tttctttacg taattgttcg
     1141 tggtcttcga tatcaaataa ttgtgcttta caatctgttt tcgaattgat tttttctact
     1201 gttttttctg cattcgcgta aaaatcgtct tttctgttga aaatagaaat ttcttttacg
     1261 ccgtcaagag cagcttggat acaaatagct gttgccgcac caccagcgcc gcaaatcgtc
     1321 atttttttgc cgataatatc atgtccagct tcttttaacg cacgcatata accagtgccg
     1381 tctgtaatgt gtccagttaa cacgccgtca tcattaacaa ctgtatttac tgcccctaca
     1441 agttcagctg ctggagaaag tttatctaaa tatttatgga tatttgtttt atttggcatg
     1501 gaaacgttcc agccgcgtaa gttcattgcg cggaatcctt gtacaacatc tttcagttct
     1561 ttgtctccaa cttcaaaagc aaggtataca taatcaagcc cgagttttgc aaaagcttca
     1621 ttatgcattg ttggtgataa actgtgtctg attggagtgg cgattaaacc gattaattct
     1681 gtgtgtcctg taattctttc tgtgattttg tttgtcataa taacatcgtt cctttccaaa
     1741 ttaaggttta tttgtgaaaa tgtgaactta tataaagagc gaatgtggca agacggactc
     1801 cgccttgcca gttcggatta caaagagcca attttttcta atgtagttaa aatatttctt
     1861 ccttcgcgaa cgccttccaa gatttttctt gtcgcagcgc tgtcgccaat atttacgatt
     1921 tcaatttgtt tttcttttcc gtatgccgca agttcttcca taagtgggcg ttctggtcgc
     1981 attcctaggc agacaaagcc gtaatcaaat ggaatctcgg cgtctactcc gtcgtgcttc
     2041 actttgaaat gatccgctgc tacttcggtt aatgcagttt ctgtttgcac atcaacatta
     2101 ttcttctcga taatgtccat catcgaaaga cgtgtaatca tatctaagtc ttttccaaga
     2161 agtggcatca tttctacaat tgtaacatcc gagccgcgtt ctgagaagta ctcgaccaca
     2221 tcaagtccaa ctgcaccacc gccgataact gcaacttttt tgttactaaa ttcggtaaag
     2281 tcatcgatat ttgaaataag tccaaaaatc gaatgaacct tactgccttc tttgtcaatc
     2341 acgtcatgca aacctttaat cggtggaagt aatggtttgg atcctgtggc attgactacc
     2401 acatcaggat taaatgtatc aataagcgca gtatcagctt tagtgcctgt aataactttt
     2461 aaattggtta atttttctgc tcggttcgct aaataattag ggaaatcggc aattctactt
     2521 ttgtctggaa ggttggcaat ggcacgcgcc aagccaccag tttgttcact cgcttcaatt
     2581 agcgttgtgt tacagccaac ttcagccgcc gtacaagctg cttcaagccc tgctgttccg
     2641 ccgccaatta cgacaacatt ggtcggacga gtcacttttg tttctttgta tttatcttca
     2701 tgaataatat caggattcac cgtacaacgg attggcttcg acttggaaat tcggtgatcc
     2761 gcgcaaccga tattacaaga aatacatttt cgaagcatgt cttcttggcc agttgccact
     2821 ttgttcaccc agttaggctc agcgattaag ccacgtccca tcgcaagcaa gtccgcatat
     2881 ccttctgaca aaattttctc tgccgctttt ggactgcgaa tgttaccgga agtaatcgtt
     2941 ggtttgttaa atttatcttt caccgctttt gcaaggtagc ttctccagcc atcttccaag
     3001 ttcatttggt caatttgcaa gtataggttg tcatttattg ccgctgatac attcaaaata
     3061 tccgcttctt cttggcaata atctagcagt tccaaaatat cttctaagtg gttgccgcct
     3121 tctgtaaatt catctgcact aaaacgaagt acgattggga aaaatggacc aacttccgcg
     3181 cggacttttt ccaaaattag tttgacgata cgggcgcgat tttcaggcga gccaccaaat
     3241 tcatccgtac gtttgttata aagtggcgat aagaattggc atagtaagta cgagtgtccg
     3301 ccgtggattt cgactgcatc aaacccagct tgttgggcac gtctagctgc atcaccatat
     3361 ttattgacga tttcataaat ttcttctacc gtaagcgggc gcggtacagt accacctttt
     3421 ttagatggaa tatctgacgc ggaaactggt tgaagtccat tcaaacgtgc tggataagct
     3481 gatgcaccag cgtggttgat ttggatggat acacaagttc catgtttatg aagacgttct
     3541 gttaatttgt aaaatccagg gatgtattgg tcattatcga ttcgaagttg cgttgttccg
     3601 tttgtcccat aaggaaaatc tacacaagcg ttttcaatag tgattagacc tgttccacct
     3661 tttgcgcgtt gttcgtagta attcatatgt tcttctaaaa attcgccatt taatccagct
     3721 aggtttgtcc ccattggtgg cattatcaca cggtttttaa tggtcattct ttttacagtt
     3781 aatggttcaa aaatactcgg ataatctgtc ataataagcc tcctgcgact ataatctcag
     3841 caaatgattt gttacattat tcacgttcaa taatgcacaa tcttatttct ctttcattat
     3901 aagtcaggaa taattattaa tctaatgtat atttttcgat ttatccatag attttttcta
     3961 tacaatcgct tacaatagag ttatcaaggc attccgagga ggtagtttca tgaatttgcg
     4021 tcaattatac tattttaaaa aactagctga aaaagagcat tacacgatcg cagccgccga
     4081 actctccatt acccagccta gcttaagcca ttctatcgca gaacttgagc gagaacttgg
     4141 tgtctattta tttgaaaaac aaggccgcaa tattcgttta actaaatacg gtcgctttta
     4201 tttaacttat gtggaaaaat ccctcgccga actagaaaaa ggtgaaaaac ttttacacga
     4261 attaacgagc ccatcgcacg gaaatattga tttagggttt atttacacca tgggcgccca
     4321 tacggttcca gagctcgtcc agaatttcac caaagtcgaa agccataaag acatcacatt
     4381 ttcctttttc caaggtgcca ctaaatcaat tatccctgat ttaaaaaatg aaaaattcga
     4441 cctagcgatt tgctcctacg tcgaaaatga acctgatatt gagtttttac cattaacaaa
     4501 acaagagtta gttgttgtcg ttgccgaaaa ccacccactt gccaaacatg attcgattga
     4561 tttaaaagac accgcagatt attcgtatat tttcttttct gacaccagtg ggctgagacc
     4621 gcttattgat tctctttttg cggaaataaa tattcaacct aaaatcggct gttatgtaga
     4681 ggaggatacc gcaatggttg ggcttgtgag tgttgattac ggtatttcta tcatgccaaa
     4741 aatctcctca ttagcacact acaatgtcaa agtattatcc atcaacgaac caaaacacga
     4801 tcgttttatc tatctagcaa gtttgaaaaa ccactacatt tcgcctgctt ccaaggcttt
     4861 taaagatttc gcattacgtt atggtaaaaa gcatttccta taaaaaaagg agccaaccaa
     4921 atcggtggct ccttttctat taaaaataaa tacttcctgc ttcagcatcc gcattaaatc
     4981 ggtataactc accaactttt tctaaataag gtaaatactc gatattctcc ataaattcta
     5041 cttcatccgg caaaatacct ggcttcgtgc aaccatctaa cgtttggtaa agtagttcgg
     5101 ctgagaaagt ttctggcaag aaatcacgaa ttgctgttgt cagtaaaaac tcttccgtaa
     5161 tcgcactata cgctttttta agcatatcta aatggtcaaa agcaagtggc agttccaaag
     5221 cttctgtcat tgagaatagg ccgatatccg ccgcgtcatc cccagccgcg cgtttctcta
     5281 aagcttctgg tggcacaatc gcataaaatg cccgcgaaat aatccaaccg cgcggatcac
     5341 gacccggttt atcaaatacc ccaaacggaa tcaacggaat accagtcaaa cttgtttctt
     5401 cttctagttc acgcgcggca gcttggtccg cagattcatt ttcatcgaca aatccgcccg
     5461 gaaccgccca ttttccgcct tccatatttg gttttccttc tgcgtttgta aggcttcgtt
     5521 taattaataa aatatgtaat gttggtttcc cgttcaactc ttttactgta gttaaaatca
     5581 tatcgctcgt atagccatct ggtgtacgaa actcttttgc attataattt ttcagcgcat
     5641 cttctttgtt cacaaattct tctgtcatgt caaaatcaga ctcctttttg tgtatttagc
     5701 tctttccatt atagtatcac aaaaaaaaga atttgttcca atcactggaa caaatcctct
     5761 tatttttcga gaattgtgcg acctttataa gtgccgtctg gtgagatgcg gtgtgacata
     5821 cggtattcgc ctgtttcact atcgcgactc aaacctggtg ttgttaagcc tttatgcgta
     5881 cggcgcttgt ttttcttcgc tttggacgta cgtctagctg gaactgccat attgctcgcc
     5941 tccttatttc ttacacttgt atcattgtaa cgctaatcac acgaaacatc aatcttacaa
     6001 atcggctaaa ttcttcaccc attcattcaa aggacgacgc ggttttgctt ctggcacttc
     6061 cgctaagcta gttaaatgca aggttccaac aattttttgc tcagaaggga tacctaaatc
     6121 ttccgcaaac ttcgcatcaa aaataaatct attcgaccgc caaatcatcc caattcccgc
     6181 ttcccagcca agtaattgga tattttggat aaatgcacta gttgccccga ttgattcgaa
     6241 atcctttttc ccgtgaccga taatattcgt cgtcacaatg agtaagtatg gcggcgtaat
     6301 aattttcttc gcatagcctg cttttaaatc cgcaatctct gcttcagaaa aactaacccc
     6361 ttgttcgcgc tcattaaatt cgatgatttt ctcgatgtat cgctcttttt cagcaagtgt
     6421 atgcagcacg tatacattcc acggctctac tttgctatga aaaggcgcat aggcagcttg
     6481 ctctaaaatg gtgttcaccg tttctcttga aattggcgcg tcgttcgctt tcttaatgct
     6541 acgacgttcc ttaattgttt tttcaatcat gtttaattcc cccttaaatg ataaacgtta
     6601 tcatttagag aattatagca tgattggttt gtgggttgct agtaaagggg cttttggggt
     6661 ttagcatatg tgtttatttt gttcagatga ttctctatag accaaaacct gttttctaat
     6721 tctatggctg attcataata tgttttttca aataaaacca tttatttccc gctttctatc
     6781 tcaccatatt tcttagaaaa taactataat tcaatatgat agtgagaaca taatatccaa
     6841 ccgtttaacc catatgaagc ttgtaactca taataattta attttttctc gtttaaataa
     6901 tttagtagtt cgtcctcact ttcataatct agtggccaaa aatagttttt gccttcagaa
     6961 agtaaaattg acttctcact tataaagctg ctaacctctc cttttactat gtctaaaatg
     7021 atactattag acatttggtg ttcaaagcag aaagttaaaa gcccctcaaa tatgacttta
     7081 tattttctgt tttcttcatc cttaacaaac atgattaatt gagaattctc aaaatctgca
     7141 tgataagaca atatttcgct atcatgaact gtatttttca taattaacac tccttattta
     7201 gatggctttc ttggcggttt tctatcccaa tcccactcat gtctatgtgg aaattcgtga
     7261 gttccgtcgt ctgaatggtt aaaatctata tcttctttag ctctgccctt ttcatcataa
     7321 tatcttcttt gttttacact tccatcagga tttaacaaat cagccgagga actgggcata
     7381 gcttttcccg gaagactttg tttgttttcc acgatgatgt gtttaggcat tttactacct
     7441 tttttaacaa tttcttcata gtcaattctg ctagttttct taatcctttc tataaccgtt
     7501 ttatcagctt gtctcaattt tatcaatgta tttttcgata ttgtcagttt cttcccttga
     7561 taccctttcg tcgtgtagcc aaaaacaagt gaggttaaaa tcccaaaact ttgagctttg
     7621 cttatttctt gaccagttat cggatcttta ttttgcttca gtgattctag tgtggctttt
     7681 aacaactcgc cttcttcagt ggcttgctta ctttcttttg gtagctcacc gttaaaactg
     7741 gctgtattat aagcctccgt tgctttaata tccactttcc catcttttga aagaatccac
     7801 ataacgcctt gttttacttt gctataactc gcaaaattat agactgtcgt atcagtggca
     7861 ctcgcttttc ctagcgtttt tcgcattcgg ttcacagtgg caaaatttaa tttacttaaa
     7921 tcatagctgc ccgtttgact atcaaactgg atatttgatt gtaactctcg aacagtttgc
     7981 tggatacctt gcactaaatc cgtcaaatgg tcgaaaaaag ccccatgact ttgttcaaaa
     8041 gccagatatt tctctaaaat attttcttgc ttatatgcgg ttgctaactg ggaacgatag
     8101 gtttgcattt ggccttctgt actgctgttc attcgttggt acagtgcttc ttttttgctt
     8161 tcaatgcggt caatcatttg gccgagttca tataaaccat ctgcatcaat tttagcatta
     8221 ggagaaaggt ctacttggtc gtgaaagtct tggatatacc gcttcaacct ttcctcactc
     8281 tcattcattg cctcgattat cgtgtcgcag agtggaatgt atgtcatttg aaagtaattt
     8341 ttggacgctt ccacggcctt cccttttaaa ctaccatctt ctacgtagtt tgtcacggtg
     8401 gttttgacgc cttggatgat ttttcttcct gtttggttgg ctgcgcgtag ttggaatgca
     8461 aaatcttgta tttctccgat gtcgattcgg ctcactggaa caactccttt tgtatatctt
     8521 gttgtttact ttccaattgg tagatgtttt tttggtatgt atttattttt tcttggcgtt
     8581 tttcttcctc agcttgaaag gtttggcacc atttattttt ctcgtctgct tggaggtctt
     8641 ctaaatagta gccgaaattg cgagcttgat cgccttgcca gacttctctc atcaactcca
     8701 aagactcgcg ttcttcgtaa caaatccgct caaaatcttc ttctagccaa attcgctcat
     8761 tttgttcatg tttgagcata tataaggata attccgcatc tttttgttgt ttttggagag
     8821 tttgtagttg ttgtttcaat ttctcgttgt ttgaatccac ttaaatccat ccctgctttt
     8881 ttattcttaa tataccgcat aagatataaa aattcaataa ttatctgaaa attcgagcgc
     8941 gcaaaaaaac aagccatcta cctcgaaacg gcttgttcat tcacttctta tttttcaaca
     9001 atcacagggt tttgcacgtg aaccacttca aaacgagcga ttgcatttcc tacgatgcct
     9061 ttgcggtctt ctctttgttc tctagtgtct tttgttctgc cgtgtgcttt tttgaaggaa
     9121 tcgcttttca cccaattgcg ttgggcttct tcactttccc atttgcttgt tacgactact
     9181 tcttcatagt ctttgtcttc tggtttgctg tgccatagtt cgaagcctag gaaaccttct
     9241 acttctgcga tatcttttgt tggatgtccg tcgccatttg cgcctgtgaa ctgacggata
     9301 acgtgctctg ctgcgccttt ttctacctta atcgtattag ttacaataat cattcttaaa
     9361 tcccccttgg ataattgtat tgtatgtata ataggctggt tccttccatt atattgataa
     9421 tgattctcaa tgtcaatttt agggaatggg cttggagtgg gatttaaaaa gaacaaattt
     9481 cacaatcaat gaaatttgtt ctttagtttg ctattctttt tcaaccaccg gaatccaaac
     9541 ctccgaataa taatcagcgg cagttgtgtc accttctgtg tagacttcta gttctggagc
     9601 gtttccgtgc gcgtagttgc ttgtttggaa ccattcgccg taaatgtatt cccacacttt
     9661 ttggattgcg cttggtagtg ggccgactga tttgaagatg gcccatttac ttgctgggat
     9721 gattagtttt tccatgtctg ctggtggagt gagttcggat tcaatcgcga tataatagtc
     9781 cattttgtcg ccgttcattt tacaaacgcc taaaatacca tcaattgttg caaattcagc
     9841 taactcgttg attcgttcgg catcaccatt tgtgtttgct tcttgccaaa attggctgat
     9901 tttttctttt tgcgcatcgt tttcaaccga aaaagttcgt tttttcccca cagctgtaaa
     9961 agcatttcgt tcgacaattt ctacttccat gatttttgtc ctccttcaat tgctttcggt
    10021 actttaagta taaacaaaaa ctatccaatc tccaaatgga aaccagatag tttgaattat
    10081 tattcttccg ctgctgcttg tttttgtttc atccgttcgc gcacgccaac tcgtttgatt
    10141 tgtttactac gaagttgccc acacgcggca tcaatatccg tcccgtgttc gcggcgaata
    10201 acacaattaa taccattttt cttcaatgta tcatagaaag cgagtacgtc ttcttttgtg
    10261 ctacgttcat aatcgatatg ctcatccacc gggttgtaag gaatcaagtt aacataagct
    10321 aaatggcgat gttctccgag aagtgccgcc agttcgagcg cttctttttt gtggtcgttt
    10381 acacctttta gcataatgta ttcaaacgtg attcggcggt tagttttgtt aacgtaataa
    10441 tggattgctt ccatcaattt ctcaattgaa taggtcttgt taatacgcat aatactcgtc
    10501 cgcagttcat tgttcggcgc atggagggaa atcgctaagt taacttggaa atcctcattg
    10561 gcaaaatcaa taatgcgcgg tgcaagacca cttgtcgaaa cagtgatatg gcgcgcgccg
    10621 attgcgaggc ctttgtcatg attaatcaca cgcaagaaat ccatcacatt atcgtaatta
    10681 tcaaacggtt ccccgattcc cattacaacc acgtgactca cgcgttcttc caaattacgt
    10741 ccatccaaat aatgctgcac attcataatt tgttccacaa tttcgccagc ggttaagtcg
    10801 cgactttttt tcaaaagccc actcgcacaa aaagtacagc cgatattaca accaacttga
    10861 gtcgttacac aaaccgacaa gccatattct tgcttcatca tcacggtttc aattaagttc
    10921 ccgtcactca gcttaaataa atatttcgtt gtgccgtctg tcgattcttg taccacttgt
    10981 tcttctaaag tgttcatcac aaaattcgct gttaaaagtt caattgtttc ttttggaacg
    11041 ttactcattt cttcaaaagt tttgacacgt tttctataaa gccagtccca cacttgtgtt
    11101 gcgcggaatt tcttttgacc gtgtgcttct agccattctg ttaattttgt ccatgttaat
    11161 ccataaatgg agcttttttc cattgttcag cctcttttca ggtcttgttt tcgtctataa
    11221 agattatagc tgttttatgg ttcacaagca atgctatttc gtaaatatca gccgtttgtc
    11281 ctgtctcgca caaaaaaagt agctattctg tcacaaatag ctactttctc actttatcta
    11341 aacatggttt gggttgcttt cgctagcact tttggatcac gattatgtgg tgttactggg
    11401 cagatttttt tgtcaatatc aagtaacgta tacacggcga ttctagcagc acgaacggaa
    11461 tattcttcgg tgaaaaccat atcttttgga atttccacaa attggctaat catcgcaaag
    11521 tttgtactac cttctggaac aacggccgga cgatcactca ttgcccgtgg ttcaaattgc
    11581 gcatcgatgt atggcatgta gcacggaatt acattgataa tatccgcttt aatttcttca
    11641 aaatcgtctt gccagttcaa atgacacatt aattcatata aaatttcttc cccggtacat
    11701 tctttcatcg gttttttcac gaaatcaccc acgcggtctg gatataatcc gtaaccccag
    11761 aaaatcgtag tgtttgcatc ttgcgcttta aaatgaggtt gtgcggcaac aacagtactc
    11821 attaaccaat tagagtcttt gaaagtcatg agcgcaccac ttcctggaat gttccctgtg
    11881 aagcgttcaa tgcgttttaa taatttatca ccatgacaag tgacggtaaa actttgccag
    11941 tttgtttctt cttcatgagc gaagaatggc tctggattgc ctaaatttgg tttcttttga
    12001 gcgactttgt accaaagctc accagaaatt ggtttttctt caggttttgg tgccggtgta
    12061 ttcatatcac caagagtcgc gctatctgtc atacaagcat tcgtcataat cacatcatca
    12121 tctgggccaa gtttgatagt ggatccatcc gataaatgaa gtgctgtcgc tgtaattcca
    12181 ggcgcatctt tgaaatcaat atcttccacc gtttgattaa ttgtaaaatc aacatggtgt
    12241 ttatctaaaa atgtttttaa aggtaaaatc aagctttcgt attggtttag aggggttctt
    12301 gttacacctt ccagcgtatc aatccgacta aattctaaca tcatccgatt catataacgt
    12361 ctaaattcaa acaagctgct ccatttttgg aaagcaaaag tggtttgcca cataaaccaa
    12421 aaattcgttt caaaaaagtg ttcgtcaaac caatcacgta tcgttaaatt atccagtttt
    12481 tcttccggag tagcgagcag tttcgtcatc aacatccggt cattattatt aaatcccatc
    12541 gaatgcgcat cgaggatatt gcgatcttta tcaactaatc tcgcttgcgc atgggttgga
    12601 tgtaaatggt caaaattcaa aatctcttct gtaacactaa agttcggcat atcaagagac
    12661 ggaatactac taaataaatc ccagaaattt tcataagttt cttcattcaa catccgacca
    12721 ccgcgacaaa caaagccatg ttccacgctt ccggctccat cattacttcc gcctaaaata
    12781 tgcatacctt caataatatg aatatttttc ccatcaaaat tggcatcccg aattaaataa
    12841 acagcgcccg ccaaactagc aatcccgcca ccgacgaaat acacttgttt gtcaccataa
    12901 tagcgcgcct taattgcttc atccactgcc cgttcttttt cagcggcctt ctgttcagaa
    12961 attttctttg cggcaatacc tgttccaatt gcagccccag ttagagcgac tagcgtacgt
    13021 tttttatttt tcatcactat ctcctccaat ttcttgatac agatagtata ccgcttgtcg
    13081 ttcgctttta atctgggcaa aagaacgctt atgtctggtt tttagacaaa ttagccatat
    13141 tgtctagttt tcgcggtaca tgctgtttgc taaaaattcc gtatcctttg caagtcgaaa
    13201 tagctggttc gcaatcattt ccggtgcctc tttgaaaccg cgcgtaatcc atttaatcag
    13261 tactcccgag cagccgtaag aaaagaattc cgcataaaat actcggtctg cctcgttcac
    13321 ggctccattc gtatcaattt tctcaaataa atccataaac agcgaattcg ttaatttaga
    13381 aaagcaaaaa gaaaggatac tcgcatccgc cgaaaccgtg tttttatata aatcagcatt
    13441 ttctttaatc gattccagca ttttcagtac atgcttatcc caattttcaa gcgtaatccc
    13501 atccgccaaa caatggaaaa agtcattttc atacgtccaa gtaagcaaat cgtatttatc
    13561 tgtaaaatga tagtaaaaag tttgccgatt aagtccacaa atattcgtaa tatccgcaat
    13621 actaatcttt tcaaaccgct tgtgctgaca aagctccatc agcccaccag caatcgcttt
    13681 tttagtaatg agtgattccg ccatggcatc cgccccgttt cgtttgtttg ggttaattgt
    13741 atctcaggtg gggttggaat tgctagggaa agcatgggag atgttggtgc tttattatct
    13801 ccttgaatga aaatgacaga ttttagttga actaatccaa agttttttgt cttctcgact
    13861 agctctcgtg cattaaggtg tctcaagtta tttagtaaat tcactttggg accttagccg
    13921 gcttgatcat tcgattggcg tgatgctttt ttgttttaat cattttgctc ttgtagtggt
    13981 ggatgcttca cttgatcgtc ctcttgactc gagccatctt taaaaacaag gacataaata
    14041 tgatgcggaa actcgtatct ttcatcatag ctatattcat actttagatt tggatcatct
    14101 ttaaaaacta tctttgtaag ataaccaccc attttccaat ctttctttat cactctagtt
    14161 tcaatttgat tagatttgat tttttgttct gctaggtagt tatccactgc tttattcgcc
    14221 gtatgtttag ggattacaaa ccaataaaca tatccgataa cgcaaagaat taacactata
    14281 ccaatcgtta tccaccattt tttatacttt ttcatttagc tacacttcct aaggcatgag
    14341 atttatttaa agtatttcac ttgttgcctt tttgaaaaat agtttggtaa atcatacagg
    14401 aaaactaatg aagaaaatac atgtactaca ggcttacttc ctttaccaca atagttgttc
    14461 ctactaaaac catagcatag aaaatgaatg tataaccaaa aatgtaatga aatgtccgat
    14521 tcttgtcatg aacgacctat tttagacgaa aatcaataca ttaagaat
//
LOCUS       DASEAA010000059        14114 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.059, whole genome shotgun sequence.
ACCESSION   DASEAA010000059 DASEAA010000000
VERSION     DASEAA010000059.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 14114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 14114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..14114
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.059"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(64..1089)
                     /locus_tag="U0342_001491"
     CDS             complement(64..1089)
                     /locus_tag="U0342_001491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2422837.1"
                     /translation="MASTIYDIAKHAGVSKSTVSRVLNNQANISEESRKKVLEAIDEL
                     NYQPSKLARALTSSGFDAIMVISNRSTTTTTGNPFFSEIIQSISTQAELENFDLILQT
                     AKNSEDELKKCLSKIQEKMIKGIIMLSSPADEDFFHQLDPYNIPIVVTGKVEGHYKNI
                     YSVDTDNFGDSYALTKHLIKQGHQKIACIHAPLDYHVSIDRLAGFRSCLFDHQLDLRN
                     DWIIDSGYSIEDSYKAALRLMEGPDKPTAVFATDDLKVLSIYKMAADKNLQIPADFSV
                     IGYNDKVASSFLSPPLTSIDIPINKLGKKATNLLFRLIHQDKNVPKTTIIKTEMIERE
                     SIQKINV"
     gene            1314..3014
                     /locus_tag="U0342_001492"
     CDS             1314..3014
                     /locus_tag="U0342_001492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HEM2422838.1"
                     /translation="MTNLRKRLSRLYAEDVVDSLAARIEARVQQTQQRKLTRKDQWDE
                     KDIVLITYGDQFKEESKKTLKTFKKMYDSYLKSTFEVVHFLPFYPYSSDDGFSVIDYK
                     AVNPELGDWEDIKEMEQSARLMFDFVCNHMSAKSDWFKRYLAGDEEFRNFFVEMDPKM
                     DLSSVTRPRATPVLTPFQFDSGKVGHIWTTFSEDQIDLNFASPEVLYKMIDVLMFYLE
                     EGAEYVRLDAVGFMWKVPGTSSIHLEETHEIVKLFRDLVDIAAPGTIIITETNVPHVD
                     NISYFGNGEKEAHMVYQFPLPPLVLHAIHHGNAEFLRNWAKNLELPEGKRTFFNFLAS
                     HDGIGLNPVRGIIPEAEILALVNDLEEEGALVSYKQNPDGSKSPYEINVTYMDALSKQ
                     ADTDDLRMSRFLVAHAVLMSIPGVPAVYVQSILGSRNDYSGVETTGHNRSINRKKYDL
                     AEITAELEQRGSLRKATYDALTKLISTRKAESLFHPEIPMEVLESTAELFVVKRSSDV
                     ESIILIHNLSEKEVSYSLDSGVYTNLYTGSTVTGSDSIKLSGYEFCWLKTKNYREEQK
                     "
     gene            3011..4303
                     /locus_tag="U0342_001493"
     CDS             3011..4303
                     /locus_tag="U0342_001493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2422839.1"
                     /translation="MKKKSLVLLVVVLVLSAVLAACGGKESSSKEVTIEFMHSSVEKE
                     RLDVINKLIADFEKENPTIKIKQIPVEEDAFNTKVVTLARSGKLPAVMEVSQDFAKVM
                     DKDELIDQDAVKEVIDSVGEDKYYEGATNLVRSEDGKSYIAAPLSGWVQGIWYNKKAL
                     ADAGFEEPKNWADIEKVAKKFTNKADKKYGIAIPTAESTMSEQAFSQFALSNKANVLD
                     AKGNVTIDTPEMKEALQYYKDLSAYTMPGSNDVTEIKDAFMNGTVPMAMYSTYILPSV
                     YEEGDPKNIGFAIPEEKEKAVYGTVSGLTISAGLDDEQKKATKKFVEYLSQPENMATW
                     VLMSPGGAQPVNKEVVEQKAYKENEVIKSFGELPNEIAASFNDIQVFGLVDGKNLTKM
                     GDITSSGIIAQMVNNVTVGGGDVSADLKAAQKKAEEGK"
     gene            4379..5260
                     /locus_tag="U0342_001494"
     CDS             4379..5260
                     /locus_tag="U0342_001494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2422840.1"
                     /translation="MKTKVYKRSDFKLAMILLAPSFVLLAALVLYPMISNIQISFLDM
                     PLNPNIKSVFIGLQNYIDILKDPEFYKSLGLTVAYTVLVVVGSTGMGLLVAIFFNREF
                     RFRRTARSLIILSYVTPSISLIFAWKYMFNNGYGVINFMTVDVLHLFKEAPLWFDNPV
                     SSFFLVTFFAIWRYFPYAFISFLAILQTVDKSLYEAADMDGANIWDKFKIVTLPAIMP
                     VLATVITLRAIWMFYMFTDVYLLTNKVNILGVYLYKTAFAFNDLGKAAAISVILFVII
                     FVVIIFARKRVDLNGGK"
     gene            5247..6098
                     /locus_tag="U0342_001495"
     CDS             5247..6098
                     /locus_tag="U0342_001495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2422841.1"
                     /translation="MAVSSKKSKRTKKIAFYVTMVAFLCITLFPFAIMLMTSFKSSKE
                     AISTHPTFFPKEFTFQHYIDIFNPDIFPFLTYFKNSLVVSVFAAGIAVVLGILGAYAL
                     SKLRFKGRMTINASFYTVYMFSGILLIVPLFKIISSLGLYDTETALIITMVVQTLPTA
                     VFMLKSYFDTIPTDIEEAAMMDGLNRFQIILRIIVPLAISGIVSVFVYCFMVAWNDYL
                     FASIFLSSAEKFTLPIGLNTLFSTPDYIWGRMMAASLVTALPVVIMYAISERFIKGNL
                     TDGGVKG"
     gene            6117..7169
                     /locus_tag="U0342_001496"
     CDS             6117..7169
                     /locus_tag="U0342_001496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466358.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-binding alcohol dehydrogenase"
                     /protein_id="HEM2422842.1"
                     /translation="MKKLVATAPRVAELVEYNDREVLEDEVKIKVQFASPKHGTEVVD
                     FRGISPFIDEEFSPEWNLFVSRETNSARGIVFGEFQLGNMVVGEVVECGSKVTEYELG
                     DIVCSYGPIMETVIVKAVDNYKLRKLPKGANWKNAVCYDPAQFAMSGVRDAHVRAGDY
                     VVVVGLGAIGQIAIQLAKKAGASVVIGVDPLSHRREIAEKHGADATFDPITTDVGLEV
                     KRLTGKLGADSIIETSGNAAALQAALRGIAYGGTISYVAFAKPFPEGFNLGREAHFNN
                     AKIVFSRAASEPNPDYPRWDRKRIEETCWELLMNGYLDCSDIIDPVVPFADSAESYMK
                     YVDQQPDLSIKMGITL"
     gene            7182..7976
                     /locus_tag="U0342_001497"
     CDS             7182..7976
                     /locus_tag="U0342_001497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2422843.1"
                     /translation="MKLGTQNQAFFPENIEEKFAYVKEMGFEGFEIDGKLLVENLDEV
                     KKAIEKTGLPVSTACGGYDGWIGDFIEERRLNGLEEIKAILEALAEVGGQGIVVPAAW
                     GMFTYRLPPMVSPRSQAGDFKAVSESLVYLDKIAGETGTKVYLEPLNRYQDHMINLLS
                     DAQKYIDENELKNVEIIADFYHMNIEEDSIPTVLETYKDSIGHIHVADNHRYQPGSGS
                     LDFKTSFDQLKKNGYNGFLTFECRVRSENPEQAYKDALAHLKSCLI"
     gene            8033..9064
                     /locus_tag="U0342_001498"
     CDS             8033..9064
                     /locus_tag="U0342_001498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2422844.1"
                     /translation="MKKRVAIIGAGQVAEKVHAAYYKTRNELELVAVCDPSLERGEEF
                     RANNGFEKHYATAEEMFAVEKIDIISICTPNRFHFDNVMLSLANGAAVMCEKPPAMSA
                     AEAKAMWELAEEKGAILAYDFHHRFSSEAQFLKRNSALLGEIYCVKATALRRSGVPGW
                     GTFTNKEMQGGGPLIDMGIHMLDAAMFVLGFPKVKKVTAKSFQKIGTKKSAGTFGSWD
                     PEKYTVEDSLFGFIELENGGLIELDTSFALHIKPESALNVDFFGDLAGGSLYPAEIYT
                     DNAGEFQLLEKLGQLEENKHENSMKAFVDSVLGAGKVELAGAEQGYIIQRIVESLYES
                     AEKGESVSL"
     gene            9061..11238
                     /locus_tag="U0342_001499"
     CDS             9061..11238
                     /locus_tag="U0342_001499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466355.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 65 protein"
                     /protein_id="HEM2422845.1"
                     /translation="MKKIIEKEFALNYLNKYGSQMTVGNGYLGVRGALEEEYPEQVRG
                     MYVAGIYNRPSGSLSSELVNLPDVTRFQVMLDGENFSMQAGKVHAYERYLDMNTGELI
                     RKITWESSAGKKYQLNFHRFVSKAAKHVIAAKVEIMPLSGAAKVKVKTGIDAQQTNFG
                     TQQLAELSLRIFDEKLMVGEYETIESKQHITIATKVNKKGIFTAKNRQLMTEVEQEIA
                     ENQLFTLEKISMVKTSLDQVDAELPNTTYAELKRASETLWADFWEHAGVRVESTNDFD
                     QFALDFACYHLEIMTPKDDFRCSVGAKGLTGEGYKGHVFWDTEIFIMPFFLYNKPEIA
                     KQLLKYRYLHLKEAKEKATKNGYNGALFPWESAFSGEEETPEFAAINIRTGTRQKVAS
                     AISEHHLVADIAYAVCEYETATKDAQFMKECGSELLLETAEFWLSRATNRNGRLEILD
                     VIGPDEYTEHIDNNTYTNYMAHYNVKKALEWNKDNADFVARAEAFLEKIYLPVANESG
                     LIPQDDTFLEKDWINLDKYKAAQGTQGILLDYSRQEVNELQILKQADLVMLFYLFPRM
                     FAPDAVKQNLDYYENRTIHDSSLSKAIHAIVENRTGNRAQAYQFFQEACLIDLGSEPH
                     SSDDGLHAASLGAIWLAVVFGFAGIDTSGELLEIAPNIPDSWQSVAFEFSWKGEKILV
                     EIAQNRLHLSKSTKSVLELVIHGEKHQLTDTLTIKLDQKDVSL"
     gene            11235..12356
                     /locus_tag="U0342_001500"
     CDS             11235..12356
                     /locus_tag="U0342_001500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466354.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM2422846.1"
                     /translation="MKIVIAPDSFKESLTAHEVAEYIKEGFQEIYPDADYHLLPVSDG
                     GEGTLEILSKALGAKKMKIDVSGPFGDPVSAQVAFTDGNKKALIEMAEVCGLHLVPTT
                     RRDPLQVSTKGVGELILHAMEKGATEIIIGIGGSASNDGGIGMASALGYEFLDAENNI
                     VNPIGANLADIATIRSEKVPAELENITVNIVTDVENPLCGEAGASYVFGPQKGLAVTD
                     LATADGAMRQFYQLANPAMVTMPRAGAGGGIGAGLVTFAKANLLSGIDFVIEALQIKT
                     VCEDADLVIVGEGKMDGQTAQGKAPVGVAKVVPKETPVFAICGSVGEGLEAVYEVGIS
                     AVFPSIAKPATLENILKETPNNLRRTARNVAAVWKGRVE"
     gene            12353..13015
                     /gene="pgmB"
                     /locus_tag="U0342_001501"
     CDS             12353..13015
                     /gene="pgmB"
                     /locus_tag="U0342_001501"
                     /EC_number="5.4.2.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466353.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-phosphoglucomutase"
                     /protein_id="HEM2422847.1"
                     /translation="MTTALKGVVFDLDGVITDTAHYHYLAWKKTAESIGIEFDEAFNE
                     KLKGVSRIDSLLLILKKDGRENDFTEEQIEALAADKNDFYVSLLKEITPADVLPGIKE
                     LIVDLKKQNLKCAIASVSKNARTVLSALEMEQEFDYIVDAAKITKSKPDPEIFVEACR
                     GLGLETSEVVGIEDAQAGIEAINAAGIVSVGVGSGLRDADMTVKNTGLLDLRILEILH
                     SK"
     gene            13138..13458
                     /locus_tag="U0342_001502"
     CDS             13138..13458
                     /locus_tag="U0342_001502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2422848.1"
                     /translation="MAIIFAKEENLEEIISSHPKILLNFWAEWCAPCRCFWPTLEQFA
                     EMEEGNVQVVKINVDKQRALAQKFDVKGIPNSLVLVDGEIKGGIAGIVSCDELRSRFK
                     SLAK"
     gene            complement(13516..14091)
                     /locus_tag="U0342_001503"
     CDS             complement(13516..14091)
                     /locus_tag="U0342_001503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_019637960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM2422849.1"
                     /translation="MKVRRSIYALDKNVSVEDSKIEEIIKDAVKYSPSSFNSQSSRAV
                     ILLGENHDKLWNIVEDTLRAIVPAENFAATEEKVGSFRAGYGTVLFFEDTAVIEGLQE
                     NFALYADNFPVWSEQSSGIAQHSVWVALANAGIGASLQHYNPLIDDAVKAEWNIPASW
                     NLRAQMPFGNIVQEAGEKEFIDDADRFRVFK"
BASE COUNT         4377 a         2258 c         3299 g         4180 t
ORIGIN      
        1 ccaccatgtc aaggtgatac tctcccaact gagctacagg accagtaaac tcagaaaata
       61 agtttagacg tttattttct gaatggattc acgttcaatc atttcggttt taataatcgt
      121 tgtttttggt acatttttat cttgatggat taagcggaat aataagttag tcgctttttt
      181 ccctagtttg ttgattggaa tatcaataga cgttagcggc ggcgacaaga aagaggacgc
      241 tactttatca ttatagccga tgacggaaaa atctgcaggg atttgtaagt ttttatcggc
      301 ggccattttg taaatgctaa ggacctttaa atcgtcggtt gcgaaaactg cggttggttt
      361 atctgggcct tccattaggc gtagtgctgc tttgtagcta tcttctatac tataaccgct
      421 atcaataatc cagtcgttac gtaaatctaa ttggtggtca aacaggcagc tgcggaaacc
      481 agcaagacga tctatcgaca cgtgataatc gagtggagca tggatacaag cgattttttg
      541 atgaccttgc ttgattaaat gttttgttag agcataactg tcgccaaaat tgtcggtgtc
      601 aacagagtat atatttttgt aatgaccttc tacttttccg gtcacgacga tggggatatt
      661 atacgggtct aattggtgaa aaaaatcttc atcagcggga gaacttagca taataatgcc
      721 ttttatcatt ttttcttgaa ttttggagag gcatttttta agttcgtctt cgctgttttt
      781 agcagtttga agaattaggt cgaaattttc caactcagct tgagtggaaa tcgattgaat
      841 tatttcggaa aaaaatgggt ttccggttgt ggttgtagta gagcgatttg aaataaccat
      901 gatagcatca aagcccgaag aggtaagtgc gcgcgctagt ttgcttggct ggtagtttag
      961 ttcgtcaatc gcttctagta ctttttttcg tgattcttcg gaaatgttag cttgattgtt
     1021 tagtactcta gataccgttg attttgaaac tcccgcatgt tttgctatat catatatggt
     1081 tgatgccaag gtaatcttcc tttctcttta ttgtttccgg tatcggttcc ggtcattatc
     1141 atccatgttt atattactca attttctagt aaatgtccaa ctagatgtta tatatgagag
     1201 aaaactcact attatcaacg tgttagaaaa aacattaaaa attgtgtttg acagaaagcg
     1261 ctttccatac tataattctt cttgtgggag cgctcccggt taggaggtaa atgatgacga
     1321 atttaagaaa acgactttcg cggttatatg ccgaagatgt ggtagatagt ttggcagcta
     1381 gaatcgaagc gcgggtacag caaacgcaac aacgaaagtt aacacgaaaa gatcagtggg
     1441 acgagaaaga tattgtttta attacatatg gagaccaatt taaagaggaa tccaaaaaaa
     1501 cgttaaaaac ttttaagaaa atgtatgata gttatttaaa atcgactttt gaggtagttc
     1561 atttcttgcc tttttatcct tattcttcgg atgatgggtt ttcggtcatc gattataaag
     1621 cggtgaaccc ggagctgggt gattgggaag atattaagga gatggaacag tcggcgcgct
     1681 tgatgtttga ttttgtttgt aatcatatgt cggcgaaaag tgattggttt aagcgatatt
     1741 tggcgggtga cgaggagttt aggaactttt ttgtggaaat ggatccaaag atggacctta
     1801 gttcggtaac aaggccacgt gcgacaccag tgctgacacc atttcaattt gattcaggaa
     1861 aagtagggca tatttggacg acttttagtg aggatcaaat cgatttaaac tttgcttctc
     1921 cggaagtgct ttacaagatg attgatgttt tgatgttcta tttagaagaa ggtgcggaat
     1981 atgtgcgact tgatgcggtt ggctttatgt ggaaagtgcc gggaacgagc tcgattcatt
     2041 tagaagagac gcatgaaatc gtgaaattat ttagagattt agtagacatt gcagctccgg
     2101 ggacgattat tataaccgaa accaatgtgc cgcatgttga taatattagt tattttggaa
     2161 atggtgaaaa agaagcgcat atggtttatc aattcccgct tccaccactt gtgctccatg
     2221 cgatacatca tggtaatgca gaattcctcc gtaactgggc gaagaattta gagctaccag
     2281 aaggcaagcg aacattcttt aatttccttg cctcacatga tgggattggg ttaaatccag
     2341 tgcgcggcat tattccagaa gctgaaattt tggctttagt gaatgatttg gaggaagaag
     2401 gcgcgctcgt ttcatataag caaaatccag atggttctaa gagtccgtat gaaattaacg
     2461 tgacgtacat ggatgcgcta agtaaacagg cggacacaga tgacttgagg atgtcgagat
     2521 ttcttgtggc tcatgcagta ctaatgtcta tcccaggcgt tccagccgtt tatgttcaaa
     2581 gtattttagg aagccgcaat gattattcag gcgtagaaac aacaggccac aatcgctcta
     2641 ttaatcgaaa aaaatacgac ttggcggaaa ttacagcaga gttggaacaa agaggctcct
     2701 tacgaaaagc aacttatgat gcgttaacga aattaattag cacacgaaaa gcggaatcac
     2761 ttttccatcc agaaataccg atggaagttt tagaatctac ggcggaattg tttgttgtta
     2821 aacgttcatc cgacgtggaa tcgattatat tgattcataa tttatcagaa aaagaagtga
     2881 gttattcact agacagcggt gtttatacaa atctttatac gggctccaca gtaactggga
     2941 gcgattccat aaagcttagt ggctatgaat tctgctggct aaaaaccaaa aattacaggg
     3001 aggaacaaaa atgaagaaaa agagtcttgt attacttgtt gttgtgttgg ttctaagtgc
     3061 ggttctagct gcatgtggag ggaaagagtc tagtagtaag gaagtaacga ttgaatttat
     3121 gcattcatcc gttgaaaaag agcgtttaga tgttattaat aaattaattg ctgattttga
     3181 aaaagaaaat ccaacaatca aaatcaaaca aattccagtt gaagaagatg cgtttaatac
     3241 aaaagttgtc acacttgctc gctctggtaa acttccagca gttatggaag taagccaaga
     3301 ttttgccaaa gtaatggata aagatgagtt gattgatcaa gatgcagtga aagaagttat
     3361 cgactcggtt ggagaagaca aatactacga aggtgcaaca aacttagtac gttctgaaga
     3421 tggtaaaagc tatatcgcag caccattaag cggttgggtt caaggtattt ggtacaacaa
     3481 aaaagcttta gccgatgctg gttttgaaga acctaaaaac tgggcggata ttgaaaaagt
     3541 agcgaaaaaa ttcacaaata aagcagataa aaaatacggt attgcaattc caacagcaga
     3601 aagcacgatg agtgagcaag ctttctccca attcgcactt tctaataaag ccaatgtttt
     3661 agatgcaaaa ggtaatgtaa cgattgatac accagaaatg aaagaagcac ttcaatatta
     3721 taaagatttg tcagcataca cgatgcctgg ttcaaatgat gtaactgaaa ttaaagatgc
     3781 atttatgaat ggaacagttc caatggcaat gtactctacg tatatccttc catccgttta
     3841 tgaagaaggc gatccaaaaa atatcggttt cgcaattcca gaagaaaaag aaaaagcagt
     3901 ttatggtaca gtttctggtt taactatttc agcaggactt gatgatgagc aaaagaaagc
     3961 aacgaagaaa tttgttgaat acttgtctca accagaaaat atggcaactt gggtattaat
     4021 gtctccaggt ggagcgcaac cagtaaataa agaagtagta gaacaaaaag catacaaaga
     4081 aaatgaagta attaaatcgt ttggtgaact tccaaatgaa atcgcagcat cattcaatga
     4141 catccaagtt ttcggacttg ttgacggtaa aaaccttaca aaaatgggag atattactag
     4201 ctcaggcatt atcgcacaga tggttaataa cgtaactgtt ggcggtggcg atgtatcagc
     4261 ggacttaaaa gctgcacaga aaaaagctga agaaggtaaa taatcaaata gcggggagtt
     4321 gagtctcccc gtctttttta acagtttagt acgtcgcttt ttgatttaag gaggcattat
     4381 gaaaacgaaa gtatataaaa ggtccgactt taagttagca atgattttac ttgcgccaag
     4441 ttttgtttta ctggcagcac ttgttttata tccgatgatt tcaaatatcc agattagttt
     4501 tttagatatg ccgctaaatc cgaatattaa atcagtcttt atcggtttac aaaactatat
     4561 agatattttg aaggatccag agttttataa atcactaggt cttactgtgg cttatacagt
     4621 acttgtagtg gttggaagta ctgggatggg actacttgtg gcgattttct ttaaccgcga
     4681 atttcgtttt agaagaacgg ctcggtcgct tattattttg tcatatgtaa caccatctat
     4741 ttctcttatt tttgcatgga aatatatgtt taataatggt tatggcgtaa ttaattttat
     4801 gactgtggat gtactccatc tgttcaaaga agcgccactt tggtttgata atccagtttc
     4861 tagtttcttt ttagtaacct tttttgcaat atggcgttac ttcccgtatg catttatttc
     4921 gtttttagcg attttgcaaa cggtcgataa gtcgctttat gaggcggctg atatggacgg
     4981 agcgaacatt tgggataaat tcaaaattgt tactttgcca gcgattatgc cggtacttgc
     5041 gacagttatt acgcttcgtg cgatttggat gttctatatg ttcaccgatg tatacttact
     5101 cacgaataaa gtaaacatcc ttggagttta tttatataaa acagcattcg cattcaatga
     5161 tttagggaaa gcagcagcga tttctgtcat attatttgtc attatttttg ttgtgattat
     5221 ttttgcaaga aagcgggtgg atttgaatgg cggtaagtag taaaaagtca aaaagaacaa
     5281 agaaaatcgc gttttatgtg acgatggttg catttttatg tatcacgttg ttcccatttg
     5341 cgattatgtt aatgacttca tttaagagca gtaaagaagc catttcaaca catccaacat
     5401 ttttcccgaa agaattcact ttccagcatt acatcgatat tttcaaccca gatatttttc
     5461 cgtttttaac gtactttaaa aatagtttgg ttgtttcggt ttttgcggcc gggattgcag
     5521 tcgttttggg gattttaggc gcttatgcgt tgtcgaaatt acgctttaaa gggcgtatga
     5581 cgattaatgc gagtttttac acggtttata tgttctccgg aatcttgtta attgttccgt
     5641 tgtttaaaat aatttcgagt ttggggttat atgatacgga aacagcttta attatcacga
     5701 tggttgtaca aacactacca actgcagtat ttatgctgaa aagttatttt gatacgattc
     5761 caactgatat tgaagaagca gcaatgatgg acgggctgaa tcgcttccag attatcttac
     5821 gaattattgt tccgcttgcg atttcgggta ttgtttctgt gttcgtatac tgcttcatgg
     5881 tagcttggaa tgattatctg tttgcttcga ttttcttatc tagcgcagag aaattcacgt
     5941 taccgattgg cttgaataca ttatttagta cacctgatta tatttggggt agaatgatgg
     6001 ctgcatcgct tgttacggcg cttccagtcg ttattatgta cgcaatttca gaacgattta
     6061 tcaaaggaaa cttaacagac ggtggagtta agggataaga aaggaagtta ttgaaaatga
     6121 aaaaattagt agcgacagcg cctcgtgtgg cggaattagt agaatataat gatcgtgaag
     6181 ttttagaaga tgaagtgaaa attaaagttc aattcgcttc tccaaaacat ggtacagaag
     6241 tagttgattt tagaggaatt agtcctttta ttgatgaaga attttcacca gaatggaatt
     6301 tatttgtttc acgtgaaaca aatagtgcgc gaggcattgt atttggcgag tttcagctag
     6361 gtaacatggt cgttggtgaa gtagttgaat gtgggagcaa agtaacagaa tacgagcttg
     6421 gagatattgt ttgttcttac ggaccgatta tggaaactgt tattgtaaaa gctgtcgata
     6481 attataaact acgtaaattg ccaaaaggtg ctaattggaa aaacgcggtt tgctatgacc
     6541 cggctcaatt tgcgatgagt ggcgtgcgtg atgcacatgt tcgtgcgggc gattatgttg
     6601 ttgttgtcgg acttggtgcg attggtcaaa ttgcgattca actggcgaaa aaagctggag
     6661 caagtgttgt tatcggggtg gatccactta gtcatcgtcg tgaaattgct gaaaaacatg
     6721 gagcagatgc tacttttgat ccaattacga cagatgttgg cttagaagtg aagcgtctta
     6781 ctggtaaact tggtgcggat tcgattattg aaacgagcgg gaatgcggct gcacttcaag
     6841 cggcactacg cggaatagct tacggcggaa caatttctta tgtagccttc gcgaaacctt
     6901 tcccagaagg atttaatctt ggtcgggaag ctcatttcaa caatgcgaaa attgtctttt
     6961 cacgtgcggc tagtgaacca aatccggatt atccgcgctg ggatcgtaag cgtatcgagg
     7021 agacttgttg ggaactactg atgaacggtt acttggattg ttcggacatt attgatccag
     7081 tcgttccgtt tgcagattca gctgagagct acatgaaata cgtcgatcaa caacctgatt
     7141 taagtattaa aatggggatt accctttaag gagcgataat aatgaaatta ggcacacaaa
     7201 accaagcatt tttcccagaa aatatagaag aaaaatttgc ttatgtaaaa gaaatgggct
     7261 ttgaaggttt tgaaattgat ggtaaattac ttgttgaaaa tttggacgaa gtgaagaaag
     7321 ctatcgaaaa aacggggcta cctgttagta ctgcatgtgg tggctatgac ggctggattg
     7381 gtgacttcat tgaagagcgc agactgaatg gtttagaaga aattaaagcg attttagaag
     7441 ctttagcaga agtcggtggg caagggattg tcgttccagc ggcgtggggg atgttcacgt
     7501 atcgtcttcc gccaatggtt tcgccgcgta gccaagccgg agatttcaaa gcagtgagcg
     7561 agtcgttggt ttatttggac aaaattgctg gtgaaactgg gacgaaggtt tatcttgagc
     7621 cgcttaacag ataccaagat catatgatta atttgctaag tgatgcgcaa aaatatattg
     7681 atgaaaatga acttaaaaat gtagaaatta tcgctgattt ctatcatatg aatattgaag
     7741 aagatagcat tccgactgtg cttgagacgt ataaagattc gatcggtcac attcatgttg
     7801 ctgacaatca tcgctaccaa ccaggaagcg gtagccttga ttttaaaaca agttttgatc
     7861 aactgaaaaa gaacggttac aacggatttt taacttttga atgtcgtgtt cgcagtgaaa
     7921 atccagaaca agcttataaa gatgcgttgg cacatttaaa aagctgttta atttaaaata
     7981 gaaaatccgt cccaattaaa gcggacggat ttttctaaaa ggagtttcgg atatgaagaa
     8041 aagagttgca attatcggtg ctggacaagt cgctgagaag gtccacgctg cgtattataa
     8101 gacaagaaat gaactggagc ttgtagctgt ttgcgaccca agtttggagc gtggcgaaga
     8161 gtttcgtgcg aacaatggtt ttgagaagca ttatgctacg gcagaagaga tgtttgcggt
     8221 cgagaaaatc gatattatta gtatttgcac gcctaatcgg ttccattttg ataatgtgat
     8281 gttgtcacta gcgaatggag cggccgttat gtgtgaaaag ccacccgcaa tgagtgcggc
     8341 ggaagcgaaa gcaatgtggg aacttgcgga agaaaaaggc gcgattttgg cgtatgattt
     8401 tcatcatcgt ttttccagtg aagcacagtt tttaaagaga aattcggcgc ttctaggtga
     8461 aatttattgt gtgaaagcaa ctgcgcttcg tcgttctggc gtgccgggtt ggggaacttt
     8521 tacgaataaa gaaatgcaag gcgggggtcc gctgattgat atgggaattc acatgctcga
     8581 cgcggcgatg tttgtccttg gttttccaaa agtgaagaaa gtaacggcaa aaagttttca
     8641 aaaaatcgga accaagaaaa gtgcggggac atttggttca tgggatccgg aaaaatatac
     8701 ggtagaggat tctttattcg gctttattga actggaaaat ggaggattaa ttgaattaga
     8761 tacttctttt gcgctacata tcaagccaga aagtgcgcta aatgttgatt ttttcggtga
     8821 tttagcagga ggaagtttat acccggctga aatttataca gataatgcag gtgaatttca
     8881 gttgttagag aagttaggac aactggaaga aaataaacac gaaaacagca tgaaagcatt
     8941 tgttgatagc gttcttggtg ctggaaaagt ggaacttgct ggcgctgaac aaggttatat
     9001 catacaaaga attgttgaaa gtttatacga atcggcagaa aaaggtgaga gtgtttcttt
     9061 atgaagaaaa taatcgagaa ggaatttgca ttaaattatc taaataaata tggtagccaa
     9121 atgactgtgg gaaatggcta tttgggcgtg cgcggtgctc ttgaagaaga atatccggag
     9181 caagttcgcg gtatgtatgt ggcggggatt tataatcgtc cgagcggttc gctgagttcg
     9241 gaacttgtta atttgccgga tgtgacgcgt ttccaagtga tgcttgatgg ggaaaatttt
     9301 tcgatgcaag cggggaaagt ccatgcttac gagcgttatt tagatatgaa tacaggagaa
     9361 ttaattcgaa aaattacttg ggaaagtagc gcgggcaaga agtatcaact gaattttcac
     9421 cgatttgttt caaaagcagc aaagcacgtc attgctgcta aagtggagat aatgcctttg
     9481 agcggtgcgg cgaaagtcaa agtaaaaact ggtattgatg cgcaacaaac taattttgga
     9541 acacagcagc tggcggagtt gagtctacga atttttgatg agaagttgat ggttggcgaa
     9601 tatgagacca tcgagagcaa acagcatatt acaatagcaa caaaagtgaa taaaaaaggg
     9661 attttcactg cgaaaaacag acaattaatg accgaagtag agcaagaaat cgctgaaaat
     9721 caactattta ctttggagaa aataagcatg gttaaaacat ccctggatca agtggatgcg
     9781 gaacttccaa atacgactta tgcagaattg aaaagagctt cggaaacttt atgggcagat
     9841 ttttgggagc atgcgggtgt ccgtgttgag agcacgaatg attttgacca atttgcacta
     9901 gattttgcgt gctatcactt agaaattatg acgccgaaag atgattttcg ttgtagtgtt
     9961 ggtgcgaagg gacttaccgg agaaggttac aaggggcatg ttttttggga tacagaaatt
    10021 tttattatgc catttttcct ttataataag ccggaaattg ccaaacaatt attaaaatat
    10081 cgctaccttc atttgaaaga agcgaaagaa aaggcaacga aaaacggcta taatggggcg
    10141 ctttttccgt gggaaagtgc attctctggc gaagaagaaa cgcctgaatt tgcagcgatt
    10201 aatattcgaa ctggcacacg tcaaaaagta gcgtcggcga tttcggagca tcatttagtt
    10261 gcggatattg cttatgcggt ttgtgaatat gaaacggcga ctaaggatgc tcagtttatg
    10321 aaagagtgtg gttcagagct gctccttgaa acagcggaat tttggctaag ccgtgcaact
    10381 aatcgtaatg gacgactgga aatccttgat gtgattggtc cagacgaata caccgagcat
    10441 atcgataata atacgtatac gaattatatg gcacactata atgtgaaaaa agctttagaa
    10501 tggaataaag ataatgcaga ttttgtagcc cgtgcagaag cttttcttga aaaaatctat
    10561 ttacctgtcg caaatgagtc tggcttaatt ccgcaagatg atactttctt agaaaaagat
    10621 tggataaatt tggataaata taaggcggca caaggaacac aagggattct actagattat
    10681 tctcgtcaag aagtgaacga actacaaatc ttaaagcaag cagatttagt catgttgttt
    10741 tacctgtttc cgaggatgtt tgcaccagat gctgtgaagc agaatttgga ttactatgaa
    10801 aatcgaacaa ttcatgattc ctctttaagt aaagcaatcc atgcaattgt agaaaatcga
    10861 actggaaatc gcgcacaagc ttatcaattt tttcaagagg cttgcttaat tgaccttggt
    10921 agtgagccac attcatcgga tgacgggctt catgcggcct cactcggcgc aatatggttg
    10981 gcggtggttt ttggatttgc gggtatagat actagtggag aactacttga aatcgcgcca
    11041 aacataccgg attcctggca atctgtggca tttgaattct cttggaaagg tgaaaaaatc
    11101 ttggtagaaa ttgcgcaaaa cagattacac ctttcaaaaa gcacaaaaag cgtgctagaa
    11161 ttagttattc acggagaaaa acatcaatta acagatacat taactattaa gttggatcag
    11221 aaggatgtgt ctttatgaaa attgtcattg caccggattc attcaaagaa agtttgacgg
    11281 cgcatgaggt ggcagagtat attaaagagg gctttcaaga aatttatccg gatgctgatt
    11341 atcatttact ccctgtcagt gatggcgggg aaggtacgct agagatttta agtaaagctt
    11401 taggtgcgaa aaaaatgaaa atcgatgtgt ccggcccttt tggtgaccca gtttcagcac
    11461 aagttgcttt tacggatggg aacaaaaaag ctttaataga aatggccgaa gtttgtggtt
    11521 tgcacttggt tccgacgact agacgcgatc cacttcaagt gagtactaaa ggagtgggcg
    11581 agctaatttt gcacgccatg gaaaaaggtg cgaccgagat tattattggg attggtggaa
    11641 gcgcttcaaa cgatggcgga attggcatgg ctagtgcgct tggttatgaa ttcctagatg
    11701 cagaaaataa tatcgtcaac ccgattggcg caaatttagc tgatatagca accattcgtt
    11761 ccgaaaaagt cccagctgaa ctagaaaaca tcacagtaaa tattgtgacg gatgtcgaaa
    11821 atccgctttg tggagaagct ggcgcatcgt atgtgtttgg tccacaaaaa gggctagccg
    11881 ttacagattt agcaacagct gatggggcaa tgcgccagtt ttatcagtta gcgaatcccg
    11941 ccatggttac aatgccgcga gcaggtgccg ggggtgggat tggtgctgga cttgtgacgt
    12001 ttgcaaaagc taacctttta tcgggaattg attttgttat tgaagcactt caaatcaaaa
    12061 ctgtttgtga ggatgcagat ttggtcattg taggcgaagg gaaaatggac gggcaaaccg
    12121 cacaagggaa agctcctgtg ggtgttgcga aagtagtgcc gaaagaaaca ccagtttttg
    12181 caatttgtgg aagtgttggt gagggactag aagcagtata tgaagtcgga atcagcgcag
    12241 tatttccatc cattgccaaa ccagcaactt tagaaaatat actgaaagaa acaccaaata
    12301 atttaagaag aaccgcgcga aatgttgcgg cagtttggaa aggacgagta gaatgacaac
    12361 agcattaaaa ggagtagttt tcgatttaga tggcgtcatc acagatacag cacattatca
    12421 ttacttagcc tggaaaaaaa cagctgagag tattggaatc gaatttgatg aagcatttaa
    12481 tgagaagtta aaaggggtaa gcagaattga ctccctactt cttattttaa agaaagacgg
    12541 ccgcgaaaat gactttacag aagagcagat tgaagctctt gcagctgata aaaatgactt
    12601 ttatgttagc ttgctaaaag aaattacgcc agcggatgtt ttaccaggaa ttaaagaact
    12661 tatagtggat cttaaaaagc aaaatctcaa atgcgcaatt gcatctgttt cgaaaaatgc
    12721 tcggacggta ttgagtgctc ttgaaatgga acaagaattt gattacattg ttgatgcggc
    12781 taaaattact aaatcaaaac ctgatccgga aatttttgtg gaagcatgtc gcggtttagg
    12841 tttagaaaca tcagaagtag ttgggattga agatgcccag gctggaattg aagcaattaa
    12901 tgcagctgga attgtaagcg ttggtgttgg ttctggactt cgtgatgcgg atatgacagt
    12961 gaaaaatact ggtttgctag atttacgtat tttagagata ttacatagca aataaaatgt
    13021 ttcacgtgaa acaaaagtgt caaaaaatga acaaaaagca agatatattg ctattctaaa
    13081 accctttgct tgaccacaat acaactttgg aatattctga atgtgaggtg gatatgtatg
    13141 gcgattattt ttgcaaaaga agagaacttg gaagagatta ttagtagcca tcctaaaata
    13201 ttacttaatt tttgggcaga gtggtgcgca ccgtgtcgct gcttttggcc aacacttgag
    13261 caattcgctg agatggaaga aggtaatgtc caagttgtga aaattaatgt agataaacaa
    13321 cgcgcattag ctcagaaatt tgatgtaaaa ggaataccaa attcgcttgt tcttgttgat
    13381 ggagaaatta aaggcgggat tgctggtatt gtaagttgtg atgaacttag aagcagattt
    13441 aaaagtttgg caaaataaaa attccgcgat accagttaat ggtcgcggaa ttttttgttt
    13501 cacgtgaaac atttattatt tgaaaacgcg gaaacgatca gcgtcatcga tgaattcttt
    13561 ttcgccagct tcttgaacga tgttaccaaa cggcatttgc gcgcgtaagt tccagcttgc
    13621 aggaatattc cattcagctt taacagcatc gtcaattagt gggttgtaat gttgtagaga
    13681 tgcaccaatt ccagcgtttg caagagcaac ccatactgaa tgttgtgcaa tacctgaaga
    13741 ttgttcagac catacaggga agttgtctgc atatagagcg aagttttctt gtaagccttc
    13801 aataacagca gtatcttcaa agaaaagaac tgttccgtat ccagcgcgga aagaaccaac
    13861 tttttcttct gtagctgcaa agttttcagc aggtacgata gcgcgtaatg tatcttctac
    13921 gatattccaa agtttatcat ggttttctcc taaaagaatg acagcgcgag agctttggga
    13981 gttgaatgaa gatgggctat atttaacagc gtctttaata atttcttcaa ttttggaatc
    14041 ctcaacggaa acgtttttat ctagtgcata aatggaacga cgaactttaa tagaatctaa
    14101 aaatgtatta gtca
//
LOCUS       DASEAA010000060        13848 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.060, whole genome shotgun sequence.
ACCESSION   DASEAA010000060 DASEAA010000000
VERSION     DASEAA010000060.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13848)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13848)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13848
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.060"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            425..796
                     /locus_tag="U0342_001504"
     CDS             425..796
                     /locus_tag="U0342_001504"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2422850.1"
                     /translation="MNYTIGAFSREVELSIDTLRYYEKEKLILPKRNEINRRIYDSSD
                     ITWINFIKKLKQTGMPIKDIKEYAKLRYLGDQTIEQRMTLLYKQYDVLVEKREEIELY
                     TQFLLNKIDIYKEMLSARDIK"
     gene            880..1653
                     /locus_tag="U0342_001505"
     CDS             880..1653
                     /locus_tag="U0342_001505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765976.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2422851.1"
                     /translation="MKKYVVITGASSGIGYATAKGFAKRKNNLILIARREANLLKLKN
                     EIEKEVPEIEVLIKAIDLTKIDRLEKLFSELDPYFIETWINNAGLGYYSEVKNQSLTK
                     TLQLLHLNIEALTVLSVLYVRKYHDQSGTQLINVSSAGGYTMVPAAATYCASKFYVSS
                     FTEALSLELRESCSPLQAKVLAPAATKTEFGQKANDVSDYDYDKKFNNYHTSDEMAQF
                     LLDLYDSDKIVGMIDRKAFSFTLTENLFSYANQASSNQK"
     gene            complement(1716..2789)
                     /locus_tag="U0342_001506"
     CDS             complement(1716..2789)
                     /locus_tag="U0342_001506"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2422852.1"
                     /translation="MKQLLKIFVPVIVVALLMMLLATTMNRSEGYAGSNTLTIYNWGD
                     YIDPSLITKFEKETGIKVIYQTFDSNEAMMTKIEQGGTTFDIAVPSDYAISKMKEENL
                     LIPLDHSKLPNEKYLDPRFMDLSFDDDNKYSMPYFWGTLGIIYNKEMFPDKNFDTWNA
                     LFDPELKNQILLIDGAREVMGLGLNSLGYSLNDTNKAHLQAARDKLETMTPNVKAIVG
                     DEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTAKNVD
                     GAHKFINFMLKPENAAINAEYVGYATPNEKAVKLLPKEISSDERFYPDMDELNNLEVY
                     DNLGKRMLSYYNELFLEFKMYRK"
     gene            complement(2786..3592)
                     /locus_tag="U0342_001507"
     CDS             complement(2786..3592)
                     /locus_tag="U0342_001507"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422853.1"
                     /translation="MKKSKWGTIYLVLVFVILYAPIFYLIFYSFNKGGTMHNFSGFTL
                     GYYKEVFQDTRLLIIVLNTFVIALLSSVIATIIGVCGALAIKFMPKPFAKNSLLSLNN
                     VLIVSPDVIIGASFLIFFTILGVKLGFISVLVSHIAFSIPIVVLMILPKLQEMSPTLM
                     DAARDLGASQWQVLSKVILPYIMPGVLAGFFMALTYSLDDFAVTFFVTGNGFSTLAVE
                     IYSRARQGISLSINALSTLIFLFTIILVIGYYFINQRNTSKNIRTGATKE"
     gene            complement(3589..4398)
                     /locus_tag="U0342_001508"
     CDS             complement(3589..4398)
                     /locus_tag="U0342_001508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2422854.1"
                     /translation="MNRRTRTVYLVPYVLWILLFVVAPILLIVYYSFFDVDGNFTVDN
                     YIHFFTPVYLKMTASSFWYAFLITVFTLLISYPTAYLLTKLKHKQLWLLLIILPTWIN
                     LLLKAYAFIGIFGTYGAANQFLEIIGIGSKQILFTDFSFLFVSTYIFIPFMILPIFNA
                     IEEINPTLIQASRDLGASSLTTFRRVIFPLTADGVKSGCQAVFIPALSLFMITRLIAG
                     NRVITLGTAIEEHFLVTQDWGMGSTIGVFLIIAMILIMFLTGSKKKRGARK"
     gene            complement(4398..5492)
                     /locus_tag="U0342_001509"
     CDS             complement(4398..5492)
                     /locus_tag="U0342_001509"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464334.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2422855.1"
                     /translation="MTETIIRFENVTKQFDNDPPVLDNVSFEIEKGKFYTLLGPSGCG
                     KTTILRLIAGFLEASEGQIYLGDKVINQIPANKRPVNTVFQDYALFPHLNVYENVAFG
                     LRIKKLKKDAIDEKVKEALRFVNLKGYEKREISEMSGGQRQRVAIARAIVNEPEVILL
                     DEPLSALDLKLRTEMQYELRDLQKRLGITFIFVTHDQEEALAMSDEIFVLNKGEIQQS
                     GTPIDIYDEPINKFVADFIGESNIVNGKMIQDFEVEFVERRFECVDQGFRPNEVVEVV
                     IRPEDLEITSAEKGQLQVTVDWMLFRGVHYEVGCIDTDGNEWLVHTTRKVRVGDKIGL
                     AFEPEAIHVMRLGETEEEFDKRLDSYDEVQ"
     gene            complement(5508..6050)
                     /locus_tag="U0342_001510"
     CDS             complement(5508..6050)
                     /locus_tag="U0342_001510"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2422856.1"
                     /translation="MEIGKRIKNLRLSKNLTQEELGERTDLTKGYISQLERDLSSPSI
                     ETLFAILEVLGSTPKDFFDEEEHNQKVIYGELEHTFFEDEEKGYRIKWLVPESNEKEM
                     EPVLLEIEANSCFKSFEPSLSETFAYVLKGEVTVLLGRNEYVAKKGEAIYFHAADEHQ
                     IINRSNEQATLILVATESYL"
     gene            6260..6718
                     /locus_tag="U0342_001511"
     CDS             6260..6718
                     /locus_tag="U0342_001511"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422857.1"
                     /translation="MKKYRFSELNINIGTVLLIIMISFTFITFIIIGMTLPVPWEYFV
                     ILFVIALMFSVFFKRLFPSNFSVSEEAFYYKEKAYPYSEYLIECDAKLIRFNGGSRGM
                     PYYRIVIINKDTRAEKLIRVYNAERRYKNANKHMQELMEELRNEINQYQA"
     gene            6746..7219
                     /locus_tag="U0342_001512"
     CDS             6746..7219
                     /locus_tag="U0342_001512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isoleucine--tRNA ligase"
                     /protein_id="HEM2422858.1"
                     /translation="MKSYPFFKYNMNIKTFFMFIVCFAILSLGLYFFITFESLRIWQF
                     FGIYTFFSAYTIYVLTTYVNGTVSVNSHALFYKKGFSDKKYLFNQYMLECDTRLHGRT
                     TSFLPFYTINILDLETGKETKIKIRNAAIVHRNGRKNFHLEIVNLAEQLKKIQAK"
     gene            complement(7259..9307)
                     /locus_tag="U0342_001513"
     CDS             complement(7259..9307)
                     /locus_tag="U0342_001513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter"
                     /protein_id="HEM2422859.1"
                     /translation="MEIFLYVLALLVAIFISNLLNRFVPFVSVPLIQIGLGVLIAIMP
                     ITFDLQLNPELFLVMFIAPLLFNDGRQTDKAALWGMRMPILVLALGLVFATVVVIGYF
                     VHWMIPTIPLAAAFALAAALAPTDAVAVSSLSGRINLPKRIMNLLEGEALINDASGLV
                     AFQFAIAAMVTGVFSFMDASISFFVIAIGGILVGLILSWLKFRLLKWVRGLGMEDVTF
                     HMLIQILTPFIIYLAAEEIHVSGILAVVAAGIMHSMEQKKMDPQSVKLNVVSQSTWSV
                     IIFVLNGLVFLLLGTQLPAITEVVWNDSGSSNLQVMAYILSITAALILLRFLWVYISW
                     SIGAKQRQKQNKKTQLPKFRPVVLTSLSGVRGAVTLASALAIPFFLDDGSLFPQRSLI
                     IFIASGVILCTLVIATFILPLLAKSEEVTTEDERAETATRIRILRNVIRELKEQTLPE
                     TKAATDEVIEDYRRRIYDLQQNNSSNRGMDERERAKRLEIIQWERENTQKMTDEGRIV
                     ATDSYRYQHYLNMMEQAIKQRFRTKIKTAWMFLYRLIMLVIHPKKWGRITHKVKKGIS
                     KDSERFQAIRQLREENEVLIISKLKEQLTKENVDIIGPLITEHTIFLERVRKEHSPRG
                     KRAKFEQKKREVQVLAFQLERDIIQNMFEKGGISRDLARDLRQNLNMIETYLYDDFLE
                     "
     gene            complement(9436..10074)
                     /locus_tag="U0342_001514"
     CDS             complement(9436..10074)
                     /locus_tag="U0342_001514"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM2422860.1"
                     /translation="MEQPSVDELKNWRNVMLLHRFALEEVNTKLKILNEEFQFIHDYN
                     PMEHLKSRVKSLESIGAKLEKKKVDITPENALKYVHDIAGIRITCSFVSDIFRIHEML
                     AGQSDITIKRVKDYVTNPKPNGYRSLHLLCEVPVFLTNRSEKMTVEIQIRTVAMDFWA
                     SLEHKIYYKYQQEAPIELVKELQDAARIITHLDEKMKNLNDQIDQYKKEKEK"
     gene            complement(10229..10582)
                     /locus_tag="U0342_001515"
     CDS             complement(10229..10582)
                     /locus_tag="U0342_001515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929440.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422861.1"
                     /translation="MYITFTDSAKNRLAALRSNLEGRLHLYYDTEGCSCENSGIFTLR
                     LVEEKTAEDDEIESNIGPVLIKRWTEMFLEEALTIDYNDTEKTMILKSDGQYYNRNLL
                     LVTNTDEVISCPVTS"
     gene            10735..11496
                     /locus_tag="U0342_001516"
     CDS             10735..11496
                     /locus_tag="U0342_001516"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464326.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="blue-light photoreceptor"
                     /protein_id="HEM2422862.1"
                     /translation="MTAYPQFDVILKALNLSSVGVIITDPEQKDNPIIFVNTGFENIT
                     GYAKEEALGSNCHFLQGDDTDKKEVAKIRHAINEKSTANVLLKNYRKDGTSFMNELTI
                     EPIYDDHNHLYFVGIQKDVTTEHDYQLELEKSLTEIEKLSTPIVPIKENICVLPLIGS
                     LTHDRFQHMSEYVSEYMDHGKEDYLIMDLSGLAEFNEDAVMNLVKFHGFMKLTGVELI
                     ITGISPKFAMTLIRYEENLASLTTYSTIKEALQFY"
     gene            11852..13312
                     /locus_tag="U0342_001517"
     CDS             11852..13312
                     /locus_tag="U0342_001517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464325.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2422863.1"
                     /translation="MKKETHGEIRRDLKTRHLSMIAIGGSIGTGLFLASGNAIHTAGP
                     GGALVAYIAIGIMVYFLMTSLGEMATYMPVSGSFSTYASRFVDPAFGFALGWNYWFNW
                     AITLAVDISTAAIIVQFWLPNTPAWLWSAIFLILIFGLNALSVKAYGESEYWFSIIKV
                     ATVIIFLIVGVLTIVGILGGEVIGFSNFTAGDAPFKGGFFAILGTFLIAGFSFQGTEM
                     VGIAAGESATPETSVPKAIKQVFWRILLFYIFAIFIIGMIIPYTNPNLLSAEATDVAI
                     SPFTLVFEKAGLAFAASVMNAVILTSVLSAGNSGLYASTRMLWAMARDKKAPKFLGKV
                     NRRGIPMAALIVTTIVGAMTFITTLTENGTVIYTWLLSASGLTGFIAWVGIAISHYRF
                     RKAFIKQGHDLSELKYKAKFFPFGPILALILCILVIVGQDYAAFLKPEFTNPAWWQKI
                     GISYIGLPIFLVFWLSFKFTNKTKVIPLEDCKFDQK"
     gene            complement(13364..13825)
                     /locus_tag="U0342_001518"
     CDS             complement(13364..13825)
                     /locus_tag="U0342_001518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464324.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2422864.1"
                     /translation="MVGINTDTENISELLKTYWSIQRISAGYADQNAASLGLTIQQLA
                     MINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLKL
                     SKKGEDLSKRSTANAFMYKAMMKVFENLTENEIEELIRLNKKVETLLKKSK"
BASE COUNT         4273 a         2717 c         2376 g         4482 t
ORIGIN      
        1 acttccatct tttccctttt attttcggta aatcatatac ttcaataata atttattata
       61 ttacgatagc attcgtttac caaggttatc tgtacttcta aactagtaat cttatccata
      121 tataggtaaa caggttcatc acttgaaatt tctttttgta ataatttgac ttctttttca
      181 tttggtgttg cgtagctgac atattcagta ttaattgtgg tattctcaga gtttagcatg
      241 aattaataaa tttatacgtg ccaaccgttt cattgtccac catgagaagt ttaatctcat
      301 ccaaatttat ctctggcagc ttgcaaaggg acttacgagt attccaaact atctttcccc
      361 gctccttttt atgtagtatg ctggagttaa caccatatcc atttaaaata ggagatgatt
      421 actcgtgaat tacacaattg gtgcattttc aagagaagtg gagttatcaa ttgatacatt
      481 acgatattat gaaaaagaaa aactaatttt accaaaaaga aatgagatta accgtagaat
      541 ttatgatagt tcggatatta cttggattaa cttcataaaa aaattaaagc agacaggcat
      601 gccaattaaa gatattaagg aatatgcaaa acttcggtat ctgggagatc aaaccatcga
      661 gcaacgaatg actttgttat ataagcaata cgatgtttta gttgagaaaa gggaagaaat
      721 tgagctatac actcagtttc tattgaataa aatagatatt tataaggaaa tgttgagtgc
      781 acgagatatt aaataatttt tgctcgtata agaagagttg acatggtgtt aactccagca
      841 tttatagtta ctccatacta aatgctagga ggaattgcca tgaaaaaata tgttgtcatc
      901 acaggtgcga gttccggcat cggctatgct accgctaaag ggtttgcaaa acgcaaaaat
      961 aatctcatct taattgccag aagagaagct aatttgttga agttgaaaaa tgagattgag
     1021 aaggaagtac ccgaaattga agtcctaatc aaagcgatcg atttgacaaa aatagaccgt
     1081 ttagagaaat tattttctga attggatcct tatttcattg aaacatggat aaataatgct
     1141 ggtctaggat attatagtga agttaaaaac cagagcctaa ctaagacttt acaacttctt
     1201 catttgaata ttgaagcatt aacagttcta tcagtcttgt atgttagaaa gtatcatgac
     1261 caatcaggta cacagctaat taatgtttct tcagcaggcg gctatacgat ggttcctgcc
     1321 gcagcaactt attgtgctag taaattctat gttagttcct ttactgaagc attaagtttg
     1381 gaactacgag aaagctgctc tccacttcaa gcaaaagtat tagcaccagc tgctaccaaa
     1441 accgaatttg gacaaaaagc aaatgatgta agcgactatg actatgacaa aaaatttaat
     1501 aattatcata caagtgatga aatggcccaa tttttattgg atttgtatga cagcgacaaa
     1561 attgtcggca tgattgatag gaaagcattc tcatttactt tgactgaaaa tttgttttca
     1621 tacgcaaatc aagcctcttc taatcaaaaa taaggaattg taaaaaaaag actcttgtat
     1681 cataatacaa gagtctaatt gtttgagatg aagctttatt tccgatacat cttaaactcc
     1741 aaaaataatt cattataata cgacagcatt cgtttaccga ggttatcata tacttctaaa
     1801 ttattcagtt catccatatc cggataaaaa cgttcatcac tagaaatttc ttttggtaac
     1861 aatttgacgg ctttttcatt tggtgttgca tagccgacat attcagcgtt aattgcggca
     1921 ttttctggtt ttagcatgaa gttaataaat ttatgcgcgc catcgacatt tttcgccgtt
     1981 tttggaatga ccatgttgtc gaaccataaa ttcgagccgt cttttggaat tacgtattct
     2041 aaatcttcat tttcacttaa catttccgcc gcttctccgg agaaagtaac cgcgacaccc
     2101 gcctcattgt ccgccatgag aagtttaatc tcatcgccaa caattgcttt tacattcggt
     2161 gtcatcgttt ctagcttgtc tctggcagct tgtaggtgag ctttattcgt atcgttcagt
     2221 gagtaaccga gactattcag cccaagcccc atcacttcac gcgccccatc aatcagcaaa
     2281 atttggtttt tcaattcggg atcaaatagc gcattccacg tatcgaaatt tttatccggg
     2341 aacatttctt tattataaat aatgccaagc gttccccaga aataaggcat cgaatattta
     2401 ttatcatcat caaacgataa atccataaaa cgcggatcaa ggtatttttc atttggtaat
     2461 ttggaatgat caagtgggat caacaaattt tcttctttca ttttgctaat cgcgtaatca
     2521 cttggcaccg caatatcaaa ggtcgttcca ccttgctcaa ttttcgtcat catcgcttca
     2581 ttagaatcaa atgtttggta aatgaccttg atgcctgttt ctttttcaaa tttagtaatg
     2641 agcgatggat caatgtaatc gccccagtta taaatagtca gcgtattgct cccagcatag
     2701 ccctcagagc ggttcatcgt tgttgcaagt agcatcatta ggagtgcgac aacaatgact
     2761 ggcacaaaaa ttttcagcag ttgcttcatt ctttcgtcgc ccccgtccga atatttttac
     2821 ttgtattacg ttggttgata aagtaataac cgatcacgag aataatcgtg aataagaaaa
     2881 tcagtgtcga caaagcattg atagaaagcg aaatcccttg tctagctcgg gaataaattt
     2941 ccactgccaa tgtcgagaag ccatttccag ttacaaagaa cgtcaccgca aaatcatcta
     3001 gcgagtacgt taatgccatg aaaaatccag ctaaaacgcc tggcataata tacggcaaaa
     3061 taaccttaga aagaacttgc cactggcttg cacctaagtc gcgcgccgca tccattaacg
     3121 tcgggctcat ttcttgcaat ttcggcaaaa tcatcaatac gacaatcgga atactaaagg
     3181 caatatgcga cactaggacg gaaataaacc ctaattttac gcctaaaatc gtgaagaaaa
     3241 tcaagaaact agcaccgata ataacgtccg ggctaacaat caacacatta ttcaaactta
     3301 aaagcgaatt tttcgcgaat ggttttggca taaatttaat cgccagcgcc ccgcaaacgc
     3361 cgataatagt tgcaatcacc gaagaaagca gcgcaattac aaatgtattt aaaacaataa
     3421 ttagtaggcg cgtatcttgg aaaacttctt tataatagcc aagcgtaaag ccactaaaat
     3481 tatgcatcgt gccgccttta ttaaacgagt aaaaaatcaa atagaaaatc ggcgcatata
     3541 aaatcacaaa aacaagcact aaataaatcg taccccattt acttttcttc atttacgcgc
     3601 acctcttttc tttttcgagc ctgttaggaa cataattaaa atcatcgcaa taattaaaaa
     3661 tacgccaatt gtcgaaccca ttccccagtc ttgcgttact aggaaatgct cttcaatcgc
     3721 tgttccgagc gtaatgacgc ggtttcctgc aattaatcgt gtaatcataa agagtgatag
     3781 tgctggaata aaaacagcct gacaccctga tttcacgcca tcagcagtga gcgggaaaat
     3841 cacccgtcta aatgttgtca aactagatgc gcctaaatcg cgcgacgctt gaatcaacgt
     3901 cggattaatt tcctcaattg cattaaaaat cggtaatatc ataaacggaa taaaaatata
     3961 ggtcgataca aataagaaac taaaatccgt aaataaaatc tgtttcgaac caattccaat
     4021 tatttccaaa aattgattcg ccgccccgta tgtcccaaaa atcccaataa aggcatacgc
     4081 tttaagcagc aaattaatcc aagttggtaa aataataagt agcaaccaca attgtttatg
     4141 ttttagtttc gttaataagt aagccgttgg atacgaaatc aacaacgtaa aaacagtaat
     4201 taaaaatgcg taccagaacg aactagccgt catttttaaa tatacaggcg taaaaaagtg
     4261 aatataatta tctaccgtaa aattgccatc tacatcaaaa aaagaataat aaacaattaa
     4321 taaaatcggc gcgactacaa aaagtaaaat ccaaagtaca taaggaacaa ggtaaactgt
     4381 acgggtgcgt ctattcatca ctgcacctca tcgtagctat caagccgctt atcgaattct
     4441 tcctccgttt ccccgagacg cataacatga attgcctctg gttcaaacgc taagccaatc
     4501 ttatcaccca cacgaacttt tctcgttgtg tgaacaagcc attcatttcc atcagtgtcg
     4561 atacaaccta cttcataatg cacaccacgg aaaagcatcc agtctacggt tacttgcagt
     4621 tgaccttttt cagccgaagt aatctctaaa tcttccggac ggataactac ttccacgact
     4681 tcatttgggc ggaaaccttg gtcgacacat tcaaaacgtc tttccacaaa ttccacttcg
     4741 aaatcttgta tcattttgcc attaacaatg ttcgattcgc cgataaaatc tgcgacaaat
     4801 ttattaattg gctcgtcgta aatatcaatt ggcgtaccac tttgttgaat ttcgccttta
     4861 tttaacacaa aaatttcatc actcatcgca agtgcttctt cttgatcatg tgtcacaaaa
     4921 ataaacgtaa ttccaagacg cttttgcaaa tcgcgcaatt catattgcat ttccgtacgt
     4981 agttttaaat caagcgctga tagtggctca tcaagtaaaa taacttctgg ttcattgacg
     5041 attgcccgtg caatcgcgac acgttgtctt tgtccaccag acatttcgct aatttctctt
     5101 ttttcgtagc cttttaagtt aacaaagcgc agtgcttctt ttactttttc gtcaattgca
     5161 tcttttttta gctttttaat acgcagacca aaagccacat tttcatacac atttaaatgt
     5221 ggaaataacg cataatcttg gaaaacggta tttacaggac gtttattggc tggaatttgg
     5281 ttaattactt tatcccctag ataaatttgt ccctctgaag cttctaaaaa tccagctatt
     5341 aagcgcaaaa tggtcgtttt cccgcaacca gatgggccaa gtaaagtata aaacttccct
     5401 ttttctattt caaagctgac attgtcaagc actggtggat cattatcaaa ttgttttgtt
     5461 acgttttcaa aacgaataat tgtttctgtc acaatcattt acctccctta taaatatgac
     5521 tctgtcgcta ctaagatgag tgtcgcttgt tcattcgatc gattaattat ttgatgttca
     5581 tctgcggcgt ggaaataaat tgcttcccct tttttggcta catactcatt tcgaccaagc
     5641 agcacggtca cttccccttt tagcacgtag gcaaaagttt ctgaaagtga tggttcgaag
     5701 cttttaaaac agctatttgc ctctatttca agtagcactg gttccatttc tttttcattc
     5761 gattctggaa caagccactt aattctgtaa cctttttctt catcttcaaa gaaagtatgc
     5821 tctagttctc cgtaaattac tttttgattg tgttcttctt catcaaagaa atctttcgga
     5881 gtagaaccta acacttccaa aatagcaaat aacgtttcga tagaaggaga actcaaatct
     5941 cgttctagct gagaaatata tcccttcgtc aaatccgttc gttcgcctaa ttcttcttgt
     6001 gtcaaattct tactgagcct aagatttttt atgcgtttgc caatttccat gtcaatgtcc
     6061 tttctttcaa gtttagtgat agtaaacctc aagtcacaga agtttactaa tattaaacac
     6121 gaagtttact tacagcaagc tacattatac aacaaagctt ccacatgaac aatagttttt
     6181 ttgaatttcc ctaagataga caacgtttat ttttagtgct aaaatttctt taataaaaca
     6241 gcttaggtgg cagatattca tgaaaaaata tcgcttttca gaactcaata tcaatatagg
     6301 taccgtgctt cttataatta tgattagctt tacctttatt acttttataa taattggaat
     6361 gacacttccg gtaccatggg aatattttgt tattcttttt gtcatagccc tcatgttctc
     6421 agtatttttc aagaggcttt ttccaagtaa cttttctgtt agtgaagaag ctttttacta
     6481 taaagaaaaa gcatatcctt atagcgaata tcttatcgaa tgcgatgcta aattaattcg
     6541 ctttaatgga ggctccagag ggatgcctta ctatcgaatt gttatcataa ataaagatac
     6601 acgcgcagaa aaactaattc gagtatacaa tgcagagcgt agatacaaga acgcaaataa
     6661 gcatatgcaa gaactaatgg aagaactgcg taatgaaatc aatcaatatc aagcttaact
     6721 aaaacatctt aggtggtgca caaaaatgaa aagctaccct ttctttaaat ataatatgaa
     6781 tatcaaaaca ttttttatgt ttattgtttg ttttgcaata cttagccttg gactgtattt
     6841 ttttattacc tttgagtcac tccgtatttg gcaatttttt ggtatatata ccttttttag
     6901 cgcgtatact atttacgtac tgactactta tgttaatggt actgtttccg ttaatagtca
     6961 tgcgctcttt tataaaaaag ggttttcgga taaaaagtat cttttcaatc aatatatgct
     7021 ggagtgtgac accagattgc acgggcggac cacttctttt cttccctttt acacaatcaa
     7081 tattcttgat ttagagacag gtaaagaaac aaaaattaag attcgtaatg cagctatcgt
     7141 tcacagaaat ggcagaaaga acttccattt agaaatagta aatctcgccg aacaattaaa
     7201 aaaaatacaa gctaaataga aagccctaag aacaagacac tgttcttagg gctttttgtc
     7261 attctaaaaa atcatcatat aaatatgttt caatcatatt taaattttgg cgtaagtctc
     7321 gggctaagtc tctcgagatc ccgccttttt caaacatatt ctgaataata tcacgttcta
     7381 attggaaagc cagcacttgg acttcgcgtt ttttctgttc gaattttgct cgcttacctc
     7441 ttggactgtg ctcttttctt acgcgttcta ggaaaatagt atgttcggta attaatgggc
     7501 caatgatatc aacattctct ttcgttagtt gttctttgag tttagaaata atgagtactt
     7561 cattttcttc gcgtaattgg cgaattgctt ggaatcgttc gctgtcttta gaaatacctt
     7621 ttttcacttt atgcgtgatt ctaccccatt ttttcgggtg aatgacaagc attattagac
     7681 gataaaggaa catccaggct gtttttattt ttgtccggaa gcgctgtttg atcgcttgtt
     7741 ccatcatatt aagatagtgt tgataacgat agctatctgt agcaacaatg cgtccttcat
     7801 cggtcatttt ttgggtgttt tcacgttccc actggatgat ctctaatcgt ttggcacgtt
     7861 ctctttcatc catgcctcga ttcgaactat tattttgctg taaatcgtaa attcgtctgc
     7921 gataatcttc aattacttca tccgttgccg ctttcgtttc aggtagcgtc tgttctttta
     7981 attccctgat tacgtttctc aggattcgaa tccgggttgc agtttcagct cgttcatctt
     8041 ccgttgtcac ttcttcactt ttggcaagta acggtaaaat aaatgtcgca atcactaatg
     8101 tacaaagaat aacacctgat gcgataaaaa taattagcga gcgctgcgga aatagtgatc
     8161 cgtcatctaa gaaaaacggg attgcgagcg cactggcaag tgtaactgcc ccgcgaacac
     8221 cagaaagcga tgtaagtaca acgggtctaa acttaggtag ctgtgttttt ttattttgtt
     8281 tctgtctttg ttttgcgccg atgctccacg atatgtatac ccataaaaag cgcagtaaaa
     8341 ttaaggcagc tgtgatagac aaaatgtaag ccatcacttg taaattacta cttcctgaat
     8401 cattccaaac tacttctgta atcgcaggaa gttgtgtgcc taaaagtaaa aatactaaac
     8461 catttaaaac aaaaatgatc accgaccaag tactttgcga aacgacattt aatttcaccg
     8521 actgaggatc cattttcttt tgttccatcg agtgcataat tccggctgca acaactgcca
     8581 aaatcccaga aacatggatt tcttctgccg ctaagtaaat aataaatggt gttaaaattt
     8641 ggataagcat atgaaacgta acatcttcca tgccaaggcc gcgaacccat tttaacaatc
     8701 ggaattttaa ccaactcaaa atgagcccaa ctaaaatacc accaatcgca atgacaaaaa
     8761 agctaatact tgcatccata aaactgaaaa cgccggtcac catcgctgca atcgcgaact
     8821 ggaatgccac gagtcctgac gcgtcgttga ttaatgcctc accttcgagc aaattcataa
     8881 ttcgtttcgg taaattaatc cgcccagaaa gagaactaac tgctacagca tccgttggcg
     8941 caagagccgc tgctaaggca aaagctgctg ctagtggaat cgtcggaatc atccagtgga
     9001 caaaatatcc aatcacgaca accgttgcaa atacaagtcc gagcgctaat actaaaatcg
     9061 gcattcgcat accccaaaga gctgctttgt ccgtctgtct tccgtcatta aatagcaatg
     9121 gcgcaataaa catcactaga aaaagttctg gatttaattg caaatcaaac gtaatcggca
     9181 taatggcaat taatacacca aggccaattt ggattagtgg taccgaaaca aagggaacaa
     9241 accggttgag taaattagaa ataaagatgg ccacaagtaa tgctaaaaca tataaaaata
     9301 tctccaatat gtatcgtccc ctttcgtttt ttctcctata ttattatgaa gcaaaataac
     9361 ctaactcgca aatataaaac agctttattt ctatgcatcc atcccgcttg caaagaaata
     9421 aagctcccta ttagattatt tttctttttc ttttttatat tgatcaattt gatcgtttaa
     9481 gtttttcatt ttttcatcta aatgggtgat aattcgtgcg gcgtcttgta attcttttac
     9541 taactcaatt ggtgcttctt gttgatattt ataataaatt ttatgctcca aactcgccca
     9601 aaaatccatg gcaactgtcc gaatttggat ttccacggtc attttctcgg aacgatttgt
     9661 caggaataca ggtacttcgc aaagtaaatg taaactccga tagccattag gttttggatt
     9721 cgttacatag tcctttactc gtttgatagt gatatcactt tgccctgcaa gcatttcgtg
     9781 aattctaaaa atatctgaaa caaaagaaca agtaatccga atgcccgcaa tatcgtgtac
     9841 atattttagt gcattttctg gcgtgatatc cacctttttc ttttctaatt ttgctccgat
     9901 actttctagt gacttcacac gtgacttcaa atgttccatt ggattataat catgaataaa
     9961 ttgaaattct tcattcaata tcttaagttt cgtgttgact tcttctaacg caaaacggtg
    10021 aagaagcata acatttcgcc aattttttag ctcatctact gatggttgtt ccatgaggac
    10081 actccttcca tatgtataaa cttcctattc catgttacta caaaaccgag gtcagtgtaa
    10141 ctatatgtct aaagtttcac cactttctca tgaaattttc ataaaaaagc ctagaataaa
    10201 aaatttattc taggcttttc ttctattatt atgaagttac cgggcaacta attacttcgt
    10261 ctgtatttgt gacaagcagt agattacgat tataatactg accatcgctt tttagaatca
    10321 tggttttttc tgtgtcgttg taatcgatag ttagcgcttc ttctaaaaac atttctgtcc
    10381 atcgtttaat tagcactgga ccaatgtttg attcaatttc gtcatcttcc gctgttttct
    10441 cttctactaa tcgcaatgtg aaaataccgc tattttcgca agaacagcct tctgtatcat
    10501 aatacaaatg tagccgccct tctaaattcg accgtagtgc agcaagccga tttttagcgc
    10561 tatctgtaaa tgttatatac ataacttatc acctctagct ctattataca cccacatttc
    10621 caactttacc tccgcactgc tcacatacga ttaatttcac aaattataca ttgggttttc
    10681 attcatttgc gtggtatgat agaaatgtat ttacaaaggg ggagaaacac gcagatgacc
    10741 gcttatccac aattcgatgt tattttaaaa gcattaaatt tgtctagcgt aggagtaatt
    10801 attacagatc ctgagcaaaa agataatcca attatttttg ttaacactgg ttttgaaaat
    10861 attaccggct atgctaaaga agaagcactt ggctccaatt gtcacttttt acaaggagat
    10921 gatactgaca aaaaagaagt tgcaaaaatc cgtcatgcca ttaacgaaaa atcaactgcg
    10981 aatgttttac taaaaaatta ccgaaaagat ggtacttctt ttatgaatga acttacgatt
    11041 gaaccgattt acgatgatca taatcatctc tattttgttg gcattcaaaa agatgtgacg
    11101 acagagcacg actatcagct ggaactcgag aaatcattaa cagaaatcga gaaactttcc
    11161 acgccaattg ttccgattaa agaaaacatt tgtgtgttac cactgatagg ctcgctaaca
    11221 catgaccgtt ttcagcatat gtctgaatat gtgagtgaat acatggacca tggcaaggaa
    11281 gattatttga ttatggatct ttctggttta gctgaattta atgaagatgc ggtaatgaat
    11341 cttgtgaagt tccacggatt tatgaaatta actggtgtag agctcatcat caccggaata
    11401 tcgccaaaat tcgccatgac attaattcgc tacgaagaaa acctagccag cttaactaca
    11461 tacagcacaa tcaaagaagc attacaattt tactaaaaga tattgcaaaa tagcccgttt
    11521 tccgttatta tgggtaaata atcaaatata aaccctcatc caaatggtga ggtagaggtt
    11581 gcgagatgca ctagtaattt tttcgaggcg aaacaaagac gccgacgaca aagaatgaac
    11641 aggttgatcg ccgaagtgac tattttctct ttgtttagaa atagttgttg ggacagtttc
    11701 ctaaaggggc tggactgcta taagaatttg tcgaaatttc ttataggtgt gctatctgac
    11761 aaaatgatgt tggtaaaata cgtaacagcc aatttcttgc agattggctg tttttgcgca
    11821 cttcctctga taatagaaag ggagattaat agtgaagaaa gaaacacatg gcgagattcg
    11881 tcgtgactta aaaacaaggc atttgtccat gattgccatt ggtggttcaa tcgggacggg
    11941 attattttta gcaagtggta atgcgattca tacagcagga cctggtggcg ctttagttgc
    12001 ttatatagca atcgggatta tggtgtactt tttaatgaca agtttaggcg aaatggctac
    12061 ttacatgcct gtatctggtt catttagtac ctatgctagt cgatttgttg acccagcttt
    12121 cggttttgcg cttggttgga attattggtt taactgggcc attacacttg cagttgatat
    12181 ttccactgct gcaattatcg ttcaattttg gctaccgaac acccccgctt ggctatggag
    12241 cgcgattttc ttaattttga ttttcggctt aaacgcgctt tcggtaaaag catacggaga
    12301 atcagagtat tggttttcaa ttattaaagt ggccacggtt attattttcc ttatcgtcgg
    12361 cgtgcttact attgtcggaa ttcttggcgg cgaagttatt ggcttttcta actttactgc
    12421 tggcgatgct ccgtttaaag gtggattttt tgccatctta ggtaccttct taattgctgg
    12481 attttctttc caagggactg aaatggttgg tattgcagct ggtgaaagtg ctactccaga
    12541 aaccagcgtg ccaaaagcga ttaaacaagt attctggcgg attttgctat tttatatttt
    12601 tgcgattttc attattggga tgattattcc ttatactaac ccgaatttac ttagtgccga
    12661 ggcaacagat gtggcaatta gcccatttac actcgtattt gaaaaagctg gtcttgcatt
    12721 tgcggcttcc gtgatgaatg cggttatcct gacttctgtt ttatctgctg gtaattcagg
    12781 tctttatgct tccacaagaa tgctttgggc aatggctcgt gataaaaaag cacctaaatt
    12841 cttgggtaaa gtaaaccgtc gtggtattcc gatggcagct ttaattgtta cgacgattgt
    12901 tggtgcaatg acattcatta caacgctaac agaaaacggc acagtgattt atacgtggtt
    12961 actttccgcc tctggtttaa ccggatttat tgcttgggtc ggcatcgcta tcagtcatta
    13021 ccgtttccga aaagcattta tcaaacaagg acatgactta agtgaactaa aatataaagc
    13081 aaaatttttc ccattcggac ctattttagc actaatttta tgtattttag ttattgtcgg
    13141 tcaagattac gcggcatttt tgaaaccaga atttacgaat cctgcttggt ggcaaaaaat
    13201 cggtatttct tatatcggcc tccctatttt ccttgttttc tggctatctt ttaaatttac
    13261 aaataaaaca aaagttattc cactggaaga ctgcaaattt gatcaaaaat aaaaaaacat
    13321 ctcttgttca ttcattttta cttgaatgat acaggagatg tttttattta ctctttttca
    13381 gtaaggtttc gactttttta tttaggcgaa ttaattcttc tatttcgttt tcggtcaggt
    13441 tttcgaatac tttcatcatg gctttataca taaaagcgtt tgcagtggag cgtttcgata
    13501 agtcttctcc ttttttcgaa agcttgagtg ttaaatccat gctgtcattt ggaattgttt
    13561 tgtttaattt cactactaag ccaaggctga ttaacccgtc aacattagct gcagccgaac
    13621 ttccagtaat aattaatcgt ttcgttaaat ccgccactga aataccaggt gtgctgtaaa
    13681 tcacattaat catggcaagt tgctgaatcg ttaatcctaa actcgccgca ttttgatcgg
    13741 catatcccgc tgaaattcgc tggattgacc aataagtttt taatagttca ctaatatttt
    13801 ctgtatctgt attaattcct accatcatcc aacctcctct tgtaacct
//
LOCUS       DASEAA010000061        13842 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.061, whole genome shotgun sequence.
ACCESSION   DASEAA010000061 DASEAA010000000
VERSION     DASEAA010000061.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13842)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13842)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13842
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.061"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            76..1923
                     /locus_tag="U0342_001519"
     CDS             76..1923
                     /locus_tag="U0342_001519"
                     /EC_number="3.5.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464375.1"
                     /note="catalyzes the hydrolysis of a monocarboxylic acid
                     amid to form a monocarboxylate and ammonia; Derived by
                     automated computational analysis using gene prediction
                     method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amidase"
                     /protein_id="HEM2422865.1"
                     /translation="MKRRILLTITAVCTVFSIVGGYVFFTSQQTTTSENKSAVSKKKP
                     PTTKNEKPKQPPNKLTLGKNKENSHLEKNFGGKQLQVEGIDDRAFQSSLKKRTEIKLK
                     PEKAPPKKQDIKPVKPIPSKPEKEEDSSSPIYEKARIMTPINNQLDKLDLAVLEAKEP
                     LIIGADVTKLQQLIATKQLSYKELAGIYLNRIKKYDQNGLTLNAITEINPTIIAEAEQ
                     LDKDNSANKSALYGMPVLLKDNIGTKELPTSAGTVALKDWVIGEDATIVENLKANGAL
                     ILGKTNMSEWAAGMDEELPNGYSGKKGQSKNPYSSDLDPSGSSSGSATGATSDFAAIA
                     IGTETNGSIIIPASAQSAVGYKPSQGLINNKGIIPLSSRFDTPGPLTRTVNDAYLTTN
                     ALINTTSNPPLSTDSLQGKRIGLLADGESNEETAVIKKIKYDLKKAGAIIIEGVAVGE
                     FEQLDTDYALLLNADFKHDLNQFLNVNNAPMTTLESIIQFNQTNPARNMKYGQSELVK
                     SQQSTTTKLQADSLASNLIQEAQNELDSMLQKDKLDAVVTIGMGGSVTFLAPIAGNPE
                     LTIPAGYDEETNQPISLTFITARNSDTTLLNMGYSYEQQSKNRKSPNLK"
     gene            complement(1971..2699)
                     /locus_tag="U0342_001520"
     CDS             complement(1971..2699)
                     /locus_tag="U0342_001520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2422866.1"
                     /translation="MTKLKVTGLKKSFGANEVLKGIDIEVKEGEVVCVIGPSGSGKST
                     FLRCMNNLEEITAGEVVVDDFNITDKKVDINKVRENIGMVFQHFNLFPHLSVLENITL
                     APVELKKMDKEAAKSNALRLLEQVGLREKAEEFPNQLSGGQKQRVAIARALAMDPDIM
                     LFDEPTSALDPEMVGEVLGVMKELAKGGMTMMIVTHEMGFAREVGDRVIFMDGGYIVE
                     EGKPADIFDNPTNERTISFLDKVL"
     gene            complement(2692..4134)
                     /locus_tag="U0342_001521"
     CDS             complement(2692..4134)
                     /locus_tag="U0342_001521"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter substrate-binding
                     protein/permease"
                     /protein_id="HEM2422867.1"
                     /translation="MKKFSRFILMMAIACVAAFIFTGNGLNAKAAEETYLIGTDTTFA
                     PFEFEKDGEHVGIDMDILKAIAKDQNFKYEIKAMGFNAAVQALEANQVDGVIAGMSIT
                     DERKQKFDFSDPYFDSGVVMGILKDNDEIKTYDDLKGKKVAVKTGTEGYAFAEKIKDK
                     YDFDIVVFDDSAQMYDDVKTRNSVACFDDYPVLAYGVQTGNGLKIVTEKEKGNSYGFA
                     VNKGKNQELLEKFNAGLVNIKASGEYDKILENYLGKNAIKENTTEKGFMGIIKSSWPA
                     LLSGLWLTIRLAVVSLIIAFIIGITFGFMKVSNSKILRGIATVYVDIFRGTPLIVQAF
                     FFYFGIPAALDFRMPVFLAGVIALSLNAGAYMVEIVRGGIQSVDKGQMEAARSLGLPH
                     KKAMMKVVLPQAIRMMIPSFINQFVITLKDTSIMSAIGLVELTQSGKIIMARTFESTW
                     TWLIIGIMYLIVITILTKISDRLERRLRND"
     gene            complement(4304..5404)
                     /gene="uvrC"
                     /locus_tag="U0342_001522"
     CDS             complement(4304..5404)
                     /gene="uvrC"
                     /locus_tag="U0342_001522"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit C"
                     /protein_id="HEM2422868.1"
                     /translation="MDDKLQKKLTLLPESPGCYIYRDENNEILYIGKSKCLKNRVKSY
                     FHSKQIGKTARLVRQIRDLELIITTSEKEALLLEMILIQKYQPPFNIQLKEGTSYPYI
                     KITNEKNPHIEVVFEVKRDGAHYFGPYPGRFSARQTVDLIEKLFPLCRCDGKPGRPCL
                     YYHLGLCLGPCQAEIDPVVYKKQIHKISRFLEGDVKNVKDKLLGDMLTATENLEFERA
                     AELRDKIHAINETIEKQHIIFPGLKNRDIIGCYEQDNHLSVFVFFVRNGAINGSKWHV
                     FQIEKSLQEDLAKFLNQFYKDPNNIRPKELLIAEKIDKSLLNEQLRKACLFPQKGGKK
                     KQVDLAIENAKSAYIAYAKMKEYDFEIQLNNH"
     gene            complement(5509..6612)
                     /locus_tag="U0342_001523"
     CDS             complement(5509..6612)
                     /locus_tag="U0342_001523"
                     /EC_number="2.1.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-methyltetrahydropteroyltriglutamate--
                     homocysteine S-methyltransferase"
                     /protein_id="HEM2422869.1"
                     /translation="MNQLAPFYADHVGSILRTKGIKDAREKFQSGEITVSELRKIENT
                     EIKYIVEKQKEVGLKSITDGEFRRAWWHFDFLENLDGVEGYDAAGGIQFSKVQTKSHS
                     VKITGPIDFTTHPFIEDFIFLKEAVGDKHVAKQTIPSPAMLHYRGDIEYQPYLDDAEK
                     FAKDLAVAYQKAIQAFYDAGCRYLQLDDTSWSYLCSDEQREVVRQRGFDPDTLQETYK
                     NLINDAIKYKPADMVITMHICRGNFRSTWIAEGGYGPVAETLFGKLNIDGFFLEYDNE
                     RSGDFAPLKNVTRPDLKIVLGLITSKTGELEDEAAIKARIEEASEIVPLSQLRLSPQC
                     GFASTEEGNILTEEEQWDKLRYVVRLAKDIWGE"
     regulatory      complement(6707..6804)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
     gene            complement(6869..7246)
                     /locus_tag="U0342_001524"
     CDS             complement(6869..7246)
                     /locus_tag="U0342_001524"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RidA family protein"
                     /protein_id="HEM2422870.1"
                     /translation="MAKEIIQTSSAPKALGPYSQAVKVNGLIFTSGQLGINPETGELA
                     DGTTKQAEQAFKNIAAVLAEAGSGLDKIIKATVFFKDLNEFKAVNEVYATFFSSDFPA
                     RSAFQVAKLPLDAAIEIEVIAEA"
     gene            7325..7582
                     /locus_tag="U0342_001525"
     CDS             7325..7582
                     /locus_tag="U0342_001525"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1294 domain-containing protein"
                     /protein_id="HEM2422871.1"
                     /translation="MILTIYLIAITLVSFLLFAVDKRKAIKHAYRIPESVLLFTAFLG
                     GAFGSWMSMQLFHHKTQKPKFRILVPLAMVWTVGMVIWWLY"
     gene            complement(7720..13803)
                     /locus_tag="U0342_001526"
     CDS             complement(7720..13803)
                     /locus_tag="U0342_001526"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial Ig-like domain-containing protein"
                     /protein_id="HEM2422872.1"
                     /translation="MIKATRARHYLVLLMAFFLVLGQLNLTALKVFAKENGNDELTYE
                     VQSKLAEDKKSADLTIKVTPKNDQVKILTIETPDGEKKEGQEVSYKAEKNGTTNFLIN
                     YQDASEEKAETKKYTASYEVNDIVSDDEANKDNTTEKVTEKEADNIQPPSTKDSNKNL
                     KSLKAGQTTVDLKIPDYDQTAWANGDIKEVTATVNFGDNTSTGKKVNFTLPDGMRFVS
                     LPVPSNYQAGSNVDKGVLSHLGASDPLGIAITSVKVPDKEKAYNQATFGTVSYELSPG
                     TEKASFTFSVRVDAAKYYGAVDLATPIKTEIFMGETTSPVASAEQAIHAEGNKVVGYT
                     NQDHVKTMFRTWYSNQRLTEVLASTDTTDSYNYTKSYSVVNGLNNLDNRGSAYYLAKN
                     IEMTLYYPEGMEFVNVVNHGGTPLTDNSNLTITNYPSENKVVVDCKQLNFNSANNSIY
                     GVKYKVPKGTPVGTYSTAKAPHAVITTYDGEVFETDALTNNTNDLTTLAPLDTCKVVD
                     TSNNKMNLFSANGTINPDNETWAGSIQIDNKRTSGVKKNQMYHIEFDPNWEAYMVNIP
                     FDSTISENKITDVQYKTNLNDTFRTYEGALTKNNNQMYRLDANAVELQEGEYFTEVKA
                     NVGDFSPGYQNTEASATYRWNSTVSYGKVKPGITSVQYKGSIWDADDEAETKSSATST
                     YSVLNTESTAANGTAAFYDKAGNVVKTASPGETIKTKATLLLSDYPYGTRTVLNNPEV
                     YLRALEGTKVLPSSIKLTDQDGKDVNFSIQQETANNGDKVYVLKTTDVSVGAFTGYPA
                     KSKFLNISYDTTFDVTLAKSINMDAQEVLAWGGPNVASAIANNNFSDVGLDVNKNGKD
                     NEKLLSVNSSTLSVPKQDTVAVETFLSIAGEGEKAAYTEGDDSTVSYFTPGTDAEYTV
                     QITNASNGEATTFELYIPIPKTGQNFGEKFQSEAFKWDMKLNSALAINDEQKNQFEVS
                     YATQANENNYDSTSIYTETVSDYEKVNMVRIKVKTQINAGEAQTFKVPLKVDETFDSA
                     TEGNKIGERDVYNPFYRVITNTFSGSLSGTKVGAELVIGEVSGTLFNDKDVNGIYEKA
                     KGDEPLANETVELYKWNDATSNYEPAKKAGENVTTKTNSDGKYSFDYNSGVGYGNYAV
                     KFPDKAGYQFTLKNVGKDVTLDSDVPYSGAEKGWNKEIDPTQPNAQYINAGYYAYNPT
                     QDLKVNLNEKQVQMGRSLEITLPKVASTTGQAAEDTIEPSFFKNIKAATNGYKWTVAD
                     TNVATVQTLADGSAAVVGVSTNNKTIDVTDLTITIQDIFGTEQSSTAPVYVTGTEGQV
                     AQQDGYTMGATDFSMEYKEATELTKAQALTLAKTAAFEEVKDGVNSSAEDRLDSVQVS
                     QTQLDAIKNGSNQGSVYPLTYSITKDSKTVSVTIQVTVAKDLTAVNAHDSTIYIGDAW
                     EAKDNFDSATNKEGATDIAFSDVTVTGSVNTAVAGVYPVTYTYNGVSKKINVTVKAIK
                     TAVNAHDSTIYTGDTWNARDNFDSALDKDGNSVAFADVTVTGSVNTNETGTNTITYSY
                     DGVSQTITVTVVENKEGISAHDSTIYAGESWNAKDNFDSAFDKDGNAVDLEDVTVTEK
                     PTVDTTKAGAYEVTYKYGKVSKKITLTVKAKLTAVNAHDSAIYIGDTWSAEDNFDSAL
                     DKDGNSVAFADVEVKGTVDTDKAGTYPVTYTYDGVSKTINIQVKDILTAVNAHDSEIY
                     IGDNWNAKDNFDSAQDKDGNTVNWNEINVSENPAVDLETVGVYQVTYSYGGVSKTINL
                     TVHPRKTSLEVHDSTMYTGDKWKAEDNFDNATDKKGDQIPFKDVTVTGQVDSKTAGTY
                     EISYIYDGLKKVARITVIKNQAQITVKDSVIPYGGKWEAEANFIGATNRDGVAIPFSK
                     IKVDGTVDVNKAGTYKVIYTYDPNEGTADAGKKELSVTANIQVEAEFVKPIKPVDPSK
                     PTDPKKPSTEKTPLKVVDNKQHTATYEAAKPLPKTGDQTNNWVIWTGICLLSMSMLLW
                     VVMRGRKKNYQ"
BASE COUNT         3898 a         2803 c         2340 g         4801 t
ORIGIN      
        1 tcacaaaatt gtcactgatt tacttttttt gatgctatat aattaaatta catatttaaa
       61 catcggagga atcgcatgaa aagacgcatt ttattaacaa tcaccgcagt ttgtacagtt
      121 tttagtatcg tcggtggcta cgtattcttt acgagtcaac aaactactac atcagaaaat
      181 aaaagtgctg tttctaaaaa aaagccacca accacaaaaa atgaaaaacc aaaacaacca
      241 ccaaacaaat taacacttgg caaaaataaa gagaactccc atttagaaaa aaacttcgga
      301 ggtaagcaat tacaagtcga aggtatagac gaccgagctt tccaaagttc gctcaaaaaa
      361 agaaccgaaa ttaaactgaa accagaaaaa gcaccaccaa aaaaacagga cattaaacca
      421 gtaaaaccaa taccaagcaa accggaaaaa gaagaagatt catctagtcc catttatgaa
      481 aaagcgcgta ttatgacgcc gattaataat caattagata agttagattt ggctgttctt
      541 gaagcaaaag aaccacttat cattggtgct gatgttacaa aactccaaca actcattgcg
      601 acaaaacaac ttagctacaa agaattagcc ggtatttatt taaatcgaat caagaaatat
      661 gaccaaaatg gcctaactct aaatgcaata accgaaatca accccactat tattgcggag
      721 gcagaacaac tagataaaga taattcagcc aacaaatctg ctttatacgg tatgccagtc
      781 cttttaaaag ataacatcgg cacaaaagaa ctccccacaa gtgctgggac tgttgcttta
      841 aaagattggg taatcgggga ggacgctaca attgttgaaa atctaaaagc aaatggtgct
      901 ttaattctcg gaaaaaccaa tatgtctgag tgggcagctg gaatggacga agaacttcca
      961 aacggctact caggtaaaaa aggccaaagc aaaaatcctt attcgtcgga cttggatccc
     1021 tctggttcga gttctggatc cgctactgga gcaacaagtg attttgcagc aattgcaatc
     1081 ggtacagaaa caaatggttc gattattata cctgcgtctg ctcaatctgc tgttgggtat
     1141 aagccatctc aaggtttaat aaataacaaa ggtattattc ccttatcaag cagatttgat
     1201 acacccggac cactaacaag aactgttaat gatgcctatt tgacgacaaa tgctctaata
     1261 aatactactt ccaatccacc gctttctacg gattctcttc aaggtaaacg tatcggtctt
     1321 ttagcggatg gcgaaagcaa tgaagaaaca gcagttataa aaaaaataaa atatgatttg
     1381 aaaaaagcag gtgctattat cattgaaggt gttgcagtag gtgaatttga acagttagat
     1441 actgattatg ccttattact aaatgctgac tttaaacatg atttgaatca gtttttgaat
     1501 gtgaacaacg ctcccatgac gacgttagaa tcaattattc aatttaatca gaccaaccca
     1561 gcgagaaata tgaaatacgg ccaatccgaa cttgtcaaat cacaacaaag cacaactacg
     1621 aagctacaag cagacagttt ggcgagtaat ttgattcagg aggcgcaaaa cgaacttgac
     1681 tctatgcttc aaaaagataa actggatgcg gtcgtaacaa ttggcatggg aggttccgtg
     1741 acgtttctag cacccattgc aggaaaccca gaactgacta tcccagctgg ctatgatgaa
     1801 gaaacaaatc aaccgattag cttaactttt attacagcta gaaatagtga tacaacctta
     1861 ttaaatatgg ggtattccta tgaacaacaa tcgaaaaaca gaaaaagtcc taatttaaag
     1921 taaaaaaagc aagatgcttt tggaaattcc aaagtcatct tgctttttgt ttataatact
     1981 ttatctaaga aactaatcgt tctttcgttg gttgggttat caaaaatatc agccggcttg
     2041 ccttcttcaa caatatagcc accatccata aagataactc ggtcgccaac ttcacgagca
     2101 aaacccattt cgtgtgtaac aatcatcatc gtcatgccgc ctttagctaa ttctttcata
     2161 acgcctaaaa cttcccctac catttctgga tcaagcgctg acgttggctc atcgaacaac
     2221 ataatatcag gatccattgc aagtgctctc gcaatcgcca cccgttgttt ttgtccacca
     2281 gacagttgat taggaaattc ttctgctttt tctcgtaagc caacttgttc taataaacgt
     2341 aaagcattac ttttcgcggc ttctttatcc atttttttca attcaacagg tgctaatgtg
     2401 atattttcta aaacagacaa atgcgggaaa agattaaaat gttggaaaac catgccgata
     2461 ttttcgcgaa ctttattgat gtccactttt ttatccgtaa tattaaaatc atcgaccact
     2521 acttcgccag cagtaatttc ttccaagtta ttcatacaac gaagaaatgt acttttacca
     2581 gatccagaag gtccgatgac acaaactact tcgccttctt ttacttctat atcaatgcct
     2641 tttaagactt catttgcgcc aaaactcttt ttcagtccag ttactttaag tttagtcatt
     2701 tcgtaatctc ctttctaaac gatcggatat tttcgttaaa atggtaataa cgataaggta
     2761 cataattccg atgattagcc atgtccaagt actttcgaat gtacgcgcca taatgatttt
     2821 acccgattgt gttagttcga cgagtccaat ggccgacata attgatgtat ctttaagcgt
     2881 gataacaaat tggttaataa aggatggaat catcattcga attgcttgcg gtagaacaac
     2941 tttcatcata gcttttttat gtggtaaacc aagacttctt gctgcttcca tttgtccttt
     3001 gtcgactgat tgaataccac cgcgaacgat ttcgaccatg taggcaccgg cgttcaagct
     3061 tagcgcgata accccggcta agaatacagg catcctgaaa tcaagtgctg ctggaatacc
     3121 aaagtagaag aagaatgctt gtacaattaa tggtgttcca cggaagatat cgacataaac
     3181 agtcgcaatc ccgcgcaaga ttttgctatt gctcactttc ataaatccga atgtaatccc
     3241 aataatgaag gcgattatta gcgaaactac ggctaatcta atcgtcaacc acaaaccgga
     3301 taatagtgct ggccaagaag atttaataat tcccataaag cctttttcag ttgtattttc
     3361 tttaatcgca tttttaccta agtagttttc taaaatttta tcatattcgc cgcttgcttt
     3421 aatattaact aatccagcat tgaatttctc taaaagttct tgatttttgc ctttgttgac
     3481 agcaaaacca taggagtttc ctttttcttt ctcagtaaca atttttaaac cgttacctgt
     3541 ttgaacgccg taagctagta cgggataatc atcaaaacat gctacagaat ttcttgtttt
     3601 aacatcgtca tacatttgag ctgagtcatc aaacacaacg atatcaaagt cgtatttatc
     3661 tttgattttt tctgcgaagg cgtaaccttc tgtacctgtt ttaacagcta ctttttttcc
     3721 ttttaagtcg tcgtaagttt tgatttcgtc gttatctttc aaaatcccca taacgacacc
     3781 agaatcaaag tatggatcgg agaaatcaaa cttttgctta cgttcgtctg taatactcat
     3841 cccagcgata acaccgtcta cttggttagc ttctagtgct tgtaccgctg cattgaatcc
     3901 cattgcttta atttcatatt taaaattttg gtcttttgca attgctttta ggatgtccat
     3961 atcaattccg acatgttctc catctttctc aaattcaaaa ggtgcaaagg ttgtgtctgt
     4021 accaatcaag taagtttctt ccgcagcttt tgcatttaac ccgtttcctg tgaaaataaa
     4081 tgcggcaaca caagcgattg ccatcattag tatgaagcgt gaaaatttct tcatattgtg
     4141 tcctccctct atatgtgttt aactttaatt aaatgtttta tgtagcataa attttttccg
     4201 tactcgtaag attttaccat aagggtaggt tattgaccat agttatttaa gataagattt
     4261 tcaacacaac aaagagaaga agctaatcgt taaaaattag cttctaatga ttgtttagtt
     4321 gtatttcaaa atcatattct ttcatttttg cgtatgcaat ataagcactt ttcgcatttt
     4381 cgatagccag gtctacttgt ttcttcttac cgcctttttg tggaaataaa caagcttttc
     4441 taagctgctc attcagtaag ctcttatcta ttttttcagc gattaacaac tcttttggtc
     4501 gaatattgtt aggatcttta taaaattgat tgagaaattt ggctaaatct tcttgaaggg
     4561 atttttcaat ttggaaaacg tgccatttac ttccattaat tgcgccattt cgaacgaaga
     4621 aaacgaagac acttaaatgg ttatcttgtt catagcaacc aatgatatcc cgatttttta
     4681 ggccaggaaa aataatatgt tgcttttcga ttgtctcatt aatagcgtgt attttatctc
     4741 gaagttctgc cgccctttcg aattcaagat tttcggttgc agttaacatg tcccccagta
     4801 gtttatcctt cacatttttc acgtcgcctt caagaaaacg actaatttta tggatctgtt
     4861 ttttataaac taccggatca atttcggctt ggcatggacc taagcacaat ccaagatggt
     4921 agtacaaaca tggtcgtcct ggcttaccgt cacatcgaca aagtggaaac aatttttcaa
     4981 ttaggtccac cgtttgtctt gcggaaaaac gacctggata aggaccaaaa taatgcgcgc
     5041 cgtctcgctt tacttcaaac acaacttcga tatgcggatt tttttcgttc gtaattttga
     5101 tatatgggta gctcgttcct tcttttagct ggatattaaa aggtggctgg tatttttgaa
     5161 ttaagatcat ttcgagtagt aaagcttctt tttcggaggt tgtaataatt aattctaaat
     5221 ctcgaatttg cctaacaagt cttgcagttt tcccaatttg tttgctatga aaataagact
     5281 ttacacggtt tttcaaacat ttagatttac caatataaag aatttcatta ttttcatctc
     5341 tataaatata acaacctggt gattcaggta ataaggtcaa tttcttttgt aatttatcgt
     5401 ccaaagggct ccccctcctt ctagaacatc tattctatcc ctagtcatcc tttttgtaaa
     5461 gacacaaaaa gaactagcac aaactcttcg gctagttctc ctcatttatt attcgcccca
     5521 gatatctttc gcaagccgga caacatatcg caatttatcc cactgctctt cttccgtcaa
     5581 aatattgcct tcttctgtcg aggcgaaacc gcattgcggg cttaagcgca actggcttag
     5641 aggcacaatt tcactcgctt cttcaatccg tgctttaatg gctgcctcgt cctctaattc
     5701 acctgttttg gatgtaatta agcctagaac gattttcaag tctggacggg tgacattttt
     5761 tagtggcgca aaatctccag aacgttcatt atcatactcc aaaaagaaac catcgatatt
     5821 tagtttgcca aataacgttt ctgcaacggg gccatagccg ccctctgcaa tccaagtgga
     5881 gcggaaattc ccacgacaaa tgtgcatcgt aatgaccata tcagctggtt tatatttgat
     5941 agcatcattg ataagatttt tatatgtttc ttgtaaagta tctgggtcaa aacctctctg
     6001 gcgaacgact tcacgctgtt catcagagca taaataactc cacgacgtat catctaattg
     6061 caagtaccga caaccggcat cataaaatgc ttgaatcgct ttttgatacg caacagctaa
     6121 atctttggca aacttctccg catcatctaa ataaggctga tactctatat ccccacgata
     6181 atgaagcatc gctgggcttg gaatagtttg tttcgcgaca tgcttgtcac ccacagcctc
     6241 tttaagaaaa ataaaatctt ctataaatgg atgtgtcgta aagtcaattg gtccggtaat
     6301 ttttaccgaa tgtgattttg tttggacttt gctgaattga atacctccag ccgcatcgta
     6361 cccttctacc ccgtccaaat tttccaagaa gtcaaaatgc caccacgcac gacgaaattc
     6421 gccatctgtg attgatttta agcccacttc tttctgtttt tcaacgatat atttaatttc
     6481 tgtattttcg attttgcgca actctgagac tgttatttca ccactttgga atttctctcg
     6541 tgcgtcctta attccctttg ttcttaatat acttcccaca tgatctgcat aaaatggtgc
     6601 tagttgattc attttcttcg cctcaattct cattattttt atgtataaaa aaactttccc
     6661 ttaaaagaca gcttttaagg gaaagagtaa tttacctgat tcgcgtgcct tatctgtcag
     6721 tgttacctgc tggatttggc accgtgaaac ttccggttgc caaggcttca cggggccaga
     6781 accctccacc tttcttgata agttgctatg taattggttc ttattatatc gtttatttct
     6841 tgtggttgtc aaatttattt ctgaatattt atgcttctgc gataacttcg atttcaattg
     6901 cagcatcaag cggtaatttt gctacttgga aagcacttct cgcgggaaaa tcactagaaa
     6961 agaatgtcgc atacacttca ttcacggcct taaattcatt taaatctttg aagaaaacag
     7021 ttgctttaat aattttgtcc agtccagaac cagcttctgc taatactgct gctatatttt
     7081 taaaagcttg ctcggcttgt tttgtcgtgc catctgctaa ttcgccggtt tccgggttaa
     7141 taccgagttg acctgatgta aaaataagtc cattcacttt tacagcttgc gagtatggtc
     7201 caagtgcttt tggggctgac gatgtttgaa taatttcttt tgccatttta tccctgcttt
     7261 cttttatggt atgcttttat tctaatcaat aaagtttgtt ttagcaatga agggggattt
     7321 ctaaatgatt ttaacgatat atttaatcgc gataacgctt gtttcttttc tattattcgc
     7381 tgttgataaa cggaaagcaa ttaaacacgc ttaccggata cctgaatctg tactgctttt
     7441 caccgctttt cttggtgggg cgtttggtag ctggatgtcg atgcaactat ttcaccataa
     7501 aacccaaaaa ccaaagttcc ggattttagt gccgcttgcg atggtttgga ctgttggaat
     7561 ggtgatttgg tggttgtact gaattaacaa atcagtagca ttacctcaaa aaaacatcaa
     7621 ttaacttcta tatttctcga taaaaaaata ccgaccagaa aaatctggtc ggtatttagt
     7681 ttaccttctt attgtctttc ctttatctgt tggttcctct tactgatagt ttttctttct
     7741 tcctctcatt accacccata gaagcatgct catacttagc aagcaaatgc ctgtccagat
     7801 tacccaatta tttgtttggt ctcctgtttt tggtaatggt tttgctgctt catatgttgc
     7861 agtatgttgc ttgttatcaa ctactttcaa tggtgttttt tctgttgatg gttttttagg
     7921 atctgttggt tttgatgggt caactggttt tataggtttt acaaattctg cttctacttg
     7981 aatattagct gtaacagaaa gttctttctt acctgcatcc gctgttcctt cattcggatc
     8041 atacgtataa atcactttgt acgtaccagc tttatttaca tctactgtac catctacttt
     8101 aattttggag aaaggaattg ctacaccatc tcggtttgtc gcacctataa aattagcttc
     8161 tgcttcccat tttcctccgt atggaatgac gctatctttt acagtgattt gtgcttgatt
     8221 tttgattaca gtaattcgtg ctactttttt caatccatca tagatatagc ttatttcata
     8281 cgtgcctgct gttttagaat caacttgtcc ggttacagtt acatctttga aaggaatttg
     8341 gtcacctttt ttatctgtag cattatcaaa gttgtcttct gctttccatt tatctcctgt
     8401 atacattgtg gagtcatgga cttctagact tgtttttctt ggatgaacag tcagattaat
     8461 tgtcttcgaa acaccgccat aactataagt cacttggtaa acaccaactg tttctaaatc
     8521 aactgctgga ttttccgaaa cattgatttc attccaattt actgtgtttc cgtctttatc
     8581 ttgggcactg tcaaaattat ctttggcatt ccagttgtcc cctatataaa tttcagaatc
     8641 atgcgcgttc accgctgtta agatgtcttt tacttggata ttaattgttt ttgagacacc
     8701 gtcatatgtg tacgtgactg gatatgttcc agctttgtct gtatcaacgg ttcctttaac
     8761 ttcgacatca gcaaaagcga cagaattgcc atctttatcc agcgcactgt caaagttatc
     8821 ttctgcactc cacgtatctc cgatgtaaat cgcggaatca tgtgcgttga ctgctgttaa
     8881 tttagctttc actgttaaag tgattttttt cgatactttt ccatatttgt aagtgacttc
     8941 gtaagcacct gcttttgttg tatcaacggt tggtttttct gtgactgtaa cgtcttctag
     9001 gtcaaccgca ttcccatctt tatcaaaagc gctgtcgaaa ttatcttttg cattccatga
     9061 ttctcctgca tagattgtag aatcatgtgc actgatacct tctttatttt ctacaacagt
     9121 aactgtaata gtttgagaaa cgccatcgta gctataagtg atagtatttg taccagtttc
     9181 atttgtatta acgcttcctg tcactgttac atcagcaaag gcaacagaat taccatcttt
     9241 atcaagcgca ctatcaaagt tatctctcgc attccatgtg tcacctgtat agattgtgga
     9301 atcatgtgcg ttcactgctg tttttatagc tttgacagta acattaattt ttttagagac
     9361 gccattgtaa gtgtaggtca ctggataaac accggctact gctgtattca cacttcctgt
     9421 aactgtcaca tcgctaaacg ctatatcagt ggcaccttct ttatttgtcg cactatcaaa
     9481 gttgtctttt gcttcccatg catctcctat ataaatagta gaatcatgtg cgttcaccgc
     9541 tgttaaatct ttcgctaccg ttacttgaat agttactgag acagttttgc tatctttagt
     9601 tatcgagtaa gttaatggat acacactacc ttggttggaa ccatttttta ttgcatctag
     9661 ttgtgtttga ctcacttgta ctgaatctaa acgatcttct gcgcttgaat taacaccatc
     9721 ttttacttct tcaaaagcgg ctgttttcgc gagagttagt gcctgagctt tcgttaattc
     9781 agtggcttct ttatactcca tcgaaaagtc agtcgcaccc atagtgtaac cgtcttgttg
     9841 cgcaacctgt ccctcggttc cagtaacata tactggagct gtggagcttt gttctgtacc
     9901 aaaaatatct tgaattgtaa tcgttaaatc cgttacgtca atcgttttat tgtttgtgga
     9961 aacacctacg acagcagctg atccatcagc taacgtttgt actgtcgcta cattggtatc
    10021 tgcaacagtc catttgtagc catttgttgc tgctttaata ttcttaaaga agcttggttc
    10081 aatggtatct tcggcagctt gtccagtggt tgaagctact tttggtaaag tgatttctaa
    10141 gctgcgaccc atttgaactt gtttttcatt taagttaact tttaaatctt gcgtaggatt
    10201 ataagcatag tatcccgcat tgatatattg tgcgtttggt tgtgttggat caatttcttt
    10261 attccaacct ttttctgcac cgctgtatgg tacatcactg tctaatgtga catcttttcc
    10321 tacatttttc aacgtaaatt gataacctgc tttgtctggg aatttcacag cataattacc
    10381 atagcctaca ccagaattgt aatcaaagct gtatttccca tcactattag ttttagtagt
    10441 tacattttct cccgctttct tagcaggttc ataattagag gttgcatcat tccacttata
    10501 aagctccact gtttcattag ctaatggttc atcacctttt gctttttcat aaatcccgtt
    10561 aacatctttg tcattaaata atgttcccga aacttcgcca atgacaagtt cagcccctac
    10621 ttttgttcct gataatgaac cagagaaagt attggttatt actcggtaga aaggattgta
    10681 aacatcacgt tcaccaatct tattcccttc cgtcgcagaa tcaaaagttt cgtctacttt
    10741 aagtggaact ttgaaagttt gtgcttctcc agcattaatt tgcgttttta ctttaattcg
    10801 aaccatattt actttttcat aatctgacac tgtctctgta taaatactag ttgagtcata
    10861 attattttca ttggcttgcg ttgcatagct cacttcaaat tgatttttct gttcgtcatt
    10921 aattgcaagt gcgctattta acttcatgtc ccacttaaat gcttcacttt ggaatttttc
    10981 tccgaagttt tgaccagttt ttgggattgg aatataaagt tcaaaagtgg ttgcttcccc
    11041 attagatgcg ttagtgattt gaactgtgta ttcagcatct gttcctggtg tgaagtaaga
    11101 aactgtacta tcatcgcctt cagtataagc tgctttttct ccttctccag ctatgctcaa
    11161 gaaagtttcc actgcaacgg tgtcttgttt tggaacactt aaagtactac tgttaacaga
    11221 aagtaatttt tcattgtctt tgccattttt attaacatct agacctacat ctgaaaagtt
    11281 attattggca attgcggaag caacattggg gccgccccat gcaaggactt cttgtgcatc
    11341 catattgata ctcttagcta atgttacatc aaatgttgtg tcgtaactga tatttagaaa
    11401 tttactctta gccgggtatc ccgtaaatgc ccctacggaa acatccgttg tctttaatac
    11461 ataaacctta tctccattat ttgccgtttc ctgctgaatg gagaaattaa catctttccc
    11521 atcttggtct gtcagtttaa tagaagaagg cagaactttt gtaccttcta aagcacgtaa
    11581 atatacttct ggattattga gtacagttct agtcccataa ggatagtctg ataaaagtaa
    11641 tgttgctttt gttttaatgg tttctcctgg actagctgtt tttactacat taccagcttt
    11701 atcgtagaaa gcagccgtac catttgctgc ggtactttct gtatttaaaa cactataagt
    11761 tgatgtcgca gaagattttg tttcggcctc atcatcagca tcccaaatgg aacctttata
    11821 ttgaactgat gtaattcctg gcttaacttt tccgtacgaa acagttgagt tccaacgata
    11881 ggtagccgag gcttctgtat tctgatatcc aggtgaaaag tctcccacat tcgctttcac
    11941 ttctgtgaaa tactcacctt cttgaagctc cactgcgttt gcatctaagc gatacatttg
    12001 gttattattt ttagtgagcg ctccttcata cgttcggaat gtgtcgttta aatttgtttt
    12061 atattgaaca tcagttattt tattttctga aatggtgcta tcaaaaggga tattgaccat
    12121 gtaggcttcc cagttaggat caaattcaat gtgatacatt tgatttttct tcacaccaga
    12181 tgttctttta ttatcgattt ggatactacc agcccaagtt tcgttatccg ggttgattgt
    12241 tccatttgct gaaaataaat tcattttatt attggaagta tcaactactt tacaagtatc
    12301 tagaggagct aaagtagtta aatcattagt attgttagtt aatgcatcgg tttcgaatac
    12361 ttctccatca tacgttgtga taaccgcatg tggcgctttt gcagtgctat aagttccaac
    12421 aggcgttcct ttaggcactt tatatttgac tccgtaaata gaattattcg ctgagttgaa
    12481 atttaattgc ttacaatcaa ctacaacctt attttcactt ggataattag taatagttag
    12541 gttggaatta tccgttaaag gcgtaccacc atgattcaca acgtttacaa actccatacc
    12601 ttctggataa taaagcgtca tctctatgtt ttttgctaga taatacgctg atccacggtt
    12661 gtctaaatta tttaatccat tcacaacaga gtaagatttt gtatagttat aagaatctgt
    12721 tgtatctgtg cttgcaagta cttctgttag cctttgatta ctataccaag ttcggaacat
    12781 agttttcaca tgatcctgat tcgtataacc tacaacctta tttccttccg catgaatcgc
    12841 ttgttccgcg gaagcaactg gtgaagttgt ctcacccata aaaatttctg tttttattgg
    12901 agtggctaag tcaactgctc cgtaatattt tgctgcatct actcgtacag aaaaagtaaa
    12961 gctcgctttt tcagttcctg gacttagctc ataactaact gttccaaaag tggcttgatt
    13021 atatgctttt tctttatcag gtacttttac cgaagtaatg gctattccta gtggatcact
    13081 tgcccctaaa tgacttaaaa cccctttgtc tacattcgaa ccagcctgat agttgctcgg
    13141 cactggcaaa gaaacaaaac gcattccatc tggtaaagtg aaatttactt ttttgccagt
    13201 agaagtattg tcgccaaagt ttactgttgc agttacttct ttaatatcac cgtttgccca
    13261 tgctgtttgg tcataatcag gtatttttaa atcaaccgtt gtttgtcctg ctttaagtga
    13321 ttttagattt ttgttactat ctttagtaga aggaggttga atattatcag cttctttttc
    13381 agttaccttc tctgttgtat tatctttatt tgcttcatca tctgaaacta tatcatttac
    13441 ttcataagaa gcagtatatt ttttagtttc tgctttttct tcgcttgcat cttgataatt
    13501 aattaagaaa ttagttgtgc catttttttc ggctttatag cttacttctt ggccttcttt
    13561 cttctctcca tcaggtgttt caatggtaag gattttcacc tgatcgtttt ttggtgttac
    13621 tttaatggtt aaatcagctg attttttatc ttcagccaat ttggactgaa cttcataagt
    13681 tagctcatca ttcccatttt cttttgcaaa aaccttaagc gctgttaaat ttaattgtcc
    13741 tagtactagg aaaaatgcca ttaacagtac gaggtaatgc cgtgctctag ttgctttaat
    13801 cataaagagt tctctcctca aagtatattt tatagttgcg aa
//
LOCUS       DASEAA010000062        13751 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.062, whole genome shotgun sequence.
ACCESSION   DASEAA010000062 DASEAA010000000
VERSION     DASEAA010000062.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13751)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13751)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13751
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.062"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(341..1102)
                     /locus_tag="U0342_001527"
     CDS             complement(341..1102)
                     /locus_tag="U0342_001527"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2422873.1"
                     /translation="MKVQRIQAIENLIHEKGSISLDDLCEQFNVSKNTVRRDIAKLLQ
                     KNTIQKVYGGVVSVYNNPEEIRPFENRDTENHTEKQLIGKAAADFIEENDLIFIDSGT
                     TTSCLAAALPTDKDITIITNSLDVINFASEMDNVKLIVIGSTFKTSTKSFVGVENWGF
                     FEKYNITKAFMAATALSTTHGVMNSDILEYEIKRHMMEKAREKFLLVDHTKVDKSALL
                     TYGELAEFDWLVTSKDMAGGCLGYCEDVGVLVRLV"
     gene            1297..2763
                     /locus_tag="U0342_001528"
     CDS             1297..2763
                     /locus_tag="U0342_001528"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CoA-acylating methylmalonate-semialdehyde
                     dehydrogenase"
                     /protein_id="HEM2422874.1"
                     /translation="MADVRKLKNYIDGEWVESKTDKYEDVINPATGEVLCQVPISTRA
                     ELDQAAVIAEQAFEKWSQVAVPRRARVLFSFQQLLIQHKEELARLITLENGKNLSEAR
                     GEVQRGIENVEFAAGSPTLMMGDSLASIATDVEAANYRYPVGVVGGIAPFNFPMMVPC
                     WMFPMAIALGNSFILKPSERTPLLMEKLVELFSEAGLPKGVFNVVYGAHDVVNGILEN
                     EIIKAVSFVGSKPVGEYVYKTGSANLKRVQALTGAKNHTIVLNDADLEDTVTNVISAA
                     FGSAGERCMACAVVTVEEGIADEFLAALRTAAQNVKIGNGLDDGVFLGPVIREENQKR
                     TIAYIEKGLEEGAKLTVDGRETGLSEGHFVGPTILEDVTTDMTIWKDEIFAPVLSVIR
                     VKNLQEAVRVANQSEFANGACIFTNNAKAIRYFREKIDAGMLGVNLGVPAPMAFFPFS
                     GWKSSFYGTLHANGKDSVDFYTHKKVVTARYSLKGYEE"
     gene            2776..3597
                     /gene="iolB"
                     /locus_tag="U0342_001529"
     CDS             2776..3597
                     /gene="iolB"
                     /locus_tag="U0342_001529"
                     /EC_number="5.3.1.30"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-deoxy-glucuronate isomerase"
                     /protein_id="HEM2422875.1"
                     /translation="MGKLLRKPLNERIAPGITFVQDINQANSPLSYVGFRLIEMEKGA
                     IYQEELTDLECCIVALTGKITVSEGDNIFAEIGTRANVFEKIPTDSVFISGGRTFQVK
                     ADTEKARVALCYSQANRDLPTTLIKASDNSIEQRGKYQNKRLVHNILPDVSEVASSLL
                     VVEVYTDGGNFSSYPPHKHDRDNLPAESLLEESYYHEINPEQGFIFQRVYTDDRTLDE
                     TMAVEHQNAVIVPEGYHPVGVPDGYDSYYLNVMAGPKRVWKFHNDPDHEWILERD"
     gene            3614..4591
                     /gene="iolC"
                     /locus_tag="U0342_001530"
     CDS             3614..4591
                     /gene="iolC"
                     /locus_tag="U0342_001530"
                     /EC_number="2.7.1.92"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-dehydro-2-deoxygluconokinase"
                     /protein_id="HEM2422876.1"
                     /translation="MNLNKHSERKFDLITVGRACIDLNAVEYNRPMEETMTFSKYVGG
                     SPANIAIGTAKLGLKVGFIGKISADQHGRFIEKYMRDLNINTDGMVKDTEGRKVGLAF
                     TEIKSPDECSILMYRENVADLYLTPEEISEDYIKEARVLLISGTALAQSPSREAVLKA
                     VSLARKNDVAVAFELDYRPYTWTNTEETAVYYSLVAEQADVIIGTRDEFDMMENQVGG
                     KNEATKAHLFQHQAEIVVIKHGVEGSFAYTKAGETFQAKAYKTKVLKTFGAGDSYASA
                     FLYGLFSGESIETALKYGSAAASIVVSKHSSSDAMPTADEIKALIAQAE"
     gene            4604..6520
                     /gene="iolD"
                     /locus_tag="U0342_001531"
     CDS             4604..6520
                     /gene="iolD"
                     /locus_tag="U0342_001531"
                     /EC_number="3.7.1.22"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3D-(3,5/4)-trihydroxycyclohexane-1,2-dione
                     acylhydrolase (decyclizing)"
                     /protein_id="HEM2422877.1"
                     /translation="MTEKTIRLTTAQALVKFLNQQYIEVDGEMAPFVDGIFTLFGHGN
                     VVGIGQALEEAPGHLKVYQGKNEQGMAHAAIAYAKQKNRQRIYACSTSAGPGSANLIT
                     AAGTALANNLPVLFLPADTFATRQPDPVLQQLEHESSTAITTNDGFQAVSRYFDRVQR
                     PEQLMSALIRAFEVMTNPASAGPATICIAQDTEGEAFDYPVEFFQKRIHYLNRQIPTK
                     RELTEAARLIKASKTPVIIVGGGARYSRAREELIALSEQTNIPLVETHAGKSTLEFDF
                     KNNLGGTGILGTLAANKAIRDADLVIGIGTRYTDFTTSSKTAFDPTTKFININVSRMQ
                     TYKLDAFQVVGDARATLAELAPLLQDYQTQFGNKIAAYKTEWLDERARLQNTKFNREA
                     FTPEIKVQFDQATLNEYADRLQTEFTQTEALITINDNVAPDSIVVCSAGSLPGDLQRL
                     WNPAVPDTYHLEYGYSCMGYEINGALGAKMAAAKKQEVYAIVGDGSFCMSHSELLTSL
                     QYGKKINIMLFDNSGFGCINNLQMANGSDSFFCEFRDSDNQIMQVDYAKIAEGYGAKV
                     YRANTKEDLISALEDAKTQSKTTLIEMKVLPKTMSEGYLNWWNVGVSEVSNKESIKQA
                     YEEKQANLKNARLY"
     gene            6652..7023
                     /locus_tag="U0342_001532"
     CDS             6652..7023
                     /locus_tag="U0342_001532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron chaperone"
                     /protein_id="HEM2422878.1"
                     /translation="MEVFAEYLAEIENPDHRARTQEVLTWVAETFPDLKPEIKWNTPM
                     FTNNGTFIIGFSIAKQHMSVSPEVAGIERFEADIKEAGYSHTKGIFRITWAKPVDYDL
                     LAKIIEFNIQDKANYTSFWRV"
     gene            7117..7485
                     /locus_tag="U0342_001533"
     CDS             7117..7485
                     /locus_tag="U0342_001533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422879.1"
                     /translation="MRIFCGIMSIQAGFIGALAEILSPDSKKNNLFMIPEDLAASSGY
                     LMSLAMVLAGILIICAYRNDFLIFMALILWLFGLIFGLIFTPSYSGFYFRPIVCLISF
                     LMGLFIFTDYTRHQDTGEER"
     gene            complement(7509..8624)
                     /locus_tag="U0342_001534"
     CDS             complement(7509..8624)
                     /locus_tag="U0342_001534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low temperature requirement protein A"
                     /protein_id="HEM2422880.1"
                     /translation="MAERKVSWLELFFDLIFVTAVASTTHLLLSVDNHPDKTAVYFGE
                     YLLMVTPMFWAWVGQTMFFNRFGEKIKLPELYMLPQMFFLILMTASFDLTFSNTYYTF
                     LIGYLGIRLITVIQYFVISKQLTGNARKVAILLGSVFLLGVLTTATSVFFEGFARYLV
                     MYLGIAVDIILPLFLAKTLRKVPVDFPHLAERFGLFVIITFGESIVAITTILVGHTLD
                     PYTIGYTLLGFLIICTLWASYFHSFEKIVNHHKETHGQYLIYGHFFIIISVMLLAANV
                     HLLFEGHLERNVLLLMLFGSVAVFFVSKQFVFAAHKKAEVTFSFWKDALLLLLLVGLF
                     FVNLYSDFPLFVSFVSIWVCALVDLGLQFGTSRSARM"
     gene            8755..9420
                     /locus_tag="U0342_001535"
     CDS             8755..9420
                     /locus_tag="U0342_001535"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM2422881.1"
                     /translation="MVKTWEEFLKQEAKQPYFIELMEAVKDARAKGNVYPTEEDMFSC
                     FRLCPYDQVKVVILGQDPYHGPGQAHGLSFSVQKGVRIPPSLRNIYKELKTDLDIEPA
                     DHGYLAKWAEQGVLLMNTSWSVEEGKAGSHKKLGWATFTDHVLEELNNYDKPLVFILW
                     GNHAIKAASGITNPQHLLIKGVHPSPLAASRGFFESKPFSKTNAFLEEHGRKPIDWDL
                     NEQ"
     gene            9588..9887
                     /locus_tag="U0342_001536"
     CDS             9588..9887
                     /locus_tag="U0342_001536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463921.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422882.1"
                     /translation="MKHNFTEDDFVYGESWGLVHRGVLEDKEVERMKALRDKVVGKKG
                     VAQTTLKPIGSVRIDGEVYEARLKTGYLEVGKPIIAVGIDFGYVLVNEDIQEGEK"
     gene            9884..10828
                     /gene="floA"
                     /locus_tag="U0342_001537"
     CDS             9884..10828
                     /gene="floA"
                     /locus_tag="U0342_001537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463922.1"
                     /note="flotillin-like protein involved in membrane lipid
                     rafts; Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flotillin-like protein FloA"
                     /protein_id="HEM2422883.1"
                     /translation="MTMIGPIIIAVLIIIFLIVFFTLVPVGLWISALSARVPVGLGTL
                     IGMRLRRVVPSRVVKPLIKAVKAGLDLEVNQLESHYLAGGDVDNTVDALIAAHRANIE
                     LDFSRAAAIDLAGRDVLEAVQTSVTPKVIRTPEFTGVAQNGVEVKVITQITVQSNIER
                     IVGGAGEDTVIARVGEAVVSTVGETREHTDVLENPNSISKKVQEQGLGDGTAYTILSI
                     DIAEMRIGDNIKAKLDIEKANADMEVAQAAASKRKAEAIALEQENRAAVVAAEAEVPR
                     ALSRALEEGNLGVMDYYKMENVQSDTAMRESIAHEDEK"
     gene            10863..11312
                     /locus_tag="U0342_001538"
     CDS             10863..11312
                     /locus_tag="U0342_001538"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463923.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422884.1"
                     /translation="MDLSDFLNSGWESVLVVLGIVGVIINFLSKAGKGTEEENKKAPQ
                     PRPNLRSMHQASRTQTTKKPEKRKVSQGTFTQNKEQDKVIAEQKAAQQKMLREIRRES
                     DVAKGKNIIKSTSSHHKKARKLRGRLQEAIITKEILDKPVSLRKNHL"
     gene            11456..12139
                     /locus_tag="U0342_001539"
     CDS             11456..12139
                     /locus_tag="U0342_001539"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463924.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C40 family peptidase"
                     /protein_id="HEM2422885.1"
                     /translation="MKIIATRRKIFFAFIALMISFSVLFLPTTNASAATTYKMTTTAD
                     VNVRAADNTKGKVIGFYKKGTTVTFTAKTKNNWYKTTYKGKVGYVSGKCVTTYKAPVA
                     TTQSFTALNNEARKHIGKRYKIGATGPSCFDCSGYTQYVYSKGVKKSIPRTAKQQYAS
                     AKKIKAQELKKGDLIFFNYGKGVAHVGIYVGNGKMLNAQNNGVKYDTITSGYWKKYIA
                     GYGRVANLK"
     gene            12195..12620
                     /locus_tag="U0342_001540"
     CDS             12195..12620
                     /locus_tag="U0342_001540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463925.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422886.1"
                     /translation="MQYKIKEMPLEELEPKVVEGLLEHKERLGYDIPKKDTEYIGFAA
                     LSEVGEIVGGVTAKISYGELYVSLLSVDPSTQGSGVGTELMAQIERYGRANNCHHISL
                     TTFSYQAPGFYKKCGFTELGRVKDFPIIGEEKYFFIKYL"
     gene            complement(12623..13423)
                     /gene="proC"
                     /locus_tag="U0342_001541"
     CDS             complement(12623..13423)
                     /gene="proC"
                     /locus_tag="U0342_001541"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463926.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM2422887.1"
                     /translation="MKKIGFIGAGNMGTAMIRGLAQANLDNSEAIIVGGRNLEKLKPL
                     EAAFTGLQITTDTEKLVEQADIIILAVKPYTIPEILTSVKEQLTPDKIIISVAAGVTI
                     QDLEELTSAKTKIVRVMPNTPALVGEAMSSISPNINVSSEEINEVTAIFTSFGEAEVV
                     SENLMDAVIGVSGSSPAYVYMFIEALADGAVLSGMPRDKAYKFAAQAVLGAAKTVLET
                     GEHPGKLKDMVTSPGGTTIEAVKSLENDGFRSAVINAVQAAANKNSSM"
BASE COUNT         4532 a         2625 c         2888 g         3706 t
ORIGIN      
        1 gatttgttgg aagctatcat ttacttcctg ctataaagtt tcctatgaga ccgatgcaaa
       61 atggcgtgga gatttcaaag ttagaaatac agggccgaaa tcaggctatt atgctcaaga
      121 catttcgtta aatagatatg cggaaaatga agactttatt gaatgttctt ttgatgcatc
      181 aattatgaca atgaatatta tttgtaagga aatcattgta gaggaagtaa gtgtcataga
      241 aaattcgttt ttttggaaaa attattaaaa taaagttcag agtttgtgaa tataaaaaga
      301 agtcccattt catcaaatgg ggcttctttc atcacacaaa ctaaaccaac ctcaccaaaa
      361 ccccaacatc ctcacaatac cccaaacacc caccagccat gtccttcgac gtaaccaacc
      421 aatcaaattc cgccagctcc ccgtaagtaa gcaaagccga cttatccacc ttcgtatgat
      481 ccactagcaa aaatttctcc ctagcttttt ccatcatatg gcgcttaatc tcatactcca
      541 aaatatccga attcatcacc ccgtgcgtag tagacagcgc agttgcggcc ataaaagctt
      601 tcgtaatatt atatttctca aaaaatcccc aattctccac gccaacaaat gatttagtac
      661 tcgttttaaa agtcgagcca ataacaatca atttcacatt atccatttca ctcgcaaaat
      721 taatcacatc taggctgttc gtaataatag taatatcctt atccgttggc agagccgcag
      781 cgagacagct agtcgttgtg ccggaatcaa taaaaatcaa atcattttct tcaataaaat
      841 cagccgccgc ttttccgata agctgttttt ctgtgtgatt ttctgtatca cgattttcga
      901 acggccgaat ttcttcggga ttattataaa cagaaacgac gccaccatag actttttgga
      961 tggtgttttt ttggagaagt ttggcaatgt ctcggcgaac ggtatttttg gaaacattga
     1021 attgttcgca taaatcgtcg aggctaatac tgcctttttc gtgaattaaa ttctcaatcg
     1081 cttgaatgcg ttgtactttc attttaaatt catcctttgg caaaattatt ttaattacac
     1141 tatttataac acatgctcaa aaggtaatca actatgattt tttatggtga agttagtgac
     1201 aaaaattaaa ttgactctct aattttattg gcttaagatg gggttataat cgattaatgg
     1261 ttaacttatg agtaatttta agtggaggga ttttttatgg cagatgtacg gaaattaaag
     1321 aattatattg acggcgaatg ggtcgagagt aagacagata aatatgaaga tgtcatcaat
     1381 ccggcgacgg gggaagtgct gtgccaagtg ccgatatcga cacgcgcaga attagatcag
     1441 gcggctgtca ttgctgaaca agcttttgaa aaatggagcc aagttgctgt accaagacgt
     1501 gcacgggttc tatttagttt ccaacagtta ctcattcaac ataaagaaga actagcaaga
     1561 ctgattacac tcgaaaatgg taaaaattta tccgaagcac gcggtgaagt ccaacgtggt
     1621 attgaaaatg tcgagttcgc ggctggatcg ccaacactaa tgatgggtga ttcgctggct
     1681 tcgattgcaa ccgatgtgga ggcggcaaat tatcgctatc cggtcggggt tgttggtgga
     1741 atcgcaccat ttaacttccc gatgatggta ccatgttgga tgttcccaat ggccattgcg
     1801 cttggtaact cgtttatttt aaaaccatcc gagagaacgc cacttttaat ggagaaattg
     1861 gtggaattat tttctgaagc gggtcttcca aaaggtgtat tcaatgtagt gtacggtgcg
     1921 catgatgtgg ttaacggaat tttagagaac gaaataatta aagcggtttc ttttgttggt
     1981 tctaagccag ttggtgaata tgtctacaaa acagggagcg caaatttaaa acgagtgcaa
     2041 gccttaacag gtgcgaaaaa ccatacaatt gtgcttaatg atgcggattt agaagatacc
     2101 gtgacgaatg ttatttcagc ggcattcgga tcggcgggtg aacgttgtat ggcatgtgcg
     2161 gtcgtcacag ttgaagaagg catcgcggat gagtttctag cggcacttcg gacagccgcg
     2221 caaaatgtga aaattggaaa tgggttagac gatggcgttt tcctcggtcc tgtaattcgc
     2281 gaagaaaacc aaaaacgcac gattgcttat attgaaaaag gcttggaaga aggcgcgaaa
     2341 ttaacagtag atggtcggga aactggactt tcagaagggc actttgttgg tccaacaatt
     2401 ttggaagatg ttacgacgga tatgacgatt tggaaagacg agattttcgc accagtttta
     2461 tccgtgattc gtgtgaaaaa tctccaagaa gctgttcggg ttgcgaatca atctgaattt
     2521 gcaaatggcg cttgtatttt cactaataat gccaaagcaa ttcgctactt tagagaaaaa
     2581 atcgacgctg gaatgcttgg tgtgaatttg ggcgtacctg ctccaatggc gtttttcccg
     2641 ttttctggtt ggaaatcgtc cttttatgga acgcttcatg ctaacggcaa agacagcgtg
     2701 gatttttaca cgcataagaa agttgtcact gcgagatatt cattaaaagg ttacgaagaa
     2761 taggagggcg caaaaatggg caaactgtta cgaaaaccgt taaatgaaag aatagcgcct
     2821 ggcattacgt ttgtgcagga tattaaccaa gctaattctc cgctaagtta tgttggtttt
     2881 cgcttaattg aaatggaaaa aggtgctatt tatcaggagg agcttactga tttagagtgt
     2941 tgtattgttg cgcttactgg gaaaattaca gtgagtgagg gtgacaatat ttttgcggag
     3001 attgggacaa gagcgaatgt ctttgaaaaa attccgacag atagcgtgtt tatttctggc
     3061 ggacggacgt ttcaagtgaa ggcggacaca gaaaaagctc gtgtagcgct ttgctactcc
     3121 caggcgaatc gagacttgcc aacgacactt attaaagcta gtgataattc gattgagcag
     3181 cgcggaaaat atcaaaataa acgactggta cataacattt tgccagatgt aagtgaggtt
     3241 gcgagcagtt tgttggttgt ggaagtgtat acggatggcg gaaatttttc gagttatccg
     3301 ccgcataaac atgaccgcga taatctgcca gcggagtcgc ttttggaaga aagttattat
     3361 catgaaatta atccggagca aggttttatt tttcaacgtg tctatacgga tgaccggacg
     3421 cttgatgaaa cgatggctgt ggagcatcaa aatgcggtta tcgttccaga aggctatcac
     3481 ccagttggcg tgccagatgg atatgattca tattatttga acgtaatggc tggaccgaaa
     3541 cgggtttgga aatttcacaa cgatccggac catgaatgga ttttagaacg agactaagag
     3601 gaggatttgg agcatgaatc taaacaaaca tagcgaacga aaatttgatt taatcacagt
     3661 aggacgcgct tgtattgatt tgaacgcagt cgaatacaat cgtccaatgg aagaaacgat
     3721 gactttttct aaatatgtgg gtggttcccc ggcaaatatt gcgataggaa ccgcaaaact
     3781 aggcttaaaa gtaggcttta tcggcaaaat ttctgctgat caacatggtc gttttattga
     3841 gaaatatatg cgtgatttga atattaatac ggacggaatg gtgaaagata cggaaggccg
     3901 caaagttggc ttggcgttta cggaaattaa aagcccagat gaatgcagta ttttgatgta
     3961 tcgcgaaaat gtagcggatt tgtatttaac gccagaagaa atttcggaag attatataaa
     4021 agaggctcgc gtgctgctca tttctggaac agctttagcg caaagtccat cgcgggaagc
     4081 tgttttaaag gcagttagtt tagctcggaa aaatgatgta gccgttgctt ttgaattaga
     4141 ttatcgccct tatacgtgga caaacaccga agaaacggcg gtttattatt cacttgtcgc
     4201 ggaacaagcg gatgtgatta ttggcacgcg cgacgaattt gatatgatgg aaaatcaagt
     4261 cggtggcaaa aatgaagcaa caaaagcgca tcttttccaa catcaagcag aaattgttgt
     4321 cattaagcat ggggtggaag gctcattcgc atatacaaaa gcgggagaaa cattccaagc
     4381 aaaagcatat aaaacaaaag tgctcaaaac attcggcgcg ggagattcct acgcatcagc
     4441 cttcttatac ggtttattta gcggtgaaag tatcgaaaca gcccttaaat acggaagtgc
     4501 cgcggcttcg attgttgtta gcaagcatag ttcctcagac gcgatgccaa cagctgatga
     4561 aatcaaagcg ctcattgcgc aagcggaata ggaggagatt atggtgactg aaaaaacgat
     4621 tcgactaaca accgcacaag ctttggtaaa atttttaaat cagcaatata tcgaagtgga
     4681 cggcgaaatg gcaccgtttg tggatggtat tttcacgctg tttggacatg gaaatgtggt
     4741 tggtatcggg caagccttgg aagaagcccc aggtcattta aaagtgtatc aaggaaaaaa
     4801 tgagcagggc atggcgcacg cggcaatcgc ttatgcaaaa caaaaaaatc gccagcgcat
     4861 ctacgcgtgt tccacatcag caggaccagg ttccgcgaac ttaataacag cagccggcac
     4921 cgcacttgca aacaatttac ctgtgttatt cctgccggcc gacacattcg caaccagaca
     4981 gcccgaccca gttttgcaac aattagagca tgagtcgagc acggcaataa caaccaatga
     5041 tggcttccaa gcagtctcca gatattttga ccgtgtgcag cgaccagaac aactcatgag
     5101 cgccctgatt cgcgctttcg aagtaatgac caacccagcg agcgcgggac cagcaacaat
     5161 ctgcattgcg caagacacag aaggagaagc attcgattat ccagtcgaat ttttccaaaa
     5221 acgaattcac tatcttaatc ggcaaatccc gacaaagcgt gaactaaccg aagcagctcg
     5281 gctcatcaaa gcgagcaaaa ccccagttat catcgtcgga ggtggcgccc gctattcaag
     5341 agcacgcgaa gaattgatcg ccctttccga gcaaaccaac attccgctcg tcgaaacaca
     5401 tgccgggaaa tcaacgcttg agtttgactt caaaaacaac ctaggtggca cgggaatcct
     5461 cgggacgctt gctgccaata aagctatccg tgacgccgat ttagtcatcg gaattggcac
     5521 gcgctatacc gatttcacaa ccagttccaa aacggcattc gatccaacaa ccaaatttat
     5581 caatatcaat gtcagccgca tgcaaacata caaattagat gccttccaag tggtcggtga
     5641 cgctagagca accctagctg aactcgcacc acttttacaa gattatcaga ctcaatttgg
     5701 aaacaagata gccgcataca aaaccgagtg gctagacgaa agagcacggc tacaaaacac
     5761 caaattcaac cgagaagcat ttacgccaga aatcaaagtt caattcgacc aagcgacctt
     5821 aaacgaatat gcagaccgct tgcagaccga atttacgcaa acagaagcac ttatcacaat
     5881 taatgacaac gtggcaccgg atagcattgt cgtttgttcg gccggttcac ttcccggaga
     5941 tttgcaacga ctctggaacc cagccgtacc agacacctat cacttagaat atggctattc
     6001 ctgcatgggc tacgaaataa acggtgctct cggcgcgaaa atggccgcag caaaaaaaca
     6061 agaagtatac gccatcgttg gcgacggcag cttctgcatg tcacactcag aactactaac
     6121 atccttacaa tacggcaaaa aaattaacat tatgctcttc gataattccg gttttggctg
     6181 cattaacaac ctccaaatgg caaacggcag cgacagtttt ttctgcgaat tccgcgatag
     6241 cgacaaccaa atcatgcaag tcgattacgc caaaattgca gaaggatacg gagcaaaagt
     6301 ctatagagcc aacacgaaag aagatttaat cagcgcactg gaagacgcaa aaacacaaag
     6361 caaaactact ttgatcgaaa tgaaagtact accaaaaact atgtcagaag gctatcttaa
     6421 ttggtggaat gtgggagttt ccgaagtttc aaacaaagaa agtatcaagc aagcatacga
     6481 agaaaaacaa gcaaacctga aaaatgcccg actatattaa gcaaaacaaa aacaagtcca
     6541 tcaccggact tgtttttgtt ttgccacttc aatagccccg ccttgcatca caccagtttt
     6601 tctttataat aaaaagtaac tgtaagatta tgttttttag gaggaaataa tatggaagtt
     6661 tttgcagaat atttagctga aattgaaaat ccggatcacc gcgcgagaac acaagaagtt
     6721 ttaacatggg tggcggaaac ttttccagac ttaaagccag aaatcaaatg gaatacaccg
     6781 atgtttacaa ataatggcac gttcataatc ggcttctcta ttgcaaaaca gcatatgagc
     6841 gtttccccag aagtggctgg aatcgaacgt ttcgaagcag acattaaaga agcgggctat
     6901 agtcatacga aaggtatttt ccgaattacg tgggctaaac cagttgacta tgacctacta
     6961 gcaaaaatta tcgagtttaa tattcaagat aaagcaaatt atactagttt ttggcgcgtt
     7021 taagtgattt ttagttactt tgtcgcgtag taaatccaga ttttttatgc cataattaat
     7081 aagctaaaat gtatttttat aaaagagtgg tgtgaaatgc gtattttttg tgggattatg
     7141 tcaatccaag caggctttat tggtgctctt gctgaaatac taagtccgga cagtaaaaaa
     7201 aataacttat tcatgatacc ggaagatctt gcggcatcat caggctattt aatgtctctt
     7261 gcgatggttt tagcgggaat tctaataatt tgtgcttatc gaaatgattt tctaatattc
     7321 atggcactaa ttttatggct ctttggactt atttttgggc tcattttcac cccgagttat
     7381 tcgggttttt atttccgccc aatcgtatgt ttaataagct ttttaatggg cctatttatt
     7441 tttacagatt acacaaggca ccaagacaca ggcgaggaaa ggtgagcgaa atgctcatct
     7501 ttttttattt acattcgtgc cgaccgcgaa gtcccaaact gcaaaccaag atccaccagc
     7561 gcacaaaccc aaatactcac aaaactaaca aatagaggaa aatcactata caaattaaca
     7621 aaaaacagcc ccactagaag taacaataac aacgcatctt tccaaaaaga aaatgtcact
     7681 tcggcctttt tatgagcagc aaaaacaaat tgtttcgaaa cgaaaaacac agctacagaa
     7741 ccaaacaaca tcaataacaa aacattgcgt tccaaatgcc cctcgaacaa caaatgcaca
     7801 ttcgccgcaa gtaacatcac tgaaataata ataaagaaat gtccataaat taagtactgg
     7861 ccatgggttt ctttatggtg gttgacaatt ttctcaaagc tatggaaata cgatgcccaa
     7921 agcgtacaaa taattaaaaa gccaagcaac gtgtacccaa tcgtataggg atcaagcgtg
     7981 tgcccaacta aaatagtcgt aatcgcaaca atactttcac caaatgtgat gataacaaat
     8041 aatccaaaac gttccgcaag atgtggaaaa tcaaccggca ctttgcgcaa tgttttagct
     8101 aaaaataacg gtaaaataat atcaactgca atcccaagat acatcactaa ataacgcgca
     8161 aatccttcaa aaaacaccga agtcgcagtt gtcaaaacac ctagtagaaa aacactccca
     8221 agaagtatcg ccactttccg cgcatttccc gtcaactgct tactaataac aaaatactgg
     8281 ataaccgtaa ttaagcgaat acctaaataa ccaattaaaa aagtataata cgtatttgaa
     8341 aacgttaaat caaaactcgc tgtcatcaaa attaagaaaa acatttgcgg caacatataa
     8401 agttcgggta gtttgatttt ctcaccgaag cgattgaaaa acattgtctg cccaacccac
     8461 gcccaaaaca tcggcgtgac catcaataaa tattcgccaa aataaacagc tgttttatcc
     8521 ggatgattat cgacgctaag taacagatgc gtcgttgaag caacagcagt tacgaatatt
     8581 aaatcaaaaa atagttctag ccaagaaact tttctttccg ccacaatctc accccattat
     8641 tatttctttt ttcaagtata ccacgtgaat ccgcctgcct tttgacagtt gctcgccgtg
     8701 aaaagtataa tggaaggaca aaatcatgga actactgaga tgggagaatt aaaaatggta
     8761 aaaacatggg aagaattttt aaaacaagaa gcgaaacagc cttattttat agaattaatg
     8821 gaagcagtta aggacgcgag agcaaagggg aatgtctatc cgactgaaga agatatgttt
     8881 tcgtgtttcc gcttatgtcc gtatgatcaa gtgaaagttg ttattttagg acaagacccg
     8941 tatcatggtc ctggacaagc gcatggccta agcttctccg tgcaaaaagg ggtgcgaatt
     9001 ccgccaagtc ttcgtaatat ttataaagaa ttaaagacag acttagatat tgaaccagct
     9061 gaccacggct atcttgccaa atgggcagag caaggcgtac ttttaatgaa cacgagttgg
     9121 agcgtggaag aaggcaaagc tggtagccac aaaaaactag gctgggcaac atttacagat
     9181 cacgttttag aagaactaaa taattacgac aaaccacttg tatttatttt atgggggaat
     9241 catgctataa aagccgcaag tggcatcaca aacccgcaac atttacttat taaaggagta
     9301 cacccatcac cgcttgccgc gagtcgaggc ttttttgaaa gcaaaccatt ttcgaaaacg
     9361 aatgcatttc ttgaggaaca tggaagaaaa ccaattgatt gggacttaaa cgaacagtaa
     9421 aaaaatacgt tattacaaaa ttttgttttt tctattatat agttttttac aaaagtgaaa
     9481 aaatttacat aattcgccta aaagcttttt acataaggtt tctttcatgt tatggttatt
     9541 ataggagaaa gtaaaattta aaaaagttcc taaagaaggt gactagtttg aagcataatt
     9601 ttacagaaga tgactttgtt tatggagaat catggggact cgtgcatcgg ggggttttag
     9661 aggacaaaga agtagaaaga atgaaagcgc tacgagacaa agtagtgggt aaaaaaggcg
     9721 tagcacaaac gacacttaag ccgataggta gtgtcagaat agacggagaa gtctatgaag
     9781 ctcgcttgaa aacaggttat ttggaagttg gaaaaccaat aattgcagta ggtatcgatt
     9841 tcggatacgt actagtcaat gaagatatac aggagggaga aaaatgacaa tgattggacc
     9901 tattattatc gcagtattga ttatcatctt tttaatcgta tttttcactt tagtaccagt
     9961 ggggttatgg attagtgcat tatccgcacg tgtaccagta ggactaggaa ctttaatcgg
    10021 aatgagattg cgtcgggttg taccttctcg cgttgtaaaa ccgttaatta aagcagtaaa
    10081 agctggactt gatttagaag taaaccaact tgaaagtcac tatttagcag gtggggacgt
    10141 ggataacaca gtagatgcgt taatcgccgc acaccgcgca aatattgaat tagatttcag
    10201 ccgtgcagca gcaattgacc ttgctggacg tgacgtactt gaagcagtac aaacttccgt
    10261 aacaccaaaa gttatccgta cacctgaatt tactggtgtg gcacaaaacg gggtagaagt
    10321 aaaagttatt acgcaaatta ccgtacaatc caatattgaa cgtatcgtcg gtggtgctgg
    10381 ggaagataca gttatcgctc gtgtcggtga agccgtagtt tctacagtcg gtgaaacgag
    10441 agaacataca gatgtacttg aaaatccaaa cagcatttcg aaaaaagtcc aagaacaagg
    10501 acttggagac ggaactgctt acactatttt atccattgat atcgctgaaa tgcgtattgg
    10561 tgacaacatt aaagcaaaac tagacatcga aaaagccaac gcggacatgg aagttgctca
    10621 agcagctgca tcgaaacgta aagcagaagc gattgcccta gaacaagaaa acagagcagc
    10681 ggttgtagcc gcagaagcag aagtaccacg tgcgctatct cgcgctttag aagaaggtaa
    10741 ccttggtgta atggattatt acaaaatgga aaatgtacaa tcagatacag ctatgcgcga
    10801 atcgattgca cacgaagacg aaaaataaac cttgatcttt tgcaagaaag aaggtgtttt
    10861 caatggattt aagtgatttt ctaaatagtg gttgggaaag tgttctagtt gtccttggta
    10921 ttgttggtgt cattataaat ttccttagca aggccggtaa aggcacagaa gaggaaaata
    10981 agaaagcgcc acaacctaga ccaaatttgc gttcaatgca ccaagcaagc cgtacgcaaa
    11041 ccactaagaa accagaaaaa cgcaaagtgt cacaagggac attcacacaa aataaagaac
    11101 aagacaaagt aattgctgaa caaaaagcag cgcaacaaaa aatgctaaga gaaatccgcc
    11161 gagaatcgga tgtggcaaaa gggaaaaaca tcattaaaag cactagtagt catcacaaaa
    11221 aagcgcgtaa attgcgcgga agattacaag aagcgataat tacgaaagaa atccttgata
    11281 agcccgtttc tttacggaaa aatcatctat aaaagcaaac ccaagaacta gtttcttggg
    11341 ttttttgttt ctgtgtcaaa actgttacat aataacgcca agttttaaaa tccctgtatt
    11401 acaactgtaa cattgacctg ctatgctgtg tgtatataaa aaaggggtgc gtggattgaa
    11461 aataatagca acgagaagaa agattttttt tgcgtttata gctttaatga tttctttttc
    11521 agtactattt ttaccaacaa ctaacgcttc agcagcgact acatataaaa tgacgacaac
    11581 ggctgatgta aatgttcgcg cagcagacaa caccaaaggt aaagtcatcg gtttttacaa
    11641 aaagggtaca acggttactt tcactgctaa aacaaaaaac aactggtata aaacgacata
    11701 caaaggcaaa gttggttatg tttcaggtaa atgtgtgact acatataaag cacctgttgc
    11761 aacaacgcaa agttttaccg cattaaataa cgaagcaaga aaacacattg gcaaacgcta
    11821 caaaattggc gctactggcc caagctgttt tgattgttca ggttacacac aatatgtata
    11881 ctctaaagga gttaaaaaat ccattcctcg tacagcgaag caacaatatg cctctgctaa
    11941 gaaaattaaa gctcaagaac taaaaaaagg tgatttgatt ttcttcaatt atggtaaggg
    12001 tgttgcacat gttgggattt atgttggaaa tggcaaaatg cttaatgcgc aaaataatgg
    12061 cgtaaaatac gacacaatca catctggcta ttggaaaaaa tatattgctg gatatggacg
    12121 agtagcaaat ttaaaataat tttactgagc gtcacttttt agtgatgctt ttttgtatga
    12181 aggaggagtt agggatgcaa tataaaataa aagaaatgcc actggaagaa ctagaaccta
    12241 aagtagtaga ggggcttttg gaacataaag aaagattagg ttatgacatt ccaaaaaaag
    12301 acacagagta tattggcttt gcggctttaa gtgaagtagg ggaaatagtt ggaggagtta
    12361 cagcgaaaat cagctacgga gaattatatg tgtctcttct ttctgttgat ccaagcacac
    12421 aaggatcggg cgtgggtaca gaattgatgg cccaaataga aagatatggt agagcaaata
    12481 actgccacca tatctcctta acaacattta gttaccaagc cccaggattt tataaaaaat
    12541 gcggttttac tgagcttgga cgtgtaaaag attttcctat aataggagaa gaaaagtact
    12601 tttttattaa atatttatag aattacatcg aactattttt gtttgcagca gcttgaactg
    12661 cattgataac agcggaacgg aaaccatcat tttctagtga tttcactgct tcaattgtag
    12721 ttccgccggg agaagtaacc atatctttaa gtttacctgg atgttcgccg gtttctagaa
    12781 ccgtttttgc ggcacctagc acagcttgtg cggcgaattt atatgcttta tcgcgaggca
    12841 tgccacttag gacggcgccg tctgctaaag cttctatgaa catataaaca taagctggtg
    12901 aagaaccgct gacgccaata actgcatcca tcaaattctc ggaaacaact tccgcttctc
    12961 caaaactagt aaaaatagct gtaacttcat taatttcttc agatgatacg tttatgttag
    13021 gcgaaataga tgacattgct tcaccgacaa gcgctggtgt atttggcatc acacgaacaa
    13081 tttttgtttt tgcggaagtg agttcttcta aatcttggat agttacgcca gctgctacag
    13141 aaataataat tttatcaggt gttagctgct cttttaccga cgttaaaatt tctgggatag
    13201 tgtaaggttt caccgctaaa ataataatat ctgcttgttc tacgagtttt tcggtatcgg
    13261 ttgttatttg caggccagta aatgccgctt ccagtggttt taatttttcg agatttcgac
    13321 caccaacaat gattgcttcg ctgttatcta aattcgcttg tgctaagccc cgaatcatcg
    13381 cagttcccat attacctgcg ccaataaagc cgattttctt cattttattc gcccctaaca
    13441 aaattctttt tttctattat ctcatgttac acggctttgt ccagtttttg ctgaaggcta
    13501 tcattgtgtc acagaggctt attctaaata cagcgatatt aattttgatg aatcatctcg
    13561 tcgaaagtag tggaaaaggt attatcgcca aattttatct atttctaatg gtttctaatt
    13621 ggcagtttgc agtagaaaaa aatattagat tactagctaa aagtatctta gtgaagaaaa
    13681 ctaagatatt ttttattttc gattgtattt tttgtttggg aaacccgatt ttgtgtttga
    13741 tcagtaaaca c
//
LOCUS       DASEAA010000063        13718 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.063, whole genome shotgun sequence.
ACCESSION   DASEAA010000063 DASEAA010000000
VERSION     DASEAA010000063.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13718)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13718)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13718
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.063"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..416)
                     /locus_tag="U0342_001542"
     CDS             complement(<1..416)
                     /locus_tag="U0342_001542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEM2422888.1"
                     /translation="MNERIFREKTRPVQVGNLTIGGSEELTIQSMTTTKTHDVEATVA
                     EIHRLEEVGCQIVRVACPDERAANALSAIKKRIHIPLVADIHFDYRLALKAIDAGVDK
                     IRINPGNIGRRDRVEKVVNASKAKNIPIRIGVNAGS"
     gene            complement(528..1328)
                     /locus_tag="U0342_001543"
     CDS             complement(528..1328)
                     /locus_tag="U0342_001543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1189 domain-containing protein"
                     /protein_id="HEM2422889.1"
                     /translation="MNIFKRFWKSLYSPADIASFRNDKIRKSIVYIIVLSFVTFLPLA
                     YFTNITTKNALKVGEETITNEIPDFKVTDGKLVLTDKNAKNIPISIDQDELHIYFDAS
                     GTLDKDDVDNKIASYDSAVAFLSDSIYITAAGVSQSVSYDTAGISDKSDLVHLYNSIE
                     SLAKYFIPIALLVLFIFTLGSVFFRVALYALFGFILSGFGRTGIAFRQNWMIASYSIT
                     LAAVFTMIMEALQIIVPFGMEINMVVSMIFVFLAIRSIPPSDPTILEK"
     gene            1630..2238
                     /locus_tag="U0342_001544"
     CDS             1630..2238
                     /locus_tag="U0342_001544"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM2422890.1"
                     /translation="MTYELPKLPYTYDALEPNFDKETMEIHYTKHHNTYVTKLNEAVA
                     GHPELASKSVEELVANLDSVPEDIRGAVRNHGGGHANHTLFWSILSPNGGGAPTGNLK
                     AAIESEFGTFDEFKEKFNAAAAARFGSGWAWLVVNDGKLEIVSTANQDSPLSDGKTPV
                     LGLDVWEHAYYLKFQNRRPEYIDTFWNVINWDEANKRFDAAK"
     gene            2368..4533
                     /locus_tag="U0342_001545"
     CDS             2368..4533
                     /locus_tag="U0342_001545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein 2"
                     /protein_id="HEM2422891.1"
                     /translation="MKLNFRKKKKDSTKKKRAIIPLRLNILFFIIFILFSVLILRLGI
                     VQIVQGDTYKRQLEETDNVTVSKNVPRGSIYDRNYNLLVGNSAVKSITYTRSQQTQTA
                     ETLHVAQTLEKLITVEPEKLTDRDLKDYWILTHQTESLNRLSAKEQALDSSKAYKIQV
                     DKVTKEDIASLTSEDLKVATIYKKMTTGYAMTESVVKNKDVTDEEIARVSENMDSLPG
                     VDTTTDWNRYYTYDETLRSILGSVSTAKEGLPKDKAEYYLSQGYSRNDRVGKSYLEAQ
                     YESVLAGSKSQSESVLDSKGNIIETVNKYEGSKGKDLVLSVDVEFQKAVEEILKKNIK
                     QGKQYAGSDLFDRAFVVAMDPYSGEVLALAGQKLNDKGEFEDYSLGTFTTAYAMGSAV
                     KGSTILGGIMDGAITNKTVFTDQPIVLKGTKPKSSWFNRTGAGNRPLDPVGALEISSN
                     SYMYQVAMKMGGANYVPNGPLRAPLSTFDDMRYYYNQFGLGVKTGIDLPGEQTGYKGD
                     DQTIGKILDFAIGQYDSYTPLQMAQYVSTIANGGSRIAPSMVKEIRNPSTNGDSVGTL
                     ATANEPKVLNKIGVSESDIKTVQQGFYEVTHGSTGTARTVFTSSDYDVAGKTGTADAF
                     YDGPKEGNKMASVWNTTFVGYAPVEKPEIAISVVVPWIYRPYGTDQKTNMKISKEVFD
                     KYFELKKERSESKKDTSKVEQPINNKEAAAKAQSEQTEN"
     gene            4731..5774
                     /locus_tag="U0342_001546"
     CDS             4731..5774
                     /locus_tag="U0342_001546"
                     /EC_number="1.2.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate-semialdehyde dehydrogenase"
                     /protein_id="HEM2422892.1"
                     /translation="MTKSYHVAVVGATGAVGTQMIELLEEAATFKIKQVSFLSSIRSA
                     GKKLSFRGEEVTIQEATPESFEGVDIALFSAGGSVSKALAKEAVKRGAIVIDNTSAYR
                     MDPTVPLVVPEVNEKALFSHKGIIANPNCSTIQMVAALEPIREAFGLNRIIVSTYQAV
                     SGSGVSAIQELKDGSRAVLDNKEFTPQIMPVKGDKKHYPIAFNALPQIDVFTENDYTY
                     EEMKMINETKKIMEDNTIKVSATCVRIPVVSGHSESVYIEVDKEGITAKEIQNELKNA
                     PGIVLEDDPANQVYPQAVQAAGKKEVFVGRIRADIDDPKGFHMWIVSDNLLKGAAWNS
                     IQIAESLVKLAII"
     gene            5786..6997
                     /gene="dapG"
                     /locus_tag="U0342_001547"
     CDS             5786..6997
                     /gene="dapG"
                     /locus_tag="U0342_001547"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM2422893.1"
                     /translation="MKIIVQKFGGTSVQNEKSRLMAFNHIKQVLKEGYKVVVVVSAIG
                     RYGDPYATDTLLELIGAKNTKLTAREQDTLLSVGETISASVFTNMLKEANIKAEAFSG
                     GQAGIITSDDHLNAKITEVDTARLKDALTNLDVAVVAGFQGITANGDISTLGRGGSDT
                     SAAALGVSLQADYIDIFTDVDGMMTADPRIVEHARSLPRVSYNEVSNMAYQGAKVIHP
                     RAVEIAMTAKIPMRIRSTYLESTGTLVTSLTNDSDHFDVKERIVTGVAHVTNLTQISV
                     QTDTVKAQQLAFEILADAGISLDFINISTNSVIFTVPEEKSHVVKQLLEDADLQTTVR
                     QACAKVSIVGAGITGVPGVTAKIVGALSEKNIPILQSADSHTTIWVLVKEEDLISAVN
                     ALHDVFCLEIK"
     gene            7012..7893
                     /gene="dapA"
                     /locus_tag="U0342_001548"
     CDS             7012..7893
                     /gene="dapA"
                     /locus_tag="U0342_001548"
                     /EC_number="4.3.3.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="4-hydroxy-tetrahydrodipicolinate synthase"
                     /protein_id="HEM2422894.1"
                     /translation="MDLGKVITAMVTPIHPEKDKVCKKRIHHLVNHLIKNGSDGLVIA
                     GTTGESPTLSHDEKIKLFRQVIETNDGRAKLIAGTGSNNTAETIAFTKEVAELGGIDA
                     VLIVAPYYNKPNQDGLYAHFAAVSEASDLPVVIYNIPGRSVVNIEPETIIRLAKLPNI
                     VGVKESSGNLDNISKIIAETSDDFQVYSGDDSLTLPILAVGGNGVISVASHVVGNEMQ
                     EMIQAFERGEVQKAAQIHRELLPLMNGLFSVPNPAPTKYLLNQQGISVGPVRLPLVDL
                     NAEQGTKLQAILEGLSK"
     gene            7913..9580
                     /locus_tag="U0342_001549"
     CDS             7913..9580
                     /locus_tag="U0342_001549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM2422895.1"
                     /translation="MTIKKAKNIKIIPLGGVDESGKNLYVVEIDEDIFILDAGLMFPE
                     NELLGIDIVIPDFKYLEENKDRVKAVFLTHGHEDAIGALPYLLQKIKAPVYGTELTIA
                     LAKSALKEHRKLRFKNFHVVNEETTLSFSKIDVSFFRTTHTIPDSVGIVLETSEGSIV
                     YTGDFKFDQSAKDGYASDLSHIAEFGEKGVLALLSDSSEAEHPGTTSSDSLIEEEIRH
                     AFRMADGRIIVACVASNLIRLQQVLDASVATKRKVAIVGKELERVFEIAGSLGKIVIE
                     EDLIVPLKELKKYSDDEITIIETGNLGEPIQSLQLMTKGNHPQFNIKPGDTVYITTTP
                     SPSLETMMAKTMDMLYKAGAKVLTMSNNLFISGHASQEDLKLMINLLKPRYFVPVHGE
                     YRMLISHAKLAHEVGMAKSEVFIVGKGEILEYKNDKMTAGNRVYSGNTLIDGLGVGDV
                     GNIVLRDRKLLSEDGIFIVVVTLNRKSKTITSGPEIISRGFIYVRESEHLIEESSKVV
                     TKIVEKNLQETGFEWAKLKQDIRDQLNRYLFEQTKRRPMILPIIMEV"
     gene            9669..11009
                     /locus_tag="U0342_001550"
     CDS             9669..11009
                     /locus_tag="U0342_001550"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464958.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2422896.1"
                     /translation="MAKFTYDVVIIGSGASGTTVAFEAQAAGLKVAIVEERSWGGTCV
                     LRGCDPKKVLVGAREARNLSTRLRGKGIKQAATISWTDLMAFKETFVENVPESRLENF
                     QEAGIETFFGAASFQDSHSLQVGDDLIQANKIVIATGATPSTLKVEGQEYIQTSDDFL
                     SLEKLPDSVVFIGGGYISFEFASIALATGREVHIIHHNSEPLKKFDPDFVAALVSNMK
                     EEGIHFHFDTDITKVENKGEKLHIHGKDGFSLQTDLIIGATGRKPNIAHLSLENANID
                     YTKKGIIVNEKLQTTNNPHIYACGDVAATKGAPLTPVVSMEAAFVAKNVIGGDEKMIY
                     PAIPSVVFTSPKLASIGISAEEAKAHPEKYQIKNHDTTNWYTYKRTNEQIALAKIIED
                     RESGQIKGAHFLSEEADYMINYVAILMKANLTLADLQSVIFAYPSPASDLTALN"
     gene            11062..11712
                     /locus_tag="U0342_001551"
     CDS             11062..11712
                     /locus_tag="U0342_001551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422897.1"
                     /translation="MEIWIIAGICAFLIFIAGIVILFFPARRKIGAILTSAGMLLMVG
                     SIIGIIVSFSHYQQVQNDVFNYSSKGTSQATPEETKTYKVNFEDSADNIKKKITTVTV
                     EKKETYSTSASKPVDGSITIALEITNNAVKTLETYPNQGQLEANKLDLNGGDAVLSNF
                     DTTEIKPGETAKGKIVFPVDNLDKVSDISWISYSFLSYLKDSSTPITTETGKIELK"
     gene            complement(11751..13352)
                     /locus_tag="U0342_001552"
     CDS             complement(11751..13352)
                     /locus_tag="U0342_001552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2422898.1"
                     /translation="MLTVNNVGLRYGDKKLFEDVSIKFLPGNCYGLIGANGAGKSTFL
                     KVLSGELDSQSGNVHIGSGERLAVLRQDHFQYDNELVLNTVIMGHERLYKIMDEKNAI
                     YMKEDFSDEDGIRAAELEGEFAELDGWEAESDAAVLLNGLGIPTDLHGKLMKDLTGGE
                     KVKVLLAQALFGKPDILLLDEPTNHLDIRAIHWLEEFLINFDNTVIVVSHDRHFLNKV
                     CTHIADLDFSKIKLYVGNYDFWYESSQLAQTMMGDRNKKKEEKMKELQDFIARFSANA
                     SKSKQATSRKKMLEKITLEDIQPSSRRYPFIQFKPDREVGNDLLTVTNLSKTIDGVKI
                     LDNLSFSINRNDKVALVGDDEVAKTVLFQILAGEMEPDEGSYKWGITTSQSYFPKDNS
                     EFFEENDMSLVEWLRQFSPEDDSEAFLRGFLGRMLFSGDEVLKKVRVLSGGEKVRCML
                     SKMMLSGSNVLLLDEPTNHLDLESITALNNGLEAFKGAMIFASHDHQLLQTIATRIIN
                     LSKDQFYNKEISYDEYLKEVMNVAE"
     gene            13492..>13718
                     /locus_tag="U0342_001553"
     CDS             13492..>13718
                     /locus_tag="U0342_001553"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MmcQ/YjbR family DNA-binding protein"
                     /protein_id="HEM2422899.1"
                     /translation="MNYEQILQEKVALCLTLQAAKETFPFDKKTHALTVGGKIFALIH
                     MYHGDLYVSVKCQPERIDLLRDEYLSIKPGY"
BASE COUNT         4679 a         2494 c         2611 g         3934 t
ORIGIN      
        1 aaactaccag cattaacccc aatacggatt ggaatatttt ttgctttaga agcattaacc
       61 actttttcca cccgatcacg gcgaccgatg ttaccaggat taatccggat tttgtcaaca
      121 cctgcatcaa tagctttaag tgctagtcgg taatcaaaat gaatatctgc cacaagagga
      181 atatgaatcc ttttcttgat ggcactaaga gcattggctg cacgctcatc aggacaagca
      241 actcgcacaa tctgacaacc cacctcttct aatcggtgaa tttccgctac tgttgcttcg
      301 acatcatgtg tctttgtagt agtcatgctt tggatagtta attcctcact accaccaata
      361 gttaaattac ctacttggac tggccgagtt ttttcgcgaa agattctttc attcaaagag
      421 accgctcctt tagactagct tttatttttt atcataccat tttcatgaaa caaaatcacg
      481 tgaatgatgc cacaaaaaag ccacctacgt gagcaagtgg ctatcattta tttctctaaa
      541 attgtagggt cgcttggagg aattgaacga atcgcaagga aaacaaaaat catactcacg
      601 accatattaa tttccattcc aaaaggaaca ataatttgta aagcctccat aatcatagtg
      661 aaaactgctg ccagggtaat actgtaagaa gcaatcatcc aattttggcg gaaggcgata
      721 ccagttcggc caaatccaga aaggataaat ccgaaaagtg catacagtgc tactcggaag
      781 aagaccgagc ctaacgtaaa gataaagagc actagtaaag caattggaat aaagtattta
      841 gctaaagact caatcgaatt atataaatga actaaatctg acttatcact aattcctgct
      901 gtgtcataac taacagattg cgaaacacca gctgcagtaa tataaatact atctgaaaga
      961 aaagctaccg cgctatcata agaagcgatt ttgttatcta catcatcctt atccagtgtt
     1021 ccagaagcat caaaataaat atgtagttca tcttgatcaa tcgagatagg tatattcttt
     1081 gcatttttat ctgttaacac taatttgcca tcagtcactt taaaatcggg gatttcattg
     1141 gtgatagttt cttcgccaac tttaagtgca ttttttgttg taatgtttgt aaaatatgct
     1201 aatggaagga atgttacaaa tgataaaaca ataatgtaca cgatactttt cctaatttta
     1261 tcatttcgaa acgatgctat atccgcaggg gagtataaac tcttccagaa gcgtttaaaa
     1321 atattcattc ttttttcaac acctcgccta atggtttaac ttttgagttt cagggaaaaa
     1381 gatacatgta tgtgcaaaag aacgtacttt ttccacctaa acttaatcat agctcgaaat
     1441 ggttgcaaaa tcaatgttga aacatcactg agcagaaaaa ttgcaagcat ttcaggagca
     1501 tggtaggcta aatggtgtaa gaagaaactg tttttaaggt tgatagtagt tctattgaaa
     1561 tgggacatga aacttttgcc ttatacgtca tttcttttca cgtaaaaaca atacaaggag
     1621 gaatttttaa tgacttacga attacctaaa ttaccttata cttatgatgc tttggagccg
     1681 aattttgata aagaaactat ggaaattcac tatacaaagc accacaatac ttatgtgaca
     1741 aaactaaatg aagcggttgc tggtcatcct gaacttgcaa gcaaatctgt ggaagaatta
     1801 gtagctaact tagatagcgt tcctgaagat attcgcggcg ctgtccgtaa ccacggtggc
     1861 ggtcatgcta accatacatt attctggtct attcttagcc caaatggtgg cggcgctcca
     1921 actggtaatt taaaagcagc aatcgaaagc gaattcggta cttttgacga atttaaagaa
     1981 aaattcaatg cagctgctgc agcacgtttt ggttctggct gggcttggct agtagttaat
     2041 gatggcaaat tagaaatcgt ttctacagct aaccaagatt ctccactaag cgatggcaaa
     2101 acacctgttc ttggcttaga tgtttgggaa catgcttact accttaaatt ccaaaatcgt
     2161 cgtcctgaat atatcgacac attttggaat gttattaact gggatgaagc taacaaacgt
     2221 tttgacgcag ctaaataata atcacaagac tcacttcggt gggtcttttt ttatttctaa
     2281 tgaatttcta atgaacttac agtggaaaaa tcatgttatt tcagctacaa tagggaaagg
     2341 tattattgaa aagtgaggta actatgcgtg aaactaaatt ttagaaaaaa gaaaaaagat
     2401 tccactaaga agaaacgcgc catcattcca ctacgtttaa atattctatt ctttattatt
     2461 tttatattat tctccgtgtt aattttacgt cttggtattg ttcaaattgt gcaaggggat
     2521 acgtacaaac gtcaattaga agaaacagat aacgtaacag tttccaaaaa cgtaccacgt
     2581 ggtagcattt atgaccgaaa ttacaatttg ctggttggta attcagcggt taaatctatt
     2641 acttacacac gtagtcaaca aacacagact gcagaaactc tacatgtagc ccaaacatta
     2701 gaaaagctaa ttactgtcga gcctgaaaag ttaactgacc gtgatttgaa agattactgg
     2761 attttaacgc atcaaaccga atcgctaaac cgcttatcag cgaaagaaca agcgcttgat
     2821 tcatctaaag cctacaaaat ccaagttgac aaagtgacaa aagaagatat cgctagcttg
     2881 accagtgaag acttaaaagt agcaaccatc tataagaaaa tgacaactgg atatgctatg
     2941 actgaatctg ttgtgaaaaa taaagatgta acagacgaag aaatcgcacg tgtcagtgaa
     3001 aatatggaca gtttacctgg tgtagatact actacagact ggaatcgtta ttacacatat
     3061 gatgaaactt tacgctcaat tttaggttct gtttccacag ctaaagaagg tctaccaaaa
     3121 gacaaagcgg aatactactt atctcaagga tatagtcgta atgatcgcgt tggtaaaagc
     3181 tatctagaag ctcaatatga aagtgtgctc gctggatcaa aatctcaatc agaaagcgta
     3241 cttgattcta aaggtaatat tattgaaact gtcaacaaat acgaaggctc caaagggaaa
     3301 gatttagttc tttctgttga tgttgaattt caaaaagcag tagaagaaat tctcaaaaaa
     3361 aacatcaaac aaggtaaaca atatgctggt tcagatttat ttgaccgcgc attcgttgtt
     3421 gccatggatc catattccgg agaagtcctt gcactagcag gacagaaact aaatgacaag
     3481 ggtgagtttg aagattattc ccttggtaca tttacaactg cctacgcaat gggctctgct
     3541 gtcaaaggtt ctactatcct tggtggtatt atggacggcg ctattacaaa caaaactgtt
     3601 ttcactgacc aaccaattgt actaaaagga acaaaaccaa agagctcatg gtttaacaga
     3661 accggagctg gtaatagacc acttgatcct gtaggagctt tagaaatttc ttctaactcc
     3721 tatatgtacc aagttgcaat gaaaatgggt ggcgcaaact atgtaccaaa cggacctctt
     3781 agagcaccac ttagcacctt tgacgatatg cgttactact acaaccaatt cggtctaggt
     3841 gtaaaaactg gcatcgacct tccaggtgaa caaactggtt ataaagggga cgaccaaaca
     3901 atcggtaaaa ttctcgattt cgctatcgga caatatgact cctacacacc acttcaaatg
     3961 gctcaatatg tttctactat tgccaatggg ggctcaagaa tcgctcctag tatggtaaaa
     4021 gaaattagaa atccaagtac taatggtgac tctgttggaa cacttgcaac agctaatgaa
     4081 ccaaaagtat taaataaaat cggtgtttct gaaagtgata tcaaaacagt acaacaaggc
     4141 ttctatgaag taacacatgg ttcaacaggt accgcaagaa ctgttttcac ttcaagtgat
     4201 tacgatgtcg ctggtaaaac aggcaccgca gatgcgttct atgatggacc aaaagaaggt
     4261 aacaaaatgg ccagtgtttg gaatacaaca ttcgtcggtt atgcgccagt ggaaaaaccg
     4321 gaaatagcaa tttccgttgt tgttccttgg atttatcgtc catatggtac ggaccaaaaa
     4381 acaaatatga aaatctccaa agaagtattc gacaaatact tcgaacttaa aaaagaacgc
     4441 tctgaatcga aaaaagatac ttcaaaagta gaacaaccaa ttaacaacaa agaagctgct
     4501 gcgaaagcac aatcagaaca aaccgaaaat taatcaaaaa ccactttcat ttatttggaa
     4561 gtggtttttt tatttcaaac taacaaacaa tttaaaaaaa tagttgctaa tgcgtagaaa
     4621 aaactgcgaa aaggctttgt ttatggtatg ataaagtaag tgtaaaatta accagatttc
     4681 tgtttttagg caggaatacg aggattaaat tgaaggagga attgtaaact atgacaaaaa
     4741 gctatcatgt cgcagttgta ggtgcaactg gtgcagttgg tacccaaatg attgaattac
     4801 tagaagaggc ggcgactttt aagataaagc aagtttcatt cttgtcttct attcgttctg
     4861 ctggaaaaaa actatccttc cgtggtgaag aagtaactat tcaagaagcc acacctgaaa
     4921 gttttgaagg cgtagatatc gctttattta gcgctggtgg ttctgtatcg aaagcacttg
     4981 cgaaagaagc agttaaacgt ggagctatcg ttattgataa cacgagtgca tatcgtatgg
     5041 atccaacagt tcctttagtc gttccagaag tgaatgaaaa agcacttttc tcacataagg
     5101 gtattattgc taatcctaac tgttccacta ttcagatggt agcagccctc gaaccgattc
     5161 gagaagcatt cggcttaaat cgtattattg tttccactta tcaagctgtt tctggctctg
     5221 gtgtaagcgc gattcaagaa ttaaaagatg gtagcagagc agttttagat aacaaagaat
     5281 tcactccaca aatcatgccc gttaaagggg acaaaaaaca ttatccaatt gcttttaatg
     5341 cattgccaca aattgacgtt ttcacagaga atgactatac atacgaagaa atgaaaatga
     5401 tcaatgaaac aaaaaaaatc atggaagaca acacaataaa agtttctgct acgtgcgttc
     5461 gtatcccagt agttagcgga cactctgaaa gtgtttatat cgaagtggat aaagaaggca
     5521 taactgctaa agaaatccaa aatgaactaa aaaacgcacc tggtattgtc ctagaagatg
     5581 acccagcaaa tcaagtttac ccacaagctg ttcaagctgc aggtaagaaa gaagtcttcg
     5641 ttggtcgtat tcgtgctgac attgacgatc ctaaaggttt tcatatgtgg attgtttctg
     5701 acaacttact aaaaggtgcc gcatggaatt cgattcaaat agctgaaagt ttagttaaac
     5761 tagcgattat ttagaggtgt aagtaatgaa aattattgtc caaaaatttg gcggaacatc
     5821 cgtacaaaat gaaaaatcac gtttgatggc attcaatcat atcaaacaag tactaaaaga
     5881 aggatataaa gttgttgttg tcgtttcagc cattggtaga tacggagatc cttatgcgac
     5941 agacacacta ttagaactta ttggtgctaa aaatacaaag ctaacagcaa gagaacaaga
     6001 tactttactc tcggtaggcg aaactatttc agcatctgta tttaccaata tgttaaaaga
     6061 agcaaatatt aaagcagagg cgttttctgg tggtcaagca ggcatcatta catcagacga
     6121 ccatttaaat gcaaaaatca cagaagtgga tacagctcgt ttgaaagatg cattaacgaa
     6181 ccttgatgta gctgtagttg ctggcttcca aggtattact gcaaatgggg atatttccac
     6241 attaggacgc ggaggaagtg atacatccgc agcggctcta ggagtttcgt tacaagcaga
     6301 ctatattgat atctttacag atgtagatgg aatgatgaca gccgatccac gtattgtaga
     6361 acacgcacgt tcacttccac gagtaagtta caacgaagta agcaatatgg cgtatcaagg
     6421 tgcaaaagtg atccatccac gtgcagttga gatagcgatg actgcaaaaa taccaatgcg
     6481 aatccgttct acttatttgg aaagcactgg aacacttgtt acttcattaa ccaatgattc
     6541 agatcatttt gacgtgaaag aacgaatagt aaccggcgta gctcatgtaa ccaatttaac
     6601 acaaatatcc gtacaaacag atacggtaaa agcgcaacaa ctcgcttttg aaatattagc
     6661 agatgcagga atcagccttg atttcattaa catctctacc aactctgtca tttttacggt
     6721 gccagaagaa aaatctcatg tagtaaaaca actattagaa gatgcagact tacaaacaac
     6781 tgtacgacaa gcttgtgcga aagtttctat tgttggcgcc ggaatcacag gcgttcccgg
     6841 tgttactgca aaaatcgttg gcgcattatc tgaaaaaaat atccctattt tacaatcagc
     6901 ggatagtcat actactattt gggtattagt aaaagaagag gacttaattt cagcagtcaa
     6961 tgcccttcat gacgtatttt gtttggaaat taagtaagga ggaaatgaaa gatggattta
     7021 gggaaagtaa ttacagcaat ggtgacacca attcacccag agaaagataa agtatgcaaa
     7081 aaaagaattc atcatctcgt gaatcactta atcaaaaatg gctcagacgg tttagtaatc
     7141 gctggaacaa ctggcgaatc tccaacttta tcccatgatg aaaaaataaa attattccgc
     7201 caagtaattg aaacaaatga cggacgtgca aaattaattg ctggaacagg ctccaataac
     7261 acagctgaaa caattgcttt tacaaaagaa gttgctgaac tcggtggaat tgacgctgtt
     7321 ttaatcgttg caccgtatta caataaacca aatcaagatg ggttatacgc gcactttgct
     7381 gcggtttctg aagcttctga tttacctgta gttatctata atattccggg tcgtagtgtt
     7441 gttaatatcg agccagaaac aattatccgc ctagcaaaat tacctaatat tgttggtgta
     7501 aaagaatcta gcggtaactt ggataatata agtaaaatca ttgctgaaac ctcagacgat
     7561 ttccaagtat acagtgggga tgatagctta actttaccaa tccttgcagt tggtggaaac
     7621 ggcgttattt ctgttgctag ccatgttgta ggaaatgaaa tgcaagaaat gattcaagca
     7681 tttgagcgtg gagaagttca aaaagctgct caaatccacc gagaattatt gccactcatg
     7741 aacggtttat tctctgtacc aaacccagca ccgacaaaat atttactcaa tcaacaaggc
     7801 attagcgttg ggcctgtaag actaccactt gtagatttga atgctgaaca aggaacgaaa
     7861 ttacaagcta tattagaagg actttctaaa tagttcaaag gaggtctacg ctttgacaat
     7921 aaaaaaagcg aaaaacataa aaatcattcc actcggcggt gtcgatgaaa gtggcaaaaa
     7981 tttatatgta gtagaaatag acgaagatat ctttatatta gatgcgggct taatgttccc
     8041 agaaaatgaa ttactaggaa ttgatattgt tattccagat ttcaaatatt tagaagaaaa
     8101 taaagatcgt gtaaaagctg ttttcctaac acacggtcac gaagatgcaa ttggagcatt
     8161 gccatacttg cttcaaaaaa tcaaagcacc agtttatggt acagaattaa cgatagcact
     8221 ggcaaaatca gcacttaaag aacaccgtaa actacgcttc aagaatttcc atgtcgttaa
     8281 cgaagaaaca actttatcct tttcaaaaat tgatgtttcc tttttccgta caacgcacac
     8341 tattcctgat tctgttggga ttgttcttga aacaagcgaa ggatctattg tttatacagg
     8401 ggatttcaaa ttcgatcaat cagcgaagga cggctatgct tctgatttaa gccacattgc
     8461 agaatttggc gaaaaagggg tactagcttt actttcagat agttcagagg ctgagcaccc
     8521 tggaacaacg tctagcgata gtttaattga agaagaaatt agacatgcgt tccgaatggc
     8581 agacggcaga attatcgtcg cttgtgtagc ttctaattta attcgcttac aacaagtact
     8641 cgatgcatcc gttgcaacca aacgtaaagt cgctattgtt ggtaaagaat tagagcgcgt
     8701 tttcgaaatt gctggcagtt taggtaaaat cgtcattgaa gaagacttaa ttgttccgtt
     8761 aaaagaactt aaaaaatata gcgatgacga aattactatt attgaaacag gtaatctagg
     8821 agaaccaatt caatcattac aattaatgac taaaggaaat catccacaat tcaacatcaa
     8881 acctggtgat actgtttaca ttacgacgac gccatcacca tctcttgaaa caatgatggc
     8941 taaaacaatg gatatgctct ataaagcagg tgcgaaagtg ctaactatga gcaataatct
     9001 attcatctct ggtcatgcaa gtcaagaaga cttaaaatta atgattaact tattaaaacc
     9061 aagatatttt gttccagttc acggagaata tcgcatgtta atcagtcacg ctaaattagc
     9121 tcatgaagtt ggtatggcaa aatcagaagt atttatcgta ggtaaaggtg aaattttaga
     9181 atataaaaat gataaaatga cagctggtaa tcgcgtatac tctggtaata ctttaattga
     9241 tggtttaggt gttggtgatg ttggtaacat cgtgctacgc gaccgtaaat tgctctcaga
     9301 agacgggatt ttcattgttg tagtaacact taatcgtaaa tcaaaaacca ttacttcagg
     9361 accagaaatc atttcacgtg gctttattta tgtgagagaa tcagaacatt tgattgaaga
     9421 atcttccaaa gttgttacaa aaattgttga aaaaaatctt caagaaaccg gctttgaatg
     9481 ggcgaaatta aaacaagaca ttcgtgacca attaaatcgc tacttatttg aacaaacaaa
     9541 acgacgtcca atgattttac caattattat ggaagtctag aatgaactgc tgcacattcg
     9601 tgtgtggcag tttttttcgt ttgaaagtga aatcagacgg gaaaacaagc taggaaggag
     9661 tgatttaaat ggcaaaattt acatatgatg tagtaataat cggaagtggc gcaagtggta
     9721 caacagtagc atttgaagca caggcagctg gattaaaagt agcaattgta gaggagcgga
     9781 gttggggtgg aacgtgtgtc ctcagaggat gcgaccctaa aaaagttctc gtcggagcaa
     9841 gagaagcaag aaatctttct accagacttc gcggcaaagg tattaagcaa gcagcgacaa
     9901 ttagctggac agatttaatg gcatttaaag aaacttttgt tgagaatgtg ccagaaagtc
     9961 gtttggaaaa ctttcaagaa gccgggattg aaacattctt tggtgcagct agtttccaag
    10021 attcccattc cttacaagtc ggcgatgatt taatacaagc taataaaatt gtcatcgcaa
    10081 caggagcaac accaagcacg ttaaaagtag aagggcaaga atacattcaa accagtgatg
    10141 attttttatc acttgaaaaa ctccctgatt ctgtcgtgtt tattggtggt ggctatattt
    10201 catttgaatt tgcctccata gcactcgcaa cagggagaga agtgcatatt atccaccata
    10261 atagtgaacc tttaaaaaaa tttgatcctg atttcgtggc tgcattagtg tccaatatga
    10321 aagaagaagg tatccatttc cattttgaca cagatattac gaaggttgaa aataaggggg
    10381 aaaaactgca tattcatggc aaagatggat tttcattaca gacagattta attattgggg
    10441 caactggtag aaaaccaaat atcgcgcatt tatcattgga aaatgccaac attgactaca
    10501 ctaaaaaagg cattatcgtt aatgaaaaac ttcaaaccac taataaccct catatctacg
    10561 catgtggcga tgtcgcggca acaaaaggag cacctttaac acccgttgtc agcatggaag
    10621 cagcatttgt tgctaaaaat gtcattggcg gcgacgaaaa aatgatttat ccagcaatac
    10681 caagcgtcgt ttttacgagc cccaaactgg caagcattgg tataagcgca gaagaagcaa
    10741 aagcgcatcc agaaaaatat caaattaaaa atcacgacac aacaaattgg tatacttata
    10801 aacgaaccaa tgaacaaatt gcgctcgcaa aaatcattga agatagagag tcggggcaaa
    10861 tcaaaggcgc tcattttctt agtgaagaag cagattatat gataaattac gttgccatct
    10921 taatgaaagc taatctaact ttggctgatt tacaatctgt tatatttgcc tatccatctc
    10981 cagcaagtga cttaactgct ttgaactaga ggctaaatat gttatagtga gggagaaatt
    11041 cgcataaaag gagcaaataa gatggaaatt tggatcattg ccggaatatg tgctttctta
    11101 atttttatcg caggtatcgt aattttattt ttcccagcca gacggaagat tggagctatt
    11161 ttaactagtg cagggatgtt attaatggtt ggctccatta ttggtatcat tgttagtttt
    11221 tcacattatc agcaagtaca aaatgatgtg tttaattatt cttctaaagg aacaagtcaa
    11281 gctaccccag aagaaacgaa gacgtataaa gttaactttg aagattccgc agataatatt
    11341 aagaaaaaaa tcactactgt gacggtcgaa aaaaaagaaa cttattcaac atccgcaagt
    11401 aagccagtag acggtagtat tactatcgct ttagaaatta ccaacaatgc agttaaaact
    11461 ctcgaaacct atccaaacca aggacaacta gaggcaaaca agttagattt aaatggagga
    11521 gacgctgttt tatctaattt tgatacaact gaaattaagc ctggcgaaac tgccaaagga
    11581 aaaatcgttt ttcccgtaga taatttagac aaagtttctg atatttcatg gatttcttat
    11641 agttttctaa gctatctgaa agattcatcc acaccaatca cgacagaaac tggcaaaatc
    11701 gaactaaaat aaaaacaata tcccgaaaat gggatattgt ttttttgtca ttattctgct
    11761 acgttcatta cttcttttag atactcatca taagaaattt ctttattgta aaattggtct
    11821 tttgataagt taatgatgcg cgttgcgatt gtttgtaata actgatgatc atgagaagca
    11881 aaaatcattg cgcctttaaa tgcttccaag ccgttattca atgctgtaat ggattctaag
    11941 tccaagtggt tagtaggttc gtctagtaaa agaacgttag aacctgaaag catcattttg
    12001 gataacatac aacgaacttt ttctccacca gataagacgc gtactttttt aagtacttca
    12061 tcgccactga atagcatacg accaaggaag ccgcgtaaga atgcttcact gtcatcttct
    12121 ggagagaatt gacgtaacca ttctacaaga ctcatgtcgt tttcttcaaa gaactctgag
    12181 ttatctttcg ggaaatagct ttggcttgtt gtaattcccc atttataact accctcatca
    12241 ggttccattt caccagcaag gatttggaaa agaactgttt tagcaacctc atcatcgcca
    12301 actaaagcaa ctttgtcatt tcgattaatc gagaaagaaa gattatcaag aatcttcaca
    12361 ccatcgattg ttttagacaa gtttgttact gttagaaggt catttccaac ttcacggtct
    12421 ggtttgaact gaatgaaagg gtaacgacga ctagaaggtt gaatatcttc cagcgtgatt
    12481 ttttcgagca tttttttacg acttgttgct tgttttgatt tcgatgcgtt cgcactgaaa
    12541 cgagcaataa agtcttgtaa ttctttcatt ttttcttctt ttttcttgtt acgatcgccc
    12601 atcattgttt gagctaattg gcttgattca taccagaaat catagtttcc gacatataat
    12661 ttaattttgc tgaaatcaag atccgcaatg tgcgtacaca ctttatttaa gaagtgacgg
    12721 tcatgggata ctacgataac agtattatca aagttgatta aaaattcttc taaccagtga
    12781 atcgcacgga tgtcaaggtg gttggtaggc tcatccagaa gtaagatatc tggtttaccg
    12841 aataaagctt gtgcaagaag cactttcact ttttctccac cagttaaatc tttcattagt
    12901 tttccgtgta agtcagtagg gatacctagg ccgtttaata aaacagcagc gtcagattct
    12961 gcttcccaac catctaattc agcaaattcg ccttctagtt ctgcagcgcg gataccatct
    13021 tcatcactga aatcttcttt catataaatg gcattttttt cgtccataat tttgtataga
    13081 cgttcatgtc ccatgattac tgtgttaaga actagttcat tatcatactg aaaatgatct
    13141 tggcgaagga cagctagacg ctcacctgaa ccaatatgca cattaccact ttgtgaatca
    13201 agctcgccag aaagcacttt taggaacgtt gatttaccag caccatttgc tccaataaga
    13261 ccataacagt tacctggtaa aaatttaatc gaaacatctt caaatagctt tttatcgccg
    13321 tagcgtaagc caacattatt tacagttaac attttcttcc tccaatacta agttacttct
    13381 tcttgaaatc agaaaaagca caattactac tattttaaca tggttagtgt agcaaagaaa
    13441 gcatacacac ataaataaat gttataatat caaaataagg aggagagccg gatgaattac
    13501 gaacaaattt tacaagaaaa agtcgcgctt tgtctgactt tgcaagctgc caaagaaaca
    13561 tttccgtttg ataaaaaaac gcacgcttta acagttggtg ggaagatatt tgcgctcata
    13621 catatgtatc acggggattt atatgttagc gttaaatgtc agcctgaaag aattgatttg
    13681 ttgcgtgatg aatatttgag cataaaacca ggttacca
//
LOCUS       DASEAA010000064        13353 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.064, whole genome shotgun sequence.
ACCESSION   DASEAA010000064 DASEAA010000000
VERSION     DASEAA010000064.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13353
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.064"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            175..4485
                     /locus_tag="U0342_001554"
     CDS             175..4485
                     /locus_tag="U0342_001554"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HEM2422900.1"
                     /translation="MKYMVKWRGFFIVAIIGLLVFQNVSPVLATIVDEKTTMITLKII
                     KEDKDTKEKINGSSFEIKNKKTGETKEVSITEHGTIIENSLSEGEYIVKEKKAAPGYT
                     LDEQTYNVTLAVKEEAITSSSTKKEAEKTPSVTEQPSKKGNLKAVITDNIFTAVKVEN
                     GTGNELGATNRIKNGGAVVLKMNFTFSGKNYKAGDTFKTVLPDSFNFGTTNLTGDFLP
                     STEAKWDLNASTRELTITFFKDGVQEGNYDIELSTALKSFSETEKTSQVAVFNTAGGN
                     TVYQLEIIPEVDKATQVMLEAMPSKVNPDKATVDARFNLTKETSELGELRLSDTAYGG
                     STIINRNSIKVYSTDISAKGTFIGSKQLLTENTDYELIYAPSGLTIKLKEGLKAKGYQ
                     VTYERSIDKTNSSLSTIGTSATTVGSSGMLSNGSMTISVTIKAYDHLIKKAVYNPVTQ
                     CIDWTINVNYDLANLTPGTVLTDVLTDDNVSYVADSLKIKRVTFNEESGEAVIGDDAS
                     NDWTVSTISDNGSFNMNYKKTDEKAYQVTYSTKLTDFSPRKIKNEVTDEKGVKATENF
                     DFKPDLLNKEAGEIDYYNNTMDWTITVNSEGINMQNINIVDEFSTGVKSLVSYNVYAY
                     PSDSGYKLLTEGRDFTIQKDVSPAGFKIKLIGNYATTDNKIVVKMKTKIDLTDGAKTL
                     DNKASFSYFDGSLTQYSETIKAEATPETSILANGGKVGKWNPATGEINWIVSVNAMGK
                     KYDKLVLDDEFLDGTTFVEGSLQYRNVVNSSELTDLSIPLEIKGTLAQVGDANYPTKI
                     DTSANKIHLEFGNLDTNRVFVKYKTKPKDNWFFSQWVNNKAIVSDNGADEQIYETKEF
                     AFLQNEVIKVAGNIDNVYGNKVNWNMELLNISPERTLSNPVITNRLEQGNTGAQFIKN
                     SFQVINTKTNEPINEENYDIIFEGNTFTIQFKNYTAMAPIKVSYSTISLLSGPISNET
                     TVEAEDFSNVPMFFKKRNAAVSPVFTVGSGSGIATIGTIKITKVDEDDTTKKLEGAKF
                     QLYTLDGEKSGQEIKTNSEGEILLDGIQSGKYKLVETEAPEGYNISDEYKEGKEITVN
                     SSGEELLLTIKNAMKKGKVILTKKDSASDEVLADAEFELQNAAGSKLKEKLTTAASGN
                     IEITDLAPGDYKLIETKAPAGYQLDATPVHFTIDFNQSEAAKVSKTNTAKTGTVVLTK
                     KDSATNTELADATFELRNEDGALVRENLVTDDNGEISVADLAPGDYKLIETKAPTGYQ
                     LDAAPVHFTIDFNQTEAANVTKTNKKKIGTIIVKFIDVEGNQLNDEEMHTGNVDEEYN
                     VKAKEIVGYTLVKDSANKKGMYKETSQEITFVYEKKAMPIIVEPTEPSKPTEQLTESA
                     TVAEPKPIKQNFKTTNKSTNNKRKLPSTGDEFPYTMLFIGLFVSVAGVFFLKKPKQIK
                     "
     gene            complement(4525..4872)
                     /locus_tag="U0342_001555"
     CDS             complement(4525..4872)
                     /locus_tag="U0342_001555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HEM2422901.1"
                     /translation="MNDHRILNALSYFSILFAPVIVPVLIWIFAKSEDVTHHAKVALL
                     THIIPTIAGVLCFSSVFVTALTNGGLLANVSFFVTGSLFIFTLIAIVGLFIFNIVRGI
                     QMLLTKNEEDAWI"
     gene            complement(4978..5541)
                     /locus_tag="U0342_001556"
     CDS             complement(4978..5541)
                     /locus_tag="U0342_001556"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2422902.1"
                     /translation="MDRRIKKTKQALNQALFTLLDEKTFQQITITDIVTVADVNRGTF
                     YKHYRDKEELLDSIIDEVLADLQKAYQDPYTHKTPFSIQTLTPSMIKIFDHVYGHQAF
                     YTQVIKSTIRPSFQNQVCDVIRELILNDFDYSADSSSIEPLLLASYQAHAIFGMIVFW
                     AEESFAHSPAFMSEQLLHIIQTKNPIL"
     gene            5725..6486
                     /locus_tag="U0342_001557"
     CDS             5725..6486
                     /locus_tag="U0342_001557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2422903.1"
                     /translation="MGKLNGKVAVVTGAASGMGQQIAILFAKEGAKVVVADLNLEAAQ
                     KTVALIEKEQGTSLAVVANVTKQDDIESMINKATETYGTLDILVNNAGIMDNFVPAGE
                     LTDELWDKVFAINTTGVMRATRKALHIFEEKGQGVIVNIASAGGLFGSRAGAAYTASK
                     HAVVGFTKNVGFQYANKNIRCNAIAPGAVNTNIGTTIYAPDQFGQERAMIGMGTNPRA
                     GDASEIAKVALFLASDDASFVNGTVITADAGWTAY"
     gene            6665..7738
                     /locus_tag="U0342_001558"
     CDS             6665..7738
                     /locus_tag="U0342_001558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate cyclase"
                     /protein_id="HEM2422904.1"
                     /translation="MVQQLVSNAAILLAGFYIISLVYKEPITKELSINRKMVIGVWAG
                     LLGFALMIFGIPISNNVIVDLRHIPIIMVGFYGGPIPAIVSAVIITASRFLISVNSAA
                     MMAGVIMMLIGIITALFSKRLEKYNIWGVFILNIIACGFVVVNLHLILAKEPDFWINM
                     FIFVSIALVIGAVSAGLMKNMIKSKQLFQKYEQDSTLDYLTRLSNVRQFDEKINHVMD
                     DGSRQVTLMLIDIDYFKNINDTYGHDAGDAILKQLAIILKRNTSDGSEAFRNGGEEFS
                     IVLLDCPIEKGNFFAEQVRKETEDHDFMIPSGKLVKITISVGVSSSKDGANTSEGLFK
                     SADEALYKAKLTGRNRVCIADEN"
     gene            7844..9211
                     /locus_tag="U0342_001559"
     CDS             7844..9211
                     /locus_tag="U0342_001559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HEM2422905.1"
                     /translation="MFDLMDNLLGVQSFGELNKDMPTTLFVTDADGNILISNKFTALT
                     VGMSLEELLRCNVRDLVEDGVYNDSVTLEAIRTKQKKTKVINTKKGFSIRSTSTPILY
                     PDGTVHLVVTMSDETQPDSFKTWRGEAISGNKESLLLEDYKENDGTVIVAESVAMKQI
                     VRVCNQIAPFDSKVLLYGESGTGKEVLSRYIHEKSEQAAGPFISINCAAIPKALFESE
                     LFGHEKGSFTGADIEKPGMLELADGGTLFLDEISEMPLELQAKMLRVLETGEVRRLGS
                     TTETKRRFRLISATNRNLGEMVEKGTFRRDLYYRINVVPVHIPALRERPQDIIGLARQ
                     FIQKFNQKYQKDFQLSGDKTKELLSHNWPGNVRELRNQIERLVVMSGNKEVTVAEIDD
                     FALDLHFKEQTKKDSLYLKDYLQDVEKHFILRVLEESNGNVTKAASVLGIHRSVLYRK
                     LKTLH"
     gene            9441..11024
                     /locus_tag="U0342_001560"
     CDS             9441..11024
                     /locus_tag="U0342_001560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl CoA:acetate/3-ketoacid CoA transferase"
                     /protein_id="HEM2422906.1"
                     /translation="MSKVIKASEAAKLLKDGDTVAFSGFGLACVNEEMAIAVEKRFLE
                     EGAPRNLTVMHASALGDRREKGMSHWGHEGLIKRWIGGIAIASPKMAKLIEEDKCEAY
                     NLPQGVITQLYREIAAKRPGVITKIGMGTFVDPRIEGAKMSASSKDNLVELLTIHDEE
                     WLFYPSFPIQVALIRGTVADEFGNLTLEKEGLHMEVLPIAQAVRNSGGIVIAQVESVA
                     KKGSLNPKDVRVPGILVDHIIISEPENHFQTENTQYNPAFSGHIQVPLGDIEPLPLDD
                     RKVIARRSAAELEPQTILNLGVGIPVNVSTVAAEEGVSDQLILTTEAGSVGGVPAGLA
                     DFGHAYNSEAIVDHHSQFDFYDGGGLDLSVLGLAQTDESGNVNVSKFGSRVAGCGGFI
                     NISQSAKKLIFAGTFTAGGLKTRVADGKLEILQEGKAKKFIKQVQQITFSGEYASTTD
                     QIILYVTERAVFRLENGKMVLTEIAPGVDLEKDILGQMEFEPVIASDLKVMDSGMFSE
                     QWGGLKTIIEKQTREGVSI"
     gene            11021..12244
                     /locus_tag="U0342_001561"
     CDS             11021..12244
                     /locus_tag="U0342_001561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OFA family MFS transporter"
                     /protein_id="HEM2422907.1"
                     /translation="MTKEINRWGVLIGSVGVLLCTGAVYAFSVFAGPLSAAHGWTIPQ
                     VMMAFTINAAIGPIPTILGGILTDKGKAKWAILIGGILFGLGFALTGFATSTTMLYLS
                     YGVLAGLGQGFAYSGCLSNTIRLFPDKRGLASGLITAGMGGATIIAAPIANHLIETYN
                     VMTAFKIMGAVYIAVVIGCSFLIRVAPAGYAPKGWTPPANNAAGMVNVPWTGMVRTVT
                     FYLILLMLGIGAFSGLMIASNASLIGQNMFGLTAASAAAYVSIYSLSNCLGRVVWGAV
                     SDRLGRSNTLMIIYTVIALSLLALATLQSVVGFVIGIIGLGLCFGGTMGVFPSIVMEN
                     YGPKNQGVNYGIVFIGYSTAAFFAPKMAAQIAGQNGGDFTQAFYIAIALAAVGLCINI
                     VYKLREKKQPTKELA"
     gene            12266..13195
                     /locus_tag="U0342_001562"
     CDS             12266..13195
                     /locus_tag="U0342_001562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF561 domain-containing protein"
                     /protein_id="HEM2422908.1"
                     /translation="MSLTEMLQIKYPILQGAMAQIATYELASAVSNAGGLGIIASGGM
                     SADTLREQIRLCKEKTTKPFAVNIMLMMPNCPELVDVIIEEDVRVVTTGAGTPKPFME
                     KFKAAGIKVIAVIPSVKIAQKMEEIGVDAVVAEGTEAGGHVGETTTMALVRQVVSAVN
                     IPVIAAGGIADGHGMAAVYALGASGVQIGTLFLVAEECPVPASFKQAVLDATDTSTTV
                     TGRRNGAPVRSIKNPMIQKYVELENENASRDKLEELTLGSLRKAVHEGDVENGSVMAG
                     QICGMLKEIRSTSDIIESLMKESKQVASNLVIQ"
     gene            complement(13241..>13353)
                     /locus_tag="U0342_001563"
     CDS             complement(13241..>13353)
                     /locus_tag="U0342_001563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422909.1"
                     /translation="ISILFHNDIASLIAVIITAVLLIYLMVDLTKMYRRK"
BASE COUNT         4608 a         2119 c         2803 g         3823 t
ORIGIN      
        1 tattgaaaaa gtatattttt agcaaaaaac atactttttt gttcactaaa aagacacaat
       61 aaatccgctt tgttgttctt taagaacatt ttcgacttct cgcccattgt tataattcaa
      121 caagtcatag gtcttataca acagacacaa cttgcatagg aggaaaacag cttaatgaaa
      181 tatatggtga aatggagagg tttttttatc gttgcaatta ttggtttact cgtttttcaa
      241 aacgtgtcgc ctgtattagc aaccattgtt gatgaaaaaa caacaatgat aacgcttaaa
      301 ataatcaaag aagataaaga tacaaaagaa aaaatcaatg gttcttcttt tgaaattaaa
      361 aacaaaaaaa ctggagaaac aaaagaagtt tctataactg aacacgggac aattatagaa
      421 aattcacttt cagaaggaga atatattgtt aaggaaaaga aggctgctcc aggatatact
      481 ttagacgaac aaacttataa cgtcacttta gctgttaaag aagaggctat aacttctagt
      541 tcaacaaaaa aagaggcaga aaaaactcca tctgttacag aacaaccctc taaaaaaggg
      601 aatctgaaag cagttataac agataatatt tttactgcag taaaggtgga aaatggaact
      661 ggaaatgaac ttggtgcgac taaccgtata aaaaatggcg gagcagtagt tctgaaaatg
      721 aattttactt tctcagggaa aaactacaaa gctggagata catttaaaac ggttttacca
      781 gattcattca actttggaac gactaattta acaggagatt tcttaccttc aactgaagcg
      841 aaatgggatt tgaatgcaag cacacgtgaa ttaaccatta ctttttttaa agatggtgtg
      901 caagaaggta attatgatat tgagcttagt actgctttaa aaagtttctc tgagacagaa
      961 aaaactagtc aggtagcggt gtttaataca gcgggtggta atacagttta ccagttagag
     1021 attattcctg aagtagacaa agccacacag gtaatgctag aagcgatgcc gagtaaagtc
     1081 aatccggata aagctactgt ggatgcgaga tttaatttaa ctaaagaaac tagtgaacta
     1141 ggcgaactta gactatcgga tactgcttac gggggttcga ctattattaa taggaatagt
     1201 attaaggtct actcaacaga tattagtgct aaaggaacat tcattggctc aaagcaatta
     1261 cttactgaga atacagatta tgaattgatt tatgcacctt caggattaac aattaaatta
     1321 aaagaaggtc taaaagcaaa agggtatcaa gttacctatg agcgttccat tgataagaca
     1381 aattcgtctt tgagtactat cgggacttca gcaacaacag ttggaagttc tggcatgtta
     1441 tcaaatggaa gtatgaccat ttcagtaaca ataaaagcat atgatcattt aattaaaaaa
     1501 gcagtttata accctgtaac tcaatgtatt gattggacaa ttaatgttaa ttatgattta
     1561 gcaaacttga ctcctggtac ggttttaaca gatgtattaa cagacgataa tgttagttat
     1621 gttgcagatt ctttgaagat taagcgagtc acttttaatg aagaatcagg agaagcagta
     1681 ataggcgatg atgcgtctaa tgattggact gtttcgacta tatcagacaa cggtagtttt
     1741 aatatgaact acaagaaaac tgatgaaaaa gcatatcaag taacgtattc tacaaaacta
     1801 accgatttta gtccacgaaa aattaaaaat gaagtaacgg atgaaaaagg tgttaaagca
     1861 acagaaaact ttgatttcaa gccagactta ctaaataaag aagctggaga gattgattat
     1921 tataataata caatggattg gactattaca gttaattcgg aaggtattaa tatgcaaaac
     1981 attaatatcg ttgacgagtt ttctacaggt gtaaaaagtt tagtcagcta caatgtgtac
     2041 gcttatcctt ctgattcagg ctacaaatta ttaacagaag gtagagactt taccatccaa
     2101 aaagacgtct cgccagctgg gtttaaaatt aaacttatcg gtaactatgc gacaacagat
     2161 aataaaattg ttgtgaaaat gaaaacaaaa attgatttaa ctgatggagc aaaaacacta
     2221 gataataaag cctcgttttc atattttgac ggtagtttaa cccagtattc agaaacaata
     2281 aaggcagaag caacaccgga aactagtatt ttagctaacg gtgggaaggt cggtaaatgg
     2341 aatccggcaa ctggtgaaat aaattggatt gtatctgtca atgcaatggg gaaaaaatat
     2401 gataaattgg ttttagatga tgaattttta gatggtacaa cctttgttga aggatcttta
     2461 cagtatcgta atgtagttaa ttcatccgag ctgaccgact tgagtattcc tctagagata
     2521 aaagggactt tagcacaagt tggggatgct aattatccaa ccaaaataga cacatcagcc
     2581 aataaaatac atttggaatt tggtaattta gatactaatc gtgtatttgt taaatataaa
     2641 acaaaaccaa aagataattg gttcttctca cagtgggtaa acaataaagc tatcgtctca
     2701 gataatggag cagatgaaca aatatacgag acgaaagagt ttgctttttt gcaaaatgaa
     2761 gttattaagg tagctggaaa catagataat gtctatggaa ataaagtgaa ctggaatatg
     2821 gaactcttga atatttctcc agaaagaaca ctgtctaatc cggttattac caatcgattg
     2881 gaacaaggaa atacgggcgc tcagtttatt aaaaatagtt ttcaggtaat taatacaaaa
     2941 acgaacgaac cgataaacga agaaaattat gatattattt ttgaaggaaa tacctttacc
     3001 attcaattta aaaactatac tgcaatggcg ccaataaaag taagctacag cacaataagt
     3061 ttactttcag gaccaatttc taacgaaacg acggtggaag cagaagattt tagtaatgtt
     3121 ccaatgttct ttaaaaaaag aaatgcagca gtatcaccag tctttacagt gggatctgga
     3181 tcagggattg caacgattgg cacgattaaa atcacaaaag tggatgaaga cgatactacg
     3241 aagaaattag aaggcgcaaa atttcagctt tacacactag atggtgaaaa atctggacaa
     3301 gaaataaaaa ctaattcaga aggtgaaatt ctactagatg gtatacaatc tgggaagtat
     3361 aaattagttg aaacagaagc tccagaagga tacaacatta gcgatgaata caaagaagga
     3421 aaagaaatta ctgttaattc atctggtgag gaacttcttt taaccatcaa aaatgctatg
     3481 aaaaaaggca aggttatttt aacgaaaaag gacagtgcat cagatgaagt attagcagat
     3541 gccgagtttg aattacaaaa cgccgctggg tcaaaactaa aagaaaaact aacaacagct
     3601 gcgagcggta atatagaaat aaccgattta gcaccaggcg actataagtt aattgaaacc
     3661 aaagccccag ctggttacca attagacgcg accccggttc atttcacaat tgattttaac
     3721 cagtcagaag cagcgaaagt aagcaaaacc aacacagcaa aaacaggcac ggtagtgcta
     3781 acgaaaaaag atagcgcaac aaataccgag ctagctgacg ccacatttga gttgcgaaac
     3841 gaggacggag cattagtccg cgagaatctc gtaacagatg ataatggaga aattagcgta
     3901 gctgatttgg caccaggcga ctataaatta attgaaacca aagccccaac tggttaccaa
     3961 ttagacgcgg caccagttca tttcacgatt gattttaacc aaacagaagc ggctaatgta
     4021 accaaaacca acaagaaaaa aattggtaca attatagtta aatttataga tgtagagggc
     4081 aatcaattaa atgatgagga aatgcatact ggaaatgttg atgaagaata caatgtgaaa
     4141 gctaaagaaa tcgttggcta cacattagtt aaagattccg ctaacaaaaa aggtatgtat
     4201 aaagaaactt cacaagaaat aacctttgtt tatgagaaaa aggcaatgcc gattattgtg
     4261 gaacctactg aaccatcaaa accaacagaa cagctaacag aatcagctac agtagcagag
     4321 ccaaaaccta taaaacaaaa ctttaaaaca acaaacaaat caacaaataa taagagaaaa
     4381 cttccttcta caggagatga gttcccttat acaatgctat tcattggatt gtttgttagt
     4441 gttgctggag tattcttctt aaaaaaacct aaacaaataa aataaaaaaa agctatccta
     4501 agaaatttag gatagctttt tcatttaaat ccaagcatct tcttcatttt tcgttaaaag
     4561 catttgaata cctcgaacaa tattaaagat aaacagtcca acaatagcta ttagtgtaaa
     4621 tataaataag ctaccggtaa cgaaaaatga tacatttgcg agtaagccgc catttgtcaa
     4681 agctgtaacg aaaacactgg agaaacatag aacaccagcg atagtcggaa taatgtgagt
     4741 tagtaatgca actttagcat gatgagtaac atcctctgat ttagcaaaaa tccaaatcaa
     4801 tactggcaca ataacaggtg caaataggat actaaaataa cttaaagcat ttaaaatacg
     4861 atgatcattc ataatcaaca cacctttcta agatgtcttt attatagcaa gactaggatt
     4921 atgaagccct cgtttcaagt tacaaagaag gaaaataata taacaaatat gtaagaatta
     4981 taagattgga tttttagtct gaataatatg aagaagttgc tctgacataa acgccggtga
     5041 atgagcaaaa ctttcttctg cccaaaaaac aatcatgccg aaaatcgcat gtgcttgata
     5101 agatgcaagt aacaagggct ctatactcga actgtcagct gaataatcaa agtcatttaa
     5161 aatcagttcc cgaataacgt cacaaacttg attttgaaaa ctgggacgga ttgtcgattt
     5221 tataacttgt gtataaaaag cttgatgacc gtatacatga tcaaaaattt ttatcatgga
     5281 aggtgtaagt gtttgaatgg aaaaaggcgt cttatgtgta taagggtctt gatacgcttt
     5341 ttgtaaatca gccagcactt catcaataat actatctaaa agttcttctt tgtcacggta
     5401 atgtttatag aacgtgcctc gattaacatc tgctactgta acaatatccg taatcgtaat
     5461 ctgttgaaaa gttttttcat caagaagagt aaataaagct tggtttaagg cttgttttgt
     5521 ttttttaatc cttctatcca tcatttgaaa ctcccatccg agaaaatttc ctactactat
     5581 acatataacg caaaagtgtt gcttaatcaa caaaacaggc tttctttaca tattgatagc
     5641 gctttatatc ggagctataa ttaaaataag aaggagagaa attttatcct ttttagcgta
     5701 acaaaagtga aggaggaaat aacaatgggg aaattaaatg gaaaagtagc cgtagtaact
     5761 ggtgcagcgt ctggaatggg gcaacaaatt gcgattcttt ttgcgaaaga aggggcgaag
     5821 gttgttgttg cggatttaaa tttagaagcg gcacaaaaaa cagtagcgtt aattgaaaaa
     5881 gaacaaggta catcacttgc ggttgttgcg aatgtcacga aacaagacga tattgaaagc
     5941 atgattaaca aagctactga gacatacggc acgttagata ttttagtaaa caatgcgggc
     6001 atcatggata attttgttcc agccggcgaa ttaactgatg aactttggga taaagtgttt
     6061 gcgataaata caactggtgt aatgcgagca actagaaaag cacttcatat ctttgaagaa
     6121 aaaggacaag gtgttatcgt taatatcgca tctgctggag gtttgtttgg ttcaagagca
     6181 ggggcagcgt atacagcttc taaacatgct gtcgttggtt ttacaaaaaa tgttggtttc
     6241 cagtatgcta ataaaaatat tcgctgtaat gctatagcac ctggagctgt aaatacaaat
     6301 attggtacta ctatttatgc tccagatcaa tttgggcaag aacgagctat gattggaatg
     6361 ggaacaaatc ctcgagctgg tgatgcttct gaaatcgcca aagtagctct atttttagct
     6421 tcggatgatg ctagttttgt aaacgggacg gtaattacag cagacgctgg ttggacagct
     6481 tactaaaaat ataaaaaatc cgcatgagag aattattttc ttttgcggat tttttatgag
     6541 aaaatagaaa gatggatatt ttttaacaac ttcgcgttta ggggttgttt ctttgtgtag
     6601 agagaatgaa tagttgtgag cataatgggg tattaaataa caaagtgaaa ggcggggatg
     6661 ctttttggtt caacagttgg taagtaatgc agcgatatta ctcgcaggat tttatattat
     6721 ttctttagtc tataaagaac caattacgaa agaattatcg ataaatagaa aaatggtgat
     6781 aggcgtatgg gcagggctac taggatttgc gctaatgatt tttgggatac cgatttcaaa
     6841 taatgtaatt gttgatttgc gtcatatccc tattattatg gtgggttttt atggcgggcc
     6901 cattccggca attgtttcgg cggtcattat tacagcttca cgatttttaa tttcagtgaa
     6961 ttctgcagcg atgatggctg gtgtaatcat gatgctgatt ggcattataa cagctctttt
     7021 cagcaaacgc ttagaaaaat ataatatttg gggcgttttt attttgaata ttattgcgtg
     7081 tggttttgta gtcgttaact tacatttgat tttagcaaaa gagccagact tctggataaa
     7141 tatgtttata tttgtatcga tcgcgcttgt aattggcgct gtttccgcag gtttaatgaa
     7201 gaatatgatt aaatcaaagc aattgtttca aaaatacgaa caagactcta cgctcgatta
     7261 tctgacgcgg ttatcaaatg taaggcaatt tgatgaaaaa atcaaccatg taatggacga
     7321 tggaagtagg caagtgacat taatgttaat cgatattgat tactttaaaa atattaacga
     7381 tacatacggc catgacgctg gtgatgccat tttgaaacaa ttagctatta ttttaaaacg
     7441 aaacacatca gatggttctg aggcatttag aaacggcggg gaagaatttt ccattgtctt
     7501 attagattgt ccgattgaaa aaggtaattt ttttgctgaa caagtgcgaa aagaaacgga
     7561 agatcacgat tttatgatac cgagtggaaa actagtgaaa attacaattt ccgttggggt
     7621 tagcagtagt aaagatggtg ctaatacaag tgaaggatta tttaaatctg ctgatgaagc
     7681 gctgtataaa gcaaaattaa ccgggcgaaa ccgagtatgt attgcagatg aaaattagct
     7741 tgtcgcaaaa aaacgagtac ttctaggaga tagcttatgt tataatagat tgtgtaatga
     7801 tgagcaaata actaggaaac tagtccaaaa ggatgagctt ttaatgtttg acttaatgga
     7861 taacttgctg ggagtacagt catttggtga attaaataag gacatgccaa cgacactttt
     7921 tgtcacggat gcagatggta atattttaat ttctaataaa ttcactgcgc tcacagttgg
     7981 aatgtcgctc gaagaattgc ttcgttgtaa tgtaagagac ctagtggaag acggtgtata
     8041 caatgattct gtcacactag aagcaatccg cacaaaacaa aagaaaacaa aagtgatcaa
     8101 tacgaagaaa ggttttagca tccgctcgac ttctacgcca atactttatc ctgatggcac
     8161 ggtgcattta gttgttacta tgtcagatga aacgcaacca gatagtttta aaacatggcg
     8221 tggtgaggca atttcgggga ataaagagtc gcttcttctt gaggattata aagaaaatga
     8281 tggcactgtg atagtagcag agagcgtcgc gatgaagcag atagttcgtg tgtgcaacca
     8341 gatcgctccg tttgacagta aagtcttatt atacggggag tccggtactg gtaaagaagt
     8401 cttgtcgcgc tatattcatg aaaaaagtga acaagctgct ggacctttta tctcgattaa
     8461 ctgtgcggca atcccaaaag cattatttga atctgagctt tttggacatg aaaaaggttc
     8521 atttaccggt gcggatattg aaaaacccgg gatgcttgaa ctagctgatg gtggcacatt
     8581 atttttagat gaaatttctg aaatgccact agagctacaa gcgaaaatgc tccgagtgct
     8641 tgaaactgga gaggtaagaa ggcttggttc aacaaccgaa acgaaacgcc gctttagact
     8701 gatttcagcg accaatcgaa accttgggga aatggttgaa aaaggaacat ttaggcgtga
     8761 tttatattat cgtattaatg ttgtgccggt tcacattcca gcactcagag agcgaccgca
     8821 agatattatt ggtcttgcac gtcagttcat acaaaaattc aatcaaaaat accaaaaaga
     8881 ttttcagtta agtggcgata aaacgaaaga attactttct cataattggc caggaaatgt
     8941 tcgtgaactt agaaaccaga ttgagcgatt agttgttatg tctggaaata aagaagtgac
     9001 tgttgcagaa atagatgatt tcgcactaga cttacatttt aaagaacaaa caaaaaaaga
     9061 ctcactttat ttgaaagatt atttgcaaga cgtggaaaaa cattttatat tgcgagtact
     9121 cgaagaaagt aatggaaacg tgacaaaagc ggccagtgtg cttggaattc accgctctgt
     9181 tttatatcga aaactaaaaa cacttcatta aatagaaggc ctaatcggat tttgcgatta
     9241 ggcctttttt gttgcatttt cgcgacttct gtttgtaaaa accatcattt tgacgtctct
     9301 tttttgcgac aataaataat atttgaattt ataaagtgct ttatagagcc atttttgatg
     9361 ttggcacgga agttgcttta taaagaactg catgtcatta caaatatatg tgaataattg
     9421 aacaatgagg agtgaggaat ttgtcaaaag taataaaagc tagtgaagca gcaaaattat
     9481 taaaagatgg cgatactgtt gcttttagtg gtttcggttt agcttgtgtt aatgaagaaa
     9541 tggctatcgc ggttgaaaag cgttttttag aagaaggggc accgcgtaat ctaacagtta
     9601 tgcatgctag tgcgcttggt gatcgcaggg aaaaaggaat gagtcactgg ggacatgaag
     9661 gattaattaa acgctggatt ggcggaattg cgattgcttc tcctaaaatg gcgaaactaa
     9721 ttgaagaaga caaatgtgaa gcatacaatt taccacaagg tgtaattacg caactgtatc
     9781 gtgaaattgc agctaaacgg ccaggcgtga ttacaaaaat tggcatggga acatttgtag
     9841 atccacgtat tgaaggggca aaaatgtccg cgagttctaa agacaactta gtagagctat
     9901 tgacgattca cgacgaagaa tggctatttt atccaagttt cccaattcaa gttgcgctca
     9961 ttcgcggaac tgtggctgat gaatttggga acttaacgtt agaaaaagaa ggcttacata
    10021 tggaagtctt accaattgca caggcagttc gaaattcagg cggaattgta atcgctcaag
    10081 tagaatctgt tgcgaaaaaa ggatcgctta atcctaaaga tgttagagtt ccaggaattt
    10141 tggttgatca tattattatt tcagaaccgg aaaatcattt tcaaactgaa aatacacagt
    10201 acaacccagc tttttcaggg catattcaag ttccgcttgg agatattgag ccacttccgt
    10261 tagatgaccg taaagtaatt gcgcgtcgtt cagcagcaga actagaacca caaactattc
    10321 taaatttagg tgtaggaatt ccggtgaacg tatcaactgt agcagcggaa gagggcgtga
    10381 gtgatcaatt aatactaaca acggaagctg gttctgttgg tggtgttcca gcaggtttag
    10441 cagatttcgg tcatgcttat aacagtgaag ctattgtcga tcatcattcg cagttcgatt
    10501 tttacgatgg tggaggactc gatttatccg tacttggttt ggcgcaaacc gacgaatccg
    10561 gtaatgtgaa tgtcagcaag tttggctcaa gagttgctgg ctgcggtgga tttattaata
    10621 tctcccaatc agcgaaaaaa ttaatttttg ccggaacttt tacagcaggt ggattaaaga
    10681 cgcgtgtagc tgacggaaaa ttagagattt tacaagaagg aaaagctaaa aagtttatca
    10741 aacaagttca acaaatcaca tttagtggcg aatacgcttc aacgaccgac caaatcatcc
    10801 tctatgtgac agagcgagct gtattccgtt tagaaaatgg caaaatggtt ctaacagaaa
    10861 tcgcgccagg agtagattta gaaaaagata tccttggaca aatggaattc gaacctgtta
    10921 ttgcgagtga tttaaaagta atggatagcg gtatgtttag tgaacaatgg ggcggcttaa
    10981 aaactattat tgaaaaacaa acaagagagg gagtatctat atgacaaaag aaataaaccg
    11041 ttggggagtc ttaattggct ctgttggtgt tctgctttgt accggtgcgg tatatgcatt
    11101 tagtgttttt gctggaccgc taagtgccgc tcatggttgg acaattccgc aagttatgat
    11161 ggcatttaca attaatgctg cgattggacc gattccaact attttaggtg ggattttaac
    11221 ggataaaggg aaagcaaaat gggctatttt aattggggga atcctgtttg ggcttggttt
    11281 tgcgttaaca ggatttgcta cttcaacgac gatgctttat ttgtcttatg gtgtccttgc
    11341 tgggcttggg caaggttttg cgtattcagg atgtcttagt aacacgattc gtcttttccc
    11401 agataaacgt ggtcttgctt ctggacttat tactgcagga atgggtggag cgacaatcat
    11461 tgctgcaccg attgcgaacc acttaattga aacatataac gtaatgacag catttaaaat
    11521 tatgggagct gtttatatcg cagttgtcat tggatgtagt ttccttattc gcgtcgcacc
    11581 agctggttat gcaccaaaag gttggacacc gcctgctaat aatgcagctg gtatggtaaa
    11641 tgtaccttgg acgggaatgg ttcgaacagt tactttttat ctgattcttt taatgctagg
    11701 tattggcgca ttttccggtc tgatgattgc ttctaatgca tccttaattg gtcaaaatat
    11761 gtttggcttg acggctgcat cggctgctgc ttacgttagt atttattcac taagcaactg
    11821 tttaggtcga gtagtttggg gcgctgtatc tgaccgtcta ggtagatcta atacattgat
    11881 gattatctat acagtgattg ctttatcttt actagcactt gcaacgcttc aatctgttgt
    11941 tggatttgtt atcggaatta ttggacttgg actttgcttt ggtggaacaa tgggcgtttt
    12001 cccgtctatc gttatggaaa attacggtcc gaaaaatcaa ggcgtcaact acggaatcgt
    12061 cttcattggt tattccacag cggccttctt tgcaccaaaa atggcagcgc aaatcgccgg
    12121 tcaaaacggt ggcgacttca cacaagcttt ctatatagct atcgcacttg ctgctgtagg
    12181 actttgcatt aatattgttt ataaattacg tgagaaaaaa caaccaacta aagaattagc
    12241 gtaaaaatag agaggagaaa agaaaatgag tttaactgaa atgctacaaa tcaaatatcc
    12301 aattttacaa ggggcaatgg cacaaattgc cacatatgaa ttagcttccg cggtatcaaa
    12361 tgcaggtggg ctaggaatta tcgcatcagg tggaatgtca gcagacacat tacgagaaca
    12421 aattcgcctt tgtaaagaaa agacaacaaa accgttcgct gtaaatatca tgctgatgat
    12481 gccaaattgt ccagaacttg tcgatgttat tattgaagaa gatgtgcgag ttgttacaac
    12541 tggggcaggc acgcctaaac catttatgga aaaatttaaa gcagctggaa ttaaagttat
    12601 cgccgttatc ccgtctgtga aaattgctca aaaaatggaa gaaatcggtg tggacgctgt
    12661 tgttgcagaa gggacagaag cagggggaca tgtcggagaa acaacaacga tggcactcgt
    12721 tcgtcaagtt gtttcagcag taaatattcc tgtcattgca gcaggcggta ttgcagatgg
    12781 tcacggaatg gcagctgttt atgcgttagg cgcaagcggt gtccaaatcg gcacactttt
    12841 ccttgttgct gaggaatgtc cggttccagc tagctttaaa caagcggtac ttgacgcaac
    12901 ggatacaagc acgactgtaa caggtcgtcg caatggtgcg ccagttagaa gtattaaaaa
    12961 cccaatgatt caaaaatatg ttgaactaga aaacgaaaat gcctccagag acaaattaga
    13021 ggaattaaca cttggctctc ttagaaaagc agtacatgaa ggtgacgttg agaatggttc
    13081 agttatggct ggacaaattt gtggtatgtt aaaagaaatt cgttccacta gtgatattat
    13141 cgaaagcctc atgaaagaat ctaaacaagt tgcaagcaat ttagtgattc aataataaaa
    13201 agagtcagta atatcctggt ggattttgct gactcttttt ttatttacgt cgatacattt
    13261 ttgttaagtc taccatcaaa taaataagta gaacagctgt aatgatgaca gcgataaggc
    13321 ttgctatatc attatggaat aaaatactga ttc
//
LOCUS       DASEAA010000065        13328 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.065, whole genome shotgun sequence.
ACCESSION   DASEAA010000065 DASEAA010000000
VERSION     DASEAA010000065.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13328
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.065"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..555)
                     /locus_tag="U0342_001564"
     CDS             complement(<1..555)
                     /locus_tag="U0342_001564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsQ-type POTRA domain-containing protein"
                     /protein_id="HEM2422910.1"
                     /translation="MAENKRVISIENRIPELKKYRKKKLVRHLAILIGIFVILIAITL
                     YFLSPLSKLDKIAVSGNKQLTENEVRKESGLEIGEFVIGISNGKTEDTLKKNTLIKDA
                     TVSKEGINDVQINITEFKTIGYQQQDGKYYDVLESGIMLTDQPRQFPIGNDLLFQNFK
                     NGKTLEKMVAQINKLPKDVVSSISE"
     gene            complement(578..1669)
                     /gene="murG"
                     /locus_tag="U0342_001565"
     CDS             complement(578..1669)
                     /gene="murG"
                     /locus_tag="U0342_001565"
                     /EC_number="2.4.1.227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyldiphospho-muramoylpentapeptide
                     beta-N-acetylglucosaminyltransferase"
                     /protein_id="HEM2422911.1"
                     /translation="MKVAISGGGTGGHVYPALALIRELKKIHPEAEFLYIGTEKGLEA
                     GIVKREGIPFEAIEITGFKRSLSLENIKTVMRFLSGAKKSKQILRDFKPDVVIGTGGY
                     VCGPVVYAAAKLKIPTLIHEQNSVAGLTNKFLSRYTDKVAICFEEVSDSFASEKIVFT
                     GNPRASEVVGVDSEGALETYGLVSGKPTVLVFGGSRGARGVNEAVEAILPEWNNRDFQ
                     LLYVTGDVHYERIKDSLAELNLGNHISVQPFIYDMPKILNAVTLVVSRAGATTLAELT
                     ALGVPSILIPSPYVTANHQENNARALEKNNAAIVITEAELKNTDLMATVDSILNDEAK
                     LNGMKLSAKQMGRPDAAAKLVEAVLSIMK"
     gene            complement(1666..3033)
                     /locus_tag="U0342_001566"
     CDS             complement(1666..3033)
                     /locus_tag="U0342_001566"
                     /EC_number="6.3.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanine--D-glutamate
                     ligase"
                     /protein_id="HEM2422912.1"
                     /translation="MKKIEMYHHKKVLVLGLARSGVSAATIMHKLGAFVTVNDQKPFS
                     ENPEAQGLLEQGIKVICGSHPIELLDEGFELVIKNPGIPYNNPMIEKALKLKIPVITE
                     VELAYQISEAPIVGITGTNGKTTTTTIIHHMLNAHKENSSLLAGNIGFPASAVAENAT
                     SDQYISMELSSFQLMGVETFKPHISVITNIYEAHLDYHTDRSEYVQAKWHIQKNQTAD
                     DFLVINWDQEELKNLTKQTKAQVIPFSTTQRLGQGSYVQNGNIMFNDEVIGARDNILL
                     PGEHNLENVLASVAVAKTLGVTNEEIMHVLETFKGVEHRTQFVVEWQGRKFYNDSKAT
                     NILATQSALKGFKNPVVLLAGGLDRGNSFDELLPFFKNVKALIVFGETADKIGRVGKI
                     AGIDVHYVDNVEAAVPVAYRESAPGDIILLSPACASWDQYRTFEVRGNAYMDAIGELI
                     EEVEK"
     gene            complement(3175..4149)
                     /locus_tag="U0342_001567"
     CDS             complement(3175..4149)
                     /locus_tag="U0342_001567"
                     /EC_number="2.7.8.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-N-acetylmuramoyl-pentapeptide-
                     transferase"
                     /protein_id="HEM2422913.1"
                     /translation="MSLYMLVSTFAVAFIITVIGVPLFIPFLVKLKFGQSIRDEGPKM
                     HEKKSGTPTMGAVVFITAMLISFLIFSFISGEVSAATWLLFIALALFGALGFLDDYIK
                     VVQKRNLGLTSKQKFLGQVAISILFYLVYHLNGFAETLNIPFTNIEVDLGWFFVIFIL
                     FWLVGFSNAVNLTDGLDGLVSGLSVIAFSAFGVIAFYQEQMDVAIFCFAIVGGMLGFL
                     LFNKNPAKIFMGDTGSLALGGSIAAISILVHQEWLLLLIGIIFVIETASVILQVFYFK
                     ATGGKRIFRMTPIHHHFELGGWSEWRVVLTFWGIGLIGAIISVCVVIF"
     gene            complement(4196..5671)
                     /locus_tag="U0342_001568"
     CDS             complement(4196..5671)
                     /locus_tag="U0342_001568"
                     /EC_number="6.3.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
                     6-diaminopimelate ligase"
                     /protein_id="HEM2422914.1"
                     /translation="MKLNELMQAIPVFTGEASETIEISHIAQDSRKVKPGTLFICIDG
                     ELVDGHQFASRAVELGAVAIIAEKQLDVSIPVIYVRDSKRAMAMLADYFYGSPTQALK
                     LVGITGTNGKTTVSHLVEQIVRENGEQTGLIGTMYRKIGDQILETKNTTPDSLTLQET
                     FRDMLLSGVSTAVMEVSSHALVQGRVYGSDYDVAVFMNLSQDHLDYHHTMEEYANAKS
                     LLFAQLGNSYHTSNPKIAVLNADDEESVRMQKATAAHVITFGIKQQADFKASNIRITS
                     HGSTFDLRTPIGNFTLKIKMIGNFSVYNVLAAIATSFALHIPMEKAIKTVESIPGVKG
                     RFELVHAGQEFPVIVDYAHTPDGLLNVLETIAEFAEKRVFVVVGCGGDRDKGKRPQMA
                     KIAVDYATNPIFTSDNPRSENPRAIIEDMIQGVPYSDSYVVHENRRDAIRFAVNEAEA
                     GDVILIAGKGHEDYQVIGDEVIDFDDRVEARIAIEKKLGLA"
     gene            complement(5846..8101)
                     /locus_tag="U0342_001569"
     CDS             complement(5846..8101)
                     /locus_tag="U0342_001569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="penicillin-binding protein"
                     /protein_id="HEM2422915.1"
                     /translation="MKRRIGNMRRGALVLFIFFTILFLLVSGRFLYLQITGEANGVPL
                     AAKASKQHLKSSVLEAKRGSILDRKGEVLAEDTASYTVAAVVSDKLSKTTKNPMRVVD
                     EEKTARILAKYIPMDESDILDKLNEKGKYQVEFGAAGKNISTETKAKIDKENLPGIEF
                     TRQSERFYPNGTFATQLIGFAQQEEEKNTTVLEGKMGIESRYNDILTGKNGKIDYSTD
                     RMGYILPNSKNKVTEAKDGKDITLTLDKKIQTFLEDTMTTVDAKYKPKNMMAVVADPK
                     TGEILAISQRPSFNPADRSTITGNSSSIWQDLPVEYAYEPGSVMKIISLASAIDTNTY
                     NANEYYQSGSYKVGDIAIHDHNNGNGWGSITYREGVERSSNVAFAKLLNKMGTDTFKT
                     YLDKFGFGKKTGIALPNETSGKILYNYPIEKVTTVFGQGTTVSMMQMIQAASAIASDG
                     TMKEPYVVSSVKDPNTGEETDTKTKIAGKPISAETAKKTRDELKNVISGEHGTGKLYA
                     IPGYDVAGKTGTSQIPDPKTGKYMTGADNYIFSFLGMAPADNPELVIYVTMQQPQLSG
                     SQTGGEAVSEVFNPVMKNSLQYMNIKPGDAEKLASEKVPVLAGKTIDEAKKIVKDKGL
                     EPIIVGNGKKIVQQLPQANAEIMQGQKVILMTDGDMTAPDMVTWSKDDALKVSEITGI
                     PFEFSGNGYVKSQSVSAGSVINSETKMKITLAPPEEISAFNQNHDQDTAEKNKKATDI
                     QENAGIGDLLN"
     gene            complement(8098..8460)
                     /gene="ftsL"
                     /locus_tag="U0342_001570"
     CDS             complement(8098..8460)
                     /gene="ftsL"
                     /locus_tag="U0342_001570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsL"
                     /protein_id="HEM2422916.1"
                     /translation="MSNVAYKSNLEPNRVHREAEQPKKQILKRGQMTLGEKVIITIAL
                     AIVLVVAFRIISVQAQIYTVNQEIQTKETKILEQQKSNEDLKVEVKDLGRYERILKIA
                     KEKGLKLDGDNVKVVDGQ"
     gene            complement(8477..9415)
                     /gene="rsmH"
                     /locus_tag="U0342_001571"
     CDS             complement(8477..9415)
                     /gene="rsmH"
                     /locus_tag="U0342_001571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA (cytosine(1402)-N(4))-methyltransferase
                     RsmH"
                     /protein_id="HEM2422917.1"
                     /translation="MFKHETVLLHETVDMLEVKPDGIYVDATLGGAGHSEYLLNKLNE
                     KGHLFAFDQDQTAINNAKIKLADYSDKVTFIKANFRDMKEALNERGIEAVDGILYDLG
                     VSSPQLDERERGFSYHQDAALDMRMDQEQELTAKIVVNEWSYQDLIRIFFQYGEEKFS
                     KQIAREIERRREVKPIETTGELVDIIKTAIPAPARRKGGHPGKRTFQAIRIAVNDELG
                     AVEDSLEKALTLLKPGGRISVITFHSLEDRITKHLFQEATKGPDLPPGLPVIPDEYKP
                     DFKLATRKPIVPSEEELEQNNRARSAKLRVIEKIIK"
     gene            complement(9428..9859)
                     /gene="mraZ"
                     /locus_tag="U0342_001572"
     CDS             complement(9428..9859)
                     /gene="mraZ"
                     /locus_tag="U0342_001572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="division/cell wall cluster transcriptional
                     repressor MraZ"
                     /protein_id="HEM2422918.1"
                     /translation="MFMGEYQHNIDIKGRLIVPAKFRELLGDNFVITRGLDKCLFAYP
                     QEEWKKLEEKLQTLPLTKKDARSFTRFFFSGASECELDKQGRINIPSNLLQYADLEKE
                     TVIIGVSSRIEIWSKSEWDDVFNEAEESFADLAENMIGFDI"
     gene            complement(10062..11309)
                     /locus_tag="U0342_001573"
     CDS             complement(10062..11309)
                     /locus_tag="U0342_001573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2422919.1"
                     /translation="MFRELHPNIRARILIQFLSKVIGSMIFPFMAIYFSREINSSVAG
                     FLLMINVLAQFLAGMYGGHLADIIGRKKLMVTGELLKVFAFLGMVLCNSPMFHSPWIT
                     FVMLLIIGVAQGLINPAGEAMLIDVSTPENRSFMYSVSYWANNLSIMIGIMVGGWFFV
                     DYLFPLLVVLFIMSFVTAWLTISLISETLQQKEMPHKGSYGLMGMLKNYGQVLHDYRF
                     LLYTIGGIAIMSIEFQRSNYISVRLAEDVKALLVHLGPLGNISLNGVQIVSVLTAVNT
                     LFIVLFTVPIARFVTKRAQQPIMYVGFTLFALGFAVCAFANNLTVLLLATMVLSIGEL
                     LYVPTRQTVLAAIVDDERRGAYMAFNGIIFQIGKMIGSVSLVFAPFIGKYGMGAFTIT
                     LGVLSIVFSAVALKSGWEKVLVK"
     gene            11426..13240
                     /locus_tag="U0342_001574"
     CDS             11426..13240
                     /locus_tag="U0342_001574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SgrR family transcriptional regulator"
                     /protein_id="HEM2422920.1"
                     /translation="MDKDYFTMRAHLYNITTDLEVSFKLNDVANIWFCTTKNAKRKLQ
                     QYQAKKMLTYLPGLGRGNVSRIIFPKQLELEVLDVLEQSLAEDAFSDILFLLQLPIPK
                     SWFTSISTEIQQIFGLQVTENQQEVLRSIVRRKLTTLDPLQTSVSMEAFLITQISDSL
                     VKYDEEKKKIIPHIAHHWKVSDDFTEWTFYLRKSVLFHHGRMLDSEDVKHTLMRSMQT
                     ESVSFWQLQDIQSIHCPNKFTISIQLKKTDPFFIRYLCTANMAILPRDIIFDEYTWIS
                     TGPFRVAERNDERLVLEAFDGYFLERPILDRVEFWTAQTGNNLKTIPMQFTSVDYEEN
                     LAYVERRKPGVGVNFICFNTHRNGAPQHPAFREAIYHLIDCQKASEQHFENYGTVASN
                     YYPEKSLPPKKHPEKIATLLKKANYQGEKVIFGTTQHPTAVKESKWIQEQAVEFGINL
                     ERKIITHQEASYSNVPAKETDFMMMGEIPASDDEMAYLDFLNNPYLLPQQLFNQAIIK
                     ELTEKLDAFKTEKDASKRDALQTSIDSWLTENHYLIYLHHPEKSQSLHSMIKGIAENP
                     YGYFDLSKVWIEISPLKTLKPDYRQSHRGKAPHTITQK"
     gene            complement(13170..>13328)
                     /locus_tag="U0342_001575"
     CDS             complement(13170..>13328)
                     /locus_tag="U0342_001575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3397 family protein"
                     /protein_id="HEM2422921.1"
                     /translation="GIVIVVTAAKKEGEIQFRKILRGYWRLCFFIFALLYVALYLYGI
                     VYSLVLMF"
BASE COUNT         3919 a         2839 c         2234 g         4336 t
ORIGIN      
        1 ttccgagata gaactaacaa catcttttgg taacttatta atttgtgcta ccattttctc
       61 aagtgtttta ccgtttttaa agttttgaaa tagcaaatca tttccaattg ggaattgtct
      121 tggttgatcc gttaacatga tgccactttc tagcacatca tagtatttac catcttgttg
      181 ttgatagcct atcgttttaa attcggtgat attaatttga acatcattta tcccttcttt
      241 agaaacggta gcatctttaa taagggtatt ttttttgagg gtatcctcag tttttccatt
      301 acttatcccg atgacaaact caccaatttc gagtccactt tcttttctta cttcattctc
      361 tgtaagttgc ttattgccac ttacagcaat tttatctaat ttactgagtg gggagaggaa
      421 atagagggta atggcgatca aaatcacaaa aattccgatt aaaatggcta agtgtcttac
      481 taattttttt ttgcggtatt ttttgagttc tggtatgcga ttttcaattg aaattactcg
      541 tttattttca gccattttat tcgctccttt ctgcgattta tttcataatg ctaaggactg
      601 cttctactaa tttcgctgct gcatctgggc gccccatttg tttagcactt agcttcatac
      661 catttaattt cgcctcgtca ttcaaaatcg aatcaactgt cgccattaaa tcggtatttt
      721 ttaattctgc ttctgtaatt acgatagctg cattattttt ttctaaagcg cgagcgttat
      781 tttcttggtg gtttgctgtc acgtatggac taggtatcaa aatacttgga acccctagcg
      841 ctgtaagttc tgcaagtgta gtcgctcctg ctcttgaaac aacgagcgtc acagcgttta
      901 aaatttttgg catatcataa ataaatggtt gaacactaat atgattaccc aaattcaact
      961 ccgccaaaga atcttttatt ctttcatagt gtacatcgcc cgttacataa agtagctgaa
     1021 aatcccgatt attccattct ggcaaaatag cttctaccgc ttcattcacg ccgcgagctc
     1081 ctctactgcc tccaaaaaca agcacagttg gcttccctga aactagtccg taagtttcca
     1141 gtgcaccttc cgagtccaca cctacaactt cagaagcacg tggattacca gtgaaaacga
     1201 ttttttccga tgcgaaagaa tcacttactt cttcaaaaca aatggctact ttatctgtgt
     1261 agcggcttaa aaatttattc gttaatccag caacactatt ttgttcgtgg attaaagtag
     1321 gaattttaag ttttgcggct gcataaacga ctggaccaca aacataacca cctgttccga
     1381 taacgacatc cggtttaaaa tcgcgcaaaa tttgtttact ttttttcgcg ccgctcagaa
     1441 aacgcattac tgttttaata ttttctaacg ataatgaacg tttgaaacca gtaatttcaa
     1501 tagcttcaaa cggaatccct tcacgtttaa cgattccagc ttctaggcct ttttctgttc
     1561 cgatatataa aaattccgct tcaggatgaa ttttttttaa ttctctgatg agagcaagcg
     1621 ctggataaac gtgtccacca gtaccgccac cacttattgc tactttcatt tttccacctc
     1681 ttctattagc tcgccgattg cgtccatata ggcattcccg cgaacttcaa atgttcggta
     1741 ttgatcccaa ctcgcacatg ctggtgaaag taagataata tctcctggtg ctgattcgcg
     1801 gtacgcaact ggaacagctg cctcgacatt atccacgtaa tgtacgtcaa tgccagcgat
     1861 tttcccaacg cggccaattt tatctgctgt ttcgccaaag acaattaacg cttttacatt
     1921 tttgaaaaat ggtagtaatt cgtcaaatga attaccacgg tccaacccac cagccagtaa
     1981 cacgactgga tttttaaacc cttttaatgc actttgagtt gctagaatat tcgttgcttt
     2041 tgaatcgtta tagaatttac gaccttgcca ttctacaaca aattgtgtcc ggtgctctac
     2101 acctttaaac gtttctaata cgtgcatgat ttcttcattt gtaacaccta acgtttttgc
     2161 tactgctacg gaagcaagca cattttctaa attatgctct cctggaagta aaatattgtc
     2221 acgtgcgcca atcacttcat cgttgaacat aatattgcca ttttgcacgt agcttccttg
     2281 accaaggcgt tgtgtggttg aaaacggaat aacttgtgct tttgtttgtt ttgttaggtt
     2341 tttaagctct tcttgatccc aattaattac taggaaatca tctgctgttt gatttttttg
     2401 gatatgccat tttgcttgaa cgtattcact acggtctgta tggtaatcta aatgcgcttc
     2461 ataaatattc gtgatgacgg aaatatgcgg tttaaatgtt tctacgccca ttaattggaa
     2521 cgaagatagc tccatcgaaa tgtattgatc actggtcgca ttttctgcaa ctgcggatgc
     2581 cggaaaaccg atgtttcctg cgagtaaaga actattttct ttgtgcgcat ttaacatatg
     2641 gtggatgatt gtggttgttg tcgttttacc atttgttcct gtaataccaa caattggtgc
     2701 ttcagatatt tggtaagcta attcgacttc cgtaatgact ggaattttga gttttaacgc
     2761 tttttcaatc attgggttgt tgtacggaat tccaggattt tttatgacaa gttcaaatcc
     2821 ttcatctaaa agttcaattg ggtgcgaacc gcaaataact ttaatacctt gctcaagtaa
     2881 accttgtgct tctggattct cgctaaaagg tttttgatca ttaacagtta caaatgctcc
     2941 cagtttgtgc ataattgttg ccgcgctaac accacttctt gcaagaccca agacaagtac
     3001 ttttttgtga tggtacattt caattttttt catttccttt ggttccccca tttatatcaa
     3061 aattggcggt cgaatttatg attttcacaa aaacgacgga aagcgccaac cagattctgt
     3121 aaaaaaacag ctaactagag acgcttttgc cgtaaaaaga ttacggcgca ttatttaaaa
     3181 aatgactaca cagacagaaa taattgctcc gattaacccg attccccaga acgttaaaac
     3241 aacacgccat tcggaccagc caccaagttc aaagtgatga tgaattggtg tcatacggaa
     3301 gattcgtttt cctccagttg ccttaaaata aaatacttgc aatataacag atgctgtttc
     3361 aataacgaaa ataattccga ttaagagtaa cagccattct tgatgtacta aaatagaaat
     3421 tgcggcgata cttccaccga gtgcaagcga accagtatct cccatgaaga ttttcgctgg
     3481 atttttatta aatagtagaa atccaagcat accgcccaca atcgcaaaac agaaaatcgc
     3541 gacatccatt tgttcttggt aaaatgcaat gacaccaaaa gcagaaaaag caatgacaga
     3601 aaggccagag acaagaccat ctaaaccatc tgttaaatta actgcattag agaaaccaac
     3661 taaccagaac aaaataaaga taacaaagaa ccaaccaaga tccacttcta tatttgtaaa
     3721 cggaatatta agcgtctcag caaaaccatt taaatgatat accagataga ataaaatcga
     3781 aattgccact tgacctaaaa acttctgctt tgaagtaagg cctagattac gtttttgaac
     3841 tactttgata tagtcatcta ggaaacctaa tgcgccaaat agtgccagcg cgatgaatag
     3901 cagccacgta gctgcactaa cttcaccact gatgaacgaa aagatcaaga aactaataag
     3961 cattgcagta atgaaaacaa ctgcccccat tgtcggtgtc cctgatttct tttcatgcat
     4021 tttcggacct tcatctctaa tactttggcc gaattttaat ttcaccaaga atggtataaa
     4081 tagtggtaca cctatcaccg taatgataaa agcaactgca aatgttgata ctaacatgta
     4141 taaagacaca ataaattctc cccaatctgt ttgtcaaagc acttcacttc atattttatg
     4201 cgagtccaag ttttttttca atagctattc gggcttctac tcggtcatca aaatcaataa
     4261 cctcgtcacc aatcacttga taatcttcat gaccttttcc agcaatcaga ataacatccc
     4321 ctgcttctgc ttcatttact gcaaaacgaa tcgcatctcg gcggttttcg tgaaccacat
     4381 aagaatcact atatggaaca ccttgaatca tatcttcaat aatcgcacgc ggattttcac
     4441 tccgcggatt atctgatgta aaaataggat ttgttgcata atctacagcg atttttgcca
     4501 tttgtggacg ttttccttta tcacggtccc cgccacaacc aacaacgaca aaaacgcgtt
     4561 tttctgcaaa ctcagcaatt gtttctaata catttagcaa gccgtctgga gtatgggcgt
     4621 aatcaactat aacagggaac tcttgccctg catgcacaag ttcaaaacgg cctttgacac
     4681 ccggtatgct ttccactgtt ttaattgctt tttccatagg gatatgtagc gcaaagctag
     4741 ttgcaatcgc agccaatacg ttataaacac taaagtttcc aatcattttt attttcaatg
     4801 taaaattacc aattggtgtc cgtaaatcaa atgtagaacc atggctagta attctgatat
     4861 tacttgcttt gaagtcagct tgttgtttta tcccaaaagt gattacatga gcagctgttg
     4921 ctttttgcat acgcacgctt tcctcgtcat ccgcgtttaa cacagcaatt tttgggttac
     4981 ttgtatggta gctgttgcct agttgcgcaa acaataagct ttttgcattg gcgtattctt
     5041 ccattgtatg atgataatcc aaatgatctt gagacaaatt cataaataca gcaacatcgt
     5101 aatctgaacc atatacgcga ccttgaacga gtgcatgcga ggatacttcc atcacagctg
     5161 tgctcactcc actaagtaac atgtcccgga atgtttcttg taaagtgagg ctatctggcg
     5221 ttgtattttt tgtttctaaa atttggtcgc caattttgcg atacatcgtg ccaatcaaac
     5281 ctgtttgctc gccattttcg cgcacgattt gttccactaa gtggctcacg gtcgtcttcc
     5341 catttgtccc agtaatccca acgagcttta atgcttgggt tggagatcca taaaagtaat
     5401 cggctaacat cgccatagca cgttttgaat ctcttacata aatgacagga atagatacat
     5461 ctaattgttt ttccgcgata attgctaccg ctcctagttc tactgcacgt gatgcaaatt
     5521 gatgtccatc caccaattct ccatctatac aaataaacaa cgtccctggt tttacttttc
     5581 tactatcttg ggcgatatgg ctaatttcaa ttgtttcact tgcctcgcca gtaaaaaccg
     5641 ggatagcttg cattagttca tttaacttca ttcttgccat ctcctcaaac ttattctttc
     5701 tgttattttt gctaaaacca aaaagaatcc ttttctatct tagcaaaaac aacaaactat
     5761 atctaccacg acaaaagaca cagattgcat ttaaagttag aagtatgcca ctttgtaaag
     5821 ctgacatact tctatcttcc tattattaat tgagcaaatc accgataccg gcattctctt
     5881 ggatgtcagt tgctttttta tttttttctg ctgtatcttg atcgtgattt tgattaaatg
     5941 cacttatttc ttctggtggc gcgagggtta ttttcatttt cgtttcacta ttaattacgc
     6001 tacccgcaga tacactttgg ctcttcacgt aaccatttcc actaaactca aacggaatac
     6061 cagttatttc agaaactttt agcgcatcgt ctttcgacca agttaccatg tcaggggcag
     6121 tcatgtcacc atctgtcatt aaaataactt tttgaccttg catgatttcg gcgttcgctt
     6181 gcggaagttg ttggacaatt tttttgccgt tgccgactat aattggttct aatcctttat
     6241 ctttcactat ttttttagct tcatctattg ttttccctgc taagactggt actttttcgg
     6301 aagctagttt ttctgcatcg cctggtttga tgttcatata ttgtagactg tttttcatta
     6361 caggattaaa aacttctgag actgcttctc cgccagtctg actgccggac aattgtggtt
     6421 gttgcattgt cacatagatt actaactccg gattatccgc tggtgccatt cctaagaaag
     6481 agaatatata attatctgct ccagtcatat acttaccagt tttcggatct ggaatttgtg
     6541 atgtaccggt tttaccagct acatcgtatc ccggaatcgc atataattta ccagtaccat
     6601 gttcgccgct aataacgttt tttaattcgt cacgcgtttt cttcgctgtt tctgcactaa
     6661 ttggttttcc agcaattttt gttttagtat cggtttcttc gcctgtgttt ggatctttga
     6721 cacttgaaac aacatatggc tctttcatcg tgccatcact tgcgatagcc gaagcagctt
     6781 gaatcatttg catcattgaa acggttgttc cttggccgaa aacggttgtt actttctcaa
     6841 ttggatagtt atataaaatt ttcccgcttg tttcattagg taaagcaata cctgttttct
     6901 taccaaaacc aaatttgtct aaatatgttt taaacgtatc ggtccccatt ttgtttaaaa
     6961 gtttggcaaa tgcaacgtta ctagagcgtt ctaccccttc acggtacgta atagaccccc
     7021 aaccattacc gttattatgg tcatgaattg cgatatctcc tactttgtat gaacccgatt
     7081 gataatattc attggcatta tatgtgttcg tatcaatagc agatgcaaga gaaataattt
     7141 tcattaccga acctggctca taagcatact caacaggtaa atcttgccaa atactggagc
     7201 tgtttccagt aatagtagat cgatcagcag ggttgaaaga aggacgttga ctaatagcca
     7261 aaatttcacc tgttttcgga tcagctacaa ctgccatcat gtttttaggt ttgtactttg
     7321 catccacagt tgtcatcgta tcttctaaaa aggtttgaat ttttttatct agcgttagcg
     7381 taatatcttt gccgtctttt gcttccgtta ctttgttttt agagttaggc aaaatatagc
     7441 ccattctgtc tgtactgtaa tcaattttgc cattcttgcc tgtcaaaata tcattgtaac
     7501 gggattcaat acccatttta ccttctaaaa ctgtagtatt cttttcttct tcttgttggg
     7561 cgaaaccaat taattgtgtt gcaaacgttc cattaggata gaaacgttct gattgacgag
     7621 taaattcaat acctggtaaa ttttctttgt caatttttgc ttttgtttct gtagaaatat
     7681 ttttaccggc agcgccgaat tcgacttggt attttccttt ttcattgagt ttatctagaa
     7741 tatcagattc atccatagga atatacttgg caagaattcg agccgttttt tcttcgtcaa
     7801 caacacgcat tggatttttc gttgttttgg aaagtttatc gctaactact gctgcaaccg
     7861 tgtaagaagc cgtatcctcc gctagcactt ctcctttacg atctaaaatg gagccacgct
     7921 ttgcttcgag aacactgctt ttcaaatgtt gtttagatgc ttttgctgca agaggtaccc
     7981 catttgcttc tcccgtaatt tgcaaataaa gaaaacggcc agaaaccaag agaaagagaa
     8041 ttgtgaaaaa gataaaaagc acaagagctc cccttctcat gttacctata cgccgtttca
     8101 ttgaccatct accactttca cattatcgcc atcaagtttt agcccttttt ctttagcgat
     8161 tttcaaaata cgttcatatc tccctaaatc ttttacttct acttttaagt cttcatttga
     8221 tttttgttgt tcgagaattt tggtttcttt tgtttgaatt tcttggttca ctgtgtaaat
     8281 ttgcgcttgt acgctaatta tacgaaaagc aacaactaaa acaatcgcaa gcgcaatcgt
     8341 gatgattact ttttctccaa gtgtcatttg accacgtttt aggatttgtt ttttaggttg
     8401 ttccgcttct ctatgtactc tatttggctc gagatttgat ttataggcga cattgctcac
     8461 attttttcaa ctcctgctat ttgataattt tttcaatcac gcgtaatttt gctgaacgcg
     8521 ctcggttatt ttgttccagt tcttcttcac ttggtacgat tggttttctt gtcgcaagtt
     8581 tgaaatctgg tttatattca tctggaatga caggaagacc tggtggtaaa tctggtcctt
     8641 ttgtcgcttc ttggaataag tgttttgtaa tgcggtcttc taaagaatga aacgtaatta
     8701 cgctaattct gccgcctggt tttaataaag ttaaggcttt ttcaagcgaa tcttctactg
     8761 caccgagttc gtcgttaacg gcaattcgga tggcttgaaa agtgcgtttc cctggatgtc
     8821 cgccttttct tcttgctgga gccgggatag ctgttttgat aatatctact agttcgcctg
     8881 ttgtttcaat tggctttact tcacgacgac gttcgatttc acgagcaatt tgtttcgaaa
     8941 atttttcttc gccatattgg aaaaagatac ggattaaatc ttgataagac cattcgttaa
     9001 caactatttt tgctgtcaat tcttgttctt gatccattcg catatccagt gcagcgtctt
     9061 ggtgataact aaaaccacgt tctctctcgt ctagttgtgg ggatgaaacg cctaaatcat
     9121 acaaaatccc atcaaccgct tcgataccac gctcatttaa tgcttctttc atatcgcgaa
     9181 aattggcttt aataaaagtc actttatcgc tataatctgc tagtttaatt tttgcattat
     9241 taattgctgt ttgatcttgg tcaaatgcaa ataaatgccc tttttcatta agcttattta
     9301 gtaaatactc ggagtgacct gcgccgccaa gtgttgcatc gacatagatt ccgtctggtt
     9361 ttacttcaag catatcgact gtttcatgta gtaatacggt ttcgtgttta aacatgcgtt
     9421 taccccctta aatatcaaag ccaatcatat tttcggctaa atcagcaaaa gattcttctg
     9481 cctcgttaaa gacatcatcc cactctgatt tactccaaat ttcaatacga ctagaaaccc
     9541 cgataataac tgtttctttt tccaaatccg catactgtag taagttggat ggaatattaa
     9601 tccggccttg tttgtctagt tcacattcag acgcaccgga aaagaagaaa cgtgtaaagg
     9661 aacgagcatc tttcttagta agtggtaagg tttggagctt ttcttcaagc tttttccatt
     9721 cctcttgtgg ataagcaaat aaacacttat caagtcctcg ggttataaca aaattatccc
     9781 ccaaaagctc acggaattta gctggcacaa ttaatctgcc ctttatatcg atgttgtgtt
     9841 gatattctcc catgaacatt agacttcacc cactttcata cataccactt taccacatct
     9901 ccccacttcg caccaccaaa aacctaaaaa agtgtaaaaa aaaatcatcc cagccaaagc
     9961 acagaatgat caatccctta tttaaagcca ttttcatcta attcaattct taaaaaacaa
    10021 tgtggggctt ggtggaggga ttccccactt tgaaccaaca tttattttac caacactttt
    10081 tcccaaccag attttagtgc cactgctgag aacactatac ttaaaacacc aagcgtaatc
    10141 gtaaaagctc ccatgccata tttaccaata aatggtgcaa atactaaact tacagaacca
    10201 atcattttac caatttgaaa aataatacca ttaaatgcca tgtaggcccc acgtctttca
    10261 tcatctacta ttgccgctaa gaccgtttga cgtgttggta catagagtaa ttcaccaatt
    10321 gagagcacca tcgtcgccaa aagtaaaact gttagattat ttgcgaaagc acaaactgca
    10381 aatccaagcg caaacaaagt aaaccctaca tacataatag gttgctgcgc ccttttagtc
    10441 acaaatctcg caattggtac ggtaaaaagt acaataaata aagtattcac agcggttaac
    10501 acactcacta tttgtactcc attgagagaa atatttccaa gtggccccaa atgtacaagt
    10561 agcgctttca catcttctgc taaacgaacc gaaatgtagt tgctccgttg aaactcgatc
    10621 gacatgatag caattccacc aatagtatat agaagaaaac gataatcatg taatacttgt
    10681 ccataatttt taagcattcc cattagtcca tatgaccctt tgtgcggcat ttctttttgc
    10741 tgcaacgtct cggaaattaa gcttatagta agccatgccg taacaaatga catgataaaa
    10801 agaacaacta atagaggaaa cagataatct acaaaaaacc aaccccccac cataattcca
    10861 atcatgatcg ataaattatt cgcccaataa ctgaccgaat acataaatga acggttctct
    10921 ggggtactta catcaattaa cattgcttct ccagctggat taatcaatcc ctgagctacc
    10981 ccaataataa gtaacatgac aaaagttatc cacggagaat gaaacatggg ggaattgcat
    11041 agtaccatcc cgagaaacgc aaacacttta agcagttctc cggtgaccat taatttttta
    11101 cgtccaataa tatccgctag atgtccaccg tacatgccag caagaaattg tgctaataca
    11161 ttaatcatca agagaaagcc ggcgacacta ctattaattt cccttgaaaa ataaattgcc
    11221 ataaaaggaa aaatcatcga accaattact ttactcaaaa actgaattaa tatccgcgca
    11281 cgaatatttg ggtgcaactc tctaaacatg acatcccctc catttgcaat ttttctgact
    11341 tctctgctag tataaaaggg atacataaat ttaaaaaggg tattcatttt catatattgt
    11401 ccccttttag gacggagctg ttgttatgga taaagattat ttcactatgc gcgcgcattt
    11461 atacaatata actaccgatt tagaagtgtc tttcaaatta aatgatgtgg caaatatttg
    11521 gttttgtacg actaaaaatg ccaagcgtaa actgcaacaa tatcaggcga aaaaaatgct
    11581 tacttatctt cctgggctag gccgaggaaa tgtttcaagg attatttttc ctaaacagtt
    11641 agaactagag gttcttgacg ttttggaaca aagtttggct gaagatgcat ttagcgatat
    11701 tttatttttg ctacaattgc ctatccctaa aagctggttt acaagtatct ctacggaaat
    11761 tcaacaaata ttcggtttgc aagtaacaga aaatcaacaa gaagttctgc gctccatcgt
    11821 tcgtcgcaag ctcactacct tagacccact tcaaacttct gtatctatgg aagcatttct
    11881 catcacccaa attagtgact ctctcgtcaa atatgatgaa gagaaaaaga aaattatacc
    11941 tcatattgca caccactgga aagtatctga tgattttacg gaatggacat tttatttacg
    12001 aaaaagtgtt ttatttcatc acggacgcat gctggatagc gaggatgtaa agcacacctt
    12061 gatgcgttct atgcaaacag aatcggtttc tttctggcaa ttacaggata ttcaatccat
    12121 ccactgccct aataaattca cgatctccat tcagctaaaa aaaacggacc cttttttcat
    12181 tcgttattta tgcacagcga atatggctat tttaccgcga gatattattt ttgatgaata
    12241 tacatggatt tctactggtc cctttcgagt tgcagagcgg aatgacgagc gcttggtctt
    12301 agaagccttt gatggatatt ttctcgagag accgattctt gatcgagtag aattttggac
    12361 cgcccaaact ggaaacaatt taaaaaccat tccaatgcaa ttcacttccg ttgattacga
    12421 ggaaaatctc gcctatgtag aacgtcgtaa acctggtgtt ggtgttaatt ttatttgttt
    12481 caatacgcac cgaaatggcg ccccacaaca cccggcattt cgagaggcaa tctaccatct
    12541 cattgattgt caaaaagcaa gtgaacaaca tttcgaaaac tatgggacag tcgcatctaa
    12601 ctattatcct gaaaaatccc ttccacctaa aaaacatcct gagaaaatcg ctactttatt
    12661 aaaaaaagca aactaccaag gcgaaaaagt tatttttgga actacccaac atcctaccgc
    12721 tgtaaaagag tcaaaatgga ttcaagagca agctgtcgaa ttcggaatta acttagaaag
    12781 aaaaatcatt acgcatcagg aagcttccta ttccaacgtt ccagcaaaag aaaccgactt
    12841 catgatgatg ggagaaatcc cagcctcaga tgacgaaatg gcttatttag attttttaaa
    12901 taacccctat ctgttgccac aacaactttt caatcaagca attatcaaag aacttacgga
    12961 aaagctcgat gcatttaaaa cagaaaaaga cgcctccaaa agagacgcct tacaaacgag
    13021 cattgatagc tggttaacag aaaatcatta tttaatttac ttgcatcatc cggaaaaaag
    13081 tcaatcgctt cattcaatga taaaaggaat tgcagaaaat ccttatggtt attttgattt
    13141 aagcaaagtg tggattgaaa taagcccgct taaaacatta aaaccagact atagacaatc
    13201 ccatagaggt aaagcgccac atacaataac gcaaaaatga agaagcatag gcgccagtaa
    13261 ccacgtagga ttttgcggaa ctgaatctcg ccttctttct ttgcagccgt gacaacaatt
    13321 acaatacc
//
LOCUS       DASEAA010000066        13309 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.066, whole genome shotgun sequence.
ACCESSION   DASEAA010000066 DASEAA010000000
VERSION     DASEAA010000066.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13309)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13309)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13309
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.066"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(261..707)
                     /gene="perR"
                     /locus_tag="U0342_001576"
     CDS             complement(261..707)
                     /gene="perR"
                     /locus_tag="U0342_001576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxide-responsive transcriptional repressor
                     PerR"
                     /protein_id="HEM2422922.1"
                     /translation="MAVSNATLKEAVDVLKKTGVRITPQRHAILEFLINSHTHPTADD
                     IYRALEGNFPNMSVATVYNNLRVFRDAGLIKELSYGDASSRFDFSTSNHYHAICNVCG
                     KIVDFQYPGLDEVEHFAAHMTGYEIDNHRLEVYGICPACKEKQSNN"
     gene            complement(790..1731)
                     /locus_tag="U0342_001577"
     CDS             complement(790..1731)
                     /locus_tag="U0342_001577"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465209.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dehydrogenase"
                     /protein_id="HEM2422923.1"
                     /translation="MNILFTLDVPEHLQTLQAEKFPEDTFYYESNDHFANLAEIDIIV
                     TYGSNITEAKIKQASNLKFIMVFSAGVDSLPREIIQERKIKVANVRGIHAVPMGEYAL
                     SFMLSHVKKATFFYQMQKEKNWASEEPITELAGKTLVVAGTGAIGAKVAEFAQAFDME
                     IIGVNTTGHPVKPFSKTYAMSDIEKVAPLADFFVSVLPHTDKTTAIYSLSFFRKMKDN
                     AVFINIGRGSAVELKVLEQASKEQLINHFYLDVVPEEPLSEDNYLWEASNVTITPHVS
                     GHSDKYLERSFKIWFENIKHLKENTKLRNEIDLNKGY"
     gene            1876..3174
                     /locus_tag="U0342_001578"
     CDS             1876..3174
                     /locus_tag="U0342_001578"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465210.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEM2422924.1"
                     /translation="MDHSMSKKLHDEALLHIVGGVNSPSRSNKGVGGGIPVTMERASG
                     AYFYDVDGNKYIDYLAAFGPIITGHAHPHITEAITKAAQNGVLYGTPTKHEITFAKML
                     KEAIPSLEKVRFTNSGTEAVMTTIRVARAYTGRDKIIKFAGCYHGHFDLVLVEAGSGP
                     STLGIPDSAGVTKSTAEEVITVPFNDLASFKEALAVWSDQVAAVLVEPIVGNFGMVAP
                     EDGFLEAVNELAHANGSLVIYDEVITAFRFMYGGAQNYLGVIPDLTAMGKIIGGGLPI
                     GAYGGRIDIMEKVAPLGPAYQAGTHAGNPASILSGIACLEVLQEEGLYERFEKYGSML
                     KDGIEKAALKHGIAVTVNQIVGALTVYFTEDPVTNYAEAGATNGELFGRFFKGMLEEG
                     INLAPSKYEAWFITSAHSEADILETIQAVDTVFGKMVQDN"
     gene            3280..4368
                     /locus_tag="U0342_001579"
     CDS             3280..4368
                     /locus_tag="U0342_001579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465211.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM2422925.1"
                     /translation="MKFGARILKTGIAITLALFIAQLCNSPSPSLAGISAVFAIQPSI
                     YRSYRTILERAQGNVIGAIIAIIFGLYIGNDFILIGVASIICVALLMQFRLENTIGLA
                     VVTLIIVMDSPGNDFLEIALIRFGTIMLGLLAAFIVNLFFLPPKYEVSLFQLIYNTNS
                     EIVRWIKLNLRHAADFPLLKKDMEWMQKQLNQTRNLYGLYREERTFLKKNAISKGRKI
                     AVYRQMLLCSQKGFELLKIQHRYENDYLQLPPDKQELIRQHIDYLTDKHEQLLLTYID
                     KVSIDLEYVESHLAQDPQDLMQLFLREMRETEKDEYEDMMDKYHLMRIIASVFAYQET
                     IDYLEKLIHSFKLRHTKENQIDINVNEE"
     gene            complement(4410..4937)
                     /locus_tag="U0342_001580"
     CDS             complement(4410..4937)
                     /locus_tag="U0342_001580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF402 domain-containing protein"
                     /protein_id="HEM2422926.1"
                     /translation="MYLPKEKEIIQIKSYKHNGKLHRTWKKTVVLKSTENIIIGGNDH
                     TLVVEADGRKWVTREPSICYFHSDYWFNVISMIREDGIYHYCNLGTPFAVDEQALKYI
                     DYDLDIKVFPDGRFHLLDEGEYEQHRRQMKYPDSIDRILRHNVDVLSHWILDKKGPFS
                     PDYIDIWYEKYKEYR"
     gene            complement(5092..5838)
                     /gene="fabL"
                     /locus_tag="U0342_001581"
     CDS             complement(5092..5838)
                     /gene="fabL"
                     /locus_tag="U0342_001581"
                     /EC_number="1.3.1.104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465213.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-[acyl-carrier-protein] reductase FabL"
                     /protein_id="HEM2422927.1"
                     /translation="MNRVALVTGSSRGLGREIAIALANEGYDIAVNFSRNRKKAEEVQ
                     QEIEQLGRKCVIFKANVGDVEKIRDLFKAVDEEFGRLDIFINNAASGVLRPLMELEES
                     HWDWTMNINAKALLFAGQEAAKLMQRHQSGKIISLSSIGSIRYLENYTTVGVSKAAVE
                     SLTRYLAVELAPFGIAVNAVSGGLIETDALNHFPNREELLKDAISKTPAGRMIEPNDL
                     VNAVLFLASEKADMIRGQTILVDGGRTLLV"
     gene            complement(5842..6939)
                     /gene="mutY"
                     /locus_tag="U0342_001582"
     CDS             complement(5842..6939)
                     /gene="mutY"
                     /locus_tag="U0342_001582"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465214.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="A/G-specific adenine glycosylase"
                     /protein_id="HEM2422928.1"
                     /translation="MRKMKRLTWDETKITAFQEALVSWYEANKRVLPWRENTDPYRIW
                     VSEIMLQQTKVDTVIPYFNRFMTQFPTMEDFVQADEADILKAWEGLGYYSRVRNLQTA
                     MKQVMADFSGKVPTDLTTILSLKGVGPYTAGAILSIAYNQAEPAVDGNVMRVIARVLE
                     ISEDIMKVSTRKIFEEVLYQLIDKENPAAFNQGLMEIGALVCTPTKPMCMLCPLQPFC
                     EAHKNGVETNYPVKIKKVKTKTKELLSIIVISEDGKIAIEKRPENGLLANMWQFPTIE
                     ISKKENEEVAKLQFLHNYGLDVLLEDEPIAHIKHVFSHLVWKMDIRVAKLQSAIPNEN
                     WYFATEEEMKRLAFPVPYQKMWQAWKDFKGE"
     gene            7139..8119
                     /locus_tag="U0342_001583"
     CDS             7139..8119
                     /locus_tag="U0342_001583"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465215.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEM2422929.1"
                     /translation="MDTGTHVVMGIALGALATVDPVVAGSSQAAIGIMTATIIGSQIP
                     DIDTVLKLKNNADYIRNHRGITHSLPMLAIWPLLISSVLYLLFPAATFIHLLLWTFIA
                     VGLHIFVDIFNAYGTQAVRPFKETWVAFGFINTFDWFIFGSHVVAIAAWLLGSPVLAT
                     FVTLYVILALYYVARFVTQRMIKHAVQNLIPDSEEIIIASTIHFFQWRVAVTTKDHYY
                     VGRAFKRNISIYEKFDRLPVPDNEIIRSAKKDKNLAAFISFSKVYNWRIEEKLDGTYV
                     TFTDLRYRSNGHYPFVAVVKLDDDLKIVSSYTGWIFSTEKLYKKLAPVSI"
     gene            complement(8148..8609)
                     /locus_tag="U0342_001584"
     CDS             complement(8148..8609)
                     /locus_tag="U0342_001584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465216.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dUTP diphosphatase"
                     /protein_id="HEM2422930.1"
                     /translation="MKVRGFEVVNEASRKFPEQTISLPIRGDKGSAGYDFFSNETVTI
                     LPGEKHIFWTDIKSYMQEEEVLNIYVRSSIGIKKGLLLCNGTGIIDSSYYSNPGNDGN
                     IGIAIKNFSNEAVAIEAGERVAQGVFQKYLVADTDIVANESRVGGVGSTGR"
     gene            complement(8621..8854)
                     /locus_tag="U0342_001585"
     CDS             complement(8621..8854)
                     /locus_tag="U0342_001585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465217.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YfhJ family protein"
                     /protein_id="HEM2422931.1"
                     /translation="MYTYLDELTAELMTKNPHLDKEQALWWIEMLWSDFESSYAKAGY
                     PYRGPEYAADYVRQQIERHGSFLHQVERKDPNK"
     gene            complement(8856..9665)
                     /gene="recX"
                     /locus_tag="U0342_001586"
     CDS             complement(8856..9665)
                     /gene="recX"
                     /locus_tag="U0342_001586"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination regulator RecX"
                     /protein_id="HEM2422932.1"
                     /translation="MKITSISVQQKNKERYNIFIDEKYNFSVDEEVLARYQLMKGKVL
                     TEAEIEEIKQADMVRKGLNKAINFLSHRVRSEKEIRDYLRKQEMEAFAIDEILKKLAD
                     MDYINDLEFAELYTKTQIKTTLKGPRTIERELVEKGLTREIITQVIEEYSDEAQLENA
                     TKQAIKIMKRNNKSAKKMLQQKIITDLIQKGYTSELAKVAATEATSELDVADEAEILQ
                     KQIEKTMRKNKRYKPSIAKQKTITSLMQKGFSYDTIQSYLTENEISFEEEE"
     gene            9763..10665
                     /locus_tag="U0342_001587"
     CDS             9763..10665
                     /locus_tag="U0342_001587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465219.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR01777 family oxidoreductase"
                     /protein_id="HEM2422933.1"
                     /translation="MHILLTGATGFIGDHLVHELEKSDHELYILTRQKLKNRANVHYI
                     EWLNEDKLPNLEDLPVDVCINFAGAGLMDEKWTYDRKKVIVNSRIEATSALLSIVKKM
                     KSKPKLWINASAIGAYTSSKSTIYLDTEENNYADNFLGKTVYEWEKTASAASDLGIRV
                     VYARFGLVLGTDGGSFPVFEKLFQTYTGGRFGNGRQWYSWIHVDDVVAAILFIFDHEQ
                     INGVVNFTAPHPVQEKKFAERLGKKMHKPYKTPVPKKIIKFILGERAMTILDSQRAYP
                     EKLMSNHFEFRFETLQEALDDLLD"
     gene            complement(10686..13283)
                     /gene="mprF"
                     /locus_tag="U0342_001588"
     CDS             complement(10686..13283)
                     /gene="mprF"
                     /locus_tag="U0342_001588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional lysylphosphatidylglycerol
                     flippase/synthetase MprF"
                     /protein_id="HEM2422934.1"
                     /translation="MKEKLMQAYAWFQKNSTVVKIVFITFVMAFVIFEIINIATGIDY
                     PSLKENLTSQSPEQIFIMFIVGLIAVTPMLLYDYVIVKLLPGKFSPSHVIASGWITNT
                     FTNIGGFGGVLGASLRASFYGKNASHKEILLAISKIALFLVSGLSIYCLVSLATLLIP
                     GFANHFVNYWPWLLAGGLYFPILFTITKWKSKSLFVDLPIKRELTLIIASLLEWGFAF
                     GCFAIIGTLMGEPVDIFKVFPLFVIASVIGIASMVPGGVGTFDVVMILGLSQLGVSQE
                     LALAWMLFYRIFYYIIPFVVGLLFFVQKAGKKVNDFLEGLPLLFLQKVAHRFLVIFVY
                     GSGLLLILSSAVPNAIYHVPFLYKIMPFNFLFTSQITIVAFGFLLLGLARGIECKTKK
                     AYIITVIVLGCAIFNTLARVFSMKQAIFLGIVLLCLFLARNEFYREKLVYTWSKVIMD
                     SIIFIVCLAGYIVIGIYNSPNIKHSKEIPDYLRIASEHLWLVGFVGVFIAVVSLVIIY
                     IYLSTTKEKLGSPFEAVKVREHLAKWGGNEVSHTMFLRDKLLFWAANGEVLFSYRILA
                     DKMVIMGEPTGNMDKMEAAIEEVMMNADRFGYRPVFYEVRGTMIPYLHDHGFDFIKLG
                     EEGFVDVQNFTMSGKKKKGERALMNKLEREGYTFEIIEPPFKHETWTTLRAVSDEWLD
                     GREEKGFSLGFFDTYYLEQAPIAIAKNGEGTVVGFASMMPSYTEEMTSIDLMRYSKEA
                     PSGIMDFLFINLFEKAKEDGFQTFNAGMAPLANVGESKYAFLGERLAGLVYRYSQGFY
                     GFKGLRNFKSKYVTEWEQKFVAFRKRSSIAFTMLQLMILVGKKRPLANSQVVLDFPLE
                     EETKKPDSE"
BASE COUNT         3984 a         2539 c         2379 g         4407 t
ORIGIN      
        1 gtcgctttca tgcttgttat gcgaatgttt tcgtttgttt tttgcgactt ttaaatcata
       61 tcatttcagc aactatctgt caacaacttt ttgaatttat tttatgaata aaattcattt
      121 aaatcgctgc tatcgtagcg ccgaaaacta atatatcaag ttttgagata tatgtcaacc
      181 gaattatgca taaaattaaa taaaaatgaa aaaaattgca aaaaacacaa aaaaacacct
      241 agctaggcta agtgttttga ttaattattt gattgttttt ctttacaggc tggacatata
      301 ccatatactt ccagtctgtg attatctatt tcatatccgg tcatatgtgc tgcgaaatgt
      361 tctacttcat ctaaacctgg atattgaaaa tcaactattt ttccacacac attacaaatt
      421 gcgtggtaat gattagatgt agaaaaatca aatcgactag atgcatcgcc ataggataat
      481 tctttaatta gaccagcatc ccggaaaacg cgtaaattat tatatacagt tgctacgctc
      541 atgttaggga agtttccttc taaagcccga taaatatcat ccgcggttgg gtgtgtatgt
      601 gagttaatta agaattcaag tatagcatga cgctgaggag tgattcttac tcctgttttc
      661 tttaagacat ctactgcctc ttttagagtt gcattagaca ccgccatgca ctcccttcca
      721 aaaataatta ttatctttat aataccggaa ataacgctta actgtcaata gaatggcaga
      781 atttatagct taataacctt tattcaaatc aatttcattc cgtaatttgg tattttcttt
      841 tagatgtttg atattttcaa accaaatctt aaagctacgt tctaaatatt tatccgaatg
      901 tccagataca tgaggtgtga tagtaacgtt acttgcttcc cataaataat tgtcttcgga
      961 aagtggctct tcaggtacaa catctaaata aaaatggttt attaattgct cttttgatgc
     1021 ttgttctaaa acctttaatt caactgcgct acctcttcct atattgataa aaactgcatt
     1081 atctttcatt ttccggaaaa atgataagga ataaatagct gttgttttgt ctgtatgagg
     1141 taaaacacta acaaaaaaat ctgctaatgg agccactttt tcgatatcgg acatggcata
     1201 tgttttacta aagggcttca caggatgtcc agttgtatta acacctataa tttccatatc
     1261 aaatgcttga gcgaactcgg ccacttttgc tccaatggct ccagttccag ctactaccaa
     1321 agtttttcca gctaactctg ttattggttc ttcacttgcc caattttttt ctttttgcat
     1381 ttgatagaag aaagtggctt tttttacgtg tgataacatg aaagatagcg cgtattctcc
     1441 cattggcaca gcgtggattc cgcgtacatt agcaacttta atttttcttt cttgaattat
     1501 ttccctcggc aaactatcta ctcccgcaga aaaaaccatg ataaatttta aattgcttgc
     1561 ttgtttaatt ttggcttcag taatgttaga tccgtatgtg acgatgatat ctatctccgc
     1621 taaattggca aaatgatcat tgctctcata ataaaaagta tcctctggaa atttctctgc
     1681 ttgcaaagtc tgtaaatgtt ctgggacatc taatgtaaat aaaatgttca ttttgcgcca
     1741 cacttcctct ctttagctat atactaattt tatgcttttt ttcatttaac ggcaattaaa
     1801 ttgttttttc gattgcggca tcttattttt tcgcatagaa tataagaggt attaaaattt
     1861 tgaggagatg acgaaatgga tcattcaatg tcaaaaaaat tgcatgatga agcactttta
     1921 catatagttg gcggggttaa tagcccatct aggtcaaata aaggggttgg cggcggaatt
     1981 cctgtaacaa tggaacgggc tagcggcgct tatttttatg atgtggatgg gaataagtat
     2041 attgactact tagctgcgtt tggaccaatc attactggac atgcacatcc tcatattaca
     2101 gaagcaatta caaaagctgc gcaaaatggt gttttgtacg gaacacctac taaacacgaa
     2161 atcacttttg cgaaaatgtt aaaagaggcc attccttcac ttgagaaggt ccgttttaca
     2221 aattccggga cggaagctgt tatgacaacg attcgtgtcg ctcgcgctta tacaggcaga
     2281 gataaaatca ttaaattcgc tgggtgttac cacggccact ttgatttagt actcgtggaa
     2341 gctggttctg gaccttctac gcttggcatt ccagactccg ctggggtaac gaaatcaacc
     2401 gcagaagaag ttattactgt accttttaat gaccttgcat cgtttaaaga ggcattagct
     2461 gtttggagcg atcaagttgc tgctgtttta gtagaaccta ttgttgggaa ttttggaatg
     2521 gttgcgccag aagatggttt tttagaagct gttaatgaac tcgcacatgc caatggttct
     2581 ttagtaattt atgatgaagt tattacggct ttccgtttta tgtacggcgg cgcgcagaac
     2641 tatttaggtg ttattccaga tttgactgct atgggtaaaa ttattggtgg cgggcttccg
     2701 attggtgctt acggtggtcg gattgatatc atggaaaaag tagcaccact cggaccggct
     2761 tatcaggctg ggacgcatgc ggggaatccg gcatctattc tttcaggaat tgcttgtctc
     2821 gaagttttac aagaagaagg actgtatgag cgctttgaaa aatatggctc gatgctgaaa
     2881 gatggcattg aaaaagccgc gctaaaacac ggcattgctg ttacggttaa ccaaattgtc
     2941 ggtgctctaa ctgtttactt tacggaagat cctgtgacta attatgctga ggctggcgct
     3001 acaaatggcg agttattcgg tcgtttcttt aaaggaatgc tagaggaagg cattaatttg
     3061 gcgccttcta aatatgaagc atggttcatc acttccgcac actcggaagc tgatatttta
     3121 gaaacaatcc aagcagttga tactgttttt ggaaaaatgg ttcaagataa ctaggtaata
     3181 ttactttata aactggtgag aaacgttata atagaagaag aatgagcggg aaaacttaaa
     3241 aatcccgctc aaatagtcta tagaaaggaa taaccttcca tgaaattcgg agctagaatt
     3301 ttgaaaactg gtattgcaat cacattggcg ctttttatcg ctcaactttg caattcacct
     3361 tctccatctc tggcaggcat ttccgccgtt tttgctatcc aaccttctat ttataggtcc
     3421 tatcgaacta ttttagaacg ggcgcaaggg aacgtaattg gagccatcat tgcaattatt
     3481 tttggacttt atattggtaa tgattttatt ttaattggtg tcgcttcgat tatctgtgtt
     3541 gctttattaa tgcaattccg cttggagaat acgattggcc ttgcagtcgt gacactcatt
     3601 attgtaatgg attctcctgg taatgacttt ttagaaatcg cacttattcg ttttgggaca
     3661 attatgttag gtttacttgc ggcatttatt gtcaatctat tctttttacc accgaaatat
     3721 gaagtttcat tgtttcagtt aatttataat acgaatagtg aaatcgttcg ttggattaaa
     3781 ttaaacttgc gtcatgctgc ggacttccct cttctaaaaa aagatatgga gtggatgcaa
     3841 aaacagttaa atcaaacgcg taacttatat ggtttataca gagaagagcg tactttttta
     3901 aagaaaaatg ccatttcaaa agggcggaaa attgctgtat ataggcaaat gttgctttgt
     3961 tctcaaaaag gttttgagct tttaaaaatc caacatcgct atgaaaatga ttatttgcaa
     4021 ctgcctccag ataagcaaga gttaatcaga caacatatcg attacttaac ggataaacat
     4081 gaacaacttt tactgacata catcgataaa gtttcgattg atcttgaata tgtagagtcg
     4141 catttagcac aggatcccca agatttgatg cagcttttct tgcgtgagat gagggaaaca
     4201 gaaaaagatg agtatgagga tatgatggat aaataccatt taatgcgtat tattgcctct
     4261 gtttttgctt accaagagac aatcgactat ttagaaaaat taattcatag ttttaaactc
     4321 agacacacga aagaaaacca aattgatatt aatgtcaatg aagaataaac aaaaaacgag
     4381 cttggagata gactccaaag ctcgtttttt taacggtatt ctttgtactt ttcataccaa
     4441 atgtcaatgt agtcagggga aaacggacct tttttgtcca aaatccagtg gcttaacaca
     4501 tccacattat gtcgaagtat ccggtcaatt gagtctgggt acttcatttg gcgacggtgt
     4561 tgttcgtatt cgccctcatc aagcaaatga aaccttccat ctgggaaaac cttaatatcg
     4621 aggtcatagt caatgtactt aagcgcttgt tcatctactg caaatggtgt ccctagattg
     4681 cagtaatgat aaatgccgtc ttctctaatc atggaaatta cattaaacca gtaatcacta
     4741 tgaaaatagc agatagatgg ttcgcgcgtt acccatttac gtccgtctgc ttccacaact
     4801 aatgtgtggt cgtttccgcc gataataata ttctccgtag atttaagcac cactgtcttt
     4861 ttccaagtac gatgaagttt tccgttatgt ttgtagctct tgatttgtat tatttctttc
     4921 tctttgggta agtacatcct ttatcctact ttcctcatgt actatcaaaa tcattattat
     4981 tataacataa ggcaagactg caaaaaaaca atatcgtgct gaaacggaat attttcctca
     5041 aaaaagaact ttttttacat aaaatagcta atttttacct attttgtttt actatactaa
     5101 aagtgttctg ccgccatcta ctaaaatagt ttgcccgcga atcatatctg ctttttcgct
     5161 cgcaaggaat aatacggcat ttactaagtc attgggctca atcattcgac ccgctggtgt
     5221 tttacttata gcatctttta acaattcttc acgattggga aagtgattta gtgcgtctgt
     5281 ttcaattaag ccgccagaaa cagcattaac tgcaatgcca aaaggtgcaa gttcaactgc
     5341 taaataccga gtaagtgatt ctaccgccgc ttttgaaacg ccaactgttg tgtaattttc
     5401 taaataacga atcgagccaa tcgagcttaa gctgatgatt ttcccgcttt gatggcgttg
     5461 cattaattta gctgcttctt gacctgcaaa caacagcgct tttgcgttaa tattcattgt
     5521 ccaatcccaa tgtgattcct ctaactccat caatggtcga aggacaccac ttgctgcatt
     5581 gttaataaaa atatctaatc ggccgaattc ctcatctaca gctttaaata agtctctaat
     5641 tttttccacg tcaccaacat ttgctttaaa aataacgcat tttcttccta attgttcaat
     5701 ttcttgttgt acttcttctg cttttttgcg atttctggaa aaattaacag cgatatcata
     5761 gccttcattt gcaagtgcga tggctatttc tcttccaagt cctctactac ttcctgttac
     5821 taatgccact ctattcattt gttattcccc cttaaaatct ttccacgctt gccacatttt
     5881 ttgatatggt actggaaaag caagtcgctt catttcttct tctgttgcaa aataccaatt
     5941 ttcatttgga attgctgact gaagttttgc cacacgaatg tccattttcc atactaaatg
     6001 agaaaaaacg tgtttgatat gcgcaattgg ttcgtcttct agtaaaacgt ctaagccata
     6061 attatgtaaa aattgtagtt tagctacttc ctcattttct tttttcgaaa tttcaatagt
     6121 aggaaattgc cacatatttg caagcaaacc attttctggt cgtttctcta tggcaatttt
     6181 tccgtcctct gaaataacaa tgatgcttaa tagttctttg gttttcgttt tcactttttt
     6241 tatttttact ggataattcg tttcaacgcc atttttatgc gcttcgcaaa acggttggag
     6301 cggacaaagc atacacattg gttttgttgg tgtacaaaca agcgcaccaa tttccattaa
     6361 accttggttg aaagcggctg gattttcttt gtcaattagt tgatataaca cttcttcaaa
     6421 aattttccgg gtggacactt tcatgatgtc ttcactaatt tctaaaacgc gcgcgatgac
     6481 acgcataaca ttgccatcca ctgctggttc agcttggttg taggcaatac tcaagatagc
     6541 tcccgctgta tatggaccta cacctttaag cgataaaata gtggttaagt cggtaggaac
     6601 ttttccagaa aaatcggcca tcacttgctt catggctgtt tggaggtttc tgacacgaga
     6661 ataatagcct aagccttccc acgcttttaa aatatccgct tcatccgctt ggacaaaatc
     6721 ttccatcgtc ggaaattgag tcataaagcg attaaaataa ggaattactg tgtcgacttt
     6781 tgtttgttga agcatgattt ctgagaccca aattctgtaa ggatcggtat tttcgcgcca
     6841 cggtaagacg cgcttattcg cttcatacca ggaaacgagt gcttcttgaa aagcagttat
     6901 ctttgtttca tcccaagtta gtctcttcat ttttctcatt ttcccctcgt aattctaata
     6961 gatttctaat gtgtgttgct ccggatgtgt agtataatgt agacagggaa taaaatagta
     7021 tacccattct taagccgatt tctattatac cgaatgctgg cttgattgaa tagtgttgtg
     7081 ctcttacagg cagcaccact tgtatttttt aagaccgatt ttagaggagg caaagtcatt
     7141 ggatactggc acacatgtag taatgggaat tgcactcgga gcgttagcaa ccgtagaccc
     7201 ggtagttgcc ggaagttctc aagctgccat tggtattatg acagcaacaa ttattggttc
     7261 acaaattcca gatattgaca ctgtactaaa attaaaaaac aacgctgatt atattagaaa
     7321 tcaccgagga ataacacatt ccttgccgat gcttgcaatt tggccattac ttatttcatc
     7381 tgttttgtat ttacttttcc cagcagcaac atttattcat ttactgttat ggacgtttat
     7441 cgcggtggga ttacacattt ttgtagatat ttttaatgct tacgggacac aagcagtcag
     7501 accgtttaaa gaaacatggg tcgcatttgg atttatcaat acctttgatt ggttcatttt
     7561 cggttctcat gttgtggcta ttgcggcttg gttgttaggt tctcctgtat tagctacatt
     7621 tgtaacactc tacgtcattt tagcacttta ttatgtggcg agatttgtta cacaacgaat
     7681 gattaaacat gcggttcaaa acttaattcc agattcagaa gaaatcatta ttgcttccac
     7741 catccacttc ttccagtggc gtgtggcggt aacaaccaaa gatcattact atgtaggtcg
     7801 agctttcaaa cgcaacatct ctatctacga aaaatttgac cgattacctg ttcctgataa
     7861 tgaaatcatc cgttctgcga aaaaagataa aaatctagct gcttttatct cattctccaa
     7921 agtttacaac tggcgcattg aggaaaagct agatgggact tatgtaacat ttaccgattt
     7981 acgttatcgt agcaatggac attatccatt tgtagcagtg gtgaaattag atgatgattt
     8041 aaaaattgtt tcatcttaca ctggttggat tttctccaca gaaaaattat acaaaaaact
     8101 agcacctgtt agtatttaaa aaaagacccg gaatcccggg tcttttttta tctgcctgta
     8161 cttcctaccc caccaacacg ggattcgttt gcgacaatat ctgtatctgc aactaagtat
     8221 ttttgaaata cgccttgagc aacacgttcc cccgcttcaa tagctactgc ttcattggag
     8281 aagtttttaa tggcaatccc aatattgcca tcattacctg gattactata ataagaagaa
     8341 tcaataattc ctgtaccgtt acatagaagt aaacctttct ttataccaat ggaagaacgg
     8401 acatagatat tcaaaacctc ctcttcctgc atataacttt taatatctgt ccaaaaaatg
     8461 tgtttttctc ctggtaagat ggttactgtt tcattagaga agaaatcata gccggccgaa
     8521 cctttgtccc cgcgtattgg taaagatatt gtttgttccg gaaattttct gcttgcttca
     8581 tttactactt caaatcctct tactttcaat tcgttcactc ctatttgttt gggtcttttc
     8641 gttctacttg gtgtaaaaaa ctgccgtggc gctcgatttg ctgacggaca taatctgccg
     8701 cgtactctgg accacgatac gggtaacctg ctttagcata tgaactttca aaatctgacc
     8761 aaagcatttc aatccaccac aaggcttgct ctttatctaa atgcggattt ttagtcatta
     8821 attccgctgt tagttcatct aaatacgtat acaattcact cttcctcctc gaaactgatt
     8881 tcattttcag ttaggtatga ttgaattgta tcataagaaa aacctttctg cattagcgat
     8941 gtgattgttt tttgtttggc aatgcttggt ttgtagcgtt tatttttacg cattgttttt
     9001 tcgatttgct tttgtaaaat ttctgcttcg tccgccacat ccaattcgct cgttgcttca
     9061 gtagcggcta ctttggctag ttcgctcgta tagccttttt ggattaaatc cgtgataatt
     9121 ttttgttgaa gcattttttt ggcgcttttg ttatttcgct tcataatttt tattgcttgt
     9181 ttggtggcat tttctagctg agcttcatcc gaatattctt cgataacttg agtaattatt
     9241 tctctagtta gtcctttttc gactagttcg cgttcaatgg tccgcggacc ttttagggtt
     9301 gttttgattt gcgttttcgt atacagttcc gcaaattcga gatcattaat ataatccatg
     9361 tcggctaatt tttttaaaat ctcgtcaatt gcaaaagctt ccatttcttg ctttcttaaa
     9421 taatcgcgaa tttctttttc cgagcgaaca cggtgggata agaagttgat ggctttattt
     9481 agcccttttc gaaccatatc agcttgctta atttcttcta tttcggcctc ggttagaact
     9541 ttacctttca tcagctggta gcgggctaaa acctcttcgt ctacgctaaa gttgtatttt
     9601 tcatcaataa aaatgttgta gcgttctttg tttttctgct ggacacttat ggacgtgatt
     9661 ttcataatcc gcctccttct cctatctatc ataccgcaaa aattggtttt aatactacta
     9721 aaaagggaat aaactagtta ggacaatgaa gaggtgataa aattgcatat cttacttaca
     9781 ggcgcaacag gttttattgg tgatcattta gtgcatgaat tagaaaaatc tgatcacgag
     9841 ctttatattt taacaagaca aaagctaaaa aaccgcgcaa atgtacacta tattgaatgg
     9901 ttaaatgaag ataaattgcc gaatttagaa gatttaccag tggatgtttg tattaatttt
     9961 gctggtgctg gtttgatgga tgaaaaatgg acttacgata gaaagaaagt gattgtaaat
    10021 agccgcatcg aagctacttc agcactctta tcgattgtga aaaaaatgaa atcaaaacca
    10081 aaattgtgga ttaatgcaag tgcaattgga gcctacactt cctccaagtc aacgatttat
    10141 ctcgatacag aagaaaataa ttacgcagat aacttcttag gaaaaacagt ctatgaatgg
    10201 gaaaaaacag cgagtgcggc aagtgatttg ggtattcgtg ttgtttatgc tcgctttggt
    10261 cttgtacttg ggactgatgg tggctcgttc cctgttttcg aaaaattatt ccaaacttat
    10321 acagggggac gctttggtaa cggcagacaa tggtattctt ggattcatgt ggatgatgtt
    10381 gtggcggcaa tcttatttat ttttgaccac gaacaaataa acggtgttgt taattttaca
    10441 gcccctcatc ctgttcaaga aaagaaattt gctgaacgcc ttggaaaaaa aatgcataaa
    10501 ccgtataaaa ctcctgtgcc taaaaaaatt attaaattca ttctaggtga acgtgccatg
    10561 actattttgg acagtcaacg tgcttatccg gaaaaactga tgagtaacca ttttgaattt
    10621 cgctttgaaa cgttacaaga agctttagat gacttattag attgataaaa aaccagattc
    10681 tgattttact cagaatctgg tttttttgtt tcttcttcaa gcgggaaatc aaggactact
    10741 tgactatttg caagtggtct ttttttacca acaagaatca ttaattgtaa catggtgaaa
    10801 gcaatagaac ttctttttct aaaggcaaca aatttttgtt cccattctgt aacatatttg
    10861 gatttaaaat tacgcagtcc tttgaagccg taaaaacctt gactatagcg gtataccagt
    10921 ccggctaatc gttcacctag gaaagcatat ttactttctc caacattggc aagcggcgcc
    10981 ataccggcat taaatgtttg gaagccgtct tctttagctt tttcgaatag attaatgaaa
    11041 aggaaatcca taatacctga tggtgcttct ttagagtatc gcattaggtc aatcgaagtc
    11101 atctcttctg tatatgacgg catcatcgaa gcaaatccaa cgacagtacc ttctccgttt
    11161 ttagcgatag caatcggagc ttgttcgaga taatacgtat cgaaaaatcc taatgagaaa
    11221 cctttttctt ctcttccatc tagccactca tcagaaactg ctcgtaaagt tgtccaagtc
    11281 tcgtgcttga atggtggttc tattatttca aaagtataac cttctcgttc taatttattc
    11341 atgagagcac gctcaccttt tttcttttta ccactcattg taaagttttg aacgtcgaca
    11401 aaaccttcct ctccaagctt gataaagtca aatccgtgat catgtaaata tggaatcatc
    11461 gtgcctcgaa cttcatagaa aacaggtcga tagccaaatc tgtcagcgtt catcataacc
    11521 tcttcaatcg ctgcttccat tttgtccata ttcccagttg gttcgcccat gatgaccatt
    11581 ttgtccgcca agattcggta agagaaaagt acttctccat tagccgccca aaaaagtagt
    11641 ttatctcgta agaacatcgt atgactgact tcatttccgc cccatttcgc taaatgttca
    11701 cgtactttga cagcttcaaa tggagaacct aatttttctt ttgttgtgga taaataaata
    11761 taaataatga ctaaactaac aacagcaata aatacgccaa caaaaccaac taaccataaa
    11821 tgttctgagg caatgcgtaa atagtcagga atttctttgg aatgtttgat atttggtgag
    11881 ttgtaaatac caataacaat gtaacctgct agacatacga tgaaaataat gctatccata
    11941 attactttac tccatgtata aactagtttt tctcggtaaa attcgtttcg agctaagaat
    12001 aaacataata gcacaattcc taaaaagatc gcctgcttca tcgaaaatac gcgagcaagt
    12061 gtgttgaaaa tcgcgcaacc tagaacaatt actgtaataa tatacgcttt ctttgtttta
    12121 cattcaattc ctctcgcaag tcccagtagt aaaaagccaa atgcaacgat ggtaatttgg
    12181 gaagtgaata agaaattaaa cggcataatt ttgtataaga aaggcacatg gtaaatggcg
    12241 tttggaacgg cggaagataa aatcaacaat aatccggaac cgtaaacaaa aataactaag
    12301 aagcgatgag ccactttttg taaaaataat agcggtaacc cttcaagaaa gtcatttact
    12361 tttttaccag ctttttggac gaagaaaagt aatcccacta caaagggaat aatatagtag
    12421 aaaattcggt aaaatagcat ccaagcgagc gctaattctt gagaaacgcc taattggcta
    12481 agtcccagaa tcatcacgac gtcaaatgtc cctactccac caggtaccat cgaagcaatc
    12541 ccaattaccg aagcgataac aaataatggg aacactttga agatatcgac tggttctccc
    12601 atcaatgtac caataatcgc gaaacatcca aaagcgaagc cccactccaa aagagaggcg
    12661 ataattaacg ttaattctct tttgataggt aaatcaacaa aaagtgactt acttttccat
    12721 ttcgttattg taaataagat tgggaagtaa agaccacccg caagaagcca tggccagtaa
    12781 ttaacaaaat gatttgcaaa tcctggaatg agtaaagtgg ctaatgatac taaacagtaa
    12841 atcgataaac cagatactaa aaataaagca atcttagaaa tagcgagtaa tatttcttta
    12901 tgagatgcat tttttccgta aaaacttgct cttaaactgg cacctaatac gccaccaaaa
    12961 ccaccaatat tagtaaatgt attcgtaatc caaccagagg caatcacatg acttggggaa
    13021 aactttccag gcaacaactt aacgatgaca taatcataca atagcattgg agtgacagca
    13081 attaagccaa caataaacat aataaatatt tgttctggac tttgagaagt taaattttct
    13141 tttagcgatg gatagtcaat tcccgtcgca atattaataa tttcaaaaat aacaaaagcc
    13201 atcacaaaag taataaaaac gatttttacg acggtactat ttttttgaaa ccaggcatag
    13261 gcttgcatta atttttcttt cataacagag tctccttaac gatttccat
//
LOCUS       DASEAA010000067        13200 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.067, whole genome shotgun sequence.
ACCESSION   DASEAA010000067 DASEAA010000000
VERSION     DASEAA010000067.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 13200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 13200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..13200
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.067"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..604
                     /locus_tag="U0342_001589"
     CDS             <1..604
                     /locus_tag="U0342_001589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM2422935.1"
                     /translation="FYRLDTTGGSSGSGVYNSKKQILAVNAYEYLNGTGDNFGTRITK
                     EKLNNIYTWAFDNNLSVSKQKGINYELHVQSKGWMGNVANSMTSGTVGLGLRAEAMKI
                     SLSGMPYSGDIQYRSHVQGSGWQGWLKNGEISGTRGQSKRLEAFQVKLTGNIAKNYSV
                     QYRAHVQNKGWQSWVKDGATAGTTGESLRIEAVQMRLVAK"
     gene            741..1364
                     /locus_tag="U0342_001590"
     CDS             741..1364
                     /locus_tag="U0342_001590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465395.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DedA family protein"
                     /protein_id="HEM2422936.1"
                     /translation="METWITSIMADFGYIGIFVLIMVENLFPPIPSEIILTFGGFMTT
                     VTSLNVVMVIIVATLGSVVGAILLYKVASYFGKERLTKIVLKYGRILRLKESDIERAE
                     SFFLKYGSWAVFLCRMIPLIRSLISIPAGMTKMKMSRFLILTTAGSLLWNTVLIGLGA
                     VLGESWNEIVVFMDSFSTIIYSVIAILVVVGLGFFFRARFKKTLDEE"
     gene            1458..2441
                     /locus_tag="U0342_001591"
     CDS             1458..2441
                     /locus_tag="U0342_001591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465394.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aromatic acid exporter family protein"
                     /protein_id="HEM2422937.1"
                     /translation="MRIGMRTVKTAIAATLAIILAEWLHLEYAVSAGIIAILSVQNTK
                     KGSLQLAIQRVYSTVLALSIAAVFFMLIGYNAVSFGLYLLIFIPLAVRLHVADGIVVS
                     SVLVSHILLEQSLSFFWFKNELLLMAVGAGIAIILNLYMPKMEDELKRSQQKIEAIMR
                     QILTEMTQGLRNQSEYHDEFGLLNQLKGTLDYAQEKAARNLDNQFFASSHYYSQYVDM
                     RLVQYRILTQMKRHLVAFDHSSEQSMALAEITEKTAQTLDEHNTAEDLVAEITKMVHE
                     FRSSKLPETRAEFENRAILFQFMNDLRYLLEMKRDFYAEFGLKEKEMTRGR"
     gene            2445..2822
                     /locus_tag="U0342_001592"
     CDS             2445..2822
                     /locus_tag="U0342_001592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465393.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2422938.1"
                     /translation="MVEKIGQVMLYVENQAAVRDFWVEKLDFVVVSEEVVNGEIQWIE
                     IAPTKGVETTFVLQNKKKVAEMNPEMNLGTPSILLFGNNVAELYEEYKDKGITVGDLV
                     DLPMGRVFNFSDNEGNYFAICEK"
     gene            complement(2872..5511)
                     /gene="ppdK"
                     /locus_tag="U0342_001593"
     CDS             complement(2872..5511)
                     /gene="ppdK"
                     /locus_tag="U0342_001593"
                     /EC_number="2.7.9.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate, phosphate dikinase"
                     /protein_id="HEM2422939.1"
                     /translation="MRKFVYQFSEGSKEMKNILGGKGANLAEMTNIGLPVPPGFIIST
                     DACNDYTANNKHLSEAIFEEVKIHLAELEKQTGKIFGFAENPLLVSVRSGAPFSMPGM
                     MDTVLNLGLNDQAAEGLANLTGDARSAYDSYRRFIQMFGDVVFEIPSYQFEQALSRIK
                     KANNYRLDTELTATDLSNLIDAYKLIFSQATGIDFPQDPLEQLRLAIIAVFDSWMNPR
                     AVIYRRLHDIDASFGTAVNIQAMVFGNTGETSGTGITFTRNPSTGEKKVFGEFLLNAQ
                     GEDVVAGIRTPEPISALEERMPTVYKELLQTCELLENHYLDMQDIEFTIEKGKLYVLQ
                     TRSGKRTAKAAIQAAIDFVHEGKITRQEAIMRVETKQLNQLLHPTFLESALKNGQVIA
                     TGLPASPGAATGQIFFEAKEAVQAAERGIPVILVRNETSPEDIEGMARSNAILTAHGG
                     MTSHAAVVARGMGKCCIAGCAELTINEKDKTIILPTGDTLHEGDALSLDGSSGKVYLG
                     EIALREAKIGGYFDELMAWADAEKRLMIRVNADTPADFKKALLFGAEGIGLCRTEHMF
                     FDEKRIPYVRQMILAESLNERESVLAILKEMQKADFNELFRIADGRSVNIRLLDPPLH
                     EFLPTMKQEIEQLAGAMNRTVPQITNRINGLREANPMLGHRGCRLAITFPEIYRMQAE
                     AIIESAIIVHNEGIDVHPEIMIPLIATKNELSYIKKELQQAVQAIFDREQVLIPYDIG
                     TMIEIPRACVTAAEIAEEAAFFSFGTNDLTQLTYGFSRDDATKFLADYYEKDILPKDP
                     FVSIDKNGVGALVEMAVTRGRMTSEHLKMGVCGEHGGDPESIQFFHQLGLSYVSCSPY
                     RVPIARLAAAQAALAEKQLVPTI"
     gene            complement(5530..6342)
                     /locus_tag="U0342_001594"
     CDS             complement(5530..6342)
                     /locus_tag="U0342_001594"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="kinase/pyrophosphorylase"
                     /protein_id="HEM2422940.1"
                     /translation="MENPVIIYVISDAIGETAQHIIRAVTAQFSLNKPADIRRHAFIR
                     DESALLETLEEAKAADGIVVQTLVQAKLAEYATNFCVQNNIPNVDLLHTLTAAVEAKT
                     GLKSKQDPGNMRRLDSNYFDRIAAIEFAVKYDDCKDPRGLLDADIVLVGVSRTSKTPL
                     SSFLANQNWKVANVPLVPEIPIPAELFQIPAERIIGLTTTPEKLAQIRKVRLKSIGLD
                     EASSYSSEKRILEELEYGYDTFKKLGCQVIHVEDKAIEETAALITEIITSYH"
     gene            complement(6355..6972)
                     /locus_tag="U0342_001595"
     CDS             complement(6355..6972)
                     /locus_tag="U0342_001595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2422941.1"
                     /translation="MIPIELSPRQHQIVAYVRANEPATGDSIAAHLKLTRATIRADLS
                     ILTMTGILDARPKVGYFYSGLETNPIHFDEIRQLKVADIMTQPFFAKKETSVYDAIVM
                     LFMEDIGSLYVVDEDLLVGLVSRKDLLKGALADADTKATPIATIMTRMPNLVTVTKND
                     TVLHAAEQLVFHQIDSLPVLENTKVVGKISKTRITALFVDTIKKV"
     gene            complement(7094..7726)
                     /locus_tag="U0342_001596"
     CDS             complement(7094..7726)
                     /locus_tag="U0342_001596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemolysin III family protein"
                     /protein_id="HEM2422942.1"
                     /translation="MNVTSYNWKEEVANAITHGIGFILSIPALVLLIIFAAGKDNPLY
                     LTSFLIYGISLMLLYICSTLLHSFKPCKARTVFNIMDHAAIYVLIAGSYTPFVLITIQ
                     GTLGWTLFGVIWGLAIAGIIYKIFMTGKLKLLSTSVYLLMGWMVMFAIKPLYAGLTPT
                     GFWLLATGGIMFTVGAVFYSIPRVPYMHAIWHLFVIAGTAFMYFCILFYV"
     gene            7905..8744
                     /locus_tag="U0342_001597"
     CDS             7905..8744
                     /locus_tag="U0342_001597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM2422943.1"
                     /translation="MRKIKIITDSTAGLTLEEAAKWNIDVLYLTVEIDGQIYNPKTDI
                     TPEEFMVRMAETKELPKSSQPAIGSFVEAYEKYTAEGYEILSIHLTEKLSGTVNAARQ
                     AADMVEGNITVVDCDYTARGQAFQVLKAAEMAQSGDYSVEEIHAKINDIRDKTKLYIV
                     VVTLDNLIKGGRVGRMQGFFGSLLNIKLIAKLTDGQLEEETKVRSNKKVLQYCLNLIK
                     DEPKKIQHLDVVHADGLNLADDFIAESKEITGLTEIPLFFADPVISTHAGTGAFAFMY
                     YTD"
     gene            8759..9544
                     /locus_tag="U0342_001598"
     CDS             8759..9544
                     /locus_tag="U0342_001598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2422944.1"
                     /translation="MTKKKWLWLTGSVLVIALLVGAVFGIKYYKESKEIPINLVAMGD
                     SLTEGVGDENKGGGYVGIIPKELEEESNIPSVKTSNYGVSGNKITQLEKRLKTNKDFQ
                     EDVKNANVITITIGGNDVMAILQSRLLNVNVDDFTKANKEFQQELETLLKDIRSYNKD
                     AAIFLMGIYNPYTTYFSDIKQFDEIISDWNKASKKTIQQDSNAYFVPIAKVLEDRNAD
                     NKDKPNSLLSDDYFHPNHRGYEKMTSELDKAIVKQLNEGNIPK"
     gene            9560..10174
                     /locus_tag="U0342_001599"
     CDS             9560..10174
                     /locus_tag="U0342_001599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YpmS family protein"
                     /protein_id="HEM2422945.1"
                     /translation="MQRETRSAPKKPKRNYWKWVCITLISVLLISAGWIYVAVFKLSP
                     QDEPTPSLISNKSMVEFQTSTTKADLNQLISSYIEDFSKDQDIGYKVFVANNVNFTAE
                     AEIFGEPVELRLKFSPEVVDNGNVELTLKDMSVGALPLPVSYVMNYVSKNYKFPDWVT
                     IMPKKEKIYLSLDKLKLQGGTKVRADTLNLKKDDISFTLLVPVK"
     gene            10210..10743
                     /gene="msrA"
                     /locus_tag="U0342_001600"
     CDS             10210..10743
                     /gene="msrA"
                     /locus_tag="U0342_001600"
                     /EC_number="1.8.4.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (S)-S-oxide reductase MsrA"
                     /protein_id="HEM2422946.1"
                     /translation="MTKESLEKATFAGGCFWCMVKPFDTQPGIEKVISGYTGGHTVNP
                     TYKEVCSGTTGHTEAIQITFDPAVFPYEKLVEVYWQQTDPTDAAGQFLDRGDSYRPVI
                     FYHNEEQKEIAEKSKAALDASGRFKKPIVTEIAKAETFYPAEEYHQDFYKKEKAHYEG
                     YQVASGRAAFIDANWKG"
     gene            10750..11187
                     /gene="msrB"
                     /locus_tag="U0342_001601"
     CDS             10750..11187
                     /gene="msrB"
                     /locus_tag="U0342_001601"
                     /EC_number="1.8.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide-methionine (R)-S-oxide reductase MsrB"
                     /protein_id="HEM2422947.1"
                     /translation="MDESKKNERLQQLTDIQYNVTQKAGTERPFQNEFYDNEAKGIYV
                     DIVSGKPLFSSNDQYDAGCGWPSFTKPIDEAEVIEHRDLTHGMIRTEVKSADADSHLG
                     HVFPDGPQDKGGLRYCINSAALRFIPVDKLEEEGYQAYKKIFE"
     gene            11270..12175
                     /locus_tag="U0342_001602"
     CDS             11270..12175
                     /locus_tag="U0342_001602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2422948.1"
                     /translation="MLKIAVVGLGGIAQKAYLPVFAEMENIEVHLYTRDAQKLKHLSE
                     KYRFDHYHQSIHSMIESGVNAAFVHSSTASHPEVIRTFLANHIPVYVDKPIADNLSEV
                     EELTRLAEEQNTLLMTGFNRRYAPKYQELKALTDTNMIIMQKNRAAQPGEARTFIYDD
                     FIHVIDTVRFLLDAQIEQLHVVPVWQENLLASITVQITAGGKVATAIMNRDSGVNEER
                     LAVMTPSAKYEVENVTETHIYEGTTERFERFGDWETTLYKRGFVSIIQAFLTAVRNGE
                     KAPISKEDALETHRLAEEILRKIEN"
     gene            12238..12471
                     /locus_tag="U0342_001603"
     CDS             12238..12471
                     /locus_tag="U0342_001603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422949.1"
                     /translation="MGRSFYHFLMTYRDPKLTDQKTEFANNAYRDHSFPKQTRNYHIL
                     CDYLEFNAPYLPGMSIFDELWDAYLLDEEKNKH"
     gene            12483..13184
                     /gene="deoD"
                     /locus_tag="U0342_001604"
     CDS             12483..13184
                     /gene="deoD"
                     /locus_tag="U0342_001604"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM2422950.1"
                     /translation="MSVHIEAKQGEIAETILLPGDPLRAKYIAETFLEDVVLFNQVRG
                     MLGFTGTYKGEKVSVMGTGMGIPSISIYVNELIQSYDVKNLIRVGTMGGIQADVKVRD
                     VVIAQAASTDSQINRNTFAGVDFAPVADFSLLKKAYDAGIEKGLSLKVGNVFSADRFY
                     NDQLDKQQLADYGVLGIEMEAAALYTLAQKYGRRALAILTVSDHIFTGEETSAEERQT
                     TFNDMIVVALEAAIK"
BASE COUNT         4246 a         2336 c         2779 g         3839 t
ORIGIN      
        1 tttttataga ttagatacaa caggtggtag tagtggtagt ggtgtttata attctaaaaa
       61 acagatttta gcagtaaacg catatgaata tttaaatggt accggggaca actttggtac
      121 aagaataaca aaagaaaaac taaataatat ttatacttgg gcgtttgaca ataatctttc
      181 tgtaagcaaa caaaaaggga taaattacga gctccacgtc caaagtaagg gatggatggg
      241 aaacgttgct aatagtatga cttcgggcac agttggcctt ggcttacgag cagaagcaat
      301 gaaaattagt ttatcaggga tgccgtattc tggagatatt caatatcgct cacatgtaca
      361 aggtagtgga tggcaaggtt ggttgaaaaa tggggaaatt tctggaactc gtggacagtc
      421 aaaacgtctg gaagctttcc aagtgaaatt aactggaaat attgctaaaa attatagtgt
      481 gcagtataga gcgcatgtcc aaaataaagg ttggcaaagt tgggttaaag atggagcaac
      541 agcaggaaca acaggagaaa gtttaagaat agaagctgta caaatgcgac tagttgcaaa
      601 ataaatttaa aagaatttgg tgtgtaaaat gccaaattct ttttctttta ccaaattgat
      661 tgaaaaagta gagctagtat agtagaattg aaaagcaagc acttacttta aaagggaaat
      721 aaagtacagg agtgtgtttt ttggaaactt ggattacaag tattatggct gattttggct
      781 atataggtat ttttgttttg attatggttg aaaacttgtt tccacctatt ccctctgaga
      841 ttatcttaac ttttggtgga tttatgacga cagttacatc attgaatgtc gtgatggtga
      901 ttattgtagc aacactaggt tctgttgtgg gcgcaatttt actgtataaa gtcgcttctt
      961 attttggtaa agaacgactc acgaaaattg tattaaaata cggccggatt ttgcggctga
     1021 aggaatctga tattgaacgc gcagaaagtt tctttttgaa atatggaagt tgggctgtat
     1081 ttttatgtcg gatgattccg ctaatacgaa gcctgatttc gattccagct gggatgacca
     1141 agatgaaaat gtcgaggttt ctaattttga cgaccgcggg aagcttactt tggaatacag
     1201 ttttaattgg acttggagct gtgcttgggg agtcatggaa tgaaattgtt gtttttatgg
     1261 atagcttttc aacaataatt tatagcgtca ttgcgatact tgttgtggtc ggtttaggat
     1321 tctttttccg agcacgtttc aaaaaaacac tagatgaaga ataatgtagg accttgagga
     1381 atgatcttca aggtttttct tttgtgattt tcgctttcgt gctatgatag gttggacata
     1441 gaaaggggag tggacatatg cggattggaa tgcgaacggt gaaaaccgcg attgcagcga
     1501 cactggcgat aattttggcg gaatggctac acttggaata tgcagtttcg gcagggatta
     1561 tcgcaatttt aagtgtacaa aatacgaaaa aagggtcttt acaactagcg attcagcggg
     1621 tttattcgac cgttttggca ctatctattg ctgccgtatt tttcatgctc attggttata
     1681 acgcggtgag ttttggactt tatttactga tttttattcc gcttgctgta agactgcatg
     1741 ttgctgatgg aattgtggtg agctcggtac tcgtatcgca tattttactc gaacaatcat
     1801 tatccttttt ctggtttaaa aatgaactgt tacttatggc agttggcgca ggtattgcga
     1861 ttattttaaa tttatatatg ccaaaaatgg aagacgaatt aaaacgcagc caacaaaaaa
     1921 tagaagcaat tatgcggcaa attttgacgg aaatgacgca agggcttcgg aatcagtcgg
     1981 agtatcatga tgagtttggc ttattaaatc aattaaaggg tacattagac tatgcacagg
     2041 aaaaagcagc aagaaattta gacaatcagt tttttgcttc ttcccactat tattcgcagt
     2101 acgtcgatat gcggcttgtg caatatcgaa ttttaacaca gatgaaacgg catttagtcg
     2161 cgtttgatca ttcttctgag caaagtatgg cgctggcaga aattacagaa aaaacagcac
     2221 agacgttaga tgagcataat acagcagagg atttagtggc ggaaattact aagatggtgc
     2281 atgagtttcg aagtagtaag ctcccagaga cacgagcaga atttgaaaat agagcgattt
     2341 tattccaatt tatgaatgat ttgcgctatt tattagaaat gaagcgtgac ttttatgcgg
     2401 agtttggact aaaagaaaaa gaaatgacga ggggacgatg aacgatggtt gaaaaaattg
     2461 gtcaagtgat gttatatgta gaaaatcaag ctgcagtgag agatttttgg gtagaaaaat
     2521 tagattttgt cgtagtttca gaagaagtgg taaatggcga aattcagtgg attgagatag
     2581 cgccaacaaa aggtgtagaa actacttttg ttcttcaaaa caaaaagaaa gtggcggaaa
     2641 tgaacccaga aatgaatctt gggacaccat ctattttact atttggaaat aatgtcgcag
     2701 aactttatga agaatataaa gataaaggca ttacggttgg tgatttggtc gatttaccaa
     2761 tgggccgggt gttcaatttt tcggataacg aaggaaatta ctttgcgatt tgtgaaaaat
     2821 aataggagaa aaagccagat gacagtctat ttgattgtca tctggctttt tttagatagt
     2881 tggaactaat tgtttctcag ctaatgctgc ttgagctgct gcaaggcggg caatgggaac
     2941 gcggtacggg gaacaagaaa catagctaag tcctaattga tggaagaact ggatagattc
     3001 cggatcgcca ccatgttcgc cgcaaacccc catttttaaa tgttccgaag tcattcgtcc
     3061 acgtgtaact gccatttcaa ctagtgcgcc gacaccattt ttatcaatcg aaacaaatgg
     3121 atctttaggt aaaatatctt tttcataata atcggctagg aacttggtcg catcatcacg
     3181 tgaaaaacca taagtgagct gtgttaaatc attggttcca aagctaaaga acgctgcttc
     3241 ctcggcgatt tcggctgcag ttacacacgc tcgcggaatt tcaatcattg ttccgatatc
     3301 atagggaatc aacacttgtt ctctatcaaa aatagcttgg actgcttgtt gcagttcttt
     3361 ttttatatag ctaagttcgt ttttcgtagc gatgagtgga atcatgattt ccgggtgaac
     3421 atctattcct tcattatgaa cgataattgc actttcgata attgcttccg cctgcatccg
     3481 gtaaatttct gggaacgtaa tagcaagccg gcaaccacga tgtccgagca tgggattggc
     3541 ttctcttagt ccgttgattc ggtttgtaat ttgaggaacg gttcgattca tcgcgccagc
     3601 caattgttct atttcttgct tcattgttgg taaaaattca tgtaaaggtg gatcaagcaa
     3661 gcgaatgttt accgaacgac cgtctgcaat acggaataat tcattgaaat cggctttttg
     3721 catttctttt aaaattgcta aaacagattc gcgctcgttt aatgattctg ctaaaatcat
     3781 ttggcgtaca taaggaattc gtttttcatc aaaaaacata tgctcggtac ggcaaagacc
     3841 aataccttcc gcaccaaata aaagcgcttt tttaaagtct gctggggtat ctgcatttac
     3901 tcgaatcatt aatcttttct ccgcatcagc ccaggccatc agctcgtcaa aatagccacc
     3961 aattttcgct tctctgaggg caatttctcc aaggtaaact ttgccggaac taccatcaag
     4021 ggagagcgca tcaccttcat gcagtgtgtc gccagtagga agaatgatcg ttttatcttt
     4081 ttcattaata gtaagttcgg cacatccagc gatacagcat tttcccattc cgcgggcaac
     4141 gacggcagcg tgagaagtca taccaccatg agcggttaaa atagcgttac tccgtgccat
     4201 accttcgata tcctcaggag aagtctcatt acgaactaaa atgacaggaa tgccacgttc
     4261 ggctgcttgg acagcttctt ttgcttcaaa gaaaatttgc cccgttgcag caccagggct
     4321 tgcaggtaaa ccagttgcga tgacttgacc atttttaaga gcgctttcaa gaaaagttgg
     4381 atgaagtaat tggtttagtt gttttgtttc cacacgcata atggcttctt gacgagtgat
     4441 ttttccttca tggacaaaat caatggccgc ttgaatagct gctttggctg ttcgcttgcc
     4501 acttctagtt tgtaagacat agagtttgcc tttttcgatg gtaaattcaa tatcttgcat
     4561 gtctaaataa tgattttcga gaagttcaca agtctggagg agttccttgt aaacagtggg
     4621 cattctttct tccagcgcac ttatcggctc aggggtgcga attcctgcaa ccacatcttc
     4681 accttgcgca ttcagtaaaa attccccgaa caccttcttt tcaccggtgg aaggattgcg
     4741 ggtaaaggta atgccagttc cactcgtttc tccagtgttt ccaaaaacca tcgcttgaat
     4801 attaacggct gtaccaaaac ttgcatcaat atcatgtaat ctgcggtaaa taacagcgcg
     4861 aggattcatc caggaatcaa aaacagcgat tatcgcaagc cgcagttgtt ccagtggatc
     4921 ttgtggaaag tctataccag ttgcttggct aaaaattagt ttgtaagcat cgatgagatt
     4981 gcttaaatca gtcgcagtta attctgtatc taagcggtag ttgtttgctt ttttgatgcg
     5041 actaagagcc tgttcaaatt ggtagcttgg aatttcaaaa acaacgtcac cgaacatttg
     5101 aataaaacgg cggtatgaat cataagccga acgagcatca ccagttaagt tggcgagccc
     5161 ttctgcggct tggtcattta aaccgagatt gagcacggta tccatcatac cgggcatcga
     5221 aaaaggggca cccgaacgaa cggaaacgag tagagggttt tctgcaaatc cgaaaatttt
     5281 cccggtttgt ttttccagtt ctgctaaatg aatttttact tcttcaaata tagcttcgga
     5341 aaggtgttta ttgtttgccg tgtaatcgtt acaggcatcg gtcgagataa taaaaccagg
     5401 aggcacaggc aaaccgatat tcgtcatttc ggccaaatta gcaccttttc ctcctaaaat
     5461 atttttcatt tctttagaac cttcactgaa ctgatagaca aattttctca cattattcac
     5521 ctcttcaaat tagtggtaac tcgtgataat ttccgtgatt agggcagcgg tttcctcaat
     5581 ggctttatct tctacatgaa tgacttggca gccaagcttt ttgaatgtgt cataaccata
     5641 ttctagttcc tctaaaatgc gtttttcact ggaataactg cttgcttcgt ctaaaccaat
     5701 ggattttaaa cggactttgc gaatttgcgc tagtttttct ggggtggttg taaggccgat
     5761 aatacgttcc gctgggattt ggaaaagttc ggctggaatc ggaatttcgg gaacaagtgg
     5821 tacattagca actttccaat tttgattggc aagaaagcta ctcagagggg ttttgctcgt
     5881 tcttgatacc ccaacaagaa caatatctgc atctaatagg ccacgtggat ctttgcaatc
     5941 atcatatttt actgcaaatt caatggcagc aatacgatca aaataattgc tatcaagacg
     6001 acgcatattt cctgggtctt gtttagattt taagccagtt tttgcttcga ccgcagcggt
     6061 tagtgtatgt aacaaatcta cgtttggaat attgttttgc acacaaaaat tagtggcata
     6121 ctcagctaac ttagcttgta cgagcgtttg aacgacgata ccatctgccg ctttggcttc
     6181 ttctaacgtt tcaagtaaag cgctctcatc acgaataaaa gcatggcggc gaatgtccgc
     6241 aggcttatta agcgaaaact gagctgttac cgcgcgaata atatgttgag cagtttctcc
     6301 gatagcatct gaaataacgt atataataac cggattttcc atattttcct cctactaaac
     6361 ctttttaatt gtatctacaa atagcgcagt aatacgggtt tttgaaattt ttccgacgac
     6421 tttggtgttt tctagaacag gaagcgaatc gatttggtgg aatacgagtt gttctgcggc
     6481 atgtaacaca gtgtcgtttt tcgtaacggt aacgaggttt ggcatccgcg tcataattgt
     6541 cgcaatcggc gtcgcttttg tatctgcatc agcaagggcg ccttttagca agtcttttct
     6601 agagacaagc ccaaccaaaa gatcctcatc aacgacgtat aaactaccaa tatcttccat
     6661 aaagagcata acaatcgcat catacacact cgtttctttt tttgcgaaaa atggttgtgt
     6721 cataatatcg gctactttta actgacgaat ttcatcaaag tgaattggat tcgtttctaa
     6781 accagagtaa aagtaaccaa cttttggacg agcatctaaa atgccagtca tggttaaaat
     6841 tgacaagtca gctcgaatgg tggctcgtgt tagttttaaa tgcgcagcga tagagtcacc
     6901 tgtagcaggc tcattcgcgc gaacataggc aacaatttga tgttgtctag gagaaagttc
     6961 gatgggaatc acatcctttt attgtgttat gctaatcatt atatagtatg acataattaa
     7021 aaacaagtct caattgtgac atactatata aaaagacctt ctcgcattgg agaaggtctt
     7081 tgcattgcgt tatttaaaca taaaataaaa tacagaaata cataaaagcg gttcccgcga
     7141 taacaaataa atgccaaatc gcgtgcatat acgggacacg agggatactg taaaaaacag
     7201 cacctactgt aaacataatc ccaccagttg caagtaacca aaacccagtt ggagtcagcc
     7261 cggcataaag cggtttaatg gcaaacataa ccatccaacc cataagtaag taaacacttg
     7321 tcgacaaaag ttttaatttg ccagtcatga atatcttata aataatccca gcaattgcga
     7381 ggccccaaat gacaccaaat agtgtccagc cgagtgtccc ttgaatcgta atcaaaacaa
     7441 atggcgtata actgccagca attaatacat aaatcgctgc gtggtccata atgttaaaaa
     7501 ccgtccgcgc cttgcaaggt ttaaaactat gaagcagggt ggaacaaata taaagcaaca
     7561 tgagggaaat tccataaatt aaaaaacttg ttaaataaag aggattatct tttccggcgg
     7621 cgaatattat aagtaagacg agcgcgggaa tactaaggat aaacccaata ccatgcgtta
     7681 tagcattggc tacttcttct ttccaattgt aagaagtgac attcatttta tcaccatact
     7741 tttctacaaa ttttgtgtgt tttatatatc tatcatacgc taaaaaatac agaatagaaa
     7801 gacaaatacc atttctttct cttttcttaa aactagttta taggttgtgt atactgccgg
     7861 ggatgttata ataagataaa ataagcaaaa ctggatgtgg ctatatgaga aaaataaaaa
     7921 ttatcacaga ttcaactgct ggactaacat tagaagaagc agcaaaatgg aatattgatg
     7981 ttttatattt aaccgtagaa attgatgggc aaatatacaa ccctaaaaca gacattacac
     8041 cagaagaatt tatggtacga atggcagaaa caaaagaatt accaaaatct tctcaacctg
     8101 cgattggttc ttttgtggaa gcatacgaaa aatatacggc tgaaggctat gaaattcttt
     8161 ctatccactt aactgaaaaa ctaagtggta ctgtcaatgc ggctcgccaa gcagctgata
     8221 tggtagaagg aaatattacg gttgtagact gcgattatac agctcgtggg caagcattcc
     8281 aagtactaaa agctgctgaa atggctcagt cgggcgatta ttctgtagag gaaattcacg
     8341 caaaaattaa tgatattcgt gacaaaacaa aactttatat cgttgtcgta acactcgata
     8401 atttaattaa aggtggacgt gttggacgga tgcaaggctt cttcggtagt cttttaaata
     8461 tcaaattaat tgccaaatta actgacggac aattggaaga agaaacgaaa gtccgcagca
     8521 acaaaaaagt attacaatat tgcctaaacc taattaaaga tgaaccgaaa aaaattcagc
     8581 atctagacgt tgttcatgcg gatgggctta atctggcgga tgatttcatc gctgaatcaa
     8641 aagaaataac cggtttaaca gaaattccac tattttttgc agacccagtt atctccacac
     8701 atgctggaac tggtgcgttt gcatttatgt actatactga ctaagtgagt gattgcatat
     8761 gacaaagaaa aaatggctgt ggcttacagg gagcgtgctt gttatcgcac ttcttgttgg
     8821 cgcagttttt ggtatcaagt attataaaga atcaaaagaa attccgatta atctcgttgc
     8881 catgggtgat tcattaacag aaggtgttgg tgatgaaaac aaagggggcg gatatgtcgg
     8941 cattatccct aaagaactag aagaagaatc aaacattcca agcgtaaaaa cgagtaatta
     9001 cggggtatct ggaaacaaaa taacccaact cgaaaaacgt ttaaaaacaa acaaagactt
     9061 ccaagaagat gtcaaaaatg cgaatgtaat aacaatcacc attggcggaa atgatgtcat
     9121 ggctattttg caatctcgtc tgttaaatgt aaatgtagat gattttacaa aagcaaacaa
     9181 agaattccaa caagagttag agacacttct aaaagacatt cggtcctata acaaagatgc
     9241 agcgatattt ttaatgggta tttacaatcc atatacaact tatttcagcg atatcaaaca
     9301 atttgacgag attatctctg attggaataa agcttccaag aaaactatcc agcaagatag
     9361 caatgcttat tttgtaccta ttgcaaaagt tttagaagac cgaaatgcag ataataaaga
     9421 taaacctaat tcgctactgt cagatgatta tttccatcct aatcatagag gatatgagaa
     9481 gatgacatcg gaattagaca aagccatcgt aaaacaatta aacgaaggca atattcccaa
     9541 atagaaaggt gttaaaatcg tgcagagaga aacacgatcg gctccaaaaa aaccaaaacg
     9601 taattattgg aaatgggtat gtatcacatt aattagtgta cttctaattt ctgctggctg
     9661 gatttatgta gcagtattca aactcagccc gcaagatgaa cccacgccat ccctgattag
     9721 caataaatca atggttgaat ttcaaacgag tacaacaaaa gctgacttaa accaattgat
     9781 tagttcttat atagaagatt ttagcaaaga tcaagatatc ggttataaag ttttcgtcgc
     9841 aaataatgtt aattttactg ccgaagctga aatttttggt gaaccagtcg aactacgctt
     9901 gaaattctca ccggaagttg tcgataatgg caatgttgag ttgacgctta aagatatgtc
     9961 cgttggcgct ttgccactgc ccgtgtctta cgtaatgaac tatgtaagca aaaactataa
    10021 attccctgat tgggtgacaa ttatgcctaa aaaggaaaaa atctaccttt ccctagataa
    10081 actaaaactg caaggcggca caaaagtacg tgctgatacg ctaaatttga agaaagatga
    10141 catttcgttt acacttttag taccagttaa gtaatttggc tggctgaatc ctagttaggg
    10201 ggcattttta tgacaaaaga atcacttgaa aaagcaacat ttgctggagg atgcttttgg
    10261 tgtatggtaa aaccttttga cacgcaacca ggaattgaaa aagttatttc aggttatacg
    10321 ggtggtcata cggttaatcc aacctataaa gaagtttgca gcgggacaac aggacataca
    10381 gaagcaatcc aaatcacatt tgatccggca gtttttccat atgagaaatt agtcgaagta
    10441 tattggcaac aaactgatcc gactgatgcg gcaggccaat ttcttgaccg tggtgattcg
    10501 tatcgaccag ttatttttta ccacaatgaa gagcaaaaag aaattgctga aaaatcaaaa
    10561 gcagcccttg atgcgagtgg tagatttaaa aagccgattg tcacagaaat tgccaaagca
    10621 gaaacatttt atcctgctga agaatatcat caagattttt acaagaaaga aaaagcgcac
    10681 tatgagggat atcaagttgc ttcaggtcgt gctgcattca tagatgccaa ctggaaaggg
    10741 tgaaatcaaa tggatgaaag taaaaagaac gagcgccttc aacaactaac agatatacaa
    10801 tataatgtga cccaaaaagc gggtaccgaa cgcccatttc aaaatgaatt ttatgataat
    10861 gaggcaaaag gcatttatgt agatatcgtt tcaggaaagc cgcttttttc atccaatgac
    10921 cagtacgatg ctggctgtgg ttggccgagc tttactaagc ctattgatga agcagaagtt
    10981 attgaacatc gagatttgac ccatggtatg attcggacgg aagtgaaatc tgctgatgct
    11041 gattcccatt tagggcatgt ttttccagat ggaccacaag ataagggtgg acttcgctac
    11101 tgcattaact ccgcagcgct cagattcata cctgtggata agttagaaga agaaggctac
    11161 caagcatata agaaaatctt tgaataaaca catgatgcca gaaaatgaaa tgtgtagaat
    11221 aatatcgcga aatcattctc tggcattgtt gtgataagga gcgatacaca tgttaaaaat
    11281 agcggtagta gggcttggcg gcattgcaca aaaagcatat ttgccagttt ttgctgaaat
    11341 ggaaaatatc gaggtacatc tttacacgag ggatgcgcag aaattaaagc atttaagtga
    11401 gaaatatcgt tttgatcatt atcatcaaag tattcattct atgattgagt ctggcgtgaa
    11461 tgcagcgttt gttcattcat ctacagcaag ccacccagaa gtaatccgga cttttctagc
    11521 aaatcatatt ccagtttatg tggataaacc aattgccgac aatttatccg aagtagaaga
    11581 attaacacgc ctagctgaag aacaaaatac gttacttatg actggcttta atcgccgtta
    11641 cgcgccaaaa tatcaagaat taaaagcctt aacagatacc aacatgatta ttatgcaaaa
    11701 aaatcgcgcg gcgcaaccgg gtgaggctcg tacatttatt tatgacgatt ttattcatgt
    11761 cattgatacc gtgcgttttt tactagatgc ccaaatagaa cagttacatg tcgttccggt
    11821 atggcaagag aaccttctag caagtataac ggtacaaatt acagcgggag gtaaagtggc
    11881 aacggcgatt atgaaccgag atagtggcgt gaacgaagaa cgattagcag tgatgacccc
    11941 gagcgccaaa tatgaagtag aaaatgttac ggaaacgcat atttatgaag ggacaacaga
    12001 gcggtttgag cgttttggag attgggaaac gacgctttac aaaagaggtt ttgtatctat
    12061 catccaagcc ttcttaacgg ccgtgcgaaa tggggaaaaa gcaccaattt ccaaagaaga
    12121 tgccttagaa acacatcgac ttgcagaaga aattctacgt aaaatcgaaa attaacttta
    12181 tttttttcag gaaatcaact atagttaaag cataaaaaga gcggagtgtg ttgtacgttg
    12241 ggaagatcat tttatcattt tttaatgaca tatcgggacc cgaagctaac agatcagaaa
    12301 acggaatttg ccaacaatgc ataccgagat catagttttc caaagcaaac aagaaactac
    12361 catattcttt gtgattatct ggagtttaat gcgccgtatt taccgggaat gtctattttt
    12421 gatgaacttt gggatgctta tttgctagat gaagagaaaa acaaacacta ggaggaaaaa
    12481 agatgagcgt acatatcgaa gcaaaacaag gggaaattgc agaaactatt ttattaccag
    12541 gagatccatt gagagcaaaa tatattgcgg aaacattttt ggaagatgtc gttttattca
    12601 accaagtgcg aggcatgtta ggatttactg gtacatacaa aggcgaaaaa gtttctgtta
    12661 tgggaactgg tatgggaatt ccatctattt cgatttatgt aaatgaatta attcaaagct
    12721 atgatgtgaa aaacttgatt cgcgttggta ctatgggcgg cattcaagcg gatgtaaaag
    12781 tacgtgatgt tgtcattgca caagcggcat caacggattc gcaaattaat cgcaatactt
    12841 ttgctggcgt agattttgca ccagtagctg atttttctct tctaaaaaaa gcgtatgatg
    12901 caggtatcga aaaaggatta tcgcttaaag ttgggaatgt tttttctgca gaccgttttt
    12961 ataatgatca actagacaaa caacaattag cagactatgg tgtgcttgga attgaaatgg
    13021 aagcagcggc actttatacg ttagcacaaa aatatggtcg tcgtgcttta gctattttaa
    13081 ctgtaagtga ccatattttc actggggaag aaacatccgc ggaagagcgc caaactactt
    13141 tcaatgatat gattgttgta gcacttgaag cagcaataaa ataattttaa ttactaactt
//
LOCUS       DASEAA010000068        12987 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.068, whole genome shotgun sequence.
ACCESSION   DASEAA010000068 DASEAA010000000
VERSION     DASEAA010000068.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12987)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12987)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12987
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.068"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..137)
                     /locus_tag="U0342_001605"
     CDS             complement(<1..137)
                     /locus_tag="U0342_001605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1146 domain-containing protein"
                     /protein_id="HEM2422951.1"
                     /translation="MYNIIMESPYVIIISHLLFIVITFWALQAINYEKFIKKNHVTQA
                     R"
     gene            complement(259..663)
                     /locus_tag="U0342_001606"
     CDS             complement(259..663)
                     /locus_tag="U0342_001606"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466051.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit epsilon"
                     /protein_id="HEM2422952.1"
                     /translation="MGSLNVSIVTPDGPVYEGVAQMVIARTKAGELGILPGHVPLVAP
                     LKIDIVRLKVESGEEWVAVNGGFMEVNGEEVNILADTAEREQDIDIDRAEKAKQRAEE
                     ELSRAKEQKVDEVMAQLALQRAINRIHAKEHN"
     gene            complement(685..2106)
                     /gene="atpD"
                     /locus_tag="U0342_001607"
     CDS             complement(685..2106)
                     /gene="atpD"
                     /locus_tag="U0342_001607"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466052.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit beta"
                     /protein_id="HEM2422953.1"
                     /translation="MSKGQVIQVMGPVVDVKFEGGNLPEIYNALVIEYKSDAEEAPTS
                     QLTLEVAIQLGDDVVRTIAMASTDGVQRGMEVIDTGSPITVPVGTVTLGRVFNVLGNT
                     IDLDEPLPSDIKRNKIHREAPTFDQLATTTEILETGIKVVDLLAPYLKGGKIGLFGGA
                     GVGKTVLIQELIHNIAQEHGGISVFAGVGERTREGNDLYFEMKDSGVIEKTAMVFGQM
                     NEPPGARMRVALTGLTIAEYFRDEEHQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVG
                     YQPTLATEMGQLQERITSTNVGSVTSIQAIYVPADDYTDPAPATTFAHLDATTNLERK
                     LTEQGIYPAVDPLASTSRALSPDIVGEEHYAVATEVQRLLQRYKELQDIIAILGMDEL
                     SDEDKQSVSRARRVQFFLSQNFHVAEQFTGQKGSYVPVKETVKGFKDLLAGKYDHIPE
                     DAFRSVGRIEDVLEKAKDMGVEV"
     gene            complement(2167..3039)
                     /locus_tag="U0342_001608"
     CDS             complement(2167..3039)
                     /locus_tag="U0342_001608"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466053.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit gamma"
                     /protein_id="HEM2422954.1"
                     /translation="MASLIDIKQRITSTRKTSQITKAMQMVSAAKLGRAESNARSYEP
                     YVSKIKDVVTHVASTGNSSDHPMLVSRPVHRTGYIVLTSDTGLAGSYNSSVIKEVFQE
                     INKKHTSSDEYAIITVGRSARDFFKARQMNVVLEVQGITDHPIFAEIKDIASNTVQMF
                     EDGVYDEVFIYYNHHINSISSELRKEQLLPLTEFHEKGKETDVDLTTYEFEPSEQEIL
                     EVLLPQYVESLIFGALLDAKAAEHAARMTAMRSATDNASDLISDLSLQYNRARQAAIT
                     QEITEIVGGAAALE"
     gene            complement(3077..4591)
                     /locus_tag="U0342_001609"
     CDS             complement(3077..4591)
                     /locus_tag="U0342_001609"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466054.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit alpha"
                     /protein_id="HEM2422955.1"
                     /translation="MSIKAEEISSIIKQQIENYQSELKVSDVGTVTYIGDGIARAHGL
                     DNAMAGELLEFSNGVMGMAQNLETNDVGIIILGPYTEIREGDEVRRTGKIMEVPVGEA
                     LIGRVVNSLGQPVDGLGPIETTGTRPIEAVAPGVMQRQSVNEPLQTGIKAIDALVPIG
                     RGQRELIIGDRQTGKTSVAIDTILNQADQDMICIYVAIGQKESTVRNAVETLRHHGAL
                     DYTIVVTAAASQPAPLLYLAPYAGVAMAEEFMYNGKHVLVVYDDLSKQAAAYRELSLL
                     LRRPPGREAYPGDVFYLHSRLLERAAKLNDSLGGGSITALPFVETQAGDISAYIPTNV
                     ISITDGQIFLQSDLFFSGVRPAINAGLSVSRVGGSAQIKAMKTVAGTLRLDLAAYREL
                     ESFSQFGSDLDAATRAKLERGKRTVEVLKQDLHKPLKVEKQVLILYALVHKYLDDVPV
                     HDVLRFESEMNTWFDHNHPELLEEIRTTKKLPDEAKLEAALKEFKNTFVPSEEK"
     gene            complement(4618..5157)
                     /locus_tag="U0342_001610"
     CDS             complement(4618..5157)
                     /locus_tag="U0342_001610"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit delta"
                     /protein_id="HEM2422956.1"
                     /translation="MSKDLEVAGRYANALFQVAQDKDLVDVFSEELTELKAALKANED
                     FVKLLENPTFTTEQKKNLASAVFEKINPTLRDFIYLLIDRSREDYLSVIADVYQKRVN
                     DLNGVADADVYSVVPLSEQELTALSRVFATKMNKTKLNIQNHIDKSLLGGVKVVIGTR
                     IYDDSLKTKLKDMERQIKA"
     gene            complement(5154..5666)
                     /gene="atpF"
                     /locus_tag="U0342_001611"
     CDS             complement(5154..5666)
                     /gene="atpF"
                     /locus_tag="U0342_001611"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit B"
                     /protein_id="HEM2422957.1"
                     /translation="MLQPHLVIGSAFTFGDAFFTLFAFAILLVLIRIYAWKPLMGVMK
                     EREEHIGSEIDAAEESRAQAEQLLAEQKSVLQQARVESQTMIENAKQLGEKEREEIVK
                     TARRESERIKEEAKSDIAREKEDAISALREQVGSLSVLIASKVIEKNLDEKEQSNLIQ
                     DYIERLGDDK"
     gene            complement(5754..5972)
                     /gene="atpE"
                     /locus_tag="U0342_001612"
     CDS             complement(5754..5972)
                     /gene="atpE"
                     /locus_tag="U0342_001612"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit C"
                     /protein_id="HEM2422958.1"
                     /translation="MSLGVIAAAIAVGLGALGAGIGNGLIVSKTVEGVARQPEARSML
                     QTIMFIGIGLVEALPIIAVVIAFMVLNK"
     gene            complement(6044..6760)
                     /gene="atpB"
                     /locus_tag="U0342_001613"
     CDS             complement(6044..6760)
                     /gene="atpB"
                     /locus_tag="U0342_001613"
                     /EC_number="7.1.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466058.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="F0F1 ATP synthase subunit A"
                     /protein_id="HEM2422959.1"
                     /translation="MEEEFPTISLLGIDFNLSNILMITVTCVIVLLIAIICTRNLQRR
                     PTGKQNFIEWVMDFVRGIINSNMDWKTGGRFHVLGITLLMFIFVANMLGLPFQIAIND
                     EVWWRSPTADPIVTLTLAIMVLGLTHYYGIKMRGFKHYFVGTYFSPMKFLFPLKLVEE
                     FANTLTLGLRLYGNIFAGEVLLTIIATQLAHMNIFVGVLAIIPALLWQGFSIFIGAIQ
                     AYIFTMLTMVYMSHKVSDEH"
     gene            complement(6767..7165)
                     /locus_tag="U0342_001614"
     CDS             complement(6767..7165)
                     /locus_tag="U0342_001614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466059.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP synthase subunit I"
                     /protein_id="HEM2422960.1"
                     /translation="MLESLIGMYHRHQKYMVLFIAVCLCGWFLTPYIHIFLGLKLGLI
                     VGWFNYWLLMRRTQSMTRALAENRSFYGMGMPFRMGSVLFATIIATQLPEFFHVYSMV
                     IGLGLAYAIIFLDFFVYSMYRRKKFLKREG"
     gene            complement(7359..7526)
                     /locus_tag="U0342_001615"
     CDS             complement(7359..7526)
                     /locus_tag="U0342_001615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422961.1"
                     /translation="MTEVLVAVKWTKIILAWQSKKQIDFEIKKISKIIGYSFMDGSDC
                     GTISNRCTYNL"
     gene            complement(7996..9135)
                     /gene="wecB"
                     /locus_tag="U0342_001616"
     CDS             complement(7996..9135)
                     /gene="wecB"
                     /locus_tag="U0342_001616"
                     /EC_number="5.1.3.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466060.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine 2-epimerase
                     (non-hydrolyzing)"
                     /protein_id="HEM2422962.1"
                     /translation="MAKIKVMSIFGTRPEAIKMAPLVLALEKEPETFESTVVITAQHR
                     EMLDQVLEIFDIKPDIDLDIMKKGQTLAEITSRVMNGINEVIAAENPDIVLVHGDTTT
                     SFAAGLATFYQQKMLGHVEAGLRTWNKYSPFPEEMNRQLTGVMADMHFSPTKQAKENL
                     LAEGKDPGTIFVTGNTAIDALRTTVQKDYHHPILENLGDNRLILMTAHRRENLGEPMQ
                     GMFEAVREIVESREDVELVYPMHLNPAVREKATKILGGHERIHLIEPLDAIDFHNFLR
                     KSYLVFTDSGGVQEEAPGMGVPVLVLRDTTERPEGIEAGTLKLIGTNKENLIKEALNL
                     LDNKENHDKMAHAVNPYGDGFAANRILAAIKSHFEETGRPEDFIV"
     gene            complement(9253..9882)
                     /gene="upp"
                     /locus_tag="U0342_001617"
     CDS             complement(9253..9882)
                     /gene="upp"
                     /locus_tag="U0342_001617"
                     /EC_number="2.4.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466061.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil phosphoribosyltransferase"
                     /protein_id="HEM2422963.1"
                     /translation="MANVHVINHPLVQHKLTIIRDKNTGTKAFRELVDEVATLMAYEI
                     TRDMELEDIQVETPLQTTTAKTLTGKKLGIVPILRAGLGMQDGILKLIPAAKVGHVGL
                     YRDHDTLEPVEYFVKLPSDVEERLFIVVDPMLATGGSAIMAIDCLKKRGARNMKFMCL
                     VAAPEGVKALQDAHPDVEIYVAGLDEKLDENGYIRPGLGDAGDRLFGTK"
     gene            complement(10020..11261)
                     /locus_tag="U0342_001618"
     CDS             complement(10020..11261)
                     /locus_tag="U0342_001618"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466062.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydroxymethyltransferase"
                     /protein_id="HEM2422964.1"
                     /translation="MVYLQKQDKEVFDAIKLELGRQRANIELIASENFVSEQVMEAMG
                     SVLTNKYAEGYPGKRYYGGCEFVDIVEDLARDRAKKLFGAEYANVQPHSGAQANMAVY
                     HTVLEPGDTVLGMNLSHGGHLTHGSPVNFSGVLYNFVEYGVREDTKEIDYDIVREAAL
                     KHKPKMIVAGASAYPRKIDFAKFREIADEVGAYLMVDMAHIAGLVAAGLHQNPVPYAD
                     FTTTTTHKTLRGPRGGMILAKAEWEQKLNKSIFPGIQGGPLMHVIAAKAVAFGEALQP
                     EFTAYCEQIIRNSKKLAETLQANDVAVLTGGSDNHLLLIDLKPLGLTGKAAEKVLDEV
                     GITVNKNTIPFETESPFVTSGIRVGVAAVTTRGFDEVAIEKVGVLISEVLHNLENEEV
                     LADVKARVATLTNEYPLYPSL"
     gene            complement(11397..11804)
                     /locus_tag="U0342_001619"
     CDS             complement(11397..11804)
                     /locus_tag="U0342_001619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466063.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight protein arginine
                     phosphatase"
                     /protein_id="HEM2422965.1"
                     /translation="MKVLFVCTGNTCRSPLAEKILQNLRPDLDVRSAGTRALDGDAIS
                     ENSRQILAQMNLPTTHQAKKVKKADIDWADQIYVMTQNHQAELKSLFPKASDKIQLIS
                     EDKTDIPDPYGGSIEQYEITYYELKSAISERFL"
     gene            complement(11801..12838)
                     /locus_tag="U0342_001620"
     CDS             complement(11801..12838)
                     /locus_tag="U0342_001620"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonylcarbamoyl-AMP synthase"
                     /protein_id="HEM2422966.1"
                     /translation="MQTIHWNINNQQSNQVIFQEAAKLLRSGECVAFPTETVYGLGAD
                     ATNQAAVQKIYEAKGRPSDNPLIVHIARREQMDPFVASYPVKAIQLMEKFWPGPLTVI
                     LPLKKDSLATNVSAGLSTVGVRMPEHPVSLALIDAANIPVAAPSANRSGKPSPTTASH
                     VIEDLDGKIAGIIDGGATGVGLESTVIDCSLDIPVILRPGGVTKEQIEQIIGPVDIAT
                     NNTKETEKPKAPGMKYTHYAPKAPVYLIEGSIQFWQSEINKAEAANKKLGILATKELI
                     NQLNTSGTIEITGSINALDEIATSLYKGLRAFDHADVDVIFAEVYPETELGAAIMNRL
                     EKAAGNRRIRE"
BASE COUNT         3729 a         2745 c         2333 g         4180 t
ORIGIN      
        1 aatctagctt gtgttacatg attcttcttg atgaattttt cataattaat agcttggagt
       61 gcccaaaaag taattacaat aaatagtaaa tgtgaaatga tgatgacata tggtgattcc
      121 ataataatat tatacatacg ttctctcctc atatttcgct actactcatt ttaacaaata
      181 cctctagaaa aaaacagtta atacacttat gcatataaaa aaacttcccg gcactgtggc
      241 caggaagtaa tatgattatt aattgtgttc ttttgcatga attctgttga tggctctttg
      301 tagtgccagc tgagccatta cttcgtccac tttttgttct tttgctcggc taagttcttc
      361 ttctgcacgt tgttttgctt tttcagcgcg atcaatatca atatcttgtt cacgttcagc
      421 agtatccgcg agaatattaa cttcttcacc gtttacttcc ataaagccac cattgacagc
      481 gacccattcc tcaccagact caacttttaa acgaacgatg tcgattttaa gtggagcaac
      541 tagtggaaca tggccaggta aaataccgag ttcacctgct tttgttctag caataaccat
      601 ttgagcaacg ccttcataaa cagggccgtc tggagtaaca atactaacat ttaatgaacc
      661 catacgtatt tcctcctgtt tttatcagac ttcaacgccc atgtcttttg ctttttcaag
      721 aacatcctca atgcgtccaa ctgaacggaa tgcatcttca ggaatatggt cgtattttcc
      781 ggctaatagg tctttgaatc ctttaactgt ttctttaaca ggaacataag aacctttttg
      841 acctgtaaat tgttctgcaa cgtggaaatt ttgtgataag aagaattgta cacgacgcgc
      901 acgggaaacg gattgtttat cttcgtcaga taactcatcc atacctaaga ttgcgatgat
      961 atcttgtaat tctttatatc tttgtaataa acgctgtact tccgttgcta ctgcatagtg
     1021 ttcttctcca acgatatcag gagaaagcgc acgagatgta gaagcaagtg gatctaccgc
     1081 tggataaata ccttgttccg ttaatttacg ttccaagtta gttgttgcat ctagatgggc
     1141 gaaagttgta gccggagccg ggtcagtata gtcatcggct ggtacataaa tcgcttggat
     1201 agaagtaaca gatccaacgt tagtagatgt aatacgttct tgtaattgac ccatttcagt
     1261 agctagggtt ggttggtaac ctaccgcaga tggcatacga cctagtaaag ccgaaacctc
     1321 tgaaccagct tgtgtgaaac ggaaaatatt atcaatgaat aaaagtacat cttgatgttc
     1381 ttcatcacgg aaatattcag caattgttaa accagttaag gcaacacgca tacgcgcacc
     1441 tggtggctcg ttcatttgac cgaataccat cgctgttttt tcaataacac cagaatcttt
     1501 catttcaaag taaaggtcgt tcccttcacg agtacgttct ccaacgcccg cgaacactga
     1561 aataccaccg tgttcttgtg cgatattatg gataagctct tgaattagaa cggttttacc
     1621 tacacccgca ccaccgaaca gtccgatttt accacctttt aggtatggcg ctaacaagtc
     1681 aactacttta attcctgttt caagaatttc tgttgttgtt gctaattgat cgaaagttgg
     1741 agcttcgcgg tgaattttgt tacgtttaat atcgcttgga agtggttcgt ccaaatcgat
     1801 ggtgtttcct aatacattaa atacacgacc aagagttact gtacctacag gaactgtaat
     1861 tgggctccca gtatcaataa cttccatacc tctttgaaca ccatctgttg atgccattgc
     1921 gattgtacga acaacgtcat cacctaattg gatggctact tctaaagtaa gttggctagt
     1981 tggtgcttct tctgcatcag atttatattc aataactagg gcattgtaga tttcaggtaa
     2041 gtttccacct tcaaatttaa cgtctacaac tggacccata acttggatta cttgtccttt
     2101 agacatgcaa ttattcctcc tcacttacct tcccatttat cgggacgtta caagaaacgc
     2161 cgacttctat tctagtgcgg ctgctcctcc gacgatttcg gtaatttctt gcgtgatcgc
     2221 agcttggcga gcacggttat attgtagtga taagtcactg attaaatcgg atgcattgtc
     2281 tgtcgcgctt ctcatggcag tcatacgagc agcatgttca gcggctttgg catccagaag
     2341 tgctccgaaa attaggcttt ccacatattg cggcaataat acttccagaa tttcttgttc
     2401 ggaaggctcg aattcgtatg tagttaaatc tacatctgtt tccttacctt tttcgtgaaa
     2461 ttctgtcagt ggtagtagtt gctcttttct cagttcgcta gaaatagaat taatatggtg
     2521 attataataa atgaaaacct cgtcataaac accatcttca aacatttgaa ctgtgttact
     2581 agcaatatct ttaatttccg caaatatcgg gtgatctgta atgccttgta cttctaaaac
     2641 cacgttcatt tggcgcgctt tgaagaagtc tcgagcagat ctacctacag tgattattgc
     2701 atattcatca cttgacgtat gctttttatt aatttcttga aatacttctt tgattacaga
     2761 actattgtaa gaacctgcaa gtccagtatc agaagtaagt acgatataac cagtacggtg
     2821 aacaggtcta gatacaagca ttggatgatc actactgtta ccagtgctag caacatgtgt
     2881 tactacgtct ttaattttag aaacgtaagg ctcatatgaa cgagcgtttg attctgcacg
     2941 acctagtttt gctgctgaaa ccatttgcat tgcttttgta atttgacttg ttttacgtgt
     3001 agaagttatt cgttgtttaa tatcgattaa agatgccaaa gattttcacc acctttgaat
     3061 ttattccgag tctaaattat ttttcttcag aaggaacaaa tgtattttta aattctttca
     3121 atgctgcttc aagtttcgct tcgtcaggaa gttttttcgt tgtacgaatt tcttccaaaa
     3181 gctctgggtg attatgatca aaccatgtat tcatttcgga ctcaaaacgc agtacatcat
     3241 gaactggtac atcatccaga tatttatgaa caagtgcata aagaatcaat acttgttttt
     3301 caactttcaa aggtttgtgc aaatcttgtt ttagaacttc tactgtacgt ttaccacgtt
     3361 ctagtttcgc acgagtagct gcatctaggt cagagccgaa ttgtgagaag gattctagct
     3421 cacggtaagc ggcaaggtct agacgaagtg ttccggcaac agttttcatt gctttaattt
     3481 gcgctgatcc acctacacga gatacagaaa gaccggcatt gatcgctgga cgtactccgg
     3541 agaagaataa atcagattgc aagaagattt gtccgtctgt aatcgagata acgtttgtag
     3601 gaatataagc agagatatct ccggcttgtg tttctacgaa tggaagagcc gtaatggatc
     3661 cgccacctaa gctatcattt aattttgcag cacgttcaag taaacgggag tgcaagtaga
     3721 aaacatcccc tggatatgct tcacggcctg gaggacgacg aagtaataga gacagctcac
     3781 gataagcggc tgcttgtttg gataaatcat catatacgac taaaacgtgt ttgccgttgt
     3841 acatgaattc ttctgccatt gcaacaccag cataaggagc caagtataga agtggcgctg
     3901 gttgagatgc tgctgcagtt acgacgattg tgtaatctaa tgcgccgtga tgacgtaatg
     3961 tttctacggc attacgtaca gtagattctt tttgaccgat agcaacataa atacaaatca
     4021 tgtcttggtc agcttggttt agaatagtat caattgctac agatgtttta ccagtttggc
     4081 ggtcaccgat gattaactca cgttgaccac gaccaattgg aacaagtgca tcaatcgctt
     4141 taatacctgt ttgtaatggt tcatttactg attgacgttg cataacacca ggtgctactg
     4201 cttcaatcgg acgagttcca gttgtttcaa taggtcctaa accatcaact ggttgaccta
     4261 atgagttaac tacacgccca ataagcgctt cgccaacagg aacttccatg attttaccgg
     4321 tacgacgaac ttcatcgcct tcacggattt cagtgtaagg acctagaata atgataccaa
     4381 catcatttgt ttctaagttt tgggccatac ccattacacc atttgagaac tctaacaatt
     4441 caccagccat tgcattatcg agtccatgag cacgcgcaat accgtcacca atgtaggtaa
     4501 ccgtaccaac atcactcact tttagttcag attgataatt ttcaatctgc tgttttatga
     4561 ttgagctgat ctcttcagcc ttaatgctca ttgatttcac ccctcgttaa acggaaacta
     4621 ggctttaatt tgccgttcca tgtcctttaa tttcgttttt agactgtcat catatatacg
     4681 ggttccaata accactttga ctccaccaag aagggattta tcaatgtgat tttgaatgtt
     4741 taactttgtt ttgttcattt tcgtagcaaa tactctcgag agcgccgtaa gttcttgttc
     4801 ggaaagtgga acaacagaat aaacatctgc atccgcaact ccattcaagt cgtttacgcg
     4861 tttttggtaa acgtccgcaa taacagaaag ataatcttct ctgctacggt caattaaaag
     4921 ataaataaaa tctcttaatg tcggattgat tttttcaaaa acagcgctgg caagattttt
     4981 cttttgctcg gtcgtgaaag taggattttc aagtagtttt acaaaatctt cattagcttt
     5041 taaggccgct tttaattcag ttagttcttc tgaaaaaacg tcgactaaat ctttatcttg
     5101 ggctacttga aaaagcgcat tggcatagcg acctgcaact tccaaatctt tactcatttg
     5161 tcatccccta gcctttcgat ataatcttgg ataaggttag attgttcttt ttcatccaga
     5221 tttttttcga tgactttcga tgcaataaga acagataagg aaccgacttg ttcgcgaaga
     5281 gcagaaatag catcttcttt ttcacgtgca atatcggatt ttgcttcttc ttttatacgt
     5341 tctgattcac gtctagcagt tttgacaatt tcttcgcgtt ctttttcacc aagctgtttt
     5401 gcattctcaa tcattgtttg agattccaca cgagcttgtt gtaaaacact tttttgttca
     5461 gcaagtaatt gttctgcttg agcacggctt tcttccgccg catcaatttc agaaccaata
     5521 tgctcttcac gctctttcat aactcccata agaggtttcc aagcataaat tcggattaaa
     5581 actagcaaaa tcgcgaaagc aaaaagtgtg aagaatgcat caccaaacgt aaatgcggaa
     5641 ccaattacta aatgtggttg taacacgcca gtttcactcc tttctataca ttcgcttgaa
     5701 ttattcgttc aaaacgaaag agatgaggtt ttatttcctc aacttccttc aaattattta
     5761 ttaagaacca tgaacgcaat aactacagcg atgataggaa gggcctcaac aagaccgata
     5821 ccaatgaaca tgattgtttg tagcatagaa cgcgcttctg gttgacgcgc aacaccctcg
     5881 acagtttttg atacgataag accgttacca atacccgcac ctaatgcacc taatccaaca
     5941 gcgatagcag ctgcaataac acctaaagac atataattat cctcctaatt tttctaaata
     6001 ttatttttta ttacttttat aaatgactta tttgaaagtt agtttaatgt tcgtcactta
     6061 ccttatgcga catataaacc atggtcagca tagtgaaaat gtacgcttga attgccccaa
     6121 tgaaaattga gaatccttgc catagtaacg caggaattat tgctagcaca cctacaaata
     6181 tgttcatatg agcgagttgt gttgcaatga tggttaacaa aacttcgccg gcgaaaatat
     6241 taccgtaaag acgtaaacca agcgttaaag tattagcaaa ttcttctact aatttaagtg
     6301 ggaataaaaa tttcattgga ctaaagtaag taccaacaaa atagtgcttg aaaccacgca
     6361 ttttaatacc atagtaatgc gttaagccaa gaaccattat cgcaagtgtt aatgtgacaa
     6421 ttggatccgc tgtaggtgaa cgccaccata cttcatcgtt aatcgcgatt tgaaatggca
     6481 gtcctagcat attagctacg aaaataaaca ttagtagcgt aataccaagt acatggaatc
     6541 tcccaccggt tttccaatcc atattactat taataatacc tctgacaaaa tccataaccc
     6601 attcaatgaa gttctgcttt ccggtaggtc ggcgttgcag atttctggta cagataatgg
     6661 ctattagaag aacgatgaca caagtcacag taatcatcaa aatattagat agattaaagt
     6721 cgatccctaa taggcttatc gttggaaatt cctcttccaa ttaggttcac ccctctcttt
     6781 ttaaaaactt ttttctgcgg tacatggaat acacaaaaaa atctagaaaa ataattgcat
     6841 atgcaagccc aagtccgatt accatgctat aaacatgaaa aaattccggc agttgcgtcg
     6901 ctataatagt agcaaataac acgctcccca ttctaaatgg cattcccata ccataaaaag
     6961 aacgattttc agccaaagct ctagtcattg attgtgtacg cctcattaat agccagtagt
     7021 taaaccagcc gacgattaaa cccaacttaa gtcccaagaa aatatgtata tatggggtta
     7081 aaaaccatcc acaaagacaa acagcaataa aaagaaccat atacttttga tgacgatgat
     7141 acatgccaat tagcgattct aacattcggg gcgcaatcct ttctttttca aaagattttt
     7201 ctttccagat gaccattttg aaatctcagg gagtaagttt ggtttgtgaa aacaagcaca
     7261 ttttccccaa ttcatcccaa tcccaaacac acatgaaagc cttatcagcg tgtcagttct
     7321 tagcatacaa cagccaaaag agaaaagtca atacactttc acaaattgta agtacatcta
     7381 ttactaatag taccacaatc ggacccatcc ataaaagaat agcctattat ttttgagatt
     7441 tttttgattt caaaatctat ctgtttctta gattgccacg ccagaattat ttttgtccat
     7501 ttaacagcaa ccaacacctc cgtaatcgtt gagaaaacct atctcctgtt cgtgtgatgt
     7561 ttcacaaaaa aggcgataaa aactctcttt cgcacaaata aaaaaacttc taccactatt
     7621 ggtaaaagaa ttcgatacga ttattcgcaa atttcgcgac cgaaagttct tttcccaaga
     7681 aaaagaacgg aaaaaacagc cggactcatt tatcatgagt tgcattttga tatagagtgc
     7741 ccgtataaat tccaattcag tcaacgcaaa cctagcgtcg gcgggattgt agtgaatact
     7801 gagcgcagtc ttctatccct atgctaaaaa caagctattt tttgggctct tatattaata
     7861 acattgacca tcttatcaca tgtaacataa aagaactagt gaaaatcgag cgtgtaacat
     7921 atctgtaaca ataaggcgct ttcattctga aaaaagagga aaactagact tcaacgccta
     7981 gttttccact gtgttttaca cgataaaatc ttctggtcga ccagtttctt caaagtgact
     8041 cttgattgct gctaaaattc gattagctgc gaatccgtcg ccatatggat ttaccgcgtg
     8101 tgccatttta tcatgatttt ctttattatc cagcaaattc agtgcttctt taattagatt
     8161 ctctttattt gttccaatta gtttcaacgt cccggcttcg attccttctg gacgctccgt
     8221 cgtatcacgt aaaactaaaa ctggcacgcc catgcctgga gcttcttctt gtacgccgcc
     8281 tgaatcggta aaaacaagat aagacttgcg caagaaatta tgaaaatcaa ttgcgtcgag
     8341 tggctcgatt aaatgaatgc gttcatgtcc acctaagatt ttcgtcgctt tttctctaac
     8401 ggctggattc aaatgcatcg gataaacgag ttcaacatcc tcacgacttt ccacgatttc
     8461 tcgaaccgcc tcaaacatcc cttgcatcgg ttcgcctaaa ttttccctgc ggtgagccgt
     8521 cataagtatt aaacgattgt cgccaagatt ttccaagatt ggatggtggt aatctttttg
     8581 cacagttgtt ctaagggcat caatcgccgt atttccagtc acaaaaatag tacccggatc
     8641 ttttccttcc gcaagcagat tttctttcgc ttgtttagtt ggagaaaagt gcatatccgc
     8701 cattacacca gttaactggc gattcatttc ttctggaaac ggcgaatatt tattccatgt
     8761 tctaagtcca gcttcgacat gtccgagcat tttttgttga taaaaggtag ctagtcctgc
     8821 tgcaaaactt gttgttgtat cgccgtgaac tagaacgata tccggatttt cggctgcaat
     8881 aacttcatta attccattca ttacacgcga agttatttca gctaaagttt ggcctttttt
     8941 cataatatct aagtcaatat ctggtttaat atcaaaaatc tctaagactt gatctagcat
     9001 ttcacggtgt tgagctgtaa tcactaccgt tgactcaaat gtttctggtt ctttttctag
     9061 tgccaaaacg agtggtgcca tttttattgc ttctggtctt gtcccaaaga tactcattac
     9121 tttgatttta gccaattgcg aacctcctta taaaaaaact cctcagaaat agctcgacaa
     9181 aaaatttccc agcctgttaa aaagcagtac tgtttataat tccttatctc actaaaccga
     9241 ggagattgtt aattatttag ttccgaataa tctatcgcca gcatctccta agcctggacg
     9301 gatataacca ttttcgtcta acttctcgtc taaaccagct acgtagattt ctacgtctgg
     9361 atgtgcgtct tgaagggctt taacgccttc aggagctgct actagacaca tgaatttcat
     9421 gttacgagcg ccgcgttttt tcaagcaatc gatagccata attgcggatc cgccagttgc
     9481 aagcattgga tctacaacga tgaaaagacg ttcttctacg tcagaaggta gttttacaaa
     9541 atattcgact ggttctagtg tatcatggtc acgataaaga cctacatgcc ctacttttgc
     9601 tgcaggaata agttttaaaa taccatcttg cataccaagt ccagctctta aaataggaac
     9661 aatccctaat tttttaccag taagtgtttt cgcagttgtt gtttgtagtg gtgtttctac
     9721 ttggatgtct tcgagttcca tatcacgtgt aatttcgtac gccattaatg tagcgacttc
     9781 atctacaagt tcgcggaatg cttttgttcc cgtattttta tctcgaatga ttgttaattt
     9841 gtgttggact agtgggtgat taattacgtg tacatttgcc attgattagt tcgctccttt
     9901 gatattgaaa atttccttct cttattgtat cagaacaaga cacaagtgca aggattaatt
     9961 tgctatacat gaaaaaaacc ggttttctct attttataga aaaaaccgga tcacttattt
    10021 tataaacttg gataaagcgg atattcattt gttaaagtag ccacgcgtgc ttttacatct
    10081 gcgagaactt cttcattttc taaattatgc agtacttctg aaataagtac accaactttt
    10141 tcaatcgcaa cttcatcaaa tccacgagtg gtcactgcag caacacctac acggatacca
    10201 cttgtgacaa atgggctttc cgtttcgaat ggaatggtat ttttattcac ggtaatacca
    10261 acttcatcta atactttctc cgctgctttt cctgttaagc caagtggttt taaatcaatt
    10321 aataataaat gattatccga accacctgtt aaaacagcaa catcattcgc ttgaagtgtt
    10381 tctgctaatt ttttagagtt acgaataatt tgttcacagt acgccgtgaa ttcaggttgt
    10441 aacgcttcac caaacgccac tgctttcgct gcgattacgt gcattaacgg tccaccttgg
    10501 attcctggga aaatcgattt atttaatttt tgttcccatt ctgctttggc taaaatcatt
    10561 ccgccgcgag gtccacgaag cgttttatgg gtagttgtcg ttgtaaaatc agcataagga
    10621 actggatttt gatgcaagcc agcagcaaca agaccagcaa tatgcgccat atctaccatt
    10681 aagtatgcgc caacttcatc agcaatttcg cggaatttag caaaatcaat tttacgtgga
    10741 taagcacttg cgccagctac aatcattttt ggtttatgtt ttaaagctgc ttcacgaaca
    10801 atatcgtaat caatttcttt cgtatcttca cgaacgccgt attcaacaaa attgtataaa
    10861 acaccgctga aatttactgg gctaccatgt gttaaatgcc caccatgtga aaggttcata
    10921 ccaagaacag tatcgcctgg ttcaagcact gtatgataaa ctgccatatt cgcttgagca
    10981 cctgagtgtg gttggacatt cgcatattca gcgccaaata attttttcgc gcggtcgcgt
    11041 gctaaatctt ccacaatatc cacgaattca catccgccgt aatagcgttt ccctgggtaa
    11101 ccttctgcat atttattcgt taatacagat cccatagctt ccattacttg ctcactaaca
    11161 aaattctcag atgcgattaa ttcgatattc gcgcgttgtc taccaagctc taacttaatt
    11221 gcatcaaaaa cttccttatc ttgcttttgt aaatagacca tctgtggacc ccatcctttt
    11281 ctgataaatt tttcaagtga actgttatgt attatcttta ataattactt aaatcgggta
    11341 gaaaagcaag cattttggaa taaaaaaacg caatttccga tagtgaagcg cttcacttat
    11401 aaaaaacgtt cggaaattgc actttttagt tcgtaatagg tgatttcgta ttgctcgatt
    11461 gatccaccgt aaggatctgg aatatctgtt ttatcttcgg aaattagttg aattttatcg
    11521 ctcgcttttg gaaaaaggct ttttagttcc gcttgatgat tttgagtcat tacgtagatt
    11581 tggtctgccc aatctatatc tgctttttta acttttttag cttggtgcgt tgttggcaaa
    11641 ttcatctgcg cgagaatttg acgtgagttt tcagagatgg catccccgtc cagagcacgt
    11701 gtcccagccg aacgaacatc taaatccgga cgcaagttct gcaagatttt ttcagctaaa
    11761 gggcttcggc acgtatttcc tgtacaaaca aataatacct tcattcgcga atcctcctgt
    11821 tgccagcagc tttttctaat cggttcataa tcgctgctcc aagttccgtt tctggataca
    11881 cttccgcaaa aatcacatct acatcagcat ggtcgaaagc ccgtaaacct ttgtaaagac
    11941 ttgtagcaat ttcgtccaat gcatttatac tgccagttat ttcgatggta ccgctcgtgt
    12001 ttagttgatt tatcagttct tttgtcgcca aaataccgag ttttttattc gcagcttccg
    12061 ctttatttat ttcactttgc caaaattgga tagatccttc tattagataa actggcgctt
    12121 tcggggcata gtgcgtgtat ttcatgccag gtgcttttgg tttttccgtt tctttcgtgt
    12181 tgtttgtcgc tatatcaaca gggccaatta tttgttcaat ctgttctttt gtaacaccgc
    12241 ctgggcgcag aataactggg atatctaaag aacaatcaat aacggtggat tctaaaccta
    12301 caccagttgc gccgccatcg ataattccgg ctatttttcc atctaaatct tctattacat
    12361 gactcgccgt cgtcggactt ggttttcctg aacgattcgc gcttggagcc gcaacaggaa
    12421 tattcgctgc atctatcaat gctagactaa cagggtgttc cggcatacgg acgcctactg
    12481 tggataaacc cgcagaaaca ttagttgcca aactatcttt tttcaatgga agaataaccg
    12541 ttagcggacc cggccaaaat ttttccatga gctggatggc ttttactgga taacttgcaa
    12601 caaatggatc catttgttca cgacgggcga tgtggacaat taatgggtta tctgacggac
    12661 ggcctttcgc ttcatatatt ttttgaacag cagcttggtt agttgcgtct gcaccaagac
    12721 cgtacactgt ttcagttgga aaagccacgc attcaccgct tcggagtaat ttggctgctt
    12781 cctgaaagat tacttggttt gattgttggt tatttatgtt ccaatgaatg gtttgcatga
    12841 attccggtcc cctttacata acttctatta tattttaacg ttttccgcct tatttttaca
    12901 gtattgtttt ttaaaacctg taaatcgcta tttttgaaca aaagttatcc ccaaactgtg
    12961 gataataact ttgtcaatgg ggataac
//
LOCUS       DASEAA010000069        12919 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.069, whole genome shotgun sequence.
ACCESSION   DASEAA010000069 DASEAA010000000
VERSION     DASEAA010000069.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12919)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12919)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12919
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.069"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..184
                     /locus_tag="U0342_001621"
     CDS             <1..184
                     /locus_tag="U0342_001621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422967.1"
                     /translation="EKNKQFGTAYLKFLKVLFDKMHYQTKQYYLSYYRRATNAVYKAV
                     GLNSLNPIAKSYKLYF"
     gene            complement(233..1120)
                     /gene="galU"
                     /locus_tag="U0342_001622"
     CDS             complement(233..1120)
                     /gene="galU"
                     /locus_tag="U0342_001622"
                     /EC_number="2.7.7.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701880.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UTP--glucose-1-phosphate uridylyltransferase
                     GalU"
                     /protein_id="HEM2422968.1"
                     /translation="MRVKKAVIPAAGLGTRFLPATKAMPKEILPIVDKPTIQYIVEEA
                     VASGIEDILIVTGKGKRAIEDHFDSVPELENNLREKNKLELLHLVEQTTNINLHFIRQ
                     AKPKGLGDAILQAKGFVGNEPFIVMLGDDIVESKIPCSKQLMNQYEKTHSSVIGVQTV
                     PHEETYRYGIIDPINEYDKNLYNVKGFVEKPDPANAPSDLAILGRYLLTPQIFDFLET
                     QKPGAGGEIQLTDAINSLNEVQRVFAYDFEGQRFDVGDKFGFIQTTMQFALKHPEIKD
                     DVKDLINDLYNQIHKKDKK"
     gene            1344..2057
                     /locus_tag="U0342_001623"
     CDS             1344..2057
                     /locus_tag="U0342_001623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-C-methyl-D-erythritol 4-phosphate
                     cytidylyltransferase"
                     /protein_id="HEM2422969.1"
                     /translation="MIYAQILAGGKGTRMGNVSMPKQFLPLNGKPIIVHTVEKFILNT
                     RFDKILISSPKEWMNHAEDNIKKYISDDRIVVIEGGEDRNETIMNGIRFVEKTYGLTD
                     DDIIVTHDAVRPFLTHRIIEENIDAALETGAVDTVIEALDTIVESSNHEVITDIPVRD
                     HMYQGQTPQSFNMKKVFNHYQNLTPEKKQILTDACKICLLAGDDVKLVKGEIFNIKIT
                     TPYDLKVANAIIQERIAND"
     gene            2050..3075
                     /locus_tag="U0342_001624"
     CDS             2050..3075
                     /locus_tag="U0342_001624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alcohol dehydrogenase catalytic
                     domain-containing protein"
                     /protein_id="HEM2422970.1"
                     /translation="MINQVYRLVSERQFEVANVDESLTGDVVVVRPTHLSICAADQRY
                     YTGSRGKEMLSKKLPMALIHEGVGEVVYDATKEFKPGTKVVMIPNTPFENDPVIAENY
                     LRSSKFRSSGYDGLMQDYVFMRRDRVVALPDDINMKVAAFSELISVAVHAILRFEGKS
                     NANRESFGVWGDGNLGFITSLLLKNWYPDSKVYIFGKTPYKLDFFSFVDGAYAIDDVP
                     ADLVIDQAFECAGGMGSQYAVSQIIDVIKPEGTISLLGVSEYPIEFNSRMVLEKGLTV
                     YGSSRSGRVDFEKTVEFLSTNKRGVEYLQNLVGEVHTVHSIQDVIEAFEADLRSPWGK
                     SVMEWKI"
     gene            3218..4597
                     /locus_tag="U0342_001625"
     CDS             3218..4597
                     /locus_tag="U0342_001625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM2422971.1"
                     /translation="MKFAIIMPFYNAEKRLALSIDSIIKQSYSFLKHVEVLLINDGST
                     DGSGAIANRYATKYPNNIRVLTVPNGGPAKARNIGIHNVSEDTDFVGFLDADDIMSEN
                     MLASIVTFLNESNVSMLVPAFYYLDDFGSKKKISPHKLNYRFANGNRVADIEKEPEAI
                     HFYIGGTFLRYDCLKEFTFDESLYFAEDQLLITQFLLKYRSYGLIADAGYYYYRDLKQ
                     KGSLVSSSWKKPERYTPFLQKVYQTYLTDSKEIYGKVIPYVKYLIAYHAKLFFYKENT
                     YFREVLSESEQAIFVQELQKILQEVGASTIMELDTPLVVKEMMCSILQNGWPLQFETA
                     EKQDIPLVTVKENYRIGKTVAIELLLEEADIHDVKWVARTSFKEMPARLVKRKENQTI
                     WDVVVREKGTVEKAVFKLKPYQTKARLFYQDEEKDTPIADINIISSILGKLKRNRALK
                     RKFKQGGVS"
     gene            4597..5751
                     /locus_tag="U0342_001626"
     CDS             4597..5751
                     /locus_tag="U0342_001626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEM2422972.1"
                     /translation="MKLVQKVYYLLFRLVGFLPRKKDLVIFESFSGKQYSCNPRAIYE
                     YMEEHNPEYELLWSVNPKFVAVFEAYGVPYVKRFSISWLFKMGLAKYWISNSRLPLEL
                     PKPKKTIYVQTWHGTPLKKLGVDIDEVHIPGQTTEQYKADFVKEAQKWDYLISPNAYS
                     SAIFRRAFGFTGEMIESGYPRNDILFSTDKELKIANIKKELNIPEEKKVVLYAPTWRD
                     NDFYEAGRYKFDLKIDIAKMQEKLGNEIVLLVRMHYLVAEHFDFTQYGDFVRDASNHE
                     DIRDLYLVSDLLITDYSSVFFDYANLQRPMLFYTYDLAEYRDTLRGFYFDFEKNAPGP
                     LVETNEELMSELEKMLENPPKIEDSFLEQFCTWEDGHAAEKTVKIVFAEK"
     gene            5764..6915
                     /locus_tag="U0342_001627"
     CDS             5764..6915
                     /locus_tag="U0342_001627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEM2422973.1"
                     /translation="MKEVAIYIYMLAVKITGCLARIFPVKQKVVLLVSFPENSTAIIK
                     QMNEMKVTPKTVVFYDPRVDVTGFNFDFIQLKPKKIKHFISLMFHLNTAKVVITDNYF
                     VELAGLKERKNVTCIQIWHANGALKKFGWEDKAAQKRSARDKKRFQEVYRCFSKVLVG
                     SDEMAAIFQRSFLLEDSHMLKLGIPRTDNFFNQQQLKENAERTNTKLHLSNKKKLLYA
                     PTFRDEELHSTTLHLDIAKMKQALGNEYQLILKLHPSISNDLDEVVDDFVVYADKETP
                     IETILPAVDILITDYSSIPFEFALLEKPMIFFTYDLEEYDKARGLSDGFLATIPGPFV
                     HTTEELIQLIEQEAFDLEMVRAFAAKWNKYSDGHSSERFVSFLKEQLEK"
     gene            6980..7363
                     /gene="tagD"
                     /locus_tag="U0342_001628"
     CDS             6980..7363
                     /gene="tagD"
                     /locus_tag="U0342_001628"
                     /EC_number="2.7.7.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol-3-phosphate cytidylyltransferase"
                     /protein_id="HEM2422974.1"
                     /translation="MKKVITYGTFDLIHWGHIRLLERAKALGDYLIVAISTDEFNRIK
                     HKEAYHNFEHRKLILEAIRYVDEVIPESNWEQKLEDVKNRDIDIFVMGDDWEGEFDFL
                     KPYCEVVYLPRTDGISTSKIKDDLK"
     gene            7481..8971
                     /locus_tag="U0342_001629"
     CDS             7481..8971
                     /locus_tag="U0342_001629"
                     /EC_number="6.3.4.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate phosphoribosyltransferase"
                     /protein_id="HEM2422975.1"
                     /translation="MTNLFQDDSLTLHTDLYQLNMMKAYFDDGLHERRSVFEVFFRDM
                     PFDSGFVVFAGLERIIHYMQNLRFTETDIAYLHDELGFEGPFLEYLRNFKFKGNILAA
                     KEGEFVFKTEPILQVEASLAEAQLIETALLNIVNFQTLIATKAARIRSVIDDETFAEF
                     GTRRAQEMDAAIWGTRAAYIGGCDSTSNVRAGKIFGIPVSGTMAHAMVQAYRDELEAF
                     RSYAKTHFDSIFLVDTYDTLKSGVPNAIKVAKEMGDKINFIGIRLDSGDMAFLSKKAR
                     QMLDEAGFTEAKIFASSDLDEHTILSLKAQKAKIDSWGVGTKLITAYDQPALGAVYKM
                     AAIADENDILQDSIKLSSNTEKVSTPGKKKVYRIITNEDGLKAEGDYIALADESLENV
                     DKLTMFHPVHTYIMKTVENFTARELLVPIFQNGELVYDMPSLDEIKAYKEENLALLWD
                     EYKRTVRPEQYPVDLSVKCWKNKMRNIEKVRKSVQLHSPVELDMPF"
     gene            8983..9807
                     /gene="nadE"
                     /locus_tag="U0342_001630"
     CDS             8983..9807
                     /gene="nadE"
                     /locus_tag="U0342_001630"
                     /EC_number="6.3.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ammonia-dependent NAD(+) synthetase"
                     /protein_id="HEM2422976.1"
                     /translation="MEIRERILADMQVAETIDAHEEIRKSVEFLKAYLKKNTFLKSFV
                     LGISGGQDSTLTGKLAQMAISEMRAETGDDQYQFFAVSLPYGTQLDESDRQDALNFME
                     PDNRLTVNIKASVDASVAALAEAGVELSDFAKGNEKARERMKVQYAIAAMHKGVVVGT
                     DHSAEAVTGFYTKYGDGGTDINPLFRLNKRQGKALLKELGCPEHLYLKKPTADLEDNK
                     PALPDEVALGVTYDQIDDYLEGKEVPADAAAKIENWFIKTEHKRHMAITIFDDFWK"
     gene            9820..10128
                     /locus_tag="U0342_001631"
     CDS             9820..10128
                     /locus_tag="U0342_001631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2422977.1"
                     /translation="MKVGYGLLTAFYTHPGEKDNLVKILLEAAEGLDDYNTCIQYIVS
                     ESETEPDTVFVSEIWVDKGHHAASLDNPAVQETIARAKPMIKEIKQIQELDILGGKGI
                     "
     gene            10188..10592
                     /locus_tag="U0342_001632"
     CDS             10188..10592
                     /locus_tag="U0342_001632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464620.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2422978.1"
                     /translation="MKTLMIVCAGGATSSLMAQNVVKSATSEGMDAVLLFPDDVKYKD
                     SFREKYSERDLVVVMGPVGAITAGKFRDYKEQVDAVLVAPQVKYMYKTVEEVLGELSI
                     PCANIDSLDFGRMRGDKILTQGLALMDAKNSK"
     gene            10721..12277
                     /gene="guaA"
                     /locus_tag="U0342_001633"
     CDS             10721..12277
                     /gene="guaA"
                     /locus_tag="U0342_001633"
                     /EC_number="6.3.5.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine-hydrolyzing GMP synthase"
                     /protein_id="HEM2422979.1"
                     /translation="MFKIMKDFTEQEKIIVLDFGSQYNQLITRRIREFGVYSELHPHT
                     ITVEEMKALNPTGIIFSGGPNSVYDEDAFRADERIFDMGIPILGICYGMQLMTTHFGG
                     KVERAKDREYGKADIHVEKPNRLFAGLPTDQVVWMSHGDLVVEEPAGFEVTITSKSCP
                     IAGIADEERSLYGVQFHPEVRHSVYGNELLKNFALNVCGCKGDWTMENFSEVEIAKIQ
                     EIVGDKKVLLALSGGVDSSVVGVLIHKAIGDQLTCIFVDHGLLRKGEADQVMATLQGE
                     FNMNIIKVDAKKRFMDKLAGVSDPEQKRKIIGNEFIYVFDDEANKLDGVEFLAQGTLY
                     TDIIESGTATAQTIKSHHNVGGLPEDMQFKLIEPLNTLFKDEVRALGTELGMPDAIVW
                     RQPFPGPGLGIRVLGEITEEKLEIVRDSDYILREEIKNAGLEREIWQYFTALPNIRSV
                     GVMGDGRTYDHTVVVRAVTSIDGMTADWARIPWDVLEKISVRIVNEVDHVNRVVYDIT
                     SKPPATVEWE"
     gene            complement(12476..>12919)
                     /locus_tag="U0342_001634"
     CDS             complement(12476..>12919)
                     /locus_tag="U0342_001634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2422980.1"
                     /translation="LKGMTQKELGLALGFDKKTADIRIAQYESGTRKPKEDMINDLSK
                     IFDIRTDALTTPNIDSYVGLMHTLFSIEDTYGLKIIDGDDGISLKLDKNSKSFHTLYD
                     SFLSWQKEAEKFENEEITLEEYNHWRFNYPKVEAEKTKSKRDQSK"
BASE COUNT         4200 a         2035 c         2763 g         3921 t
ORIGIN      
        1 ggagaaaaat aaacaatttg gaacggctta tttgaaattc ttaaaagttc ttttcgataa
       61 aatgcattat caaacgaaac aatattattt aagttattat cgccgtgcga caaatgcagt
      121 gtataaagca gttggtttaa attctttaaa tcctattgcc aaaagttaca agctgtactt
      181 ttaaatgcat gtaaaaaaga gatgacaaaa ttttcatttg tcatctcttt ttttattttt
      241 tatctttttt atgaatttgg ttatataagt cgttaatcag atctttcaca tcatctttga
      301 tttcaggatg cttcaaagcg aattgcattg ttgtttggat aaagccgaat ttatcgccaa
      361 catcaaaacg ctgtccttca aagtcataag caaatacacg ttgtacttca tttagactat
      421 tgattgcatc ggttagttga atttcgcctc ctgcacctgg tttttgcgtt tctaagaagt
      481 cgaaaatttg tggtgttaat aagtaacggc caaggatagc taaatcagac ggtgcattag
      541 caggatctgg tttttccaca aaacctttca cattatataa attcttatca tattcattaa
      601 ttggatcaat aataccataa cgatatgtct cttcgtgagg gacagtttgg actccaatga
      661 cggaactatg cgtcttttca tattgattca ttaattgttt ggaacaaggg attttggatt
      721 caacaatatc atcacctaac ataacgataa atggttcatt acccacaaag ccttttgctt
      781 gaaggatggc atcaccaagt ccttttggtt tcgcttgacg aataaagtgc aaattaatgt
      841 tagtagtttg ttctactaaa tgtagtaatt caagtttatt tttttcccgt agattgtttt
      901 caagttcagg aacggaatca aaatggtctt cgatagcacg tttaccttta ccggttacaa
      961 ttaaaatatc ttctatgcca gatgctactg cttcttctac tatgtattga atagttggtt
     1021 tatccacaat tggtaagatt tctttaggca ttgcttttgt tgctggtaaa aagcgcgtgc
     1081 ctagaccagc agctggaatt acagcttttt ttactctcat atttaataat ctccttctaa
     1141 tctatattca tatagtccca cttaattata catagggggc tttgggttta caagttttta
     1201 atggtttagg ttataaaatg atgcgttttt acaaggtgtt taattaaaat acttcttagc
     1261 gcagatagaa gctagtttgt tatacaagtt ttatgttata atgtaacatg tcaatataaa
     1321 aaacagttaa aggagattag aggatgatat acgctcaaat tttagctgga ggaaaaggta
     1381 cgcggatggg taacgttagc atgccaaaac aatttctacc tctaaatggt aaaccaatta
     1441 ttgttcatac cgttgaaaaa tttattctaa atactcgatt tgataaaatt cttatttcct
     1501 caccaaaaga atggatgaac cacgctgagg ataatattaa aaagtatatt tctgatgatc
     1561 gtattgtagt cattgaaggc ggagaagacc gcaatgaaac aattatgaat ggtattcgtt
     1621 ttgtggaaaa aacatatggc ttaacagatg atgatattat cgtgacgcat gatgctgttc
     1681 gtccattttt aacacatcgt attattgaag aaaatataga tgctgcactt gaaacaggag
     1741 cagtagatac tgttattgaa gcacttgata caatcgttga atcaagcaat catgaggtga
     1801 ttacagatat tccggtcaga gatcacatgt atcaaggaca aacaccgcaa agcttcaata
     1861 tgaaaaaagt attcaatcac taccaaaatc taacaccaga gaaaaaacaa attctaacag
     1921 atgcatgtaa aatttgtttg cttgctggcg atgatgtgaa attagttaaa ggtgaaattt
     1981 tcaacattaa gattacgacg ccttatgatt tgaaagtagc gaatgcgatt attcaggagc
     2041 ggatagccaa tgattaatca agtatacaga cttgtgtcag agagacagtt tgaagttgcc
     2101 aatgtggacg aatcattaac aggtgatgtg gttgttgttc gaccgactca tttatctatt
     2161 tgtgcggcag atcaacgtta ctatacaggt tctagaggga aagaaatgtt atctaaaaaa
     2221 cttccaatgg cgcttattca tgaaggtgtt ggggaagttg tttatgatgc aacgaaagaa
     2281 tttaaaccag gtacaaaagt tgtcatgatt ccaaatacac catttgagaa tgatccagtc
     2341 attgctgaga actatttacg ttcgagtaaa ttccgttcta gtggttatga tggtttaatg
     2401 caggattatg tgttcatgcg tcgtgatcgt gtggtggcac tgccggatga tattaacatg
     2461 aaagtagctg ctttctcaga actgatttcc gtggcagttc acgctatttt acgctttgaa
     2521 ggtaaaagta atgctaaccg ggaatctttc ggtgtgtggg gtgatgggaa cttaggtttt
     2581 atcacttctt tactactaaa aaattggtac cctgatagca aagtttacat ttttgggaaa
     2641 acaccatata aattagactt cttttctttt gtggatggtg cttatgcaat tgatgatgtt
     2701 ccggctgatt tagttattga tcaagcattc gaatgtgctg gaggaatggg tagtcagtat
     2761 gcggtgagtc aaattattga tgtcattaaa ccagaaggaa ccatttcctt acttggtgtt
     2821 tcggagtatc cgattgaatt taattcacgt atggtacttg aaaaaggact aaccgtttat
     2881 ggaagtagtc gtagcggtcg tgttgatttt gagaaaacag tggagttctt atcaaccaat
     2941 aaacgtgggg tagaatatct gcaaaatctt gttggggaag ttcatacagt tcattccatt
     3001 caagatgtaa tcgaagcgtt tgaagctgat ttacgcagtc catggggcaa gagcgttatg
     3061 gagtggaaga tataataaaa cattggggag tttaggctgt aagctaatga atttgtttgc
     3121 taaagtattt taggaagcaa gaaaatcgaa tgtaagtatt cgatggtcat ttgctaaatc
     3181 cttaacttcc cagcttttat atggagaggg aaaaagaatg aaatttgcta ttataatgcc
     3241 tttttacaat gccgaaaaaa ggttagcact atccatagat agtataatta agcagtctta
     3301 cagctttttg aagcatgtgg aagtactgct tattaatgat ggaagcacgg atggaagtgg
     3361 cgctatcgca aatcgttacg ctacaaaata tcctaacaat attcgcgtgt tgaccgttcc
     3421 aaatggtgga ccggcaaaag cgcgtaatat cggaatacat aatgtaagtg aagatactga
     3481 ttttgttggt tttttagacg ccgatgatat aatgtcagag aatatgttag cgagtatagt
     3541 tacatttcta aatgagtcta acgtttctat gcttgtgcca gctttttatt acttagatga
     3601 ttttggaagt aagaaaaaaa tttcaccaca taaattaaat taccgttttg cgaatggaaa
     3661 tcgagttgct gatattgaaa aagaaccgga agcaattcat ttttatattg gcggtacttt
     3721 tttacgttat gattgtttga aagaatttac ttttgatgag tcgctttatt ttgcggagga
     3781 tcagttatta attacccagt tcttactgaa atatcggagc tatggcttga ttgcggatgc
     3841 ggggtattat tactatcgtg atctaaagca aaaaggttct ttagtaagtt cgtcttggaa
     3901 aaaaccagaa cgatacacgc cttttttgca gaaagtatat caaacctatt taactgactc
     3961 gaaagaaata tatggcaaag tgattcccta tgtgaagtat ctaattgcgt accatgcaaa
     4021 attgtttttt tataaagaaa atacttattt ccgggaagtt ttaagcgagt cggagcaagc
     4081 gattttcgtg caagaattac aaaagatttt gcaggaagtc ggagcaagta cgattatgga
     4141 attagacaca cctctcgtag taaaagaaat gatgtgctcg attttgcaaa atggatggcc
     4201 gctgcaattt gaaacggctg aaaaacaaga tattccactt gtgacagtaa aagaaaatta
     4261 tcgtatcggc aaaacagtcg cgattgaatt acttctagaa gaagcggata ttcatgacgt
     4321 gaaatgggtt gctcgcacgt cttttaaaga aatgccagct cggttagtca aacgaaaaga
     4381 gaatcaaact atttgggatg tcgttgtcag agaaaaaggc acagtagaaa aagctgtatt
     4441 taaattaaaa ccgtatcaaa cgaaagcgcg tcttttttat caagatgagg aaaaggatac
     4501 gcctatcgcc gacataaata tcataagtag catcttaggg aaattaaaac gaaatcgagc
     4561 gttaaagcga aagtttaaac aggggggagt atcctgatga agttagtaca aaaagtgtat
     4621 tatttgttgt ttagattagt gggattttta ccgcgaaaaa aagatttagt gatatttgaa
     4681 agcttttcag gtaagcaata tagctgtaat ccacgggcta tttatgaata tatggaggag
     4741 cataatccgg aatacgaatt attatggagt gttaatccaa aattcgtggc tgtttttgaa
     4801 gcttacggag ttccttatgt taaacgtttt tctattagct ggttatttaa aatggggctt
     4861 gctaagtatt ggatttctaa tagtagactt cctttagaac taccaaaacc gaaaaaaaca
     4921 atctatgtgc aaacttggca tggaacaccc ttaaaaaaat taggcgtgga tattgatgaa
     4981 gtgcacattc cagggcaaac aacggaacag tacaaagctg attttgtaaa agaagcacag
     5041 aaatgggact acttaatttc tcctaatgct tattctagtg ctatttttag acgggcattt
     5101 ggttttactg gagagatgat tgagtcggga tatccgcgga atgatatttt atttagtacc
     5161 gataaagagc tgaaaatagc taatattaaa aaagagctaa atatcccaga agagaaaaaa
     5221 gttgttttat atgcgccaac atggcgtgat aatgattttt atgaagctgg aagatataaa
     5281 tttgatttaa aaatcgatat cgcaaaaatg caagaaaaat tggggaatga gattgtttta
     5341 cttgttcgca tgcattattt agttgcggaa cattttgatt tcacgcaata tggtgatttt
     5401 gtccgcgatg cttcaaacca tgaagatata cgcgatttat acttagtgag tgatttgttg
     5461 attactgatt attcctctgt attttttgat tatgcgaatt tacagcgtcc tatgcttttt
     5521 tatacgtatg atttggcgga atatcgtgat acgttacgtg gcttttactt tgattttgaa
     5581 aaaaatgctc ctggtccgct tgtggaaacg aatgaagaat taatgagtga acttgaaaaa
     5641 atgcttgaaa atccacctaa aatagaagac agctttttgg agcagttttg tacttgggaa
     5701 gatggtcatg cagcagagaa aacagtgaaa atcgtttttg ctgaaaaata ggtggtggga
     5761 attttgaaag aagtagcaat ttatatttat atgcttgctg ttaagataac tggctgtttg
     5821 gcgaggattt ttccagttaa acaaaaagtg gtactgttag ttagctttcc ggaaaattcc
     5881 actgcaatta taaagcaaat gaacgaaatg aaagttacgc caaaaacggt tgttttctat
     5941 gatccaagag tggatgtgac cggttttaat tttgatttta tccaattaaa gccaaaaaaa
     6001 atcaagcact ttatctcgtt aatgttccat ctgaatacgg caaaagttgt cattacggat
     6061 aattatttcg tggaattagc tggattaaaa gaacgtaaaa atgtgacgtg cattcaaatt
     6121 tggcatgcga atggggcatt gaaaaaattc ggctgggaag ataaagcagc gcaaaaaaga
     6181 agcgcgcgcg ataaaaaaag atttcaagaa gtgtacagat gtttttcaaa agtgctcgtc
     6241 ggatcggatg aaatggcagc aattttccaa aggtcgtttt tactagaaga ttcgcatatg
     6301 ttgaagctag gaattccgag aacggacaat ttcttcaacc aacaacaatt gaaagaaaat
     6361 gccgaaagga caaataccaa attacatctt tccaataaaa agaaattatt atatgcgccg
     6421 acgttccgcg atgaggaact tcatagtact acgcttcatt tagatatcgc gaagatgaaa
     6481 caagcactcg gaaatgagta ccaattaatt ttaaaattac atccatctat tagtaatgat
     6541 ttagatgaag tagtggatga ttttgttgtc tatgcggata aagaaacgcc aatcgagacg
     6601 atactaccag ccgtagatat attgattact gattattcat ctattccatt tgaatttgct
     6661 ttattagaaa aaccaatgat ctttttcacg tatgatttag aggaatatga taaggctaga
     6721 ggtttgtcgg atggcttttt agcaacgatt ccggggccat tcgttcatac aacagaggaa
     6781 ctaatacaac taattgagca agaagcattc gatttagaaa tggttcgtgc ttttgcggcg
     6841 aaatggaata aatattcaga cgggcattct agtgagcgct tcgtttcctt tttgaaagaa
     6901 cagctagaaa agtagcactg ctaacaagta gagaaatttt tgttttcttg atatactact
     6961 aaagaaagta ggtgggctga tgaagaaagt aattacatat ggcacatttg atttgattca
     7021 ctgggggcat attcgtttat tagaacgagc aaaagcttta ggtgattacc ttattgtagc
     7081 catttcaacc gatgaattta atcgaatcaa acacaaagaa gcataccata actttgaaca
     7141 tcgcaaatta attttagagg cgattagata tgtcgacgaa gtgattccgg aaagtaactg
     7201 ggaacaaaaa ttagaagatg ttaaaaatcg tgatattgat atttttgtga tgggtgatga
     7261 ttgggaaggc gagtttgact tcttaaaacc ttattgtgaa gtcgtttatt taccacgaac
     7321 agacggtatt tctacttcta agattaaaga tgatttaaaa tagtcgtagc acaaaacagg
     7381 cagaccagta atgttcaatt attaggtggt gggcttgttt tgtgctatta ttatgtataa
     7441 ataataacgc aaagaactag ttatgatagg agcagaagaa atgacaaatt tatttcaaga
     7501 tgatagtcta acgctgcata cagacttata tcaactaaat atgatgaaag cgtattttga
     7561 cgatggactt catgagcgta gatcggtatt tgaagtgttt ttccgagata tgccatttga
     7621 ttcgggtttt gttgtgtttg cggggctaga acgaattatt cattatatgc aaaatttacg
     7681 ttttacagaa acggatattg cttatttaca cgacgaactt ggttttgaag gaccttttct
     7741 agaatattta cgtaatttta aatttaaagg aaatattctt gctgcgaaag aaggggaatt
     7801 tgtttttaaa acagagccaa tccttcaagt agaagcaagc ttggcggaag cacaattaat
     7861 tgaaacagct ttgcttaata ttgtgaattt ccaaacgctg attgcaacaa aagcggcgcg
     7921 aatccgttct gttattgatg acgaaacgtt tgcagaattc ggtacaagac gtgcacaaga
     7981 aatggatgcg gctatttggg gcacacgagc ggcttacatc ggcggttgtg attcgacgag
     8041 taatgttcgc gctggaaaaa ttttcggtat tcctgtgtct ggtacgatgg cacatgcgat
     8101 ggttcaagct tatcgcgacg aactagaagc atttagaagt tacgcaaaaa cgcattttga
     8161 ttcgattttc ttagtagata catacgatac gctaaaatct ggcgtaccaa atgcgattaa
     8221 agtggcgaaa gaaatgggcg ataaaattaa ctttatcggc attcgtttag atagcgggga
     8281 tatggctttc ttatctaaaa aagcacgcca aatgttagat gaggctggtt ttacagaagc
     8341 aaaaatcttt gcttcgagtg acttagacga acatactatt ttatcgttaa aagcgcaaaa
     8401 agcaaaaatc gattcttggg gcgttggcac aaaactaatc accgcttacg accaaccagc
     8461 attaggtgcc gtttacaaaa tggcggcaat tgctgatgaa aatgatattt tacaagattc
     8521 gattaaactt tcgagtaaca ccgaaaaagt gtcgactcct ggtaaaaaga aagtttaccg
     8581 gattattacg aatgaagatg gcttgaaagc ggaaggcgat tatattgctt tagcggacga
     8641 atcactcgaa aatgtggata aactaacgat gttccaccca gttcatacgt atattatgaa
     8701 aacagtcgag aacttcaccg cgcgtgagct acttgtaccg attttccaaa acggagaact
     8761 tgtatatgat atgccttcac tagatgaaat taaagcatat aaagaagaga acttggcgct
     8821 actttgggac gagtacaaac gaacagttcg tccggagcaa tacccagttg atttaagtgt
     8881 aaaatgttgg aaaaataaga tgcgtaatat cgaaaaggta cgtaaaagtg tccagcttca
     8941 ttcaccagtt gaactagata tgccgtttta ggaggaatta taatggaaat cagagaaaga
     9001 attttagcag atatgcaagt ggcagaaacg attgatgcac acgaagaaat ccgaaaaagt
     9061 gtcgagtttt taaaagcata tttaaaaaag aatacgttct taaaaagctt tgttcttggg
     9121 atttctgggg gacaagattc gactttaaca ggaaaactag cacagatggc gataagcgaa
     9181 atgcgagcag aaacgggtga cgatcagtac caattcttcg ctgtgagctt gccatacgga
     9241 acgcaactag atgaatcgga ccgtcaagat gcactgaact ttatggaacc agataatcgt
     9301 ttaaccgtaa atattaaagc ttcagtggat gcgagtgttg cggcgcttgc ggaagcggga
     9361 gtggaactat ctgatttcgc taaaggtaac gaaaaagcgc gcgaacggat gaaagtacaa
     9421 tacgcaattg cagcgatgca taaaggcgta gtagttggaa ccgatcactc cgcagaagca
     9481 gttactggct tttatacgaa atacggcgac ggtggaacgg atattaatcc actatttcgc
     9541 ttgaataaaa gacaaggcaa ggcgcttctt aaagagcttg gctgcccaga acatctatat
     9601 ttgaaaaaac cgacagcaga tttagaagat aataaaccgg cacttcctga tgaggtcgcg
     9661 cttggtgtga cttatgacca aattgacgat tacttggaag gtaaggaagt tccagcagat
     9721 gctgcagcaa aaattgagaa ctggtttatt aaaaccgaac ataaacgcca tatggcaatt
     9781 actatatttg acgatttctg gaaataggag gctgtttaaa tgaaagttgg ttatggttta
     9841 ttaactgcat tttatacaca tccaggagaa aaagataatt tagtgaaaat tttgcttgaa
     9901 gcggctgaag gattggatga ttacaacacg tgtattcagt atattgtcag cgaatctgaa
     9961 accgagccag acacggtgtt tgtttctgaa atttgggtcg acaaagggca tcatgcagca
    10021 tcacttgata acccagctgt acaagaaacc attgcacgcg caaaaccgat gataaaagaa
    10081 ataaaacaaa tacaagaatt agacatactc ggtggaaaag gcatataatt ttaacaacaa
    10141 gaatgattct ggggctctcc tggaatcatt ttttggaggg atgagaaatg aaaacgttga
    10201 tgattgtttg tgctggtggt gcgacgtcga gtttaatggc gcaaaatgtc gtgaaaagcg
    10261 cgacgtcaga aggaatggac gctgttctac tatttccaga tgatgtgaaa tataaagata
    10321 gttttcgtga aaaatacagc gagcgggatt tggttgtcgt gatgggacca gtcggcgcaa
    10381 ttacagctgg gaaattccgt gattataaag aacaggttga cgcggtttta gtagcaccac
    10441 aagtgaaata tatgtacaaa acagtggagg aagtattagg cgaactaagt attccttgcg
    10501 ctaatattga ttcactcgat ttcggtcgga tgcgtggaga taagattctc acgcaaggtc
    10561 tagccttaat ggatgcgaaa aattccaaat aaggtgttgc aactttagag gggaaacgtt
    10621 aaaatgaaag aagatgaaaa ggacaagtga tttgtccttt tcttatatta ttgtgaagta
    10681 accgcgattt tgcggtttca ttttatagat aagggtggtt ttgtttaaaa ttatgaaaga
    10741 ctttaccgag caagagaaaa ttatcgttct agattttggt agtcagtaca atcaactaat
    10801 tacgcgccgc attcgtgagt tcggtgtgta tagtgaatta catccgcata ctattacagt
    10861 tgaagaaatg aaagcactaa atccaacggg gattattttt tcaggaggac ctaacagtgt
    10921 gtatgacgaa gatgccttcc gcgctgacga aagaatcttt gacatgggaa ttccgatttt
    10981 gggaatttgt tacggcatgc aattaatgac aacgcacttc ggtggcaaag tagaacgtgc
    11041 gaaagaccgc gaatacggga aagcggacat tcacgttgag aagccaaacc gtttatttgc
    11101 tggactacca accgatcaag ttgtttggat gagtcacggc gatttagtcg ttgaggagcc
    11161 tgctggtttt gaagtaacaa ttactagtaa atcttgccca attgcaggta ttgcggacga
    11221 agaacgttca ctttacggcg tgcaattcca cccagaagta cgtcactctg tttacggcaa
    11281 cgaattactg aagaattttg cattaaatgt ttgtggctgt aaaggcgact ggacaatgga
    11341 gaactttagt gaagtagaaa tcgctaaaat ccaagaaatc gtaggcgaca aaaaagtctt
    11401 gcttgccctt tctggcggcg tagattcctc tgttgttggt gtgttaattc ataaagcaat
    11461 cggcgaccaa ctaacttgta ttttcgtaga ccatggcctt cttcgcaaag gggaagctga
    11521 ccaagtaatg gcaacattac aaggcgaatt caacatgaac atcatcaaag tagatgcgaa
    11581 aaaacgcttc atggacaaac ttgctggcgt ttctgaccca gagcaaaaac gtaaaatcat
    11641 cggtaacgaa ttcatttacg tattcgacga tgaagctaac aaactagacg gcgtagaatt
    11701 cctagctcaa ggaacacttt acacagacat catcgaaagt ggtacagcaa ctgcccaaac
    11761 aatcaagtct caccacaatg taggcggctt accagaagat atgcaattta aactaatcga
    11821 accattaaat acacttttca aagatgaagt tcgcgcacta ggaacagaac ttggcatgcc
    11881 tgacgcaatc gtttggcgcc aaccattccc aggcccaggc ttaggaatcc gcgttcttgg
    11941 cgaaattacg gaagagaaat tagagattgt ccgcgattct gattacatct tgcgtgaaga
    12001 aatcaaaaac gcaggtctag aacgcgaaat ctggcaatac tttactgctc ttccaaatat
    12061 ccgtagcgtt ggtgttatgg gtgatggcag aacgtatgac catactgtgg ttgttcgtgc
    12121 ggtgacgagt attgatggta tgacagccga ttgggcacgt attccgtggg atgtactgga
    12181 gaaaatttcg gtacggattg tgaatgaagt ggatcacgtg aatcgtgttg tttatgatat
    12241 tacgagtaaa ccaccagcta cggttgagtg ggaatagtaa acaaagccct aaaacctcag
    12301 taatgatgag gttttagggc tttttctatg tcgagtgata acagtttgat aacagtttat
    12361 attatcgtag taattttacg gataatattc tatcaaattt tagtaatatc attcattaaa
    12421 ataattttct atatgaaagg ctttgtcgaa aattgacgag cttttttttg cgtttttatt
    12481 tcgactgatc tcgttttgat tttgtttttt ctgcttctac ttttggataa ttaaatcgcc
    12541 agtgattgta ttcttccaaa gttatttctt cattctcaaa tttctcagct tctttttgcc
    12601 aagaaagaaa agaatcatac agagtgtgga atgattttga atttttatca agctttaaag
    12661 aaatgccatc atcaccatct ataatcttta aaccataagt atcctcaatt gaaaataagg
    12721 tatgcataag accgacatag ctatcaatat ttggtgtagt aagagcatcg gtacgaatat
    12781 caaaaatttt tgataaatca ttaatcatat cttcttttgg ttttcttgtt ccactttcat
    12841 attgtgcaat acgaatatca gctgtttttt tatcaaagcc tagagctaaa cctaattctt
    12901 tttgagtcat acctttgag
//
LOCUS       DASEAA010000070        12907 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.070, whole genome shotgun sequence.
ACCESSION   DASEAA010000070 DASEAA010000000
VERSION     DASEAA010000070.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12907)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12907)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12907
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.070"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            639..1994
                     /gene="dnaA"
                     /locus_tag="U0342_001635"
     CDS             639..1994
                     /gene="dnaA"
                     /locus_tag="U0342_001635"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosomal replication initiator protein DnaA"
                     /protein_id="HEM2422981.1"
                     /translation="MQSIEDIWQETLQIVKKNMSKPSYDTWMKSTTAHSLEGNTFIIS
                     APNNFVRDWLEKSYTQFIANILQEITGRLFDVRFIDGEQEENFEYTVIKPNPALDEDG
                     IEIGKHMLNPRYVFDTFVIGSGNRFAHAASLAVAEAPAKAYNPLFIYGGVGLGKTHLM
                     HAVGHYVQQHKDNAKVMYLSSEKFTNEFISSIRDNKTEEFRTKYRNVDVLLIDDIQFL
                     AGKEGTQEEFFHTFNTLYDEQKQIIISSDRPPKEIPTLEDRLRSRFEWGLITDITPPD
                     LETRIAILRKKAKADGLDIPNEVMLYIANQIDSNIRELEGALIRVVAYSSLVNKDITA
                     GLAAEALKDIIPSSKSQVITISGIQEAVGEYFHVRLEDFKAKKRTKSIAFPRQIAMYL
                     SRELTDASLPKIGDEFGGRDHTTVIHAHEKISQLLKTDQVLKNDLAEIEKNLRKAQNM
                     F"
     gene            2188..3333
                     /gene="dnaN"
                     /locus_tag="U0342_001636"
     CDS             2188..3333
                     /gene="dnaN"
                     /locus_tag="U0342_001636"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit beta"
                     /protein_id="HEM2422982.1"
                     /translation="MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTL
                     TGSDSDISIEAFIPLIENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVTSNY
                     QTNISSGQASFTLNGLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRP
                     VLTGVNWIIKENKLSAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDA
                     SESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAID
                     RASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKY
                     MMDALRAFEGDDIQISFSGTMRPFVLRPKDAANPNEILQLITPVRTY"
     gene            3441..4784
                     /locus_tag="U0342_001637"
     CDS             3441..4784
                     /locus_tag="U0342_001637"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2422983.1"
                     /translation="MMKDMTTGNPTKLIFLFAMPMLIGNLFQQFYTMIDAVIVGKFVS
                     VDALAAVGATNSVNFFMISLIIGLMSGISVVVAQYFGFKDFDRLKDVIATATYAVVFS
                     AIILTVAGVLLAKPLLILLRTPANILDDSTIFLTTLFIGILPMSLYNGMAAILRALGN
                     SITPLIFLILSSLMNIALDFLFVVYMDMGVRGAAIATVLSQTAAAIAVIYYAYRHVPF
                     MRIERAKFKLSTPLLKEMVRIGLPSGLQGSFISIGNMALQSLINGFGSSVVAAYTAAS
                     RIDSLTYQPGIAFGAASSMFAGQNIGAGKIDRVREGFWSGIKVVTAISIGITILVQLF
                     AREFLLLFVDSSETEVINIGVSYLLIVSLFYVVVGVLFVVRETLRGTGDAMVPLAMGI
                     FELVSRLVIGFVLSLYIGYIGLWWATPVAWITATMLGVWRYKSGAWQKKAVIRRK"
     gene            4964..5185
                     /gene="yaaA"
                     /locus_tag="U0342_001638"
     CDS             4964..5185
                     /gene="yaaA"
                     /locus_tag="U0342_001638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S4 domain-containing protein YaaA"
                     /protein_id="HEM2422984.1"
                     /translation="MAETVKINSEFVTLGQLLQMIDVVSTGGMAKAYLSENTIYINGE
                     QDNRRGKKLRNGDVILVPGVGKVKIEQGK"
     gene            5189..6301
                     /gene="recF"
                     /locus_tag="U0342_001639"
     CDS             5189..6301
                     /gene="recF"
                     /locus_tag="U0342_001639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication/repair protein RecF"
                     /protein_id="HEM2422985.1"
                     /translation="MHLESIVLRNFRNYENLELEFSPSVNVFLGENAQGKTNLLEAVL
                     MLALAKSHRTTNDKDFIMWEKEEAKMEGRIAKHGQSVPLELAITQKGKRAKVNHLEQK
                     KLSQYVGNLNVVIFAPEDLSLVKGAPGIRRRFLNMEIGQMQPIYLHNLSEYQRILQQR
                     NQYLKMLQMKRKVDPILLDILTEQFADVAINLTKRRADFIQKLEAYAAPIHHQISRGL
                     ETLKIEYKASITLNGDDPEVWKADLLQKMESIKQREIDRGVTLIGPHRDDSLFYINGQ
                     NVQDFGSQGQQRTTALSIKLAEIDLIHEETGEYPVLLLDDVLSELDDYRQSHLLGAIE
                     GKVQTFVTTTSTSGIDHETLKQATTFYVEKGTVKKS"
     gene            6350..8290
                     /gene="gyrB"
                     /locus_tag="U0342_001640"
     CDS             6350..8290
                     /gene="gyrB"
                     /locus_tag="U0342_001640"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase (ATP-hydrolyzing) subunit B"
                     /protein_id="HEM2422986.1"
                     /translation="MSEENITNVQENASDYNEDQIQVLEGLEAVRKRPGMYIGSTSQR
                     GLHHLVWEIVDNAIDEALAGFCTEIEITIEADNSITVRDNGRGIPTGINEKIGRPTVE
                     VIFTVLHAGGKFGGGGYKVSGGLHGVGASVVNALSTSLEVYVHREGQKYYQRFERGDV
                     VMDMEEQGETDYRGTIVHFTPDPQIFTETTEFDFDTLRTRTRELAFLNRGLTISIEDK
                     REEHKVRKDFHYEGGIRSYVEHLNKAKDVIHEPPIYLEGERDDIMVEISMQYNTGFSS
                     NIISFANNIHTYEGGTHESGFKTALTRVINDYARRNKLFKDSDDNLSGEDVREGLTAI
                     ISIKHPDPQFEGQTKTKLGNSEARSITDKLFSEALNKFMMENPDVAKKIVEKGVVASR
                     ARLAAKRAREVARKSSGLEISSLPGKLADCSSRNPEISELYIVEGDSAGGSAKQGRDR
                     LFQAILPIRGKILNVEKARLDRILANEEIRTIFTAMGTGFGGDFDVSKSRYHKLIIMT
                     DADVDGAHIRTLLLTLFYRYMRPLLDAGYIYIAQPPLYQIKHGKQIEYVYSDGQLEDY
                     LASLDGDTKYSIQRYKGLGEMNPEQLWDTTMNPEHRTLLQVNIKDAIDADETFEMLMG
                     DRVEPRRKFIEDNAQYVKNLDV"
     gene            8385..10913
                     /gene="gyrA"
                     /locus_tag="U0342_001641"
     CDS             8385..10913
                     /gene="gyrA"
                     /locus_tag="U0342_001641"
                     /EC_number="5.6.2.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA gyrase subunit A"
                     /protein_id="HEM2422987.1"
                     /translation="MAETPNQRITEINLNKEMRTSFLDYAMSVIVARALPDVRDGLKP
                     VHRRILYAMNDLGMTSDKAYKKSARIVGEVIGKYHPHGDTAVYFTMVRMAQDFSYRNM
                     LVDGHGNFGSVDGDMAAAMRYTEARMSKISMELLRDINKDTIDYADNYDGSEREPVIL
                     PARFPNLLVNGSSGIAVGMATNIPTHHLGEVIDGVLALSHDPDITIRDLMEYIPGPDF
                     PTAGMIMGRSGIRRAYESGRGSITVRGRVDIEEKKNGKETIVITEIPYQVNKARLVER
                     IAELAREKKIDGITSLNDESDRSGMRIVIEVRRDISASVIVNNLFKMTALQTTFGINM
                     LALVDNHPKVLNLKEILYHYLEHQKVVIRRRTEFELRKAEARAHILEGLRIALDNIDA
                     IIKLIRGSKTSDVAKEGLMTQFNLSDKQAQAILDMRLQRLTGLEREKIEEEYQNLVAL
                     INDLKAILADDERILEIIREELEEIKVKYADKRRTEILAGDLVSLEDEDLIPEEEVAI
                     TLTKRGYIKRLPLSTYRSQRRGGRGIQGMSTHEDDFVEHLVATSTHDTLLFFTNTGKV
                     YRSKGYEVPEYGRTAKGIPIINLLGIESQEQVNAVINLSEFTDDSYLFFTTKHGVVKR
                     TTLSQFAKIRQSGLRAVELRENDELISVQMTDGSKNMIIATKHGQSIYFPEENIRVMG
                     RTAAGVRGIRLREDDEVIGMEVLEDDEKVLVVTEKGYGKQTPASQYPLRNRGGMGVKT
                     VTITEKNGNLVAMKTVTGEEDLMLMTVSGVLIRFEIDTVSQTGRSAMGVKLIRLDEDE
                     KVATVAKVPKEEDEVELEEEIDETLITQVPDESFEDAPGSDIEE"
     gene            11047..12561
                     /gene="cls"
                     /locus_tag="U0342_001642"
     CDS             11047..12561
                     /gene="cls"
                     /locus_tag="U0342_001642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cardiolipin synthase"
                     /protein_id="HEM2422988.1"
                     /translation="MRKLIQFLFIAVVLFLVEYFLINQAAILFLVTSGLIQLCGLIIV
                     IRLLLFDQRNTSSKVAWIAVIFILPVLGTISYLVFGRNPATRKFSTAQVMEKAKLINA
                     IHAIPNNTNEKLPRLSKRIAHLTSIEPIKGNKIEILTNGEETFPVLLDALRKAENHIH
                     IQYYIFKTDEISTEIRDILVEKAKSGVEVRFMFDGLGSSKLHKAFLAPLKEAGVSIHA
                     FDPITSPWIVRTANLRNHRKIVVIDGQIGFTGGLNIGEEYRSNTPDFRVWRDTHIKIT
                     GQAVIELQESFLNDWVYMENQAGAADQFISEAGLQQYFSPVDVGDEWAQVIYGGPYDK
                     EKWVRDSMLDLIDSAKESVWIVSPYFVPDEESLAVIRRVAMSGVDVRVIIPGKGDRGI
                     SFHGSNAYVKTMIEAGAKMYAYADDSFVHAKAMLVDGTRAAIGTANFDVRSFRLNHEL
                     MVFLYDESEAMHHLKRDFEKDFEDSRLFTMKDMENKPLLTRIKEVLSSLLSPIL"
     gene            12577..>12907
                     /locus_tag="U0342_001643"
     CDS             12577..>12907
                     /locus_tag="U0342_001643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2422989.1"
                     /translation="MSGDLKLRPLEREDLKFVHRLNNDAKIMSYWFEEPYEAFVELQE
                     LYDKHIHDQSERRFILELDGQMVGLVELMEIDYIHRRAEFQIIIDPKFQGHGYAVSAT
                     KLAMKYAF"
BASE COUNT         4135 a         2237 c         2651 g         3884 t
ORIGIN      
        1 taaaatcatc aatttctgct ggttcccgtt tgtcgtgaat tagtaagtat ccaaacacat
       61 cttcaatatt cccgttttgt ataactcgat aaaattctgt atctctcgtt ttcaaaagcc
      121 gttgaaatat catttttcac aacctcattt atttgtcttt tttcttattc tggtaaatag
      181 tttaacacat tgtcgtaatg aaatcctttt ccggaaagtg tggataacta gttaataaca
      241 cctttttatt gtggataacc ttttcaatta gtttaaactt atacacaatt agtggttaat
      301 tacacacaat ggcttgtgga taattaaatc taacaatttc gttacagatt tctttacaca
      361 caagttatac acaagttaac tggctgtgga caaccgtttt tcacatctgg acagttttgt
      421 ggatagattt tgtaagtcct tgctatcaga gtgattttct gatattataa ttcctgtcga
      481 atagaaatat agctggggaa aactaaagtt atccacaata catttttact ttgtggataa
      541 ttttttaaca gtgtttggat aaccttatcc atggcttttt ctatctgtgg ataactttat
      601 agcatccatt tacattacat aaaaaagggg ggttactagt gcaatcaatt gaagacatct
      661 ggcaggaaac actgcaaatc gttaaaaaaa atatgagtaa acctagttac gacacatgga
      721 tgaaatcaac aaccgctcat tcacttgaag gtaacacgtt tattatttca gcgcccaata
      781 attttgttcg cgattggtta gagaagagtt acacgcaatt tatcgctaac attttgcaag
      841 aaataactgg tcgcttattt gatgtccgct ttattgatgg cgagcaggaa gaaaactttg
      901 aatacactgt gattaaacca aatccagcgt tagatgaaga tggcattgaa attggaaaac
      961 atatgcttaa tccgcgttat gtttttgata cttttgtcat tggttcaggg aacagatttg
     1021 cccacgcagc atcacttgca gtagccgaag caccagcgaa agcatataat ccactcttca
     1081 tttatggagg agttggcctc ggtaaaacac atttaatgca cgcagttggc cactatgttc
     1141 aacaacataa agataatgcg aaagtaatgt acctttccag cgaaaaattc accaatgagt
     1201 ttattagctc tattcgtgat aataaaaccg aagaattccg tacaaaatac cggaatgtgg
     1261 atgtcttact tattgatgat attcaatttt tagcaggtaa agaaggaaca caagaggaat
     1321 ttttccatac atttaacaca ctttatgatg aacaaaagca aattattatt tccagtgacc
     1381 gaccaccgaa agaaattcca acattggaag atcgactgag atcccgcttt gaatggggcc
     1441 taattactga tattacgcca ccagacttag aaacacggat cgccatttta cgtaaaaaag
     1501 caaaagcaga cggattagat attccaaatg aagtcatgct ttacatcgca aaccaaattg
     1561 attcgaatat tcgcgagcta gaaggcgcac tcatccgagt agttgcttat tcttccctcg
     1621 ttaataaaga tataacagct ggtcttgcag cagaagcact aaaagatatt atcccctctt
     1681 ctaaatcaca agttattaca attagtggta ttcaagaagc agtcggtgaa tatttccatg
     1741 ttcgtttaga agattttaaa gcaaaaaaac ggacgaaaag tatcgcattc ccgcgccaaa
     1801 tcgctatgta tctttcaaga gagcttacag atgcctcatt accaaaaatc ggtgatgaat
     1861 ttggtggtcg agatcataca accgtcatcc atgcacatga aaaaatatcg caactactaa
     1921 aaaccgatca agtgttgaaa aatgaccttg ccgaaattga aaaaaattta agaaaagcac
     1981 aaaatatgtt ttaatagacc tgtgtacaat gtggataact gaaacatact tacccacaag
     2041 ttatcaacat gtggaaaact ttatgtcgca tggcttataa cctacttatc cacaaatcca
     2101 cagcgcctat tactattact acgatttttt attaattaat taaaggtttt tgaggtttta
     2161 caaaatataa aaaaatgggg gatactcatg aaatttgtta ttgagcgtga tcgtcttgtc
     2221 caagcagtca atgaagttac tcgtgccatc tctgcaagaa caacgattcc aattttaacg
     2281 gggataaaaa tagtcgtaaa tgatgaaggt gtaacactaa ctggtagtga ttccgatatt
     2341 tcaatcgaag catttattcc attaattgaa aatgatgaag taattgtaga agtggagagt
     2401 tttggtggaa ttgtacttca atcaaaatac tttggcgata ttgttcgtcg tttaccagaa
     2461 gaaaatgtag aaattgaagt gacttctaac taccaaacca acattagttc tggccaagca
     2521 tcctttacat taaatggctt agatccaatg gaatatccta aattacctga agtaacagac
     2581 ggaaaaacaa ttaaaattcc aattaatgta cttaaaaata ttgttagaca aactgttttt
     2641 gctgtgtctg cgattgaagt tcgtccagta cttactggtg taaactggat tatcaaagaa
     2701 aataaactaa gcgcagttgc aaccgatagt catcgtctag ctttacgtga aatacctctt
     2761 gaaacagaca ttgatgaaga atacaacatt gttattcctg gaaaaagttt atctgaatta
     2821 aataaacttt tagatgatgc aagcgaatct attgaaatga cccttgccaa caaccaaatt
     2881 ctttttaaat taaaagattt attattttat tctcgtttac ttgaaggtag ttatccagat
     2941 acatctcgat taattccaac tgatactaaa tcagaattag tcattaattc caaagcattt
     3001 ttacaagcaa ttgaccgtgc gtccctactt gctcgcgaaa atcgtaataa cgttattaaa
     3061 ttaatgacgc tagaaaatgg ccaagtagaa gtatcatcca attctccaga agttgggaat
     3121 gtttctgaaa atgtcttcag ccaaagtttt actggcgaag agatcaaaat atcttttaac
     3181 ggtaaataca tgatggatgc cctacgtgct tttgaaggtg atgatattca aatttccttc
     3241 tccggtacaa tgagaccatt cgtacttcga ccaaaagatg cagccaatcc aaatgaaatt
     3301 ttacaattaa tcacgccggt tagaacttac taatctcgca aaaagcacat ccgtcttggt
     3361 ttcaaggcgg attctttttt tgttatagta cagtttttgg atagaaatgt atatttatgc
     3421 aaacggaggt aattcttagc atgatgaaag atatgacaac aggtaatccg acaaaattaa
     3481 tttttttatt cgcgatgccg atgttgattg gaaacttgtt tcagcaattt tatacgatga
     3541 ttgatgctgt tattgttggg aaatttgtca gtgtagatgc gctggctgct gttggagcga
     3601 caaattcggt caattttttt atgatttctt tgattattgg acttatgagc gggatttctg
     3661 tcgtagtagc gcagtatttt gggtttaaag attttgatcg tttgaaagat gttattgcaa
     3721 cggcgactta tgcggtggtt ttttcggcga ttattttaac tgttgcagga gttttgctag
     3781 caaagccatt gctaatttta cttagaactc cagcgaatat tttggatgat tctactatct
     3841 ttttaaccac tctttttatt gggattttac cgatgagtct gtataacgga atggccgcga
     3901 tacttcgggc gcttggaaat tcgattacac cgctgatttt tttaatttta tcgtccttaa
     3961 tgaatattgc acttgatttt ttatttgtcg tatatatgga tatgggcgtt cgcggggctg
     4021 ctattgcgac agttctttct caaacagctg cagcaattgc cgttatttac tatgcttatc
     4081 gccacgtacc atttatgcgg atagagcgcg caaaattcaa gctttccacc ccactactta
     4141 aagaaatggt gcgcattgga ctaccttctg gattacaagg atcctttatt tctatcggaa
     4201 acatggctct tcaaagttta ataaatggat ttggttcatc ggtcgttgcg gcatatacgg
     4261 cggcgagtcg aattgattca cttacatatc aaccaggaat tgcttttgga gcagcttctt
     4321 cgatgtttgc tggtcagaac atcggtgctg ggaaaattga ccgcgttcgc gaaggttttt
     4381 ggtcgggaat taaagtagtt acagctatca gcattggaat aacgatttta gttcaacttt
     4441 tcgctcggga gtttttatta ctatttgttg attctagtga gacggaagtt attaatatcg
     4501 gtgtaagtta tttacttatt gtctctttat tttatgtcgt agtgggagtt ttatttgttg
     4561 ttcgagaaac actcagaggc accggagatg cgatggttcc tttagctatg gggatttttg
     4621 agttagtttc gagactggtt atcggatttg ttttatcgct ttatattggt tacatagggc
     4681 tttggtgggc tacaccagtt gcgtggatta cagctacgat gctcggcgtt tggagatata
     4741 aatcaggagc atggcaaaaa aaggcagtta ttaggcgaaa ataaccattt tagtaaaaaa
     4801 acgccagaga agctcatatt ttcttttttt taataaataa tatcccccca ttagttttgc
     4861 taaaaaaagc tgaaaaacga atatatgaaa atattctttg tattattggc aaaactttag
     4921 taaaatagaa ggtagtgata aaaaaagatt gggcgtgaaa tttttggctg aaacagtaaa
     4981 gataaatagc gagttcgtaa cgcttggtca acttttacaa atgattgatg tagtttcaac
     5041 tggtggaatg gcgaaagcgt accttagtga aaatacgatt tacatcaacg gagagcaaga
     5101 caaccgccgg gggaaaaagc ttcgtaatgg cgatgttatc ttagttcccg gtgttggaaa
     5161 agtgaaaatc gagcaaggaa aataacagat gcatttagaa agtattgttt taagaaattt
     5221 ccggaattac gaaaacttag aactagaatt ttccccatct gttaatgttt ttcttggtga
     5281 gaatgcacaa ggtaaaacca accttttaga agccgtattg atgcttgcac ttgcaaagtc
     5341 acatcggaca acgaatgata aagattttat tatgtgggaa aaagaagaag ccaagatgga
     5401 agggcgaata gcaaagcacg gacaatcagt gcctttagag cttgctatca cccaaaaagg
     5461 taagcgagct aaagtaaatc atttggaaca aaagaaactt agccaatatg tcggtaactt
     5521 gaatgtggtt atttttgccc cagaagattt atcgcttgtg aagggcgctc caggaattag
     5581 acgtcggttt ttgaatatgg aaattggaca aatgcagccg atttatttgc ataatctaag
     5641 tgaataccaa cgaatattgc aacaacggaa ccaatatttg aagatgttgc aaatgaaacg
     5701 aaaagtagat ccaatattac tcgacatttt gactgaacag ttcgcagatg tcgccattaa
     5761 tttgacgaaa agacgagctg atttcattca aaaactagag gcatatgcgg cgccaattca
     5821 tcaccaaatt tcccgaggac ttgagacgct gaaaattgag tataaagctt ccatcacgct
     5881 aaatggggac gatcccgaag tgtggaaagc agatttgctc caaaaaatgg aatcaatcaa
     5941 acaaagagaa atcgaccgtg gtgtcacgct tattggacca catcgggatg attctctgtt
     6001 ttatattaat gggcaaaatg tgcaagattt tggttcgcaa ggtcagcaac ggacaacggc
     6061 actttctata aaattagcag aaattgacct aatccatgaa gaaactggcg aatatccggt
     6121 tcttcttctc gatgatgtgc ttagtgaact cgatgattat cgtcaatcgc atttgctcgg
     6181 agctattgaa ggaaaagtac aaacctttgt aacgacaaca agtacgagcg ggatcgacca
     6241 tgaaacgctc aaacaagcaa caactttcta tgtagaaaaa ggtacggtaa aaaaatccta
     6301 atctaggtta atataatttg atgaaaaaga aagtgcggtg gaataattaa tgtcagaaga
     6361 aaatattaca aatgtacaag aaaatgcttc agattataac gaagatcaaa tacaagtact
     6421 ggaaggtcta gaggcagtaa gaaaaagacc tggtatgtac attggttcaa ctagtcaacg
     6481 cggactccat cacctggtat gggaaattgt tgataacgca attgatgaag cacttgctgg
     6541 tttttgtaca gaaattgaaa ttacaatcga agctgataac agcattactg ttcgtgataa
     6601 cggacgtgga attcctactg ggattaacga aaaaattggt cgtccaacag tagaagttat
     6661 ctttaccgtt ctacatgctg gtggtaaatt tggcggcggc ggatataaag tatctggcgg
     6721 acttcacgga gttggtgcat cggtagttaa tgccctttcc acatctcttg aggtatacgt
     6781 tcaccgtgaa ggtcaaaaat attaccaacg ctttgaacgt ggtgatgtag taatggatat
     6841 ggaagaacaa ggcgaaacgg attaccgtgg aacaattgtt cactttacgc cagatccaca
     6901 aattttcaca gaaacaacgg aatttgattt tgatacactt cgtactcgta cgcgcgaact
     6961 tgctttcttg aatcgtggtt taacgatttc aattgaagac aagcgcgaag aacacaaagt
     7021 tcgtaaagat ttccactatg aaggcggaat tcgttcttac gtggagcatt taaataaagc
     7081 aaaagacgtt atccatgagc caccaattta tttggaaggt gaacgcgatg acattatggt
     7141 tgagatttcc atgcaatata atactggatt ctcaagcaat atcatttcat tcgcaaataa
     7201 cattcatacg tatgaaggcg ggactcacga atctggattt aaaacggcgt taacacgtgt
     7261 tattaatgac tacgcgcgtc gtaataaatt gttcaaagat agtgatgata acctttccgg
     7321 tgaagatgtt cgtgaaggtt taacagcaat catttccatc aaacacccag atccacagtt
     7381 tgaaggacaa acaaaaacaa aacttggaaa ttcagaagct cgttcaatca cggataagct
     7441 gttttctgag gctttaaata aatttatgat ggaaaaccca gatgttgcta aaaaaatcgt
     7501 tgagaagggc gttgtagctt ctcgtgcacg tctggctgct aagcgcgcgc gtgaagttgc
     7561 tcgtaaaagc agtgggttag aaatttctag cttgccaggt aaactagctg actgttcttc
     7621 ccgtaaccct gaaatcagcg aactttacat cgttgagggt gactcagctg gtggttcagc
     7681 taaacaaggt cgtgaccgtt tattccaagc tattttgccg attcgtggta aaattttgaa
     7741 cgtggagaaa gcgcgtttag accgaatttt agctaacgaa gaaattcgaa ctatttttac
     7801 ggctatggga actggttttg gtggagattt cgatgtttct aaatctcgtt accacaaatt
     7861 aattattatg actgatgctg atgttgatgg tgcacatatt cgtacactac ttcttacgct
     7921 attttatcgt tatatgcgcc cactgcttga tgctggttat atctatattg cacaaccacc
     7981 gctttatcaa attaagcacg gtaaacaaat agaatatgta tatagcgacg gacagttaga
     8041 agactatcta gcttcccttg acggagacac taaatacagc attcaacgat ataaaggtct
     8101 tggagaaatg aacccagaac aactttggga tacaaccatg aatccggaac accgtacact
     8161 acttcaagtc aatatcaaag acgctattga tgccgatgaa acttttgaaa tgttgatggg
     8221 tgaccgcgtg gaacctcgtc gtaaattcat cgaagacaac gcgcaatacg ttaaaaactt
     8281 ggatgtttaa taaatatttc ccgggtaata attgggttat taattgtttt taaaaggttt
     8341 gaactagatt cagccttact tttgaaaggg aggtttctct aacaatggca gaaacaccaa
     8401 atcaacgaat aacagagata aacttaaata aagaaatgcg gacatcattc ctggactatg
     8461 cgatgagtgt aattgttgcc cgtgccctac cagacgttcg tgacggatta aaaccagttc
     8521 atcgtcgtat tctatatgcg atgaatgact taggtatgac ttctgataag gcctataaaa
     8581 aatcagctcg tatcgttggt gaagtaatcg gtaagtatca cccccacggc gatacagcgg
     8641 tttattttac aatggttcgg atggcgcaag attttagtta ccgtaatatg ctagttgatg
     8701 gacatggtaa ctttggttcg gtcgatggcg atatggcggc agcgatgcgt tatacagaag
     8761 cacgtatgtc aaaaatttcg atggaacttc ttcgcgatat taataaagat acaattgatt
     8821 atgctgataa ctacgatggt tctgaacgtg agccagtcat tttaccagcg cgtttcccta
     8881 acttacttgt caatggttcg tcaggtattg cggttggtat ggcaacaaac attcctaccc
     8941 accatcttgg tgaagttatc gacggcgttt tagcgcttag tcatgatccg gatattacta
     9001 ttcgtgattt aatggaatat atccctggcc ctgacttccc tactgctggg atgattatgg
     9061 ggcgtagcgg aatccgtcgc gcttacgaaa gtggccgtgg ttcgattact gttcgtggtc
     9121 gtgtcgatat tgaagaaaag aaaaatggta aagaaacaat cgttattacc gaaattcctt
     9181 accaagtaaa taaagcgcgc ctagttgagc gtattgccga actagctcgt gagaagaaaa
     9241 tcgacggtat cacttcccta aacgatgaat ctgaccgttc tggaatgcgc attgttattg
     9301 aagttcgtcg tgatattagt gcaagtgtta tcgtgaataa tttattcaaa atgacagcac
     9361 ttcaaactac ttttggtatt aatatgctcg cacttgtcga caatcatcca aaagtactta
     9421 atttaaaaga aattctttat cattatttag agcatcaaaa agtagttatt cgtcgccgta
     9481 cggaatttga gcttcgtaaa gcagaagcgc gcgctcacat tttagaaggt ttacgaattg
     9541 cactagataa tattgacgcg attattaaat taattcgtgg atcaaaaact tccgatgttg
     9601 ctaaagaagg cttgatgaca caattcaacc tttcggacaa acaagcgcaa gccattttag
     9661 acatgcgttt gcaacgttta acaggtttgg aacgcgaaaa aattgaagaa gaataccaaa
     9721 acttagtggc attaattaat gatttaaaag ccattttagc tgatgatgag cgtattcttg
     9781 aaattattcg tgaagaatta gaagaaatca aagttaaata cgcggataaa cgtcgtacag
     9841 aaatcttagc tggtgattta gtaagccttg aagatgaaga cttaatccct gaagaagaag
     9901 tggcgattac actaactaaa cgtggctata ttaaacgttt accattatca acttatcgta
     9961 gccaacgtcg tggtggtcgt ggtatccaag gtatgtctac tcatgaagat gatttcgtag
    10021 aacatcttgt tgcaacgagc acgcatgata cgttactatt cttcactaac acaggtaaag
    10081 tttaccgttc gaaaggttat gaagtacctg aatacggtcg taccgccaaa ggtatcccaa
    10141 tcatcaactt acttggaatc gaaagccaag aacaagtgaa tgccgtgata aatctatccg
    10201 aattcactga tgatagctac ctattcttta ctactaaaca cggtgtcgtg aagcgtacaa
    10261 ccctttctca atttgcgaaa attcgtcaaa gtggtcttcg tgcagttgaa cttcgcgaaa
    10321 acgatgaact aatctctgtt cagatgacag atggtagcaa aaacatgatt atcgcaacga
    10381 aacatggaca atctatctac ttcccagaag aaaatatccg cgtaatgggc cgtacagctg
    10441 ctggtgttcg tggtattaga cttcgtgaag acgatgaagt tatcggtatg gaagtccttg
    10501 aggatgatga aaaagttctc gttgtaacgg aaaaaggata cggtaaacaa acaccggctt
    10561 cccagtaccc gcttcgtaat cgcggtggta tgggtgttaa aaccgttaca atcacagaga
    10621 aaaatggtaa cttagtcgca atgaaaacag tgactggtga agaagactta atgctaatga
    10681 cagtaagtgg cgtattaatt cgtttcgaaa ttgatacagt atcacaaaca ggtcgtagcg
    10741 caatgggtgt caaactaatt cgtcttgatg aagatgaaaa agtagctact gttgcaaaag
    10801 tgccaaaaga agaagatgaa gttgagcttg aggaagaaat cgatgaaaca ttaatcacac
    10861 aagttcctga tgaaagtttt gaagatgctc ctggaagcga tatagaagaa taaaatcaag
    10921 ctggagatga ctctaatttg cgaattagaa cgattttcca gcttttttcc agtataaaaa
    10981 gcgctttttg gctataattt atgtataata tccttaatac gtcttaaaaa gggaagagtt
    11041 gaacaaatgc gcaaactgat tcaatttctg tttatagcag tagttttatt tttagtggaa
    11101 tactttttaa tcaatcaagc agctatatta ttcttagtaa caagtggact tatccaatta
    11161 tgcggattaa ttattgtgat tcggctacta ctctttgatc aacggaatac tagctcaaaa
    11221 gtcgcctgga ttgcggttat tttcatttta cctgtacttg gaacgattag ttaccttgtg
    11281 tttggtagaa atccagcaac tagaaaattc agcacagctc aagtaatgga aaaagctaaa
    11341 ttaattaatg cgattcacgc aattccaaac aacactaatg aaaaattacc acgactatct
    11401 aaaagaattg cgcatttaac gtccatagag ccaattaagg ggaataaaat cgaaatatta
    11461 acaaatggcg aagaaacttt tccagtgctc ttagacgcgc ttagaaaggc tgaaaaccac
    11521 attcatattc aatactatat tttcaaaacg gatgaaattt ctacagagat tcgtgatatt
    11581 ttggtagaaa aggcgaaatc cggtgttgag gttaggttta tgtttgatgg acttggttca
    11641 agcaaacttc ataaggcatt tttagcgcct ctaaaagaag ctggagttag tattcatgcg
    11701 tttgatccaa tcacatcccc atggattgta aggactgcca acttgcgaaa tcaccgtaaa
    11761 attgtcgtga ttgatggtca aattggcttt acaggcgggc ttaatattgg agaagaatat
    11821 cgttctaata caccagattt ccgtgtttgg cgcgatacac atattaaaat cacaggccaa
    11881 gctgttatcg aacttcaaga atcttttcta aatgattggg tctatatgga aaaccaagca
    11941 ggtgctgcag atcaatttat tagtgaagct ggattacaac aatatttttc accagttgat
    12001 gtgggtgacg aatgggcgca agtgatttac ggcggaccat atgataaaga aaaatgggtt
    12061 cgcgattcga tgcttgattt aattgattcc gctaaagaat ctgtttggat tgtgtcgcct
    12121 tactttgttc cagatgagga gtcgcttgca gttattcgcc gggttgcgat gagcggtgtt
    12181 gacgtgcgag ttattattcc aggcaaaggt gatcgcggga tttcattcca cggaagtaat
    12241 gcgtatgtga aaacaatgat tgaagcaggc gcgaaaatgt atgcttatgc cgatgattct
    12301 tttgttcatg cgaaggcaat gctagtggac gggacgcgtg cagctatagg tactgccaat
    12361 tttgacgtgc gtagttttag attgaatcat gaattaatgg tattcttata tgatgaaagc
    12421 gaggctatgc atcatttaaa acgtgatttt gagaaagatt ttgaagatag ccgactgttt
    12481 acgatgaaag atatggaaaa caaaccatta ttgactcgta taaaagaagt tctatctagt
    12541 ttactatcac caattttata atttaggagt gggaaaatga gtggagattt aaaacttaga
    12601 ccgcttgaac gagaagattt aaaatttgtt caccggttaa ataatgacgc gaaaataatg
    12661 tcttattggt ttgaagagcc atatgaggcg ttcgtcgagc ttcaggagct atatgataag
    12721 cacattcacg atcagtcaga acgccgtttt attttagaat tagatggcca aatggttgga
    12781 ttagttgagt taatggaaat tgattatatt cacagaagag ccgaatttca aattattatt
    12841 gatcctaagt ttcagggaca cggttacgct gtttctgcca caaaactcgc aatgaaatat
    12901 gcttttc
//
LOCUS       DASEAA010000071        12905 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.071, whole genome shotgun sequence.
ACCESSION   DASEAA010000071 DASEAA010000000
VERSION     DASEAA010000071.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12905)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12905)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12905
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.071"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            20..733
                     /locus_tag="U0342_001644"
     CDS             20..733
                     /locus_tag="U0342_001644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxL domain-containing protein"
                     /protein_id="HEM2422990.1"
                     /translation="MIIKKTLIVGLIGISSVTLFAPAAFAVTSEGDSKATVKFKAGTG
                     VVNPVDPENPTKPIDPLDPSNPTDPGTGNTGSLTLDYVSSVNFGEHEVSSTEQSYSST
                     SRKPFIQISDRRGTGAGWKVTATATAFQNEDGAASLSGATLSFKNGETASASNTATTP
                     TAAQTVELPTDGTSIVSVVSAKESEGMGTWINRWFGATPNDTASLNNNVQLTIPAGSA
                     TLGDHEATITWTLSDAPGV"
     gene            801..1826
                     /locus_tag="U0342_001645"
     CDS             801..1826
                     /locus_tag="U0342_001645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF916 and DUF3324 domain-containing protein"
                     /protein_id="HEM2422991.1"
                     /translation="MKKSFLSLLFIIPLLVTCSNFAEAQAAEGDVGYSVQAHIPANQI
                     DKRQTYFDLKMQPKQKQTVNIDVMNSSNEEIQVEAAINYASTNRTGVIDYTKNDLTKK
                     DKSLEYPLPELAKIPDDQKLLTIPVDGKKTVQVMIEMPAESIDGVVLGAVEFKKKNTN
                     ETKKTKGVSLKNEYSYIVGMQLAETDKQVKPHMNLLSIKPALLNYHTAIVAKLQNDQP
                     VILENLSIDAKVYQQNSDKLLYQTKKANMKMAPNSNFDFGIDLENQPLKEGKYRLKMT
                     ATNGVETWTWDEAFTIGKEGQNLNKEAVNLEKTNTWLYVAIVAGVVLIALIIILVIRK
                     RRQKQEK"
     gene            1844..4309
                     /locus_tag="U0342_001646"
     CDS             1844..4309
                     /locus_tag="U0342_001646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2422992.1"
                     /translation="MAFKKLILVLTIAALFLGFKIVVAAENGSRDLASNEAIVTNFTE
                     LKTAISEDNGIDTVYLGADVELSGGIIIPATKKTFTLSGKNPATGEIHTLTETMASAG
                     AQSSVITVNTNTGAKETTLRDINVVGKNYYGTISVYGAAKNVVQNYENVHYQGPQMIY
                     NLNGTANFKGTNDITIASVVSGSAAPNEVAEIKGVSVSGKLNINHASSNANSAFWFGG
                     GTAEVNTFTVEENAEVTILSNGTGMFYRSGTKPIDIDVKKNAKLAITSNNNIFRDTPG
                     GAVKIASGADVTMTKTAGGNPLLWVADDITVSPDARFILNKTGGTGYIIQFYNATAKL
                     DINDPRSFLITTNSNTPMFYWPYANTFNLNAQMVNYWDTVGTIDRTDLAAQSFSLPNG
                     ENVTGSLTYTGTTTKILSTNAGMTPTNFNQNTARMIAMGRLEGTINPVTDADNEITGT
                     ATPNAFISISYTENGENKVLEGQANEAGTYRIAIPNGFIKPYIKLTTTIKQDQKRITL
                     DDITVEDVTPPSGEAVTQIIQLGDPFPDVAELVTNIYDHSDNTSGAGVTTTLQSAPDT
                     NVFGPTEAIVRLEDKAQNYVDIRVPVFIKDDETEIQDGKALRAADFSVNVKDIIELND
                     AELEQFILSKSGAKAFNIETGEDLSAELKVASTNLKKETGTYAATIQIDGLTKEIAIQ
                     VTGELKFNHVPETISFETMELNQQKNIAKRNADFDLSVLDSRGSGGKFSVTATVKTPL
                     TSTINSAHTLPNGLIFIDNTGAKKILSAEPITIFESQSASEMIVPIEWAEDQGILVEV
                     DAAEAYVDESYETTIEWTLTDAP"
     gene            4421..5824
                     /locus_tag="U0342_001647"
     CDS             4421..5824
                     /locus_tag="U0342_001647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxyribodipyrimidine photo-lyase"
                     /protein_id="HEM2422993.1"
                     /translation="MTSVMWFRRDLRVNDNKALYHACKEDDLLLLFQVNPAQFITGSP
                     SHQAFFASVAHFKQEIDKTAHLQIMFGEPIECFQQLKDSLPSWDKVYFNRDETGYGAK
                     RDEAAQAFFDEQKIEVQAFHDSYLHSAEEVKKSPTEYYKIFTPYYKKWREEIKETPFK
                     VTLKHENIRKESLFLKYEEQFAEMTSDLPILDIGERAANTRLANFIKHDVADYDKARD
                     FPELDKTSHLSRYLRTGEISIRTIWQTLQETEATEGRATFEKELCWRDFYNMIYVSFP
                     NQKNEPIQENYRFIEWENNREYFKAWQEGKTGFPLVDAAMRQLKETGWMHNRLRMITA
                     SFLTKDLLIDWRFGEKYFQQMLIDYDPASNIGGWQWAASTGTDAVPYFRIFNPTTQSQ
                     KFDSTGKFIRKYVKELANLPDKYIHQPEKMSETEQKEHGLLLGKDYPFPIVDHKERRK
                     LAIARYEFSKEHSRGNI"
     gene            5962..6375
                     /locus_tag="U0342_001648"
     CDS             5962..6375
                     /locus_tag="U0342_001648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2177 family protein"
                     /protein_id="HEM2422994.1"
                     /translation="MAQFLKLFLTSAVVFLIFDLFWLLVASKKMYQQFIGDLMGDVKL
                     APAVIFYFIYVVGVTFFVLLPGTEKGSLGYTILAGALFGLVCYATYDLTNLATLKDWP
                     ITMTIIDLVWGTAVTTVTSVIVYFINLHFFSGAGS"
     gene            6378..8144
                     /locus_tag="U0342_001649"
     CDS             6378..8144
                     /locus_tag="U0342_001649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family EDD domain-containing protein"
                     /protein_id="HEM2422995.1"
                     /translation="MESESKRLLQSMLNGAAEVISKKDELNRINVFPVADGDTGSNLA
                     SLMQAIIDHVSPREYSTKELLEEVASAALIGARGNSGMIFAQYLNAVAESYHHLESTF
                     DGLVQAFQNAVHKAYEALLDPKEGTILSVMKAWSEELAGTYEQERSFQQSLLNAQIVA
                     EKALINTEFQMPILRKNRLVDSGAKGFYYFITGLTNAYCGKAVSDPVRFTEVEQTAEH
                     RHVETSEPKYRYCSEFIIKQATISHQHLQEILAAKGDSLVIAGNEKQIKIHIHTNEPK
                     EVLSLMAAYGVMTYQKVDDMRLQYEVTKKPRAKIAIVTDSIADLPEAFLLEHQVHVLP
                     MNILAGEENFLDKLTVGPNMMQEKLRKQTKMSTAQPTIRTVDALLSFLEHKYEHVLVI
                     SVAAKLSGTYQLIKQRIKARELSSDWIRVIDSKLNSVAQGILVKQAVELVESGKSWES
                     IYPEVEQMIERTFIYVAVADLSPMVQSGRIPRVLGKLAQKLSLYPIVSLDESGDGKLI
                     GVSFSQKQSMKKIIKKIAKLQLKELAITHVSSRDTAAIWQKQLEKETGEISYLVDSSA
                     AIAISAGLGSVAVAGIKKEETI"
     gene            8144..8914
                     /locus_tag="U0342_001650"
     CDS             8144..8914
                     /locus_tag="U0342_001650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1295 domain-containing protein"
                     /protein_id="HEM2422996.1"
                     /translation="MYWTVTLALLVYFILWFIISKIKGKYSLVDIAWGGGFVVVAWTG
                     FLTTFSMTAQSITILVLVTIWGVRLFWHLARRNWNKPEDYRYVNMRKRWGTTLVNLKA
                     FLNVFVLQGVLLFIIALPITHSFANETATFAWWQILGIVIWIIGFIFEVGGDLQLENF
                     KKNPANKGKLLTTGFWSVTRHPNYFGEALSWWGVFLVAYTQLNDLWLITSPIVITLLL
                     LFVSGVPLLEKKYQDRADFQAYANKTSKFFPFIGKKGL"
     gene            9042..9584
                     /locus_tag="U0342_001651"
     CDS             9042..9584
                     /locus_tag="U0342_001651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464120.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1269 domain-containing protein"
                     /protein_id="HEM2422997.1"
                     /translation="MKKEKTVLIMNFDEESISYQAFSEMKRLHQERKIIGYQMAVVKH
                     EPGNKLVAQDFLDFTGADKNMKDSLIGMLIGILGGPFGILIGWMVGAIVGSMRDAGEV
                     KDALNVFERTLKTIPEGSTGVILIATEQELANVNDVAMDELHGRVQRMDEAIVAQEIK
                     SAQETEGKAKDSAKKHWFSK"
     gene            9811..10611
                     /locus_tag="U0342_001652"
     CDS             9811..10611
                     /locus_tag="U0342_001652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464121.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="formate/nitrite transporter family protein"
                     /protein_id="HEM2422998.1"
                     /translation="MDVESSPLMQKIDYSTRKKIDLVNNSILRYIVRAMLACLFLTLG
                     TAVAVMIGDKVDHFAPGLGKITYAFMFSWSLVMIIYMNAELGTSNMMYMTTGVYQKIV
                     KPGKALQILLLCIVCNLLGGILAGYLVSLTSVFHNLPADHFLFTAVSGKLEKAPLQIF
                     VEGIFANIVVNTAVLCTLRMKDDAGKVIAMIFIIFIFAFLGFEHVIANFSSFSLAFFA
                     SGGTLAAMTAGNVTVNLVLALLGNFVGGGLVIGLGYAWLNRTKSIYKD"
     gene            complement(10649..11755)
                     /gene="metX"
                     /locus_tag="U0342_001653"
     CDS             complement(10649..11755)
                     /gene="metX"
                     /locus_tag="U0342_001653"
                     /EC_number="2.3.1.31"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464122.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine O-acetyltransferase"
                     /protein_id="HEM2422999.1"
                     /translation="MTLQQKELFQKSPLLLENGETLSPVLVGYETYGTLSASRDNCIL
                     LEHALTGTAHAAKHFESDAPGWWDDYIGPGKTIDTDKYFLVCTNVFGGCSGTTGPSSI
                     NPKTGEPFRLQFPGFSIKDIIKVQRELLEQLGVTRIVSVIGGSMGGMQATEWAIDYAD
                     ITDSIINIASPLAAGPDAIGYNLIMRMAILNDPDFNGGNYVGQPEGGLATARMVGMMT
                     YRTSELFSKRFERFTVAESSPAAFSKEHFQIESYLQYQGDTFVERFDANSYLYLTKAI
                     DLFDVTAPAKDDLPAFAKIKIPYLLIGITTDQLFRIHDLRRGYELLKEWDVPVTYHEV
                     ASEYGHDAFLVEKEVPKFEPLIRSFLSNLPVKSI"
     gene            complement(11772..>12905)
                     /locus_tag="U0342_001654"
     CDS             complement(11772..>12905)
                     /locus_tag="U0342_001654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-acetylhomoserine
                     aminocarboxypropyltransferase/cysteine synthase"
                     /protein_id="HEM2423000.1"
                     /translation="LQETGNIYTRIMNPTTAVLEERLTLLEGGIGAVATASGMAAITY
                     SILNIAGSGDHIVAAATLYGGTHTLFSHTFKTFGIDVTFVDPNEPENFEKAIKDNTKA
                     VFIETIGNPDINIVDIEKVAEIAHASDIPLIVDNTFATAYLNRPFDFGADIVVYSATK
                     FIGGHGVAIGGAVIDSGKFNWANGKFPKLVVPDDSYNGLSYTNDVGAAAYITKLRVSL
                     LRDTGAALSPFNAFLLILGLETLSLRLEQHVKNAKQVANFLNDHPKVAWVNYPGLSDN
                     KYHELAQKYLPKGPGSIFTFGVKGGYEAGKKVIESVELFSHLANVGDAKSLIIHPAST
                     THQQLSEEQQLTAGVKPESIRLSIGIENADDIIQDLTKALEQI"
BASE COUNT         4189 a         2297 c         2781 g         3638 t
ORIGIN      
        1 aggaaagggg aaacaaaaat tgattatcaa aaaaacatta attgtaggat taattggcat
       61 aagttcagtc acactttttg caccggctgc ttttgcagta acttctgagg gagattcaaa
      121 agcaacagtt aaatttaaag ctgggacggg agtagttaac ccggttgacc cggaaaatcc
      181 aacgaaaccg attgacccgc tagatccaag taatccaact gatcctggaa ctggaaatac
      241 tggttcttta acattggatt atgtgtcatc tgttaatttt ggagaacatg aagtatcatc
      301 cacggaacaa agctactcct ccacatcaag aaaaccgttt atccaaatat ctgaccgtcg
      361 tggaactgga gctggttgga aagtgacagc aaccgcaacc gcttttcaaa atgaagacgg
      421 tgcagcttcc ctatcaggag cgacactatc atttaaaaac ggagaaacag catctgctag
      481 caacacagca acgacaccaa ctgctgctca aacagttgaa ttaccaacag atggaacttc
      541 gattgtgagt gttgtttcgg caaaagaatc ggaaggcatg ggaacatgga ttaatcgttg
      601 gtttggtgct acaccgaatg atacagctag tttaaacaac aatgttcaat taacgatacc
      661 agcaggaagc gcaacacttg gagaccatga agcgactatt acatggacat tatctgacgc
      721 gccaggagtt taaaaaattt gcgtttagaa ttcacttcta gacgcaaatt tttattaaaa
      781 acgatggaag gaaggtttaa ttgaagaaaa gttttcttag tttattgttc attattccgt
      841 tattagttac atgtagcaat tttgcagaag cacaggcggc agaaggagac gtcggttatt
      901 ccgttcaagc tcatatcccc gccaatcaaa tagataaaag acaaacttat tttgacctaa
      961 aaatgcagcc gaaacaaaaa caaacagtaa acattgatgt aatgaatagt tcaaatgaag
     1021 aaattcaagt ggaagcagca atcaactacg catccaccaa tcgaactggt gtcattgatt
     1081 acaccaaaaa tgatcttacg aaaaaagata aaagtttaga atatccactt ccagaactag
     1141 ctaaaattcc agacgaccaa aaactcctaa cgataccagt agatggcaaa aagaccgtcc
     1201 aagtgatgat tgaaatgcct gctgaatcga ttgatggcgt tgtattgggc gcagtagaat
     1261 ttaaaaagaa aaatactaac gagacgaaaa aaacaaaagg tgtctcctta aaaaatgaat
     1321 attcctatat tgtcggcatg caactagctg aaaccgacaa acaagtcaaa ccacatatga
     1381 atttactaag tatcaaaccg gcactcctta actatcacac agcgatagtt gccaaattac
     1441 agaacgacca accagtcata ctggaaaatc taagtattga tgcaaaagtc tatcaacaaa
     1501 attcggataa attactttac caaacaaaga aagcgaatat gaaaatggcg ccaaattcca
     1561 attttgattt tgggattgac ttggaaaatc aacctttaaa agaaggtaaa tacagattaa
     1621 aaatgactgc aacgaatggc gtggaaacct ggacttggga cgaagcgttc accattggta
     1681 aagaaggaca aaacttaaat aaagaagcag taaacctaga gaaaacgaac acatggcttt
     1741 acgttgcgat tgttgcaggt gtggttctta tagcactaat catcattttg gttataagaa
     1801 aacgaagaca aaaacaagaa aaataaagaa aggagctggc gaattggctt tcaaaaaatt
     1861 aatacttgta ttgaccattg cggctctttt tcttggtttt aaaatagtgg tagcagcgga
     1921 aaatgggagt agggacttag catcaaatga agcgatagtg actaatttta cagaattaaa
     1981 aacagctatt tccgaagata atggaataga tacagtgtat ttaggtgcag atgttgaatt
     2041 atcgggtgga attatcatcc cagcgacgaa aaagacattt actttatcag gaaaaaatcc
     2101 agcaacaggt gaaatacata ctttgacaga aacaatggca tcagctggtg cccagagcag
     2161 cgtgattaca gttaatacca acacaggtgc aaaagagaca actttaagag atattaatgt
     2221 tgtggggaaa aattattatg ggacgatttc ggtttatggg gctgcaaaaa acgtcgtaca
     2281 aaactatgaa aatgttcact atcaaggtcc gcaaatgata tataatttga atggaacggc
     2341 gaattttaaa ggaaccaatg atataacaat agcgtccgtt gtatctggtt ctgcggcacc
     2401 aaatgaagtc gcggaaatta aaggcgtgag cgtttccggt aagttgaata tcaatcacgc
     2461 aagttcgaat gcgaatagtg ctttttggtt cggtggtgga acggctgagg taaacacttt
     2521 tacagtggaa gaaaatgcag aggtgacgat actttctaat gggactggga tgttttatcg
     2581 ttcagggaca aaaccaattg atatagatgt gaaaaagaat gcgaagttag ctattacttc
     2641 taacaataat attttccgag acacgccggg cggagctgtt aaaatcgcgt caggtgcgga
     2701 tgtaactatg acaaaaactg ctggcgggaa tccacttcta tgggtggcag atgatattac
     2761 cgtaagtcct gatgcccgct ttatcttgaa taaaacaggc ggaactggct atattatcca
     2821 gttttataat gcgacggcga agttagatat aaatgatcct cggagctttt taattacgac
     2881 aaattcaaat acgccgatgt tttactggcc ttatgcgaac acctttaatt taaatgcgca
     2941 aatggtgaat tactgggata cggttggaac cattgatcga acggatttgg cagcgcaaag
     3001 ttttagttta ccaaatgggg aaaatgtgac ggggagtttg acgtacactg ggacaacgac
     3061 aaaaattctg tcaacgaatg cggggatgac gccgactaat tttaatcaaa acaccgcgcg
     3121 aatgattgca atggggcgac ttgaaggaac gataaatcct gtgacagacg cagataatga
     3181 aattacagga acagcgacac caaacgcttt tataagtatt tcatacacag aaaatgggga
     3241 aaataaggtt ttagaaggac aggcaaatga ggcgggaact tatcgaattg ctattccaaa
     3301 cggttttatc aagccttaca ttaaattgac tacaaccatt aaacaagacc aaaaaaggat
     3361 aacattagac gatataactg tagaagatgt gactccgcca agtggtgagg ctgttactca
     3421 aattatccaa cttggagatc cctttccaga tgtagccgaa ttagtaacaa atatttatga
     3481 tcattccgat aatacatctg gagcgggagt tacaactact ttacaaagcg cgcccgatac
     3541 taatgtattt ggacccacag aagccattgt tcgcttagaa gataaggcac aaaattacgt
     3601 ggatatccgt gtacccgttt ttattaaaga tgatgaaaca gagatacaag atggcaaagc
     3661 attacgagcg gcggactttt cggtaaatgt aaaagatatt atcgagctca atgatgccga
     3721 actggagcaa ttcattttaa gcaaatcggg tgcaaaagct ttcaatatcg aaactggtga
     3781 ggacttaagc gcggagttga aagtagctag caccaatttg aaaaaagaga caggcaccta
     3841 tgcggcaacg atacaaattg acggattaac gaaagagatt gcgattcagg ttacgggtga
     3901 gcttaaattt aatcatgtgc cagaaacgat ttccttcgaa acaatggagc ttaatcaaca
     3961 aaaaaatatc gcaaaacgaa acgctgactt tgatttatct gtgcttgatt caagaggctc
     4021 aggcggcaaa tttagcgtaa cagcaaccgt taaaacaccg ctgacatcca cgataaattc
     4081 ggcgcatact ttgccaaatg ggctcatttt tattgataat actggagcga aaaaaattct
     4141 ttccgctgaa ccaatcacca tttttgaatc gcagtcagct agtgagatga ttgttccgat
     4201 agaatgggca gaagaccaag ggattttggt agaagttgat gcagcggagg cttatgtgga
     4261 tgaaagctat gaaacaacaa tcgagtggac tttgacggat gctccgtaaa aacctgttag
     4321 caaaagttaa caggtttttt catgttataa gcccattgtt ttctaaatac actagtttct
     4381 cgtataatag cgttaagtaa tttgcgaaag gtggaagaaa atgacttcgg taatgtggtt
     4441 tcggagagat cttcgagtaa acgataataa agctctctat catgcttgta aagaggacga
     4501 tttgcttttg ttatttcaag taaatccagc acagttcatc acaggaagtc ctagccacca
     4561 agcttttttt gcaagtgtgg ctcattttaa gcaagaaatc gataaaactg cgcatttaca
     4621 aatcatgttt ggtgaaccga tagaatgctt ccaacaactt aaagattcgc taccaagctg
     4681 ggataaagtt tatttcaacc gtgatgaaac aggatacgga gcaaagcggg atgaggcggc
     4741 gcaagcgttc tttgacgaac aaaaaatcga ggttcaagcc ttccacgata gctatcttca
     4801 ttcagcggaa gaagtaaaga aatctccaac agaatactat aaaattttta ccccttatta
     4861 taaaaaatgg cgcgaagaaa taaaagaaac gccgttcaaa gtgactttaa agcatgagaa
     4921 tatccggaaa gaaagcttgt ttctgaaata tgaagaacaa tttgcggaaa tgactagcga
     4981 tttaccgata ttagatattg gtgaacgagc agcgaacacg agacttgcga attttattaa
     5041 acacgatgtt gctgactatg acaaagcgag agatttcccg gaactggata aaacaagcca
     5101 tttatcacgt tatttacgaa cgggggaaat ctcgattcgg acgatttggc agacacttca
     5161 agaaacagaa gcaacagaag gacgagctac atttgaaaaa gaactttgtt ggcgcgactt
     5221 ttataatatg atttacgttt cttttcctaa ccaaaaaaac gagccgatcc aagaaaatta
     5281 tcgttttatt gaatgggaaa ataaccgtga atatttcaaa gcgtggcaag aagggaagac
     5341 tggtttcccg ctcgttgatg cggcgatgcg ccagttgaaa gaaactggtt ggatgcataa
     5401 tcgactaaga atgattacgg cgtccttttt aacaaaagat ttgctgattg attggcgttt
     5461 tggcgaaaag tattttcaac aaatgctgat tgattatgat cctgcgagta atattggtgg
     5521 ctggcaatgg gcggcttcga ctggaacgga tgcggtgcca tactttagga ttttcaaccc
     5581 aacgacacaa tcacaaaaat ttgattcgac tgggaaattt attcgaaaat atgtaaaaga
     5641 gttagcgaat ctacctgata aatatattca tcaaccagaa aaaatgtcag aaactgagca
     5701 gaaagagcat ggcttgctgt taggaaaaga ctatccattt ccgatagttg accataaaga
     5761 acgacggaaa ttagccattg cacgctacga gtttagcaaa gagcattcta ggggaaatat
     5821 atagataatg agtcaatcat ttaattaatt gattgatttt tttgtggcag tattcacaaa
     5881 gaataagtct tgagcaacct tctaggagta agaacctggg tatgttaaaa ttcatttatc
     5941 aagtgataag ggggaatcac aatggcgcaa tttttaaagc tatttctaac gagtgcagta
     6001 gttttcttga tttttgatct tttttggtta ctcgtagctt ctaaaaaaat gtatcaacaa
     6061 tttattgggg atttaatggg ggatgtaaaa cttgctccag cagttatttt ttactttatt
     6121 tatgtcgttg gtgttacctt cttcgtttta cttcctggga cagaaaaagg aagtttaggt
     6181 tacaccattt tagcaggcgc gttgtttggt ctagtttgtt atgcgacgta tgatttgacg
     6241 aacttggcga cacttaaaga ttggccgatt acgatgacca ttattgatct cgtttgggga
     6301 acggctgtga caactgtgac ttcagtgatt gtttacttta ttaatctgca tttcttctcg
     6361 ggagcaggtt cctaatgatg gagtcagaaa gcaaacgtct attacaaagt atgctaaacg
     6421 gggcggctga agtaattagt aaaaaagacg agcttaatcg aataaatgtt tttcctgtag
     6481 cggatggcga cacgggtagt aatttagctt ctttaatgca agcgatcatt gatcatgttt
     6541 ccccgagaga atattcaacg aaggaattgc tagaggaagt agctagcgcg gcgctcatcg
     6601 gtgctcgtgg caattcaggg atgatttttg cgcaatactt aaatgctgtt gcggaaagtt
     6661 atcaccacct tgaatcgact tttgatggat tagttcaagc gtttcaaaat gcggtgcata
     6721 aagcttatga agccttgttg gatccaaaag aagggactat tttgtctgtg atgaaggctt
     6781 ggtcagagga gcttgctggg acgtatgagc aggagcgttc tttccagcaa tcgcttttaa
     6841 atgcacaaat agttgcggag aaagcattaa ttaataccga atttcaaatg ccaattttac
     6901 ggaaaaaccg gttggtggat tctggtgcga aagggtttta ttactttatc accgggctta
     6961 caaatgctta ttgtggtaag gcggtttctg accccgttcg ttttacggaa gtagagcaaa
     7021 cagcggaaca taggcatgtt gaaacaagcg agccgaaata tcgttattgc tcggaattta
     7081 ttatcaaaca agcgactatt tcacatcaac atttacagga aattctcgca gctaaagggg
     7141 attccttagt aattgcaggt aatgagaaac aaataaaaat ccatatccac acaaatgaac
     7201 caaaagaagt tttaagcctc atggcagcat acggcgtgat gacgtatcaa aaagtagatg
     7261 atatgcgtct gcaatatgaa gtcacaaaaa agcctcgcgc aaagattgct atagtgaccg
     7321 attcgatagc cgatttacca gaagcatttt tactggaaca ccaagtacat gtattaccga
     7381 tgaatatttt agctggagaa gagaattttc ttgataaatt gacggttggc ccaaacatga
     7441 tgcaagaaaa attaagaaaa caaacgaaaa tgagtacagc ccagccaaca atccgtacgg
     7501 tggatgcctt gttatctttt ttagaacaca aatatgaaca tgtgcttgtt atctccgttg
     7561 cggcgaaatt aagcggaact tatcaattaa tcaaacagcg gataaaagcg cgggagttgt
     7621 cctcggactg gatacgtgta attgattcta aattaaattc ggtcgcgcaa ggaattttag
     7681 tgaaacaagc agtagaacta gtggaatcag gtaaatcatg ggaatctatt tatcccgaag
     7741 tggaacaaat gattgagcgg acctttattt atgtggcggt tgcagatttg tcgccgatgg
     7801 tccagtctgg cagaattcca cgagtgttag gaaagcttgc gcagaaatta tcactctatc
     7861 cgattgtgag tttggacgag tccggggatg gcaaattgat aggcgtatcg tttagccaaa
     7921 agcaaagtat gaaaaaaatc attaaaaaaa tagcaaaatt acagctgaaa gagctggcga
     7981 ttacacatgt ttcttcaaga gacaccgcgg caatttggca gaagcaactt gaaaaagaaa
     8041 cgggggaaat cagctactta gtggatagtt cggcagccat tgcgattagt gctggactcg
     8101 gaagtgtcgc agttgcgggg attaaaaagg aggaaacgat atgatgtatt ggacagtaac
     8161 actcgcttta cttgtttact ttatactctg gtttattatt tcaaaaataa aaggaaaata
     8221 ttcgctcgtt gatattgcgt ggggcggcgg cttcgttgtt gtagcatgga ctggattttt
     8281 aacgacattt agcatgacag cgcaaagtat aaccatactt gttttagtga cgatttgggg
     8341 tgtccgtttg ttttggcatt tagcgcgccg gaattggaac aaaccagaag attatcgcta
     8401 cgttaatatg cgcaaacgct ggggaacgac attagttaat ttgaaagcct tcttaaatgt
     8461 cttcgtgttg caaggtgttt tattatttat tattgcttta ccgattacac atagttttgc
     8521 taatgaaaca gcgacattcg cttggtggca aatcctcggt attgttatct ggattattgg
     8581 ctttattttt gaagtcggtg gcgatttgca attagaaaac ttcaagaaaa atccagccaa
     8641 taaaggcaaa ttattaacaa ctggattttg gtcagtcaca cggcatccaa attattttgg
     8701 tgaagcactt agttggtggg gtgtattttt agttgcctat acgcaattaa atgatctctg
     8761 gctgattact agcccgattg ttatcacttt attattacta tttgtttccg gtgttccgtt
     8821 acttgaaaaa aaatatcaag acagagcgga ttttcaagca tatgcgaaca aaacgtcaaa
     8881 atttttccct tttattggta aaaaaggtct gtaaaaagta gttattttat cttgacattg
     8941 ctattaattg ctatttacat gagagagcga gtaaaatgaa agataggtac gataaatagt
     9001 atctgaatat aatactttat gaggcgagag gggtacaaca gatgaaaaaa gaaaaaacag
     9061 tgttaattat gaatttcgat gaagaaagca tttcttacca agctttttct gaaatgaaaa
     9121 gattacacca agaacgcaaa atcattggtt atcaaatggc ggttgtaaaa catgagccag
     9181 gaaataaact tgttgcacaa gattttcttg attttactgg tgccgataaa aatatgaaag
     9241 atagccttat tggtatgtta attggtattt taggcggtcc atttggtatt ttaattggtt
     9301 ggatggtcgg cgcaatcgtt ggttccatgc gagatgctgg cgaagtgaaa gatgctttaa
     9361 atgtatttga aagaacatta aaaacaattc cagaaggttc tacaggtgtc atccttattg
     9421 cgacagaaca agaattagca aatgtaaacg acgtagcaat ggatgagtta cacgggcgtg
     9481 tgcaacgtat ggatgaagct atcgtagctc aagaaatcaa aagcgcacaa gaaacagaag
     9541 gaaaagcaaa agattctgct aaaaaacatt ggtttagtaa ataaaaatat ttcaaacgag
     9601 gacagagaaa tctgttctcg ttttttgtgt tttaagagtg tgaaaacggg gaaattaaca
     9661 acataaaaca cccagataga aaaaaattca agatggtaac gcttaactca tttttatttt
     9721 ctgaaaacta tttgcatcaa attaaaaaca tgctacaata aacaagttgt gaatttcaca
     9781 agaaaatttt ttgtttggag atgaaataat ttggatgtgg aaagtagtcc attaatgcag
     9841 aaaattgatt atagtacgcg caaaaaaatt gatttagtaa ataatagtat tcttcgttat
     9901 atcgtgcgcg cgatgttagc atgtttattc ttgacactag ggactgcggt cgctgtaatg
     9961 attggtgata aagttgatca tttcgctcca ggacttggta aaatcacgta tgcatttatg
    10021 tttagttggt cgctcgttat gattatttat atgaatgctg agcttggtac ttctaacatg
    10081 atgtatatga caactggtgt ttatcaaaaa attgttaaac caggaaaagc attacaaatt
    10141 ttgcttttat gtattgtttg taatttattg ggtggaattc ttgccgggta cttagtttcc
    10201 ctaacatccg ttttccataa tttacctgct gaccatttct tatttactgc tgttagcggt
    10261 aagcttgaaa aagcgccact acaaattttt gtagaaggta ttttcgccaa tattgttgta
    10321 aatacggccg tgctttgtac acttcgaatg aaagatgatg ctggtaaagt cattgcgatg
    10381 attttcatta ttttcatctt tgcattctta ggatttgagc acgttatcgc caacttctcc
    10441 tctttctcat tagcattttt cgcttctggt ggaacacttg ctgcaatgac agcgggcaat
    10501 gtgaccgtca atttagtact tgctttactt gggaattttg taggtggagg ccttgttatc
    10561 ggactcggct atgcttggct taaccgaacg aaatcaattt ataaagacta attaaaggag
    10621 accccggaaa ttttccgagg tctctttttt atatactttt aacaggtaaa ttacttaaaa
    10681 atgaccgaat gagcggttcg aatttcggca cttctttttc aactagaaaa gcgtcatgac
    10741 cgtattcgga ggccacttca tgataagtaa ccggcacatc ccattctttt aaaagctcgt
    10801 aaccgcggcg caaatcatga attcggaaaa gttgatctgt cgtgatgcca atgagcaaat
    10861 acggaatttt aattttcgca aaggcaggca aatcgtcttt cgcgggagca gtaacatcga
    10921 ataaatcaat tgcctttgtt aaatataagt agctattcgc gtcaaatcgc tcgacaaaag
    10981 tatccccttg atattgcaaa tacgattcaa tttgaaaatg ctcttttgag aaagcggcag
    11041 gagaagactc ggcgacagtg aaacgttcaa agcgtttcga gaaaagttcg ctcgtccggt
    11101 aagtcatcat cccaaccatt cgcgcagtag caagtccgcc ctcaggttga ccaacatagt
    11161 tgcccccatt aaagtcaggg tcgttcaaaa ttgccatgcg cataatcaag ttgtaaccaa
    11221 tcgcatcagg tccagcagcg agcggggagg cgatattgat aatgctatcc gtgatatcgg
    11281 cataatcaat cgcccattcc gtcgcctgca taccacccat cgatccgcca atcactgaaa
    11341 caattcgcgt aaccccaagt tgctccaaaa gttcacgctg cactttaata atatctttaa
    11401 tcgaaaaacc tggaaactgt aagcggaaag gctcgccagt ttttggatta atcgaagaag
    11461 gtccagtcgt gccactacaa ccaccaaata cattggtgca aaccagaaaa tatttgtctg
    11521 tatcaatcgt tttccccgga ccaatataat catcccacca accaggagcg tcactctcaa
    11581 aatgtttcgc cgcatgtgcc gtcccagtaa gggcgtgttc taataaaatg caattatcgc
    11641 gtgaggcgga aagtgtcccg tatgtttcat agccgactaa aacagggctt aatgtttctc
    11701 cattttcaag tagaagagga cttttttgaa atagttcttt ttgttgtaag gtcacttctc
    11761 ttcacttcct cctaaatttg ctctaatgct ttcgttaaat cttggataat atcatcggca
    11821 ttttcgattc cgatagatag gcgaatggac tctggtttca cgccagctgt taattgttgt
    11881 tcttcgctta gttgttgatg ggtcgtggaa gctggatgga tgataagcga ttttgcgtcg
    11941 ccaacattcg ctaaatgcga gaataattcc acggattcaa tcactttttt accagcctcg
    12001 tagccacctt taactccaaa tgtgaaaatg gagccaggtc cttttggtaa atatttttgg
    12061 gctaattcgt ggtatttgtt gtcgctcaaa cctggataat tcacccaagc tacttttgga
    12121 tggtcattta agaaattggc aacttgtttc gcatttttca cgtgttgctc aaggcgtaag
    12181 gatagtgttt ctaggcctaa aatgagtaag aaggcgttga acggagaaag tgctgcgcca
    12241 gtatcacgaa ggagtgagac gcgtagtttg gtaatataag ccgccgcgcc aacgtcattt
    12301 gtataagaca aaccattgta gctatcatct ggtaccacta gctttggaaa tttgccattt
    12361 gcccagttaa atttacctga gtcaataacc gcaccaccaa ttgcaacccc gtgaccacca
    12421 atgaattttg ttgccgagta aacgacgata tctgcgccaa aatcaaacgg gcgattcaaa
    12481 taagcggtcg cgaatgtgtt gtcaacgatg agcgggatat cggatgcgtg cgcaatttct
    12541 gctacttttt cgatatcgac aatattaata tcaggattcc caattgtttc tataaaaaca
    12601 gctttcgtat tatctttaat cgctttttca aaattttcag gttcattagg gtcaacaaac
    12661 gttacgtcaa tcccaaaagt tttaaacgta tgggaaaata gcgtgtgcgt tccgccatag
    12721 agtgttgcgg ctgcgacgat atgatctccg gaacccgcaa tatttaaaat agagtaagta
    12781 atagcagcca tcccagaagc cgttgcaacc gcaccaatac cgccttcaag tagcgttaac
    12841 cgttcttcta aaacagctgt agtcggattc ataattcgtg tataaatatt tccagtttct
    12901 tgtaa
//
LOCUS       DASEAA010000072        12891 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.072, whole genome shotgun sequence.
ACCESSION   DASEAA010000072 DASEAA010000000
VERSION     DASEAA010000072.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12891
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.072"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            193..1908
                     /locus_tag="U0342_001655"
     CDS             193..1908
                     /locus_tag="U0342_001655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein/permease"
                     /protein_id="HEM2423001.1"
                     /translation="MIDKRLFQLVEKKSLVLLILFRVLSLGLMIGLWFVFAQQLTYYL
                     EGQSVDWLWLIGTVLVVLVGKAILTKLAEKQIYQASAELRLSMRRAVMEKAFRLGNNE
                     GQLPASTLTQLAVDGIEQLEIYYSRFLPQLFYCLIASLMIFGSLVGFAWQPAIVLLIC
                     MPMIPIVIMAVMKIAKRILSGYWSDYTNLGTKFHENLSGLSILKAYNQDKYKQEEIVS
                     DAERFRKATMSLLSMQLNSITIMDIISYSGAALGIGMSLIMFTNGNISMTGMLMFLLL
                     SAEFFIPMRQLGSLFHVAMNGISACSKLFAYLELKEQVYGSEELAKPLEKMEVRHLTY
                     TYEEGKAKALQDISVNFNKGSFSALVGKSGSGKSTFVRVLLNQLPGYQGEIVWNDVPL
                     ASLSGETIRKQAVLVDNHGYLYANRIRENLLIGNPAANDSDLWNVLEQVSLADFVRKL
                     PEQLNENLEENGSNLSGGQRQRLLLARALLCQAEVYVFDEITSGVDLESEKIILLVLQ
                     KLAKEKIVLFISHRLYNVLDADQVLVFDAGKLLEVASPERLQQESNYFKNYFLEEEAL
                     LKGGA"
     gene            1910..3556
                     /locus_tag="U0342_001656"
     CDS             1910..3556
                     /locus_tag="U0342_001656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423002.1"
                     /translation="MSEWTIIGWLLKFVKPLRGKMVLAILLGIISNLSVIMISLIGTY
                     GIITVILQQHLNPYKWLFVMVACGVVRGLARYSEQYLNHDIAFRLLAIIRERIFATLR
                     KLGPARLSGKKSGDLVAAITTDVEALEVFFAHTISPVFIALGTTIVTVGFLASYDVGL
                     ALILLLGQILVGVVLPVISYKRNKKIGTAYQQEFVGLNQMVMESIASLQDIFQFKLGE
                     ERLSKLETQGEKLNKQYKKRIKQGSELQIFGEWVLIGTATLILVLGSLWQLPLETVLI
                     GTVLSLSSFGSVLALNALGTALLTTFASGKRLYTLTEEKPVVLFNGQLELSDFESVEL
                     DKVSFSHDGKQPLLNEISLALPKRKWLGIGGESGSGKSTLVKLLMRYWDPKGRIKLND
                     NALPEITESSLHRLEGVMEQSTFLFEDTLGNNIRLGKKDATLEEVKEAARKAAIDTWI
                     ETLPEGYDTIIGGQSRNLSDGERQRIGLARLFLHDAPLLLLDEPTSNLDYINEQAILN
                     TLRSEIQDKTVLVISHRATTLDLAEEQLFIENGALKRAAK"
     gene            complement(3593..3901)
                     /locus_tag="U0342_001657"
     CDS             complement(3593..3901)
                     /locus_tag="U0342_001657"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2423003.1"
                     /translation="MYLKEKKNYLYCTAVIQTTGKVSYEQLVEHLEALRAKTVKEPGC
                     VLFEIVPLESALGRFALWEIWQNQEAFYYHHEQNYTKEFFAAELDTVEFFESSEKVNL
                     "
     gene            3969..4315
                     /locus_tag="U0342_001658"
                     /pseudo
     CDS             3969..4315
                     /locus_tag="U0342_001658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464659.1"
                     /note="frameshifted; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
     gene            4340..5479
                     /locus_tag="U0342_001659"
     CDS             4340..5479
                     /locus_tag="U0342_001659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014654245.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 26/phosphotriesterase HocA family
                     protein"
                     /protein_id="HEM2423004.1"
                     /translation="MINNEIREVIGLHQINENDQKLTVENAEVIIRNHVLIKLILNQA
                     DCYKEIDYNLELTDTNELVGRKNAKPKALTTKTILKAKTKELRLKINKISHRIELKLG
                     VQHFENIYFEEGMLFTKENVQEKIAANYGSDWLSILDKAKLKVKTRQTIQQGSIFSYP
                     IGNEYGFGLVIGCFQAFRKQKIMPQDSSHYLRLMMGVPLVIRSFNYTSKQNTVDLSLL
                     KKQELLNPEFIMDDLVSRGDFPIIGRVDLEEADISFPMNFSFNGVSTTYAGYQAIGEP
                     DRDIIKKYEEEITVRFDWGFGSKTMPAKEFLKRSSGKESFLPYSGLGMTPIAGYSKKL
                     VSPKSIFSEEELKQIYAVLDINGEMSFDDFNENYNGLTAQNILSI"
     gene            5599..6069
                     /locus_tag="U0342_001660"
     CDS             5599..6069
                     /locus_tag="U0342_001660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423005.1"
                     /translation="MEITLQQPTSADFSFIEWLWGDLATTEVLGGPFSFPEEMRMDWL
                     KSKSQASNAYFIIKKGIESVGEVSFRDFEKGTAHLNIKVAACYRGQRIAQKALQLFLD
                     FFQTDCGGIVMLDEVRRKNEAGIGFLVKAGFEVIEEKEWTMVLKWSAQAEGGFE"
     gene            6066..6356
                     /locus_tag="U0342_001661"
     CDS             6066..6356
                     /locus_tag="U0342_001661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423006.1"
                     /translation="MSKERCACCNCLTIDVRGEFEICPICFWEDEGYFVFDKEEIYSH
                     YQDIFSIEDLLNIRSSANNGLTLLDARQNFKLFGACELAMKKYVREPNAEEL"
     gene            6636..8171
                     /locus_tag="U0342_001662"
     CDS             6636..8171
                     /locus_tag="U0342_001662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin N-terminal domain-containing protein"
                     /protein_id="HEM2423007.1"
                     /translation="MKKTIKITTSLLLSFACVFSIGDFTKPHTVEAETVYSLTDSKPI
                     NEIFPDPKLAQVVANWLKLPSATSPVTQNQLNTVKSLHFDSKGVQSLEGVEYLKNLTQ
                     VFGYGNQVSDLGPLSNLTQLEIIQMPRNQISDLTPIANLTALMSLDFEFNNLQTIEPI
                     KNLTNMLELNVSANPISDISAVKNMTQLEFLTIRDCEVSDLSPVENLSNMLMFWAGRN
                     NISDITPLKNMSKLLGLSLFGNQIKDVSVIKNLTSLEDFDIKANQVSDISSLATSTTL
                     ETLTLSFNQIIDISSLKNLTNLTRLELANQTRVLDAVEVDDPLILPAPVIDENGSRVQ
                     PTKVSHAGIYANGEITWEGLQSNYILNYEYNLPVAIGSLTTTYSGKITQPLLEKPVNP
                     ITPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVDPVTPVNPSNQVNPI
                     DPVKSVLQVTETLMKQTTSVNTIVAKDNRNLPKTGDSGMHSSLVSGLMLAVSSVILLR
                     KRK"
     gene            complement(8206..8553)
                     /locus_tag="U0342_001663"
     CDS             complement(8206..8553)
                     /locus_tag="U0342_001663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423008.1"
                     /translation="MKLTKENFQKLDQIHLSLENRHSMSEIIAILSESYIEITQNGVV
                     KDFSYYKSLTTLGNSSLEIMDYDIKILDETKVLSYYKLKNTSENSYTMRSNVWIIENG
                     SWKLTFHQGTKIV"
     gene            complement(8618..9190)
                     /locus_tag="U0342_001664"
     CDS             complement(8618..9190)
                     /locus_tag="U0342_001664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent Clp protease proteolytic subunit"
                     /protein_id="HEM2423009.1"
                     /translation="MAENTKNENITNILTQKLIDTRTVLIYGEINQELAEDVSKQLLL
                     LESISNDPITIFINSQGGHVEAGDTIHDMIKFIKPTVKVVGTGWVASAGITIYLAAEK
                     ENRFSLPNTRYMIHQPAGGVQGQSTEIEIEAKEIIRMRERINRLIAEATGQSYEKISK
                     DTDRNFWLSVNEAKDYGIVNEIIENRDGLK"
     gene            complement(9321..9728)
                     /locus_tag="U0342_001665"
     CDS             complement(9321..9728)
                     /locus_tag="U0342_001665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2423010.1"
                     /translation="MFNQAKRISTFFTFNGNGEEAFNFYLDTFPDAKKIGLTYFTKPE
                     QGGDIGKVLNATFEIKGASFMIMDMTNNASPDFSWATTTLYFADTEDEFDTLFEKLAK
                     EGTVMMGPEAVEALRKVAWVTDKYGITWQLAFV"
     gene            9820..10299
                     /locus_tag="U0342_001666"
     CDS             9820..10299
                     /locus_tag="U0342_001666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional precorrin-2
                     dehydrogenase/sirohydrochlorin ferrochelatase"
                     /protein_id="HEM2423011.1"
                     /translation="MKYPIMLDITGKRVVIIGGGKVALRKVKGLLHTGADILIVGLDV
                     LPEIKELQVQVKEEAYRAEHLIGAFLIFICTNNPEVNQMVLKDRLPEQLVNDTTEQKN
                     SDFFNMATVSKNELLVGISTGGGNPGYAKKVKREVRQLVENLETEEIGKRNKNDKTC"
     gene            10418..11782
                     /locus_tag="U0342_001667"
     CDS             10418..11782
                     /locus_tag="U0342_001667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SLBB domain-containing protein"
                     /protein_id="HEM2423012.1"
                     /translation="MSQMSILEKIKDAGVVGCGGAGFPTHAKFSGEVEYLIINAAECE
                     PLLKTDHFVMRNHAVETIKAIEMVKSQVGAEFAVIATKRYYTEEIAALRSAITELDAS
                     VTIHEMDNVYPTGDEQVMVFEVTGRVVPPSGIPLMVGCIVSNVSTMWNVFHAIQDDAP
                     VVRKQLTVTGAVGEPKLLDVPVGTPFEVCLAAAGGTNLDEYLFLDGGPMMGKLNDKST
                     IAEKVVTKTTSGLIVAEDTGYLHKLHYQTVEQIFNETKSACIQCSLCSDLCPRKQLGH
                     DIHPHKVMRHFAVAEDITDIKPDPIWEEAMICCECGICEVIACPMGLSPRQVNIHVKK
                     ELLKQGVRYQTDKKEFTPDPMREYKSIAPKNILIKMGLQQYADVHLETMHYLDVDEVF
                     IPTKMHIGAPSIPVVSEGDIVKKGDLIAKIPDASLGANIHASIDGQIIRITEEQVHIK
                     KVMS"
     gene            11779..12333
                     /locus_tag="U0342_001668"
     CDS             11779..12333
                     /locus_tag="U0342_001668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMC domain-containing protein"
                     /protein_id="HEM2423013.1"
                     /translation="MKMDTLGFLELNSISKGIEAVDTMLKAANSELIYAKASCPGKYY
                     ILIAGTVDSVAQSIEAGTKIGAANIVGNLVIPRVSDQVIKAINKTEVPDEMNAVGVME
                     YYSCSGSIIAADAAVKAADVQLMDIRLATGIAGKSFVVLTGDTAACEAAVEAGLAAAK
                     EEALLINKVVIPRPRKEVFESLIY"
     gene            12481..12831
                     /gene="eutS"
                     /locus_tag="U0342_001669"
     CDS             12481..12831
                     /gene="eutS"
                     /locus_tag="U0342_001669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization microcompartment
                     protein EutS"
                     /protein_id="HEM2423014.1"
                     /translation="MSFDDNKERVIQEYVPGKQVTLAHLIANPNRDIYTKLGLEEGAS
                     AIGILTITPSEASIIASDIATKSGDVRIGFIDRFSGSVVLTGDVSSVESALQQVVYSL
                     HEILDFSIPKITRS"
     gene            12846..>12891
                     /locus_tag="U0342_001670"
     CDS             12846..>12891
                     /locus_tag="U0342_001670"
                     /inference="COORDINATES: protein motif:HMM:NF022128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ethanolamine utilization protein EutP"
                     /protein_id="HEM2423015.1"
                     /translation="MMVMGSVGCGKTTLC"
BASE COUNT         4155 a         1970 c         2777 g         3989 t
ORIGIN      
        1 ataaaaaaaa taaatgacaa tgagaatcat tatcaaacgt tgatttttgt gatataataa
       61 acaaagattt attaatgggg gttagcaagc aaatgggaaa agtagtattg aaaatggctt
      121 atactgccga aaaatcaaag aaaatattaa ggtatcttga aacgaacctt aatgtaactc
      181 gggggaagta caatgattga taagcgtttg tttcaactgg ttgaaaagaa atctttagtg
      241 ttattaattc tttttcgtgt gcttagttta gggctgatga ttggtctttg gtttgttttt
      301 gctcaacaat taacgtatta tttagagggc caaagtgtcg attggttatg gcttattgga
      361 acggttttag ttgttttagt tggtaaagcg atacttacca aattagcgga gaaacaaatt
      421 taccaagcat cggcggaatt gcgtttatca atgaggcgcg ctgtgatgga aaaagctttt
      481 cggttaggca acaacgaagg acagctaccg gcatcaactt taacgcagct cgcggtagat
      541 gggattgaac aattagaaat ttattattca cgttttttac cgcaattatt ttattgtctc
      601 atcgcttctt tgatgatttt tggaagttta gttggatttg cttggcagcc ggcgattgtg
      661 ctattaattt gtatgccgat gattccgata gttattatgg cagtgatgaa aattgctaaa
      721 cggattttga gtggttattg gtcggattat acgaatttag gaaccaaatt tcatgaaaat
      781 ttaagtggct tgagtatttt gaaggcttat aaccaagata aatataagca agaggaaatt
      841 gtttctgatg cggaacgttt ccgtaaagct acgatgagtt tgttatcgat gcaactgaat
      901 tcgattacga ttatggatat tatttcgtat agtggggcgg cacttggtat tggtatgtcg
      961 ttaattatgt tcacaaatgg gaatataagc atgactggta tgttgatgtt cttactacta
     1021 agcgccgaat tctttattcc aatgcgtcaa ctcggatctt tattccatgt ggcgatgaat
     1081 ggaattagtg cttgcagtaa attgttcgct tatttagagt taaaagagca agtttatggc
     1141 tcagaagaac tagctaaacc gttagaaaaa atggaagttc gtcatttgac atatacatat
     1201 gaagagggta aagctaaagc actgcaagat atatcagtaa atttcaataa aggaagtttt
     1261 tcagcacttg tcggaaagtc tggttcagga aaaagtacat ttgtccgagt attattaaat
     1321 caattacctg gttatcaagg ggaaattgtt tggaatgatg tacctttagc tagtttgagc
     1381 ggggaaacta ttcgtaaaca agctgtgtta gtagataatc atggttatct ttatgcaaat
     1441 agaattcggg aaaatttatt aattggtaat ccagctgcta atgatagcga tttatggaat
     1501 gttttggagc aggttagttt ggctgatttt gttcggaagt tacccgagca attaaatgag
     1561 aatttagaag agaatggaag taatttatct ggtgggcaaa gacagcgatt gttactggcg
     1621 agagcattgc tatgtcaagc ggaagtctat gttttcgatg aaattacgtc tggtgtggat
     1681 ttggaaagtg aaaaaattat tcttttggtg ttgcagaaat tagctaaaga aaaaatcgtg
     1741 ctctttattt cgcatcgctt atataatgtt ttggatgcgg atcaggtact cgtttttgat
     1801 gcggggaaat tgctggaagt ggcgagccca gaacgattac agcaagaatc taattacttc
     1861 aaaaactact ttttagaaga agaagcattg ctgaaagggg gagcatgaca tgtcagaatg
     1921 gacaattatt ggctggttgt taaagtttgt taagccatta cgaggaaaga tggttttggc
     1981 gattttactt ggtattatta gtaatttatc ggttatcatg atttctttaa tcggtacgta
     2041 tggcattatc acggtaattt tacagcagca tctgaatcct tataaatggc tctttgtaat
     2101 ggttgcttgt ggggtggttc gcggtttggc acgatattcg gaacagtatt taaatcatga
     2161 tattgccttt cgtttgcttg caattattcg tgaacgtatt tttgcgactt tgcggaaact
     2221 aggacctgct cgtttatctg gaaagaaaag tggtgattta gttgctgcga ttacaacaga
     2281 tgtcgaggcc ttggaagtgt ttttcgcgca tactatttca ccagttttta tagcactagg
     2341 tacgacgatt gtaactgttg gctttttggc aagctatgat gttggtttag cgctgatact
     2401 tttgttagga caaatcttgg ttggtgtcgt tttgccagtg attagttata aacgaaataa
     2461 aaaaatcgga acggcttatc aacaagaatt cgttgggctc aatcaaatgg taatggaaag
     2521 cattgcaagt ttacaagata tattccagtt taaattgggc gaagagcgtt tgagtaaatt
     2581 agaaacacaa ggtgaaaagc tcaataagca gtataaaaaa agaataaaac aaggaagcga
     2641 actccaaata tttggtgaat gggtgctaat tggtacggcg actttaattt tagtgctagg
     2701 tagtctttgg caattaccgc ttgaaacagt attaattgga actgtgctta gtctgagctc
     2761 ttttggatcg gtattggcat taaatgcttt aggaacagcg ctgttaacta cttttgctag
     2821 tggtaagcga ttatatacat taacagaaga aaaacctgtg gtattattta acggccagct
     2881 tgaactatcg gattttgaaa gcgtggagtt agataaagtg agttttagtc atgatggaaa
     2941 acaaccactt ttaaacgaaa tttcgctagc gcttcctaag aggaaatggc tcggcatcgg
     3001 tggggaaagt ggcagcggga aaagtaccct agtaaaacta ctgatgcgtt actgggatcc
     3061 aaaaggtcgg attaaattaa atgataacgc actccctgaa attacagagt cttcgcttca
     3121 tcgactagaa ggtgtaatgg agcaaagtac attcttgttt gaagatacac ttggtaataa
     3181 tattcgttta ggaaaaaaag atgctacttt ggaagaagtt aaagaggccg cccgaaaagc
     3241 tgctatcgat acatggattg agactttgcc agaaggatat gacacgatta ttggcgggca
     3301 atcacgaaat ttatcagacg gcgaacgcca gcgaattggc ttagctagac tatttctcca
     3361 tgatgccccg ttgttattat tagatgaacc aacaagcaat ttggattaca ttaatgaaca
     3421 agcgatttta aacacgctcc gttcagaaat tcaagataaa acggtgctcg taatttctca
     3481 ccgagcaaca acattagact tggcagaaga acaattattt atagaaaatg gtgcattgaa
     3541 acgtgcagca aaataataaa aacagcttgt ataaattaca agctgttttt atttataaat
     3601 ttaccttctc tgagctttcg aaaaattcaa ccgtgtcaag ttccgctgca aaaaattctt
     3661 tcgtatagtt ctgttcgtga tgataataaa aggcttcctg attctgccaa atttcccaca
     3721 aagcaaatct gccgagtgca ctttctaaag gaacaatctc aaataaaaca catcctggtt
     3781 ctttcactgt tttagcgcgt aacgcctcca aatgttcgac cagctgttca taagaaactt
     3841 ttccggtagt ttgaataact gctgtgcaat ataaataatt ctttttttct tttaaataca
     3901 tttcttctcc tcctttgact atgttaagct taaggtatgg agtatacccg atagcaagga
     3961 ggaactagat gtatattaaa gattttgcca ttaaaacggg gctttcgatt gatacgcttc
     4021 gatattacga ggaagaagaa ttattaattc ctgctagaaa tgaaaaaaat tatcgtgttt
     4081 atacggaaga agattattgc tgggtacagc ttttactaaa atgaagcaaa cagggatgac
     4141 aataacaaac attaaaaatt ttgctgcatt acaaaagcaa ggagacatga cacttccaaa
     4201 tcggatagaa attttaaata atcatatgaa aaacttgtac gagcaacaga aagatttggc
     4261 agaaacaatt tcctttgtgg ctaaaaaagt ggatggatat cgagagaagt tataaataca
     4321 acaggaaagg cgagtagaga tgattaataa tgagatacga gaagtgatcg gattacatca
     4381 aattaatgaa aatgatcaga aattgactgt ggaaaatgca gaagtaatca tcagaaatca
     4441 tgtgctgata aaattgattc ttaatcaagc tgattgctac aaagaaatcg attataatct
     4501 agagcttaca gatacaaatg aattagttgg ccgaaaaaat gcaaaaccaa aagcattgac
     4561 gacaaaaaca attttaaaag ctaaaaccaa agaattaagg ttgaaaataa ataaaatcag
     4621 tcatcgaata gagttaaaac taggtgttca gcattttgaa aatatctatt ttgaggaagg
     4681 gatgcttttc acgaaagaaa atgtacaaga aaaaattgct gcaaattatg gaagtgattg
     4741 gttgagcata ttagataaag caaagctcaa agtgaaaacg agacaaacca ttcagcaagg
     4801 ttccattttt tcttatccaa ttggaaatga atatggtttt gggcttgtga ttggttgttt
     4861 tcaggcgttt cggaaacaaa aaataatgcc tcaagatagc tcgcattacc tccgattgat
     4921 gatgggagtt ccgcttgtta ttcgtagctt taactataca agtaaacaaa atacagttga
     4981 tttatcactt ttgaaaaaac aggagctctt aaatccggaa tttattatgg atgatttagt
     5041 gtcgcgtggg gattttccga ttattggtag ggtagatttg gaagaagcgg atatttcctt
     5101 tccaatgaat ttttctttta atggagtgtc tacaacgtat gccggttatc aagcaatagg
     5161 tgaaccagat agggatatta ttaaaaagta cgaggaggaa attaccgtta gatttgattg
     5221 gggatttgga agcaaaacga tgcctgcgaa agaatttttg aagagaagta gtgggaaaga
     5281 gtcatttcta ccttattctg gattaggaat gaccccaatt gctggatatt cgaaaaagtt
     5341 agtttctcct aaatccatct tttcagaaga ggaactaaag caaatttatg cggttttaga
     5401 tataaacggg gaaatgtcgt ttgatgattt taatgaaaat tataacggcc ttaccgctca
     5461 aaatatttta tcgatttgat ggctttagtg gtactaatta aaaactttcc caatttgcac
     5521 caaatgataa cattgtaaaa tgcaatcatc aagttcatta gtgaactttt aactaccaag
     5581 taaacaagga ggaatttcat ggaaatcact ttacaacaac ctacctcagc tgacttttcc
     5641 ttcattgaat ggttatgggg agatttggca acgacagaag tactcggtgg gccattttct
     5701 tttcctgaag aaatgcgaat ggactggctc aagtcaaaat ctcaagcgag caatgcttat
     5761 tttattataa aaaaaggtat agaatctgtt ggtgaagtta gctttcgtga ttttgaaaaa
     5821 gggacagctc atttaaatat taaagtggct gcatgttacc ggggccagcg aatcgctcaa
     5881 aaagctttgc aattattctt ggattttttt caaactgatt gcggtggaat agttatgttg
     5941 gatgaagtta gacggaaaaa tgaagcaggc attgggtttc tcgtgaaagc tggtttcgaa
     6001 gttatagaag aaaaagaatg gacgatggtg ctcaaatgga gtgctcaagc agaaggaggt
     6061 tttgaatgag taaagaaaga tgtgcatgtt gtaactgttt aacaattgat gttagaggcg
     6121 agtttgagat ttgtccgata tgtttctggg aagatgaagg ttattttgtc tttgataagg
     6181 aagagattta ttctcactat caagatattt tctcgataga agatttgtta aatattcgct
     6241 ctagtgctaa caatggttta acgttattag acgcacgaca aaatttcaaa ctgtttggtg
     6301 cttgtgagtt ggcaatgaaa aaatatgtaa gagagccaaa tgcagaggaa ttataaaaaa
     6361 tgagcaagta agttagattt aaaagcctaa cttacttttt tagtagttaa aaaagctgat
     6421 ttcttatatt ggttcatttt ttagacatat tttaatgaaa aataaatggg tatgataagt
     6481 acggtgaaag caatattacc aagggtgaat gggaattagc ttccgaataa aaggagggaa
     6541 aataatttcc tgaaacaaga aaaattgcct ccttattctg ttgatttgat tatataaaca
     6601 gagtattatg ttggttgaca atcaaggagg atactatgaa aaaaactatc aagattacaa
     6661 ccagtttact tttgagcttt gcttgtgtat ttagtattgg ggattttact aagccacata
     6721 cagtcgaagc agaaacagtc tattcgctta cagattcaaa gccgattaat gaaatttttc
     6781 ctgatccaaa gctcgcgcaa gttgtagcaa attggttaaa gcttccctct gcaactagcc
     6841 cagttacgca aaaccaattg aatacagtta aatctttgca ctttgattca aaaggtgttc
     6901 aaagtcttga aggagtagaa tatttaaaaa atctcacaca agtatttggc tatggtaacc
     6961 aagtgagtga tctagggcca ttaagtaatt taacgcaact agaaatcatt cagatgccaa
     7021 gaaatcaaat aagtgattta accccaattg cgaatttgac agcattaatg tcacttgatt
     7081 ttgagtttaa taacttacaa acgattgaac cgataaaaaa tttaacgaac atgttagaac
     7141 tgaatgttag cgccaatcct atttcggata ttagtgccgt taaaaacatg acacaactgg
     7201 aatttttgac tataagagac tgtgaggtaa gtgatttatc gccagtcgaa aatctgtcta
     7261 atatgctgat gttttgggcg gggagaaata atattagtga tattactcca ctcaaaaata
     7321 tgtccaaact gcttggttta agtttatttg ggaatcaaat caaggatgtg agtgtaatta
     7381 aaaatcttac tagccttgaa gacttcgata taaaagcgaa tcaggtgagc gatattagta
     7441 gtttagcaac atcaactaca ctcgagacat tgactcttag tttcaaccaa ataattgata
     7501 tttcgtccct gaaaaatttg accaatttaa ctaggttaga actagcgaat caaacgcgtg
     7561 tattagatgc ggttgaggta gatgatccat tgattttacc cgctccagta attgatgaaa
     7621 atggcagcag agtacaaccg acaaaagtaa gtcatgcggg tatttatgca aatggcgaga
     7681 ttacatggga agggttgcaa agtaattata ttctaaatta cgagtataat ttacccgtag
     7741 caattggttc gttaacaaca acgtattctg gtaaaattac gcagccactg ttggagaagc
     7801 ctgttaatcc gattaccccg gtagatccgg tagatccggt agatccggta gatccggtag
     7861 atccggtaga tccggtagat ccggtagatc cggtagatcc ggtagatccg gtagatccgg
     7921 tagacccagt agacccagta gacccagtca ctccagtaaa cccgtcaaat caagtaaatc
     7981 caattgatcc agtgaaatca gttcttcaag ttactgaaac tttaatgaaa cagactactt
     8041 ctgttaatac gatagtagct aaagataata gaaatttacc gaaaacaggg gatagtggaa
     8101 tgcattctag tttagttagt ggtttaatgc tagctgtttc tagcgtgatt ttattacgaa
     8161 aacgaaaata aaaaaaggaa tttggctttt agtcaaattc cttttctata cgatttttgt
     8221 accttggtga aaggtgagtt tccacgagcc attttcgata atccagacgt tgcttcgcat
     8281 tgtatagcta ttttcacttg tgtttttcaa tttataatag gataagacct tcgtttcgtc
     8341 taaaattttt atgtcataat ccatgatttc taaactgcta ttgccaagtg ttgttagcga
     8401 tttataatag gaaaagtctt taacaacacc gttttgtgtg atttcaatat aagattcgct
     8461 taaaatagcg ataatttcgg acatggagtg acggttttcg agtgataaat gaatttgatc
     8521 aagtttttga aaattttctt tcgttaattt cattttaagt cctccataaa gggaataaaa
     8581 aaggttcact tcattttgta agtgaacctt ttggttttta ttttaagcca tcgcgatttt
     8641 cgatgatttc atttacgatg ccgtaatctt ttgcttcatt tacagaaagc cagaagttgc
     8701 ggtctgtatc tttggagatt ttttcgtatg attgaccggt tgcttcagcg attaggcgat
     8761 taattctttc gcgcatccgg ataatttctt ttgcttcgat ttcgatttct gtgctttgac
     8821 cttggacacc gccagcaggt tggtgaatca tatagcgcgt atttggaagg ctaaagcgat
     8881 tttctttttc ggcagctaag taaatggtaa tgccggcact tgcaacccaa ccagttccaa
     8941 cgacttttac tgtcggttta ataaatttaa tcatatcatg aatcgtgtca ccagcttcga
     9001 cgtgtccgcc ttggctatta ataaaaatcg taattggatc attgctaata gattcaagta
     9061 gtaaaagttg cttagaaacg tcctcggcta actcctgatt gatttccccg taaattaaca
     9121 ctgtgcgtgt atcaatcaat ttttgggtaa ggatgtttgt gatgttttca ttctttgtat
     9181 tctctgccat gaaaaaattc ctccttaaaa agccttagtt tatttgtaat acaggtatct
     9241 tatcataatg gtcgaaaatg gtcaaacatt ttgaatataa aaaagaaaac gctttaggac
     9301 ggcgttttct cttcttaatt ttatacgaat gcgagttgcc aagtaatgcc atatttatcc
     9361 gtaacccatg ccacttttcg aagcgcttct actgcttctg gccccatcat aactgtacct
     9421 tctttagcca gtttttcaaa aagagtgtca aattcatctt ccgtatctgc aaaataaagg
     9481 gttgtagtgg cccagctaaa gtcaggggag gcgttgttag tcatgtccat aatcatgaat
     9541 gatgcacctt ttatttcaaa agtagcattg agaaccttgc caatatcgcc gccttgctct
     9601 ggttttgtaa agtaagttag tccgattttt ttcgcatcgg ggaaagtgtc taaataaaaa
     9661 ttaaatgctt cctcgccatt gccgttaaac gtgaaaaatg tggagattcg ttttgcttga
     9721 ttaaacattt attttacctc cttttgaatt attttaacta tacccgaaaa atgtttcaat
     9781 tatgtgttaa aatgaagaaa aatgtgcggg ggcttgatga tgaaatatcc gataatgctt
     9841 gatattacag ggaaacgggt tgtcataatt ggcggtggga aggtggcgct tcgtaaagta
     9901 aaggggttgc ttcacaccgg agctgatatt ttaattgtcg ggttagacgt tttgccagag
     9961 attaaagagc ttcaagtgca ggtgaaagaa gaagcttacc gggcagaaca tctaattggt
    10021 gcttttctga tatttatttg tacgaataac ccagaagtaa atcaaatggt actgaaagat
    10081 cgcttgccag aacaactagt gaatgatacg actgaacaaa agaattccga ttttttcaat
    10141 atggcaactg tatcaaaaaa tgagttgcta gtcggtattt caacaggagg cgggaatcct
    10201 ggatacgcca agaaagtaaa acgggaagta cgccagttag tagaaaattt agaaacagaa
    10261 gaaatcggaa agcgtaataa aaatgataaa acctgctaat tttagtaggt tttttattct
    10321 attatattgc tctcttttag gttgcaaaat tttactatag attttggaat gtaaacgctc
    10381 tatcattgaa gtatactgaa aaactattaa gagggtgttg agccaaatgt ccattttaga
    10441 aaagattaaa gatgccggag ttgttggttg tggtggagcg ggctttccga cccatgccaa
    10501 atttagcggt gaagtggaat acttaattat taacgcagcg gaatgtgaac cgctcctaaa
    10561 aacagatcat tttgtcatga gaaaccatgc agtagaaacg attaaagcaa ttgaaatggt
    10621 taaaagccaa gtaggtgcag aatttgccgt tattgcaaca aaacggtatt acacagagga
    10681 aattgcggct ttacggtcag caattacaga actagatgca agtgtgacaa tacatgagat
    10741 ggataatgtc tatccaactg gtgacgagca agtcatggtc tttgaagtga ctggacgcgt
    10801 tgtgccacca agcggtattc cactaatggt tggctgtatt gtatcgaatg tctcgacaat
    10861 gtggaacgtc tttcatgcaa ttcaagatga cgcaccagtt gttcgtaaac agctgacagt
    10921 aactggagca gttggagagc cgaaactttt agatgtccca gttggaacgc catttgaagt
    10981 ctgtttagca gcagctggtg gaactaattt agacgagtat ttatttttag atggtggacc
    11041 aatgatgggg aaattaaatg acaagtctac cattgctgaa aaagtagtaa cgaaaacaac
    11101 ttcgggtttg attgtggcag aggatactgg ttatctgcac aagctacatt accaaacagt
    11161 ggaacaaatt tttaatgaaa caaaatcggc ttgtattcag tgttcacttt gttcggattt
    11221 atgtccaaga aaacaattag gtcacgatat tcatccgcat aaagttatgc gccatttcgc
    11281 ggttgcagaa gatataacgg atattaaacc agatccgatt tgggaagaag cgatgatttg
    11341 ctgtgaatgt ggcatttgtg aggtaattgc ttgtccgatg gggctctcac cgcgccaagt
    11401 aaatattcat gtgaaaaaag aacttttaaa acaaggcgtt cgttatcaaa ctgataaaaa
    11461 agaatttacg cctgatccga tgcgtgaata taaatcaatt gctcccaaaa atattctaat
    11521 caaaatgggc ttacaacaat atgcagacgt tcatttagaa acaatgcatt atctagatgt
    11581 agatgaagta tttatcccaa cgaaaatgca tattggcgcg ccgtctattc cagtagtaag
    11641 tgaaggggac atcgtgaaaa aaggtgattt aattgcgaaa attcctgatg cgtctcttgg
    11701 ggcaaatatc catgcaagta ttgacggtca aattattcgt ataaccgaag aacaagttca
    11761 tattaagaag gtgatgtcat gaaaatggat acattaggat ttctcgaatt aaatagtatt
    11821 tcgaaaggca tcgaggcggt tgacacaatg ctaaaagcgg ccaactccga attgatttat
    11881 gctaaagcaa gctgccctgg gaagtattat atattaattg cagggacagt agattctgta
    11941 gctcaatcaa ttgaagctgg aacgaagatt ggtgcggcaa atatcgtcgg gaatttagtc
    12001 attcctcgcg tgtccgacca agtaattaaa gcaattaaca aaacggaagt gccagatgag
    12061 atgaatgcag ttggtgttat ggagtattat tcctgttcag gatcaattat tgctgcagat
    12121 gccgcagtaa aagctgcaga tgttcagtta atggatattc ggttggcaac ggggattgct
    12181 ggtaaatctt tcgttgttct aactggtgat acagcagcat gtgaagcggc tgtggaagct
    12241 ggacttgcgg cagccaaaga agaagcactt ttaattaata aagtagttat accaagacct
    12301 cgtaaagaag tttttgagag tttaatctat taaaaagata acaatatatt gtcatagagt
    12361 ttttgagaaa ggtacgcact gactgtggtt gcgtgccttt tgaacaatct gacaaaatag
    12421 tggcgcttaa atatgatagg attattttga gatagtttgt ctagaagagg agtgaagaaa
    12481 atgagttttg atgataataa agagcgtgta atacaagaat atgtaccggg aaaacaggtg
    12541 acgctggcgc atttaatcgc caacccaaac cgtgatattt atacaaaatt aggattagaa
    12601 gaaggcgcaa gtgcgattgg aattttaacg attacgccaa gtgaggcttc cattattgcg
    12661 agtgacattg caactaaatc aggtgacgta cgaattggct ttattgatcg ttttagtggg
    12721 tccgttgtac ttacaggtga tgtttcttct gttgaatcag ctttacaaca agtcgtttat
    12781 tcattacatg agattttgga cttttctatt ccaaaaatca ctaggagctg agtcacttga
    12841 agaaaatgat ggtaatgggt tcagttggtt gtggtaaaac aacgctgtgc c
//
LOCUS       DASEAA010000073        12786 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.073, whole genome shotgun sequence.
ACCESSION   DASEAA010000073 DASEAA010000000
VERSION     DASEAA010000073.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12786
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.073"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..2257
                     /locus_tag="U0342_001671"
     CDS             <1..2257
                     /locus_tag="U0342_001671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2423016.1"
                     /translation="FQKGDYFNITLSSDALLYTEKAYDLKVDIDPTAVTNEQVVGKVT
                     VEKINGSPTLHFVFTEDSESFFINSFDASFKIQVMPAHGDKNVINLSYSGAAKNFKNI
                     GTSSVEWNVNMADDWPPVGISDFSKISGDLYHAILVYEKPSSKVNYETEILVSYPLFE
                     KRIPLGNVQNIKIEVWDEAKEIYRVGVAGVDYGTITYDVGTPFVGGPIFQMNCTIPFK
                     GISTKTRVSFDIDTNVDGKPGTTDPYLVSLSSLSSATKSLEFYPVNNAVTQMTATFFG
                     KVTTRFEDELGNPVTFDNYSTVTTPGKVNQDGKFEIAEPFLHNSVQNVDKHAYDTLLD
                     TNKYKLLEVTSPNKLSETADNLSIQIKRGYQNDVLYKIKALQKPVISALPEIEYSKTV
                     NRTMEEFLEDVEAKTDIPADIDCDLTNVKWGVPGDYLVLITAVNEDNQAADPVPVTIK
                     ISKNPAPVITVDPEIIYDKTVTKEESTLLNEVNARTNDGSTITSNINDKVKWGVPGDY
                     EVTLNAVNEDGVAAESKTFIVRILKSPAPIITVDPEITYPKTITKTEAELLQEVNAQT
                     NDGSPLVSDMNDKVKWGVPGDYEVTLNAINEDGVAAEAKTFIVRILKSSAPIITVDPE
                     ITYDSSVIKDERELLKDVHARSSDGSVLTSDSQVKVKWKKTGSYTVTLNAVNEDGISA
                     NSVQFTVHIVDAKAIPVVIEEKPESTPKPDTKEKVVIKKEKLPKTGDTNTKTILSGIF
                     CLGAWYLLRRK"
     gene            2456..3109
                     /locus_tag="U0342_001672"
     CDS             2456..3109
                     /locus_tag="U0342_001672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724402.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423017.1"
                     /translation="MDDWSTLIGELEHNTPEKVWIVREELNISEVFEIQKLEAHFILV
                     LEGVLRMENEHQQILHYFRENNVIYQSPYELRVQNKLRLVAETPAHIVLLHREFFLNY
                     ATNQPAYSEKLVRAIMDNAASFMFELMKNDLKSEDRLAYSLQQLCQSLELEVKNEFYL
                     LPHYINKNKLALYSDISRKSLYKYLQNLERKGQIKMNGNQILVRISRFTNSENVDWL"
     gene            3298..4914
                     /locus_tag="U0342_001673"
     CDS             3298..4914
                     /locus_tag="U0342_001673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423018.1"
                     /translation="MKLGKVGALLLGTALVFQAPFQVFATSVNGEEQVKKEAAAPKIS
                     VNKQTLAATSDLEQTVGEAITKTIHLQDQALPNNEWGSYISDVKVTLSNMDGISYDVK
                     YGPLSEDGTHYQYADITLSGAPTKAGTGSISLEYYDGAGNGGVYSYSVNTKSKTTIQY
                     VDGDGNKLAEDTVKTGDLNTAYTSEPKTIDGYEVDETKLPSNQNGQFAETNQTVTYIY
                     SKTKSEVNKGTVGISFYTPDGSRRELKSSLDLSYAYPDGVPTDTVTFGDLAKNTTYKD
                     LRNTPDAPTLLWNDLLHYMVDYMNGDIDAAQFEEAVGLTPANFDLDFISRNFEGYKFD
                     EAMYQENLSKLVTFEQDGDQVDLQVPFKKVEVGADITVKYVDTAGNELASVETLSGDV
                     DDNYTSEAKTIDGWTLKETPNNATGVFSKEAQTVTYVYEKNEDTDVTPAPDNSADTND
                     DSNSSDNTATTDDNSSSAVKEKAQTQASSPKAGKVTTQESTSNKVTAQSKESLPKTGD
                     NVLESSLLVGLGMLLLGGLFVFLRKTRKVK"
     gene            complement(5000..5308)
                     /locus_tag="U0342_001674"
     CDS             complement(5000..5308)
                     /locus_tag="U0342_001674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724404.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carboxymuconolactone decarboxylase family
                     protein"
                     /protein_id="HEM2423019.1"
                     /translation="MKVSKSFEAFAKEAPEVHSAWMETVHKLDAASKLDKKTEELAYI
                     AVMAATRLESGLPFHVKMAKTNGATRDEIISAVLVGLPAVGNTVISALPVALEAYDEV
                     "
     gene            complement(5371..6186)
                     /gene="pdxK"
                     /locus_tag="U0342_001675"
     CDS             complement(5371..6186)
                     /gene="pdxK"
                     /locus_tag="U0342_001675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxine/pyridoxal/pyridoxamine kinase"
                     /protein_id="HEM2423020.1"
                     /translation="MTIKKTLTIAGSDSSGGAGLQADLKTFEEYGTYGFSAITTIVTM
                     DPDNNWAHGVTPIDAQLVREQLKTILSGGPVDAMKTGMLGSIDIIKATREAIDKYDLK
                     NVVIDPVMVCKGEDELIQPENAEAIRDLLLPKATITTPNLFEAGQLSGLGKLTTLDDM
                     KKAAKKIIELGAKYVVIKGGKALESDKAIDLLYDGKEFTIYEVEKISPSHNHGAGCTF
                     AAAITAGLAKGLTVEEAVAKAKDFVTAAIKGGFALNEFIGPVWHGAYNKAENR"
     gene            complement(6211..7077)
                     /locus_tag="U0342_001676"
     CDS             complement(6211..7077)
                     /locus_tag="U0342_001676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464190.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2423021.1"
                     /translation="MIKVIASDMDGTLLNSDIEIAQENVEAIEKARAKGIHFVLCTGR
                     MYDDAMGLINKANLYAPAICMNGAEIRDEHGKIILQHPIDRNLARNTYNTLTELGMYT
                     EFFTDMGPITTDKARGKEFMIEMHKRIHPDVPAETIMDKVEERFESKDVHEIPDVERI
                     LGNKDLTILKFISFSSDKDILAKAKQKLEKDSELSVTSSFSDNIEITHREAQKGISLQ
                     YYVEKLGVTLDETFAIGDNMNDISMLKMAGYSVAMGNGEEEVKDLAEHVTLSNDEHGV
                     AAAIYKMLETND"
     gene            7251..7814
                     /locus_tag="U0342_001677"
     CDS             7251..7814
                     /locus_tag="U0342_001677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464191.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="maltose O-acetyltransferase"
                     /protein_id="HEM2423022.1"
                     /translation="MKTELEKMIAGEMYDPSDRELAHGRNRARKFCREINDAMDSESR
                     ASVLKRLFGGTKENVYVEPDFRVDYGSNIYVGENFYANFDCVILDVCEVHIGDNCMMA
                     PGVHIYTATHPLDPVERNSGLELGKPVEIGDNVWIGGRAIINPGVKLGNNVVVASGAV
                     VTKSFPDNVVLAGNPARVIKTIEVEEK"
     gene            7811..8074
                     /locus_tag="U0342_001678"
     CDS             7811..8074
                     /locus_tag="U0342_001678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5327 family protein"
                     /protein_id="HEM2423023.1"
                     /translation="MIIADSKIFEQMENELAKAKAATTKASQDKHLHGLMLLVQLAKT
                     GDETTAAVEPIAIQSAEPAQIASMDGKKIELEDGANGDSLLDF"
     gene            8084..8461
                     /locus_tag="U0342_001679"
     CDS             8084..8461
                     /locus_tag="U0342_001679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF423 domain-containing protein"
                     /protein_id="HEM2423024.1"
                     /translation="MKKTIITGAIFAGLAVLLGAFGAHALKDVLGSYASTWETGVQYQ
                     MFHAGGILVVGLLMEKQASRLYTWAAILFSVGIVFFSGSLYVLSISKVSILGAITPIG
                     GVCFVVGWFLLILGVSRRTMSRY"
     gene            8575..9510
                     /locus_tag="U0342_001680"
     CDS             8575..9510
                     /locus_tag="U0342_001680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464194.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423025.1"
                     /translation="MTYALEIKGLRKIYSTGVEALRGVDLTVEEGDFYALLGPNGAGK
                     STTIGIITSLVNKTSGQVSVFGYDLDTDIVRAKQQIGLVPQEFNFNPFETVQQIVVNQ
                     AGYYGVSRKEAIKRSEKYLKQSNLWEKRNERARMLSGGMKRRLMIARALMHEPKLLIL
                     DEPTAGVDIELRREMWTFLRELNESGTTIILTTHYLEEAEMLCRNIGIIQSGELIENT
                     SMKSLLSKLQFETFIFDLEPYEEAFEITGYNHVFEDKQTLSVEVERNQGVNHIFEQLS
                     EHGIKVLSMRNKSNRLEELFLKITEEKHQVGEKHV"
     gene            9503..10273
                     /locus_tag="U0342_001681"
     CDS             9503..10273
                     /locus_tag="U0342_001681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464195.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423026.1"
                     /translation="MFNLYFTALKSLAAKETNRYMRIWVQTLVPPVITTSLYFIIFGK
                     MIGSRIGEMNGFSYMEYIVPGLIMMSVITSSYANVSSSFFSQKFQKNIEEILVAPVPT
                     HIIIWGFLIGGIGRSVLVGALVTLISMVFVPIHIHSWTIGIITFLMTAILFSLAGLIN
                     GIFARSFDDVSIVPTFVLQPLTYLGGVFYAISMLPPIWQAISKVNPIVYMISGFRYGF
                     LGVTDVPVAISLSILVVFSAVLYSICWYLISKGRGLRS"
     gene            10533..11417
                     /locus_tag="U0342_001682"
     CDS             10533..11417
                     /locus_tag="U0342_001682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2423027.1"
                     /translation="MMNKENPLNKYHTGKFEKQRQDYPGLQSKMTPVPDTGESSYQGA
                     NKLTGKKAFVTGGDSGIGRAAVIAYAREGADVAINYHPDEEVDAQEVKAIVEEAGQKC
                     VLLPGDLRKEGLAKDLVKKAYNELGGLDILVLNAGLQQYQLDIQKLPAEQLRDTFEVN
                     VFSVVFAIQEALNYLKAGASIILTSSIQGVKPSAHLVDYAMTKSSLISLTKSLAAQLG
                     EKGIRINAVAPGPIWTALQISGGQPQDSIPAFGQDQPLGRAGQPAELASAYVLLASDE
                     ASYTTGQVYGITGGAPIN"
     gene            11435..11611
                     /locus_tag="U0342_001683"
     CDS             11435..11611
                     /locus_tag="U0342_001683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464197.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2188 domain-containing protein"
                     /protein_id="HEM2423028.1"
                     /translation="MPWTKNDYPDSWKNLRKTEREKAIEIGNALLKDGYSESRAIPIA
                     TSKAEEWYKNHKES"
     gene            11736..12344
                     /locus_tag="U0342_001684"
     CDS             11736..12344
                     /locus_tag="U0342_001684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464198.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423029.1"
                     /translation="MNKRRWIFSTVVAAFLLIIGGFLVYQQMTPKPFTEVVAEAKIDG
                     YESGDELENASTVIVTGQLEKRGDSIIERASDDAVIGVYRMSTFKIAQVLKNETDDNL
                     AKEMTISVYENEGYDAKANTTYHIAGYTKMEKEEKYLLLLQKDSEDDYYVPTAVIFGK
                     INLNPNKRNELFPKNSDTESAINKVQAEVLKNLENEIERENK"
BASE COUNT         4151 a         2140 c         2731 g         3764 t
ORIGIN      
        1 tttccaaaaa ggggactatt ttaatattac tttatcatct gatgccttac tctatacaga
       61 gaaagcctat gatttgaaag tggatattga cccaacagcg gtaactaatg aacaagtagt
      121 tggtaaagtt actgtagaaa aaattaatgg atcaccaaca ttgcactttg tttttacaga
      181 agattcagag tcttttttta taaacagctt tgatgcgagt tttaaaatac aggtgatgcc
      241 agcgcatggc gataaaaacg ttattaatct ttcctatagt ggcgctgcaa aaaactttaa
      301 aaacattggg acgagcagtg tggaatggaa cgtaaatatg gcagatgact ggccgccagt
      361 tggaattagc gatttttcta aaataagtgg cgatttatac catgcgattt tagtgtatga
      421 aaagccgagt agtaaagtga attacgaaac agaaattttg gtatcgtatc cgctttttga
      481 aaaacgaatt ccacttggaa atgtgcaaaa tattaaaatt gaagtttggg atgaagcgaa
      541 ggagatttat agagttggtg tagccggggt ggattacgga acgattacat acgatgttgg
      601 aactccattt gtaggcggtc ctattttcca aatgaattgt actattccgt tcaaagggat
      661 ttctactaaa actcgtgtta gttttgatat tgatacgaat gtggacggga aacctggaac
      721 aacagatccg tacttagtta gtctttcttc cttatcatca gctacaaagt cgctggaatt
      781 ctatccagtg aataatgctg ttacgcaaat gacagctacc ttttttggga aagtaacgac
      841 gcgctttgag gatgagttag gcaatccagt tacttttgat aattatagta ctgtaacaac
      901 accagggaaa gtcaatcaag atggtaaatt tgaaatagcg gaaccttttt tacacaattc
      961 cgtccaaaac gtggataaac acgcctatga tacccttttg gatactaata aatataaatt
     1021 attagaggta acttctccta ataaactatc tgaaacagcg gataatttaa gtattcaaat
     1081 aaagcgtggt tatcagaatg atgttttata caaaataaaa gctctccaaa aacctgtcat
     1141 tagcgcgctt cctgaaatcg aatatagtaa aacagtgaat aggaccatgg aagagttttt
     1201 ggaagatgtg gaagcaaaaa cagatattcc agctgatata gactgtgatt taacgaatgt
     1261 gaaatggggt gttccggggg attacctagt tcttataacc gcggtgaatg aggataatca
     1321 agcagcggat cctgttcctg taacgattaa aatttccaaa aatcccgcac cagtcataac
     1381 ggtagacccg gaaataatct acgataaaac agtgacgaaa gaggagagca cattactaaa
     1441 tgaagtaaat gcgcgaacaa atgacggttc gacgataact tctaacatta acgacaaagt
     1501 aaaatggggc gtgccaggcg attacgaggt tactttgaac gcggtaaatg aagacggcgt
     1561 ggcagcggaa tcgaaaacat ttatcgtccg cattttaaaa agcccagcac caataatcac
     1621 ggtagatcct gaaataacct atccgaaaac aataactaaa acggaagctg aactccttca
     1681 agaagtaaat gcgcaaacaa atgatggttc accgcttgtt tctgatatga atgacaaagt
     1741 aaaatggggc gtgccaggcg attatgaagt tacgttaaac gcgataaatg aagacggcgt
     1801 agcagcggaa gcgaaaacat ttatcgtccg cattttaaaa agttcagcac caataatcac
     1861 ggtagatcct gaaataacct atgattcttc tgtaattaaa gacgaaagag agctattaaa
     1921 agatgtccat gctcgttcaa gtgacggttc ggtattaact tctgatagtc aggtaaaagt
     1981 aaaatggaaa aaaacaggaa gctataccgt tactttaaat gcagtaaatg aagatggcat
     2041 ttctgctaat tctgtgcaat tcactgtgca tatagtagac gctaaagcaa taccagtagt
     2101 aattgaagaa aagcctgaat ccactccaaa accagatact aaagaaaaag tagttattaa
     2161 gaaagaaaaa ctaccaaaaa caggagatac gaatacaaaa actatattga gtgggatttt
     2221 ttgtttaggc gcttggtatt tgcttagaag aaaatagaca aaaaccgcaa gtgaagtcac
     2281 ttgcggtttt tttgccgatt gtagcttaaa actgctagag tagatataaa ttgccaattt
     2341 gaatcattcg cattctaggg cttattttta gaaacgattt tttcatggat aaaagggtat
     2401 agtaacaaaa taggaacgcg gttaggaaaa cataaacttg atggtggtga aacaaatgga
     2461 cgactggtca actttgatag gcgagctaga acataatacc ccagaaaaag tttggattgt
     2521 tagagaagaa ctaaacatat cggaagtatt tgaaatacaa aaattagagg cgcattttat
     2581 tttagtttta gaaggtgtct tgcgtatgga aaatgaacat caacaaattc tgcattattt
     2641 tagggagaat aacgtcatat atcaatctcc atatgaatta agagtacaaa ataaactaag
     2701 actagttgct gaaacacctg ctcacattgt tttactgcac cgtgagtttt tccttaatta
     2761 tgcaacaaac caacctgctt attctgaaaa attagtgcga gcaattatgg ataatgccgc
     2821 gagttttatg tttgagttaa tgaagaatga ccttaaatca gaggaccgat tggcttattc
     2881 attacaacag ctatgccaaa gtttagaatt agaagtgaaa aatgagtttt atctactgcc
     2941 tcattatatt aataagaata aattggcgct ttatagtgat atttcgagga aaagtttata
     3001 caaatacctt caaaatttag aaagaaaagg acaaatcaaa atgaatggta atcaaatact
     3061 tgtccgcatt tcgcgattca caaatagcga gaatgtagat tggttgtaga acaaaaaagc
     3121 cgtaattact ggcaaaatta ataattcgaa aaaacgacac atgattgata gtatggagtg
     3181 gattttacac atatttgtcc tcctcgcctt tgatatactt tacaaatcaa gtgagaccta
     3241 tacgataatt acatcattta gataacttga aattgtaaag ttgaaggggc aaaaaaaatg
     3301 aaattaggta aagtaggagc cttacttctc ggtacggctt tagttttcca ggcaccattc
     3361 caagttttcg caacgagtgt aaatggagaa gaacaggtga aaaaagaagc tgctgcgcca
     3421 aaaatatccg ttaacaagca aaccttagct gctaccagtg atttagaaca aacggtaggg
     3481 gaagcaatta ccaaaacgat acatcttcaa gatcaagcat taccaaacaa tgaatggggt
     3541 agctatattt ctgacgtgaa agtaacatta tccaatatgg acggaattag ttatgacgtg
     3601 aaatacggac cgctaagtga agacggtacg cactatcaat atgcagacat aacactttca
     3661 ggagcaccga caaaagctgg aacaggaagc attagccttg aatattacga cggggcaggt
     3721 aacggtggag tttacagtta ttctgtaaac acaaaatcta aaacaactat ccaatatgta
     3781 gatggtgatg gaaataaatt agcagaggat acagtgaaaa cgggtgattt aaatacagcc
     3841 tatacctctg aaccaaaaac gattgatgga tatgaagtag acgaaacaaa acttcctagc
     3901 aatcaaaatg gtcagtttgc tgaaacaaat cagacagtta cgtacatcta ctcaaaaacg
     3961 aaaagtgaag taaataaagg aacggtcggt atttcattct atactcctga tggtagccgc
     4021 cgggaactta agtcctcatt agacttaagt tatgcctacc cagatggtgt cccaacagac
     4081 acagtaacat tcggcgattt agcaaaaaat acgacttaca aagatttaag aaatacgcct
     4141 gatgcgccta ctcttttatg gaatgatttg ttacattaca tggtagacta catgaacggc
     4201 gatatagatg ccgctcaatt tgaagaggca gttgggctaa caccagcgaa ttttgattta
     4261 gattttattt cacgaaattt cgaaggatat aaatttgatg aagcaatgta tcaagaaaat
     4321 ctaagtaaat tagtcacttt tgagcaagat ggcgatcaag ttgatttgca agtaccattt
     4381 aagaaagtag aagttggagc ggatattact gtaaaatacg ttgacacagc aggaaacgaa
     4441 ttagcatctg tagaaacgtt gagtggtgat gtggatgata actatacttc agaagcaaaa
     4501 acaattgatg gttggacttt aaaggaaaca cctaataatg caacaggagt ctttagtaaa
     4561 gaggcacaaa cggttacgta tgtttatgaa aaaaatgagg atacagatgt cacaccggct
     4621 cctgacaatt cagcagatac aaatgatgac agtaactcat cagataatac tgcgacaaca
     4681 gatgataata gtagtagcgc agtgaaagaa aaggcgcaaa cacaagcaag tagtccaaag
     4741 gcaggaaaag taaccacaca agagagcact tctaacaaag taacagcaca atcaaaagaa
     4801 tcacttccta aaacgggaga taacgtgttg gaaagtagct tgttagtggg cttgggtatg
     4861 cttttgttag ggggattatt tgtattcctt cgtaaaacta gaaaagtaaa ataaaaaaac
     4921 gcccagtatt tgagcgattt cagactgtag acaaagtgag aaatcatttt atctacagtc
     4981 tgttttttga agttatttat taaacttcat catatgcttc taaggcaaca ggtagggcgc
     5041 ttataacagt atttcctaca gccggtagac caacgagaac ggcgctaata atctcatcac
     5101 gcgtcgcacc gtttgtcttt gccattttca catggaaagg gagcccgctt tctaagcgag
     5161 tggcagccat aacagcaatg tatgctagtt cttctgtttt tttatcgagt ttacttgcgg
     5221 catctagttt atgtacggtt tccatccagg cagagtgtac ttcgggagct tctttcgcga
     5281 acgcttcaaa tgatttgctt actttcattg aactcatctc ctaactttta ttataataaa
     5341 aaaccgccca aacagtggac ggttttcgta ttatctattt tctgctttat tataagcgcc
     5401 atgccaaaca ggaccgatga attcgtttag tgcaaatcca cctttgatag ctgcagtgac
     5461 aaagtctttt gcttttgcga ctgcttcttc aaccgttaaa ccttttgcaa gtccagctgt
     5521 gattgctgct gcgaaagtac agccagcgcc gtgattgtgg cttggagaga ttttttctac
     5581 ttcatagata gtaaattctt tgccatcata tagtaggtca attgctttgt cgctttctag
     5641 ggcttttccg cctttgataa ctacgtattt agcacctaat tcgatgattt ttttcgctgc
     5701 ttttttcata tcatctaatg tagttaattt gccaagaccg gataattgac ctgcttcgaa
     5761 taggtttggt gttgtgattg ttgcttttgg aagcagtagg tcgcggatag cttccgcgtt
     5821 ttctggttgg attaattcgt cttcgccttt acaaaccata acgggatcga ttacgacatt
     5881 ttttaaatca tatttgtcga tggcttcgcg tgtagcttta atgatgtcaa ttgaaccgag
     5941 catacctgtt ttcattgcgt caacaggacc accagaaagg attgttttaa gttgttcgcg
     6001 aacaagttgc gcatcaattg gagtaacgcc gtgcgcccag ttgttatctg gatccattgt
     6061 tacgattgtt gtgattgcgc taaaaccata agtgccgtat tcttcaaacg tttttaaatc
     6121 ggcttgtaaa ccagcaccgc cacttgaatc agaacctgca atagttaatg tttttttgat
     6181 tgtcatcgtg tttcctccta taaataaact ttagtcattt gtttctaaca ttttatagat
     6241 ggctgctgca acgccgtgct catcattcga aagggttacg tgttctgcaa gatctttgac
     6301 ttcttcttcg ccgttaccca tagctacact ataaccagcc atttttagca tcgaaatatc
     6361 attcatatta tctccaattg caaaagtttc atcaagtgtt acgcctaatt tttctacgta
     6421 atattgtaaa gaaatacctt tttgtgcttc gcggtgagtg atttcaatat tatcagagaa
     6481 agaagatgta acggatagtt cggaatcttt ttctagtttt tgtttggctt ttgcaagaat
     6541 gtctttatca gaagagaagg aaatgaattt tagaatggtt aaatctttat tgcctaaaat
     6601 acgttctaca tctggaattt cgtgaacgtc cttcgattca aaacgttctt ctactttgtc
     6661 cataatggtt tctgcgggaa cgtctgggtg gatgcgtttg tgcatttcaa tcataaattc
     6721 tttgccacga gctttgtctg ttgtgattgg gcccatgtca gtgaaaaatt cggtatacat
     6781 acctaattca gtcagcgtgt tgtaagtgtt tcttgctagg tttctatcga tcggatgttg
     6841 caaaattatt ttgccgtgtt catcgcggat ttccgcacca ttcatacaaa ttgctggtgc
     6901 atataaatta gctttattaa ttaaccccat tgcatcgtca tacatacgtc cggtgcaaag
     6961 aacgaaatga attcctttgg cgcgggcttt ttcgattgcc tcgacgtttt cttgtgcaat
     7021 ctcgatatca gagttaagta gtgtgccatc catgtctgaa gcaataactt taatcataat
     7081 attaaattcc tccccaattt tacctactcc actagaatat cattttttta agaaaaatgc
     7141 acaaaaggta gctgcgcgta gttttttagg tggagcgatt actttactat atttctgtga
     7201 ttcatttggt tataatgaat aagaataaaa cgtggatagg atgtgtcagg atgaaaacag
     7261 aactagaaaa gatgattgca ggagaaatgt atgatcctag cgacagagag ctcgcacacg
     7321 gaagaaatcg tgcacgtaag ttctgcagag agattaacga tgcgatggat tcagagtccc
     7381 gtgcaagcgt gctgaagcgc ctattcggcg gaacaaaaga gaatgtatat gtggaacctg
     7441 attttcgtgt tgattacggt tctaatatat atgtaggcga aaatttttat gctaattttg
     7501 attgtgttat tttagatgtt tgcgaagtac atattggtga taattgtatg atggcgcctg
     7561 gagttcatat ttatacggca acgcatccgc ttgatccagt agaacgtaat agtgggctag
     7621 agcttggtaa accagttgaa attggcgata atgtttggat tggtggtcgg gcaattatta
     7681 atccaggggt taagcttgga aataatgtcg tggttgcttc aggcgcagtt gtaacgaaaa
     7741 gcttccccga taatgtcgtt cttgccggca acccagcacg cgttattaaa acaattgagg
     7801 ttgaggaaaa atgattattg cagattcaaa gatttttgaa caaatggaaa acgaattagc
     7861 gaaagcaaaa gcagcaacca caaaagcgag tcaagataag catttgcatg gtttgatgct
     7921 gcttgttcag cttgcaaaaa caggcgatga gacaactgcg gctgtagaac cgattgctat
     7981 tcagtcagca gaaccggcgc aaattgcaag tatggacggg aagaaaatag agttagaaga
     8041 cggcgcgaat ggagactcgt tgcttgattt ttagggggta actatgaaaa aaacaattat
     8101 tacgggagcc atttttgcag ggctggcagt tttactaggg gcttttgggg cacatgcttt
     8161 aaaagacgta cttggaagtt atgcgagtac ttgggaaacc ggcgttcagt accaaatgtt
     8221 tcacgcagga ggcattttag ttgtagggct attgatggaa aaacaagcta gtcggcttta
     8281 cacatgggca gcgattttat tttcggtcgg aattgtcttt ttctcgggta gtttgtatgt
     8341 gttaagtatt tctaaagtat ccattttagg tgcgattacg cctatcggtg gtgtttgctt
     8401 tgtcgttggt tggttcttgc taattttagg agtatcaaga agaacgatga gtagatatta
     8461 aatcaaaata atcgtctttt cgcgttcatt tcagtgaaaa gacgattgtt ttttcttatt
     8521 ggcaaataag tgctaaaata aaggaatcat aatttataag gagacagcaa ttacatgact
     8581 tatgcacttg aaataaaagg gttaagaaaa atttattcca ctggggtcga agcgttgcgc
     8641 ggtgtggatt taacggtaga agaaggagat ttttatgcac tgcttggtcc taatggtgcc
     8701 gggaaatcaa cgacgattgg tattattact tcactagtca ataaaacatc tggtcaagta
     8761 agcgtatttg gctatgatct cgatacagat atagttcgag caaaacagca aatcggacta
     8821 gttccgcaag agtttaactt taatccgttc gaaacggttc agcaaatcgt tgttaaccaa
     8881 gctggctatt acggtgtttc tcgtaaggaa gctatcaaac gtagcgaaaa atatttaaaa
     8941 caatcgaatt tgtgggagaa acggaatgaa cgtgcgcgga tgctttcggg cgggatgaaa
     9001 cgccgcttga tgattgcgcg ggctctcatg catgaaccga agctgcttat tttagatgaa
     9061 ccgactgctg gtgtcgacat tgaacttaga cgtgagatgt ggacgttttt aagagagttg
     9121 aacgaaagcg gtacgacgat tattttgacg acgcattact tagaagaagc agagatgctt
     9181 tgtcgtaata tcggtattat tcaatctggg gagttaattg agaataccag catgaaatca
     9241 ctactttcta aattgcaatt tgaaacgttt atttttgatt tagaaccgta tgaagaagct
     9301 ttcgaaatta cgggttataa tcatgtgttt gaagataagc aaactttgtc tgtggaagtg
     9361 gaacgtaatc agggagttaa ccatatcttt gagcaattaa gcgaacacgg tattaaagtg
     9421 ctttcgatgc gtaataaatc gaatcgcctg gaagaactat tcttgaaaat tacagaagaa
     9481 aaacatcaag tgggggagaa acatgtttaa tctatatttt acagctttaa aaagtctagc
     9541 ggcgaaagaa acgaatcgct atatgcgaat ttgggtacaa acactcgtgc cgccagttat
     9601 cacgacttcg ctttatttta ttattttcgg gaaaatgatt ggtagccgca ttggggaaat
     9661 gaatggcttt tcttatatgg agtacattgt gccggggctg attatgatgt ccgtcattac
     9721 tagttcttac gccaatgtat cgtcttcctt tttctcgcaa aagtttcaga aaaacattga
     9781 agaaattctt gttgcgccgg tgccaacgca tattattatt tggggctttt tgattggtgg
     9841 gattggtaga agtgttttag ttggagcact tgtcacgctt atttcgatgg tgtttgtgcc
     9901 gattcacatt cattcgtgga cgattggtat tattaccttc ttaatgacgg cgattttatt
     9961 ttcactcgcg ggacttatta acgggatttt cgctagatca tttgacgatg tatccattgt
    10021 cccaactttt gtcttacaac cgttaacgta tctaggcggc gtattctacg cgatttcgat
    10081 gttaccgcca atctggcaag cgatttctaa agtgaacccg attgtctata tgatttccgg
    10141 attccgctac ggtttcctag gtgttacaga tgtaccagta gcaatttctc tatccattct
    10201 tgttgtattt agtgccgttc tttactcgat ttgttggtat ttaattagta aagggcgagg
    10261 acttcgaagt taatagcgat tttttcaaag agagagcgga tttccgttct ctttttttca
    10321 tgtttactac aattcttttt caatttgatg ttaaacgttt tagcgtaaaa ctggagggaa
    10381 gacattaagt aatgggggta gtgaaaatgg gaaataaaaa agtgaagcga aaacttggcg
    10441 ctaatatttg gtggatactt atattggcca ttttaataat tttcgtagcc tacttagtca
    10501 tgggttacgt tgcaaaaata taggaggttt ttatgatgaa taaagaaaat ccattaaaca
    10561 aataccatac aggaaaattt gaaaagcaac gccaggatta tcctggtttg caaagtaaaa
    10621 tgacgcctgt tccagatacg ggcgaatcaa gttatcaagg cgcgaataaa ttaaccggga
    10681 aaaaagcctt tgtaacagga ggcgactcgg gaataggtcg agctgcggta attgcctacg
    10741 ctcgagaagg tgctgatgtc gcgataaatt atcatccgga tgaagaagta gatgcacagg
    10801 aagttaaagc gattgttgag gaagctggac agaaatgtgt cttattacca ggtgatttaa
    10861 gaaaagaagg tttagcgaaa gatttagtaa aaaaagcata taacgagtta ggtggactag
    10921 atattctagt gctaaacgct ggactacagc aatatcaatt agatattcaa aaacttccag
    10981 ctgaacaatt acgtgacaca tttgaagtga acgtcttctc cgttgtgttc gcaattcaag
    11041 aagcacttaa ttacttaaaa gcaggagcaa gtatcatttt aacgtcctcc attcaaggcg
    11101 ttaaaccaag cgctcacctt gttgactatg caatgacaaa aagtagttta atttcgctta
    11161 ctaaaagttt agcggcacaa ctaggggaaa aaggtattcg aattaatgcg gttgcaccag
    11221 gaccaatttg gacggcgctg caaatttctg ggggacaacc acaagatagt attcctgcat
    11281 ttggtcaaga tcagccactt ggacgagcag ggcaacccgc agaacttgcg agcgcttatg
    11341 tgctactagc atcagatgaa gcaagttata caacgggcca agtatacgga attaccggcg
    11401 gagctcctat taattaaaag cgaggtgaaa gttcgtgccg tggacaaaaa atgattatcc
    11461 ggattcgtgg aaaaatctaa gaaagaccga acgcgaaaaa gctattgaaa tcggcaatgc
    11521 cctattaaaa gatggctact cagaaagccg cgctatccca attgccactt cgaaagcaga
    11581 agaatggtat aaaaatcata aggaatcgta atgtttagat gaaaaaatac ttggaacgct
    11641 aggctttaag tctattgttt caagtgtttt aattttgata aaaaaagtgt actatttaaa
    11701 ttaagagaga tgatgacaac taggaggaac tttttatgaa taaaagaaga tggattttca
    11761 gcactgtggt tgcagctttc ctattgatta ttggaggatt tttagtttat caacagatga
    11821 caccaaaacc attcaccgaa gtagtggcag aagctaaaat cgacggttat gagagtgggg
    11881 atgaattaga aaacgctagt actgtcatcg taacaggtca actagaaaaa cgcggagatt
    11941 caataataga gcgagcttca gatgatgctg tgataggtgt atatagaatg tctactttta
    12001 aaatagccca agttttaaaa aacgaaacgg atgacaactt agcaaaagaa atgacaatat
    12061 ctgtttatga aaatgaaggt tacgatgcca aagcgaatac gacataccat atcgctggct
    12121 atacaaaaat ggaaaaagaa gaaaaatatc tgttgttgtt gcaaaaagat tcagaagatg
    12181 actattatgt cccgacagcg gttattttcg gaaaaataaa cctcaatccg aataaacgaa
    12241 atgaattatt tcctaaaaat agcgacacag aatcagcaat caataaagta caagccgaag
    12301 ttttaaaaaa tcttgaaaat gaaattgagc gagagaataa ataattgtac tctgttgcat
    12361 tttagttaaa ttcgtcatct aattttaata caaaaaaagg gtttggattg ggggagacgg
    12421 gtattatata accataagca atgacaatgc cattactttt tctccctttt ttgtagtggg
    12481 ttgtctttac ttaccttaaa ctccctttta tacttttagc ggttgttagc agccactaag
    12541 agtatttttt tgtaaaaaac actaaataaa tgaaaactcc tcgaacaagg gaaagttcga
    12601 ggagttcggc atttaccaat atttataaat gccactgggg attttctaag tgaacaaaga
    12661 tatggatgtt tgggagagca tccacttgga gaatttacca tagatagata gcgacaagtt
    12721 gtaatgtagt ataaatcata caattcttgt agtgcatcat atatagcact gaattattaa
    12781 attcct
//
LOCUS       DASEAA010000074        12713 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.074, whole genome shotgun sequence.
ACCESSION   DASEAA010000074 DASEAA010000000
VERSION     DASEAA010000074.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12713
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.074"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..4640)
                     /locus_tag="U0342_001685"
     CDS             complement(<1..4640)
                     /locus_tag="U0342_001685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial Ig-like domain-containing protein"
                     /protein_id="HEM2423030.1"
                     /translation="MIKSLYIRRSLMMLITSLLVVSQLNLTVFQAFAEEKGEEPLSYE
                     VQEELSKDKKKAKLKIKATSNNNQVEILSIETPDGNKIEGKEAEYTAEKNGDVNFIIS
                     YKENIEGKETEIKTFKASYEVKNLIIEKEEANQSKDSVKQNETKAPLKNNQLKSGNDA
                     TVTLNIPAYDGTAWANGDIKDVNVTVDFSNSTSTSKEVEFTLPDGMRFVSIPVPSSFQ
                     VSTGVDSGVINRLSAGDPIGTAITSVTIPNKETTYDKATFGTVNYKLTPGTEKVSFNF
                     SVRVDANKYYGATDLKAPIKVEAFVGDNKMAIASEEKAIRAEGNKVVGYANQTHVSTM
                     FRNWYKSFRTPDVLASTDDEDSYAYTKSYSVVNGMNQVDERGTNIFSPKNVSTTLYYP
                     EGMEYVGVVNEKYALLNENANTTITHYPEENKVVFDFKQQNFKGVTDTVYAIKYKIPK
                     GTPAGTYTAPKVPHAVITTYDDKVFESDALTNNSTDLTTKATLDACRVVDSTENKMAL
                     IVGNKNINPDNETWAGNVRINNKDTAGTKTNQVFQIEFDSNWEASIVNIPFDGNRKDN
                     DITNIQYKTNFDDTYQTYNGNLPKNSMKNIAILEADAVGLQPGEYFTEVKANVGDFST
                     GYTSYSESGGFGEESTNSYGIVKPGISSVQFKVSIWDEADEVNTKVSGTSVYSVADNI
                     TTAANGTANFYNEQGQVIKTAGAGDKFTTKATLVLFNYPYGTRTVLNDPEVYLRQLDG
                     TKILPSSIKLTDQDGEEIEFSIKIETAKNGEKVYVLKTKDATVGRYVGYPSKHKFLNL
                     SYDTTIDVTLDKSLHTDIQQLLAWGGPNVKAATAANTFMDTGLDVNQNGIENERLLSA
                     NSSTLSVPKQDAVTVETFLNLAGEGAKASYVEGDDSTVSYFTPGTEADYTVRVTNTST
                     GIASAFELYIPIPKTGQNFGSKFQTETFKWDMKLNDAVQLTDEQKAQFDISYATEANK
                     NNYESESVYSAVPSDYGKVNMVRIKVKTKIDPGETQTIKVPLKVDETFNSATEGNKIS
                     ERDVYNPYYRVTTNAYSGTLPGTKVGAELIILEASGFLFQDKDANGLYEKAQGDTALA
                     NETVELYKWNENTSNYEPFLKNGEPVSVKTNADGKYTFNYNLNLSYGKYAVKFPERAG
                     NQFTLKQVGQDNTINSTVSNKGTDKGWVKEIDPAQPVSQNINAGYMEYAPDNDLKVNL
                     SAKIVQAGKSLKVTLPKVRATSGEAVEDTIEPSFFHNIQAITDGYKWTSNDTTLATTQ
                     TANDGSGIIVGISAGNKAIATTDIGITIKDIFDTEKKSTAPVYITEPSATIDQKEGLI
                     LGAMNFSLEYKDSNKLTETEAITLAKTASFEEVKTGVLSTAQDCTSSVKVDAKQLKAI
                     QEGSNQGGTYPLTYQVAKNGKTAEVVIQVKVEKDLTTVNVHDSILYLGDTWTATDNFD
                     SALNKVGETVPFGDIQVEGSVDTNTAGIYSVTYTYKGVSKKAKIEVKENLTEINAHDS
                     TIYTGDTWRAGDNFDSGLDKDGNALSLKDLTVIGTVNTNLAGVYTITYKYEDT"
     gene            complement(4906..5517)
                     /locus_tag="U0342_001686"
     CDS             complement(4906..5517)
                     /locus_tag="U0342_001686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ECF transporter S component"
                     /protein_id="HEM2423031.1"
                     /translation="MKNYSMKVFVSVAVLGTLAFILMMLQFPLLPSAPFLKLDFSDIP
                     ALIGGLLFGPLAVILVELIKNVLLYIVSGSPVGVPIGEISNFINGIVYVLPIYYLFHW
                     FRSTKGMVFSTAIGTLVMTVVMSIFNYFILLPFYIKLGGLPADTDVAWLVTYAIIPFS
                     LLKGVIVSAVFLLLYSRLKKWIAKNQTVKERRKFEKKQQEVSH"
     regulatory      complement(5707..5829)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00050"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="FMN riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="flavin mononucleotide"
                     /db_xref="RFAM:RF00050"
     gene            complement(5959..6477)
                     /locus_tag="U0342_001687"
     CDS             complement(5959..6477)
                     /locus_tag="U0342_001687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyl-CoA thioesterase"
                     /protein_id="HEM2423032.1"
                     /translation="MEKRQTKFCKESLVIKTSRVFPSDTNNHNTLFGGRLMTYIDDTA
                     SISASRHCRTEIVTASTDSVDFLKPIKNDHSVCLESYVASTGRSSMEIFVKIIAENLK
                     TGERYLAATSFLTFVALDADGKTVEVPLVKPETEEQKRIHAGAEARSIARKIRLKENQ
                     SLAESLSTDIPW"
     gene            complement(6493..8283)
                     /locus_tag="U0342_001688"
     CDS             complement(6493..8283)
                     /locus_tag="U0342_001688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEM2423033.1"
                     /translation="MKIWNSIVGKIWSTIILLLIGILVISGFLVAMIYEKNNITQITN
                     ELEDKTASIITVMQENNEVISAENNNDSALILLDDTMGVIIEQNGKSVYQSQSPDTIS
                     SASANKLIQDKTLDKALEKDNSVTMKYNFKTEKSSLPVEISAQKFKLANGETGVVYVY
                     QSYHDILKVNEKTMSTLIISGIIAIVITSILSFVFSSRMAFPLREMKKIAIAVSKGNF
                     DNRVPTYTHDEIGELGVAFNDMAKQLKYNVSALRQEKEQLSNILVGMADGVIKFSVDK
                     TIILSNPPAEEFLHNWFFSPENTEKVLIPVALNELLNDTLEKKESQVGEITFADHTYV
                     AILTLLYTGEHVRSVVAVIRDMTEEKQLEKMKSDFVNNVSHELRTPISMLQGYSEAII
                     DGVAQSDEEVREFAQIIYDESLRIGRLVNDMLDLARMEAGFNQMDNQKLPLAPLLRKV
                     ISNFDVLAKENYVELGLELETPDLEYSYDPDRMEQVLINLIMNAIRHTGKEGYDGKVI
                     LKQTIDEARSNLVITVSDNGSGIAEEDIPYLFERFYKVDKARKRGKAVGTGIGLAIVK
                     NIVEAHNGKISVESELGKGSDFIITLPLYK"
     gene            complement(8384..9100)
                     /locus_tag="U0342_001689"
     CDS             complement(8384..9100)
                     /locus_tag="U0342_001689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2423034.1"
                     /translation="MSEQVRVLVVDDEDRIRRLLKMYLERENYRIEEASDGDQALSMA
                     LNNNYEVILLDLMMPGKDGIEVCRELREFKSTPVVMLTAKGEEANRVQGFEVGADDYI
                     VKPFSPREVVLRVKAVLRRAKQSSEESAGGTPGDIITFPHLKIDNEAHRVIVDGKEIG
                     LTPKEYDLLYYLARSPDKVFDRESLLKEVWRYEFFGDLRTIDTHVKRLREKLHDVSED
                     AARMIVTVWGLGYKFEVPED"
     gene            complement(9283..10017)
                     /locus_tag="U0342_001690"
     CDS             complement(9283..10017)
                     /locus_tag="U0342_001690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rRNA pseudouridine synthase"
                     /protein_id="HEM2423035.1"
                     /translation="MERLQKVIANAGITSRRKAEKLIQEGKVTVNGKVVTELGVKVSG
                     TERIEVEGIQLTKEEHRYFLFYKPRGTVSAVTDDKGRTTVADYFADIPERLYPVGRLD
                     YDTSGLLLMTNDGDFANLLMHPKNEVSKTYIARIKGIPEREVIRQLERGVVIDGRKTA
                     PAKVKVRSSDKTKDKAIVEITIHEGRNRQVRKMFEAVGFEVQKLSREEYSFLNLRGLN
                     AGERRELSHHEVKQLKTEARFGKNKK"
     gene            complement(10020..10616)
                     /gene="scpB"
                     /locus_tag="U0342_001691"
     CDS             complement(10020..10616)
                     /gene="scpB"
                     /locus_tag="U0342_001691"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465474.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC-Scp complex subunit ScpB"
                     /protein_id="HEM2423036.1"
                     /translation="MNREEQLGVLESLLFAAGDAGLSTEQLTEVMEITHIEALNLLEL
                     LSDRYNGSADRGLILLELAGTFQLATKKAHAEFLRKLVEVPSNTVLSQASLETLAIIA
                     YRQPVTRMEVDEVRGVQTDGPIRTLVAKGLVTDKGRVDGAGRAKLYVTTSEFLDAFGL
                     NSLEDLPKLADPATDEPDQNEMDLFFDRFNQSKEQEEE"
     gene            complement(10613..11362)
                     /locus_tag="U0342_001692"
     CDS             complement(10613..11362)
                     /locus_tag="U0342_001692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="segregation/condensation protein A"
                     /protein_id="HEM2423037.1"
                     /translation="MVEMNFKVDAFEGPLDLLLHLIGQLEVDIYDIPMAEITDQYMEF
                     VHTMQEMELDVASEYLVMAATLLAIKSKMLLPKQELEIDYDTLEEEEDPRDALVEKLM
                     EYKRFKEAAKELKEKEAERSFYFSKPPMDLAEYDDGTKVAELDVSLNDMLSAFNKMLR
                     RKKLNKPLHTRITTQEISIDQRMDSVLEKLNLQVNHRLRFDELFEEQTKEQLVVTFLA
                     LLELMKRKLVEVEQAESFADLYVQGKGEEIS"
     gene            complement(11378..12688)
                     /gene="lysA"
                     /locus_tag="U0342_001693"
     CDS             complement(11378..12688)
                     /gene="lysA"
                     /locus_tag="U0342_001693"
                     /EC_number="4.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diaminopimelate decarboxylase"
                     /protein_id="HEM2423038.1"
                     /translation="MTFERLGTMNVNAEGHLEIGGVDTLKLTEKYGTPLYVYDVALIR
                     DRARGFKKTFEELGVKAQVAYASKAFSAVAIYQLMAEEGLSLDVVSGGELYTAIKANF
                     PPERIHFHGNNKSAEEIHMALDYGIGCFVIDNYYEISLLEDILIERNEKASVLIRVTP
                     GIEAHTHDYILTGQDDSKFGFGLTNGQAEKAIKQVLHASASFDLIGLHCHIGSQIFET
                     TGFKLAARRIMDKLVEWHQTLGFDSKVLNLGGGFGVRYTAEDEPLEPSEYVRQIMDEV
                     RDVANNNDIDIPEIWIEPGRSLVGEAGTTLYKVGSRKEVPGIRNYIAVDGGMSDNIRP
                     ALYDAHYDAVLAANPEKVAEETVAIAGKCCESGDMLIWDLPLPKSNAGEVLAVFCTGA
                     YGYAMASNYNRIPRPSVVFVENGVDKLIVARETYENLVQNDLSL"
BASE COUNT         3663 a         2681 c         1961 g         4408 t
ORIGIN      
        1 gtatcttcat acttatacgt aatcgtatat acgcctgcta ggtttgtgtt tactgttcca
       61 ataaccgtca aatcttttag actcaaggca ttgccatctt tatcaagtcc actgtcaaaa
      121 ttatcacctg ctcgccaagt gtcgccagta taaattgtcg agtcgtgtgc attaatttct
      181 gtcaaatttt ctttaacttc aattttagct tttttagaca ctcctttgta cgtatatgtg
      241 actgaataga ttcctgctgt attagtatca acagatcctt ctacttggat gtctccaaat
      301 ggaactgttt cacctacttt gtttagcgca ctatcaaagt tatcagttgc cgtccatgta
      361 tcacccaaat acaaaataga atcatgtaca ttgacagttg ttaaatcttt ttcaactttc
      421 acttgaataa ctacttccgc tgttttccca tttttagcaa cttgataggt caacgggtaa
      481 gttccgcctt ggttagagcc ttcttggata gcttttaatt gcttggcatc cacttttacg
      541 gaactagtac aatcttgtgc agtagaaagt acacctgtct tcacttcttc aaaactagct
      601 gtttttgcta aagtaattgc ttccgtttca gttagcttat ttgaatcttt gtattctaaa
      661 ctaaaattca ttgcgccaag gataagtccc tctttttggt ctatcgtagc acttggctca
      721 gttatatata caggtgcagt agattttttc tctgtatcaa aaatatcttt gattgtaata
      781 ccaatatcag ttgttgcgat tgctttgttt ccggcagaaa taccaacaat tattccagaa
      841 ccatcattag cagtttgtgt agttgctaaa gtcgtatcat tgctagtcca tttgtaacca
      901 tctgtaatcg cttgaatatt gtgaaagaac gacggctcaa tcgtatcttc taccgcttct
      961 ccactagttg ctcttacttt cggcaatgtt acttttaaac ttttaccagc ttgtacgatt
     1021 ttggcgctaa gattaacttt aagatcatta tccggcgcgt attccatgta accagcatta
     1081 atgttttgtg ataccggttg agctggatca atttctttta cccaaccttt gtctgtaccc
     1141 ttattggata cagtactatt tatcgtatta tcttgcccca cttgtttcaa agtaaactga
     1201 tttccagctc tttctggaaa cttcactgca tatttcccgt aagataaatt caaattgtaa
     1261 ttaaaggtgt attttccatc agcattagtt ttaacgctga ctggctcacc atttttcaag
     1321 aacggctcat agttagaggt attttcattc catttataaa gttcaacagt ttcgtttgcg
     1381 agtgctgtat ctccttgagc tttttcatac aaaccatttg catctttatc ttggaaaaga
     1441 aaaccgcttg cttctaaaat aattaattct gctccaactt tagttcctgg taatgttcca
     1501 gaataagcat tcgtagttac acgatagtaa gggttatata catcgcgttc acttatttta
     1561 tttccctctg tagcagaatt aaaagtttca tctactttta gtggaacttt gattgtttgt
     1621 gtttcaccgg gatcaatctt tgtcttcact ttgatacgaa ccatgttgac tttcccataa
     1681 tcagagggaa cagcgctata gacactttct gattcatagt tatttttatt tgcttctgtt
     1741 gcataactaa tatcaaattg tgctttttgt tcatctgtta attgcacagc atcatttagt
     1801 ttcatatccc acttaaatgt ctccgtttgg aatttagaac caaaattttg tccggtcttt
     1861 ggaattggaa tatagagttc aaaagcactt gctataccag tagatgtatt tgtaacacgg
     1921 actgtataat ccgcttccgt tcctggtgta aaataggaaa ctgtactatc gtcaccttct
     1981 acataagatg cttttgctcc ttctccagcc aaatttaaga atgtttctac tgtgactgca
     2041 tcttgctttg gaacacttaa agtactgcta ttcgcagaaa gcagacgttc attttctatt
     2101 ccattttgat tgacatcaag acctgtatcc atgaaagtat tcgcagctgt agcagccttt
     2161 acatttgggc ctccccaagc aagaagttgt tggatgtcag tatgaagact tttatctaat
     2221 gttacatcaa tcgtagtatc ataacttaaa tttaaaaatt tatgtttaga aggataacca
     2281 acatacctac caactgttgc atcttttgtt tttaaaacat acactttctc tccattcttg
     2341 gcggtttcta ttttaataga gaactcgatc tcttctccat cttgatccgt taacttaata
     2401 gaagacggaa gaattttagt accatccaat tgacgaagat acacttcagg atcattaagg
     2461 actgtacgtg tcccgtatgg atagttaaat aataccaatg tagcttttgt agtaaattta
     2521 tctccagctc cagcagtttt gattacttgt ccttgttcat tataaaaatt agctgttccg
     2581 ttcgccgctg tcgtaatatt atcggcaaca ctataaacag aagtacccga gactttcgta
     2641 tttacttcat ctgcctcatc ccaaatggat actttaaatt gaacagaaga aatgcctggt
     2701 ttgacaatac cataggagtt tgttgattcc tcaccaaaac caccagattc tgagtagctt
     2761 gtatatcctg tagaaaaatc gcctacattc gctttcacct cagtaaagta ttctcctggt
     2821 tgaagtccga ctgcatcagc ttctaagata gcaatatttt tcatactatt cttaggaaga
     2881 ttcccattgt atgtttgata agtatcatca aaattagttt tgtattgaat attagtgata
     2941 tcattatctt ttctattccc atcaaatggg atgttaacaa ttgaagcttc ccagtttgaa
     3001 tcaaattcaa tttggaagac ttgattagtt tttgtcccgg cagtatcttt attattaatt
     3061 cgaacattcc ctgcccaagt ttcattatct ggattaatat ttttgtttcc cacgattagt
     3121 gccattttat tttcggtcga atctacaact cggcaagcat ctaacgttgc cttagttgtt
     3181 aaatctgtag aattgtttgt taatgcatca gattcaaata ctttatcgtc atatgtcgtg
     3241 atgactgcat gtggcacttt aggagcggta tatgttcctg ctggcgttcc ttttggtatt
     3301 ttatatttta tcgcatatac cgtatctgtt actcctttaa agttctgttg tttaaaatcg
     3361 aacaccactt tattctcttc cggataatga gtaatcgtag tattagcatt ctcatttaaa
     3421 agtgcatatt tttcatttac taccccgaca tattccatac cttctggata ataaagggta
     3481 gtcgagacat tcttaggtga aaagatatta gttcctcttt catctacttg attcattcca
     3541 tttacaacag agtaactttt tgtatatgca taagaatctt catcatctgt actcgctaat
     3601 acatcaggtg ttctaaaaga tttataccaa tttctgaaca tagtacttac atgtgtttga
     3661 ttagcataac caaccacttt atttccttct gcacgaattg ctttttcttc tgaagcaatc
     3721 gccattttat tatctcccac aaaagcttct actttaatag gggcttttag atcagttgca
     3781 ccatagtatt tattagcatc tacacgaaca gaaaagttaa aacttacttt ttctgttcct
     3841 ggagtaagtt tataattaac tgtcccgaaa gtagctttat cgtaggttgt ttctttgttt
     3901 ggaatagtaa cggatgttat tgcagtacca atcgggtccc ccgcacttaa acgatttatc
     3961 accccagagt ccacacctgt tgatacttga aaactgctgg gaacgggaat tgatacaaat
     4021 ctcataccgt ctggcagtgt gaattccacc tctttactag tagatgtact attactaaag
     4081 tctactgtaa cattaacatc tttgatatcg ccatttgccc aagcagtacc atcataagca
     4141 ggaatattta atgtgacagt agcatcatta cctgatttta gttgattatt ctttagaggt
     4201 gcttttgttt cattttgttt aactgaatct tttgattggt tagcttcttc tttttcaatt
     4261 attaaatttt ttacttcata ggaagcttta aatgttttaa tctctgtttc ttttccttct
     4321 atgttttctt tatagctaat aataaaatta acatcaccat ttttttcagc cgtgtactcg
     4381 gcttcttttc cctcaatttt attaccgtct ggtgtttcaa tacttagaat ttcaacttga
     4441 ttattattag atgttgcttt aattttaagc tttgctttct ttttatcttt tgaaagctct
     4501 tcttgaactt cataagaaag tggttcttcg cctttttctt ctgcaaatgc ttgaaaaacc
     4561 gttaaattta gttgacttac tactagtaaa cttgttatta gcatcatcaa ggaacgacgt
     4621 atgtacaacg attttatcat attagttttc ctccttctca tattctggtt gtttttatta
     4681 acaaatctcc aagagataat ttaatattat cagacgattt tatcgagtgt acatagtcgc
     4741 aaaacacctt attaaaaaaa acagcactat tcgcaaattc atacaaatat ttgtcacatc
     4801 aaaagcacgt ttcagacaca tttaagacac aattaattcg caaaagctgc cattttagaa
     4861 gaaaaataaa aaaccactct ttattataga gtggttttgg ataaattaat ggctaacttc
     4921 ttgttgcttt ttttcaaatt tgcgccgttc ttttacagtt tggtttttag caatccattt
     4981 ttttagtcta gagtatagta acaagaatac agcactaaca atgactcctt ttaataaact
     5041 gaatggtata atcgcatatg tgactaacca agcaacatct gtatccgccg gaagtccacc
     5101 aagtttaatg taaaatggta ataaaatgaa ataattaaat atcgacatga cgactgtcat
     5161 tactaacgtt ccaattgctg ttgaaaacac cattcctttt gttgaacgaa accagtgaaa
     5221 taaataataa atcggtaata cataaacaat accattaata aaattggata tttctccaat
     5281 cggaactcca actggactac ctgacacaat ataaagtagc acatttttga ttagttctac
     5341 taaaatcact gcgagtggtc cgaataataa gccaccaatc aaagctggaa tatcactaaa
     5401 gtcaagcttt aaaaatggtg cactcggtag tagcggaaat tgtagcatca ttaaaataaa
     5461 tgctaaagta ccaagaaccg ccacacttac aaaaaccttc attgaataat tcttcattgt
     5521 catttctccc ttgatgttca ccaagaagcg agtgacatca ctagacgaat gcaacccaag
     5581 caaataaaaa acctcaactg aaaagagttg agggagagtt tgtgaatgaa taaacaagaa
     5641 ccggatactc aaataagcat cacagcttgc taacacatgc tcgtgaagac aaacgaaaag
     5701 gtctgccaac atcttctccc atccagacta tactgtcggt cctggaatta caccagagtc
     5761 aactgctaaa aaagcagatc gtggacttta accaccggtc gggaattgca ccctgccccg
     5821 aagatgaacg aatattttat tacaattttc attttaccat gaaaaaaatt tttggcaagc
     5881 acttttgtat attttttcac gtaagcgctt tctatctaaa ttaaataaaa actagctgct
     5941 tagctagttt ttattaattc accatggaat atctgttgat aatgattccg ctaatgattg
     6001 gttttctttt aaacgaattt tacgagcaat gcttcttgcc tcagcacccg cgtggattct
     6061 tttttgttct tctgtttctg gtttaacgag tggcacttct acagttttac catctgcatc
     6121 caacgctaca aatgttaaaa aggatgtcgc cgctaagtaa cgttctcctg ttttcaaatt
     6181 ctccgcaata attttaacga agatttccat tgaacttctg cccgttgaag ctacataaga
     6241 ctctaagcaa acagagtgat catttttaat cggttttaag aaatccactg agtctgtcga
     6301 tgcagtgaca atttccgtac gacaatgacg agaggcgctg atagaagccg tatcatcaat
     6361 ataagtcatc aatctaccgc caaaaagggt attatgatta ttcgtgtccg acgggaaaac
     6421 ccggcttgtt ttaattacta gtgattcttt gcaaaatttt gtttgtcttt tttccatgtt
     6481 tttcgctcca atctatttat agagaggcaa agtgataata aaatcagatc ctttacctaa
     6541 ttcgctttca accgaaattt tcccattatg tgcttctaca atattcttaa cgattgcaag
     6601 accaatacct gttccaactg cttttccgcg tttccttgct ttatccactt tataaaaacg
     6661 ctcaaacaga tatgggatgt cttcttccgc aatcccacta ccgttgtcag atactgtgat
     6721 tacaagattg cttctagctt catcaatggt ttgttttaaa attacttttc catcatagcc
     6781 ttcttttcca gtatgacgaa tagcgttcat aattaaatta attaatactt gctccatccg
     6841 gtcggggtca taggaatact ctaaatcggg agtttcaagc tctaagccga gttccacata
     6901 attctctttc gcaagaacgt caaaattaga aataactttt cgcagcaatg gagcgagcgg
     6961 taatttttga ttatccattt gattaaaacc agcttccatt ctagcaaggt ctagcatatc
     7021 attaaccaaa cgcccaatac gaagggattc atcgtaaata atttgtgcaa actcccgcac
     7081 ttcttcatcc gactgagcaa ccccgtcaat aatcgcttca ctataacctt gtaacatcga
     7141 aatcggcgtt ctaagttcat gcgaaacatt attaacaaaa tcgcttttca ttttttcaag
     7201 ttgtttctct tcggtcatat cgcgaataac cgcaacgaca ctacgcacat gttcccctgt
     7261 atacaaaagt gttaaaatgg caacatacgt atggtcagca aacgtaattt ctccgacttg
     7321 agattctttc ttttctaacg tatcattcaa taattcattt aaagccactg gaatgagcac
     7381 tttttcggta ttttcaggtg agaagaacca attatgtaaa aattcttctg ccggcggatt
     7441 actaagaatg atcgttttat ccacactaaa tttaataaca ccatcagcca tcccaactaa
     7501 aatattggat agctgttcct tttcttgcct aagggcgcta acattatact tcaattgctt
     7561 tgccatatcg ttaaaagcta ctccgagttc accaatttca tcatgcgtat aagttggtac
     7621 gcgattatca aagttccctt ttgaaacagc aatcgcaatt tttttcattt cacgaagcgg
     7681 aaaagccatg cgagaagaaa agacgaaaga caagatagac gtaataacta tcgcaataat
     7741 acccgaaata atcaaagtac tcatcgtttt ttcgttcact tttagaatat catggtaaga
     7801 ctgataaacg taaacaacac cagtttcacc gttcgctagt ttgaatttct gtgcagaaat
     7861 ttcaaccggt aaggagcttt tttctgtttt aaaattatat ttcatcgtta cactattatc
     7921 tttttctaaa gctttatcta atgtcttatc ttgaattaat ttattagcag atgcactaga
     7981 aatggtatct ggtgactgtg attgatagac gctttttcca ttttgttcga taatgacgcc
     8041 catcgtatca tcaagtagta tcagtgcaga atcattatta ttttcagcag agattacttc
     8101 attattttct tgcattacag tgatgatact agctgttttg tcttctaatt catttgttat
     8161 ttgagtaatg ttattttttt cataaatcat tgcaactaaa aatccagaaa taactaaaat
     8221 ccctatcagt aagagaataa tggtactcca aattttccca acaatactat tccaaatctt
     8281 catctattct cacctcggtc ctcgcaaaaa aataacgaac aaagcacgtg cggcataaca
     8341 cttgccgatt aaacgtcttt gcccgttatc ttagtctggt ttattaatct tctggaactt
     8401 caaatttata tccaagaccc caaactgtta caatcattct agcagcgtct tctgatacat
     8461 catgcaattt ttcgcgaagt cttttaacgt gtgtatcaat tgttcgcaaa tcgccaaaga
     8521 attcataacg ccatacttct tttaaaagag actcgcggtc gaatacttta tccggagatc
     8581 tcgctaaata ataaagcaag tcatattctt tcggtgtcaa accgatttct tttccgtcga
     8641 caataacacg gtgagcttcg ttatcaattt tcaaatgtgg gaaggtaata atgtctcccg
     8701 gtgttcctcc tgctgattct tctgaggatt gtttggcgcg acgaagaaca gctttcacgc
     8761 gaagcacaac ttctcttggg ctaaatggtt ttacgatgta atcatctgca ccaacttcaa
     8821 agccttgtac tcggttagct tcctctcctt ttgcagtcaa catgacaaca ggtgtggatt
     8881 taaactctct cagttcacga caaacttcga tgccatcttt accaggcatc attaaatcaa
     8941 gtaggattac ttcataatta ttgttcagcg ccatgcttaa tgcttgatca ccatcactag
     9001 cttcttcaat acgatagttt tctctttcaa gatacatctt aagaaggcgt cgtatccggt
     9061 cctcatcatc cacaacaagc actctaactt gttcactcat aagtactcat cccctaactc
     9121 tcatttacat aaaacgatca tttacattca atcagataaa tggaatcttc cgtacccaca
     9181 tacgaaaaaa ccatacaatt gcctatacca aatttcctac gatttaaatt atacatgttt
     9241 ttcacaaaac acgctattag aaagtatatt ttgtatgaaa agttactttt tatttttacc
     9301 aaatcttgct tctgttttta attgttttac ttcatgatgt gataattctc tacgctcacc
     9361 tgcgtttaaa ccgcgtaaat tcaagaacga gtattcttcc cttgataatt tttgcacttc
     9421 aaaaccaaca gcctcaaaca ttttacggac ttgacgattt ctaccttcat gaatcgtgat
     9481 ttctacaata gctttatctt tcgttttatc agaagaacgt acttttactt ttgctggggc
     9541 tgttttgcga ccatcaatca ccacaccacg ttctaactga cgaatcactt cacgttcagg
     9601 aatacctttg attcgtgcga tatatgtttt ggaaacttca tttttcggat gcattagtaa
     9661 gttagcgaaa tccccatcat tggtcattaa taataaacca gatgtatcat aatcaagtcg
     9721 ccctactggg tataatcttt caggaatatc tgcaaaataa tccgctacag ttgtacgacc
     9781 tttatcatct gttacagccg aaaccgttcc tcttggctta taaaaaagga aatagcgatg
     9841 ttcttctttt gttagttgaa ttccctcaac ttcaattcgc tccgtaccac taactttcac
     9901 acctaattct gtgactactt tcccgttcac tgttacttta ccttcttgaa taagcttttc
     9961 tgcttttctt cttgaagtaa tacctgcatt tgcaatcact ttttgtaaac gttccattct
    10021 tattcctcct cctgttcttt actttggtta aaccggtcaa aaaacaggtc catttcattc
    10081 tgatctggtt catctgtcgc tggatcagca agttttggta aatcctctag agaattaagt
    10141 ccaaaagcat ctaaaaactc acttgtagta acgtaaagtt ttgctcgtcc agctccgtcg
    10201 acacgacctt tatccgttac aagtcctttg gctactaaag ttcgaatcgg tccatctgtt
    10261 tgaacgccgc gaacctcgtc tacttccatt cttgtaactg gttggcggta agcaataatt
    10321 gctaatgtct ctaatgatgc ttgcgataaa acggtgttgc ttggaacttc gactaattta
    10381 cgtaaaaatt ctgcatgcgc ttttttcgta gctaattgaa atgttccagc aagctccaaa
    10441 agaattaaac ctctgtcagc acttccgttg tatcgatcac ttaaaagttc tagtaaattg
    10501 agtgcttcaa tgtgcgtaat ttccatgact tcagttaatt gttccgttga aagccccgca
    10561 tctcccgccg caaaaagcaa actctctaat acgcctaatt gttcttctct gttcacgata
    10621 tttcttcccc tttaccttgc acatataaat ccgcaaaact ttccgcttgt tctacttcga
    10681 ccaattttcg cttcattaat tctaacaaag ccaaaaacgt aacgacaagt tgctctttcg
    10741 tttgttcttc aaataactcg tcaaatcgca agcgatgatt gacttgtaaa tttaattttt
    10801 ctaaaacaga atccattctt tgatcaatgg agatttcttg tgttgtaatt cttgtatgga
    10861 gaggtttatt taactttttc cgacgtagca ttttgttaaa agcacttagc atatcgttta
    10921 atgatacgtc cagttctgcc accttagtac catcatcata ttctgctaaa tccattggag
    10981 gtttactgaa ataaaagctc cgttccgcct ctttttcttt taattctttt gcggcttctt
    11041 tgaatcgttt gtattccatt agtttttcga ctaaagcatc acgaggatcc tcttcctctt
    11101 ctagtgtatc ataatcgatt tccagttctt gctttggaag tagcatctta cttttaattg
    11161 ctagtaaagt tgctgccatc actaaatatt cactcgcgac atctaattcc atttcttgca
    11221 ttgtatgaac aaattccatg tattggtccg taatttcagc catagggatg tcataaatat
    11281 cgacttctag ttgtccaatt aaatgaagaa gtaagtcaag cggtccttca aacgcgtcca
    11341 ctttaaaatt catttctacc atatctgtcc cgccctacta taatgaaaga tcattttgca
    11401 ctaaattttc atatgtttcg cgggcaacga ttaatttatc gactccgttt tccacaaaaa
    11461 caactgatgg tcttgggata cggttataat tacttgccat cgcataacca taggctccag
    11521 tacaaaatac cgccaaaact tcaccggcgt ttgatttcgg tagtggtaag tcccatatta
    11581 acatatcacc agactcacag cattttcctg cgatagccac tgtttcttct gcgactttct
    11641 ctgggtttgc cgcaagaaca gcatcgtaat gcgcatcata taacgctgga cggatattat
    11701 cagacatgcc gccgtcaact gcgatataat tccgaattcc cggaacttct ttacgcgatc
    11761 caactttata aagtgttgta cctgcttcac caacaaggga acgacctggc tcaatccaaa
    11821 tttctggaat atcaatatcg ttattattag ccacatcccg cacttcatcc ataatttggc
    11881 gcacatattc gctaggttca agaggttcat cttctgccgt ataacggaca ccgaaaccgc
    11941 caccaagatt aagtactttg gaatcaaatc ccagagtttg gtgccattca actaatttat
    12001 ccataatacg acgagccgct aatttaaaac ccgttgtttc aaaaatttgc gacccaatat
    12061 gacagtgtag gccaattaaa tcaaaggacg cacttgcatg aagcacttgt ttaatcgctt
    12121 tttcagcttg tccatttgta agtccaaatc caaatttcga atcatcttgg cctgttaaaa
    12181 tatagtcatg tgtatgagct tctatccccg gtgtcacgcg aattaaaacc gatgcctttt
    12241 catttcgttc tattaatata tcttctaata aactaatttc ataataatta tcgataacaa
    12301 aacaaccgat gccatagtca agcgccatat gtatttcttc tgcactttta ttatttccgt
    12361 gaaaatgaat tctctcagga ggaaaatttg ctttaattgc tgtataaagt tctccgcctg
    12421 aaacaacatc tagtgataaa ccttcttcgg ccatcagctg ataaatcgct actgcagaaa
    12481 atgctttgct cgcataagcc acttgtgctt ttacgcctag ctcttcgaat gttttcttaa
    12541 atcctcttgc tcggtcacgg attagcgcta catcataaac gtacagtggc gtaccatatt
    12601 tttcagtaag ctttaaagtg tccacccctc caatttcgag atgtccttct gcatttacat
    12661 tcattgttcc aagccgttca aacgtcacgc caatcccacc tttacattat aga
//
LOCUS       DASEAA010000075        12541 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.075, whole genome shotgun sequence.
ACCESSION   DASEAA010000075 DASEAA010000000
VERSION     DASEAA010000075.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12541)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12541)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12541
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.075"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(67..1389)
                     /locus_tag="U0342_001694"
     CDS             complement(67..1389)
                     /locus_tag="U0342_001694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423039.1"
                     /translation="MKHTKKITFSFIIFMTILSITFNPFSAKAAPLMLNLPEPQVDQL
                     YIGDDYITGKLQQEVPMHYPGNAAYVLFNNKQYNITDYTVENDVNFRLKLPKTLEAGD
                     TLNYFTITGNVLDPVAYPGQESYKLAGPFTPIEKANIQVNYVDETNQTLATSDTLSGK
                     LGETYTTSPKAIDGYQVKETPTNATGTYTTNTETIQVNYVYEKTAVEGANVSVEYIDE
                     ATNESIAPTETLSGKIGATFQAEVKELDGYELSQVPSNQSGTYTDQPQSVIFKYKKIT
                     TPVEVAKDVTVTYKDTKGNQLADPVILKGDIGSTFETEAKSFKGYKLTKTPSNHIGSF
                     TSDSQEVDYVYSKDSSIITPPVDPVDPDKPIVINPVKPVNPATPTVPNKNIPKKKITK
                     TVNQTDKTTTASELPKTGDSENNLPLIIGVSLLISGVYIFTTRRKRVK"
     gene            complement(1576..2745)
                     /locus_tag="U0342_001695"
     CDS             complement(1576..2745)
                     /locus_tag="U0342_001695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiolase family protein"
                     /protein_id="HEM2423040.1"
                     /translation="MKEVVIIDAVRTPIGKFGGSLKDISAVDLGATALKGVLERANIA
                     PERVDQVIFGNVLQAGLGQNVARQIAIKAGIPYKVPGVTINEVCGSGLKSVMLGRQAI
                     QLGEADIVAVGGTENMSQAPLLLNPELAGEEIDPKKLRNSMLIDGLTDVYGEYHMGIT
                     AENVAEKFSVTREEQDEFAHNSQMKAANAQEKNLFEEEIIPVKLPDGSFFEADETIRA
                     NSTLEKLATLKSVFKEGGTVTAGNASGINDGASAIILMSKEKAVAENIPYIATIKVTS
                     EVGVDPALMGYAPYYAVNEALTKGGYSIDDIDLFHLNEAFASQSVAVARDLKIPEEKL
                     NIYGGAIALGHPIGASGARIIASLLNELKHENKHIGVASLCVGGGIGIAIILEKA"
     gene            2895..4061
                     /locus_tag="U0342_001696"
     CDS             2895..4061
                     /locus_tag="U0342_001696"
                     /EC_number="2.3.3.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylglutaryl-CoA synthase"
                     /protein_id="HEM2423041.1"
                     /translation="MKIGIDKIGFYTPAFYVDMVELAEARNIDPNKFTIGIGQDKMAF
                     APITQDSVTMGANAALQILDEEDLKKIDLVILATESGIDESKAGAVYIHRLLGIQPFS
                     RAIEIKEACYGATAGINLAKDYVAKHPDSKVLVIGSDIARYGLATGGEATQGAGAVAM
                     VIAADPRCITLEDDNVFYTEDIMDFWRPVYSEYACVEGKYSTEQYIHFFQTIWEKYSA
                     KFGKNLEDFAAICFHLPYTKMGKKALDTIIETAPTEVQERLLENYRLSTLYSRNVGNI
                     YTGSLYLSFISLLDNQADLQAEDKIGFFSYGSGAVGEFFHGVLQPDYKKYIRKDEHAE
                     LLANRTKLAIPDYETKFKQQLPKDGSTFEVDPASDPATIVLTGIQEHKRQYIKK"
     gene            complement(4084..4683)
                     /locus_tag="U0342_001697"
     CDS             complement(4084..4683)
                     /locus_tag="U0342_001697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VanZ family protein"
                     /protein_id="HEM2423042.1"
                     /translation="MKRYFIILILPILSIFAAVTMYFSWFQGWLYFYLKHVMATVSHM
                     GYITVGITAILLYFVTVQLVNWKTNKALLVFCYIIYFSILLCLLFGKASDTQGFSSDT
                     FGFVDTFLSGNLRVIIIGNVLAFIPIGFLLKKLGFFTALLSAGMLIFAVEGAQYMLHV
                     GFFDTGDVFLNVCGIMLGYIVIRFLSPRKYKELKVKPTS"
     gene            complement(4753..5997)
                     /locus_tag="U0342_001698"
     CDS             complement(4753..5997)
                     /locus_tag="U0342_001698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2423043.1"
                     /translation="MAYTKEEKSWIFQDWANSAYSIMITTAILPIYFKGVAASAGIAD
                     STSTAYWGYANSIGTLLISLLAPILGTIADYQFFKKRFFGIFTAIGIGFTFLLVFIPT
                     DAWLLLLGFYVLSLIGFSGANIFYDAFLIDVTTNDRMDRVSSAGYAYGYLGSCIPFII
                     FIIFQATGILPISDVALVNIGFVMTALWWLFFTIPMWKNVHQIHYIPAVKRPVRTSFK
                     RLFHTISHISEHKNIVIFLIAYFFYIDGVDTIFRMATSYGIDLGISQTTLILILLMTQ
                     LVAFPFTLLYGYLAKRFSAKPLIFTAIFVYIIICIYAVFMKSALDFWILAMLVGTSQG
                     GIQALSRSFFGKIIPKKRSNEFYGFYNIFGKFSAIMGPALMGVITQITGKTQYGVASL
                     IVLFLVGGILFVFVKEKNLENL"
     gene            complement(6016..7284)
                     /locus_tag="U0342_001699"
     CDS             complement(6016..7284)
                     /locus_tag="U0342_001699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkaline phosphatase family protein"
                     /protein_id="HEM2423044.1"
                     /translation="MEKHLFVISLDALGALDLKDTTDLPVLRELIKTGTHIQEVETIY
                     PSLTYPAHTSIITGHYPATHGIINNTKVQPEKDSPDWYWYKKAIQVPTLYDLAKEKGM
                     TTAAFLWPVAAKSGIDYNIAEIFPNRFWLTQMMVSLHASSPLFLIDMDRKFGHLRKGI
                     NQPDLDIFLTASVVDTIKAKRPRLLLTHLVDMDSMRHAHGVDSPEAKAALKRHDERLA
                     AIIQATKEAGIYENTVFAILGDHYQINVTHAIRLNVLFAEQGWMTVVDDKITEWDVYA
                     KSCDGSSYIYTKNNQHNQEIQHLLQNMAEIEEILPKEEIALRGAAPNATFMVEGRAGF
                     YFMDDLDGPVYEKVTDEMLGKPGYYKAVHGYSPKKPDYKTTIIFNGPGIKKGDKISNA
                     HLVDEAPTFAHILDLQFPNTAGSVIEAIFE"
     gene            complement(7348..8385)
                     /locus_tag="U0342_001700"
     CDS             complement(7348..8385)
                     /locus_tag="U0342_001700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2423045.1"
                     /translation="MKELSSFLQNRSVRRVGVFILIAFVLYLLRSQMNIILLTFIFSY
                     LITRLENFILRRISIYRQIIVLLLYVLIAAVIIFVFVKYIPVLADQINQLVKFGNTFL
                     TTDSNNDFINYIVSLANQFDIMKYTEQGVSMILTYLTNVGTVLMNVFIALMLSLFFSL
                     GKEHLVSFTNQFSTSKIGFIYEEVKFFGSKFVATFGKVIEAQFIIALVNAILTTIALW
                     ILGFPQLMTLSIMVFLLGLIPVAGVIISLVPLTIIGYSIGGVEYIFYILVVVIIIHAL
                     ESYVLNPKLMSAKTNLPVFYTFIILIFGEHFFGIWGLIVGIPVVMFFLDVLGVTNQEE
                     IEQPKDTISHT"
     gene            complement(8402..9298)
                     /gene="murB"
                     /locus_tag="U0342_001701"
     CDS             complement(8402..9298)
                     /gene="murB"
                     /locus_tag="U0342_001701"
                     /EC_number="1.3.1.98"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate dehydrogenase"
                     /protein_id="HEM2423046.1"
                     /translation="MNNLQTQFPHIAIKLNEPLSKYTYTKTGGAADVFVMPKTIEETQ
                     EVVAYCHQNKIPLTILGNGSNLIIKDGGIRGVILHLDLLQTIERNNTQIIAMSGAKLI
                     DTAKFALDESLSGLEFACGIPGSIGGALHMNAGAYGGEISDVLEAATVLTQTGELKKL
                     KRSELKAAYRFSTIAEKNYIVLDATFSLALEEKNLIQAKMDELTAAREAKQPLEYPSC
                     GSVFKRPPGHFAGKLIQDSGLQGHIIGGAQVSLKHAGFIVNIGGATATDYMNLIAYVQ
                     QTVREKFDVELETEVKIIGEDK"
     gene            9514..10500
                     /locus_tag="U0342_001702"
     CDS             9514..10500
                     /locus_tag="U0342_001702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423047.1"
                     /translation="MIRFDNVSKKYSDDKTAAVNNVTLDIKDGEFFVFIGPSGCGKTT
                     TLKMINRLIPLTTGTIYINEKRISDYDIHELRWDIGYVLQQIALFPHMTIEENIAIVP
                     ELKKWSKEKIHDRITELLDSVGLDPESYRHRKPAELSGGEQQRVGVVRALAADPGIIL
                     MDEPFSALDPISRQRLQQDISALQKKIKKTIVFVTHDMQEALALGDRICVMQGGEIVQ
                     VATPQEIMKNPENDFVKDFLASGHAFNTPILEANFTVKDLIEADLFYSYQTSDGTLGI
                     SSAEPVENLVRRIAEEQSIPVTDEAGNFIGTVSNKHVMQFLARHLESSGELV"
     gene            10497..12011
                     /locus_tag="U0342_001703"
     CDS             10497..12011
                     /locus_tag="U0342_001703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease/substrate-binding
                     protein"
                     /protein_id="HEM2423048.1"
                     /translation="MNTLIDTFTVRKDELFTALVQHIQISFVSLFIAVLIALPLGIYL
                     TRHKRLAEPIIQVAAIFQTIPSLALLGLLIPLVGIGIVPAIIALVIYALLPILRNTYT
                     GIKEVDPALVEASRAMGMNKWKRLYKVQLPLAMPVIMAGIRTAMVLIIGTATLAALIG
                     AGGLGDLILLGIDRNDNSLILLGAIPAALLAILFDFLLRFLEKASFKSTIITISAGIL
                     LTAAIIVVPYFASDKKEITIAGKLGAEPEILINMYKLVIEDETDLKVNVKPNMGKTSF
                     VFNALKSGDIDIYPEFTGTVLETFLKENAKTHDPEEVYTQARDGLAKDFNMSYLKPMK
                     YNNTYALAVSPEFAKENNLEKISDLGPVSDQVKAGFTLEFKDRSDGYKGIQDKYGLTF
                     SNLKTMEPKLRYNAIKSGDINLLDAYSTDSELAQYKLKVLEDDQQLFPPYQGAPLMLT
                     KTLEKYPELKKPLNKLAGKITDDEMRKMNYEVNVNGKSAYTVAKDYLKDQGIIK"
     gene            complement(12047..>12541)
                     /locus_tag="U0342_001704"
     CDS             complement(12047..>12541)
                     /locus_tag="U0342_001704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423049.1"
                     /translation="PTIDELNLAMEVYKQQQRKMDVYQEDITLLNQKIKMQGEILEED
                     WESAENLSIAFAKAAYAQSIYLEATRKNRKQLAKWFHLHQKELPTDKQKALSKMVSVL
                     SDTNAGLVFDQIISLRPLLEEGLMLDHEQSLTQRAAEFNKEFETHCRFYKPNINKVKN
                     LIRQ"
BASE COUNT         3949 a         2277 c         2282 g         4033 t
ORIGIN      
        1 gcttaaaaca aaactattta attacaaaag ccttaatcat aatcatgatt aaggcttttg
       61 taaaacttat ttcactcgtt ttcttcttgt agtgaagata taaactccgc tgattaacaa
      121 actaacaccg ataattaatg gtaaattatt ttcgctgtca cctgtttttg gtaactcgga
      181 agctgtagtt gttttatctg tttggtttac agttttagtg attttctttt ttggaatgtt
      241 tttgtttggt acagttggtg tggctggatt gactggtttt acaggattaa ttacaattgg
      301 tttatctggg tcaactgggt caactggcgg tgtgataatc gagctatctt tactatatac
      361 ataatcaact tcttgactat cactcgtaaa tgagccaatg tggttacttg gtgttttagt
      421 taatttatag cctttaaaag attttgcttc tgtttcgaaa gttgatccga tgtcaccttt
      481 taaaataact ggatcagcaa gttgatttcc tttagtgtct ttatacgtta cagttacatc
      541 ttttgcgact tcaacaggcg ttgttatttt tttatatttg aaaataacgg attgtggttg
      601 gtcggtgtat gttcctgatt gatttgatgg cacttggctt aattcgtagc cgtcgagttc
      661 ttttacttct gcttggaaag tcgcgcctat ttttccagaa agtgtttcgg ttggggcgat
      721 agattcatta gttgcttcat ctatatattc tacagatacg tttgcccctt ctactgctgt
      781 tttttcatat acgtaattca cttgtattgt ttcagtgttt gttgtgtagg tgcctgttgc
      841 gtttgttggt gtttctttta cttggtagcc atcaattgct tttggagatg ttgtataagt
      901 ttcaccgagt tttccggata atgtgtcgga cgttgcaagt gtttggtttg tttcgtcaac
      961 ataattaact tgtatatttg ccttttcaat tggagtgaaa ggtccggcta atttgtatga
     1021 ttcttgtcca ggataagcaa ctggatcaag tacgttacca gttatggtaa aatagtttag
     1081 tgtgtctcca gcttccagcg ttttaggtaa ttttagacgg aaattcacgt cattttcaac
     1141 cgtatagtcg gtgatattat attgtttatt gttaaaaagc acataggctg cattgccggg
     1201 ataatgcata ggtacttctt gttgtaattt tccggtaata tagtcatctc caatatagag
     1261 ttgatccact tgtggttcag gtaaattaag cattaaaggt gctgctttgg ctgaaaaagg
     1321 attaaaagtg atacttagaa ttgtcataaa tataataaag ctaaatgtaa tttttttagt
     1381 gtgcttcata atgtcctcct gcttgttaga ataattacat tctagcacca aaaccgtaca
     1441 aatacttgtt tttgtaagaa gtttcacaaa acaaattggc ggtttgttca caaaaaagac
     1501 aaaaacgaaa tcataaaaag ctaaaatcaa ctattagctg attttagctt tttactaaca
     1561 ttaaatgtac tactatcaag ctttttcaag gataattgca ataccaatac caccaccaac
     1621 acacaaggaa gcgacaccga tgtgcttatt ttcatgtttt aactcattta acaatgaggc
     1681 aataatgcgt gcaccagaag ctccaattgg atggcctagt gcaattgctc caccgtaaat
     1741 attaagtttc tcttctggaa tttttaaatc acgagccact gcaactgact gcgatgcaaa
     1801 agcttcgttt aaatggaata aatcaatgtc atcgatagaa tatccacctt tagttaaagc
     1861 ttcatttact gcatagtatg gcgcgtaacc cataagtgct ggatcgacac caacttcaga
     1921 ggttactttg attgttgcga tataaggaat gttttccgcg actgcctttt ctttcgacat
     1981 taaaataatt gcggaagctc catcattgat accggaagca ttgccggctg taaccgttcc
     2041 accttctttg aatacgcttt tcaaagtagc taatttttct agagttgaat tcgcgcgaat
     2101 cgtttcatcg gcttcaaaaa atgaaccgtc tggaagcttt acaggaataa tttcctcttc
     2161 aaaaaggttt ttttcttgtg cattcgcggc cttcatttgt gagttatggg caaattcatc
     2221 ttgttcttct ctggttacgg agaatttctc tgcaacattt tctgcagtaa ttcccatgtg
     2281 atactcgccg taaacatctg ttaaaccatc aattaacatg ctatttctta gtttttttgg
     2341 atcgatttct tcgccagcta gctcgggatt aagtaaaagt ggtgcttggg acatattttc
     2401 ggtcccacca acggctacga tgtcagcctc ccctagctga attgcttgcc taccaagcat
     2461 aaccgatttt aagccagatc cacaaacttc attgattgtg actccaggta ctttataagg
     2521 aattcctgct ttaatagcga tttgtctagc tacattttgg ccaagtccag cttgtaatac
     2581 attaccaaaa atcacttgat ccacccgttc tggagcaata ttggctcttt ctaaaacacc
     2641 ttttagagcg gtagcgccaa ggtctactgc actgatgtct ttcaaactac caccaaattt
     2701 tccaattggt gttctaactg catctattat aactacttct ttcatagcaa tctcctttaa
     2761 atgtaatcta tccgtattat atcatgaaac tagctaaaaa ctcactagat taagcccaat
     2821 gtattgtatt ttgtgcattt ttctactaaa attaaagtac ttacaaataa aatataaagg
     2881 acttgagctt acatatgaaa attggaattg ataaaatagg tttttatact cctgcatttt
     2941 atgttgatat ggtagaactt gctgaagcta gaaatattga tcctaacaag tttactattg
     3001 gtattggcca agataaaatg gcttttgctc cgattacgca agattcagta acaatgggcg
     3061 caaatgcagc tttacagatt ttagatgaag aagatttgaa aaaaattgat ttagttattt
     3121 tggcgacaga atcaggaatt gatgagtcaa aggctggcgc ggtttatatt caccgtttgc
     3181 taggtattca gccgttctct cgtgcaattg aaataaaaga agcttgctac ggagccactg
     3241 caggaattaa tttagcgaaa gattatgttg cgaaacatcc tgatagtaaa gtactggtta
     3301 tcggatcgga tattgctcgt tacggcttgg caactggcgg cgaagcaact caaggagctg
     3361 gagctgttgc gatggttatt gctgctgatc cacgttgtat cacacttgaa gacgataatg
     3421 tgttttatac agaagatatt atggacttct ggcgccctgt ttactctgag tatgcatgtg
     3481 tagaaggtaa atattcgacg gagcagtaca ttcacttttt ccaaaccatt tgggaaaagt
     3541 attcagcaaa atttggcaag aacttagaag attttgcagc tatttgtttc cacttaccat
     3601 atacaaaaat gggtaaaaaa gcgttagata ctattattga aacagctcca actgaggttc
     3661 aagaaagatt gctagaaaat tatcgtctaa gtacgcttta tagccgcaat gtcggtaata
     3721 tttacactgg ttccctctat ttaagcttta tttccttgtt agacaatcaa gcagatttac
     3781 aagcagagga taaaattggc ttctttagtt acgggtctgg tgctgttggc gagttcttcc
     3841 atggagtgct acaacctgac tataaaaaat atatccgtaa agatgaacat gcggaattgt
     3901 tagcaaaccg tacgaaactt gctattccag attatgaaac gaaattcaaa caacaattac
     3961 ctaaagatgg ttcgacgttt gaagtggatc ctgctagtga cccagcaacc attgtattaa
     4021 ctggtattca agagcataaa cgtcaatata ttaaaaaata atcaaaaaac cgactaggct
     4081 aaatcagcta gtcggtttta ctttgagctc tttatatttt cttggggata aaaaacgaat
     4141 cacaatgtag ccaagcatga taccacaaac attcaggaat acatctccgg tgtcaaagaa
     4201 tcctacatgt agcatgtact gcgccccttc tacagcgaat atcaacattc cagctgatag
     4261 taatgcggtg aaaaaaccta attttttgag taaaaaacca attggtataa aggctaatac
     4321 atttcctatg ataatgacgc gtaaattacc tgataaaaat gtatcaacaa acccaaaagt
     4381 atcacttgaa aatccttgcg tgtcggaagc ctttccgaat aacaaacaga gtagaatact
     4441 gaaataaata atgtagcaaa aaacaagtaa tgctttattt gttttccagt ttactaattg
     4501 tactgtgaca aaatagagta atatcgccgt gatgccaacc gtaatgtagc ccatatgact
     4561 aactgtggcc attacgtgct ttaagtaaaa ataaagccat ccctgaaacc aggaaaaata
     4621 catcgtcact gcagcaaata tagaaaggat tggtaaaata agaattataa agtatctttt
     4681 catcctggcg tcctcctttt caaaggctac ctcaaggata acatgtgaaa ataaggactt
     4741 tcttaaaagg gtttaaagat tttctaagtt tttctctttt acgaacacaa ataaaatacc
     4801 gccaacgagg aaaagtacaa ttaaactagc cacaccgtat tgcgtttttc cagtaatttg
     4861 tgtgattaca cccataagtg cgggccccat gattgctgaa aatttcccga aaatattata
     4921 aaatccgtaa aactcattcg aacgcttttt aggaataatt tttccgaaga atgatctact
     4981 taatgcttga ataccacctt gcgaagttcc aactaacatc gctaatatcc aaaaatcaag
     5041 tgcagatttc atgaaaaccg cataaataca aataataata taaacaaaaa tcgcggtaaa
     5101 gataagcggt tttgcactga aacgtttggc taagtatccg tataataaag tgaacggaaa
     5161 tgcaacgagt tgtgtcatta aaagaattaa aattaatgtc gtctgagaaa tcccaagatc
     5221 aatcccgtat gatgtcgcca tgcggaaaat tgtatcaacc ccatctatgt agaaaaaata
     5281 agcaattaaa aagataacaa tatttttatg ttcactaatg tggctaattg tatgaaacaa
     5341 tcttttaaaa ctagttctga ctggacgttt caccgctgga atatagtgaa tttgatgaac
     5401 gtttttccac atgggaatcg tgaaaaatag ccaccaaagc gccgtcatca caaaaccaat
     5461 attgacgagt gcaacatcac tgattggcaa gatacctgtc gcttggaaaa taataaagat
     5521 aataaaagga atacaacttc ctaaataacc atacgcatat ccggcagatg acactctatc
     5581 catccggtcg ttcgttgtta catcaattaa aaaggcatca taaaaaatat ttgcgccaga
     5641 aaagccaatt aatgagagta catagaaccc cagtaacaat agccaggcat ctgtgggtat
     5701 gaaaactaat aagaaagtaa agccaatccc gatggcagta aaaattccga aaaatcgctt
     5761 tttaaaaaat tgataatctg caatggttcc gagtatcgga gctaataatg aaataagtaa
     5821 tgttccaatc gagttcgcgt atccccagta cgcggtcgat gtactgtcag caatcccggc
     5881 actcgctgct acccctttaa aataaattgg taaaatcgca gttgttatca tgattgagta
     5941 ggcggaattc gcccaatctt gaaaaatcca acttttctcc tcttttgtat atgccaagtg
     6001 tgtttctccc cttttctatt caaatatcgc ttctatgaca gagccagcag tatttggaaa
     6061 ttgtaagtcc aaaatgtgtg caaatgtagg cgcttcgtca actaaatgag cattgctgat
     6121 tttgtctcct tttttaatgc caggtccatt aaaaataatc gtggttttgt aatctggctt
     6181 tttaggagaa taaccgtgaa ctgctttata gtaacctggt tttccaagca tttcatcagt
     6241 gactttctcg taaaccggtc catctaaatc atccataaaa taaaaaccag ccctcccttc
     6301 aaccataaaa gtagcattag gagcagcacc acgaagtgct atttcttctt tcggcaaaat
     6361 ttcttctatt tcagccatgt tttgaagtaa atgctggatt tcttgattat gttgattgtt
     6421 ttttgtgtaa atataactgg aaccgtcaca acttttagcg tagacatccc attccgtaat
     6481 cttatcgtcc actacggtca tccagccctg ttcggcaaaa aggacattta ggcgtatggc
     6541 gtgtgttaca ttaatttgat aatgatcacc tagaatagca aagacagtat tttcataaat
     6601 tccagcttct tttgtagctt ggataatcgc agctaaccgc tcatcgtgtc gttttaaggc
     6661 cgcttttgct tcaggggaat ctactccgtg cgcatgtcgc atactatcca tatcaaccaa
     6721 atgtgttaaa agtaatcttg gccttttcgc tttaattgta tcaactacgc tagctgtcaa
     6781 aaatatatct aagtctggtt ggttgattcc ctttcgcaga tgaccaaatt ttcggtccat
     6841 atctattaaa aataatggtg agctagcatg taatgacacc atcatttgcg ttaaccaaaa
     6901 gcgatttgga aaaatttcag caatattata atcaattcca ctttttgctg caaccggcca
     6961 taaaaaagca gcggtcgtca tccctttctc tttggctaaa tcataaagtg ttggtacttg
     7021 aatggctttt ttataccaat accaatcagg agaatctttt tcaggttgaa cttttgtgtt
     7081 attaataatc ccatgagttg cgggataatg ccccgtgata atacttgtgt gcgctggata
     7141 tgtcagtgat ggataaatgg tttcaacttc ttggatgtga gttcctgtct taattaattc
     7201 ccgtaaaacg ggcaaatctg tcgtatcttt taaatcaagt gctccaagtg cgtctaatga
     7261 aatcacaaaa agatgttttt ccattatttt ctcccccttc aaaaaaacag ggattttcca
     7321 gaaaatctgg aagaaccccc gtgtgaatta cgtatgactg attgtgtcct ttggttgttc
     7381 gatttcttct tgattcgtaa cgccgagcac atctaagaag aacatcacaa ctggaatacc
     7441 aacgattaat ccccaaatac cgaagaaatg ctctccgaaa ataagaataa tgaaagtata
     7501 aaaaactggt aaatttgttt tcgctgacat aagttttgga ttaaggacat aagattcgag
     7561 tgcatggata ataataacaa cgactaaaat gtagaaaatg tattccacgc cgccgataga
     7621 ataaccaatg atagttaacg ggacaagaga aataatcacc cctgccactg gaatcaaacc
     7681 aagcaaaaac accattatgg ataaagtcat caattgcggg aaacctaaaa tccaaagtgc
     7741 tatcgtcgtt aaaatggcat tcacaagcgc aatgataaat tgtgcttcaa taactttacc
     7801 aaaagtagca acaaatttgg atccaaagaa cttcacttct tcatagataa aaccaatttt
     7861 actagtagaa aattgattcg tgaatgaaac taaatgttct tttcctagtg agaaaaatag
     7921 acttaacatt agtgcgataa agacgttcat caatacagtt cccacattag ttaaataagt
     7981 taatatcatt gaaacaccct gttctgtgta tttcataata tcaaattgat tcgctaaact
     8041 aacaatgtaa ttaatgaagt cattgttgct atctgtcgtt aagaaagtat ttccgaattt
     8101 cactagttga tttatttgat ccgctaagac aggaatgtac ttaacaaata cgaagatgat
     8161 aactgcggcg attaaaacat aaagtaacaa cacaataatt tgccgataaa tggagattct
     8221 ccgtaaaata aaattctcta aacgtgtaat aaggtaagaa aaaatgaatg ttagtaaaat
     8281 aatattcatt tggcttctta ataagtataa aacgaaggca attaatataa atacgccaac
     8341 tcgccgcaca ctacgatttt gtaaaaatga actaagctct ttcaaaaatg gatgccctcc
     8401 tctatttatc ttcgcctatg attttaactt ctgtttctaa ctctacatca aatttctcgc
     8461 gaaccgtttg ttggacgtaa gcaattaaat tcatgtagtc agtcgcagtt gccccaccga
     8521 tattaacgat aaatccagca tgttttaaag aaacttgcgc gccgccaata atatggcctt
     8581 gcaagccact atcttgaatt aatttacccg caaagtgacc tggtggacgt ttgaatacac
     8641 taccacaaga tggatactct aatggttgtt tagcttcacg tgctgcagta agttcatcca
     8701 tttttgcttg aattaggttt ttttcttcta aggccaaaga aaaagtagca tctaatacga
     8761 tgtaattttt ttctgcaata gtactaaagc gataagctgc ttttagttct gaacgtttta
     8821 gtttttttaa ttcacctgtt tgtgtcagca cggttgcagc ttctaaaaca tcactaattt
     8881 cgcctccgta tgctcctgca ttcatatgta gtgctccccc aatagatccg ggaataccac
     8941 aagcaaattc aagtccgctt aagctttcat ctaaagcgaa ttttgctgta tcaatgagtt
     9001 tggcaccact catggcgata atttgggtat tgtttctttc aatggtttgt agtaaatcaa
     9061 gatgtaaaat aacgccgcga attccgccgt ctttaatgat tagattggaa ccatttccga
     9121 gaatagtaag agggatttta ttttggtgac agtaggccac cacttcttgc gtctcttcta
     9181 ttgtttttgg cataacgaat acgtctgccg cgccgcctgt ttttgtatag gtatacttag
     9241 acaacggttc atttaattta atcgctatat gcggaaactg tgtttgtaag ttattcatta
     9301 tttatttcaa acctttcatg gttgtagttt aaaaatcact tcctttattt tatcatggaa
     9361 cctctctttt acaaagaatt ccatagtttt tttcttaaat taggaatatt tagggatgat
     9421 ttagggtaat tggatgatat gttcttgagt aatataatta aaaatgttat gatgtagaac
     9481 atacgtttga ttaaaaagga aagggatgaa aaaatgattc gttttgataa tgtatccaaa
     9541 aaatacagcg atgataaaac agcagcagta aataatgtaa ctttggacat aaaagacggc
     9601 gagttctttg ttttcatcgg accgagtggt tgcgggaaaa caacaacact aaaaatgatt
     9661 aatcgcttga ttccactgac aactggaacc atttatatta atgaaaagcg aattagtgat
     9721 tatgatattc atgaacttcg ctgggatatc ggctatgttt tacaacaaat tgcgctcttt
     9781 cctcacatga ctattgaaga aaatatcgct atcgttccgg aattaaaaaa atggagcaag
     9841 gagaaaattc atgaccggat tacggaatta ttagatagtg ttggcttgga tcctgaaagt
     9901 tatcgtcatc gcaaaccagc tgaattatct ggtggtgaac agcaacgggt tggtgttgtt
     9961 cgtgcccttg cagcagatcc tggaattatt ctgatggatg aaccttttag tgcacttgat
    10021 ccgatttctc gccaacgttt gcaacaagat atttctgcgc ttcaaaagaa aatcaagaaa
    10081 acgattgtat ttgttaccca tgatatgcaa gaggctttag cgcttggtga cagaatttgc
    10141 gtaatgcaag gcggtgaaat tgtccaagta gcaacaccac aagaaattat gaaaaatcca
    10201 gaaaatgact tcgttaaaga tttcttagca tctggacatg ctttcaatac gccaatttta
    10261 gaagcaaact ttacggtgaa ggacttaata gaagctgacc tgttttattc gtatcaaact
    10321 agtgatggca cacttggaat ttcatcagcg gagcctgtcg aaaaccttgt tcggcgaatc
    10381 gcggaagaac agtcaattcc tgtcacagac gaagcaggta attttatcgg tacagtttca
    10441 aataaacatg tgatgcaatt cttagcgcgt catctggaaa gttcaggtga gcttgtatga
    10501 atactcttat agatacattt actgtccgta aagatgaact attcacagct ttagtacaac
    10561 atattcaaat ttcctttgtc tctcttttta tagcggtgtt aattgcctta cctcttggga
    10621 tttatttaac tagacataag cgtctcgctg aaccaattat tcaagtagcc gctatttttc
    10681 aaacaattcc ttctctggca ctacttggtt tgttaattcc gctcgttggt attgggatag
    10741 ttccagcgat tattgcgctt gttatttacg ccctcttacc tattttaagg aatacatata
    10801 ctgggataaa agaagtcgac ccagcccttg ttgaagcctc acgcgcaatg ggaatgaaca
    10861 aatggaaaag attatacaaa gtacaacttc ctcttgctat gccagtaatt atggctggta
    10921 ttcgtacagc gatggtatta atcatcggta cagcgacact tgctgcctta attggtgcag
    10981 gtggactcgg ggacttgatt ctactaggga ttgaccgcaa tgataatagt ttaattctat
    11041 taggtgcaat tccagcagcg ttactagcga ttttgtttga tttcttacta cgtttccttg
    11101 aaaaagcatc ttttaaaagc acaattatta cgatttcagc aggtatctta ttaactgccg
    11161 caattatcgt cgttccttat tttgcgtctg ataaaaaaga aattacgatt gcaggtaaat
    11221 taggtgcaga accagaaatt ttgattaata tgtacaaact agttattgag gacgaaacag
    11281 atttaaaagt taatgtgaag ccgaatatgg gtaaaacgag tttcgttttt aatgcattaa
    11341 aatcaggtga tattgatatt tatcctgaat ttacaggaac agtgctagag acattcttaa
    11401 aagaaaatgc aaaaacacat gatcctgaag aagtgtatac gcaagcacgt gatggtttgg
    11461 caaaagattt taatatgtct tatttaaaac cgatgaaata taataacacc tatgctcttg
    11521 cggtttcacc agaatttgca aaagaaaata atttagaaaa aatatctgat cttggcccag
    11581 tatctgacca agtaaaagct ggattcacac tggagtttaa agaccgttcg gatggttata
    11641 aaggcattca agataaatat ggtctcacat tctctaacct gaaaacaatg gagccaaaac
    11701 tgcgatataa tgcaattaaa tctggagaca tcaatttact agatgcttac tcaacagata
    11761 gtgaactcgc ccaatataaa ttaaaagtcc tagaagacga tcagcagctc ttccctcctt
    11821 atcaaggtgc accgcttatg ctgacaaaaa cattagaaaa atacccagaa ctgaaaaaac
    11881 cattaaataa actagctggg aaaattacag atgatgaaat gcgtaaaatg aattatgaag
    11941 tgaatgtaaa tggcaaatca gcttatacag ttgccaaaga ctatttgaaa gatcaaggta
    12001 ttattaaata aaaaagcgaa gtggttttta cgccacttcg ctttttttat tgtctaatta
    12061 agtttttgac tttattaatg tttggtttat aaaaacgaca atgtgtttca aattctttgt
    12121 tgaattcagc agctctttgg gttagtgatt gctcgtgatc aagcatcaag ccttcttcaa
    12181 gtagtggtct aagtgaaata atttgatcga aaacaagacc ggcatttgtg tcacttagaa
    12241 cagataccat tttacttaac gctttttgtt tgtcagtagg taattctttt tgatgaagat
    12301 ggaaccattt tgctaattgt ttgcgatttt ttcgggttgc ttctaaataa atactttgcg
    12361 cataagctgc tttagcaaat gcaatcgata aattttcagc ggattcccag tcttcttcta
    12421 gaatttcacc ttgcattttg attttttgat tgagtagagt aatatcttct tgataaacat
    12481 ccattttgcg ttgttgttgc ttataaacct ccatcgctaa attaagttca tcaatagttg
    12541 g
//
LOCUS       DASEAA010000076        12458 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.076, whole genome shotgun sequence.
ACCESSION   DASEAA010000076 DASEAA010000000
VERSION     DASEAA010000076.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12458
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.076"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            112..573
                     /locus_tag="U0342_001705"
     CDS             112..573
                     /locus_tag="U0342_001705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465093.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF441 domain-containing protein"
                     /protein_id="HEM2423050.1"
                     /translation="MFTESMLFLLLFLLLGLIAKNNSLIIAVAVVILLKLFHVDGKAM
                     EMIQAKGINWGVTIITVAILIPIATGQIGFKDLIDSFKSAAGWIGLGAGIAVSILAKK
                     GVGYMAVDPQVTVSLVFGTILAVVLFRGIAAGPVIAAGIAYMAMQLVAFIK"
     gene            610..1731
                     /gene="citZ"
                     /locus_tag="U0342_001706"
     CDS             610..1731
                     /gene="citZ"
                     /locus_tag="U0342_001706"
                     /EC_number="2.3.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465092.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="citrate synthase"
                     /protein_id="HEM2423051.1"
                     /translation="MTLSKGLENVYVAETSISSIIDDMLTYVGYGIDDLMENNASFEE
                     VIYLLWHLRLPNKDEFKKFKREIQENMAVSETIITSLRMQNHQKLHPMSVLRTTVSML
                     GVFDTEAELDDGEAVYRKGLRLQAKMPTIVAAFSRIRRGLDPIPPREDLNMAANFLYM
                     ITGEEADALSVEAMNKALVLHADHEFNASTFTARVCVATLSDVYSGVTAAIGALKGPL
                     HGGANERVFDMLEEIDQAGDVRNYIQEKIDTKQKIMGFGHRVYRGGDPRAQHLREMSR
                     KLTAEKGEEKWFDISLQVEESVWELKHLKPNVDFYSASVYHALGIDRDLFTLVFSVSR
                     VSGWLAHIFEQYRDNRLIRPRAIYVGPENRSYLPVEERI"
     gene            1751..3013
                     /gene="icd"
                     /locus_tag="U0342_001707"
     CDS             1751..3013
                     /gene="icd"
                     /locus_tag="U0342_001707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465091.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent isocitrate dehydrogenase"
                     /protein_id="HEM2423052.1"
                     /translation="MSQKIQVENGVLKTPNNPVIPFIEGDGTGSDIWAAAKRVLDAAV
                     KKAYNGEKEIAWKEVLAGEKAFKQTGEWLPQATLDTIDEYLIAIKGPLTTPIGGGIRS
                     LNVALRQELDLYVCLRPVRYFKGVPSPVKRPEDTDMVIFRENTEDIYAGIEFKEGSEE
                     SKKLIDFLKSEFGVDKIRFPETSGIGIKPISKEGTERLVRSAIEYAIKEGRKSLTLVH
                     KGNIMKFTEGAFKNWGYDLCEREYGDKVFTWNEYDRIKEAEGTEVADAKQKEALAAGK
                     ILVKDSIADIFLQQILTRPAEFDVVATMNLNGDYISDALAAQVGGIGIAPGANINYLT
                     GHAIFEATHGTAPKYAGLDKVNPSSVILSGTLLLEHIGWGEAAALINQSMEKTIAAKT
                     VTYDFARLMDGATEVKCSEFADELIKNF"
     gene            3178..5805
                     /gene="polA"
                     /locus_tag="U0342_001708"
     CDS             3178..5805
                     /gene="polA"
                     /locus_tag="U0342_001708"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465090.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase I"
                     /protein_id="HEM2423053.1"
                     /translation="MNKLVLIDGNSIANRAFYALPLLNNDKGVYTNAVYGFAMMLMNV
                     LEKEKPSHVLVAFDAGKTTFRHTTFKGYKGGRQKTPSELSEQFPFIRELLTAYDIPQY
                     ELANYEADDIIGTLTKKAEADGMEVAIITGDRDLTQLASEKTTVYITKKGIADMETNT
                     PETLKEKYNLTPQQIIDMKGLMGDSSDNIPGIPGVGEKTALKLLHEFGGTVESVLEHA
                     EEISGKKLKEKVLENKELAILSKELATINVDSPIECTVESTKYDGYQTEKVIPLLKEM
                     NFTTLLKNIEGDTPEETKELKELSFEIVTELKEKHFGGKTALYVELENDNYHTANFIG
                     LTVHSSQGTYFFTKETAESSEVFRKWVESDQTKVVYDAKKTMVAMNRIGLAISGITFD
                     IMLASYLLNPSDSIDDFTSVAIRHDYTEVETDEAVYGKGAKRSTPEESIVAAHLARKA
                     VAIADLEKRLVDDLEENEQLALMEDLELPLTFVLAEMEMQGVSVDTERLENMKVELAG
                     RLKTLEESIHSLAGEEFNINSPKQLGVILFEKLGLPAVKKTKTGYSTAADVLESLSGK
                     HAIIDEILLYRQLGKIQSTYIEGLLKVTDKETHKVHTRFNQTLTQTGRLSSVDPNLQN
                     IPIRLEEGRKIRQVFVPSKPGWKMFSADYSQVELRVLAHISEDENLIYAFKHDYDIHT
                     KTAMDVFHVEQDEVDSLMRRQAKAVNFGIVYGISDYGLSQNLGITRKEAKDFIDRYFV
                     SYPAVKEYMQDIVRFAKEKGYVETILHRRRYIPEIVSRNFNVRGFAERTAMNTPIQGS
                     AADIIKKAMILMSERLVSEKLEAKLLLQVHDELIFEAPEAEIAKLEEIVPDVMENAVE
                     LSVPLKVDSAFGDTWYDAK"
     gene            5829..6650
                     /gene="mutM"
                     /locus_tag="U0342_001709"
     CDS             5829..6650
                     /gene="mutM"
                     /locus_tag="U0342_001709"
                     /EC_number="3.2.2.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465089.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-formamidopyrimidine glycosylase"
                     /protein_id="HEM2423054.1"
                     /translation="MPEMPEVENVRATLQELVPGKKIDQVIVRVPKMIVSTPPDEFVH
                     MLVGQEIEGVRRRGKFLLFDLTNCTILSHLRMEGKFRLMDEKEEVSKHTHIIFHFEDH
                     TELRFLDVRKFGTMEVTNKYGEGETRSIKKLGPEPLTQAFTSTDFATGVKKTSRAIKT
                     ALLDQKLVAGVGNIYADEICFEAKVRPERAANSLSDKEIKRIFEATKSIMTEAVALGG
                     STVRTYVNSQGKLGQYQDKLKVYGKTDEPCVVCGKPIEKIKLNGRGTHFCPNCQK"
     gene            6667..7269
                     /locus_tag="U0342_001710"
     CDS             6667..7269
                     /locus_tag="U0342_001710"
                     /EC_number="2.7.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465088.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dephospho-CoA kinase"
                     /protein_id="HEM2423055.1"
                     /translation="MGKTIGLTGSVATGKSTVSNMIQQAGIPLVDADIAARKVVERGT
                     EGLKEIVAYFGEEILLADGTLNRAKLGEIIFKDKEKREKLNEITHPRVKDYMLEARER
                     FFEAGEELVFFDIPLLFESHLESLVDKIVVVWTTPETELKRLMERNNLTKEDALRRIE
                     SQMGIDEKARKADFVIDNNESLEKTQKQVLTFIKRFVKNK"
     gene            7347..7811
                     /gene="nrdR"
                     /locus_tag="U0342_001711"
     CDS             7347..7811
                     /gene="nrdR"
                     /locus_tag="U0342_001711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465087.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator NrdR"
                     /protein_id="HEM2423056.1"
                     /translation="MRCPTCQYNGTRVVDSRPADDGNSIRRRRECEKCGFRFTTFEKV
                     EESPLIVVKKDGAREEFAREKVRRGLIRACEKRPVSAEQIEEIVNEVERELRNIGDSE
                     IASDLIGEKVMNKLANLDEVAYVRFASVYRQFKDISVFVEELKDLMEKNKDR"
     gene            7817..9193
                     /locus_tag="U0342_001712"
     CDS             7817..9193
                     /locus_tag="U0342_001712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replication initiation and membrane attachment
                     family protein"
                     /protein_id="HEM2423057.1"
                     /translation="MTEFWMELQAVDSYQVKASGILTGADRKIITMLYQPLMGAECLA
                     LYQTLFTEVEENRLWSEAHSHVQLLNMLDISLKALFEARLKLEGLGLLKSYVKTENDQ
                     RFYIYEILPPLSPEKFFSDGLLNIYLYSKIGNAQFQRLRRFFADEAFDTATYSEITRS
                     FQDVFEPFKGGSSAVTTETSQKLLDKVTPKEIEFDDASFDFNLFLSLLSPGMIAREKI
                     TKEVRQTILKLHGIYQVSEKDMPSYLYRALDANGEIDIVYLRKIVREGYTIEHGAPPK
                     LQMKQETPVDKEPEESLNDEEALQVYLESITPFQLLVDISDGAVPAETDLRVVEEVMN
                     QQNLPVPVMNVLIEYVLLRLDRKLSKNYMMTIAAHWKRKNVKTAKEAMDLAWQEHEKY
                     KRLQEEPATPKTNNYNRNYQKTTRKEILPDWFDKEQVAPAENKMTDKEKQTLEEQVRE
                     IKERLNKR"
     gene            9203..10126
                     /gene="dnaI"
                     /locus_tag="U0342_001713"
     CDS             9203..10126
                     /gene="dnaI"
                     /locus_tag="U0342_001713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primosomal protein DnaI"
                     /protein_id="HEM2423058.1"
                     /translation="MDNIERTLGQLFEGRDFEKEYQGLKQQVLHYQPIQDFFKEHKEE
                     VTEQLVNQNLSNLYEFMTQHKKFTEQEETIMPGYAPKLVLNGEFITVTYYPTKEKIEE
                     DKRRAVERRIRSLYMPKQVVDANLADFYTDEESRQLALVEAYQFLNNYPPKSGERVKG
                     LFIHGSFGTGKSYLLGALAKELALKGISTTLVYLPEFMREVKQSISDNTVGEKIQFAK
                     ETEVLMLDDIGAESMTAWTRDEVLGAILQFRMQEELPTFFSSNYNMDQLENHLMFAQN
                     GTEEKLKARRIMERVRYLSKEVNLEGKNRRF"
     misc_binding    10177..10407
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            10476..12398
                     /gene="thrS"
                     /locus_tag="U0342_001714"
     CDS             10476..12398
                     /gene="thrS"
                     /locus_tag="U0342_001714"
                     /EC_number="6.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine--tRNA ligase"
                     /protein_id="HEM2423059.1"
                     /translation="MKITFPDGAVKEFEPGVSTADIAASISPGLKKKALAGKLNGELL
                     DLVTPIHEDGAIEIVTPDHEDALGILRHSTAHLMAQALKRLYPDVKFGVGPAIESGFY
                     YDIDTEAVISDESLVEIEKEMQKIVRENVPIEREVVSREEAIKRFKAIGDQYKLELIE
                     AIPEDETVTIYTQGEFFDLCRGVHVPSTGKIQVFKLLSVAGAYWRGDSNNKMLQRIYG
                     TAFFDKNGLKEFIQMQKEAKERDHRKLGKELDLFANSIEVGQGLPLWLPKGATIRRVI
                     ERYIVDKEERLGYNHVYTPIMANVELYKTSGHWDHYHEDMFPTMKMDNEELVLRPMNC
                     PHHMMIYKNDIHSYRELPIRIAELGMMHRYEMSGALSGLQRVRGMTLNDAHVFVRPDQ
                     IKDEFKRVVELILEVYKDFDIKDYSFRLSYRDPKNTEKYFDDDAMWEKAQAMLKSAMD
                     EMEMDYFEAEGEAAFYGPKLDVQVKTAIGKEETLSTVQLDFLLPERFDLTYIGEDGEK
                     HRPVVIHRGVVSTMERFVAYLIEEYKGAFPTWLAPVQMELIPVNADAHLDYAKGVQDK
                     LQRAGLRAEVDDRNEKLGYKIREAQTKKIPYALVLGDQEVEAGSVNVRRYGSKDSETM
                     DLDAFIAQVVAEVSKY"
BASE COUNT         4234 a         2065 c         2727 g         3432 t
ORIGIN      
        1 aaagggcaat tcattttcct tatggcattt tagtattact ataaggtatg tttatgatat
       61 aataattgtt atctcgcttc ctagatgcgt gatattgaaa ggtgacttaa tatgtttacg
      121 gaaagtatgt tgtttttact tcttttttta cttctcggac ttatagcaaa aaataattcg
      181 cttatcattg ctgtagctgt cgttattttg ttgaagttat ttcacgtcga tggcaaagca
      241 atggaaatga ttcaagcaaa agggataaat tggggtgtaa cgattattac ggttgctatc
      301 ttaattccaa tcgcaactgg tcaaatcggt tttaaagatt taattgattc tttcaaatcg
      361 gcagctggct ggattggcct tggtgcagga attgccgttt ctatcttagc gaaaaaaggt
      421 gtaggctata tggccgttga tccacaagtg actgtctcac tagtattcgg gaccatttta
      481 gcagtggtgc tttttagagg gattgctgct ggaccagtaa ttgcagctgg tattgcgtac
      541 atggcaatgc agttagttgc attcataaaa taagtacata cgtaaaaaag gataaaagga
      601 ggaaatgaaa tgacgttatc taaaggctta gaaaatgtat atgttgctga aacttccatt
      661 agctctatca ttgatgatat gttaacttat gttggctatg gtattgacga tttaatggaa
      721 aataacgctt cttttgaaga agtgatttac ttattatggc atttacgttt gccgaataaa
      781 gatgaattta aaaaatttaa acgagaaatc caagaaaata tggcagtgtc tgaaacaatc
      841 attacgagct taagaatgca aaatcaccaa aaattacatc cgatgagtgt tttaagaact
      901 acagtttcta tgctcggtgt atttgataca gaagctgaat tagacgacgg ggaagcagtt
      961 taccgtaaag gtttgcgact tcaagcgaaa atgccaacca ttgttgccgc tttttccaga
     1021 attcgtcgcg gactcgatcc aattccaccg agagaagatt taaatatggc agcaaatttc
     1081 ctatatatga ttacaggaga agaagcagat gcattatcag tagaagcaat gaataaagcg
     1141 ctcgtactgc acgctgatca cgaatttaat gcgtctactt ttacagcgcg agtttgtgtg
     1201 gcaacgcttt cggatgttta ttccggcgta acagctgcaa tcggtgcgct gaaaggcccg
     1261 cttcatggtg gtgccaatga acgcgtattt gatatgttag aagaaattga ccaagctggt
     1321 gatgtgcgta attacattca agaaaaaatt gatacgaagc aaaagattat gggatttggt
     1381 caccgtgttt atcgcggcgg agatcctcgt gcgcaacatt tgcgtgaaat gtccagaaag
     1441 ttaactgctg aaaaaggcga agagaaatgg tttgatattt cgctgcaagt agaagaatct
     1501 gtttgggaat tgaaacactt aaaaccgaat gtcgatttct attcagcctc cgtttatcat
     1561 gcgcttggta ttgaccgcga cttgtttacg cttgtgtttt ctgtgagtcg tgtatctggt
     1621 tggttagcac acattttcga gcaataccgt gataatcgtc ttattcgtcc gcgtgcaatt
     1681 tacgttggac ctgaaaatag aagttattta cctgtagaag aacgaattta atcgaggagg
     1741 aacaaacttt atgagtcaaa aaattcaagt agaaaacggt gtgctcaaaa caccaaacaa
     1801 cccagtcatt ccttttattg aaggggacgg aactggttca gacatctggg cagctgcaaa
     1861 acgcgtttta gatgccgcag taaaaaaagc ttacaatggc gaaaaagaaa ttgcttggaa
     1921 agaagtatta gctggtgaaa aagcatttaa acaaacagga gaatggttac cacaagcgac
     1981 tttagataca attgatgaat atttgattgc tattaaagga ccgcttacta ctccaatcgg
     2041 tggaggcatt cgttcgttaa acgttgccct gcgccaagag ttagatttat atgtttgttt
     2101 acgtccagtt cgttatttca aaggcgttcc ttcaccggtg aaacgtccgg aagacacaga
     2161 tatggtcatt ttccgtgaga atacagaaga tatatatgca gggattgaat ttaaagaagg
     2221 cagcgaagaa tcaaaaaaac taatcgactt cttaaaatct gagtttggcg ttgacaaaat
     2281 tcgtttcccg gaaacttctg gtattggtat taagccaatt tccaaagagg gaacagagcg
     2341 tttagtgcgt tcggcgattg aatatgcaat taaagaaggt cgtaaatcat taacgcttgt
     2401 acacaaaggg aatatcatga aattcacaga aggagctttc aaaaattggg gctatgactt
     2461 atgtgaacgc gaatatggcg ataaagtatt tacttggaat gagtatgatc gcattaaaga
     2521 agcagaagga acagaagttg ctgatgcgaa acaaaaagaa gcgcttgctg ctgggaaaat
     2581 tttagtcaaa gattcgattg cggatatttt cttgcaacaa atcttaactc gcccggctga
     2641 atttgatgta gttgctacaa tgaacttgaa tggagattac atttctgatg cacttgctgc
     2701 tcaagtaggc ggaatcggta ttgctccagg agcaaacatt aactacttaa ctggccatgc
     2761 aattttcgaa gcgacgcatg gtactgcacc gaaatatgca ggtcttgata aagtgaatcc
     2821 ttcatcagtt attttatctg ggacacttct tcttgaacat attggttggg gtgaagcggc
     2881 tgcattaatt aatcagtcaa tggaaaaaac aatcgctgcg aaaaccgtaa cttatgattt
     2941 tgctcgatta atggatggtg cgacagaagt taaatgttcg gaatttgcag atgaattaat
     3001 aaaaaatttc taaaacaatc tattttaact tctaaaacta gtctgtattt ttatttttaa
     3061 ccataaatat acgtttttaa aacaaaccat ttaatcccat tcggataagt ggtttgtttt
     3121 tatgttccta tggtaaaata gacacaagtg aatgacaata tcgaggagga tatccctgtg
     3181 aataaattag tattaattga tggaaatagt attgcgaatc gcgcctttta tgctttaccg
     3241 cttttaaata atgataaagg tgtttacaca aatgcggtgt atggtttcgc aatgatgttg
     3301 atgaatgtac tcgaaaaaga aaaacctagc catgtgctcg ttgcatttga tgctgggaaa
     3361 acaactttca gacatacaac atttaaaggt tataaaggcg gacgtcaaaa aaccccaagt
     3421 gagttatctg aacagtttcc attcatccga gaacttttaa cggcgtatga tatcccgcaa
     3481 tatgaacttg ccaattatga ggcagatgat attatcggaa cattgacgaa aaaagcggaa
     3541 gcagacggaa tggaagtagc aatcattacc ggagaccggg acttaacgca attagcttct
     3601 gaaaaaacaa cggtttatat tactaaaaaa ggcatagccg atatggaaac caacacacca
     3661 gaaacactaa aagaaaaata caatctgact cctcaacaaa tcattgatat gaagggttta
     3721 atgggtgatt cctccgataa tattcctggt attccaggcg ttggtgaaaa aactgcctta
     3781 aaactcttac atgaatttgg tggaacggtg gaaagtgtgt tagagcatgc cgaggaaatt
     3841 tccggtaaaa aactaaaaga aaaagtactg gaaaataaag aattagctat tttaagtaaa
     3901 gagttagcta caatcaatgt ggattcaccg attgaatgca cggtcgaaag cacgaaatac
     3961 gacggctatc aaacagaaaa agttatccct ttattaaaag aaatgaattt tacaacactt
     4021 ttgaaaaata tcgagggaga tacaccagaa gaaacgaaag aactaaaaga gttgtctttt
     4081 gaaatcgtaa cagaattaaa agaaaaacat tttggtggga aaaccgcgct ttatgtggag
     4141 ctagaaaacg ataattacca tacagctaat ttcattggat taacagtaca ttctagccaa
     4201 gggacgtatt tctttacaaa agaaacagcc gaaagtagtg aggtattccg caaatgggta
     4261 gaaagtgatc aaacaaaagt agtgtacgat gcgaagaaaa caatggttgc aatgaaccgc
     4321 attggtttag ccatttctgg tatcaccttt gatatcatgt tagcatctta cttgctaaat
     4381 ccatctgatt cgattgatga ctttacaagt gttgcaatac gacatgatta cacagaagta
     4441 gaaacagatg aagcagtcta cggaaaaggt gctaaacgta gcactcctga agaaagcatt
     4501 gttgcggcac acttagctag aaaagcagtg gctattgctg acttagagaa aagactagtt
     4561 gatgatttag aagaaaatga acaactagct ttgatggaag accttgagct acctctaact
     4621 tttgtattag cagaaatgga aatgcaaggg gttagtgtag atacagaacg tctagagaat
     4681 atgaaagtgg agctagcggg tagactgaaa acattggaag agtcgatcca ttctctagcc
     4741 ggcgaagaat tcaatattaa ttcaccgaaa caactaggtg tgattttatt tgaaaagctt
     4801 ggtctcccag ctgtcaagaa aacaaaaaca ggttattcaa cggctgccga tgtactggaa
     4861 agtttatctg gtaaacacgc gattattgat gaaattttgt tatatcgtca acttggtaaa
     4921 attcagtcca cttatatcga agggctgctt aaagtgacag ataaagaaac acataaagta
     4981 cacacacgtt tcaaccaaac attaacgcaa acaggacgct taagttcagt tgatccgaac
     5041 ttgcaaaata tccctattcg tttagaagaa ggacggaaaa ttagacaagt tttcgtaccg
     5101 agtaaaccag gttggaaaat gttttcagcc gattattctc aagtagagct gagagtctta
     5161 gcacatattt cggaagatga aaatttaatt tatgcattta agcacgatta tgatattcat
     5221 acgaaaacgg cgatggacgt gtttcatgtt gagcaagacg aagtggattc attaatgcgt
     5281 cgtcaggcta aagcggtaaa ctttggtatt gtatatggaa ttagtgatta tgggctttcg
     5341 caaaatcttg gtattacgcg taaagaagca aaagacttta ttgatcgtta ttttgtgagc
     5401 tatccagccg tgaaagaata tatgcaagac atcgttcgtt ttgcgaaaga aaaaggctat
     5461 gtagagacca ttttacatcg tcgtcggtat attccagaga ttgtcagtcg taattttaat
     5521 gttcgcggat ttgcagaaag aacggcgatg aacacgccta ttcaaggtag tgccgctgat
     5581 attatcaaaa aagcgatgat tctgatgagc gagcgtttag tatctgaaaa attagaagca
     5641 aaattattac tacaagtaca cgatgaatta atcttcgagg cgcctgaagc tgaaatcgct
     5701 aaattagaag aaattgtccc agatgttatg gaaaatgcag tagagctttc tgtaccgcta
     5761 aaagtagata gcgcatttgg tgacacttgg tacgacgcga aataaataga gaaacgggga
     5821 gtttatatat gccagaaatg ccggaagtag aaaatgtccg cgcaacttta caagaattag
     5881 tcccaggtaa aaaaatagat caagtaattg ttcgtgttcc aaaaatgatt gtatcaacac
     5941 cacccgatga gtttgtgcat atgcttgtcg ggcaagaaat agagggtgta cgccgtcgtg
     6001 gtaaattctt actttttgac ttaaccaact gtacgatttt atcgcattta cgaatggaag
     6061 gtaaatttcg gttaatggat gaaaaggaag aggttagcaa gcatacgcat attatttttc
     6121 attttgaaga tcacacggaa ttgcgttttt tagatgtgcg aaaatttggc acgatggaag
     6181 taacaaataa atacggtgag ggtgaaacgc ggtcgattaa aaagcttggc ccagaaccgc
     6241 tgacgcaagc ctttacatca acggattttg cgactggtgt aaaaaaaaca agccgcgcca
     6301 tcaaaacggc tttacttgat caaaagttag tagccggagt aggaaatatt tatgcggatg
     6361 aaatttgttt tgaagcaaaa gtgcgcccgg aaagagcagc taactcactt tcagacaaag
     6421 aaatcaaacg tatttttgaa gcgacgaaaa gtattatgac tgaagctgta gcacttggtg
     6481 gctccactgt cagaacatat gtaaattcgc aagggaagct tggacaatat caagataaat
     6541 taaaagtata cggcaaaaca gacgaaccgt gtgttgtttg tggaaagcca attgaaaaaa
     6601 ttaaattaaa cggacgcggg acacattttt gcccgaattg ccaaaaatag aaagcgagct
     6661 gaaatcatgg ggaaaacgat tggattaaca ggaagtgtag caacagggaa atcaacagtg
     6721 agcaacatga ttcagcaagc gggtattcca ttagtagatg cagatattgc tgctagaaaa
     6781 gtagtggagc gtggcacaga aggactaaaa gaaatcgttg cttattttgg ggaagaaatt
     6841 ttacttgcag atggcacatt aaatcgagct aaattaggag aaattatttt taaagataag
     6901 gaaaagcgtg aaaagttaaa tgaaattacg catccacgtg tgaaagacta tatgttggaa
     6961 gcgcgcgaac gtttttttga agcaggagag gagcttgtct ttttcgatat tccgcttttg
     7021 tttgaaagtc atttagaatc gttggtggat aaaatagttg ttgtttggac cacccctgaa
     7081 acagagttaa aacgcctgat ggagcgaaat aatctaacaa aagaagatgc attaagaaga
     7141 attgaaagcc aaatgggaat cgatgaaaag gcgagaaaag ctgattttgt catcgataat
     7201 aatgaatcac ttgaaaagac acaaaaacaa gttcttacat ttatcaagcg ttttgtaaag
     7261 aacaaatagc cacccttact ttcacatggt ataatgaggc atacaaataa acagatagag
     7321 aaagctagag ataggagtga gtttttgtga gatgtcctac ttgtcaatat aatggtacac
     7381 gtgttgtaga ctcaagaccg gcagatgatg gcaattccat ccgaagacgg cgtgaatgtg
     7441 aaaaatgcgg atttcgtttt actacttttg aaaaggtaga agagagtcct ttaatagttg
     7501 tgaaaaaaga tggagcaaga gaagaattcg ctcgtgaaaa agtgcgacgc ggcttaataa
     7561 gagcatgtga aaaacgacca gttagcgctg aacaaattga agaaattgtc aatgaggtag
     7621 aacgtgaact gcgaaatatt ggagacagtg aaatcgcgtc tgacttaatt ggtgaaaaag
     7681 tgatgaataa attagcgaat ctcgatgaag tagcctacgt gcgcttcgct tcggtgtatc
     7741 gccaatttaa agatattagt gtgtttgtcg aagagttaaa agatttaatg gaaaaaaata
     7801 aagataggtg agtaaattga cggaattttg gatggagctt caagcggtag acagctatca
     7861 agtaaaagca agtggaatct tgaccggcgc cgacagaaaa attattacga tgttatatca
     7921 accgctaatg ggggcggagt gtcttgcttt atatcaaaca ctgttcacag aagtcgaaga
     7981 aaacagactt tggtcagaag cgcattcgca cgtccaactt ttaaatatgc ttgatattag
     8041 tttgaaagcg ttattcgagg caaggctaaa attagaaggc ttaggtcttt taaagagtta
     8101 tgtgaagacc gaaaacgatc aacgctttta tatttacgaa atcttgccac cgttatcacc
     8161 agaaaagttt ttttcagatg gtctattaaa tatttattta tatagcaaaa ttggcaatgc
     8221 tcagtttcaa cgtttgcgtc gttttttcgc agacgaggca tttgacacag ctacatacag
     8281 tgaaatcact cgttcgtttc aagatgtttt cgaaccgttt aaaggtggta gtagtgcagt
     8341 tacgactgaa actagtcaaa agttactaga caaagtgacg ccaaaagaaa ttgaatttga
     8401 tgacgcgagt tttgacttta atttgttttt gagcttgctt tcaccgggaa tgattgctcg
     8461 cgaaaagata acaaaagaag tacgccaaac gatattaaaa cttcacggga tttatcaagt
     8521 ttctgaaaaa gatatgccga gttatttgta tcgtgcgctt gatgcaaatg gtgaaatcga
     8581 catcgtttat ttgcgtaaaa tcgttcgtga aggctacacc atcgaacacg gtgcgccgcc
     8641 aaaactgcaa atgaagcagg aaacgcctgt cgataaagaa ccagaagaat cgttaaatga
     8701 tgaagaagcg ctgcaagtat atttagagag catcacgcct tttcaacttt tggtagacat
     8761 ttcagacggg gcagttcccg ctgaaaccga tttgcgcgtt gtagaagaag tcatgaacca
     8821 gcaaaattta ccagttcctg tgatgaatgt gctgattgag tacgtgttac tccggcttga
     8881 ccggaagctt tctaaaaatt acatgatgac gattgctgct cactggaaac gaaaaaatgt
     8941 aaaaacagca aaagaagcaa tggatctagc gtggcaagag cacgagaaat acaaacgact
     9001 tcaagaagaa ccagccacac caaaaacgaa taattacaac cgaaattatc aaaaaacaac
     9061 gcgaaaagaa attttgccgg attggtttga taaggagcaa gttgctccag ccgaaaataa
     9121 aatgacagat aaagaaaaac aaacactcga agaacaagtt cgtgaaatta aagaacgact
     9181 aaataaaagg taggtgaaga agatggataa catcgaaaga acattaggac agctttttga
     9241 aggccgcgac tttgaaaaag aataccaagg tttaaaacaa caagttctcc attatcaacc
     9301 aattcaagac tttttcaaag agcacaaaga agaggttacc gagcaattag ttaatcaaaa
     9361 tttgtctaat ttatatgaat ttatgacgca acacaaaaaa ttcacggaac aggaagaaac
     9421 tataatgcct ggttatgcac caaaacttgt tcttaatggg gaattcatca ctgtcaccta
     9481 ctatccgacg aaagagaaaa tagaagaaga taaacgccgt gcagttgagc gaagaattcg
     9541 ttctctttat atgcctaagc aagtagtgga cgcgaactta gcggactttt ataccgatga
     9601 agaatcgcgt caattagcgc ttgtggaagc atatcaattt ttaaataatt atcctccgaa
     9661 aagtggggaa cgtgtgaagg gcttatttat tcatggtagc tttgggactg ggaaatccta
     9721 tttgttaggg gcccttgcga aagaacttgc tttaaaaggt atttcaacta cacttgttta
     9781 tttacccgag ttcatgcgcg aagtgaaaca gtctatttct gacaatacag tcggtgaaaa
     9841 aattcaattt gcgaaagaaa cagaagtatt gatgctcgat gatattggcg cagaatcgat
     9901 gaccgcttgg acgcgagatg aagtgttggg tgcgattttg caattccgga tgcaagagga
     9961 attaccaact ttcttctcat caaattacaa catggatcaa ctagaaaatc atttaatgtt
    10021 tgcccaaaat ggtacggaag aaaaactaaa agctcgccga atcatggaac gggtgcgcta
    10081 tttgtcgaaa gaggttaact tagaagggaa aaatcgccgt ttctaaaaag tacttgcaaa
    10141 tatgtttaat cgggcttata atttgaagta atataaaaca aagtgatgaa aaggacaacc
    10201 gatttaacgg aaaattttag agaggaaggg ctagctggga accttctatt ggaacttaaa
    10261 tttggaccac cttggaactt ctattaggaa cgtgtttaac tagtaataat agacggatcg
    10321 ctccgttata agcgacaaga gtgaagtagt tatttttagc tatttctgaa tcttgggtgg
    10381 aaccacgagc ataaactcgt cccttgacaa caggagggat gggtttttta ttttgccctc
    10441 ctaaccacac taaaaaaaga aaaggagaga ttagtatgaa aatcacattt ccagacggtg
    10501 cagtaaaaga atttgagcca ggcgtttcaa cagcagatat tgctgcttct atcagcccag
    10561 ggctaaaaaa gaaagcactc gcaggtaaat taaacgggga gttacttgat ttagtaacac
    10621 caatccacga agacggagca atcgaaatcg taacaccaga ccatgaagat gcgcttggta
    10681 ttttgcgtca cagtacagct catttaatgg ctcaagcatt gaaacgcctt tatccagatg
    10741 tgaaatttgg tgttggccca gcgattgaat ctggtttcta ttatgatatt gatacagagg
    10801 cagttattag cgatgaatct cttgttgaaa ttgaaaaaga aatgcaaaaa attgtgcgtg
    10861 aaaatgttcc aattgagcgc gaagttgttt ctcgcgaaga agcaattaaa cgtttcaaag
    10921 caattggaga tcaatataaa ttagaactta tcgaagcaat cccagaagat gaaacagtga
    10981 caatttatac acaaggtgaa tttttcgacc tttgtcgcgg agtccatgtt ccttctactg
    11041 gtaaaattca agtgttcaaa ctacttagcg tggctggtgc atactggcgt ggcgatagta
    11101 acaacaaaat gctacaacgc atttacggca cagctttctt cgataaaaat ggcttaaaag
    11161 aatttatcca aatgcaaaaa gaagcgaaag aacgtgatca tcgtaaacta ggtaaagaac
    11221 tagatttatt tgcaaatagt attgaagttg gtcaaggttt accactttgg ttgccaaaag
    11281 gtgcgactat ccgacgcgtt atcgaacgat acattgtgga taaagaagaa cgccttggtt
    11341 acaatcacgt ttacactccg attatggcta atgttgagct ttataaaaca agcggccact
    11401 gggatcatta ccatgaagac atgttcccaa caatgaaaat ggacaacgaa gaactagttt
    11461 tacgtccaat gaactgcccg catcacatga tgatttataa aaatgatatc catagttacc
    11521 gtgaactacc aatccgtatt gccgagcttg gtatgatgca ccgttatgaa atgagtgggg
    11581 cgctttcagg acttcaacgt gttcgtggaa tgactttaaa tgatgcacac gtatttgttc
    11641 gccctgacca aatcaaagat gagttcaaac gggttgtaga gctaatttta gaagtatata
    11701 aagactttga tattaaagat tactccttcc gcctaagcta ccgtgatccg aaaaatactg
    11761 aaaaatattt tgacgatgat gctatgtggg aaaaagcgca agccatgctt aaatccgcca
    11821 tggacgaaat ggaaatggat tactttgaag cagaaggtga agctgcattt tacggtccaa
    11881 aactagatgt tcaagtgaaa actgcaatag gaaaagaaga aacactttcc actgtacaac
    11941 ttgacttctt acttccagaa cgctttgact taacttacat tggcgaagat ggcgaaaaac
    12001 atcgtccagt tgtcattcac cgtggagttg tatcgacaat ggaacgtttt gtcgcatatc
    12061 taatcgaaga atacaaaggt gctttcccaa cttggttagc tccagtacaa atggaactta
    12121 ttccagttaa cgcagatgcg catttagatt atgcaaaagg tgtacaagat aaattacaac
    12181 gcgctggact tcgtgctgaa gtggatgatc gtaatgaaaa attaggctat aaaatccgtg
    12241 aagcacaaac aaagaaaatt ccttatgcct tagtattagg cgaccaagaa gtagaggctg
    12301 gttctgttaa tgttcgtcgt tacggctcta aagactctga aacaatggat ttagatgcat
    12361 ttatcgcaca ggttgttgct gaagtaagca aatattaatc acgaaaatac tgtctcttaa
    12421 agggggcagt attttttcat ggtgcttttt tcctcttt
//
LOCUS       DASEAA010000077        12362 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.077, whole genome shotgun sequence.
ACCESSION   DASEAA010000077 DASEAA010000000
VERSION     DASEAA010000077.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12362
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.077"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(113..931)
                     /locus_tag="U0342_001715"
     CDS             complement(113..931)
                     /locus_tag="U0342_001715"
                     /EC_number="2.4.2.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="purine-nucleoside phosphorylase"
                     /protein_id="HEM2423060.1"
                     /translation="MSLEKVNEAVAKIRESYNGTPKIGLILGSGLGVLADEVNNPTKL
                     SYSEIPHFPVSTVEGHAGQFVFGELENKEVVAMQGRFHFYEGYSMQDVTFPVRVMKEL
                     GVEVLVVTNAAGGVNELYSAGDLMLISDHINFTGTNPLIGPNDEHFGPRFPDMSEAYN
                     LALRVDARLIAQELNLTIREGVYAGFSGPTYETPAEIQMMRTLGADAVGMSTVPEVII
                     ANHAGLRVLGISCITNMAAGILDQPLSHTEVIETTDQVRSTFLQYVKAIVAKIS"
     gene            complement(950..2134)
                     /gene="deoB"
                     /locus_tag="U0342_001716"
     CDS             complement(950..2134)
                     /gene="deoB"
                     /locus_tag="U0342_001716"
                     /EC_number="5.4.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphopentomutase"
                     /protein_id="HEM2423061.1"
                     /translation="MPDKFKRVHVVVMDSVGIGEAPDAAKFGDFDVDTFGHIAKHVGG
                     LKMPEMGKLGLSNIREIDGIKKAEKPLAYYTKMQEASNGKDTMTGHWEIMGLYIDTPF
                     RVFPDGFPDDLINQIEEKTGRKVIGNKPASGTEIMAELGEEHVKTGALIVYTSADSVL
                     QIAAHEDVVPLEELYEICEFCRKITLDDPYMLGRIIARPFVGEPGAFVRTPNRHDYAL
                     KPFKPTVMDALKDGGKDVIAIGKISDIFDGEGVTESIRTKSNMDGMDQFIAVLDKDFN
                     GMSFLNLVDFDALFGHRRDPQGYADALVDFDGRLVEVMEKLTDDDLLIITADHGNDPT
                     YSGTDHTREFVPLLVYSPRFKNGGSELELRKTFADLGATVADNFEVKMPEYGTSFLKD
                     LK"
     gene            complement(2163..3056)
                     /gene="xerD"
                     /locus_tag="U0342_001717"
     CDS             complement(2163..3056)
                     /gene="xerD"
                     /locus_tag="U0342_001717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific tyrosine recombinase XerD"
                     /protein_id="HEM2423062.1"
                     /translation="MNDLIEDFLHFLIVERGLSANTIKAYERDLRYFVSYMDVAKGLT
                     DPNTLERSDIVGFMAFARQEGKSARSVARYIASLRSFFHYLMHDGKMSHDPMIQIETP
                     KQAQGLPKVLNLDDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLH
                     LHMGFIQTIGKGDKERIIPLGKTATTVLEKYLEEARPKLRRPKYRNDFVFLNHHGQGL
                     TRQGFWKILKGIAKESGIEKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQ
                     IYTHVTKLRLKDVYKQFHPRA"
     gene            complement(3211..3663)
                     /gene="fur"
                     /locus_tag="U0342_001718"
     CDS             complement(3211..3663)
                     /gene="fur"
                     /locus_tag="U0342_001718"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferric iron uptake transcriptional regulator"
                     /protein_id="HEM2423063.1"
                     /translation="MEGRIGRIKAQLHDASYKLTPQREATVRVLLENEKDHLSAEEVF
                     LRVKDIAPDTGLATVYRTLELLTELRVVDKINFGDGVSRYDLRQEGAKHFHHHLVCLE
                     CGSVEEIQEDLLEDVEKIVESKWNFLVKDHRLTFQGICTDCRQKSKKE"
     gene            complement(3905..4927)
                     /locus_tag="U0342_001719"
     CDS             complement(3905..4927)
                     /locus_tag="U0342_001719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2423064.1"
                     /translation="MYMTTAEKRKKSRRVWTLIILSVLIFCTFTYSVNAGYSKLPFLE
                     VIKSFFGMADAGTQLIVTEFRLPRIVIALLVGAGLAVSGTILQGISGNGLADPGILGI
                     NNGAGLAVMLYISFFPSTMDVPVLFMPFIGFVGAILTAFVVYGLSYSRSEGLLPNRLL
                     LTGIAVAAAIAALITLLTVRLDPQNYQRYAEWMAGNIWASSWQYVYALLPWLIVLGAI
                     AFMKVKTLDVLSFGDQVATGLGVRVEREKFVLLIVAVGLAAACVSVSGGIAFIGLIGP
                     HIARKLVGSAHRWVMVTAALSGGLLLLLADTIGRLIIQPSEIFAGIVVAIIGAPYFLF
                     LLAKAK"
     gene            complement(4927..5952)
                     /locus_tag="U0342_001720"
     CDS             complement(4927..5952)
                     /locus_tag="U0342_001720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2423065.1"
                     /translation="MDKSKQIKMNTRPTVAKFILSGGILLLLILALFGIAVGAADINL
                     STVWDALFHYNSSDTQHQIIRSLRVPRVVADMAIGAAFAVAGAIMQGITRNPLADSGL
                     LGLNAGSTFMVAVCFAFMPWLSYNSLILFSFVGAAIGAFLVFGVSSLAGSAMSPTRLV
                     LAGAAVSSLLTALSEGLAIYFQLSQDLAFWYAGGVAGVKWSQLAAIWPWLLGALIAAI
                     LLSRSITILSLGDDIAVGLGEKTTFVKIASMVVVLILAGLAVSVVGPVGFIGLIVPHL
                     VRFLVGVDYRWIIPCSAVVGAFLTLAADIVARTINPPYETPISVIFALIGVPFFLYVA
                     RKERRNL"
     gene            complement(6054..6995)
                     /locus_tag="U0342_001721"
     CDS             complement(6054..6995)
                     /locus_tag="U0342_001721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-hydroxamate ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2423066.1"
                     /translation="MKKGIILLVSMLLIAVVLTACGDNKSAGKEKVEMRTYTMANGKK
                     VEIPAHPKRIVASEYLGNIVLLGMKPVGARAKQMENPFLKGRVDGIADIGDPVSAEKV
                     AELKPDLIIVSNDDEFEAMSKIAPTVLIPYATSKNVEEDVRQIADLVGEKKAGEAWLD
                     KFHQKAKESRAKLAGKLDPNETVGIYEVQDKDFYVMGQNMGRGGQAIYNALQLKAPAK
                     IQKDVLDGQDWQKISLEVLPEFAADRMFVTSTSSGSAKDGEKTLKDLTNSPIWKNLPT
                     FKAGNVYQMDFDTMFYYDPLAVEGQLDIIVEKLLASN"
     gene            7160..7984
                     /locus_tag="U0342_001722"
     CDS             7160..7984
                     /locus_tag="U0342_001722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423067.1"
                     /translation="MKDLHTDNLQISYDKRIIVDGLDIAIPANKITALVGANGSGKST
                     ILKTMSRLMKPSKGAVYLDGKTIHSQPTRDVAKQLAILPQNPSAPDGLTVFELISYGR
                     SPHQSSFKSITAKDREIIFWSLRVTNLMELADRPIDSLSGGQRQRAWIAMALAQETDV
                     LFLDEPTTFLDMTHQLDVLNLLKQLNQSENRTIVMVVHDLNHASRYAHHMIAIKEGKV
                     IAEGTPTNVMTEQTLEDVFNIKADILIDPRSGVPLCLPYETCNGCEIVKELDSSAK"
     gene            7974..8972
                     /locus_tag="U0342_001723"
     CDS             7974..8972
                     /locus_tag="U0342_001723"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2423068.1"
                     /translation="MPNEVYDVTIIGGGPIGLFSAFYSGLRSMKTKIIDAEPAVGGKV
                     RYFFPEKIIRDIGGIPAITGENLVANLKQQAETFHPTIVCSERVVDVTKLSDGTFQLT
                     SHNGSIHFSKTIVIATGSGTFEVNKLEALHAEDFPFAIHYDVKNIEQFRDKVVVVSGG
                     GNSAIDWAQTLEPIAKQVHLIYRGEDFKAHEESVRELQNSRVEIHIHHEINELIGTNN
                     QLTKINVCCNKTQATKTIQTDALFINHGVKVDLGTMAEWGFEQADFGIVVDDEMKTTV
                     PGIFACGDSATYPRKIRIIAAGLHEGPIAINSAKKYLEPTAADEAMISTHHESFIG"
     gene            complement(8988..9608)
                     /locus_tag="U0342_001724"
     CDS             complement(8988..9608)
                     /locus_tag="U0342_001724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2423069.1"
                     /translation="MDEKRLKILEVAMGEFTEKGYQAASTNKICAKAGVSKGLIFHYF
                     GSKEKLYIAAVSYAVDFATKEVRLEGEHWGDFVEMAIWSTKMKLDFNRKYPAVFGLIM
                     QAYGNPPVALKDKLEGFFDKAIERSEAQMNQVLSEMKLKKDVNMDAARKVMAALFKHI
                     TEISTVYLQSHPNATMEDFVPLAKDFTEMMRIVEFGICEEKKDLGE"
     gene            complement(9608..10423)
                     /locus_tag="U0342_001725"
     CDS             complement(9608..10423)
                     /locus_tag="U0342_001725"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423070.1"
                     /translation="MNILHIEWKTRIKSLVVWAVVVIVILGVFMAFFPSMQSSGMQDL
                     VNTKMNALPQDMMKILHMDSMADLTNIDAYFAYVFQYIFIAACVYAALIGAQALIKEE
                     TDGTIEFLYAQPITRSSLVFWKMIGNLLSFVAFWVITFVASVALVLFLKPSGVDGGNL
                     VMELVRVFSSELLVAAVFMSAGFMVSSVLRSAKQASPVALALVFLTYILGIMAGLNDK
                     VDFFQYFSPINYAIPSEIMDKGITGTNALISCGVIVVMVAMTFVLYKKKDLKV"
     gene            complement(10420..11307)
                     /locus_tag="U0342_001726"
     CDS             complement(10420..11307)
                     /locus_tag="U0342_001726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423071.1"
                     /translation="MEAIKVESLTKNYHKKRAIENVNLSVNEGELYGFIGPNGAGKST
                     TIKVLLNFIYATSGSATVLGKDVVKDSAEIKKMVGYVPSEVRYYPQMTANDIIHYAAK
                     FHHIENATQKMNKYYEMFSIDPKKRFGEMSLGNKKKVAIVAGLITEPELFILDEPTNG
                     LDPLMQHYLFKEMTERNKEGMTIFLSSHNLREVQEYCTRAAFIRNGNIIAVEDIANQQ
                     MTGKVIALKGTNLPLEKLTNAGARIIEKEAGKARLIFDDDIKTILPLLQEKEITDLTI
                     TNQELEDKFMTLYEGGEIK"
     gene            complement(11781..12338)
                     /locus_tag="U0342_001727"
     CDS             complement(11781..12338)
                     /locus_tag="U0342_001727"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2423072.1"
                     /translation="MDSLEEKTLHTEKIFSGNIIELQVDDVELPNGEKGKREIVKHPG
                     GVAIIPFSADGRMYLVEQFRKPLEKNIIEIPAGKMEPGEDPLVTAKRELEEETGFQSD
                     DLTYLTSFYTSPGFASELLYIYVARDLRKMEHPLAQDADEFINLVKVTLEEAEQLIAQ
                     QCIHDAKTMYAIQYWKMQLLIEENE"
BASE COUNT         3797 a         2866 c         1980 g         3719 t
ORIGIN      
        1 cgacaataac tatctgaaaa tattatcaaa tacgtaaaaa actcagccca aatctattat
       61 ctccttgctt cagaaaataa caaatttgga ctgagattag ctaccaatta ttttaagaaa
      121 ttttagcaac aatggctttt acatattgta aaaacgtgct gcgaacttga tctgttgttt
      181 caataacttc cgtatgagaa agtggttgat ccagaattcc ggctgccata ttggtaatac
      241 aagaaatacc tagcactcgt aatccagcgt ggttcgcaat gattacttcc ggtacagtgg
      301 acatcccaac tgcatctgca ccaagtgtgc gcatcatttg aatttcagca ggtgtttcat
      361 aagttggacc gctaaatcca gcataaacac cttcacggat agtcaaatta agttcttgag
      421 caataagtct agcatccaca cgtagagcta aattatacgc ctcggacata tctgggaaac
      481 gcggtccaaa atgctcatca tttggtccaa taagcgggtt cgttccagta aagttaatgt
      541 gatcagaaat caacattaag tctccagcag aatataattc atttacgcca cctgccgcat
      601 tcgtcacaac aagcacttct acaccaagct ctttcatcac acgaactggg aaagtaacat
      661 cttgcattga atagccttca taaaagtgga aacgtccttg cattgcaaca acttctttat
      721 tttccaactc accaaaaaca aattggccag catgtccttc tactgtcgaa acaggaaaat
      781 gtgggatttc gctataagaa agttttgtcg gattgtttac ttcatccgca agcacaccta
      841 aacctgaacc aagaatcaaa ccaatttttg gtgtaccatt gtaactttct ctaattttcg
      901 caactgcttc atttactttt tctaaactca tttttgttcc tcccttttcc tatttcaagt
      961 cttttaagaa acttgttcca tattcaggca ttttcacttc aaaattatcc gcaactgttg
     1021 cgccgagatc ggcaaatgtt ttgcgtaatt ctaattctga accaccattt ttgaagcgtg
     1081 gtgagtatac aagtaatggt acaaactcac gtgtgtggtc tgtgccagag tatgttgggt
     1141 catttccgtg atcagctgta ataattaata gatcatcatc tgttaatttt tccattactt
     1201 ctactaaacg accgtcaaaa tcaacgagcg catctgcata accttgtgga tcacgacgat
     1261 gtccgaaaag tgcatcaaag tctactaaat tcaagaaact cataccgtta aaatctttat
     1321 ctaacacagc gataaattga tccattccgt ccatatttga tttcgtacgg atagattccg
     1381 taacaccttc accatcaaaa atatcagaaa ttttaccaat ggcaatcacg tctttaccgc
     1441 catcttttaa agcatccatt acagttggtt taaatggttt tagcgcatag tcatggcgat
     1501 ttggcgttct aacaaacgca cctggttcgc cgacaaatgg acgagcgata atacgaccaa
     1561 gcatgtacgg gtcatctagt gtaattttac ggcagaattc acagatttca tataattctt
     1621 ccaaaggtac gacatcttca tgtgctgcaa tttgtaaaac tgagtcagct gatgtgtaaa
     1681 caataagcgc acctgttttc acatgctctt ctccaagttc agccataatt tctgttccgc
     1741 tcgctggttt atttccaatt actttacgtc ctgttttttc ttcaatttgg ttgattaaat
     1801 catccggaaa tccatctggg aatacgcgga aaggcgtgtc aatgtatagg cccatgattt
     1861 cccagtgacc cgtcattgta tctttaccgt tcgaagcttc ttgcattttt gtatagtaag
     1921 caagtggttt ttctgctttt ttaattccgt ctatttctcg aatattcgat agacctaatt
     1981 tgcccatttc aggcattttt agtccgccga cgtgtttggc aatatgtcca aatgtatcta
     2041 catcaaaatc accaaattta gcagcatctg gtgcttctcc aataccaact gaatccatta
     2101 caactacatg tactcgttta aatttatctg gcatatttac tcatcctttt caactatatt
     2161 ttttaagcgc gcgggtggaa ttgtttgtag acatctttca accgcagctt tgttacgtgt
     2221 gtataaattt gtgtagtgga gatatcggcg tgaccaagga gttcttgaac cgaccttaaa
     2281 tcagccccat tttcaagtaa atgagtggca aatgaatgac gcaaggtgtg cggtgtaatc
     2341 ggcttttcaa tgcctgattc tttcgcaata ccttttaaaa ttttccagaa accttgtctt
     2401 gtgagtcctt ggccgtgatg atttaaaaac acaaaatcat ttcggtattt cggtctacga
     2461 agttttggtc tcgcttcctc taaatacttc tctaacacag ttgttgccgt ttttccaagc
     2521 gggataattc tttctttatc tcctttacca atcgtttgaa taaaacccat atgaagatgt
     2581 aaatcgtcca ttttcaggct gacaagttcc gttacacgaa gccctgtcgc atataaaatt
     2641 tccatcattg cttggtccct taatccaagt ggtgtactcg tatcagagga actaagtaac
     2701 ttctcgacat catcaaggtt caaaactttt ggtaatccct gggcttgttt cggcgtttca
     2761 atttgaatca ttgggtcatg tgacattttc ccatcgtgca ttaaataatg aaagaaagat
     2821 cgcagtgaag caatatagcg cgccacactt cttgctgatt tcccttcttg tcttgcaaat
     2881 gccataaaac caactatatc gcttcgttca agtgtattcg gatctgttaa tcccttcgct
     2941 acatccatat aagaaacaaa atagcgtaaa tctcgttcat aagctttgat tgtattcgcg
     3001 gataaacctc tctctacaat taaaaaatgt aaaaaatctt ctattaaatc attcataagc
     3061 gtttcctcca caaatcctat tctaccatgt tacactccca ctgaaaacgt ttaattaata
     3121 gaaaaagact tataatactt ttcgcgcaat tcagtccatc ttttttaatc ataaaaaaaa
     3181 gtttgagata aattatccca aactcttgta ttattctttt ttagattttt gtctgcaatc
     3241 tgtgcaaatc ccttggaaag tcagacgatg gtctttaaca agaaaattcc acttcgattc
     3301 gacgattttc tccacatctt ctaataaatc ttcttgaatt tcttctacag aaccacactc
     3361 taaacatact aaatgatgat ggaaatgttt ggcgccttct tgtctcaagt cataccgaga
     3421 aacaccgtca ccaaaattaa ttttatcaac cacgcgtaat tcggttaaaa gttccaacgt
     3481 tctataaacg gttgcaaggc cagtgtcagg tgcaatatct ttcacacgca agaaaacttc
     3541 ctcggcactt aaatgatctt tttcattttc cagtaaaacg cgaacagtag cttctcgctg
     3601 tggggttaat ttataactag catcatgaag ttgtgcttta atgcgtccaa tacgaccttc
     3661 cattatggtt cctcccttgg ttgctacaac aagttgtctt tctaaattat catcattatc
     3721 atttaacaat aaatacagtt tataataatt ataaataaaa tgcaagttag gaattcactt
     3781 tttttagtaa aaatggcacg tagtcaattc ctattgctta tgtttactaa gatatcataa
     3841 aagcaatagg ctgtctacaa tgattatcaa ttactaatta atttctcgtt atcaataata
     3901 attattattt agcttttgca agcaagaaca agaaataagg tgcaccgata attgccacaa
     3961 cgataccagc aaatatttcg gatggttgaa taatcaatcg tccaatcgta tccgcaagta
     4021 ataatagtag ccctccagaa agtgccgccg ttaccatcac ccagcgatgt gcggatccaa
     4081 ctaattttct agcaatatgc ggaccaatta gaccaataaa tgcaataccg ccactaacgg
     4141 atacacaagc agctgccaaa ccaactgcta ctattaaaag cacaaatttt tctcgctcaa
     4201 cccgaacgcc gagtccggtt gccacttggt ctccaaaaga gagcacatcc aacgtcttta
     4261 ctttcataaa agcaattgca cctaaaacaa taagccatgg caaaagagca taaacatatt
     4321 gccagcttga agcccaaata tttcctgcca tccattcagc atagcgttga taattttgcg
     4381 gatcaagccg aaccgtaagc agtgtgataa gtgccgcaat cgccgccgca acagcaatcc
     4441 ccgtaagaag caatcgatta ggcaacaatc cttcgcttct actataagaa agtccgtaaa
     4501 caacaaacgc agttaaaatt gccccgacaa atccaataaa tggcataaat aaaaccggaa
     4561 cgtccatcgt ggaaggaaaa aaggaaatat aaagcataac cgcaagtccc gcgccattat
     4621 taatcccaag aattcccgga tcagctaatc cgtttccaga aatcccttgt aggattgttc
     4681 ctgaaaccgc aagccctgca ccaactaata gcgcaataac tatccgtggc aaacgaaact
     4741 ccgtcacaat aagttgtgtt cccgcgtccg ccattccaaa aaacgactta atcacttcca
     4801 aaaatggcaa tttcgaataa ccagcattga cactatatgt aaatgtacaa aaaattaaca
     4861 cgcttaaaat aattaacgtc caaactcgcc gcgatttttt tcgtttttct gccgttgtca
     4921 tatacattat aagttcctcc tttctttacg tgctacatat aagaagaaag gaaccccgat
     4981 taatgcaaaa ataacactga ttggcgtttc atatggcgga ttgattgttc tcgccacaat
     5041 atccgccgct aatgtcagaa aggctccaac aaccgccgag caagggataa tccagcgata
     5101 atctactcca actaaaaatc gtaccaaatg cggtacaatc aagccgataa acccaaccgg
     5161 accaacaacc gacacagcaa gccccgccaa aatcaacacc acaaccatcg aagcaatttt
     5221 aacaaaagta gttttttcac ctaaaccaac agcaatatca tcgcctaagc ttaaaatggt
     5281 aatcgatcta cttagcaaaa tcgccgcaat aagcgctcca agtaaccaag gccaaatcgc
     5341 cgcaagctga ctccatttca caccagcaac cccgcccgcg taccaaaagg ccaaatcctg
     5401 acttaactga aaataaatcg cgagtccttc actaagcgca gtaagcaatg aactaaccgc
     5461 cgctccagca agcactagcc tcgttggcga cattgcgctc cctgcaagag aactaacgcc
     5521 aaatactaaa aatgccccaa ttgccgcccc aacaaaagaa aataaaatga gcgaattata
     5581 actaagccaa ggcataaatg caaaacaaac tgctaccata aacgtcgatc cagcattcaa
     5641 cccaagcaag cctgaatcag caagtggatt ccgagtgatt ccttgcataa tcgctccagc
     5701 aaccgcaaaa gcagccccta tcgccatatc cgcaaccacc cgaggaacac gtaaactacg
     5761 tataatctgg tgctgcgtat ccgaactatt ataatgaaaa agtgcatccc aaaccgtact
     5821 taaattaata tcggctgcac caaccgcaat cccgaataac gctaaaatga gaagcaacaa
     5881 aatcccaccc gaaagtatga atttagcaac agtcggtctt gtattcattt ttatctgttt
     5941 tgacttatcc atctgcacat gttccttcca tctaaattat ccgctcattt taagtgataa
     6001 taattatcaa tcgcaaagaa aattatatca atatcattca ctaagcgcaa tcattagttg
     6061 gacgcaagta acttctctac aataatatcc aactgtcctt ctaccgctaa tggatcataa
     6121 taaaacatcg tgtcaaagtc catttggtaa acattccctg ctttaaacgt cggcagattt
     6181 ttccaaattg gcgagttcgt taaatctttt aatgttttct cgccgtcttt agcactccca
     6241 gaagaagtgc ttgtaacgaa cattctatcg gccgcaaatt caggtaaaac ttccagtgaa
     6301 atcttttgcc aatcttgccc atctaaaaca tctttctgta tttttgctgg tgcttttagt
     6361 tgtaaagcat tataaatcgc ttgaccacct cgccccatat tttgtcccat cacataaaaa
     6421 tctttatctt gtacttcata aatccctact gtttcattcg gatctaactt gccagccaac
     6481 ttcgctctac tttctttggc tttttgatga aacttatcta gccacgcctc tccagccttt
     6541 ttttctccaa ctaagtccgc gatttggcga acgtcttcct ccacattttt tgaagttgcg
     6601 tacggaatta acaccgttgg cgcaattttc gacattgcct caaattcgtc atcgtttgaa
     6661 acaatgatta aatcaggttt taattccgcc actttttctg ctgaaactgg atcaccaata
     6721 tctgcaatcc catccacacg ccctttcaaa aacggatttt ccatttgttt cgctctagcc
     6781 cccacaggct tcattccaag caaaacaata ttccctagat attccgaagc cacaatacgt
     6841 ttcggatgtg ctggtatttc tactttcttt ccatttgcca ttgtatatgt acgcatctcg
     6901 accttctctt ttccagccga tttgttatct ccacaagcag ttaaaaccac tgcaattaaa
     6961 agcattgaca cgagtaaaat gatacccttt ttcaattgaa cccctccagt aattgataat
     7021 aattctcaat tagtatagca actttattca caaagtgcaa atcatttcgg caaagtaacg
     7081 cttgcatctt caccataaaa actctatact taaccattga gaatgattat caccttacct
     7141 ttaaattgga gcgatgaaaa tgaaagacct tcataccgat aacttacaaa tttcatacga
     7201 caaacgaatc attgttgatg gtttagatat agccattcca gcgaataaaa taaccgcttt
     7261 agtaggtgca aatggctcag ggaaatcgac tattttaaaa acgatgtccc gcttaatgaa
     7321 acctagcaaa ggcgctgtgt atttagatgg caagacgatt catagtcagc caacgagaga
     7381 cgttgccaaa caactagcta ttttgccaca aaatccttct gcacctgatg gtttaacggt
     7441 gtttgaatta atttcttatg gacgttcccc acatcaaagt agctttaaat cgattaccgc
     7501 aaaagatcgc gaaattattt tttggtcatt gcgcgtgacg aatttaatgg agttagcgga
     7561 tcgaccaatt gatagtttat caggtggaca acgacagcgt gcatggattg ccatggcgct
     7621 tgcccaagaa acagatgtac tatttcttga tgaaccgacg acctttttag atatgacgca
     7681 ccaactagat gtacttaatt tattgaaaca attaaatcaa tcagagaacc gcacaattgt
     7741 gatggttgtt catgatttaa atcacgcatc tcgttacgct caccatatga tcgctattaa
     7801 agaagggaaa gtcatcgcag aaggaacacc aaccaatgtc atgactgaac aaactttaga
     7861 ggatgttttt aatatcaaag cagatatttt aattgatccc cgcagcggtg tccctctttg
     7921 cctcccctac gaaacttgca acggatgcga aattgtaaag gagcttgatt ccagtgccaa
     7981 atgaggttta tgatgtaacc attatcggcg gcggtcccat tggcctattc tccgcatttt
     8041 atagtgggct tcgttccatg aaaacaaaaa ttatcgatgc tgaacctgct gttggcggga
     8101 aagttcgcta cttttttcca gaaaaaatca ttcgcgatat cggtggtatt cccgccatta
     8161 ccggcgaaaa tcttgtcgca aatttaaaac aacaagcaga aacctttcat ccgactattg
     8221 tttgcagtga gcgagttgtc gatgtgacaa aactatcaga tggcactttt caattaactt
     8281 cgcataacgg ttcgattcat ttttcaaaaa cgattgtcat tgctacaggt agtggcacgt
     8341 ttgaggtcaa taaacttgaa gctctacatg ctgaagattt tccatttgca atccattatg
     8401 atgtcaaaaa tatcgagcaa ttccgcgata aagtagtagt ggtttctggt ggtggaaatt
     8461 ccgctatcga ctgggctcag acactcgaac ccattgccaa acaagtacac cttatttacc
     8521 gtggcgaaga ttttaaagca cacgaggaaa gtgtccgaga acttcaaaat tctcgcgtcg
     8581 aaatccatat ccaccatgaa atcaatgaac taatcggaac aaacaatcag ttaaccaaaa
     8641 tcaatgtttg ctgcaataaa acccaagcca cgaaaacaat tcaaacagac gcacttttca
     8701 ttaatcacgg ggtaaaagta gaccttggaa ccatggcgga atggggcttt gaacaagcag
     8761 attttggcat tgtcgtggat gacgagatga aaacgacggt tcctggtatt ttcgcttgtg
     8821 gagatagtgc gacttaccct cgaaaaatac gcattatcgc agcgggactt catgaagggc
     8881 ccatcgcgat taatagtgcg aaaaaatatt tagaaccaac tgccgcagat gaagcgatga
     8941 ttagcacgca tcacgaaagc tttattggtt aaaaaaagga tttgggctca ctcgcccaaa
     9001 tccttttttt cttcgcatat cccaaattcg acaattcgca tcatttccgt aaaatccttc
     9061 gcaagcggaa caaaatcttc catcgtcgca tttggatggc tctgcaaata aactgtacta
     9121 atctccgtaa tatgtttaaa aagagccgcc atcactttac gcgctgcatc catatttaca
     9181 tcttttttca acttcatttc acttaaaact tgattcattt gcgcctctga tcgctcaatc
     9241 gccttatcaa aaaagccctc aagtttatct ttcaatgcaa ctggcggatt tccataagct
     9301 tgcataatta agccaaacac agcaggatat ttgcgattaa aatccagttt catcttcgtt
     9361 gaccaaatcg ccatttcgac aaagtctccc caatgttccc cttccaaacg aacctccttg
     9421 gtcgcaaaat caaccgcata actaacagcc gcaatataaa gcttttcttt agaaccaaaa
     9481 tagtgaaaaa tcagcccttt ggaaacacca gcttttgcgc aaattttatt cgtactagcc
     9541 gcctgatatc ctttttccgt aaattctccc attgctactt ctaaaatttt taatcgtttt
     9601 tcatccatta tactttcaaa tcctttttct tataaagaac aaatgtcata gcaaccatca
     9661 caacaattac cccacaagaa atcagtgcat tggttcctgt aatcccttta tccataatct
     9721 cagacggaat tgcatagtta attggtgaaa aatattggaa gaaatcgacc ttatcattca
     9781 acccagccat aattcctaaa atatacgtta agaacacaag cgcaagtgca accggagaag
     9841 cttgcttagc ggaacgaagc accgatgaaa ccataaaacc agcactcata aatacagcag
     9901 ccactagcaa ctcactagaa aacactcgta caagctccat tactaagttt cctccgtcaa
     9961 ccccactcgg cttcaagaaa agaactagcg ccactgaagc tacaaatgta atcacccaaa
    10021 aagccacaaa tgacaataaa ttcccaatca ttttccaaaa aacaagacta gaccgcgtaa
    10081 ttggttgcgc atataaaaat tcaattgttc catccgtttc ttcttttatc aaggcctgcg
    10141 caccaattaa tgctgcatac acacaagctg caataaaaat atactgaaaa acatacgcaa
    10201 aataggcatc aatattcgtt aaatccgcca ttgaatccat atgcaaaatt ttcatcatat
    10261 cttgcggaag tgcattcatc ttcgtattca ctaaatcttg cattccacta ctttgcatac
    10321 tagggaagaa agccataaac acccctaaaa tcacaatcac cacaacagcc caaacaacca
    10381 gactctttat tcgcgttttc cactcaatgt gtaggatatt cacttgattt ctcccccttc
    10441 gtatagcgtc ataaatttat cttccagctc ttgattagta atcgttaaat ccgtaatttc
    10501 tttttcttgt aataatggca aaatcgtctt aatatcatca tcaaaaataa gccgcgcttt
    10561 tcccgcttcc ttttcgataa ttcttgcgcc cgcattcgtt aatttttcca gtggcaaatt
    10621 cgttcctttc agcgcgatta ctttacccgt catttgttga ttagcgatat cttccaccgc
    10681 gataatattc ccatttcgaa taaaagcagc tcttgtacaa tattcctgaa cctcacgtaa
    10741 attatgacta gaaagaaaaa tcgtcattcc ttctttattt cgctcagtca tttctttaaa
    10801 taaataatgt tgcattaacg gatcaaggcc attcgtcggt tcatccagaa taaataattc
    10861 cggctcagta ataagtccag caacaatcgc cacttttttc ttatttccaa gcgacatttc
    10921 tccaaagcgt tttttcggat caatcgaaaa catttcataa tatttattca ttttttgcgt
    10981 tgcattttca atatgatgga acttggcagc gtaatggata atatcatttg ctgtcatttg
    11041 gggataatag cgaacttcac ttggcacata accgaccatt ttcttaattt cagcagagtc
    11101 tttcaccaca tctttcccga gaaccgtcgc actcccactt gttgcgtaaa taaaattcag
    11161 taagacttta attgtcgttg atttccccgc accattcgga ccgataaaac cataaagttc
    11221 tccttcattt acagacaaat tcacattttc aattgctcgc tttttatggt aattttttgt
    11281 gagcgactcc actttaattg cttccatgtt ctctcctcca cactcaaatt gaccacttag
    11341 tcaactagag tataatccct tttgaccagg tagtcaatta agaaccataa cacaataaaa
    11401 atctgtaaga ctgtatccag taaaagtatt caaattactg ttttcatgtt agctctttca
    11461 acatgaaagg gggatgccta tgactttttt gttaggaact cctggaaagg ataacccatg
    11521 accgtttatg aagcactctc ttttgcagtc gcttttacaa ctttaatgtt gttactaaac
    11581 agtcaaaata acacaaaaaa ataaccactc ataaactttg gcgagtttag tggttatttt
    11641 tataccatat tagactagct gccaccttaa atggggctta catttgaggg tcatgttctt
    11701 gcatgactct cttttcatgt ttatgatacc acatttccat tctttatgcc aagtattccc
    11761 aaatgagttt ttcatccgat ttattcattt tcttctatta atagttgcat tttccagtac
    11821 tgtatcgcgt acattgtttt tgcgtcatga atgcattgtt gtgctattaa ttgttctgct
    11881 tcttccagcg ttactttgac taaattaata aattcatctg catcttgcgc caatggatgc
    11941 tccattttcc ggaggtcacg cgctacataa atatataaaa gttcactagc aaacccaggt
    12001 gatgtataaa aagaagtgag atacgttaaa tcatcggact gaaaaccagt ttcttcttct
    12061 agttcccgtt ttgcggtcac gagcggatct tcccctggct ccattttgcc agctggaatt
    12121 tcgataatgt ttttttcgag tggctttcgg aattgctcta ctaagtacat tcttccatct
    12181 gctgaaaaag gtataattgc cacaccaccg ggatgcttga cgatttcgcg cttgcccttt
    12241 tccccgtttg gtaactccac atcatctact tgcaattcaa taatatttcc gctaaaaatc
    12301 ttttctgtat gaagcgtttt ttcctctagt gagtccattt ctgccaccta cctctcattt
    12361 tt
//
LOCUS       DASEAA010000078        12229 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.078, whole genome shotgun sequence.
ACCESSION   DASEAA010000078 DASEAA010000000
VERSION     DASEAA010000078.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12229)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12229)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12229
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.078"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..334)
                     /gene="fxsA"
                     /locus_tag="U0342_001728"
     CDS             complement(<1..334)
                     /gene="fxsA"
                     /locus_tag="U0342_001728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465094.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein FxsA"
                     /protein_id="HEM2423073.1"
                     /translation="MRKFILYWALYGLIELIMYVWLFQVIGFWPLLFIQAASSAFGVF
                     IFKRLGGNLFRNLRDGRTVAPYLLDSLCFFIAGFLLIIPGVITTILGLLIFIPFSRKL
                     LKPKLTKWL"
     gene            complement(453..2210)
                     /gene="pyk"
                     /locus_tag="U0342_001729"
     CDS             complement(453..2210)
                     /gene="pyk"
                     /locus_tag="U0342_001729"
                     /EC_number="2.7.1.40"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465095.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate kinase"
                     /protein_id="HEM2423074.1"
                     /translation="MKKTKIVCTIGPASESVDTLVQLIEAGMNVARLNFSHGDFEEHG
                     ARIVNIREASKKTGKQVAILLDTKGPEIRTNDMVGGKLEFQTGDVVRVSMTPVEGTKE
                     KFSVTYGELYDDVEIGSSILLDDGLIGLEVIEKDEANRELVTKVLNPGVLKNKKGVNV
                     PNVSINLPGITEKDAADIRFGLEQGIDFIAASFVRRATDVLEITKILEEHNATHVQII
                     PKIENQEGVDNIDEILQVSQGLMVARGDLGVEIPAEEVPIVQKELIRKCNKLGKPVIT
                     ATQMLDSMQRNPRPTRAEASDVANAIFDGTDAIMLSGETAAGDYPVEAVKMMAKIAVR
                     TEEVLVAQDKFALKLHENTDMTEAIGQAVGHTAKNLNVQTIVAATQSGHTARMISKYR
                     PKSHIVAVTFNEHVYRGLALSWGVYPRLATPVSNTDEMFDLAVKESLASGVAKQGDLI
                     IITAGVPVTESGTTNVMKIQLIGEKVVKGQGIGSKSVIGKAIVAKSNAEALEKAEEGG
                     ILIVKTTDKEMLPAFEKSAAVVVEEGGLTSHAAVVGINLGIPVIVGAKDATSLVKDGE
                     IITVDSRQGVVYNGKTATH"
     gene            complement(2493..3452)
                     /gene="pfkA"
                     /locus_tag="U0342_001730"
     CDS             complement(2493..3452)
                     /gene="pfkA"
                     /locus_tag="U0342_001730"
                     /EC_number="2.7.1.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465096.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="6-phosphofructokinase"
                     /protein_id="HEM2423075.1"
                     /translation="MKRIAILTSGGDAPGMNAATRAVVRKAIYEGLEVYGINYGFLGL
                     VNGDIRKLELGSVGDLLHRGGTFLYSARYPEFATEEGQLKGIEQLKKHQIDGLVVIGG
                     DGSYHGAEALTKRGFPTIGIPGTIDNDISGTDFTIGFDTALNTVLDALDKIRDTATSH
                     ERTFIIEVMGRDAGDIALWSGLAGGAEAIIVPEESFNMDDVVDRLNKGRERGKKHSII
                     VVAEGVMSGNEFAKQLAEYGDYHARVTVLGHVQRGGSPTAFDRVLASRLGARSVELLL
                     ENRGGLAVGIRENRIVENDISEILKEKHTLDQKLFDLASILSI"
     gene            complement(3737..4693)
                     /locus_tag="U0342_001731"
     CDS             complement(3737..4693)
                     /locus_tag="U0342_001731"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465097.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit alpha"
                     /protein_id="HEM2423076.1"
                     /translation="MANEMEFEKPILELKSKIADLKEYNETSDVDLTNEIEKLEKRLA
                     KLESSIYSNMTAWDKFQVARHPERPTTLDYISLLFEDFMELHGDRAFGDDAAIVGGIA
                     TFHGIPVTVIGHQRGKDTKDNLHRNFGMPHPEGFRKALRLMKQADKFGRPIICFIDTK
                     GAYPGRAAEERGQSEAIARNLYEMSDMKVPIISIVIGEGGSGGALALGVGNQIFMLEN
                     AVFSVISPEGAAAILWKDASQAKKAAESMRITAGDLFELGITDGIIPEVKGGAHRDLN
                     AQAEEINKTITKSLHALMAFSEEQLIEQRYEKFKKIGVYDTL"
     gene            complement(4683..5567)
                     /locus_tag="U0342_001732"
     CDS             complement(4683..5567)
                     /locus_tag="U0342_001732"
                     /EC_number="6.4.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465098.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase carboxyltransferase
                     subunit beta"
                     /protein_id="HEM2423077.1"
                     /translation="MLGDLFTKPKKRKYATIPSDGTKADVPEGIMTKCPECKKIMYTK
                     ELQKNLMVCNYCGFHHPIGAKARIDMLVDEGSFEEIDASLTTANPLGFEDYMDRIEKD
                     KQKSGLNEAIVTGHATIDGNPLVIAVMDSRFRMASMGSVVGEKIFRAVEDADKTNKPF
                     VIFTASGGARMQEGMLSLMQMAKTSAAFKRFSNHGGLIITVMTHPTTGGVSASFASLG
                     DYNFAEPGALIGFAGRRVIEQTVREELPEDFQTSEFLLKHGQLDDCISRLDLQNKLSF
                     ILSIHVKTPEVGGEADGE"
     gene            complement(5785..9111)
                     /gene="dnaE"
                     /locus_tag="U0342_001733"
     CDS             complement(5785..9111)
                     /gene="dnaE"
                     /locus_tag="U0342_001733"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465099.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit alpha"
                     /protein_id="HEM2423078.1"
                     /translation="MGFVHLQVASAYDLLSSTASIDKLIAKAKEYHYPALAITDKNVL
                     YGVVEFYQKCLAADIKPIIGMTVTIQGYLNPINSYELILIAESTAGYHELLKIASAIQ
                     TREEGPELPQSWLRAYSSNLIAISPGAKGEIERLLMEENREGALEVYANLVEIFGKES
                     VYLSAQKENPRLFTKIETFSAEENVPVVATKNVQYIEPKDAQAKEVLTAIRDNRTVDW
                     TTLPLAGPNYFTSQEDMERDWQTEFEKRACLETGELADRCHVEIALDQHLLPRFPLNE
                     GQNASDVLRQTAFAGLKERNLLGVEYQERLEYELKVITEMGFADYFLIVWDVIRYSRE
                     AGILTGPGRGSAAGSLVSYALRITDVDPIRYNLLFERFLNPERITMPDIDLDFPDNRR
                     DEVISYVVSKYGEAHVAQIGTFGTLAAKAAIRDTARSFGLNSVLLSEWSKLIPSQLGI
                     TLQKALQESPRLENHIKSSKENEMIWEVACQLEGLPRHISTHAAGIVISDKPLVEQVA
                     LQLGSGDARLTQFAMGELEKIGLLKMDFLGLRNLSLLDRVLKSVNYTRETPLTLADIS
                     LEDKKTLKLFQTGDTTGVFQFESDGIRRVLRKLKPTSFEDVVAVDALYRPGPMEQIDT
                     FIARKHGKEKIQYPHPDLAPILEVTYGVIVYQEQIIQVANQMAGFSLGEADLLRRAVS
                     KKKADVLNEERIHFVEGAKSRGYSDASANQVYDMIVQFANYGFNRSHAAAYSKIAFQL
                     AYLKAHFPAAFMSSLLSSVFGNDDKISQYITEAKNYGISMLAPSINHSNYYFQVENES
                     SIRYSFRVIRKVPTKFILEIINERKKAPFRDFFDFCERMPHKMLSETVLEALVFSGCF
                     DEFGEDRATILATIDAVLQYISLLGEDSKGMNLFAEDDDFLKKMKPRYRKTAPISIDE
                     KLEKEKLYTGQYVSAHPVSYYQNKLQNLAITRLANLSSGKNYQVAAYVHEVKSIRTKK
                     GETMCFLTISDDSKELSAVMFPESYRKFASFAQKGEILFLQVKADTRNGELQLIINKA
                     EDLKEIKAPVRLFLKLTEPQQMEQIKPVLTRYKGDSKVIVHQAITKQTAELKNIQVTP
                     SNELQEALEELLGKENVVIK"
     gene            complement(9233..10168)
                     /locus_tag="U0342_001734"
     CDS             complement(9233..10168)
                     /locus_tag="U0342_001734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465100.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional oligoribonuclease/PAP phosphatase
                     NrnA"
                     /protein_id="HEM2423079.1"
                     /translation="MKSEILQQIKQYETIILHRHVRPDPDAYGSQMGLAEIIRASFPE
                     KKVYSVGNDEKSLQFLGIVDEITDEIYKDALVIVCDTANQERISDGRFNLGKALIKID
                     HHPNDDAYGDLLWVDTTASSCSEMIVAFWEMFSDELILNETAARLLYAGIVGDTGRFL
                     YPSTTEETLRLSAHLVTFPFDRPALYRELYELPKNTVKLSGYILQNFVMDENGAATVY
                     LSDTLLNEFEVDPRDASALVSCIENVEGIKAWIMFIQEGPVFRARLRSKGPVINELAK
                     EYGGGGHPLASGATLHNEEEIKEMTAKLQRICADK"
     gene            complement(10189..11502)
                     /locus_tag="U0342_001735"
     CDS             complement(10189..11502)
                     /locus_tag="U0342_001735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465101.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM2423080.1"
                     /translation="MATKHEQILKYIENLAVGEKISVRKIAKNLSVSEGTAYRAIKDA
                     EIIGFVSTIKRVGTLRIERKQKDSIEKLTFAEIVNMIDGQVLGGRAGLYKSLNKFVIG
                     AMTVEAMERYTDAGNLLIVGNRVSAHELALKRGAAVLITGGFDTDDEVKRLADEKELP
                     ILSTSYDTFTVATMINRAIYDQLIKKEVVFVEDILTPLETTAFLSTSDKVEDWHKMEE
                     ATGHSRFPVVNRAMRLTGMVTSKDILEKNPSISIERVMTKNPLTVGPKMSVASVAHMM
                     IWESIEVIPVVKDDLTLIGIVSRQDILKSMQMIQKQPQVGETIDDTIANQLSEKADTG
                     EEADYEFKVSPQMTNSLGTLSYGVFTQVVCDVVQQKLFSMKKRNVAIENVTMYFLKPV
                     QMDATIIIKPRILEMGRKAGKLDVELYLEGILTGKAIVACQMMER"
     gene            complement(11528..12214)
                     /locus_tag="U0342_001736"
     CDS             complement(11528..12214)
                     /locus_tag="U0342_001736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465102.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-dependent hydrolase"
                     /protein_id="HEM2423081.1"
                     /translation="MKISFHGQSCIKIITGDTTILVDPFISGNEKCDLKAEEQMPDFI
                     VLSHGHDDHVGDTVEIAKNSGATVICNADLASFLAVEDGLENIAPMHIGGKRQFSFGQ
                     VKLTQAFHGSQTVRDGRIVNLGFPTGIVFTIEDKNIYFAGDTGLFSDMKLIGELNPLD
                     VAFLPIGDNFTMGPEDAAIAARFLQAKLVVPMHYNTFPLIAQDPHKFVASLDEGITGK
                     VLEIGEGIEI"
BASE COUNT         3540 a         2697 c         2065 g         3927 t
ORIGIN      
        1 caagccattt tgttaatttt ggttttaata gtttgcggga aaatggaata aaaatgagta
       61 gtccaagtat agttgttata acacctggaa taattaataa aaacccggcg ataaaaaagc
      121 acagactatc caacaaatac ggggctacag tgcggccatc tcgtaaattt cggaaaaggt
      181 tgccaccaag ccgtttgaaa ataaaaacac caaaggcact tgaagctgcc tgaataaaaa
      241 gaagtggcca aaagccaatt acttggaata accaaacgta cataatcaat tctattaagc
      301 catataaagc ccaataaaga ataaattttc tcataaaatc aactccaata cttactctct
      361 attataacct attttggcgt aatcgaaaaa caatacaggc gtgcgcataa aaaaagcgtc
      421 ccgcatgcgg gacgctttta gaaagttaac tattaatgtg ttgctgtttt gccgttatat
      481 acaacacctt gacgagaatc aacagtaatg atttcaccgt cttttacaag agatgttgca
      541 tctttagcgc caacgatgac aggaatgcct aggttgattc ctacaactgc tgcgtggcta
      601 gtcaagccgc cttcttccac aacaactgct gcacttttct cgaatgcagg tagcatttct
      661 ttatccgttg ttttaacgat taagattccg ccttcttctg ctttttcaag tgcttctgca
      721 ttggatttag caacgattgc tttaccgata acagatttgc tgccaatacc ttggccttta
      781 acaacttttt caccaattaa ttggattttc attacgtttg ttgttccact ttcagtaact
      841 ggaacaccag cagtgatgat aattaagtcg ccttgttttg caacgccaga agcaagagat
      901 tctttcactg caaggtcgaa catttcatct gtgttgctaa ctggagtagc taggcgagga
      961 taaacacccc atgaaagtgc taaaccgcgg tatacatgct cgttgaatgt tacagcaacg
     1021 atatgagatt taggacggta tttagagatc atacgcgctg tgtgaccact ttgagtcgca
     1081 gcaacaatag tttgtacatt taggtttttc gcagtatggc caactgcttg accgatagct
     1141 tctgtcatat ccgtattttc gtgaagttta agtgcaaatt tatcttgagc aactagtact
     1201 tcttctgtac gaacagcgat tttcgccatc attttaactg cttctactgg ataatcccca
     1261 gcagctgttt caccggacaa cataattgca tctgttccat caaaaatcgc attcgctacg
     1321 tcacttgctt cagcgcgagt tggacgtggg ttacgttgca tggaatcaag catttgtgtt
     1381 gcagtaataa caggtttacc aagtttatta cattttctga taagttcttt ttgtacaatc
     1441 ggaacttctt cagctggaat ttcaacacca aggtccccac gagcaaccat taggccttga
     1501 gatacttgta agatttcgtc gatattatca acgccttctt ggttttcgat tttaggaatg
     1561 atttgtacgt gagttgcatt gtgctcttct agaattttag tgatttcaag aacatctgta
     1621 gcacgacgta cgaaagatgc agcgataaaa tcaatacctt gttctaaacc aaagcggata
     1681 tcagcagcat ctttttctgt gattcctggt aggttgatag aaacgtttgg tacgttaaca
     1741 ccttttttat ttttaagtac acctgggtta agtacttttg ttactagttc gcgattagct
     1801 tcgtcttttt cgattacttc aagaccgatt aagccgtcat caagtaaaat ggaagaacca
     1861 atttctacat catcgtaaag ttcgccgtaa gtcacggaga atttttcttt tgttccttca
     1921 acaggagtca tagaaacacg tacaacatca cctgtttgga attctaattt tccgccgacc
     1981 atgtcgtttg tacggatttc tggacctttt gtatcaagta agatagccac ttgtttacca
     2041 gtttttttcg atgcttcgcg gatatttaca atacgcgcac cgtgctcttc aaaatctccg
     2101 tgagagaaat taagacgtgc aacgttcatt cctgcttcga tcaactgaac taatgtgtca
     2161 actgactcac ttgcaggacc aattgtacaa acaattttcg tttttttcat gttattactc
     2221 ctcctagaac ttagctattc attcgtattt attataaaca tatcttccac attttaccag
     2281 taacaacctt gtaaaacaag taagtttgtg aataaaatcg caatcaacct gcatggtaac
     2341 gataacaaga aaacgttttc cagattgtta cagcatgctt aatgaacgat ttgcatttct
     2401 ttaccctcaa agtttatttt taatacgtta ctaaaatttt tcacaaagaa aggctaccat
     2461 gctttgtcat ggcagccagc tcttcagccg ttttaaatcg acaaaataga tgctagatca
     2521 aataattttt gatcaagtgt gtgtttttct ttcaaaattt cactaatgtc attttcgaca
     2581 attctatttt cacggattcc aacagctaat cctccgcggt tttctaacaa taattctact
     2641 gaacgtgcac caagacggct tgcaagtaca cggtcaaatg cagttgggct accaccacgt
     2701 tgaacgtgtc caagaacagt tacacgtgca tgataatcgc catattcagc taattgttta
     2761 gcgaattcat taccggacat tacgccctca gcaacgacga taatactatg ttttttacca
     2821 cgttcgcgac ctttgttcaa acgatccacg acatcatcca tattaaaact ttcttctgga
     2881 acgatgatag cttcagcacc accagcaagt ccagaccaaa gagcgatatc accagcgtca
     2941 cgtcccataa cttcaataat gaaagtacgt tcatgacttg tagctgtatc gcggatttta
     3001 tcaagtgcat caagaacagt gtttaacgct gtatcaaaac caatagtaaa atcagttcca
     3061 gaaatatcat tatcaatagt tcctgggata ccaatagttg ggaatccacg ttttgtaagt
     3121 gcttccgctc cgtgataaga accatctcca ccaataacca caaggccatc gatttgatgt
     3181 tttttcaatt gttcaattcc tttaagttgt ccttcttctg tagcgaattc aggatatctt
     3241 gcggaataaa ggaatgtacc tccgcggtga agtaaatcac caacagaacc taattctagt
     3301 ttacgaatat caccattgac tagccctaaa aagccatagt taataccgta aacttcaagt
     3361 ccttcataga ttgctttccg tacaacagca cgagtggctg cattcattcc tggagcgtct
     3421 cctccacttg ttaaaattgc aattcgtttc attttactta ccacctcaga caatgatatt
     3481 gtttttcatc acatgtgttt attctacatg aaaaaaggtc aaatgaaaag cttcaacaga
     3541 gcactttttt aaacgagaag ctttgtaaat cgccatttta aatatcggtc tattccgatt
     3601 cgtacgaaaa acggctttat agcttaaata aacataattg gtctatactt gtgaatgggt
     3661 aaactttctt tttagcgttt ggcatatacc aaagaagcgg atctcctaaa attaggaaag
     3721 ccgcttcttt tattgtttat aaagtatcgt atacaccgat tttcttgaat ttttcataac
     3781 gctgttctat taattgttct tcagaaaatg ccattagtgc atgtaaagac ttcgtgatag
     3841 ttttgttaat ttcttcggct tgtgcattta aatctcggtg cgcaccgcct tttacttctg
     3901 gaataattcc atctgtaatg ccaagttcaa ataaatcgcc agctgtaatc cgcatagact
     3961 ctgctgcttt cttcgcttga ctggcatctt tccataaaat agctgctgct ccttctggtg
     4021 aaataacaga gaaaactgca ttttcaagca tgaaaatttg atttccaaca ccaagagcga
     4081 gtgctccacc acttccacct tcaccgatta caatagaaat aattggtact ttcatatcgc
     4141 tcatttcata aagatttcta gcaatggctt cactttgacc gcgttcttcc gcagctcgac
     4201 ctggataagc acctttcgta tcgatgaagc aaataattgg tcggccaaat ttatctgctt
     4261 gtttcatcaa acgtagcgct ttacggaaac cttcaggatg aggcatacca aaattacgat
     4321 gtaaattatc ttttgtatct ttaccacgtt ggtgaccaat aactgtcact gggataccgt
     4381 ggaaagttgc gataccgcca acaattgcag catcgtcacc aaatgcgcga tccccgtgaa
     4441 gttccatgaa gtcttcgaac aaaagtgaaa tataatcaag tgtcgtaggt ctttctggat
     4501 ggcgagctac ttgaaattta tcccaagcag tcatattgct ataaatgctt gattctaact
     4561 tagctaagcg tttttctagc ttttcaattt cattggtcaa atccacatca gaagtttcat
     4621 tgtactcttt taagtcagca atcttacttt ttaattctaa aatcggtttc tcaaattcca
     4681 tctcattcgc catccgcttc acctcctact tcaggtgttt tcacgtgaat gcttaaaata
     4741 aaacttaatt tattttgcag atcaaggcgt gaaatacagt catctagttg tccatgcttt
     4801 aataaaaact ccgacgtttg gaagtcttct ggtaattctt cacgaacggt ttgttctatt
     4861 acccggcgtc cagcaaagcc aataagtgcg cctggttctg caaagttata gtctccaagg
     4921 gatgcaaaac tagcagaaac cccaccagta gttgggtgcg tcattaccgt aataatcagt
     4981 cccccgtgat tgctaaatcg tttaaatgca gcagaggttt tcgccatttg cataagcgaa
     5041 agcatcccct cttgcatacg cgcgccacct gaagcagtga aaataacaaa cggtttattt
     5101 gttttatcgg catcttccac ggcacgaaag attttttcac cgacaacaga gcccatactt
     5161 gccattctaa aacgagaatc catcactgca ataacaagcg gattaccatc aattgtagca
     5221 tgaccagtaa caatggcttc atttaaacca gatttttgct tatctttctc aatacgatcc
     5281 atataatctt caaaaccaag tggatttgct gtcgttaaac tagcatcaat ttcttcaaaa
     5341 gagccttcat caactagcat atcgattcgt gcttttgccc caattggatg atgaaaacca
     5401 caataattac ataccataag atttttttgc aattctttgg tatacattat ttttttacat
     5461 tccggacatt ttgtcataat accttctgga acatctgctt tcgttccatc agaaggaatt
     5521 gtggcatatt ttctcttttt tggttttgta aacaagtctc ctagcaagga taaccctccc
     5581 catttacgct ttctattgtg gttattaacg atttttaatg ttgtaaaaat aaaaaatgaa
     5641 taaagacatg aaacataaat caaccgcatt ttcccacaag aagacaaaat gccagtctat
     5701 ccgaattaca actggacaga ctgcgcaata ttgttttcca cgttaaacta taacatactt
     5761 tctataaata tagaaagtct aagattactt aatgactaca ttctctttac cgagtagctc
     5821 ttctaacgct tcttgcagct catttgatgg cgttacttga atatttttca gctcagcagt
     5881 ttgtttcgtt attgcttgat gcacaatgac cttactgtcg cctttataac gcgttaaaac
     5941 tggcttaatt tgttccattt gctgtggttc cgttaatttt aggaacaatc gtacgggggc
     6001 ttttatttct tttaaatctt ctgctttatt gataattaac tgtagctctc cgttccttgt
     6061 gtctgctttg acttgcaaaa agagaatctc ccctttttgt gcaaagctcg cgaatttacg
     6121 ataactttcc gggaacatga cggcgctcag ttcttttgaa tcatcactaa ttgttaaaaa
     6181 gcacatcgtt tcgccctttt ttgttctaat tgatttgact tcatgtacat aagcagctac
     6241 ttgatagttt ttgccggaag aaagatttgc aagtcttgta atagcaagat tttgtaattt
     6301 attttggtag tacgatactg gatgcgctga aacgtattga cccgtgtata atttttcttt
     6361 ctccagcttt tcgtcaatcg aaatgggcgc ggttttccgg tagcgtggtt tcatcttttt
     6421 caaaaagtca tcatcttccg cgaaaagatt cattcctttc gaatcttcac cgagtagcga
     6481 aatatattgt agcactgcat caatggttgc caaaatcgtt gctcgatcct cgccaaattc
     6541 gtcaaaacac ccagaaaata caagtgcttc taaaacggtt tctgagagca ttttatgtgg
     6601 cattctttca caaaaatcaa agaaatctcg gaaaggtgct ttttttcgtt cgttaataat
     6661 ttctaaaatg aatttcgttg gcactttacg aataacacgg aaactatagc ggatagatga
     6721 ttcattctcc acttggaagt agtaattact atggttgatg cttggcgcta acatgctaat
     6781 tccgtagttt tttgcttcgg taatgtactg ggaaattttg tcgtcattgc caaaaacaga
     6841 gctaagaagc gacgacataa atgcagctgg aaaatgtgct tttaaataag ctaattgaaa
     6901 agcgattttt gaatatgctg cagcgtgact tcggttgaaa ccgtaattcg cgaattgaac
     6961 aatcatatca tacacttggt tagcgctagc atctgaataa cctctactct tagcaccttc
     7021 cacaaagtga attcgctctt cgtttaggac atctgctttt ttcttgctga ccgctcgtct
     7081 taataaatct gcttctccaa gcgaaaatcc agccatttgg ttcgctactt gaataatttg
     7141 ctcttgataa acgataacgc cgtatgtcac ttccaaaata ggcgctaaat ctggatgagg
     7201 atattgaatt ttttcttttc cgtgttttct agcgataaat gtatcaattt gttccattgg
     7261 acccggacga taaagcgcat ctaccgccac gacatcttca aaagaagttg gttttaattt
     7321 tcggagcacg cgtcgaatcc cgtccgattc aaattggaat acccctgtcg tgtcacctgt
     7381 ttggaatagt ttcaatgttt ttttatcttc taaggaaata tctgctaatg ttaacggagt
     7441 ttctctagta taattgactg atttcaaaac acgatcaagt aaactaagat ttctaagtcc
     7501 taaaaagtcc attttaagta agccgatttt ctctaattct cccatagcaa actgggtcaa
     7561 acgtgcatct ccgctaccta attgtagcgc gacttgttct acgagtggct tgtcactaat
     7621 aactattccg gctgcgtgcg ttgaaatatg acgtggcaag ccttccagtt gacaagcaac
     7681 ttcccaaatc atttcatttt ctttagagct tttaatatgg ttttctaaac gcggactttc
     7741 ttgtagtgct ttttgtaacg taatacctaa ctgacttgga atcaacttag accattcaga
     7801 taatagtaca gaatttagcc caaaactcct cgcagtatcg cgaatcgccg cttttgccgc
     7861 tagtgttcca aacgtgccga tttgcgccac atgcgcttct ccgtatttag ataccacata
     7921 cgaaatcact tcatcacggc gattatctgg aaaatccaaa tcaatatcgg gcatcgtgat
     7981 acgttctggg tttaaaaatc gttcaaatag caaattgtaa cgaattgggt ctacatccgt
     8041 aattctgagt gcataggaaa caagcgaccc cgccgcagag ccccgacctg gacctgttaa
     8101 aattcccgcc tcgcgtgaat aacgaataac atcccaaacg attaaaaagt aatctgcaaa
     8161 acccatttcc gtaatgactt ttaattcata ttctaaacgc tcctgatatt ccacacctaa
     8221 taaatttcgt tcttttaatc ctgcaaaggc tgtttgacgc aaaacatctg atgcattttg
     8281 tccttcattt aatggaaatc taggtaataa atgctgatcc aaagcaattt cgacatgaca
     8341 acgatctgca agttcaccag tttctaagca tgcccgtttt tcgaactccg tttgccaatc
     8401 acgttccatg tcttcttgtg aggtaaaata atttggtcca gcaagtggta acgttgtcca
     8461 atcgaccgtt cgattatcac gaatggccgt taaaacttct tttgcttgcg catcttttgg
     8521 ttctatatat tgtacatttt tcgtcgcaac aaccggtaca ttttcttctg cagaaaaagt
     8581 ttctattttt gtgaaaagac gtggattttc tttttgggca gataaataaa cagattcttt
     8641 accaaaaatt tcgactaaat ttgcataaac ttccagtgct ccctcgcgat tctcctccat
     8701 cagaagacgt tcgatttctc ctttggcacc aggtgaaatc gcaatcaagt tactgctata
     8761 agcgcgtaac cagctttgtg gcaattcggg gccttcttcg cgcgtttgaa tagcactcgc
     8821 gatttttaat aactcgtgat atccagcggt tgattccgca attaatatca actcatatga
     8881 attaattgga tttaagtaac cttgaattgt caccgtcatc ccgataattg gttttatatc
     8941 cgccgctaaa cacttttgat aaaactcgac tactccgtaa agtacatttt tatccgtaat
     9001 tgctaaggct ggataatggt attcttttgc tttagcgatt agcttatcaa tcgatgctgt
     9061 acttgaaagc aaatcataag cgctcgcaac ttgtaaatga acaaacccca ctatcctctc
     9121 tcctttcaaa actctctttt tccattatat cggttaagct aaaaaaaaga aagtgtgttc
     9181 gtgtttttat ataaaaataa agccagataa ttaatccgac tttatttcct aattatttat
     9241 cggcacaaat gcgttgcaat tttgccgtca tttcctttat ttcttcttca ttatgaagtg
     9301 tcgcaccaga agcaagcgga tgtccgccgc cgccatactc tttggctaat tcattaataa
     9361 ctggaccttt agaacgtaaa cgagctctaa aaacgggacc ttcttgaatg aacataatcc
     9421 atgccttgat accttccaca ttttcgatac acgaaacaag tgcggaagcg tcgcgcggat
     9481 caacttcaaa ctcgtttaaa agcgtatcac ttaaataaac ggttgcagcg ccattttcat
     9541 ccatgacaaa gttttgcaaa atatatccag aaagttttac cgtatttttc ggtaattcat
     9601 ataattctcg gtaaagcgcc ggacgatcaa atggaaatgt cactaaatgc gcagataaac
     9661 gtaaagtctc ttccgttgtg cttggataca agaagcgccc agtatcacca acaattcccg
     9721 cataaaggag tcttgcagca gtttcattca aaattaactc atccgaaaac atttcccaaa
     9781 aagcgacaat catttcacta caagaagaag ccgtcgtgtc cacccaaagt aaatcaccat
     9841 acgcatcatc atttggatgg tggtcaattt ttataagtgc tttaccaagg ttaaaacgcc
     9901 cgtctgaaat ccgttcttgg ttcgcggtgt cacacacaat cacaagcgca tctttataaa
     9961 tttcatccgt tatttcgtcc actataccaa gaaattggag cgacttttca tcatttccaa
    10021 ctgaatagac ttttttctca ggaaagctag cccggataat ttccgcaagc cccatttgcg
    10081 atccgtatgc atctgggtca ggccgtacat gtctatgcaa aataatcgtt tcatattgtt
    10141 ttatttgttg taaaatctca cttttcattg tttcgcctct atttcttttt aacgttccat
    10201 catttgacaa gcgacaatag cttttccggt caaaattcct tctaagtaaa gctctacatc
    10261 aagcttaccg gccttacgcc ccatctccaa aattcgcggt ttaataataa ttgtcgcgtc
    10321 catttgaaca ggttttagga aatacatcgt tacattttca atcgctacat tccgtttttt
    10381 catagaaaat agtttttgct gtacgacgtc acaaaccact tgtgtaaata caccatacga
    10441 taatgttccg agtgaattag tcatttgcgg gctaacttta aattcataat ctgcctcttc
    10501 tccagtatct gctttttcag aaagctgatt cgcaatcgta tcatcaattg tttcaccgac
    10561 ttgcggttgt ttttgaatca tttgcataga ttttagaata tcctgtctgc taacaatccc
    10621 gattaatgtt aagtcatctt taacgactgg aattacttcg atactctccc aaatcatcat
    10681 gtgcgccacc gaggctacac tcatttttgg tcccacagtt aacggatttt tcgtcattac
    10741 tcgttcaatt gaaatacttg gatttttttc tagaatatcc ttacttgtaa ccatcccagt
    10801 cagtcgcatc gctcggttaa ctacaggaaa tcgactatga cctgtcgctt cttccatttt
    10861 atgccaatct tccactttat cagacgtaga taaaaatgca gttgtttcta atggggtcaa
    10921 aatatcctcc acaaatacta cttctttttt aattaattgg tcataaatcg cgcggttaat
    10981 catcgttgca actgtaaacg tatcatacga agtcgataaa atgggcagtt ctttctcgtc
    11041 cgccaaccgt ttcacttcgt cgtccgtatc aaacccacca gtaatcagta ccgcggcgcc
    11101 acgtttcaaa gcaagttcat gagcgctcac tctatttccg acaattaata agtttcctgc
    11161 atcggtatag cgttccatcg cttccactgt catcgcccca ataacaaact tattaagcga
    11221 tttataaagc cccgcacgac cgcctagcac ttgcccatcg atcatattca caatctcagc
    11281 aaaagttaat ttttcgatac tatctttttg cttccgttca attcgaagtg ttcccactcg
    11341 tttaatagta gaaacaaacc caatgatttc tgcatcttta atagcccgat aagcagttcc
    11401 ctcgcttaca gacaagtttt tcgcgatttt tcgtacagat attttttctc caactgcaag
    11461 attttcaatg tattttaaaa tctgttcatg ttttgtggcc acgacacgtt cacccattcc
    11521 tattttgtta gatttcgata ccttccccaa tttcaagtac ttttccagtt atcccctcat
    11581 caagcgatgc aacaaatttg tgcggatctt gcgcaatcaa aggaaacgta ttgtaatgca
    11641 ttggaacaac taatttcgct tgtaaaaacc gtgccgcaat cgccgcatct tctggtccca
    11701 tggtaaaatt atccccaatc ggcaagaaag caacgtctag cggatttaat tcaccaatta
    11761 atttcatatc agaaaacaaa ccagtgtccc ctgcaaaata aatattttta tcttctatcg
    11821 taaatacaat cccagttggg aaaccaaggt taacaatgcg accatctcga accgtctgcg
    11881 atccgtgaaa agcttgcgtc aacttcactt ggccaaaact aaactgtctt ttcccgccaa
    11941 tatgcattgg agcgatattt tcaagcccat cctctactgc taaaaaagaa gccaaatccg
    12001 cattacagat aacggttgct ccagaattct tagcaatttc aactgtatca ccgacatgat
    12061 catcatgtcc atgcgacaga acgataaagt caggcatctg ctcttccgct tttaaatcac
    12121 atttctcatt accagaaata aatggatcca cgagaatagt tgtatcccca gtaattattt
    12181 taatacaaga ctgaccatga aatgaaatct tcatgttaaa aaacttcct
//
LOCUS       DASEAA010000079        12156 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.079, whole genome shotgun sequence.
ACCESSION   DASEAA010000079 DASEAA010000000
VERSION     DASEAA010000079.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12156)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12156)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12156
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.079"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            11..106
                     /gene="prli42"
                     /locus_tag="U0342_001737"
     CDS             11..106
                     /gene="prli42"
                     /locus_tag="U0342_001737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722501.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stressosome-associated protein Prli42"
                     /protein_id="HEM2423082.1"
                     /translation="MTNKKVVRVVVILMLIAIVLSSVLTGVLMFL"
     gene            complement(263..1513)
                     /locus_tag="U0342_001738"
     CDS             complement(263..1513)
                     /locus_tag="U0342_001738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-oxo acid dehydrogenase subunit E2"
                     /protein_id="HEM2423083.1"
                     /translation="MAVEKITMPKLGESVTEGTISSWLVKPGDTVEKYDAIAEVLTDK
                     VTAEIPSSFSGTIKEILAEEDETLEVGEVICTIETADAGSSEPVAEVEQTETKAPEKQ
                     ETKQVKLADAPASGRFSPAVLRIAGENNIDLSTVEGTGKGGRITRKDLLQVIENGPVA
                     KREEMKSAPQEKAAMPTPPVRSAAGDKEIPINGVRKAIAKHMSVSKQEIPHAWMMVEV
                     DATGLVRYRNAVKDSFKKEEGYSLTYFAFFIKAVAQALKEFPQLNSTWAGDKIIEHAN
                     INISIAIAAGDLLYVPVIKNADEKSIKGIAREISELAGKARNGKLSQADMEGGTFTVN
                     STGSFGSVQSMGIINHPQAAILQVESIVKRPVIIDDMIAVRDMVNLCLSIDHRILDGL
                     LAGKFLQAIKANVEKISKENTALY"
     gene            complement(1544..2527)
                     /locus_tag="U0342_001739"
     CDS             complement(1544..2527)
                     /locus_tag="U0342_001739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-ketoacid dehydrogenase subunit beta"
                     /protein_id="HEM2423084.1"
                     /translation="MPVISYIDAITMALKEEMERDDKVFILGEDVGKKGGVFKATAGL
                     YDEFGEDRVLDTPLAESAIAGVGIGAAMYGYRPVAEMQFADFIMPAVNQIISEASRIR
                     YRSNNDWSCPIVIRAPFGGGVHGALYHSQSVEKVFFGQPGLKIVVPSSPYDAKGLLKA
                     AIRDNDPVLFFEHKRAYRLLKGEVPETDYIVPIGEANVVREGDDITVITYGLAVQFAQ
                     QAAERLAAEGVEAHILDLRTIYPLDQEAIIEATKKTGKVLLVTEDNKQGSIISEVAAI
                     ISEHCLFDLDAPIARLAGPDTPAMPFAPTMEKHFMINPDKVADAMKELAEF"
     gene            complement(2544..3539)
                     /locus_tag="U0342_001740"
     CDS             complement(2544..3539)
                     /locus_tag="U0342_001740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine pyrophosphate-dependent dehydrogenase
                     E1 component subunit alpha"
                     /protein_id="HEM2423085.1"
                     /translation="MTLKEAGLTEDKLIKMYETMLMARRLDERMWLLNRSGKIPFTIS
                     GQGQETAQIGAAFAFDLDKDYALPYYRDLAVVLAFGMTAKDIMLSAFAKAEDPNSGGR
                     QMPAHFGQKSNRIVTQSSPVTTQFPHAAGIGLAAKMAGDEIAIYASTGEGSSNQGDFH
                     EGINFASVHKLPVVFVIHNNQYAISVPASKQYAAEKLSDRAIGYGIPGERVDGTNMGE
                     VYAAFKRAADCARNGEGPTLIETVSYRFTPHSSDDDDSSYRSREEVDEAKGKDPLKIF
                     QAELLEEGYLTEEKIAEIEKSIAKEVNEATDYAESAAYAEPESSLLYVYDEEANS"
     gene            complement(3564..4991)
                     /gene="lpdA"
                     /locus_tag="U0342_001741"
     CDS             complement(3564..4991)
                     /gene="lpdA"
                     /locus_tag="U0342_001741"
                     /EC_number="1.8.1.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydrolipoyl dehydrogenase"
                     /protein_id="HEM2423086.1"
                     /translation="MATEYDVVILGGGTGGYVAAIQAAKNGQKVAVVEKGKVGGTCLH
                     RGCIPTKALLRSAEVLQTVKKASEFGISVEGTAGINFLQAQERKQAIVDQLEKGIHQL
                     FKQGKIDLFVGTGTILGPSIFSPTAGTVSVEFEDGSENEMLIPKNLIIATGSKPRTLN
                     GLSIDEENVLSSDGALNLETLPKSIIIVGGGVIGMEWASMMHDFGVEVTVLEYADRIL
                     PTEDKEVAKELARLYKKKKLIMHTSAEVQAASYKKTDTGVEIKAIIKGEEQTFAADKI
                     LVSVGRSANTENIGLQNTDIATENGFIQVNDFYQTKESHIYAIGDCIPTIQLAHVAME
                     EGTIAANHIAGKVAEKLDYDLVPRCIYTSTEIASVGITEEQAKERGYEVKKGKFFFRG
                     IGKALVYGESDGFIKIIADKKTDDILGVSMIGPHVTDMISEAALAQVLNATPWEVGNT
                     IHPHPTLSESFREAALAVDGNAIHG"
     gene            complement(5006..6073)
                     /locus_tag="U0342_001742"
     CDS             complement(5006..6073)
                     /locus_tag="U0342_001742"
                     /EC_number="2.7.2.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="butyrate kinase"
                     /protein_id="HEM2423087.1"
                     /translation="MSFDVLTINPGSTSTKLAVYQGDKVLFEETVRHTMQELADFNNV
                     QEQFDFRWQVLRRVMDAYGYDVKKLQAVVGRGGLLRPVAGGTYMVTEKMIDDLKENKY
                     GEHASNLGALLAKKLADELTIPSFIVDPVVVDEMQEIARISGNAFIARKSIFHALNHK
                     AAGRKIAKELGKDYEKMNFVIAHLGGGISVAAHRQGKAVDVNNALDGDGPFSPERSGS
                     LPMNDFLEACFSGKWTKRELHELIVGRGGMISYLGTNSMLEVEAKVQAGDVKAIEAFD
                     AMAYQVSKEIGACSVVLQGKVDAIILTGGLARSELFTNKIIEQTNWITSVIIEPGEDE
                     LEALNSGVQRVLAGLEKEKEY"
     gene            complement(6210..7076)
                     /locus_tag="U0342_001743"
     CDS             complement(6210..7076)
                     /locus_tag="U0342_001743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate acetyltransferase"
                     /protein_id="HEM2423088.1"
                     /translation="MTKSRFFSDVIETSSFVFAVAGADDEVVLETIRLALNQNLGKFL
                     LFGKKEDKTLTANENVTWIQTDTAEAAAQGAILAVKNKEADILVKGFIPTATLMHHVL
                     KKENGLRTDQLLSQIAIFDIPTYHKPLLITDCAMNVAPKTKEKIAITENAIAVAHQIG
                     IANPKIALLSAVEEVTAKMPSTVEAQEVVQHFDNTIAVSGPLALDVAISKEAALHKGI
                     TDSSAGEADILIAPNIETGNALYKSLVYFAGAKVGSAVVGAKVPIVISSRNDSPENKL
                     ASFILTVRLVEK"
     gene            complement(7206..8897)
                     /gene="recN"
                     /locus_tag="U0342_001744"
     CDS             complement(7206..8897)
                     /gene="recN"
                     /locus_tag="U0342_001744"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RecN"
                     /protein_id="HEM2423089.1"
                     /translation="MLQEMTIKNFAIIESLSLTFQEGMTVLTGETGAGKSIIIDALGL
                     LVGGRGSADFIRHGEERLELQGLFALAEDNLACRNALIENGIDASDDMVVLERSLFRS
                     GKNSCRINGKLVTTVLLRQIGSKLIDIHSQHEHQELMNEEFHLSLLDRFASDKIKPAL
                     TKYQTNFKEYQTIEKEWQNWTKNERELAQRLDMLRFQQQEIENANLQAGEEDRLLEQK
                     NILANFEKLNENLQGAYAAIQGEPGGLEFVGEAMRQMEAAASIHTDYKAVSEAISSSY
                     YMLEDSMSQIRQSLDQLEFQPEELNQIESRLNDLNQLKRKYGKTIEDIIQYEQEISSE
                     MEKLTDSESHVGHLETKLATLKAELTKQANTLTEIRKKAAVTLEKQIKQELNHLYMEK
                     AIFSVRFEANKMELTDSGQDSVVFYMSTNPGEPLKPLAKIASGGELSRMMLALKTIFS
                     RHQGITSIIFDEVDTGVSGRVGQAIAEKIYAVSVGSQVLCISHLPQVAAMANHHYYIT
                     KKVQNKRTTTSVTVLKGEEKVEEISRMIAGIEVTELTKQHAKEMIEQAEKVKQTY"
     gene            complement(8920..9369)
                     /gene="argR"
                     /locus_tag="U0342_001745"
     CDS             complement(8920..9369)
                     /gene="argR"
                     /locus_tag="U0342_001745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ArgR"
                     /protein_id="HEM2423090.1"
                     /translation="MNKGHRHIIIRELITSNEIDTQEDLVELLLERDVKVTQATVSRD
                     IKELHLVKVPTQTGGYKYSLPADNSFNPHQKLKRALIDCFIGIDNVQFMIILKVMPGN
                     GNSVGALIDNLDWPEKAGTICGDDTCLIICRSEENAKTLTDRFIDML"
     gene            complement(9560..10384)
                     /locus_tag="U0342_001746"
     CDS             complement(9560..10384)
                     /locus_tag="U0342_001746"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TlyA family RNA methyltransferase"
                     /protein_id="HEM2423091.1"
                     /translation="MTIKKERADILLVEQGLFETREKAKRAIMAGIVYRKEERVDKPG
                     EKIPIDSELQVKGKQMPYVSRGGLKLEKALQVFDFEVKDKLMLDIGASTGGFTDCALQ
                     NGARHSYALDVGYNQLAWKLRNDDRVTVMERTNFRHVTPADFSEGLADFATIDVSFIS
                     LKLILPVLRTVLVTGGDVMTLIKPQFEAGREQVGKKGIIRDPAVHESVVEHIVQFALD
                     NGYDLMGLDFSPITGGEGNIEFIAHLKWTGGETGTNHLEPNAIAKLITKAHTKLDK"
     gene            complement(10381..>12156)
                     /gene="dxs"
                     /locus_tag="U0342_001747"
     CDS             complement(10381..>12156)
                     /gene="dxs"
                     /locus_tag="U0342_001747"
                     /EC_number="2.2.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-deoxy-D-xylulose-5-phosphate synthase"
                     /protein_id="HEM2423092.1"
                     /translation="QLDIQELEALAADIRAFLITSTSKSGGHIGPNLGVVELTIALHY
                     SFNSPKDKFIWDVGHQSYVHKILTGRASQFGTLREHGGLDGFPKRKESIHDVFETGHS
                     STSLSAAAGMVIARDIKKEEFYVIPIIGDGALTGGMALEALNHIGDMGKDMIVILNDN
                     DMSIAPNVGAIHNILGKLRTSDTFKQTKAKVDGTFFEELGFMYLGPINGHDIEEVITN
                     LELAKRTKGPVLLHIVTKKGKGYQPAELDSRGTWHGTGPYKVETGSFIKPAKRAASWS
                     SVISNELIRLAEKDERIVAITPAMPVGSKLEKFAKAFPERFFDVGIAEQHATTMAAGL
                     ATQGMKPFLTIYSTFLQRAYDQLVHDVCRQKLNVVIGIDRAGLVGADGETHQGIFDIS
                     FLNSIPNMTISMPKDEVEARQLMDTAFSYNDGPFAIRYPRGEAPGAQVAESNTLIPIG
                     KWETIIQPIDAVILTFGPTIRLALKAAEQLELEGYHVGVINARYIKPLDEALLHQILK
                     QKIPILTVEESLLKGGFGASVLEFIEASNYSDVVMHRIGLPDEFISHGSVSIILESFG
                     ISTTGIVLKIKEMLAQSGKLRAKRL"
BASE COUNT         3279 a         2684 c         2096 g         4097 t
ORIGIN      
        1 tttcttccgc atgactaata aaaaagtagt tcgcgttgtc gttattttaa tgctaatcgc
       61 gattgtatta tccagtgttt taaccggggt attaatgttt ttataaatat ccgacgtctg
      121 agccaatttg gttcaggctt tttttatttt ttctcaaaaa aaagagcagc acccgaaagt
      181 actacccaag acatctaggg agtttagggg tatggatcta gatgtactaa acaatacccg
      241 ctaaacctag attaaaacat ttttaataca atgctgtatt ttctttggaa atcttttcga
      301 cattggcttt aattgcttgt aagaatttac ctgctagtaa gccatctaaa atacgatgat
      361 cgatggatag acataggttc accatatctc gcacggcaat catatcgtca ataatgacag
      421 gacgtttaac aatcgattcc acttgaagaa tagcggcctg agggtggtta ataatcccca
      481 ttgattgaac agagccaaat gaaccagtac tatttacagt gaaagtccca ccttccatat
      541 cagcttggct tagtttacca ttacgcgctt ttccagcaag ttcgctaatt tcgcgagcaa
      601 tgcctttaat agatttttcg tccgcatttt taataactgg aacgtacaat aaatcaccag
      661 ctgcaatcgc aatcgaaata ttgatattcg cgtgctcgat aattttatcg cctgcccatg
      721 tgctgttaag ttgcgggaat tctttcaatg cttgtgcaac ggctttgatg aaaaaggcga
      781 aataagttaa tgaataacct tcttcttttt taaagctgtc tttaactgca ttacgatagc
      841 gaacaagacc agtagcatca acttccacca tcatccaagc atgcggaatt tcttgtttac
      901 tcacgctcat atgtttagca atggcttttc ttacgccatt gattggtatt tctttatcac
      961 cagctgcaga acgaacagga ggagttggca ttgctgcttt ttcttgtgga gcagacttca
     1021 tttcctcgcg tttcgctact ggaccatttt caatgacttg aagtaaatct tttcttgtaa
     1081 ttcggccacc tttaccagtg ccttctacag ttgataaatc aatattgttt tcacctgcaa
     1141 tacgcagtac agctggagaa aatcttccac tagctggtgc atctgctagt ttcacttgtt
     1201 ttgtttcttg tttttctggc gcttttgttt ctgtttgttc tacttcagct acaggttccg
     1261 aacttcctgc atctgctgtt tcaattgtac aaataacttc gcctacttct agagtttcat
     1321 cttcctctgc taaaatttct ttgatagtgc cactaaagga tgatggaatt tcagctgtta
     1381 ctttatctgt taaaacttcc gcgatagcat catatttttc gacggtatcg cctggtttaa
     1441 ctaaccatga actaatcgta ccttctgtaa cactttcccc taatttgggc atggtgattt
     1501 tttcaactgc cacaggtctt cactccttta ttttaaaacg ggtctaaaat tccgctaatt
     1561 ctttcattgc atctgccact ttatctggat tgatcataaa gtgtttttcc atcgtaggag
     1621 caaaaggcat tgctggcgta tctggtcctg cgagtcttgc aatcggagcg tctaaatcga
     1681 atagacaatg ttccgaaata attgctgcca cttcactaat aatacttcct tgcttattat
     1741 cttctgttac aagaagtact ttacctgttt ttttcgttgc ttcaataatt gcttcttggt
     1801 ctagtggata gattgtccgt aaatcaagaa tgtgggcttc cacaccctca gctgctaaac
     1861 gttctgctgc ttgttgggca aattgaaccg caagtccgta agtaattact gtaatatcat
     1921 caccctcacg aacgacattt gcttcgccga ttggtacgat ataatctgtt tctggtactt
     1981 cacctttcag taagcgatag gcacgtttat gctcaaagaa aagtactgga tcgttgtcac
     2041 gaatcgctgc ttttaacagc cccttcgcat catatggtga ggatggaaca acaattttca
     2101 aacctggttg tccaaagaat actttttcaa ctgattgaga atgataaagt gccccgtgta
     2161 ccccaccgcc aaaaggtgcg cgaataacta tcggacaaga ccaatcgtta ttagaacggt
     2221 agcgaattct ggaagcttct gaaataattt ggttgacagc aggcataata aagtccgcaa
     2281 attgcatttc tgcaactgga cgatagccat acatcgccgc tccaattcct actccggcaa
     2341 tagccgattc agcaagtggt gtatcgagta ctcggtcttc accaaattcg tcatataggc
     2401 cagcagtcgc tttaaatacg ccaccttttt tcccaacatc ttctcctaaa ataaatactt
     2461 tatcatcgcg ctccatttct tctttaagcg ccatggttat tgcatcaata tatgaaatga
     2521 ctggcattca aattccctcc taatcagcta ttcgcttctt catcatatac atatagtaaa
     2581 gatgattctg gttcagcgta tgctgcactt tccgcgtaat cagttgcttc gttaacttct
     2641 ttcgcaatac ttttttcgat ttcagcgatt ttttcttctg ttaagtaacc ttcttcgagt
     2701 aattctgctt ggaaaatttt cagtggatct tttccttttg cttcatctac ttcttctctg
     2761 gaacgataac tactatcgtc atcatcggag gagtgtggtg tgaagcgata agagactgtc
     2821 tcaattaaag taggtccctc gccgtttctt gcacaatctg ctgcacgttt aaatgccgca
     2881 tatacttctc ccatattcgt tccatccaca cgttcaccag ggatgccgta accaattgct
     2941 cggtcagata gtttttctgc ggcatattgt ttcgatgctg gaacggaaat agcatattgg
     3001 ttattatgaa tcacgaaaac aactggcaac ttatgtacag atgcaaagtt gattccttcg
     3061 tggaaatcgc cttggttaga agatccttcc ccagttgatg cataaatcgc aatttcgtca
     3121 ccagccattt ttgctgcaag accaattcct gctgcgtgcg ggaactgggt tgttacgggt
     3181 gaactttgtg taacgattcg gtttgatttt tggccaaaat gagctggcat ttgacgtccg
     3241 ccagagtttg gatcttccgc tttagcgaac gcggataaca taatatcttt cgctgtcatc
     3301 ccgaatgcta acaccactgc taaatcacgg taatatggta atgcataatc tttatctaaa
     3361 tcaaaggcaa acgcagcgcc aatttgtgcc gtttcttgtc cttgtccaga aatggtaaaa
     3421 ggaattttcc cagaacggtt cagcaaccac atacgttcat ccagtcttct tgccattagc
     3481 atcgtttcat acattttaat taatttatct tctgttaaac ctgcttcttt taaagtcatt
     3541 tttgttcctc ctttaaagct gtattaaccg tgaattgcat tgccatccac agcaagggca
     3601 gcttctctaa aactttctga taaagttggg tgcgggtgaa tggtgttacc cacttcccac
     3661 ggcgttgcat ttaaaacttg tgctaaagcg gcttcgctaa tcatgtccgt tacgtgcggt
     3721 ccaatcatgc taacgcctag gatatcgtct gtttttttat ctgcaataat tttaatgaag
     3781 ccatctgact ctccgtaaac gagtgctttc ccgataccac ggaagaaaaa tttgcctttt
     3841 ttcacttcat aaccacgttc ttttgcttgt tcttctgtaa taccgacact tgcgatttct
     3901 gtagaagtat aaatacagcg aggaactaag tcgtagtcaa gtttttcagc cacttttccg
     3961 gcaatatggt tggctgcaat cgttccttct tccatcgcaa cgtgcgcaag ttggattgtt
     4021 ggaatgcaat caccaatcgc gtagatatgg ctttcttttg tttgataaaa atcatttact
     4081 tggataaaac cgttttcggt cgcgatatcc gtgttttgca aaccgatatt ttctgtatta
     4141 gctgaacgac cgacagaaac gagaattttg tctgctgcga aagtttgctc ttcgccttta
     4201 ataattgctt taatttccac accagtatcc gtttttttat aactagctgc ttgaacttca
     4261 gcagatgtat gcatgattaa ttttttcttt ttataaagtc ttgctaattc tttagctact
     4321 tctttatctt ctgttggcaa aattcgatct gcatattcta gcacggtaac ttctacgcca
     4381 aaatcatgca tcatcgaagc ccattccatc ccgataactc caccgccaac gataataatt
     4441 gattttggta aagtttctag gtttagcgca ccgtcagatg ataaaacatt ttcttcatca
     4501 atgcttaaac catttaatgt gcgcggtttg gagcctgtcg cgataattaa atttttagga
     4561 atgagcattt cattttcaga gccatcttca aattcgactg aaactgttcc agctgttggt
     4621 gaaaaaatag atggtcctaa aatagttccc gttccaacaa acaagtcaat tttcccttgt
     4681 ttaaataatt ggtgaatacc tttttctaat tgatctacga ttgcttgttt tctttcttgt
     4741 gcttgtaaaa aattgattcc ggcagttcct tctacagaaa taccaaattc acttgctttt
     4801 tttactgttt gcagaacttc cgctgaacgt aataacgctt tcgttggaat acatccacga
     4861 tgaagacacg ttccaccaac tttccctttt tcaacgacgg ctactttctg gccattctta
     4921 gctgcttgaa ttgctgcgac gtaaccgcca gttcctccgc caagaataac gacatcatat
     4981 tctgttgcca cattatctcc tccttttagt actctttttc tttctcaaga ccagcgagca
     5041 cacgttgcac accgctattt aatgcttcta attcgtcttc tccgggttct ataatcacac
     5101 tggttatcca gtttgtttgc tcaataattt tgtttgtaaa aagttcactt ctagcaaggc
     5161 caccagttaa aattatggcg tcaactttac cttgcaatac aacggaacat gcgccaattt
     5221 ctttgctaac ttgataagcc attgcatcaa aagcttcgat agctttcacg tcacctgctt
     5281 gtactttagc ttccacctcg agcatgctgt tagttcctaa atatgaaatc atcccaccac
     5341 gaccaacaat cagttcatgc aattcgcgtt ttgtccattt accgctaaaa catgcttcta
     5401 gaaaatcatt catcggtaaa gaaccagaac gttccggact aaaagggccg tccccatcta
     5461 aggcattatt cacatccacc gcttttcctt gtcgatgagc ggcaactgaa attccaccgc
     5521 caagatgcgc gataacaaaa ttcatttttt cataatcttt tcctagctct ttggctattt
     5581 tccgacctgc tgctttatga tttaatgcat gaaaaatact ttttctagca atgaaggcat
     5641 tgccagatat ccttgcaatt tcctgcattt catccacgac aaccggatcc acaataaaac
     5701 taggtattgt cagttcatct gctaattttt ttgcaagcag tgcccctaaa tttgaggcat
     5761 gctctccgta tttattttct tttaagtcat ctatcatttt ttctgtaacc atatatgtac
     5821 cgccggcaac tggtcgaagt aagccccctc ttccaactac cgcttgtaat ttctttacat
     5881 cataaccata tgcatccatc actcgacgta gaacttgcca cctaaaatca aattgttcct
     5941 gtacgttatt aaagtcggct agttcttgca ttgtatgtct gacagtttct tcaaaaagta
     6001 ctttatcgcc ttggtaaaca gcgagtttgg tagacgtgga accaggattt atggttaaaa
     6061 catcaaaaga catttgcttt cctccaaatt taattgtgaa aaatgcggta ggttatcatt
     6121 ttcccatgga ctattgtaac acgtaggctg taatcaaata aaagcctttg cattcagatt
     6181 gttaaagtcc gtctattcac attatttcat catttctcaa ctagtcttac agttagtatg
     6241 aatgaagcta atttgttttc cggtgaatca tttcttgagg aaatgacaat aggtactttt
     6301 gccccgacca ctgcactacc tactttagct ccagcaaagt agactaatga tttataaagt
     6361 gcatttcctg tttcaatatt aggagcaatt aatatgtctg cttctcccgc tgaactatcc
     6421 gtaattcctt tatggagagc cgcttctttg gaaatagcta catcgagagc tagcggaccc
     6481 gagacggcta ttgtgttatc aaaatgctgc actacttcct gtgcttctac tgtggatggc
     6541 atttttgctg tcacttcttc caccgcacta agtaacgcaa ttttaggatt agcgatgccg
     6601 atttgatgcg ctacggctat ggcattttct gtgatagcaa ttttctcttt tgtttttggc
     6661 gctacgttca tggcacaatc agttatcaat aatggtttgt gatacgttgg aatatcaaaa
     6721 atggcaattt gactcaataa ttggtctgta cgaaggccat tttctttttt taatacgtga
     6781 tgcatcaatg tggcggttgg aatgaatcct tttactaaaa tatctgcttc tttatttttt
     6841 accgctaaaa tggcgccttg tgctgcggct tcagcggtat ctgtttgaat ccatgtaacg
     6901 ttttcattcg cggttaacgt tttgtcttcc ttcttgccaa ataaaagaaa tttacctaaa
     6961 ttttggttta atgcaagacg aatcgtttcg agcacaactt catcatctgc tcctgctacg
     7021 gcgaaaacaa atgaacttgt ttctattaca tctgaaaaaa atctactttt tgtcataaaa
     7081 ataactcctt tatcgcacaa aaaagccgca ttccgaatta gtagttgttt ttatgaccag
     7141 gtaataattt tctaccttat tcattttaag caaaaactat tcgatatgca agcaatttcg
     7201 tttttttaat acgtttgttt tactttttcc gcttgttcaa tcatttcttt tgcatgttgt
     7261 ttggttaatt cggtgacttc tattccagca atcattcgac tgatttcttc tactttctct
     7321 tcccctttaa gcactgtaac ggaagttgtt gtccgtttgt tttggacttt tttcgtaatg
     7381 tagtagtgat ggttcgccat tgctgcaact tgaggtaagt gactaatgca tagtacttgc
     7441 gagccaactg aaacagcata aattttttct gcaatcgctt gaccaacgcg accacttaca
     7501 ccagtatcta cttcatcgaa aataatcgag gtgatacctt ggtgcctaga aaaaatggtt
     7561 tttaatgcta acatcattct agataactct ccaccagaag cgatttttgc taatggtttt
     7621 aaaggttcac ccgggtttgt tgacatatag aaaacgacgc tatcttgccc tgaatctgtt
     7681 agttccattt tgtttgcttc gaagcgtaca ctaaaaatgg ctttctccat atataagtga
     7741 tttaattctt gtttgatttg tttttctaat gtaacagccg cttttttacg gatttccgtt
     7801 agtgtatttg cttgttttgt tagttctgct ttaagtgttg ctaatttggt ctctaaatgc
     7861 ccgacatgtg attcactatc tgtcagtttt tccatttcgc tgcttatttc ttgttcgtat
     7921 tgaatgatat cttcaattgt tttaccatat ttgcgtttta attggtttaa atcattcaaa
     7981 cgtgattcaa tttgattcag ttcttctggt tggaattcga gctgatctag tgattgccta
     8041 atttggctca tgctatcttc taacatatag taactagaag aaatggcctc actaaccgct
     8101 ttataatccg tatgaatact cgccgctgcc tccatttgac gcattgcttc tccaacaaat
     8161 tccagcccac caggctcacc ttgaatcgcg gcataagctc cttgtaaatt ttcgttaagt
     8221 ttttcaaaat tggctaagat atttttttgt tctaacaagc gatcttcttc accagcttgc
     8281 aaattggcat tttcaatttc ctgttgttga aaacggagca tatccagacg ttgcgctaat
     8341 tcccgctcat ttttcgtcca attttgccac tctttctcga ttgtttgata ttctttgaaa
     8401 ttagtttggt acttggttag tgctggcttg attttgtcag aagcgaaacg atcaagtaat
     8461 gacaaatgaa actcctcatt catcaattcc tgatgttcat gctgactatg gatatctatt
     8521 aatttcgagc caatttggcg caagagaacg gtagttacaa gtttgccatt aattcggcaa
     8581 ctatttttcc ccgagcgaaa caggctgcgt tctagtacaa ccatatcatc cgaagcatct
     8641 atcccatttt caattaacgc atttcggcaa gcaaggttat cctctgctag cgcaaaaagc
     8701 ccttgaagtt ctaaacgttc ttctccatga cggataaaat cagctgatcc gcgtccgcca
     8761 acaagaagac caagcgcatc aataataatt gatttaccag cgccggtctc ccccgtaagt
     8821 accgtcatcc cttcttgaaa agttaaagaa agcgattcga tgatagcaaa gtttttaatt
     8881 gtcatttctt gaagcaaaat ctttcacctc caacaaattt taaagcatat ctataaaacg
     8941 atctgttaat gttttcgcat tttcttccga gcgacaaata attaaacaag tgtcatctcc
     9001 acaaatagtt ccggcttttt ccggccagtc caagttatcg attaatgcac caaccgagtt
     9061 tccatttcct ggcattactt ttaaaataat cataaattgc acgttatcaa tgccaataaa
     9121 gcaatcaatc aaagcgcgtt ttaatttttg atgtgggtta aaactattat cggcaggtag
     9181 actgtatttg taaccacctg tttgtgttgg aactttgaca agatgaagtt ctttaatatc
     9241 acgggaaaca gttgcctggg tgactttaac atcgcgttct aacagaagtt ctactaaatc
     9301 ttcttgcgtg tcaatctcat tggatgtaat caattctcga ataataatat gacgatgacc
     9361 tttattcatt ccttcttcac ctcacgataa ttttctactt acatcttatc cgaaaaaacg
     9421 cataaagtca cggatttagt gcaaatttat gcaagaaaag tttctttaat actttataca
     9481 taggtaatac attgcaaaat gagccaaaac agcatgataa aagcaaaaac cggaaaacat
     9541 cactgctttc cggtatacat tatttatcta attttgtatg tgcttttgtg ataagtttcg
     9601 caatcgcatt tggttccaaa tgattagttc cagtttcccc accagtccat ttaagatgcg
     9661 cgataaattc gatgtttcct tctccacctg taataggtga aaaatcaagt cccatcaaat
     9721 cataaccatt atcgagcgca aattgaacaa tatgttcaac taccgattca tgtactgctg
     9781 gatcacgaat aatccctttt ttaccgactt gctctcggcc tgcttcaaat tgtggtttga
     9841 taagtgtcat cacatcgcca ccggttacaa gcacagttct aagtactggt aaaattagtt
     9901 tgagtgaaat aaaggataca tcaatcgttg caaaatctgc taaaccttcg gaaaaatcag
     9961 ctggcgttac atgacggaaa ttagttcttt ccatcacagt gacgcgatca tcgttgcgca
    10021 gtttccatgc aagctgatta tagccaacat cgagcgcata agagtgtctt gccccatttt
    10081 gtaaagcgca gtctgtaaaa ccaccagttg atgctccgat atccagcata agtttatctt
    10141 tcacttcgaa atcaaatact tgcaatgctt tttctagctt taatccaccg cgactaacat
    10201 aaggcatttg ctttcctttt acttgaagtt cgctatcaat agggattttt tctccaggtt
    10261 tatctacacg ttcttctttc cgataaacaa ttcccgccat aattgcacgt tttgcctttt
    10321 ctcttgtttc aaatagtcct tgttctacta gcagaatatc tgcgcgttct ttttttattg
    10381 tcatagtctc ttcgccctta acttcccgct ttgtgcgagc atttctttta tttttaatac
    10441 tattccagtt gttgatatgc caaatgattc caaaattatg gatacagaac catggctaat
    10501 aaattcgtct ggtaaaccga ttcgatgcat tacaacatcg ctataattac tcgcttctat
    10561 aaattctaac acactcgcac caaatccacc ttttaatagt gattcttcta ctgttaaaat
    10621 gggaattttt tgctttaaga tttggtgtaa aagtgcttcg tctaacggtt taatatagcg
    10681 cgcattaatt actccaacgt ggtatccttc taactctaat tgttcagctg cttttagcgc
    10741 tagccggatg gtagggccaa aggttaaaat aacagcatca atcggctgaa tgattgtttc
    10801 ccactttccg attggtataa gcgtattaga ctcagctacc tgcgcaccag gagcttcgcc
    10861 gcgtggatag cgaatcgcaa agggcccatc attatacgaa aacgcagtat ccattaattg
    10921 tctagcttcc acttcatctt tcggcatgct aatagtcatg tttggaatac tatttaaaaa
    10981 tgaaatatca aagatacctt gatgtgtttc gccatcagcg ccaacaagcc cggcccggtc
    11041 aatcccaatg accacattca acttttgccg gcaaacatca tgaactaact gatcataggc
    11101 tctttgtaaa aaagtggaat aaatagtaag gaacggtttc atcccttgtg ttgctagccc
    11161 cgctgccatt gttgtcgcat gctgttccgc aatcccaaca tcaaaaaagc gttctgggaa
    11221 agctttcgca aatttttcta atttagagcc aacaggcatt gccggagtta tcgcaacaat
    11281 ccgttcatcc ttttctgcca aacgtattaa ttcattgcta ataactgaac tccatgacgc
    11341 tgcacgctta gccggcttaa taaagctacc tgtttcgact ttataaggtc ctgtaccatg
    11401 ccaggtgcca cgagagtcta attcggccgg ttgataccct ttgccttttt ttgtaacgat
    11461 atggagcagt acaggccctt ttgtgcgttt tgctaattcc aagttagtaa taacctcttc
    11521 tatatcatgc ccattaattg ggcccaaata cataaaccca agctcttcaa aaaaagtacc
    11581 atcgacttta gcttttgttt gcttaaatgt atcagaggtc cttaattttc caagtatgtt
    11641 gtggattgct cccacgtttg gcgctatcga catatcatta tcatttaaaa taactatcat
    11701 atcttttccc atatcgccta tatgattcaa agcctctaaa gccatgccac ctgttaaggc
    11761 gccatcaccg attatcggaa taacataaaa ttcttccttt ttaatatctc tcgcaataac
    11821 catcccggct gcagcagaca aagaagttga gctgtgcccc gtttcaaata catcatgaat
    11881 agattctttc cgctttggaa atccatctaa tcccccgtgc tcacgtaaag taccaaattg
    11941 gctcgccctt ccagttagga ttttgtgcac atatgactgg tgaccaacat cccaaataaa
    12001 tttatctttt ggactattaa aagaataatg caacgcaatc gttagttcta ccacaccaag
    12061 attcggacca atatgcccac ctgatttaga agtagaagta attaaaaaag cgcgaatatc
    12121 tgccgcaagt gcttctaatt cttgtatatc caattg
//
LOCUS       DASEAA010000080        12056 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.080, whole genome shotgun sequence.
ACCESSION   DASEAA010000080 DASEAA010000000
VERSION     DASEAA010000080.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12056)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12056)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12056
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.080"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1067
                     /locus_tag="U0342_001748"
     CDS             <1..1067
                     /locus_tag="U0342_001748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014654183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423093.1"
                     /translation="VILLVSIGEAISKNVSTQLGDMGSNLLTVNFYSDNPNDKFTYKD
                     AKKLLNEDEIGSPEVMQTKEVRTSEKTASNQVAGINEYYASIKNLELASGRFCSNVDV
                     IYAQKVTIIGSEIAKTYFKEQNPIGEYLQIAGARYMVIGVLKEKGESLFGSADKKLFI
                     PISSAERLFKTDTVDLYYIQTKKVEQVPAAVKVVKKKMSQFFPSNEDAYTVANQQQAL
                     DTFDSITGTLTIGLGAIAGISLLVGGIGIMNIMLVSVSERTREIGIRKAIGASSGNIL
                     MQFLIEAVVLSLVGGCIGILLGIFSAQIVTTTSSFEMYVSASTILLAVGFSMCIGIVF
                     GVIPAQKASKKMPIDALRAD"
     gene            1086..1229
                     /locus_tag="U0342_001749"
     CDS             1086..1229
                     /locus_tag="U0342_001749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003760374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BH0509 family protein"
                     /protein_id="HEM2423094.1"
                     /translation="MEKEQQTDDTWVLVEIVSLITNVERQRLRELSYTELEEFYERVV
                     VEQ"
     gene            1300..1782
                     /locus_tag="U0342_001750"
     CDS             1300..1782
                     /locus_tag="U0342_001750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463927.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SRPBCC family protein"
                     /protein_id="HEM2423095.1"
                     /translation="MNESICKRDNGGAVVNFELEINATKAEVFALLTTNAGLAKWFNE
                     LEVGELGADGYLLFVMTPEEKITMPIRAFETNQKLAFEWDQDEVDFELNEITANKTRL
                     TFREQLTTITEHSPRDISGWHICLKKLQASAEGKIYDFNKTEFETLFAKYQKELNIEK
                     "
     gene            1951..2409
                     /locus_tag="U0342_001751"
     CDS             1951..2409
                     /locus_tag="U0342_001751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463928.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2423096.1"
                     /translation="MIVSEEQLFLNQHLRTKEEVLAFIADKAEEIGITTDSAQVERDL
                     WAREKEYATAVQQLIAIPHAKTEAISEAKLLFIRLTEPIDWESKEGFKAQAIFAILVP
                     ASEASQQHLKILSSVAVNLLEEAFQEQILTIKTEHELMDYLKDNLEGELI"
     gene            2406..2738
                     /locus_tag="U0342_001752"
     CDS             2406..2738
                     /locus_tag="U0342_001752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463929.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HEM2423097.1"
                     /translation="MKVVGVTSCIAGLAHTPMAAKALEKAGVKLGHDVKIEQQGAMGT
                     IDEITPAEVSAADVVIIAADKVIDGEERFKGKPVVRVKIGQCVANGEAVLSKVVAAIE
                     ARKQKEAN"
     gene            2742..3854
                     /locus_tag="U0342_001753"
     CDS             2742..3854
                     /locus_tag="U0342_001753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_017471260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HEM2423098.1"
                     /translation="MKGKLNEAKDHLMSGISYALPVIIAGSLVVAVAKLIGIIGGVTN
                     LDAYADASGFYHYVYLFQNVGWAAIGLLNLVLAGYIAYSIAGKPALAAGFVGGVLATS
                     TNAGFLGAVVAGFFAGWLTNWVKKHVRITGPAASSLPLIILPLITVGATGILMSLILG
                     GPLGWLNQTLLDWVTEMCKNDTNVIILALILGAMIGFDLGGPVNKAAWMAGNALFMSG
                     IYLPSIMINVAICIPPLGYGIATLLRKKNYSTTFKEAGNGALIMGLIGVTEGAIPFTL
                     RSPGKLIPLNVIACAIGSAVTMGLGAYVKMPPIGGMYGFFTIGNGWAYLVGGLVGAFI
                     IGICANLFVNFTEEETAAADDAVDDIDISFDEIEIK"
     gene            3876..6503
                     /gene="mngB"
                     /locus_tag="U0342_001754"
     CDS             3876..6503
                     /gene="mngB"
                     /locus_tag="U0342_001754"
                     /EC_number="3.2.1.170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannosylglycerate hydrolase"
                     /protein_id="HEM2423099.1"
                     /translation="MAKTKVHVIPHSHWDREWYFTSSRSTIYLVKHLKEVIETLEAKD
                     DYHFYLMDAQSSLIEDYLRYCPEDKTRLEKLIAEKRLITGPWYTQTDQLVISQESIVR
                     NLLYGTRIAREMGHSMAVGYVPDAFGQGGNMPQIYKEFGISKFLFWRGVADNRLKQTE
                     FIWRGDDGTEMLAEQIPFGYYYGANIPENEAELKTYLDDQIGALEEKASTRNVYFPNG
                     LDQAPVRKNLPELVAKFNELDSTREYQIASPETFFADLEKDVTNLPVIAGELTEGKHS
                     RLHKSIFSTRADLKQANNEIENFLSNVLEPVLSISYSLGNRYPHNELAEIWKLMFENA
                     AHDSIGGCNSDTTNRDVKHRYKLASDLATNLLDLNMRLISEKIEQKQPFQFTVFNPLP
                     YEKSGVIKMTAYIPEDNFEIEDTQGNTLEYTILEKTDLTDYVLNQHIDLNPSKSIYLP
                     EKVFLATMLVNVNSLPALGYDTIYFNLEKETAEQEPTQSTMTKIENEFYEIQLAANNS
                     LTIHDKKAGRTYTDQMLFVENGDDGDSYNYSPPRKDLVISSEEAVVESLESSISSVNQ
                     TLTISFKLNVPYNLEERANGEKSNEMTIKTVISLRKNEELIRFDVQVANQVLSHRLCV
                     TFATEIASKFSTADQLFAPIQRPVRLPEMDVWEAEEWQEAPISIEAMQSFVSLHDEAH
                     GVAVMTEGVREYEIIGENYDTISLTLFRTFSHMGKTDLLYRPGRASGESIVATPDAQL
                     LGEINATFALTLFESSFDEADIAKKAKEYLSNPPVYQMSDFLNGRLIYVYRDEEKTLD
                     ATYSLALPTIDGAIISAVKKAEDADAFITRFFNPYLQKEITIPEVFQGKERHLDESES
                     NEKQTRLKHAKVQSYLFEK"
     gene            6536..8470
                     /locus_tag="U0342_001755"
     CDS             6536..8470
                     /locus_tag="U0342_001755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2423100.1"
                     /translation="MGYFAYKRLETLYGMLLDAGSHLSAQKLSQDLHISERTIRTDIA
                     KLTEFLESYGATITLTRGAGYKIEILDSLVFQAFQAEKNKPKNAGYFDLDNPEERVKY
                     EIFMLLSSGDYIKLEDLADTIFASRATISNDMKQVRKVIAVYDLTLVSKPGSGVKIIG
                     EEEKMRYALTALIASKNAPESYLETFFEWHKQKDKLQKLMTAVTDYFFATNIRFTDEA
                     LQNLLLHMMILVERIELGHTLEKFELTDVSEEEIAIATKLSTIIESLFEIDIADADKN
                     YLLLQIASKRILNVEDKEISEFDDYAYIEGMLNRIESHYFYHLQDDMQLKKDLVAHIH
                     SMLYRVKYHMTVKNPMTEHIKRYYPLAYEITLDAVESLKKDYPYDINQNELAYLALHI
                     GASLERNYQISYYRHKSALIVCGSGFGTARIVEAKVKSAVSNLDITKVVSIQEYNRFI
                     HIEEDIILSTVRIPEKNKPVIKISNIPTNEELKMLGAIIQEQTDPNRGFLSNFFTADF
                     FARSSMTNKTAILEEMVDSLRQQNIVGEGFLQSVLEREKLGSTVLGTGIAIPHPLGLM
                     AKETKIVIRILDKPIKWDQKQSVRAVFLLCISKNDYEEAINIYELLVELVREEYGEKL
                     SRLSDFHAFTALANDILKKK"
     gene            8597..9013
                     /locus_tag="U0342_001756"
     CDS             8597..9013
                     /locus_tag="U0342_001756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463933.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2423101.1"
                     /translation="MNRQTEFTLLIVGASLSILTFLGAMLYTIIFGLNTLMVADTFGY
                     YSSSEETIVLGIITFFSVVAAFFALGSAVFGFIGAFKVKSDGPKVKTLGVCFIVLGGL
                     QVFTIHGILFLIAGILTITKKEYKTNSKEDEGTKWE"
     gene            9004..9402
                     /locus_tag="U0342_001757"
     CDS             9004..9402
                     /locus_tag="U0342_001757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423102.1"
                     /translation="MGMITFLPIFFIFAIFLGLAAKVLLAIWIYKDAEQRGMNAILWC
                     LLMVFINVIIILVIYLIVRNKGEVMKQNLGLLISGIGIAVLNTLMAIMAFIFIIFFAV
                     NDGGMHNMMDGYNYDYDDGYEYDMDNFEDF"
     gene            9511..10518
                     /locus_tag="U0342_001758"
     CDS             9511..10518
                     /locus_tag="U0342_001758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEM2423103.1"
                     /translation="MDTVILITVIIVIMGLAFDFINGFHDIANAVATSISTRALKPRV
                     AIGIAAVMNFLGAISFTGVAESLTKSIVDPFSLNNGEFVVLCGLIAAVIWNLMTWLVG
                     MPSSSSHALIGAIAGASIASASSFSVLNWSGFTTIIIALIISPIIGFTVGYLIYSLFK
                     HLFHDKKLGKMNRRFRFIQIGTAAAQAYSHGTNDAQKTMGIITLALVASGLLKESAGI
                     PFWVQVSCAASMAIGSSVGGYRIIKTVGTKIMKITPVTGVASDLSSLSVIMTATLIHL
                     PVSTTQVIDSSIMGVGTANHKKEVNWRTGKNMVVTWFITLPLAGLLAAVVYWISAAIF
                     L"
     gene            10534..10914
                     /locus_tag="U0342_001759"
     CDS             10534..10914
                     /locus_tag="U0342_001759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2423104.1"
                     /translation="MKIEHVALWTTNLEQMKQFYVTYFGATANDLYENKTKGFTSYFL
                     SFEDGARLEIMSRTDVTGITTGENLGWAHIAISTGTKEAVDELTEKLRQDGFAIAGEP
                     RMTGDGYYESVVLDPEGNRIEITW"
     gene            10983..11375
                     /locus_tag="U0342_001760"
     CDS             10983..11375
                     /locus_tag="U0342_001760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1149 family protein"
                     /protein_id="HEM2423105.1"
                     /translation="MDIVTNKIVVEKYNFETIMEENEQFENKIELEVHEVEPVNGNVE
                     LMSKGKIFKITIPFLLVLENFRIDGRISRIIQLKDFFGDFSDLEAVDVEGLSNPLIDY
                     IKRLTYDVTEIAFDEPGVSLDFNANHNS"
     gene            11388..11810
                     /locus_tag="U0342_001761"
     CDS             11388..11810
                     /locus_tag="U0342_001761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463938.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NusG domain II-containing protein"
                     /protein_id="HEM2423106.1"
                     /translation="MRQYMKMVRPFDFVIIILLILGSFLPLILFSVAEAKHVGDDVVA
                     VISQDGKVVREIPLTGHKGNEQFTIKGKGAQYNLMEVDGERIRIKEDNSPDQVGVKMG
                     WKSKAGDTIVCLPHKVFVEIKSTNKKSKDPDTDLIVPN"
BASE COUNT         4015 a         2044 c         2542 g         3455 t
ORIGIN      
        1 ctgttatatt acttgtttcg attggggaag ctatatcgaa aaatgtctcc acacaattag
       61 gtgatatggg aagtaatctt ttgactgtta atttttattc agataatcca aacgataaat
      121 tcacatacaa agatgcaaaa aaacttttga atgaagatga aattggttcg ccggaagtga
      181 tgcagacaaa ggaagttaga acaagtgaaa agacagctag taatcaagta gcgggaataa
      241 atgaatatta tgcgagcata aaaaatttgg aattagcatc aggccgtttt tgctcgaatg
      301 tagatgttat ctatgcccaa aaagtgacaa ttattggctc agaaattgca aaaacttatt
      361 ttaaagaaca gaatccgata ggtgaatatt tgcaaattgc aggtgctagg tacatggtca
      421 ttggagtttt aaaggaaaag ggggagagtt tatttggatc ggcagacaaa aaacttttta
      481 tcccaatttc ttccgcagaa cgacttttta aaacagatac tgtggatttg tattatattc
      541 aaacaaaaaa agtagaacaa gttccagcag cagttaaggt agtaaagaaa aaaatgagcc
      601 agttttttcc aagtaatgaa gatgcgtata cagttgcaaa tcagcaacag gcgttagata
      661 cgtttgatag tattacggga acactcacga ttggactagg tgcgattgca gggatttcgc
      721 tactcgttgg cggtattggt attatgaata ttatgctcgt gtctgtctca gaacgaaccc
      781 gagaaattgg aattagaaaa gcgattggcg caagtagtgg caatatttta atgcagtttt
      841 tgattgaagc agttgtgctt agtttagtag gcggttgtat cgggatttta ctaggaattt
      901 tttccgcgca aatagttaca actacatcaa gttttgaaat gtatgtttct gcttctacga
      961 ttcttttagc ggttggtttt tcgatgtgta ttgggattgt atttggtgta attcccgcac
     1021 agaaagcttc aaaaaaaatg ccgatagatg cgttacgggc agattaacta gaggaggcgt
     1081 gttggatgga gaaagagcaa caaacggatg atacttgggt tttagttgaa attgttagcc
     1141 ttataaccaa cgtggaacga caaagattga gagaacttag ttatacagag ttagaagaat
     1201 tttatgaaag agtagtagtg gagcaataat taaatcttgc tttttgctag aatgataaat
     1261 ctatgcgaaa atgaaagcaa attggcagga gggatttaaa tgaacgaatc tatttgtaaa
     1321 cgggataacg gaggagctgt agttaatttt gaattggaaa ttaatgcaac aaaggcagag
     1381 gtttttgctt tattaacgac aaacgccgga ctagcaaagt ggtttaatga gctggaagta
     1441 ggcgaactag gagcagatgg ctatctactt ttcgtcatga cacctgaaga aaaaataacc
     1501 atgccaattc gtgcattcga aactaaccaa aaacttgctt tcgaatggga ccaagatgaa
     1561 gttgactttg aactaaatga aatcaccgca aataaaacaa gattgacttt cagagaacaa
     1621 cttacaacta ttacggaaca cagcccaaga gatatttccg gttggcatat ttgcttgaag
     1681 aaattacaag cgagcgcaga agggaaaata tacgatttca acaaaacgga gttcgaaacg
     1741 ctcttcgcca agtatcaaaa agaacttaat atcgaaaaat aaatccttta gaaaagtcgt
     1801 aaatgaagcc gagaatgctt tgtttatggc tttttttgta tgtattaatt tttttccact
     1861 ttaactggaa attccttatg ttcaaaaaag taatcggttt cattagaatg taattgtaag
     1921 caaggcattg aaaaaatacg gggtgacgaa atgatagtat cggaagaaca attattttta
     1981 aatcagcatc tacgcacaaa agaagaagtg ctagctttta ttgcagacaa ggcagaagaa
     2041 atcggtatca caacagattc agctcaggtg gaacgtgact tatgggctcg cgaaaaagaa
     2101 tacgcaacag cagtacaaca attaatcgct attccacatg cgaaaacaga ggcaatatca
     2161 gaagcaaaac tgcttttcat tcgcctcact gaaccgattg attgggagtc aaaagaaggt
     2221 tttaaggcac aagccatttt tgccatatta gttccagcta gtgaggccag ccagcaacat
     2281 ctgaaaattt tatctagcgt ggctgtgaat ttactagaag aagcatttca agaacaaatt
     2341 ttaacgatta aaacggaaca cgaattgatg gattacttga aagataattt ggaaggagaa
     2401 ttaatatgaa agttgtagga gttacgtcat gtatcgcagg acttgcgcac acaccaatgg
     2461 cagcaaaagc attagaaaaa gcaggagtaa aattaggaca cgatgtcaaa attgagcaac
     2521 aaggagcgat ggggacaatt gatgaaatca cgccagctga agtgagcgcg gcagatgtag
     2581 ttatcatcgc ggcggataaa gtaatcgacg gggaagagcg tttcaaagga aaaccagtcg
     2641 ttcgtgtgaa aattggtcaa tgtgttgcga acggggaagc ggtgttaagt aaagtagttg
     2701 cagcaattga agcacgtaaa caaaaggagg ctaactaagt catgaaaggg aaattaaacg
     2761 aagcaaaaga ccacttaatg tcgggtatat cctatgcgct accagtcatt atcgcaggtt
     2821 cacttgttgt agctgttgca aaattgattg ggattattgg cggggttaca aatctggatg
     2881 cttatgctga tgcaagcgga ttttatcatt atgtttatct atttcaaaat gtaggttggg
     2941 cggcaattgg cttacttaac ttagtacttg cgggatatat cgcttattca atcgctggaa
     3001 aacctgctct tgctgctggt tttgttggtg gggtccttgc tactagtaca aatgctggtt
     3061 tcttaggtgc cgttgtcgct ggtttcttcg caggttggtt aacaaactgg gtgaaaaaac
     3121 atgttcgaat cactggacct gctgcaagtt ctttaccact aattattttg ccacttatca
     3181 cagttggtgc cacggggata ctgatgtcac taattctcgg cggaccgctt ggttggttaa
     3241 accaaacgtt acttgattgg gtaactgaaa tgtgtaaaaa cgatacaaac gtcattattc
     3301 tagcacttat tttaggagca atgattggat ttgaccttgg tggacctgta aacaaagctg
     3361 cttggatggc tgggaacgcg ctatttatga gtggaattta tctaccttca atcatgatca
     3421 acgtcgcaat ttgcattccg ccacttggct acggaatcgc aacactatta cgcaaaaaga
     3481 attattctac tacattcaaa gaagctggaa atggcgcgct aatcatggga ctaattgggg
     3541 tcacggaagg tgcgattcca tttacactac gtagccctgg taaattaatt ccgctaaatg
     3601 tgattgcctg cgcgattggt agtgccgtaa cgatgggact tggcgcttat gtgaaaatgc
     3661 cgccgattgg tggaatgtac ggtttcttca ctattggtaa cggctgggct tacttagttg
     3721 gtggcttggt tggtgcattt attattggaa tttgtgcgaa cttattcgtc aatttcacag
     3781 aagaagaaac agctgctgca gacgatgctg tggatgatat cgatattagt tttgatgaaa
     3841 tagagattaa ataatagttg gaggatttaa tgaaaatggc taaaacgaaa gtacacgtaa
     3901 ttccgcattc gcactgggat agagaatggt atttcacttc aagccgttca acaatctatt
     3961 tagtgaagca tttaaaagaa gtaattgaaa cattggaagc gaaagacgat taccattttt
     4021 acttaatgga tgcccaaagc tctttaatag aagattattt gcgctactgc ccggaagata
     4081 aaacaagatt agaaaaactg attgctgaaa aacggcttat taccgggcca tggtatacac
     4141 aaacggacca attagtcatt tcacaagagt cgattgttag aaacttgtta tatggtacga
     4201 gaattgcacg cgaaatggga catagcatgg ctgtcggtta tgtcccggat gcattcggac
     4261 aaggcgggaa catgccacaa atttataaag aatttggaat ttcaaagttt ctgttttggc
     4321 gcggagttgc cgataatcgc ttaaaacaaa ccgaatttat ctggcgcggt gatgatggga
     4381 cggaaatgct agcagagcaa attccgtttg gctattacta cggcgcgaac attccggaaa
     4441 acgaagccga acttaaaacc tatttggatg atcaaattgg tgctctggaa gagaaggcct
     4501 caacgcgaaa tgtctatttc ccaaatggct tagaccaagc gccagttagg aaaaatttgc
     4561 cagaattagt tgcgaaattc aatgaattag atagcacgcg ggaataccaa atcgcatcac
     4621 cagaaacatt tttcgcggac ttagaaaaag atgtgaccaa tttgccagtc attgctggtg
     4681 aactaacaga aggaaaacat agtcggctgc acaaatcgat tttctctact cgagctgatt
     4741 taaaacaagc aaacaatgaa atcgaaaact ttttaagtaa tgtattagag ccggttcttt
     4801 ccatcagcta ctctcttgga aatcgctatc cgcacaatga actcgcagaa atttggaagt
     4861 taatgtttga aaatgctgca catgatagca ttggcggctg taatagtgat acaaccaacc
     4921 gcgacgtcaa acatcgttac aaattggctt cggatttagc gaccaattta ctcgatttaa
     4981 acatgcgcct aatcagcgaa aaaatcgaac aaaaacaacc gttccaattt accgttttca
     5041 acccactacc atacgaaaaa agcggtgtga ttaaaatgac cgcgtatatc ccagaagata
     5101 atttcgagat agaagatacg caaggaaaca cgcttgaata cacgatttta gaaaaaacag
     5161 acctaactga ttacgtctta aatcaacata tcgacctaaa tcctagcaaa tccatttatt
     5221 tgccagaaaa agtcttttta gcaacaatgc tagtaaacgt aaatagtctt ccggcgctag
     5281 gctacgacac catctacttt aatttagaaa aagaaacagc ggagcaagaa ccaacacaat
     5341 ccaccatgac aaaaatcgaa aacgaatttt atgaaatcca gctagctgcc aacaattcac
     5401 tcacgattca tgataaaaaa gcgggcagaa cctatacaga tcaaatgctt tttgtggaaa
     5461 atggcgatga tggcgattcg tataactatt cgccaccacg taaagacctt gtaatctcat
     5521 cggaagaagc ggtagtggaa agcctagagt ctagtatatc aagcgtcaac caaacattaa
     5581 ctatttcctt caagttaaat gtaccgtata atttagaaga acgtgcaaat ggtgaaaaaa
     5641 gtaacgaaat gactatcaaa acagtaattt ctttacgtaa aaatgaagaa ctcattcgct
     5701 ttgatgtaca agttgctaat caagtattga gtcatcgttt atgtgttaca ttcgccaccg
     5761 aaattgctag caaattctca acagctgatc aattattcgc accaatccag cgtccggttc
     5821 gtcttccaga aatggatgta tgggaagcag aagaatggca agaagcgcca atttcgattg
     5881 aagctatgca aagttttgtc agcttacacg atgaagctca tggggttgct gtaatgacag
     5941 agggcgtacg cgaatatgaa atcattggcg aaaattacga tacgatctcg ctaaccctgt
     6001 tccgcacatt tagccatatg ggtaaaactg atttactata tcgtcctggt cgcgcttccg
     6061 gtgagtcaat cgttgcgaca ccagacgcac aactgcttgg cgaaataaat gccacatttg
     6121 cgctaacttt attcgaaagc tcttttgacg aagcggatat cgcgaaaaaa gcaaaagaat
     6181 atctatcgaa cccgccagtt taccaaatgt ctgattttct aaacggccgc ttgatttatg
     6241 tttaccgcga tgaagaaaaa acgctagatg ccacatatag cttggcactt ccgacaatag
     6301 atggagcgat tattagtgca gtaaaaaaag ccgaagacgc cgatgccttc attacacgct
     6361 ttttcaatcc atatttacaa aaagaaatta ccattccaga agttttccaa ggcaaggaac
     6421 gccacttgga tgaaagcgaa tcaaacgaga aacaaacgag attaaaacat gcaaaagtac
     6481 aaagctattt atttgaaaaa taacgcttaa ctacctaaaa aaggagctgc taataatggg
     6541 atatttcgct tataaacgtt tggaaacact atatggcatg ctccttgatg cgggtagcca
     6601 cttatcagct cagaaactca gccaagattt acatatttcc gaacgtacga tacgaacaga
     6661 tattgctaaa ctaactgaat ttctcgaaag ctacggggca acgataacgc taactcgagg
     6721 cgcgggatac aaaatcgaaa tccttgattc gttggttttt caagcttttc aggccgaaaa
     6781 aaacaaacca aaaaatgcgg gttattttga ccttgataat cccgaagaac gcgtgaaata
     6841 cgagattttc atgctgctat caagcggcga ctatattaaa ttggaagact tggcagatac
     6901 gatttttgct agccgtgcaa ccatttcaaa tgatatgaag caagtacgaa aagttattgc
     6961 ggtgtatgat ttaacgctcg tctcaaaacc aggtagcggc gtgaaaatca tcggagaaga
     7021 agaaaaaatg cgctatgctc taaccgcgtt aattgcttcc aaaaacgccc cggaatccta
     7081 cttagaaaca tttttcgaat ggcacaaaca aaaagataaa ctgcaaaaat taatgacagc
     7141 tgtgacggat tatttttttg cgaccaacat tcgtttcaca gacgaagcgc ttcaaaactt
     7201 acttttacat atgatgattt tggtggaacg aattgaactc ggtcatacgt tggaaaagtt
     7261 tgaattaacg gatgttagtg aagaagaaat cgcgattgcg actaaattgt ctactattat
     7321 agagtcgctt ttcgaaatag acattgcgga tgcggacaaa aattatttgc ttctccaaat
     7381 cgccagcaaa cgaattctga atgtagaaga taaagaaatt agcgaatttg atgattacgc
     7441 gtatattgaa ggcatgttga accgcattga gtcccattac ttttatcatt tacaagatga
     7501 tatgcagctt aaaaaggacc ttgttgctca tattcattcc atgttatatc gagtaaaata
     7561 ccatatgacc gtcaaaaatc caatgacaga gcacattaaa cgctattacc ctttagccta
     7621 cgaaatcacg ctcgatgcag tggaatcact aaaaaaagac tacccgtatg acattaatca
     7681 aaatgaatta gcctatttag cgctgcatat tggggcatcc ttagagcgga attatcaaat
     7741 ctcttactat cgtcataaat cagccttgat tgtttgtggg tcaggctttg gaacagcacg
     7801 aattgtagaa gcgaaagtaa agtcagcagt gagtaatctc gatattacaa aagtagtttc
     7861 aatccaagaa tataaccgtt ttatccatat tgaagaagat atcattctct ccaccgttag
     7921 aatacctgag aaaaataaac cggtcatcaa aatcagcaat atcccaacca atgaagaatt
     7981 aaaaatgctt ggtgccatta ttcaagaaca aaccgatcct aaccgcggct ttctatcgaa
     8041 ttttttcaca gctgattttt ttgccagaag cagtatgaca aacaaaacag caattttaga
     8101 agaaatggtt gactcattac gccaacaaaa tattgttggt gaaggcttct tgcaatcggt
     8161 tcttgaacgt gaaaaattag gctcaactgt actcggaacc ggaatagcaa tcccacatcc
     8221 actcggacta atggccaaag aaacaaaaat cgttattcgg atattagata aaccaatcaa
     8281 atgggatcaa aaacaatccg ttcgcgccgt atttttatta tgtattagca aaaatgatta
     8341 tgaagaagcc attaatattt atgaattgct agtagaatta gtacgcgaag aatatggtga
     8401 gaagctttca aggctttccg actttcatgc attcactgct ttagcaaatg atattttgaa
     8461 gaaaaaataa aagctacttc cttttttagg aagtggtttt ttcgtgaatt tttcgtgaat
     8521 tttaccattt ttcgtttagt gataggttat ttcatggtac actataagaa taataactaa
     8581 atatatggag gatttaatga acagacaaac agaatttaca ttacttattg tgggggcttc
     8641 attaagcatt ttaacttttc taggtgctat gttgtatacc attatttttg gacttaatac
     8701 cctaatggta gctgatactt ttggttatta tagtagctca gaagaaacga ttgtacttgg
     8761 gataattact ttcttttcag tagttgctgc attttttgca ctcggatcag cagtttttgg
     8821 atttatcggt gcatttaaag tcaaaagtga cgggccaaaa gtaaaaacat taggcgtttg
     8881 ttttatcgtt ttgggtggat tgcaagtatt tactattcac ggaattttat ttttgattgc
     8941 aggaatttta acaattacaa aaaaagaata caaaacaaat tctaaagaag atgaggggac
     9001 aaaatgggaa tgataacgtt cttaccaata ttttttattt ttgcgatttt tttaggacta
     9061 gcagcaaaag tccttttagc aatttggatt tataaagatg ctgaacaacg cggaatgaac
     9121 gcaattcttt ggtgtctgtt aatggttttc attaatgtca ttattattct tgttatttac
     9181 ctgatcgtac gtaataaagg agaagtcatg aagcaaaatt taggactact aattagtggt
     9241 attggtattg cggtactaaa tacattaatg gcgattatgg cttttatttt tataatcttt
     9301 tttgcggtga atgatggtgg aatgcataat atgatggacg gttataacta tgattatgac
     9361 gacgggtacg agtacgatat ggataatttt gaagattttt aataacacca acgagaatct
     9421 gctacctaat acaggagcag attcttttta tatttctata aaaggggtat agacaataaa
     9481 aaagtgaata tcgacaaggg gaactgctga atggatacgg ttattttaat tacggttatt
     9541 atcgttataa tgggcttagc atttgatttt ataaatggat ttcatgatat tgcaaatgct
     9601 gtggccacaa gtatttcaac tagagcttta aaaccgcgag tggcaattgg aattgcggca
     9661 gtcatgaatt ttctgggagc catttcgttt accggagtag ctgaatcgct caccaaaagt
     9721 attgtagatc cattttcgct taataatgga gagtttgtcg ttttatgcgg cttaattgcg
     9781 gcagtgattt ggaatttgat gacttggctt gttggcatgc ctagtagttc ctcgcatgcg
     9841 cttatcggtg cgatagctgg ggcctccatc gcatcagcca gtagttttag cgtgcttaat
     9901 tggtcaggat ttacaactat tattattgca ctcattatct cgccgattat cggttttaca
     9961 gtaggttatt tgatttattc actctttaag catctttttc acgacaaaaa gcttgggaag
    10021 atgaatcgac gctttcgttt tatccaaatt ggaacagctg ccgcccaagc atattcacac
    10081 ggcacaaatg atgcccaaaa aacgatggga attatcacgc ttgctttagt tgcgagtggg
    10141 cttttgaaag agtcagctgg tattcctttt tgggtgcaag taagttgtgc ggcatcgatg
    10201 gcgattggat cgtctgttgg tggttatcga atcatcaaaa cagtaggaac taaaatcatg
    10261 aaaatcaccc cagttacagg tgttgcgtcc gatttaagct cactttctgt aatcatgaca
    10321 gctactttga ttcatttgcc agtcagcact acgcaagtta ttgacagctc gattatgggt
    10381 gtcggaacag ctaaccataa aaaagaagtc aattggcgta cggggaaaaa tatggttgta
    10441 acttggttta tcacgttacc actagctgga cttttagcgg cagtggtata ctggatatca
    10501 gcagctattt ttttataata aggaggattt taaatgaaaa tagaacatgt tgcattatgg
    10561 acaactaatt tagaacaaat gaagcaattt tacgtcactt attttggtgc aacggccaat
    10621 gatttatatg aaaacaaaac aaaaggcttc acttcttact ttctttcgtt tgaagacgga
    10681 gcaagacttg aaattatgag tcggacggat gtaacaggaa taacaactgg ggaaaactta
    10741 ggctgggcgc acatcgctat ttcaacagga acaaaagaag cagtagatga gctaactgaa
    10801 aaactaagac aagatggttt tgcaattgcg ggtgaaccaa gaatgacagg agacggatac
    10861 tacgaaagtg tcgtgctaga cccagaaggc aatcgcatcg aaattacgtg gtagtattga
    10921 tttgctagga acttagttat cgtgtaatat acggggtaca tactacaaat gaggtgaatt
    10981 ttatggatat cgtaactaat aaaattgtcg tagaaaagta taattttgaa acaatcatgg
    11041 aagaaaatga gcaattcgaa aacaaaattg aattagaggt ccatgaagtc gagccagtca
    11101 atggaaatgt ggaacttatg tcaaaaggaa aaatttttaa aatcacaatt ccttttttat
    11161 tagtccttga aaatttccgg attgacggta gaatcagccg tattattcaa ttaaaagact
    11221 tttttggaga tttttccgat ttagaagctg tagatgttga aggcttatcc aatccactaa
    11281 ttgactacat caaacgctta acatatgatg taacagaaat cgcatttgat gaaccgggag
    11341 ttagcttgga ttttaacgct aatcataata gctagttagg agagaaaatg cgtcaatata
    11401 tgaaaatggt acgtccgttt gattttgtaa ttattatttt actaatcttg ggttcgtttt
    11461 taccactaat attattttct gtcgctgaag caaagcacgt gggcgatgat gtcgtagcag
    11521 ttatttcaca agatggcaaa gtggttcggg aaatcccgct aactgggcac aaaggaaatg
    11581 agcagtttac gattaaagga aaaggcgcgc aatataattt gatggaagta gatggcgagc
    11641 ggattcgaat aaaagaagac aacagtccag accaagtagg cgtcaaaatg ggctggaaat
    11701 ccaaagccgg tgacaccatt gtttgtttac cacataaagt tttcgtagag ataaaatcga
    11761 caaacaaaaa aagcaaagac cccgatacag atttaattgt gccgaattaa aacacactaa
    11821 gcgattagtg tgtttttttg tttgaaccaa ctaatttaaa aattattgtc aaatttatgt
    11881 cacgtgtttt catggttgct acttaggtat ctaagaaaca aaaataagaa gcggaaattt
    11941 gcatattaaa attagacaac tacttcaaaa tacggtgtta caatcaataa gccataataa
    12001 tgattgtaag taagcttagt tgaaggaagg tactaaaatg aaagcgaaaa ataatt
//
LOCUS       DASEAA010000081        12036 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.081, whole genome shotgun sequence.
ACCESSION   DASEAA010000081 DASEAA010000000
VERSION     DASEAA010000081.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 12036)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 12036)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..12036
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.081"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            5..2587
                     /locus_tag="U0342_001762"
     CDS             5..2587
                     /locus_tag="U0342_001762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-mannosidase"
                     /protein_id="HEM2423107.1"
                     /translation="MEDSNILLIENLDYLLNVLETKDSFASYSFDGQMSVIERYLDIR
                     PENKARVEKLIQDRRLFVGPWYTQTDSLLVKTEAVIRNLLYGYKMGEEFGHSMSIGYS
                     PDIFGQHAYLPAIYKSFNMEHSIFQRGVYNDQVQDDLNFHWTSPDNKSIPTNNIFFGY
                     GPGKFLSSEKSYVETRLLPILDRLAEMNTHTDVLLLPAGGDQVLVRENFPEIVAELNE
                     MDLGYTFILSDYEAFMNDAWTSTFPNEITGELLACQKSRIHHTCRSERYDIKRLNYLV
                     ENRLVNILEPLATMANKFGIKYPKPWLDIIWKKLFDSHAHNGIGASNSDDANHDIVVR
                     LTSALRMTDGLINLLKKQITKAVSQEMGDENIALLFNTNPVAEERTAKLTLFTPEKSF
                     QLFSGDAEVTFSVVHQEKLDGGRKVIVTAKGEKEVAVPDYYRTEIYLKSGLIPALGYK
                     TLQVKAVTTEMDQLISISKQTIENEKIIVQFENGKINLLNKEQQSIINDLIRFENVAD
                     AGDSFDFSPLEGDQAIYIETSELLTVEKNHLYSKMMLKHTALVPKDLEARAQKTSTET
                     FEILTEIELFDGEEFVRVRHTIDNKVKDHRIRALIKTNVAEPKYSYADQGYSLMKRSV
                     TNPYLANWREDKFVEAPVPIFPVENIVAVSEEDATLALLVGGIKEYEILPKTAEIALT
                     LFRSNGLLGKDDLMWRPGRASGINNKVVPTPDGQMLEEMIFEYAVYVQPEKLNEQTLY
                     AQSNIFEGHTETYHLQNLNTFEERLERFEVDYPIDRLPAQNSIFELDNPNVFMSTCKK
                     SWDGTGTIIRLFNPSDKEETVRWTTNASSFEVSLAEEKIAELKENTICIPKKGFATIL
                     LEGE"
     gene            2589..4271
                     /locus_tag="U0342_001763"
     CDS             2589..4271
                     /locus_tag="U0342_001763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphorylase"
                     /protein_id="HEM2423108.1"
                     /translation="MQTELVNQIEVKLRKIYQAAYQPAYLEKMLACAENYSNNARGSI
                     DTISEKNVYLIAYGDSIFEKNKHPLQTLNEFLQEYAQDVITDVHLLPIFPSTSDDGFS
                     VTDYKQIDEQLGDWDDVQKMSENFRVMLDFVANHMSKSSDWFKRFSDNEAPYNQFFIE
                     KNSQFDYKNVTRPRTSPLFHKYENGKELWTTFSEDQLDLNVRNIDCLVALTDVLLFYA
                     SKQATSIRLDAIGFLWKTSGTTCMHLPETHEIITLWRLLIDELYPNLQIITETNVPHE
                     ENISYFGDGENEANMVYQFPLPPLVLHTFTCHDTTKLSKWAKSISQVSSTATYFNFLA
                     SHDGIGMRPATGILSDEEINSLVQKAVQNGGQVSYKDNADGTQSVYELNINYGEALQN
                     LGEDTTEELVTKKIIAAHSILLTLQGIPAIYYHSLLGSKNDLVGYEESGINRRINREK
                     LEKNQLVHELETDTYRQTIFTSLKKLVPIRRNHTAFSPFATQEILDLGPDVFAIKRES
                     EEECIYGIINVTSHNIRKTLAFSGTNLLTNQPVTSELELTAYEVVWIKKAVQ"
     gene            4268..5401
                     /locus_tag="U0342_001764"
     CDS             4268..5401
                     /locus_tag="U0342_001764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerate kinase"
                     /protein_id="HEM2423109.1"
                     /translation="MKIVIAPDSFKESATAVEVANAIKKGWTKARPADQISLAPVSDG
                     GEGFLTVLSESSEVELFQAEVTNLNGHKITASYGILASQETAIIESANTIGLDLIPAV
                     DRNPAYASSKGVGELILAALNHNVKKIIIGLGGSGTNDGGAGLIQALGVALLDKNKQP
                     IPPGGIHLQELAYIDASNLNPKLKNIQFQIACDVTNPLLGENGATFVFGAQKGATPEM
                     LVQLERAMQNYGAKLDQFSSQKITTKKGAGAAGGIAAGLMTFLNTDVLSGSALVMELS
                     NMKDKMKDADIVIVGEGRMDKQSMMGKIPVQIAQEAKKQGCFVLAIVGSLALENNIAQ
                     QHGIDAFFPNIPEITDLPTLFENTTKNLERTAENIAKLTLIGK"
     gene            complement(5406..6362)
                     /locus_tag="U0342_001765"
     CDS             complement(5406..6362)
                     /locus_tag="U0342_001765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2423110.1"
                     /translation="MPNIKEIAKLARVSVTTVSRVLNNHPYVVEEKRARVQAVIDELD
                     YSPNRSAMDLARGKTNTVGVIIPYNDHPWFDKIVNGILEVAFKNRYSVTLFPTGYDPK
                     EEEKYLMRLKTKQVDGLIITSRANNWDVILPYLAYGPIIACEYVESKEVSCSYIDRVK
                     AYRAGFQFLEDEGYKKVAFTAGRASRESTSTYGKINAYEQVFGSVGDNRFLSECYTLE
                     DGLKAGEHFFAEGKDWPDAIYANGDEVAAGVMYHVKKLGLRVPEDVAILGQENLPIGK
                     VLEITTLDHNLKKLGENAFTIFEQGKLQRIKVEHELIRRKTV"
     gene            complement(6430..7764)
                     /locus_tag="U0342_001766"
     CDS             complement(6430..7764)
                     /locus_tag="U0342_001766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM2423111.1"
                     /translation="MNPDPESQQIILQLILIVVLTMLNAFFASAEMALVSLNKNRVKS
                     QAETGDKKAVMLAKLVDDPSKFLATIQVGITLAGFFSSASAATSIATRLESVFGGSSF
                     AKELSIIVVTIVLSYITLVFGELYPKRLALQKSEKIARVSVRPIMAVGVVLRPFVKFL
                     SFSTDILVKLTRMEKNTDNEKMTREEMQLLIETGRRDGVIEVEELQMLRGVFEMDNKY
                     AREVMVPRTDAFMIDAETESEELCDALLSENFSRVPVFTGDQDSVLGILHMKDFFAEA
                     RKSGFENIDVKALVKDAYFAQETMFIDDLLKNMQRTRNQMAILMDEYGGVAGIVTVED
                     LLEEIVGEIDDENDVFSDEVKKIDETTFIVEGRMPLDDFNEMFHVELPSRGVDTVAGF
                     VLTLTGTIPEEDDKVVVEYGTLRFTVEEMNDARLVSVRVEKDIQTSELEQMA"
     gene            complement(7882..8571)
                     /locus_tag="U0342_001767"
     CDS             complement(7882..8571)
                     /locus_tag="U0342_001767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466261.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD-dependent protein deacylase"
                     /protein_id="HEM2423112.1"
                     /translation="MNKLNEALKKAEHIVFLTGAGVSVPSGIPDYRSKNGLYAGMSSP
                     EYMLSHTCLVREPEKFYQFVTENMYYPDAEPNAIHTKMAEIEAEKDVTIITQNIDGLH
                     EKAGSKKVVNFHGSLYHCYCQKCGMSVTAEEYLKSDIHSGCGGVIRPDVVLYEEAIPE
                     SAIDQSLAAIRQADLIVIVGTSFRVSPFCNLTDYRNKKARIFAVNKEQISLPYPFEMM
                     ESDAVKVFAEI"
     gene            complement(8564..8854)
                     /locus_tag="U0342_001768"
     CDS             complement(8564..8854)
                     /locus_tag="U0342_001768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466262.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mitomycin resistance protein mcrB"
                     /protein_id="HEM2423113.1"
                     /translation="MPTELIKLPGIGKKMVLMLNEIGVEEVADLKGKNPLELYEDTCD
                     KRGERMDPCVLYTYRCAVYVAETDEAEQDVDLRKWWNWKDKQHINERNLKNE"
     gene            complement(8844..10052)
                     /gene="lde"
                     /locus_tag="U0342_001769"
     CDS             complement(8844..10052)
                     /gene="lde"
                     /locus_tag="U0342_001769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466263.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter Lde"
                     /protein_id="HEM2423114.1"
                     /translation="MENWKKNLYVVWVGCFLTGTGLNLIMPFLPLYIEELGVHNPDQV
                     SMWSGIALSSTFLVSAIMSPIWGKLADQKGRRIMLLRAALGMAIAMILMGLVSNVYQF
                     VGLRLLMGIFSGYISTANALIATQVPRHRSGWALGALSTAAVSGVLIGPLIGGALSDT
                     FGVRPVFYITGALLLGSFFLTLFFVKEKFTPVEKKEMRSGKEVFLSLKNPGLIISLFI
                     TTMMIQIASNSVNPILTLYVRDLAGNAQNIAFISGMIASVPGVAALIAAPRLGRWGDR
                     IGSERILLGALIGSMLLQIPMAFAQNPLQLGILRFLLGLTDGALLPAVQSLLTKNTPR
                     EVSGRIFGYNQSFQYIGNVIGPLVGSSVAAHFGYGDVFLVVAGFIFINVLISFYFNRK
                     MHGEKGNHAN"
     gene            complement(10169..10516)
                     /locus_tag="U0342_001770"
     CDS             complement(10169..10516)
                     /locus_tag="U0342_001770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423115.1"
                     /translation="MNQTFIVKKEHVSQYPNPLFVNKNESIWVFEEDTEYPGWIFCKV
                     KSTGKEGWVPKQIIQLSNDGKSGTVSEDYSARELNVKPGDKLESNRELNGWVWCVTEE
                     NEAGWVPRGNLEA"
     gene            complement(10535..11179)
                     /gene="fsa"
                     /locus_tag="U0342_001771"
     CDS             complement(10535..11179)
                     /gene="fsa"
                     /locus_tag="U0342_001771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466265.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fructose-6-phosphate aldolase"
                     /protein_id="HEM2423116.1"
                     /translation="MRFFIDTANVEEIKKANRMGFIAGVTTNPSLVAKEGRDFNEVIQ
                     EITSIVDGPISGEVVSLEADEMIAEGRVIAKIHPNMVVKIPMTGEGLAAVKVLTEEGI
                     KTNVTLVFSATQALLAARAGATYVSPFLGRLDDIGDDGLVLIRDIADIFEIHGIPTEI
                     ISASVRHPIHVIECAKAGADIATVPFKVFEQMLKHPLTDSGIDKFLADWEAAKK"
     gene            complement(11321..12010)
                     /locus_tag="U0342_001772"
     CDS             complement(11321..12010)
                     /locus_tag="U0342_001772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423117.1"
                     /translation="MLFLKELESNLTVSKLMELCFEHPSYKDYCSVISTKKGEVLESL
                     SPAGTKVYFVLSGIYGMIVEEDAEMEEESYKESIVRFLQKGDSFGLYHLFYDEWSPHV
                     SMQSLGHGEVMEVDSNFLFSIFDKKDENNFFMIKVMAEELREAHTFAKLSFLKKEERI
                     RKAILKCAQTLGTFSDNGILLPREITQEVLARYTNTSREYVAHTVMHLIKEDIIRNRP
                     KPLLVMDKTRL"
BASE COUNT         3717 a         2762 c         2065 g         3492 t
ORIGIN      
        1 caccatggaa gattccaata tcttattaat tgagaattta gactatcttt taaatgtttt
       61 agaaacaaaa gattcctttg caagttattc ctttgatggt caaatgtctg tcattgagcg
      121 ttacttagat attcgtccag aaaataaagc gcgcgttgaa aaacttatcc aagatcgtcg
      181 tctgttcgtc ggtccgtggt atacacaaac cgatagcttg ttagttaaaa cagaagctgt
      241 gattcgcaac ttactttatg gttataaaat gggcgaagaa ttcggccata gcatgagtat
      301 cggttattcc ccagatattt ttgggcaaca tgcttatctg ccagctattt ataaatcatt
      361 taatatggag catagcattt tccagcgtgg tgtttataac gatcaagtgc aagatgacct
      421 taacttccac tggacatctc cagacaacaa gtccatccca accaacaata ttttcttcgg
      481 ttatggaccc ggcaaatttt taagcagtga aaaaagctat gtagaaactc gtcttctgcc
      541 aattttagat cgacttgctg aaatgaacac acatacagat gtccttcttt taccagcagg
      601 cggcgaccaa gtacttgtgc gcgaaaactt cccagaaatt gtcgcggaat tgaacgagat
      661 ggacttaggt tataccttca ttctgtccga ttacgaagca tttatgaatg atgcttggac
      721 ttctactttc ccgaacgaaa tcactggtga actgcttgct tgccaaaaat cacgaatcca
      781 ccatacatgt cgttcagaac gctacgatat taaacgtctt aattacttag tagaaaatag
      841 attagtcaac attctagaac cacttgcaac aatggccaat aaattcggaa tcaaatatcc
      901 taaaccttgg ttagatatta tttggaaaaa attatttgat agccacgctc ataacggtat
      961 tggtgcttca aattcagatg acgcaaacca tgacatcgta gttcggctaa ctagcgcact
     1021 tcggatgaca gatggcttaa ttaacctttt gaaaaaacaa attacgaagg ccgttagtca
     1081 ggaaatgggc gacgaaaata ttgcgctatt attcaatact aacccagtgg cagaagaaag
     1141 aactgcaaaa ctaacattat tcactcctga aaaatcattc caactgttct caggtgatgc
     1201 ggaagtgact ttcagcgttg tacatcaaga aaaattagac ggtggacgga aagtaatcgt
     1261 aactgcaaaa ggcgaaaaag aagttgctgt tcctgattat tatcgtacag aaatctactt
     1321 gaaaagcggc ctaatccctg cacttggtta caaaacattg caagtgaaag ccgttactac
     1381 agaaatggac caattaatca gcatttccaa acaaacaatt gaaaatgaaa aaatcattgt
     1441 tcaattcgaa aacgggaaaa tcaatctttt aaataaagaa caacaaagca ttataaatga
     1501 ccttattcgc ttcgaaaatg tggctgacgc tggggattct tttgacttct caccacttga
     1561 aggcgaccaa gccatctata tcgaaacaag cgaattacta accgttgaaa aaaatcatct
     1621 atatagcaaa atgatgttaa aacatactgc tttagttccg aaagatttag aagcccgcgc
     1681 acaaaaaaca agtacagaaa catttgaaat tttaacagaa atcgaacttt ttgacggtga
     1741 agaattcgtc cgtgttcgcc atactattga caataaagta aaagaccacc gcattagagc
     1801 attgattaaa acaaatgtag cagaacctaa atattcttac gcagaccaag gttatagcct
     1861 catgaaacgc agcgtcacaa acccttacct tgcaaattgg cgcgaggaca aattcgtgga
     1921 agcacctgtg ccgattttcc cagtggaaaa tatcgtcgct gtttctgaag aagacgcaac
     1981 acttgccttg ttagttggcg gtatcaaaga atatgaaatc ttaccgaaaa ctgctgaaat
     2041 cgcattaact cttttcagaa gtaatggttt gcttggaaaa gatgatctca tgtggcgtcc
     2101 aggtcgtgct tccggtatta ataacaaagt cgttcctaca ccagacggtc aaatgctcga
     2161 agaaatgatt tttgaatatg ctgtgtacgt acaacctgag aaactaaatg aacaaacgct
     2221 ctacgcgcaa tctaacattt ttgaaggtca tacagaaacc tatcacttac aaaacctaaa
     2281 tacatttgaa gagcgcctag aacgttttga agtagattat ccaatcgacc gtttaccagc
     2341 tcaaaattct atctttgaat tagataaccc gaacgtattc atgagcactt gcaaaaaatc
     2401 gtgggatggc actggcacaa ttatccgcct atttaaccca tcagacaaag aagaaaccgt
     2461 tcgctggaca accaacgctt ccagttttga agtttcacta gcggaggaaa aaatcgcaga
     2521 actaaaagaa aacactatct gtattcctaa aaaaggattt gcaactattt tgttggaagg
     2581 agaataatat gcaaaccgaa ctggttaatc aaatagaagt aaaactaaga aaaatttatc
     2641 aagctgcata ccaacccgca tacttggaaa aaatgctcgc atgcgccgaa aactattcta
     2701 ataatgcgcg tggttcgatt gatactattt ccgaaaaaaa cgtctatctt attgcctatg
     2761 gcgacagcat tttcgaaaaa aacaagcatc cgttacaaac attgaatgaa ttcctacaag
     2821 aatatgcgca agatgttatt acagatgtcc acttgctgcc gattttccct agtacgtcag
     2881 atgatggctt ctctgtcaca gactacaagc aaattgacga acagcttggc gactgggatg
     2941 acgttcaaaa aatgtctgag aacttccgag tgatgcttga tttcgtagcc aatcatatgt
     3001 cgaaatcaag tgattggttt aagcgattct ccgataacga agcgccgtac aatcaatttt
     3061 tcatcgagaa aaacagccaa tttgattata aaaacgtcac acgtccgcgg acttctccgc
     3121 tgttccacaa atacgaaaac ggtaaagaac tttggactac ttttagcgaa gatcagttag
     3181 acttaaatgt ccgtaatatc gattgccttg tagccttaac agatgtactg cttttctatg
     3241 catccaaaca agcgacaagc attcgacttg atgccattgg atttttatgg aaaacttctg
     3301 gcactacttg tatgcacctg ccagaaaccc atgagatcat cacgctttgg cgtctgctga
     3361 ttgatgaact atatccaaat ctgcaaatta tcacagaaac aaacgtccct catgaagaaa
     3421 acattagtta ttttggcgat ggtgaaaatg aagcaaatat ggtttatcag ttcccgcttc
     3481 cgccacttgt gctccatacc ttcacttgcc atgatacaac gaaactttcg aagtgggcga
     3541 aatccatttc acaagtttct agcacagcga cttattttaa cttcttagca agtcatgacg
     3601 gaattggtat gcgccctgcg accggaattc tttccgacga agaaatcaat tctctcgtcc
     3661 aaaaagcggt ccaaaacggt ggccaagttt cctataaaga caacgcagat ggcacgcagt
     3721 cggtatacga acttaatatt aactacggtg aagccctgca aaacctgggc gaagacacaa
     3781 ccgaagaact cgtaacgaaa aaaattatcg ctgcccatag tattttgcta acacttcaag
     3841 gcatcccagc gatttactat cattcccttc taggttctaa aaacgacctt gttggttacg
     3901 aagaatccgg tattaatcgc cgcatcaatc gtgaaaaact ggaaaaaaat caattggttc
     3961 atgaacttga aacagacact tatcgacaaa ccattttcac atcactgaaa aaattggtgc
     4021 caatcagacg aaaccacacc gctttttcac catttgcaac ccaagaaatt ttagatttag
     4081 gaccagatgt ttttgcgatt aaacgggaat ctgaggaaga atgtatttac ggaattatca
     4141 acgtcacttc tcataatatc cgcaaaacgc tcgctttctc tggcacgaat ttattaacca
     4201 atcaacccgt aacgagtgaa cttgaattaa ctgcatatga ggttgtttgg attaagaagg
     4261 cggtccaatg aaaatcgtca tcgcacctga ttcattcaaa gagagcgcca ctgctgttga
     4321 agtagcaaat gctataaaaa aaggctggac taaagcacgt ccagccgatc aaattagcct
     4381 tgcccctgtt tctgacgggg gtgagggttt tcttactgtt ttaagtgagt cttccgaggt
     4441 ggaattattt caagcagaag taaccaacct aaatggtcac aaaataacgg cctcctacgg
     4501 tattctcgct agccaagaaa ctgcgattat cgagtccgcc aacacgattg gattagattt
     4561 aatcccagcc gtagaccgta atccagctta cgcgagctct aaaggcgtcg gtgaacttat
     4621 tttggcggca ctgaatcaca acgtcaaaaa aatcattatc ggccttggtg gaagtggcac
     4681 aaacgatggc ggcgctgggc taatccaagc tttgggcgtt gcactacttg ataaaaacaa
     4741 acagcctatt ccgcccggtg gcattcattt gcaagaacta gcctacattg atgccagcaa
     4801 ccttaatcca aagctgaaaa acattcaatt ccaaatagcc tgcgacgtca cgaatccact
     4861 tcttggagaa aacggcgcta ccttcgtttt cggtgctcaa aaaggcgcaa ctcccgaaat
     4921 gctcgttcaa ctagagcgcg ccatgcagaa ctacggagca aaactcgatc aattttcatc
     4981 tcaaaaaatc actacaaaaa aaggagccgg agccgctggt ggtatcgctg ccggactaat
     5041 gactttccta aatacagacg tgttaagcgg ttcagctcta gttatggaac tttctaatat
     5101 gaaggataaa atgaaagatg cggatatcgt tattgttggt gaaggacgaa tggacaagca
     5161 atcgatgatg gggaaaatcc ctgttcaaat tgctcaagaa gctaaaaaac aaggttgttt
     5221 cgtcctagca atcgtcggta gccttgcact cgaaaacaat atcgcccaac aacacggtat
     5281 cgatgcgttt ttcccaaaca tcccagaaat aacagattta cccactcttt tcgaaaatac
     5341 aacaaagaac ctcgaacgca cggcggaaaa cattgccaaa ctaactttaa ttggcaaata
     5401 attttttaaa ctgttttcct tctaatcaat tcatgctcca ctttaattct ttgcaattta
     5461 ccttgttcaa aaatagtaaa agcattttct cccaattttt ttaggttatg atcaagcgtt
     5521 gtgatttcta aaaccttacc aattgggaga ttttcttgcc ctaaaatagc gacatcttcc
     5581 ggaacacgca agccgagttt tttcacgtga tacataaccc ctgccgcaac ctcgtcacca
     5641 ttcgcataaa tcgcatcagg ccagtctttc ccctctgcaa aaaaatgctc cccagccttc
     5701 aaaccatctt caagcgtata acattcactt agaaaccgat tatcacccac tgaaccaaaa
     5761 acttgctcat aagcattgat ttttccatat gtactcgtac tttcacgcga tgctctcccc
     5821 gctgtaaaag ccactttttt ataaccttca tcttccaaaa actgaaatcc agcccggtat
     5881 gctttcacgc ggtcaatata agagcacgat acctcttttg attccacata ctcgcacgca
     5941 ataatcggtc catacgctag gtacggcaaa atcacgtccc aattattggc acgcgaagta
     6001 ataatcaggc catccacctg tttcgtttta agacgcatca agtacttttc ttcttctttc
     6061 ggatcatatc ctgttggaaa aagcgtcacc gaataacggt ttttaaaagc tacttccaaa
     6121 ataccattta caattttgtc aaaccacggg tgatcattat aaggtataat cacgccaacc
     6181 gtatttgttt tcccacgcgc taaatccatg gcgctacggt taggtgaata atctaattca
     6241 tcaataacag cttgcacacg ggctcttttc tcctccacaa catacggatg gttattgagc
     6301 acacgtgaca ctgtcgtcac tgaaactctc gctaatttgg ctatttcttt aatatttggc
     6361 attttaaaaa cctcattcct aagaaaaaag tgcggacaga tttctcatac cgcactccta
     6421 tttttatcat taagccatct gttcaagttc gcttgtttgg atgtcttttt cgacacgaac
     6481 cgaaaccagt ctggcatcat tcatttcttc tactgtaaat cgaagtgtac cgtattctac
     6541 tactacttta tcatcttctt ctggaattgt cccagttaaa gtaagcacaa atccagccac
     6601 agtatctacg ccacgtgatg gaagttccac gtgaaacatt tcattgaaat catcaagcgg
     6661 catgcgacct tctacgataa atgtcgtctc atcaattttc ttcacttcat ccgaaaacac
     6721 atcattttca tcgtcaatct cgccaacaat ttcttctaat aaatcttcta cagtgacaat
     6781 accagcaaca ccaccgtatt catccattaa aatagccatt tgatttctag ttctttgcat
     6841 atttttaagt agatcgtcaa taaacatcgt ctcttgcgca aaatacgcgt ctttaacgag
     6901 cgccttcaca tcaatgtttt caaaacctga ctttctcgct tccgcaaaaa aatctttcat
     6961 atgcagaata cctagcaccg agtcctgatc gcctgtaaaa acgggaaccc ttgaaaaatt
     7021 ctcacttaat aatgcgtcac aaagttcttc cgactctgtt tcggcatcaa tcataaacgc
     7081 atctgttcgt ggcaccatca cttcacgcgc atatttatta tccatttcaa atacaccacg
     7141 aagcatttgt aattcttcta cctcaattac accgtcacgt cgaccggttt caatcagtag
     7201 ctgcatttcc tctcgcgtca ttttttcatt atccgtattt ttctccattc tcgttaattt
     7261 cacaagaata tcggttgaaa aagacaggaa tttcacgaac ggacgaagca caacaccaac
     7321 tgccatgatt ggtcgtacag aaacacgggc aattttttct gatttttgaa gtgctaaacg
     7381 ttttggataa agttcaccga aaactaacgt gatatatgat aacacaatag ttacgacgat
     7441 aatggataac tctttcgcaa aactacttcc tccaaaaaca gattcaagtc tagtcgcaat
     7501 actagtggca gctgacgcac tggagaaaaa tcccgcaagc gtaataccaa cttgaatagt
     7561 agctagaaat ttacttggat catctacgag tttagctagc ataaccgctt ttttatcacc
     7621 ggtttctgcc tggcttttta cacgattttt gttcaatgat acaagggcca tctctgctga
     7681 ggcaaagaat gcgttgagca tcgtcaacac cacaataaga attaactgca agataatctg
     7741 ctgactctcg gggtcagggt tcatatggaa ctctccactc cttattttca tcaagaaaac
     7801 gaccatgcat tttctctaaa tattccggac aatttgccgg ttaagaaaat tttatcacgc
     7861 cacccctatt actgcaaggt ttcaaatctc cgcgaaaact ttcacagcgt cactttccat
     7921 catttcaaat ggataaggaa gcgaaatctg ttctttattt acagcaaaaa tccgcgcttt
     7981 tttatttcga taatccgtta aattacaaaa cggactcacg cgaaaagatg tccctactat
     8041 cactatcaaa tccgcttgtc ttatagctgc aagagattga tctatcgcac tctctggaat
     8101 cgcttcttca taaagcacca catccggacg aatgacgcca ccacaacccg aatggatatc
     8161 cgatttcaag tactcctcag cggtaacaga cattccgcat ttttggcaat aacaatgata
     8221 taaactaccg tgaaaattta cgactttttt tgaacctgct ttttcatgca aaccatcaat
     8281 attttgcgta ataatcgtga catctttttc cgcttcgatt tcagccattt ttgtatgaat
     8341 cgcatttggc tctgcatccg gatagtacat gttttctgta acaaattgat aaaacttctc
     8401 cggttcacgc acaagacacg tatggctcaa catatattcc gggctactca tcccagcata
     8461 taagccgttt ttcgagcgat aatccggaat tccagaaggg acagaaacac ccgccccagt
     8521 tagaaaaacg atgtgttcag cttttttgag tgcttcattc aacttattca ttctttaaat
     8581 tcctttcatt tatatgttgt ttatctttcc agttccacca ttttcgcaaa tcaacatctt
     8641 gctccgcttc atccgtttcc gcaacataga ctgcgcagcg atacgtataa agtacacacg
     8701 gatccattct ctcgcctcgc ttatcgcaag tatcctcata taattcaagc ggattcttcc
     8761 cttttaaatc agcaacctct tcaaccccaa tttcatttaa cattaacacc atttttttac
     8821 ctattcctgg taattttatt agttcagttg gcatgatttc ccttctctcc gtgcattttt
     8881 cggttgaaat aaaaactgat tagtacattg ataaaaataa agcctgcaac tacgaggaag
     8941 acatctccgt aaccaaaatg ggcggcaaca cttgacccaa caagcggtcc gataacattc
     9001 ccaatgtatt gaaacgattg attataacca aaaatccgac ctgaaacctc gcgcggtgta
     9061 ttttttgtaa gcaatgattg aaccgctgga agcaaggcgc cgtctgtaag ccctaataag
     9121 aaacgtaaaa tccctagttg taatgggttt tgtgcgaaag ccattggaat ttggagtaac
     9181 attgaaccta tgagcgcacc taacaatatt cgctccgaac caattcggtc tccccatctc
     9241 ccaagtctcg gtgccgcaat aagcgccgca acccctggaa cagatgcaat catcccacta
     9301 ataaaagcga tgttttgcgc atttcctgcc aaatcacgca cgtataatgt caaaatcggg
     9361 ttcactgagt tggacgcaat ttgaatcatc attgtcgtaa taaataagga aataatcaag
     9421 cccgggtttt taagcgataa gaaaacttct ttccctgacc gcatttcctt tttttctact
     9481 ggtgtaaatt tctcttttac gaagaacagt gtgaggaaaa agctacctaa aagaagtgct
     9541 cctgtgatgt aaaacactgg tctgacgcca aatgtatccg acaacgctcc gccaattaac
     9601 gggccaatta gcacacccga aaccgccgcc gtagataatg ccccaagagc ccagccgcta
     9661 cgatgacgag gaacttgtgt agcaataagg gcatttgctg ttgaaatata tcctgaaaaa
     9721 atccccatta ataagcgcaa accaacaaat tggtatacat tgcttacgag tcccatcaga
     9781 atcatcgcta tcgccatacc tagcgcagct cgcaaaagca taattctccg ccctttttgg
     9841 tcagctagtt taccccaaat tggtgacata atagctgata ctaaaaaggt cgaactgagt
     9901 gcaatccctg accacatgct tacttgatcc ggattatgca ctcctaattc ttcaatatac
     9961 aatggtaaaa atggcatgat taaatttaat ccggttccgg ttagaaagca ccccacccag
    10021 acaacataca aattcttctt ccaattttcc ataaacccac ctagattctt ctatcgttat
    10081 ccttaattat tccacaaaaa aagcgaaagt aaaactaaac ccttcgcttt tttgctatat
    10141 ttgcgtaaaa tgtttcacgt ggaacatttt atgcttctaa atttcctcgt ggtacccaac
    10201 cagcttcatt ctcttctgtt acgcaccaaa cccaaccatt aagttcacga ttactttcta
    10261 atttatcgcc tggtttaaca tttaattcgc gcgcagagta gtcttctgat acggttccac
    10321 tctttccatc attactcaat tgaataattt gtttaggaac ccagccttct tttccggttg
    10381 acttcacttt acaaaaaatc cagcctggat attctgtatc ttcttcaaac acccaaatag
    10441 actcattttt attcacaaaa aggggatttg gatattgact aacatgttct tttttcacga
    10501 taaatgtttg attcatagtt agaaacctac ctctttattt tttcgccgct tcccaatctg
    10561 caagaaattt gtcaatccca ctgtcggtca acggatgttt tagcatttgt tcgaacactt
    10621 taaatggcac cgtagcaatg tcagctccgg ctttggcaca ttcaataacg tggattgggt
    10681 gtcgcacact tgctgaaata atttctgttg gaatcccgtg aatctcgaaa atatccgcaa
    10741 tgtcacgaat tagaactaag ccatcgtcgc ctatatcatc taatcgacct aaaaacggtg
    10801 atacgtatgt tgcgccagct cgtgctgcaa gcaaggcctg tgtggcagaa aacacaagtg
    10861 ttacattggt tttaatgcct tcttctgtca acacttttac agctgccaaa ccttcgcctg
    10921 tcatcggtat ctttacaacc atattcggat ggatttttgc aataactcga ccttccgcaa
    10981 tcatctcatc tgcttctaaa cttactactt cgccactaat cggtccgtca acaatggatg
    11041 tgatttcttg aatgacctca ttaaaatcgc gaccttcttt tgcaacaagt gatggatttg
    11101 tcgtgactcc ggcaatgaat cccattctgt tagccttttt aatctcttct acgttcgctg
    11161 tatcgataaa aaatctcatt aaaacatcct ccttttctat caagcgcttt caattacaga
    11221 gccattataa cgcaaaaatt taaataatgc ttttgaagtg cttttccaca aaaaaaaaga
    11281 atgccactga gcattccaaa aagtttcacg tgaaacaaaa ttataatcga gttttgtcca
    11341 tcactaggag aggctttggt ctatttctaa ttatatcctc tttaattaaa tgcatgactg
    11401 tatgagccac gtattctcgt gatgtatttg tgtatcttgc aagtacttct tgcgtgattt
    11461 ctcttggtaa caatatcccg ttatcagaaa acgttcctaa agtttgagcg catttgagaa
    11521 tggctttgcg gattcgttct tcctttttca agaagcttag ttttgcaaat gtatgggctt
    11581 cacgtaattc ttctgccatc actttaatca taaaaaagtt gttctcatct tttttgtcga
    11641 aaatagagaa caagaaattg ctatctactt ccataacttc tccgtgacct aagctctgca
    11701 tcgaaacatg cggactccat tcatcgtaaa aaagatgata tagtccaaaa ctatctcctt
    11761 tttgcaagaa acgaacaatg ctttctttat agctttcttc ttccatttct gcatcttcct
    11821 ctacaatcat cccgtatatg ccgcttagaa caaaatatac ttttgttcca gccggactta
    11881 aactttctag aacctcacct ttcttggtgc tgataaccga gcagtagtct ttgtaacttg
    11941 gatgttcaaa gcacaactcc attaatttgc taaccgttag attggattca agctctttta
    12001 agaatagcat attctctcct ttgctatatt atattg
//
LOCUS       DASEAA010000082        11141 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.082, whole genome shotgun sequence.
ACCESSION   DASEAA010000082 DASEAA010000000
VERSION     DASEAA010000082.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11141)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11141)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11141
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.082"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1205
                     /locus_tag="U0342_001773"
     CDS             <1..1205
                     /locus_tag="U0342_001773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="type VII secretion protein EsaA"
                     /protein_id="HEM2423118.1"
                     /translation="DRFVADYTKKIKAFEKRIDDYKNTMAEANSRSEDVTNRLNETTQ
                     EAINLNTNLALTLQNLESWREASKGLIEENGVVLEKSGEEATMALQLSSEFAGLLAES
                     ESLAGTSEGNLKSAEVVYKTFEAIDKEAKNIQQSGETLVKEASTLSDDLSEKLEDDET
                     FQKNFAKVMENSRVGDRQNENLYSFLSSPVDKMNAGTIVAGDKSMPYFMILICTILAI
                     FTSYVISHQEKKREQLNEFEKEMSLVFKNIPITFLAICVGIIEGLIIGAISGFIFEVG
                     EIGMFLWIGVCVLIMMTLVTAFSYLLRQFNMIGMSIILLVLSLYLFLTDAVGLNIDNE
                     SIFATFRTFSPLQYMEYLLNGILSAQKDYIIVVYSLIGAALLFTGLNLFVWHRSKEEV
                     EEDDSDEI"
     gene            1195..1710
                     /gene="essA"
                     /locus_tag="U0342_001774"
     CDS             1195..1710
                     /gene="essA"
                     /locus_tag="U0342_001774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssA"
                     /protein_id="HEM2423119.1"
                     /translation="MKFKIAALLMLLCFAFAPGVLAADSDSYLENNGKMDIKTDRLQK
                     TEEEKTKELEQMEETELDKNGIPLFTDEMDEKIAKEKAAEKAEYDRIKDSLFEEESTS
                     GETVKKTKEKLFTDEYETTAVNTETPTTTETTVEDETKKTKQKTVGGAIAGTLVALAG
                     GIYVAARNVFE"
     gene            1728..1979
                     /locus_tag="U0342_001775"
     CDS             1728..1979
                     /locus_tag="U0342_001775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463592.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EsaB/YukD family protein"
                     /protein_id="HEM2423120.1"
                     /translation="MAKNTHMNVTVDFTNWGASKYDLRIPVHQPIKALIINLAETLKI
                     DYKDLSKCTIKTTNKAILLSDDDKLTNFQIADGDILEIL"
     gene            2001..3197
                     /gene="essB"
                     /locus_tag="U0342_001776"
     CDS             2001..3197
                     /gene="essB"
                     /locus_tag="U0342_001776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463593.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssB"
                     /protein_id="HEM2423121.1"
                     /translation="MNKTIEMDGTTYDFTYEDLVWSITFPKSKTRAKELAQLELLEKP
                     ATHFTPAKISSDSDSYTISYEIAKRTYGFEQVRKMGREDKLRALRNIADLGELLNTRY
                     TFFLHPDNLIFDINLVPSIVHRGIKNILPPYELTEETFFKQYQCFVIAMFSKKFSFEN
                     LYNGSLSGARGTQFEKSILDAKTVQDIATILEEAYVKEHAAVQKNMASVPKKKYSTFR
                     GLAVGFIIVAILLAIPVSYFAFVKVPLQNDLLTANENFLKTDYDKVITGLENVDPEKM
                     PQSVQYELAYSYVKGEKMSDKKKENIMNTISLKSDAKNLLYWIYNGRGEFSKSLDIAK
                     LLDDPTLAMYSLTKQIEQVQSDTTLSGDEKVEKLKTLEESLKEYDEKVNESTTTEDET
                     TNTEAK"
     gene            3211..7707
                     /gene="essC"
                     /locus_tag="U0342_001777"
     CDS             3211..7707
                     /gene="essC"
                     /locus_tag="U0342_001777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EssC"
                     /protein_id="HEM2423122.1"
                     /translation="MNREALLIVSNGQQCHKNHLSPEKVVTIGNTIEHEITYPELAES
                     IEVKYDEGSWNAGTTALQANQAVNVENLAFYLCQDLHTQVYDVVTNISVTFGVGIEND
                     VTLDDTKSDFILLRDAKEKLFKLQVLNGEVYHNFSLVTEDCVLEPGDQLYTDGVTITI
                     GKEDISVLAVKNRVTSKLAPLFAADNSFGEDYPDYHRSPRIIYRAPEEKISMAKPSSK
                     PSKPTDGLIKIILPPLIMVAITVMISIFQPRGLYIIMTIAMSAVTITMAILNYIKSRK
                     KYKIDSKQRVESYDLYLKRKTKELHETSEKQRHALTYHYPDVTELEKMALRVDSRIYE
                     KTMFHHDFLTFRVGRGDEASSFSVEFQQEEFSQEKDELVEEAVKIKGQYLSINEVPVA
                     TDLMHGPVGYIGPRRLVLEQLQMLVMQTSLFHSYYDLQFITIFPEEEKADWDWMRWLP
                     HANMRDVNVRGFVYHERSRDQVLNSLYQILKERKQALTEQASKQEKLYFTPHYVVLIT
                     DEKLVLDHTVMEFFNEDPSELGVSLVFVQDVMESLPEHVKTVVDIRDAKSGNIILEQG
                     DLVNRAFVPDHLPADFDKEVISRALAPLNHLQNLKNSIPESVTFLEMYGVERVEELNI
                     AGRWAKNETYKSLAVPLGLRGKDDIVQLNLHEKAHGPHGLVAGTTGSGKSEIIQSYII
                     SLGVNFHPYEVAFLLIDYKGGGMANLFKNMPHLLGTITNLDGAQSMRALASIKAELQK
                     RQRLFGEHDVNHINQYQKLYKQGKATEPMPHLFLISDEFAELKSEQPEFMKELVSTAR
                     IGRSLGIHLILATQKPSGVVDDQIWSNSKFKLALKVQNASDSNEILKTPDAAEITLPG
                     RSYLQVGNNEIYELFQSAWSGADYVPDKESTDYIDTTIYAINDLGQYDILTEDLSGLD
                     KKDDLTKLPSELDAVIDHIHAYTEASGIKALPRPWLPPLPERIFAQDLHPVNFEEAWK
                     EPKKPLQATIGLLDQPELQAQVPLTLDLTKDGHVAVFSSPGFGKSTFLQSLVMDLARQ
                     HNPEQLHVYLLDFGTNGLLPLVDLPHIADTMMVDEVEKIQKFLRICLNEIKTRKKLLS
                     QYRVANIEQYERASGKELPNIIVVLDNYDAVKDAGLGDDFEKIITQITREGASIGMFM
                     IISASRHMSLRTQMATNIKQMIALYLIDKNDISSTVGRTDTPLEEYPGRALVKLETVT
                     TFQTTLPSHGEETIQQIEGIRNEAKLMREGWQGELPESVPMIPEKIKLADFCEWMETK
                     EVVANGNIPIGVDFEYVKPVGIDYKQTGVLIIADVIGRNLVSINKNVANSLVQNPNIS
                     LLISDTANFDLVEMSTKANLYSNNTEDLKQNMKKVLSIYQSRTEKADELRKAGDNLGV
                     TAMIQGLKDIVAFVGDYDILLKTLDEEDQKVLIDMINNGKTYGCYLILSGSIQAFKGY
                     GDLNKAVQAQRNYIFFDRLSNSSPFSFSFNIYREQELLPEEGYVIAGQEWQKIKIAKY
                     EEEV"
     gene            7713..8030
                     /locus_tag="U0342_001778"
     CDS             7713..8030
                     /locus_tag="U0342_001778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4176 domain-containing protein"
                     /protein_id="HEM2423123.1"
                     /translation="MLTKEILPIGSVVYLKESLKKVMITSRLITIQGDEEKEFYDYGG
                     VVYPEGTKDDNILAFDAEDITDVKFRGFVDDDEVVLVKRMREWQKEEFGVSPEEEDEM
                     LEL"
     gene            8020..8454
                     /locus_tag="U0342_001779"
     CDS             8020..8454
                     /locus_tag="U0342_001779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423124.1"
                     /translation="MNYDERVRVLIELKVDLSGKLEMMENEEALLCRQKHDFASAWSN
                     AKTEDAYRKLNEAVRKKIKETTEYAREIDEKITARIKRIEAAYKAEYQSNRSYTWRIA
                     EIDPIKFKEKYNERLNQLSYLSCDGSVKTRLIKEFRQNNFLK"
     gene            8466..8774
                     /locus_tag="U0342_001780"
     CDS             8466..8774
                     /locus_tag="U0342_001780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423125.1"
                     /translation="MVSPMPDKTVKMDKGSINPKLDKLISSLDNFDNINKKMGTIVGS
                     QEISGEAADALSESLLVLVSYGEQYSLVIRNLKEVIVDYCKSVEEIDKTAANAVSKGV
                     "
     gene            8793..9434
                     /locus_tag="U0342_001781"
     CDS             8793..9434
                     /locus_tag="U0342_001781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740356.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423126.1"
                     /translation="MKSRNWLKGLGVTMIVVTLILTGCGNGDAEKTDTKEQTKSVEEE
                     GKEVKIESNEGKPQHEQLITVKLPPEAEYLNDETLEVYEQDKKKYDQTEQLITNNSVT
                     ILLGDFCYYEPAWSSLTCSAILVNGTDTNIEDLSFKAEIMNKPMSGKIFSDDKVPELT
                     KAKTGKFQPNEGIPIILVFSEENPKNEENAEPQKINIKDIKVKIKDIQYKAVK"
     gene            9446..9760
                     /locus_tag="U0342_001782"
     CDS             9446..9760
                     /locus_tag="U0342_001782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin B"
                     /protein_id="HEM2423127.1"
                     /translation="MAKEIKVNPDFLKKVESNVTNYIDAQKEVSVELLAVRTNLASNF
                     SGIACDEIKNYITELMNDLEKEFGVFITRNHEKVKALGESYKELDGQLGQTFNYGMER
                     TK"
     gene            9757..10719
                     /locus_tag="U0342_001783"
     CDS             9757..10719
                     /locus_tag="U0342_001783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423128.1"
                     /translation="MSGKIKFNIAEAQNISLELKIAAGRYTQETEELLKVLKNNSLCD
                     KDQDVVEQRGRIEKNNQRLIEYEKFVNTNLAKSNSVIEELFMSVEVLYAQQVSEFRNP
                     NSAGYKELMGNVKAISYQKISQISGLGEMLTSKGSVGAIKDIRDTLLGTLVDDTYLKL
                     IDDTVEYQGENKNITDLYGDKISKVGSRRKKLDTPTKYLSTAYLISDTLKSFNSYGNS
                     KDSSRLAGDLTGIAITKGADFAVGKLATTALSGFGVSGVKGAIAGAIISVAADKIIDP
                     TVEYVKESKVEAKRDDWETKGIYKGWKKIRDLKLEYTMGNYQAS"
     gene            10823..>11141
                     /locus_tag="U0342_001784"
     CDS             10823..>11141
                     /locus_tag="U0342_001784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423129.1"
                     /translation="MYINLKSSDGNVITTKVGSCWTCVFLSFFGPLLRGDIKFFVLYV
                     ILDGAGLFITLNYDRDIGIAIMAMVTLLFESNYNTWFIRGKMNNGWEPETEKDREILL
                     EKGV"
BASE COUNT         4074 a         1730 c         2374 g         2963 t
ORIGIN      
        1 cagatcggtt tgtggcagat tatacgaaaa aaatcaaagc ttttgagaag cgaattgatg
       61 actacaaaaa tacaatggct gaggccaatt ccagatcaga agacgtaaca aatagattaa
      121 acgaaacgac gcaagaagct attaatttaa atacaaatct agcgttaacg ttgcaaaacc
      181 tagaatcttg gcgagaggca agcaaaggtt taatagaaga aaatggcgtt gttttagaaa
      241 aatctggcga agaagccacg atggcactgc aattaagctc cgagtttgcc gggcttttag
      301 cggaaagtga atcgttagct ggtacttctg aaggtaattt gaagtcagcg gaagtcgtgt
      361 acaaaacttt tgaagcgatt gataaggaag ccaaaaatat tcaacaaagc ggagaaactt
      421 tagtaaaaga agcatctaca ctatccgatg atttaagcga aaaattggaa gacgacgaaa
      481 cgttccagaa aaatttcgct aaggttatgg aaaatagccg tgttggtgat cgacaaaatg
      541 aaaatctata tagtttctta agtagtccgg tcgataagat gaatgctggg actattgttg
      601 cgggtgacaa atcaatgcca tacttcatga ttttgatttg tacgattctg gcaattttca
      661 ctagctacgt tatttcacac caagagaaaa aacgtgaaca attaaatgaa tttgagaaag
      721 aaatgtcgct tgtctttaaa aatattccaa ttactttcct agcgatttgt gttgggatta
      781 ttgaggggct cataataggc gccatttcag gatttatttt tgaagttgga gaaattggga
      841 tgttcctatg gataggtgtc tgcgttctaa ttatgatgac gttagttact gctttttcat
      901 atttattacg tcagttcaac atgattggga tgtcgattat tttactcgtt ttaagtttgt
      961 atctattctt aacggatgca gttggactta acattgataa tgaatctatt ttcgcgacgt
     1021 tcagaacgtt ctcgccactt caatacatgg aatacttatt gaatgggatt ttaagtgccc
     1081 agaaagatta cattattgtc gtatacagtt tgattggggc ggctctatta tttactggtc
     1141 tcaacctatt tgtctggcac cgttctaaag aagaagtaga ggaggacgat tcagatgaaa
     1201 tttaaaatag cagcactact tatgttactt tgttttgctt ttgctccggg agttctcgct
     1261 gcggattcag atagctattt agaaaacaat gggaaaatgg acatcaaaac agatagactt
     1321 caaaaaacag aagaagaaaa aacaaaagaa ctagaacaga tggaggaaac ggagctcgat
     1381 aagaacggaa ttccactttt tactgacgaa atggacgaaa aaatcgccaa agaaaaagcg
     1441 gcagagaaag cggaatatga ccggattaaa gactcacttt ttgaagagga atctacatct
     1501 ggtgaaacag tgaaaaaaac gaaagagaag ttgtttacag acgagtacga gacaacagct
     1561 gtaaacacgg aaacacctac tactacggaa acaacagtag aagatgaaac gaaaaaaaca
     1621 aaacaaaaaa cagttggtgg agcaattgca ggaacacttg tagctttagc aggcgggatt
     1681 tatgtggctg cgcgcaatgt ttttgaatag aaagcgggga gttttaaatg gctaaaaaca
     1741 cacatatgaa tgtgacagtt gatttcacta attggggagc aagcaagtat gatttgcgaa
     1801 ttccggtgca tcaaccaatc aaagcattaa ttatcaattt ggcagaaacg ctcaaaatcg
     1861 attacaaaga tttgtccaaa tgtacgataa aaacaacgaa taaagcgata ttactaagcg
     1921 atgatgacaa attgactaat tttcaaattg cggacggaga catcttagaa attttataga
     1981 aaaaaaggag aataaaaacg atgaataaga caattgaaat ggacggaaca acttacgatt
     2041 ttacttatga ggatctagtt tggagcatta cgtttccaaa atcaaaaaca cgcgctaaag
     2101 aactcgcaca actagaacta ttagaaaaac ctgcgacaca ttttactcct gcaaaaatct
     2161 caagtgatag cgattcgtat acaatttctt atgagattgc gaaacgtact tatggatttg
     2221 aacaagttcg aaaaatggga cgtgaagata aactgcgcgc actgcggaat attgcggatt
     2281 taggcgaatt gttaaacacg cgctatacat tctttttaca cccggataat ctgattttcg
     2341 atattaactt agtgccaagt attgttcatc ggggcattaa aaatatatta ccgccttatg
     2401 aactaacaga agaaactttt ttcaaacaat atcaatgttt cgttattgcg atgttttcta
     2461 agaaattctc ttttgaaaac ttgtacaatg gctcgctatc aggggctaga ggaacgcaat
     2521 ttgagaagag tatattagat gcaaaaacgg tgcaagatat tgctactatt ttagaagaag
     2581 catacgtgaa agaacatgcg gcggttcaaa aaaatatggc aagcgtaccg aagaaaaaat
     2641 acagtacttt ccgtgggttg gcggttggtt tcattatcgt cgctatttta cttgcaattc
     2701 cagtaagtta ttttgccttc gttaaagtcc ctctgcaaaa tgacttacta acggcaaacg
     2761 agaatttcct gaaaacagat tacgataaag tgattacagg tctagaaaat gtggatccag
     2821 aaaaaatgcc gcagtctgtc caatatgaat tagcttattc ctatgttaaa ggcgaaaaaa
     2881 tgagcgataa aaagaaagaa aacattatga atacaatcag cttaaaatct gacgccaaaa
     2941 acttacttta ctggatttac aatggtcgcg gagaatttag taaatcactt gatattgcca
     3001 aacttttaga cgacccaacg cttgcgatgt acagtttaac aaaacaaatt gaacaggtac
     3061 aaagtgatac aacattaagc ggcgatgaaa aagtggaaaa actaaaaact ttggaagaaa
     3121 gcttgaaaga atacgatgaa aaagtaaatg aatcaactac aactgaagat gaaacaacaa
     3181 atacagaagc aaaataaggg agaatggacc atgaatagag aggctttatt aattgttagt
     3241 aacgggcagc aatgtcataa aaaccacttg tctcctgaaa aagtcgtgac aattgggaat
     3301 acaatcgaac acgaaatcac ttatcctgaa ctggctgagt cgattgaagt taaatacgat
     3361 gaaggctctt ggaatgctgg aacaacagcg ctccaagcga atcaagctgt aaatgtagag
     3421 aacttagcat tctatctatg ccaagattta catacacaag tttatgatgt tgtaacgaat
     3481 atttctgtga catttggcgt tggaatagaa aatgatgtca cattagatga tacaaaatca
     3541 gattttatac ttttacgtga tgcaaaggaa aaactgttta agttacaagt cttaaatggc
     3601 gaagtttatc ataacttttc tctagtaacg gaagactgcg ttctagaacc gggtgatcag
     3661 ctctatacgg acggtgtgac gattacaatc ggaaaagaag atattagtgt gctagctgtg
     3721 aaaaatcgcg tgacgagcaa attagcgcct ttatttgctg cggacaattc gttcggggaa
     3781 gattatccgg attaccaccg ttcaccgcgg attatttacc gtgcgccaga agaaaaaatc
     3841 agcatggcga aaccgtcaag taaaccctca aaaccaacag atggcttaat taaaattatt
     3901 ttaccacccc ttatcatggt ggcaattacg gtcatgattt ccattttcca accacgtgga
     3961 ctttatatta ttatgacaat cgcaatgtca gcagtgacaa tcacaatggc gattcttaac
     4021 tacataaaat cacgtaaaaa atacaaaatc gattccaaac aacgcgtgga aagctacgat
     4081 ttgtatttaa aacgaaaaac gaaagaattg cacgaaacaa gcgaaaaaca gcgtcacgct
     4141 ttaacctatc actatccaga cgtaactgaa ctagaaaaaa tggcgttacg tgtggattcg
     4201 cggatttacg aaaaaacaat gttccatcat gatttcttga ctttccgagt tggtcgaggc
     4261 gacgaagcaa gtagcttttc cgtggaattc caacaggaag agttcagcca agaaaaagac
     4321 gaacttgtag aagaagctgt gaaaattaaa gggcaatatt tatcaatcaa tgaagtgcca
     4381 gttgcgacag atttaatgca cggaccagtg gggtatatcg ggccacgccg tttagtatta
     4441 gaacaactgc aaatgttagt aatgcaaaca tcccttttcc atagttatta tgatttgcaa
     4501 tttattacga ttttcccaga agaagagaag gcggattggg actggatgcg ctggctaccg
     4561 catgcgaata tgcgtgatgt gaatgtgcgt ggttttgttt accatgaacg ttcgcgcgac
     4621 caagtgttga actcgcttta tcaaatttta aaagagcgta aacaagcgct tactgaacaa
     4681 gcgagcaaac aggaaaaatt atactttacg ccacattatg tggttttaat taccgacgaa
     4741 aaattagtac tcgatcacac ggttatggaa ttcttcaatg aagatccaag cgaactaggt
     4801 gtttctttag tgttcgtaca ggacgtaatg gagagcttgc cagaacacgt gaaaacggtc
     4861 gtggatattc gtgatgcgaa gagcgggaac attattttgg aacaaggcga ccttgtaaac
     4921 cgagcgttcg tgccggatca tttgccagca gattttgaca aagaagtaat cagccgggct
     4981 cttgcgccgc taaaccatct tcaaaacttg aaaaactcga tcccagaatc cgttactttt
     5041 cttgaaatgt acggtgtaga gcgcgtcgaa gagttaaaca ttgctggacg ctgggcgaaa
     5101 aatgaaacgt ataagagcct tgctgtacca cttggcttgc gcggaaaaga cgatatcgtt
     5161 caactgaatt tacatgaaaa agcgcacggg ccgcatggtt tggtagccgg aacaactggt
     5221 tctggtaaat cagaaatcat tcagtcttac attatctcac ttggcgtcaa tttccaccca
     5281 tatgaagtcg cgttcttgct gattgactat aagggcggcg gtatggcgaa cttatttaaa
     5341 aatatgccac atttactggg aacaattaca aacttggacg gcgcgcaatc catgcgtgca
     5401 ctagcttcca tcaaagccga attgcagaaa aggcaacggt tatttggcga gcacgatgtt
     5461 aaccacatca accaatacca aaaactatac aaacaaggaa aagcgaccga accaatgccg
     5521 catttattcc ttatttcaga tgagttcgcc gagttgaaat cagaacaacc agaattcatg
     5581 aaagaacttg tttcgacagc acgtatcggg cgttcactcg gaatccattt aatcctagca
     5641 acccaaaaac caagtggcgt cgtggatgac caaatctggt ccaactccaa attcaaacta
     5701 gccctcaaag tacaaaacgc cagcgattca aacgaaattt tgaaaacacc agacgcagca
     5761 gaaatcacac taccaggccg ttcgtacttg caagttggta ataacgaaat ttacgaactg
     5821 ttccaaagtg cttggagtgg tgcggattac gtgccagata aggaaagcac ggattatatt
     5881 gatacgacga tttatgcgat taatgattta ggtcagtatg atattttgac agaggatttg
     5941 agcggattag ataagaagga tgatttgact aagttgccga gtgaacttga tgcggtgatt
     6001 gatcatattc atgcgtatac ggaggcttct gggattaagg cgttgccgag accttggttg
     6061 ccgccgctac ctgaacgaat tttcgcccaa gacttacatc cagtcaattt tgaagaagca
     6121 tggaaagaac cgaaaaaacc acttcaagca acaattggtt tactggatca acccgaatta
     6181 caagcacaag tcccattaac actcgattta acaaaagatg gacacgtggc tgtattctca
     6241 agtccagggt ttgggaaatc caccttcttg caaagtttag tgatggattt agctcgtcaa
     6301 cataatccag agcaactgca tgtttatttg ttggattttg ggacgaatgg gttgctacct
     6361 ctagtagatc tgccacatat tgctgataca atgatggtgg atgaagttga aaaaatacag
     6421 aaatttttac gaatctgcct aaatgaaata aaaacaagga agaagcttct tagccaatat
     6481 cgtgttgcaa atatagagca gtatgaaaga gcaagtggaa aagaactacc taatattatt
     6541 gttgttctag ataattacga cgctgtaaaa gatgcaggct taggggatga ttttgaaaaa
     6601 atcattactc aaattactcg tgaaggtgca tccattggaa tgtttatgat tattagcgca
     6661 tcaaggcata tgagtttgag aacacaaatg gctactaata ttaaacaaat gattgcttta
     6721 tatctaattg ataaaaatga tatatcatca actgttggtc gaacggatac accacttgaa
     6781 gagtatccag gaagagcgct tgtaaaatta gaaacagtta caacatttca aacgacgtta
     6841 ccatcgcacg gagaagaaac aattcaacag attgaaggta ttcgaaatga agcaaaatta
     6901 atgagagaag gttggcaagg agaacttcca gagagcgtac caatgattcc agaaaaaatt
     6961 aaactagctg atttttgtga atggatggaa actaaagagg tcgttgcaaa tggaaatata
     7021 cctatcggag ttgattttga atacgtaaaa ccagtaggca ttgattacaa gcaaaccgga
     7081 gtactaatta ttgcagatgt aattggacga aacttagtaa gcataaataa aaatgtagct
     7141 aattctcttg tgcaaaatcc aaatatttct ctcttaatta gcgacacagc gaattttgat
     7201 ttagtggaaa tgtctactaa agccaattta tacagtaaca acacagagga tttgaagcag
     7261 aatatgaaaa aagtactctc tatttatcaa tccagaactg aaaaagcaga tgaacttcga
     7321 aaagcaggag ataatttagg cgtaactgcc atgattcaag gattaaaaga tatagttgct
     7381 ttcgtaggag attacgatat cttactaaaa actcttgatg aagaagacca aaaagttcta
     7441 atagatatga ttaacaatgg aaaaacatat ggttgctatt taattttaag tggttcgatt
     7501 caagcattta aaggatatgg tgatttgaat aaagctgttc aagctcaaag aaactatata
     7561 ttctttgatc gactatcgaa ttcaagccca ttctccttct cgtttaatat ttatagagaa
     7621 caagaattat tacctgagga aggttatgta atagcaggac aagagtggca aaaaataaaa
     7681 attgcaaaat atgaagaaga ggtgtaagga aaatgctaac aaaagaaata ttacctattg
     7741 gaagcgttgt ttatttaaaa gaaagcctga agaaagttat gattacgagt agattaatta
     7801 caattcaggg agatgaagaa aaagaatttt atgattatgg aggtgtagtt tatccagaag
     7861 ggacaaagga tgacaatatt ttggcatttg atgcagaaga tataacagat gtgaagttta
     7921 gaggttttgt agatgatgat gaggtagtct tggtgaagag aatgagagaa tggcagaaag
     7981 aagaatttgg tgtttctcca gaagaggagg atgagatgct tgaattatga tgaacgtgta
     8041 cgagttttaa ttgagttgaa ggttgatttg tccgggaaat tagaaatgat ggaaaatgaa
     8101 gaagcgttat tatgtagaca aaaacatgat tttgcaagtg cctggtcaaa tgcaaaaaca
     8161 gaggatgctt acagaaaatt aaatgaagca gttagaaaga aaatcaaaga aacaacggaa
     8221 tatgcaagag aaattgatga aaaaattact gctcgtatca aacgaattga agcagcatat
     8281 aaagcagaat atcagagtaa taggagctat acatggcgta ttgcagaaat cgatccaatt
     8341 aaatttaaag aaaagtataa tgaaagatta aatcagttaa gctacttatc atgtgatggc
     8401 agtgtaaaaa cacgtttaat aaaagagttt cggcaaaata atttcctgaa ataggaggat
     8461 gaaatatggt aagtccaatg ccagataaaa cagtaaaaat ggataaagga agtattaatc
     8521 ctaaattaga taaactaatt tcaagtctag acaattttga taatatcaat aagaaaatgg
     8581 gcactatagt aggtagccag gagattagtg gggaagcagc agatgcttta tctgagagcc
     8641 tattagtgct agtaagttat ggggaacaat atagtttagt aattagaaac ctaaaagaag
     8701 tgatagtcga ctattgtaaa agtgtggaag aaattgataa aacagcagca aacgcagtaa
     8761 gtaaaggcgt ttaaaaagaa agaggttaaa ctatgaaaag tagaaattgg ttaaaaggat
     8821 tgggagtaac aatgattgtc gttactttaa ttttaacggg atgcggaaat ggagacgctg
     8881 aaaagacaga tacaaaggaa cagactaaaa gtgttgaaga agaaggaaaa gaagtaaaga
     8941 ttgagagtaa tgaagggaag ccacagcatg aacaacttat aacagtgaag ttgccgccag
     9001 aagcagagta tttaaatgat gaaacgttag aagtgtatga gcaagataaa aagaagtatg
     9061 accagacaga gcaactaatt actaataact cagttacaat tctattaggt gatttttgct
     9121 attatgagcc ggcatggagc agtcttacat gttctgcaat tcttgtgaat ggaactgaca
     9181 caaatattga agaccttagc ttcaaagctg aaataatgaa taagccaatg tcaggaaaaa
     9241 ttttttcaga tgacaaagtt ccagaactta caaaagcaaa aacaggaaaa ttccagccaa
     9301 acgagggtat accaattatt ttagttttct cagaagagaa cccgaaaaat gaggaaaatg
     9361 cggagcctca aaaaattaac attaaagata taaaggttaa gataaaggat attcaatata
     9421 aagcagttaa ataggaggga gaaagatggc aaaagaaatt aaggtaaatc cagatttttt
     9481 gaagaaggtt gaaagcaatg taacaaatta cattgatgcc cagaaagagg tttctgttga
     9541 attactagca gttaggacca acttagcaag taatttttca ggtattgctt gcgacgaaat
     9601 aaaaaattat ataacagaat taatgaatga tctagaaaaa gaatttggtg tatttattac
     9661 aaggaatcat gaaaaagtta aggcgttagg ggaaagttat aaagaacttg atggtcagtt
     9721 gggacaaacc tttaactatg gaatggagag gactaaatga gcggaaaaat aaaattcaat
     9781 atcgccgaag ctcaaaatat tagtcttgag ctgaaaattg cagcaggtag gtatacgcaa
     9841 gaaacagaag agctattaaa agtgctgaaa aataatagtt tatgtgataa agaccaagat
     9901 gtcgttgaac agagggggcg aatagagaag aataaccaaa gacttataga atatgagaaa
     9961 tttgtaaaca caaatctcgc taaatctaat tcagttatag aagaattgtt tatgagtgta
    10021 gaagtattgt atgcacagca agtttctgag tttagaaacc ctaattctgc gggttataaa
    10081 gaattaatgg gaaatgtgaa agcgatatca tatcaaaaaa tttcacagat ttcaggattg
    10141 ggagaaatgc ttacatcgaa aggttcggtg ggagcaatta aagatatcag agacacacta
    10201 cttggaacat tggtagatga tacttacttg aaattaattg atgatacagt tgaatatcaa
    10261 ggagaaaata aaaatataac tgatttatat ggggataaaa tatctaaagt ggggtcaagg
    10321 agaaaaaaat tggacactcc aaccaaatac ctttcaacag cctacctcat ctcagacacg
    10381 ctaaaaagtt ttaacagtta tggaaatagc aaagattcct ctcgacttgc aggagatcta
    10441 accggtatag caataacaaa aggtgcggat tttgctgttg ggaaattagc tactacggca
    10501 ttatctggtt ttggtgtaag tggtgttaaa ggcgctatcg caggcgccat tatttccgtt
    10561 gctgcagata aaattattga tccgacggtt gaatatgtta aagagagcaa ggtagaagca
    10621 aagagggatg actgggaaac aaaaggtata tataaaggct ggaaaaaaat tcgagattta
    10681 aaactagaat atacaatggg taactatcaa gcaagttaac agttaaaaat ataagatttt
    10741 ttacctaata aaaatgacag cagtatctat atgagactac taacaacttc accatgtgcg
    10801 ttacaaataa aaggaggaaa aaatgtatat taatttaaaa tccagtgatg gaaatgtgat
    10861 tacaacaaaa gttggttctt gctggacctg tgtatttctt tcgttctttg gtcctttact
    10921 ccgaggagat attaaattct tcgttcttta tgtaatatta gatggagcgg ggcttttcat
    10981 cactttgaat tatgatagag atatcggaat agctatcatg gctatggtaa ctttactctt
    11041 tgaatccaat tataatacat ggtttatccg cgggaagatg aacaacgggt gggaaccaga
    11101 aacagagaaa gatcgagaaa tattgttaga aaaaggcgtc a
//
LOCUS       DASEAA010000083        11118 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.083, whole genome shotgun sequence.
ACCESSION   DASEAA010000083 DASEAA010000000
VERSION     DASEAA010000083.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11118)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11118)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11118
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.083"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            130..1311
                     /locus_tag="U0342_001785"
     CDS             130..1311
                     /locus_tag="U0342_001785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463817.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2423130.1"
                     /translation="MKISKRLQNLPDQFFSSLVEKVGKKVAEGHDVINLGQGNPDQPT
                     PKHIVEAMKTASEKPLNHKYSLFRGKHELKQAAADFYAREYNVTIDPNTEVAILFGTK
                     TGLVELPMCLMDPGDTMLLPDPGYPDYLSGVVLGEVQFEKMPLIAANNFLPDFTKIPE
                     DIAEKAELMYLNYPNNPTGAVATADFFEETVAFAKNHNIVVAHDFAYGGIGFDGKKPI
                     SFLEANGAKEVGIELYTLSKTYNMAGWRVGFAVGNSEVIEAINLIQDHMYVSLFPGIQ
                     DAAIEALTGDQTCVGELTARYESRRDAFISACKKIGWEAVAPAGSFFAWMPVPENFTS
                     SEFADYLLEEVSVAVADGSGFGEFGEGYVRVGLLMDEERLEEAVTRVSKLHLFDKVTQ
                     Q"
     gene            1524..2237
                     /locus_tag="U0342_001786"
     CDS             1524..2237
                     /locus_tag="U0342_001786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2423131.1"
                     /translation="MAEKKILVVDDEKPIADIVKFNLNKEGFDVYCAYDGDEALELVE
                     EVQPDLILLDIMLPGRDGIEVCREVRKKYDMPIIMVTAKDSEIDKVIGLELGADDYVT
                     KPFSNRELIARVKANLRRHSQVSSNAAEEEENSELEIGSLIIHPDAYVASKRGETIEL
                     THREFELLHYLAKHMGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIEDNPSHP
                     AWLVTRRGVGYYLRNPEQE"
     gene            2422..4254
                     /gene="walK"
                     /locus_tag="U0342_001787"
     CDS             2422..4254
                     /gene="walK"
                     /locus_tag="U0342_001787"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463819.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall metabolism sensor histidine kinase
                     WalK"
                     /protein_id="HEM2423132.1"
                     /translation="MHKMRFFQSVQFKLVIMYLLLIIVAMQVIGAYFVRELEGQLEKN
                     FQDSITNSITLLDYNAREEIIKNSDNSVKLQNDIRELLVDYSRASSNLIEVRIVDDKG
                     KILGTSNLNNQGIVGQKSNDPLVKRTLSLGTTSEDKIYKDESNKNNRVWVNVSSIKNK
                     GQVIGAIYLVADIESVYKQVDDITNIFITGTLIAMIITAVLGILLSRTITKPIIEMKR
                     QAYAMARGNYSRKVKVYGVDEIGELADSFNTLTKRVQEAQAMTEGERRKLSSVLAYMT
                     DGVIATDRRGKVILINTPAEKMLRVKHESANGRSIIDVLDIGDTYQFEDLMEVDGSLT
                     MDRSTLDKPYVLRANFSVIQRETGFNNGVIAVLHDITDQEKVDQERRDFVSNVSHELR
                     TPLTSMHSYLEALSDGAWEDKEIAPRFLEVTQNETERMIRLVNDLLKLSRMDGGREQL
                     EKSFVNFTDFFNHIIDRFEMMKKETIMFKRHIPREPVIIEIDEDKVMQVLDNIISNAN
                     KYSPDGGRISFYLKKFEDEIEVSIADEGLGVPDEDLANVFDRFFRVDKARSREMGGTG
                     LGLAIAREVIEAHGGRIWAERNKTKGTIIKFTLPYSDLPEDDWE"
     gene            4251..5573
                     /locus_tag="U0342_001788"
     CDS             4251..5573
                     /locus_tag="U0342_001788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463820.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2423133.1"
                     /translation="MMKKTGFRSFILTILVVLSIVLSYFIWKGQPDYEAINVKEVEKT
                     TIDKTMTTSQVFKPYKLAVNANENNYQSLDADLLNELMAQGKAFSFSEVVLASKKSSE
                     DYEKLIHKNGTIEIIFPNNIPFSIFAQIFQVEGEGLESAFFNRIVFDINKTDTGLHSV
                     YFTNDDQENIYQSSLQNKDIDKIEKIVKKNESKLTQNDKLISNKRNLFLSSEKTKLNR
                     KKYIIDSLEINLFTSALFQDSGTVKSEGNTYTDGSSVIEMDTDNKVLEYVNPSQERTN
                     PEDLSSVKRAGLIQDSFNFVNDHAGWTGDGAYYFTGYAAESATTNFSLFIDNLQVYNE
                     NGMADISVTEGLEAVYKYMRPFFRLDTDVPGEKKEVTLPSSYSVYSALAQNPNVKAEE
                     IEDIVPGYHMTRSESSGMNRLVTLEPTWLYKYHDKWFIFQPDAEKAGE"
     gene            5576..6415
                     /locus_tag="U0342_001789"
     CDS             5576..6415
                     /locus_tag="U0342_001789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463821.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system regulatory protein YycI"
                     /protein_id="HEM2423134.1"
                     /translation="MDWRKTQMIFIVTLLILNVFLAVIFFNKQLSDDPDTLGNETLEE
                     RLKADNISHPDLSTKPTSGSIFTTERAAFTTKDVSDLTGQAITLKDNNKQIYSVLQTP
                     VKAGKKGSNPEFQKFMESDVYRGESYQFWNYDKDARTLTFNQLINNNMVLFDEAGQIT
                     FYLDQDDRVISYEQTWMSKQDDLKDKTNLMSATDALEAVYQHGELKQDSDVVSATFGY
                     YTTVQLPSGNVYFPVWCFEVKHSGETNYVLVNAKDEQVINQSDNKSTTEPGTELSSRQ
                     KTK"
     gene            6535..7365
                     /locus_tag="U0342_001790"
     CDS             6535..7365
                     /locus_tag="U0342_001790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463822.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2423135.1"
                     /translation="MFANKILTEKDTDQIRFSILASGSSGNATLVETGDQKILIDCGL
                     SGKKMEGLFAQVGRDMNDLDAILITHEHSDHIKGLGVLARKYKLPIYANAKTWKAMDN
                     MIGEVSSDQKFQFDMETVKTFGSMQVESFGVSHDAIEPMFYIFHKGNKKFVMITDTGY
                     VSDRMKGHIAGADAYLFESNHDVEMLRMGRYPWNVKRRILGDEGHVSNEDAAIAMSEV
                     ITDQTKRIYLGHLSKDNNMKELARMSVTQTLMAEGIDVGGKLEIFDTDPDNATSIFTI
                     "
     gene            7463..8965
                     /gene="htrA"
                     /locus_tag="U0342_001791"
     CDS             7463..8965
                     /gene="htrA"
                     /locus_tag="U0342_001791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463823.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease HtrA"
                     /protein_id="HEM2423136.1"
                     /translation="MDEKEKNLNENSENESTPKREVEDTLHTPESAQPVQETPIVEGV
                     TPEGEKFAGATEDAAEASSTNAFFEEASNKEPEPARPAPGPRRAGTTGGGAVPPNRVN
                     NGGSGNGNGEPPKRGKHFIGYFLTALIGVIIGGLIIFFVAWDNGDNADTTSNSNNKAT
                     KVEKVSVDTTSDVTKAVDKVQDAVVSVLNYQSSSSLDGTTTSEQEASSGSGVIYKKAN
                     GKAYIVTNNHVVADANKLEVTFTNGKKSEAKLLGTDEWNDLAVLEIDDKNVTTVAAFG
                     DSDSLKLGEPAIAIGSPLGTEFSGSVTQGIISGLNRAVPVDTNGDGTEDWEADVIQTD
                     AAINPGNSGGALINIEGQVIGINSMKISMENVEGISFAIPSNTVEPIIEQLETKGEVE
                     RPSLGVSLRDVDTIPETQQKNILKLPDSVDYGAMVQQVVSGSAADKAGLKQYDVIVEL
                     NGQKVTNSMTLRKILYGNDVKIGDKVKVKYYRDGKEKSTDIKLEAAKTTT"
     gene            9653..10132
                     /gene="rlmH"
                     /locus_tag="U0342_001792"
     CDS             9653..10132
                     /gene="rlmH"
                     /locus_tag="U0342_001792"
                     /EC_number="2.1.1.177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463824.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA
                     (pseudouridine(1915)-N(3))-methyltransferase RlmH"
                     /protein_id="HEM2423137.1"
                     /translation="MNIQIVTVGKLKEKYLVQGIAEYLKRLSAFAKVTIVEVPDEKAP
                     EVLSDAEMKQVKDKEGARILAKIPDDAHVIALAIDGKMKSSEEFAADLDKLATYGKSK
                     VTFVIGGSLGLSEAVLKRSNERISFGRLTLPHQLMRLVLVEQVYRAFRIVRGEPYHK"
     gene            complement(10164..11027)
                     /locus_tag="U0342_001793"
     CDS             complement(10164..11027)
                     /locus_tag="U0342_001793"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2423138.1"
                     /translation="MDIENMKAFNKVAELKSISAAANELHHLQSNMSNKIKNIEKQFQ
                     TQLFFRHSNGVEPTKEGEKIYQQFKKMILLWEETIDIINNEEETISIGITQSSLPMEF
                     NTIIKEFYQQFPNKKLSIVSGSTSELIPKIANRELTIAYVAELEKENLFQDSQIISQT
                     LSWDKLVFAGNTAGKSVQKILAEERLYVFSKQCYSYRALAALINDINIPNVSISEINI
                     PETLVEICNNELGIGIIPESIALNYHFLNYETLPTEYASLRKTLIYHADHTISNGEKW
                     LIEKSKPAFKS"
BASE COUNT         3755 a         1817 c         2365 g         3181 t
ORIGIN      
        1 agttaaaaat atacgcacat taccttaatt tgtcaatgct tttttaagtt ttaaaaaaat
       61 catactggac aaatacttca gaaaacttta ctattttaat caatgaaact tgaaaaggac
      121 gggtgtaaaa tgaaaatttc caaacgcttg caaaatttac cagatcagtt tttctctagc
      181 cttgttgaaa aagttggaaa aaaggtggca gaagggcatg atgtcattaa tttaggacaa
      241 ggaaacccag accagccaac acccaaacat attgtggaag cgatgaaaac agcttcagaa
      301 aaaccactta accacaaata ttctttattt cgaggaaaac acgaactaaa acaagccgct
      361 gcggattttt acgcgcgtga atataatgta acaattgatc caaacacgga agtagctatt
      421 ttgtttggga caaaaacagg cttagtggag ctgccgatgt gtttgatgga tccaggtgat
      481 acgatgcttt tacctgatcc gggctatcct gattatttgt caggagtagt gttaggtgaa
      541 gttcaatttg aaaaaatgcc gcttattgcc gcaaataatt ttttaccaga tttcactaaa
      601 attccagaag acatagctga aaaagctgaa ttaatgtatt taaattatcc taataatcca
      661 actggcgctg tggctacggc agatttcttt gaagaaacag tcgcttttgc caagaatcat
      721 aatatcgttg ttgcgcacga tttcgcatat ggaggtattg gctttgacgg taaaaaacca
      781 attagttttt tagaagcaaa cggtgcaaaa gaagttggaa ttgaacttta tacactttcg
      841 aaaacatata atatggctgg ctggcgcgtt ggttttgcag ttgggaacag cgaagttatt
      901 gaagctatta atcttattca agatcatatg tatgtaagtc tttttccagg gattcaagat
      961 gctgcaatcg aagctttaac aggagatcag acttgtgtgg gtgaattaac cgctcgttat
     1021 gaaagtcgca gggatgcctt tatttctgct tgtaagaaaa ttggttggga ggcagttgcg
     1081 ccggcgggtt cgttctttgc ttggatgcca gtcccggaaa attttacaag tagcgaattt
     1141 gctgattatc tgctagaaga ggtcagtgtt gccgttgcgg atggtagtgg ctttggggag
     1201 tttggtgaag gttacgtccg cgtaggtctt ttaatggatg aagagcgctt ggaagaagca
     1261 gtaacgcgag tttccaaatt gcatttgttc gataaagtta cacagcagta gccaatttat
     1321 ccaattttaa gagaaaatcg cttgtaataa ttcagataat taatgggatg tgttataatt
     1381 ggttagtaag tctattctta gcatgttgtt ttatgaaggc aggccagaat ttaaaatgtt
     1441 tagtgagatt tttatgcatt aaataaaaag tatctgtccc ggttaaagcc ggcgaaatcc
     1501 aggaatgaga ggactgtaaa aaaatggcag aaaagaaaat tcttgtagta gatgacgaaa
     1561 aaccgattgc ggatatagtt aagtttaatc taaataaaga aggctttgat gtatattgcg
     1621 cctatgatgg cgatgaagcg ttagaacttg tagaagaagt tcagccagat ttaattttac
     1681 tggatattat gcttccaggt cgtgatggta ttgaggtatg tcgtgaagta cgtaaaaaat
     1741 atgatatgcc aataattatg gtaacagcga aagattcaga gattgacaaa gttatcggac
     1801 tagaacttgg tgcagatgac tacgtaacga aaccatttag taatcgcgag ttaattgctc
     1861 gagtgaaagc caatttgcgc cgtcacagcc aagtcagctc aaatgcagcc gaggaagaag
     1921 aaaacagcga actagaaatt ggttctttga ttattcatcc ggatgcatat gtggcttcta
     1981 aacgtggaga aacaatcgaa ctaacacatc gtgaattcga attactacat tatttagcaa
     2041 aacatatggg acaagtcatg acacgtgaac atttacttca aaccgtttgg ggctatgact
     2101 acttcggcga tgttcgtacg gtggatgtta ccgttcgtcg tttacgtgag aaaattgaag
     2161 ataacccaag tcacccagca tggttagtaa ctagacgcgg agttggctat tatttacgca
     2221 atccagaaca agaataaata acaagaagtg gtcgccgaag tgaaaaaaat tcggtgacca
     2281 ctttttttgg gtattttcgc ttacttaggt actattttta taaataaatc gacccaatta
     2341 acaggaaaaa caatacgtct acaccataac atatggtata ctaatttaaa tatattaccc
     2401 cgaataggag tagaaagact tatgcataaa atgagatttt ttcagtccgt acaatttaag
     2461 ttagttatta tgtatttgct actaattatc gttgcaatgc aagtaatcgg cgcgtatttt
     2521 gtacgtgagc tggaagggca actggagaaa aattttcaag attctattac gaatagtatt
     2581 acgcttttag attataacgc tagagaagaa attattaaaa atagcgacaa ctccgtcaag
     2641 ttacaaaatg atattagaga actcttagtc gattattctc gcgcaagtag caatttaatc
     2701 gaagtaagaa ttgtagatga caaaggaaaa attctcggca catctaattt aaataaccaa
     2761 ggaattgttg gacaaaaaag caacgatcca cttgtaaaac gaacattatc acttggaacg
     2821 acttctgagg acaaaatcta taaagacgaa tcgaataaaa ataaccgcgt ttgggtgaac
     2881 gtatcctcca tcaaaaataa aggccaagtg ataggggcta tttatcttgt cgccgatatc
     2941 gaaagtgtct ataaacaagt tgatgatatt acaaacattt tcatcacagg gactttgatt
     3001 gcgatgatta ttacagccgt ccttggaatt ctattatcaa gaaccattac taaaccaatt
     3061 atcgaaatga aacgtcaagc ttatgcgatg gctcgcggca actatagccg caaagttaaa
     3121 gtatacggtg tcgatgaaat tggtgaactg gctgattctt ttaatacact aacaaaacga
     3181 gtccaagaag cccaagcaat gactgaaggg gagcgacgca agttatcctc tgtactcgca
     3241 tatatgactg atggcgtaat tgcaacagac cgtcgcggga aagtaattct cattaatacg
     3301 ccagcagaaa aaatgcttcg cgtgaaacat gaaagtgcga atgggcgctc gattattgat
     3361 gttttagaca tcggagacac gtaccaattt gaagatttaa tggaagtaga tgggtcacta
     3421 acaatggacc gtagtactct cgacaaaccg tacgtgcttc gtgccaattt ctcggtcatt
     3481 caaagggaaa caggctttaa taatggggtt atcgcggtac ttcacgatat taccgatcaa
     3541 gaaaaagtcg accaagaacg tcgcgatttc gtatccaatg tatcacatga actaagaacc
     3601 ccacttacca gtatgcatag ctatttagaa gcattaagcg acggcgcgtg ggaagataaa
     3661 gaaatcgctc cacgtttcct tgaagtaacg caaaatgaga ccgaacgaat gattcgtctc
     3721 gttaacgatc tcctcaaact ttccagaatg gatggcggca gagaacaact cgaaaaaagc
     3781 ttcgtgaact ttacggattt ctttaaccat attattgacc gttttgaaat gatgaaaaaa
     3841 gaaacaatca tgttcaaacg ccatattcca agagagccag tcatcatcga aattgatgaa
     3901 gataaagtaa tgcaagtgct tgataatatt atttctaacg ccaataaata ttcaccggat
     3961 ggtggccgta tttccttcta tctgaaaaaa tttgaagatg aaattgaagt aagcattgcc
     4021 gatgaaggtt taggcgtacc agacgaggat ttagcaaatg tgttcgaccg attcttccgt
     4081 gtagacaaag cacgctcgcg agaaatggga ggaacagggt taggactcgc tattgctcga
     4141 gaagttatcg aagcacatgg tggtcgaatt tgggccgaac gtaataaaac caaaggaacc
     4201 ataattaaat ttaccctgcc atacagtgac ttaccggagg atgattggga atgatgaaaa
     4261 aaacaggatt tcgctcattt atactaacca ttttagtcgt actcagtatt gtcctaagct
     4321 actttatttg gaagggacaa cctgattacg aagcaattaa cgtaaaagaa gtggaaaaaa
     4381 caaccattga caagacaatg acaacatcgc aagtattcaa accatacaag ctggctgtaa
     4441 atgcaaatga aaataattac caaagtttag atgctgattt attaaacgaa ctaatggcac
     4501 aaggtaaagc ctttagtttc tcggaagtag tattagctag taaaaaaagt agtgaagact
     4561 atgagaaatt aatccataaa aacggaacta tcgagattat tttccccaat aatattccgt
     4621 tctctatctt tgctcaaatt tttcaagtag aaggggaagg gcttgagtca gcgttcttta
     4681 atcgaattgt ttttgatatt aacaaaacgg atactgggct acattcggtt tatttcacaa
     4741 atgacgatca agaaaatatt taccaaagtt ctttgcaaaa taaagacatt gataaaatcg
     4801 aaaaaattgt taaaaagaac gaaagcaagc tgactcaaaa tgataagcta atttcaaaca
     4861 aacgcaatct ttttctaagc tctgaaaaaa cgaaactaaa tcgcaaaaaa tatatcatcg
     4921 attcgcttga aattaattta ttcacgtccg cactattcca agattctggt actgttaaaa
     4981 gtgaaggaaa cacatacaca gatggttcaa gtgtcattga aatggataca gataataaag
     5041 tattagagta tgtaaatcca tcacaagaac gtactaatcc agaagatctc agtagtgtca
     5101 aacgagctgg acttattcaa gatagtttta actttgtgaa cgaccatgct ggctggactg
     5161 gcgacggcgc ttactatttc acaggttatg ccgcggaaag tgcgacgact aatttcagtt
     5221 tattcatcga taatttacaa gtatacaatg agaatggcat ggcggatatt tctgtaacag
     5281 aaggacttga agctgtttat aaatacatga gaccattttt ccgcttagat acagatgttc
     5341 ccggagagaa aaaagaagtt acgttaccat cctcttattc tgtctatagt gctcttgccc
     5401 aaaatcctaa cgtcaaagca gaagaaattg aagatattgt tcctggctat catatgacta
     5461 gaagcgaatc ttcgggcatg aatcgtcttg taacattaga gccgacgtgg ttgtataagt
     5521 atcatgacaa atggttcatc ttccaaccag acgcagaaaa ggcgggtgaa taaaaatgga
     5581 ttggcgtaaa acacaaatga tttttattgt gactctcctc attcttaatg tttttttagc
     5641 ggtaatattt ttcaacaagc agttatcaga tgacccagat acactcggaa atgaaacgct
     5701 agaagaacga ttaaaagcag ataatatctc tcatcctgat ttatcgacca aacctactag
     5761 cggctctatt ttcactacag agcgagcagc ttttacaaca aaagatgtga gcgatcttac
     5821 agggcaagcc attacgctta aagataacaa taaacaaatc tattctgtct tacaaactcc
     5881 cgtaaaagct ggcaaaaaag gtagtaaccc agaatttcaa aaatttatgg aatcagatgt
     5941 ttatcgcggg gaatcctatc aattttggaa ttatgacaaa gatgctcgga ccctcacttt
     6001 taatcaatta attaataata atatggtttt atttgatgaa gcgggccaaa ttacttttta
     6061 tttagatcaa gatgaccgag tgatctcata cgagcaaact tggatgtcta agcaagatga
     6121 tttaaaagat aaaaccaatt taatgtccgc aacagatgca ttagaagcgg tttatcagca
     6181 cggagaattg aagcaagaca gcgacgtggt ttctgcaaca tttggctatt acacgacagt
     6241 acagctaccc tctggaaatg tatacttccc cgtttggtgt tttgaagtaa aacattctgg
     6301 tgaaactaat tatgtcctcg taaatgccaa agacgaacaa gtaattaatc aatcagacaa
     6361 caaatcaacc accgagccag gtacagaatt atcgagccgt cagaaaacca aataaaaaat
     6421 gagtcaacct aattatcatg aaaaattagg ttggcttttt caaacgatag ggcatgcaat
     6481 tttgccgaat tagcgttaca atgaaagata tataagcctt tagggggata aaaaatgttc
     6541 gcaaataaaa ttttaacgga aaaagatacg gatcaaatcc gatttagtat attagccagt
     6601 ggaagctcag ggaatgccac acttgtcgaa acaggagacc aaaaaattct gatcgattgt
     6661 ggtttgagtg gaaagaaaat ggaaggatta ttcgcgcaag ttggtcgtga tatgaacgat
     6721 ttagacgcga ttctaattac tcatgaacat tcagatcata ttaaaggtct tggtgtgctt
     6781 gctcggaaat acaaactccc tatttatgct aacgcgaaaa cgtggaaagc aatggataat
     6841 atgattggcg aagtgtcttc agatcaaaaa ttccaatttg atatggaaac agtaaaaacc
     6901 tttggtagca tgcaagtgga atcctttgga gtctctcatg atgcaattga gccgatgttt
     6961 tacatatttc ataaagggaa taaaaaattt gtaatgataa cggacactgg ttatgtaagc
     7021 gaccgaatga aaggtcatat tgcgggggct gatgcttatc tttttgaaag taatcatgat
     7081 gtagaaatgc ttcgaatggg acgctatccg tggaatgtaa aacgcagaat tcttggtgac
     7141 gagggacacg tgagcaatga ggacgctgca atagcaatga gcgaagtcat taccgatcaa
     7201 acaaaacgaa tttatttggg acaccttagt aaagacaaca atatgaaaga acttgcgaga
     7261 atgagcgtaa cacaaacact tatggcagaa ggtattgatg ttgggggtaa actagaaatt
     7321 tttgacacag accctgataa tgctacatct atctttacta tttaagtttc accgtttttt
     7381 taaagctttt tcatcgtttt ttcatatttg gggtttatta tggaagtata taaatgcgaa
     7441 atttgcagag aggaaggaag acatggacga gaaagaaaag aatttaaatg aaaacagcga
     7501 gaatgaaagc acgccaaaaa gagaggtcga ggatacttta catacaccgg agagcgcgca
     7561 accagtccaa gaaactccta ttgtagaagg cgtgacccca gaaggggaga aatttgccgg
     7621 agcgacagaa gatgcagccg aggcgagttc tacaaatgca ttttttgaag aagcaagtaa
     7681 taaagaacca gaacctgcta gaccggctcc agggccaaga cgcgctggta caactggtgg
     7741 cggggcagtt ccacctaata gagtgaataa tggcggaagt ggtaacggga atggtgaacc
     7801 accgaaacgc ggcaaacact ttatcggtta ctttttaaca gcacttattg gtgttattat
     7861 cggaggactt attattttct ttgtcgcttg ggataatggt gacaatgcag atacaacttc
     7921 aaactcaaat aataaagcta ccaaagtaga aaaagtttca gtagatacaa catcagatgt
     7981 aacaaaagca gtagacaaag tacaagatgc ggtagtgagt gttctaaatt accaatcatc
     8041 ttcatccctt gatggaacaa cgacttctga acaagaagct tcctcaggat ctggtgttat
     8101 ttataaaaag gcaaatggaa aagcctacat cgtaacaaat aatcacgttg ttgctgatgc
     8161 aaataaatta gaagtaactt ttacaaacgg taaaaaatcc gaagcaaaat tactagggac
     8221 agacgaatgg aacgatttag ctgttcttga aattgatgat aaaaatgtta ctacagtcgc
     8281 tgcattcggc gattcagatt cattaaaact tggtgaacca gcaattgcaa ttggtagccc
     8341 gctaggaaca gaattttccg gttctgtaac acaaggtatt atttctggtc taaaccgtgc
     8401 agtaccagtt gatacaaatg gcgacggaac agaagactgg gaagcagatg ttatccaaac
     8461 agatgcagca attaaccctg gtaacagtgg tggagcttta attaatattg aaggccaagt
     8521 aattggtatt aactcaatga aaatttcgat ggaaaatgta gaaggtatta gctttgcaat
     8581 tccaagtaac acagtagaac caatcatcga acaactagaa acaaaaggcg aagtagaacg
     8641 tccatctcta ggtgtatcct tgcgtgatgt tgatactatt ccagaaacac aacaaaaaaa
     8701 tatcttgaaa ttacctgata gcgtagatta cggcgcaatg gtacaacaag tagtatccgg
     8761 ttctgcagca gacaaagcag gcttgaaaca atacgatgtt attgttgaac taaacggcca
     8821 aaaagtaaca aactccatga cattacgcaa aattctatac ggtaacgacg tgaaaattgg
     8881 cgataaagtc aaagtgaaat actatcgtga cggtaaagaa aaatccacag atattaaatt
     8941 agaagcagca aaaacaacta catgataaca aaaagccatt ctcttgaaaa agagggtggc
     9001 tttttttctg tggaaaactt gtggatagcg atttttttcg gatatagata tggtagagaa
     9061 caagaattct cctactaaat atagaactgg tttgtggata tgtggataac ttctgtggat
     9121 aacctgtgtg taagcagtga atatcttgtg gaaaagaaca attttgataa tttaatcaat
     9181 aaacacagat ttatttttga aaaaaacaca ttttttgcga aaatataggt caaaaaagaa
     9241 aaatgtggat agaaagccat ttatccacat ttttactttt tataagctgg atatgtgaca
     9301 aggaaaataa ctttacatag agatttgatt cgcgagattg attgtaggag aaggggttcc
     9361 actgtttggt ggagtttgag ttttgaatag ttaggcgaca atttcacctg tggataagct
     9421 gtggatagtg aaatttggct atcatatata ttgtggagaa tatacgttcg gacacaaaat
     9481 agagaagggg cttgtggata tgtggataat ttttggggat aacttgtgta taagggcggg
     9541 ataacctgtg gaataacttt ttatggaaag ctgctcttat tttattttga ctagtgcaat
     9601 gagggatttt tgatgtatga taaaagtatt aaaaaagata agggtggcat aaatgaatat
     9661 tcaaattgta acggtcggga aattaaaaga aaaatattta gtgcaaggaa tcgccgaata
     9721 tttaaaacga cttagcgcct ttgcgaaagt gacgatcgtt gaagttccgg atgagaaagc
     9781 tccggaagtg ctgagtgatg ccgaaatgaa gcaagtaaaa gataaagagg gtgcgcggat
     9841 tttagcaaag attccggacg atgcccatgt tattgcgctg gcgattgatg ggaaaatgaa
     9901 gtcgagtgaa gaatttgcgg cggatttgga taagctggcg acttatggta agagtaaggt
     9961 gacgtttgtg attggtggat cgctgggact tagtgaggcg gtgttgaagc ggagtaatga
    10021 gcggatttcg tttgggaggt taacgctgcc acaccagttg atgagattgg tgctggtgga
    10081 gcaggtttac cgggcgtttc gaattgttcg gggggagcct tatcataaat agctagctgg
    10141 ttgaaagggt tgtaatcaac aacttaactt ttgaatgctg gtttactttt ttcgataagc
    10201 catttttcac catttgaaat tgtatgatct gcatgataaa ttaatgtttt tcgaagtgat
    10261 gcgtattctg tgggtaatgt ttcatagttt agaaaatgat agtttagtgc gatgctttca
    10321 ggaataattc caataccaag ttcattattg cagatttcaa caagtgtttc gggaatattg
    10381 atctctgata tggaaacatt tgggatatta atatcgttaa tgagagcagc cagggcgcgg
    10441 tatgaataac attgtttgct gaagacgtat aatcgttctt ccgctaatat tttttggact
    10501 gattttccag ctgtgttgcc tgcgaaaact agtttatccc atgagagcgt ttgtgagatg
    10561 atttggctat cttgaaataa attttctttt tcgagttcag cgacatatgc gatggttagt
    10621 tctctgttag ctatttttgg tattaattca cttgtacttc cgctaacgat agataatttt
    10681 ttatttggaa actgttgata gaactcttta atgattgtgt taaattccat aggcaaagaa
    10741 gattgcgtaa taccgattga gatcgtttct tcttcattat tgataatatc aatcgtttcc
    10801 tcccataata aaatcatttt tttgaattgt tgatagattt tttcgccctc tttagttggt
    10861 tccacaccat tcgagtgccg gaagaaaagt tgagtttgga actgtttttc gatatttttt
    10921 attttattgg acatattaga ctgtaaatga tgcagttcat tcgctgctgc agaaatactc
    10981 tttagttcag ctactttatt aaatgctttc atgttttcaa tatccataat tttctccttt
    11041 tggtatcaaa aataatgata ccggcatatg attttcgcat ttcaaatgat agcgcagata
    11101 gattatactt tatttaca
//
LOCUS       DASEAA010000084        11010 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.084, whole genome shotgun sequence.
ACCESSION   DASEAA010000084 DASEAA010000000
VERSION     DASEAA010000084.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 11010)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 11010)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..11010
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.084"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..75)
                     /locus_tag="U0342_001794"
     CDS             complement(<1..75)
                     /locus_tag="U0342_001794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall teichoic acid glycosylation protein
                     GtcA"
                     /protein_id="HEM2423139.1"
                     /translation="MSKIRQLLNKIPWYTDQVHSIFMYL"
     gene            complement(108..1379)
                     /gene="rho"
                     /locus_tag="U0342_001795"
     CDS             complement(108..1379)
                     /gene="rho"
                     /locus_tag="U0342_001795"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination factor Rho"
                     /protein_id="HEM2423140.1"
                     /translation="MAKLSIAYLESLTIKEIYALAKEHKITYYSKLTKRELIFALLKS
                     NAEKEGFFFMEGVLEIIPNEGFGFLRPINYSSSSEDIYISASQIRRFELRTGDKVSGK
                     VRPPKENERYFGLLHVEAVNGENPEVAKERVHFPGLTPLYPDRQIHLETGKNPISTRT
                     IDLISPIGFGQRGLIVAPPKAGKTVLLKEIANAITTNHPESELIVLLIDERPEEVTDI
                     ERSVKADVVSSTFDEVPENHIKVAELVLERAMRLVEQKRDVVILMDSITRLARAYNLV
                     IPPSGRTLSGGIDPAAFHRPKRFFGAARNIEEGGSLTILATALVDTGSRMDDVIYEEF
                     KGTGNMELHLDRQLAERRVFPAIDMRRSGTRKEELLLSKERLEQLWKIRKAMPKQSDG
                     LDISERFVRYLKKTENNEAFYELLQEEMFKK"
     gene            complement(1484..2755)
                     /locus_tag="U0342_001796"
     CDS             complement(1484..2755)
                     /locus_tag="U0342_001796"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM2423141.1"
                     /translation="MTDKLIIRGGKKLAGTLQVDGAKNSAVALIPAAILAESEVVLEG
                     LPDISDVHTLYNILEELGGTVRYDNKTAVIDPTDMISMPLPSGNVKKLRASYYLMGAM
                     LGRFKKAVIGLPGGCYLGPRPIDQHIKGFEALGAKVTNEQGAIYLRADELKGARIYLD
                     VVSVGATINIMLAAVRAKGKTVIENAAKEPEIIDVATLLTNMGAIIKGAGTDTIRITG
                     VEHLHGCHHTIIPDRIEAGTFMVLAAASGKGVRIENVIPTHLEGIIAKLTEMGVPMDI
                     EEDAIFVGEVEKIKKVDIKTYAYPGFPTDLQQPLTALLTRAEGSSVITDTIYPSRFKH
                     IAEIERMGGKFKLEGRSAVINGPVQLQGSKVTATDLRAGAALVIAALLADGETEIHGV
                     EHIERGYSKIIEKLSAIGANITRSSAAETKL"
     gene            complement(2872..3945)
                     /locus_tag="U0342_001797"
     CDS             complement(2872..3945)
                     /locus_tag="U0342_001797"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012580737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flippase-like domain-containing protein"
                     /protein_id="HEM2423142.1"
                     /translation="MSGGAKKNLFNIAIVLAISIGFIIWQFQGVDISTFFASMLKVNP
                     WWLSAAFAAMFIYWFLEAVVLQTASKPANKDQRFFSSFRITMIGQFFNTITPMATGGQ
                     PAQLVMLTKQGMDAGRGSSVLLVKFIIYQAMVVLNFLVILIFGIHYLMTGVTQLKFLV
                     LLGFGVHVIVIAALILVGRSQKFTTKLVHVLLIPTRLFMKKEKVSNLRNTLDEKIITF
                     HEESSRIGKDWKLIVRCCFYTTLQLWIYFSIPFFILQAIGVTGIGLYMAITYHAFIIM
                     FATVMPTPGGAGGAEYTFTLLFGMLLGPAKLLMALVLWRIITYYSCIVFGAGALLIKD
                     TASKKIKPRIKALAKAPAKNIPQ"
     gene            complement(3952..4977)
                     /locus_tag="U0342_001798"
     CDS             complement(3952..4977)
                     /locus_tag="U0342_001798"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM2423143.1"
                     /translation="MIKLTMLSSAEKVKGQGVASAYRELVNLLEERYKNEIDMKINSF
                     EKSDITHYHTVDFRFFLSTFFKKKRGVRVGYVHFLPETMEGSLKLPWIARVVFYKYLI
                     GFYKRMDEIVVVNPSFIPKLTAYNIPAEKIHYIPNFVSKKSFFPISKGEKELARAKYE
                     IPADKFTVIGIGQVQHRKGVLDFIEVAKQLPDVQFVWAGGFSFGKITSGYEELKKIYD
                     NPPSNVKFIGIVDRSEMNSCINMADVFFMPSYNELFPMAILEAMSCDVPILLRNLDLY
                     EEILDGYYVKEVDNPGFIRAIERLENDTNYYNEMLQASKRGAAYYSEDRLAEIWLDFY
                     QGLLTKE"
     gene            complement(4970..6253)
                     /locus_tag="U0342_001799"
     CDS             complement(4970..6253)
                     /locus_tag="U0342_001799"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 4 protein"
                     /protein_id="HEM2423144.1"
                     /translation="MNIGIFTDTYSPQISGVATSIMIMENELRKQGHTVYIFTTTDPN
                     ADRESEEGRVFRLPSIPFVFFPERRVAIAGMNKFIKLVGRLDLDIIHTHTEFSLGLLG
                     KRIAKKYHIPSIHTYHTMYVDYLHYIAKGKILTPSMVGKMTKSFCDSYDAIITPTAKV
                     RHHLEEQGIHKLMYTVPTGTDISSFAPVEKQRILNLKKLLGIGENDPVILSLGRIAHE
                     KNIDAIINAMPEVLQTKTTAKLVIVGDGPVRKDLEKLVEEKQLADHVIFTGAVDWENI
                     SLYYQLGDLFVSASTTETQGLTYAEAMAASLPVVAKRDESIEGFLSDRETAFLFNEDD
                     ELASLLINILSDKNTATLVATNGRVKVESISADQFGINIESTYNEVREIYRVKRQNGT
                     IKVKPTLIKSKIASQVFSLSSSTHVQRKERSSRRD"
     gene            complement(6574..7428)
                     /gene="fba"
                     /locus_tag="U0342_001800"
     CDS             complement(6574..7428)
                     /gene="fba"
                     /locus_tag="U0342_001800"
                     /EC_number="4.1.2.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-1,6-bisphosphate aldolase"
                     /protein_id="HEM2423145.1"
                     /translation="MPIVNMTDMLKKALAGKYAVGQFNINNLEWTQAILKAAEAEKAP
                     VILGVSEGAAKYMGGFKTVVKMTEGLVEDLKITVPVAIHLDHGSSFDSCKAAIDAGFS
                     SVMIDGSHHPIDENIAMTKQVVDYAHAKGVSVEAEIGTVGGDEDGVTGGINYADPQEC
                     LRVVKEANIDALAAALGSVHGPYHGEPVLGFDEMKEISELTGAPLVLHGGSGIPEHQI
                     KKAIELGHSKINVNTECQIVWTAAVREKLATDDKVYDPRKVIGPGVDAIIKTVTEKIQ
                     EFGSNGKA"
     gene            complement(7596..8516)
                     /locus_tag="U0342_001801"
     CDS             complement(7596..8516)
                     /locus_tag="U0342_001801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HEM2423146.1"
                     /translation="MQKKAMIIYNPAAGKNKFRKLLPDAEKILTEADFEVTLVPSTPA
                     PKSTTFIAKQAAEAGFDVVIAAGGDGTVNEVVNGLMQVDTPPKLGVLPVGTTNDYARA
                     LNFAKNPLEALRIIAKQETIRVDIGKANETEFFINNAAGGKITEITYAVKESMKSKWG
                     RLAYLFSGLTVLPKLSPVYVEIAYNDKIFKGEILLFFVNKSNSVGGMETLCPPAELNS
                     GMFELLILKKVSPKTLFQLFASIKKGTHLSSPHVIHARTNKVTINSEADLNVSYDGVY
                     GGKAPYTLEVIPEALEVFADTNRISSRLRG"
     gene            8833..>11010
                     /locus_tag="U0342_001802"
     CDS             8833..>11010
                     /locus_tag="U0342_001802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2423147.1"
                     /translation="MKKLVKSAVVFASLVFIGTSATMITEKASAASIDPVQKADGQAT
                     YIPKGVRDGTATEEHDGFEDGTNSVLQQVPLLRATTGYPDVNAYIKSNKFSTAKIEKQ
                     LKSQFPKFNYRNGYGKPEGIVIHETANNSSTITGEINYMSTNYNNAFVHAFVDKSRII
                     QIHPTENGVWGAGQYANARFIQVELVRSKTFDEFARSINNYAYYAAYLLDQYNLPVDS
                     AHSDGKGTVWSHDAVTRYLGGTTHTDPVSYFNQWGYNFNSFVTLINEKYKAIQASKVT
                     YDKIEYDKGVTAYARVKTAPGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTPI
                     TTWYQFSIDGKVIGWVDTRALDTFYKQSMEQPANLTRYVASNKTGEAYYKVPVVDADV
                     KWGTLAAYKDQKLTVDKQATVEGQLWYRVRTSTTFIGWTKASNLTATSPFDKIEYDKG
                     VTAYARVKTAPGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTVITTWYQFSID
                     GKVIGWVDTRALDTFYKQSMEKDTNLTRYVIANKVNEAYYKVPVVDADVRWGTLAAYK
                     DQKLTVDKQATVEGQLWYRVRTSTTFIGWTKASNLTTTTPYDKIEYDKGATAYARVKT
                     APGNAVWTKPYRTEGSKLVNQLSVYQGKNMRILREAKTVITTWYQFSIDGKVIGWVDT
                     RALDTFYKQSMEKDTNLTRYVIANKVNEAYYKVPVVDADVRWGT"
BASE COUNT         3356 a         2263 c         1919 g         3472 t
ORIGIN      
        1 taaatacata aaaatactgt gtacctgatc tgtgtaccac ggaattttat ttaataattg
       61 tcttattttg ctcataaaat aacttctttc tatgtgaaat ttttgattta ttttttaaac
      121 atctcttctt gtagtaactc ataaaaagct tcattattct ccgttttctt caaataacgt
      181 acaaatcgtt ctgaaatatc tagtccatcg ctttgtttcg gcatcgcttt gcggattttc
      241 cagagttgtt caagacgctc tttggatagt agtaattctt cttttcttgt gccggagcga
      301 cgcatatcga tagcaggaaa aacgcgacgt tctgcaagtt ggcgatcaag atgtaactcc
      361 atgttgcctg tccctttgaa ttcttcgtaa ataacatcgt ccattcgaga acccgtgtca
      421 actaatgctg tggcaagaat ggttaagctt ccaccctctt caatattacg agcagctcca
      481 aagaagcgct tcggtctatg gaatgcagca ggatcaatcc cccctgaaag tgttcgacca
      541 cttggcggaa tcactaggtt ataggccctc gcaagtcgcg taatactatc cattaaaatg
      601 accacatcgc gtttttgttc tactaaacgc atcgctcgtt caagaaccag ttctgctact
      661 ttaatgtgat tttcaggtac ctcatcaaat gtggaactga caacatcggc ctttacagaa
      721 cgttcgatat cagttacttc ttccggacgc tcatcaatta acaagacaat caattctgac
      781 tctggatgat tagtagtaat cgcgttcgca atttctttaa gtaataccgt tttacctgct
      841 tttggtggag ctacaataag tccgcgttga ccaaaaccaa ttggtgaaat caaatcaatc
      901 gttcttgtgg aaataggatt tttgcctgtt tctaaatgaa tttgacgatc tggataaagc
      961 ggtgttagtc ctgggaaatg cactctttct ttagccactt caggattttc tccattgaca
     1021 gcctcaacat ggagtaagcc aaagtaacgt tcattttctt tcggaggacg aacttttcca
     1081 gaaaccttat ccccagttct taactcgaaa cgtctaattt gggaagcaga gatgtaaata
     1141 tcttccgaac tagatgaata gttgataggg cgtaagaagc caaaaccttc atttggaata
     1201 atttctaata caccttccat gaagaaaaat ccttcttttt ctgcgtttga ttttaataaa
     1261 gcaaaaatca attctcgttt tgttaattta ctatagtaag taattttgtg ttcttttgct
     1321 aaggcatata tctctttgat tgttaaactt tctaagtatg caatggacag tttagccata
     1381 tatgtaccac ctttttgagt taataaatag tatttaggaa taaatgataa tggagggatt
     1441 tagagggaag gctgaaacga cttgattcgt tcagcctcat tttttataat tttgtttctg
     1501 ctgcgctact acgagtaata tttgcgccaa tagcagataa tttttcaata atcttactgt
     1561 aaccacgttc gatatgttcc accccgtgaa tttcagtttc tccgtcagct aaaagtgctg
     1621 caattacaag cgctgcaccg gcgcgtaaat ctgtcgctgt cactttagaa ccttgaagtt
     1681 gcacaggacc atttatgaca gccgaacgac cttcaagttt aaacttaccg cccattcgtt
     1741 caatctccgc aatgtgttta aaacggcttg gataaattgt atcagtgatg acactactac
     1801 cttccgcacg tgttaaaaga gcagttaacg gttgttgtaa gtccgttggg aagcctggat
     1861 aagcgtaagt tttaatatct acttttttta ttttttctac ttccccaaca aaaatagcat
     1921 cttcttcgat atccattgga acgcccattt ctgtgagctt tgcaatgatt ccttctaaat
     1981 gggtaggaat aacattttcg attcgtactc ccttcccaga agctgctgca agtaccatga
     2041 atgtccctgc ttcgattcgg tctggaataa ttgtatgatg acaaccatgt aaatgctcta
     2101 ccccagtgat tcgaatagta tcagttcctg cacctttaat aattgctccc atatttgtta
     2161 aaagcgttgc aacatcaata atttctggct cttttgctgc attttcgata accgtttttc
     2221 cttttgcacg aacagccgct agcatgatat tgattgtcgc tccaacactt acaacatcta
     2281 aataaatccg tgcacctttg agttcatcgg cacgcaaata aatcgcacct tgctcgttcg
     2341 ttacttttgc gcctaatgct tcaaaacctt ttatatgttg gtcgattgga cgtggcccta
     2401 agtaacaacc gcctggaagt ccaataaccg cttttttaaa tcggcctaac attgcaccca
     2461 ttaaataata ggacgcacgt aatttcttca catttcccga tggaagtggc atagaaatca
     2521 tatctgttgg atcaataact gctgttttat tatcatagcg aaccgtgccg ccaagctctt
     2581 ctaaaatatt ataaagtgtg tgaacatccg aaatatctgg taaaccttct aaaaccactt
     2641 cagactccgc caaaattgcc gctggaatta atgccaccgc actatttttt gcgccatcca
     2701 cttgcaaagt accagctaat tttttaccgc ctcgaataat caatttatcc gtcacaaatg
     2761 tacccttctt tcttgaagca tgtaatactg tttcattatc cattaatttg ttttactttg
     2821 caagaaatgc tttccctaaa aagctgggaa cattacgtcc caagctttta atcattgtgg
     2881 tatatttttg gctggtgctt ttgcgagtgc tttgatacgc ggtttaattt ttttcgaagc
     2941 tgtatctttt attaataatg cgcccgcccc gaaaacgatg cagctataat aagtaataat
     3001 ccgccataaa acaagtgcca ttaggagttt tgccggaccg agtaacatac cgaataacaa
     3061 agtgaaagta tactcagctc ccccagcccc acccggcgtt ggcatgactg tcgcaaacat
     3121 aataataaaa gcatgatacg taatcgccat atacaggcca attcctgtca caccaatcgc
     3181 ttgtaaaata aagaaaggga ttgagaagta aatccaaagt tgcaacgttg tataaaaaca
     3241 acaacgaaca attaatttcc aatctttacc aattcggcta ctttcttcat ggaaagtaat
     3301 aattttctca tctaatgtat ttcttaaatt agaaactttt tcttttttca taaataaacg
     3361 tgttggtata agtaaaacgt gcactaattt tgtcgtgaac ttttggcttc ttcctactaa
     3421 aataagcgca gcgatgacaa taacatgcac accaaaccct agtaaaacaa ggaatttcaa
     3481 ttgtgtcacg ccagtcatta aataatgaat accaaaaatc aagataacta aaaagttcag
     3541 tacgaccatc gcttggtaaa taatgaattt tacaagtaag actgaacttc ctcgccccgc
     3601 atccatgcct tgcttcgtca acataacgag ttgcgcaggc tgtccgccag tcgccattgg
     3661 agtaatggta ttaaaaaatt ggccaatcat tgtaatccgg aatgacgaaa aaaaacgttg
     3721 gtccttattc gctggtttag atgcagtttg taaaacaacc gcttctaaaa accaataaat
     3781 aaacattgca gcaaaggcag ccgagagcca ccaagggttc acttttaaca tcgaagcaaa
     3841 aaaagtggag atatctacgc cttgaaattg ccaaataatg aagccgatgc taatggctaa
     3901 tacaatcgca atattaaata ggtttttctt tgcgcctcca ctcattacct ttcactcctt
     3961 cgttaataat ccttgataaa agtccaacca tatttcagcc agtcgatcct ctgaataata
     4021 agccgctcct cgttttgatg cttgtaacat ttcattataa taatttgtat cattttctaa
     4081 acgttcgata gccctaataa aaccagggtt atctacttct tttacataat agccatctaa
     4141 aatttcttca tacagatcta aatttcgtaa taatatcgga acatcacaac tcatcgcttc
     4201 caaaatcgcc attggaaata attcgttgta agatggcata aagaacacat ctgccatatt
     4261 aatacatgaa ttcatttcag aacgatccac aattccaatg aatttcacat tacttggtgg
     4321 attatcatag attttcttca attcctcgta gccagaagtg attttaccaa aagaaaatcc
     4381 gcctgcccaa acaaattgaa catcaggaag ttgtttagca acctcaataa aatcaagcac
     4441 acctttacga tgttgcactt gaccaattcc aatcacggta aatttatccg ccggaatttc
     4501 atattttgcc cgagcaagtt ctttttctcc ttttgaaatg gggaaaaagc tcttttttga
     4561 aacgaaattc gggatataat gaattttttc tgctggaata ttataagccg taagtttggg
     4621 aataaaagag ggatttacaa caacaatctc atccattcgt ttataaaaac caatcaaata
     4681 tttatagaaa actacgcggg caatccaagg taatttgagg ctcccttcca ttgtttcggg
     4741 taaaaaatgg acatatccga cccgaacgcc tcgtttcttc ttaaaaaaag tcgaaagaaa
     4801 aaaacggaaa tcaacggtat ggtaatgcgt gatatccgat ttctcaaaac tattaatctt
     4861 catatcaatt tcattcttat atcgttcttc tagcaaattc acaagttcgc ggtaagctga
     4921 tgccacaccc tgacctttta ctttttctgc cgaagatagc attgtcaact taatcacgcc
     4981 gcgatgacct ctctttcctt tgaacgtgtg tagaagatga tagtgaaaat acttgtgaag
     5041 ctattttact ttttatcagc gtgggcttta ctttaatcgt cccattttgg cgctttactc
     5101 ggtatatttc acgaacttca ttgtatgtag attcaatgtt gattccaaat tgatccgcag
     5161 aaatggattc cacttttact cggccattcg tagcgaccaa tgtggctgta tttttgtctg
     5221 aaagtatatt tattaacagt gatgcaagct catcatcttc attgaataaa aaggctgttt
     5281 ctctgtcgct taaaaagcct tcaatacttt catcacgttt ggcaacaact ggtaaagaag
     5341 cggccattgc ttctgcataa gtcaaacctt gtgtttctgt cgttgaagca ctcacaaaca
     5401 gatcccctaa ttgataatat aaactaatat tttcccagtc tactgcacca gtgaaaataa
     5461 catgatctgc taattgtttt tcttctacta atttttctaa gtctttgcgc acaggaccat
     5521 cgccaacaat aaccaatttg gctgtggttt tggtttgaag gacttctggc attgcattaa
     5581 taatcgcatc gatatttttt tcatgcgcaa ttcttccaag tgatagtatc actggatcat
     5641 tttctccaat accaagtagt ttcttcaagt ttagaattcg ctgtttttca actggcgcga
     5701 acgatgaaat atctgtgcct gttggaacag tgtacattaa tttgtggata ccttgctctt
     5761 ctaagtgatg ccttactttt gcagttggag tgattatggc atcatagcta tcacagaacg
     5821 attttgtcat tttacccacc atagaaggtg tcaaaatttt acctttcgca atataatgca
     5881 agtaatcgac atacattgtg tggtaggtat ggatagatgg aatatgatat tttttagcaa
     5941 ttcgcttacc taatagacct aatgaaaact ccgtatgtgt gtgaattata tctaaatcca
     6001 agcgccctac tagcttaata aacttattca ttccagcaat tgctacgcga cgttctggga
     6061 aaaagacaaa cggaatactt ggtaaacgaa acacacggcc ctcttcgctc tctctatcag
     6121 cgtttgggtc ggttgttgta aatatataca cagtgtgccc ttgttttctt agttcgtttt
     6181 ccataatcat tatcgatgta gctacaccgc taatttgcgg actgtaggta tccgtaaaaa
     6241 tccctatatt cattactatc gcctactctc ttcctcgttg gttcattcat catttaatat
     6301 attattataa cataactata gtaagtcgta tcacataact aactacatta tggctcattt
     6361 atttagataa aacatgcgcc tgaagcatga ttttttatcg ggaaatttag attgattcag
     6421 tctattaaat gaaagctata gttatcatac catattagtc ttaataacga taattaaatt
     6481 ccctctatac taaccctcgc aatacataaa aaataactgg taaaatcaac aagtgatcct
     6541 accagttatt tttatatcat cataaagttc gtcttacgct ttaccgttag aaccaaactc
     6601 ttgaattttt tctgttacag ttttgataat cgcgtccaca ccagggccga ttactttacg
     6661 tggatcataa actttgtcat cagtagctaa tttttcgcga acagctgcag tccaaacgat
     6721 ttggcattca gtgttaacgt tgattttact gtgacctagt tcaattgctt ttttgatttg
     6781 gtgttcagga attccagaac caccgtgaag tacaagtgga gcacctgtaa gttcggagat
     6841 ttctttcatt tcgtcaaaac caagaacagg ttcgccgtgg taaggaccgt gaacagaacc
     6901 taatgctgca gctagtgcat caatgttagc ttctttaact acacgtaaac attcttgtgg
     6961 atcagcatag ttgattccgc cagtaactcc gtcttcgtct ccaccaacag ttccaatttc
     7021 agcttcaaca gatacgcctt tagcatgcgc atagtcaaca acttgtttag tcattgcaat
     7081 gttttcgtcg attgggtggt gagagccgtc gatcattaca gaagagaatc ctgcatcgat
     7141 agccgcttta caagaatcaa agcttgaacc atgatcaaga tgaatcgcaa caggtacagt
     7201 gattttcagg tcttctacaa gtccttcagt catttttaca actgttttga atcctcccat
     7261 gtatttagca gctccttcag aaactcctaa aataactggt gctttttctg cttctgcagc
     7321 tttcaaaata gcttgagtcc attcaaggtt gttgatgttg aattgaccaa cagcatattt
     7381 tccagctaat gcttttttca gcatgtctgt catgttaacg ataggcataa tacaatttcc
     7441 tccctcagga atttaggaaa accattttga ttttccctaa gatttgaatt tccgccgtga
     7501 aaaatagtgg cagctatttt cccctaacaa acatatgata acagatttgt gatgaattta
     7561 ccataaaaac tagaaaattt tctagtgtaa acgctttagc ctctaagacg ggaagaaatc
     7621 cgatttgtat cagcaaatac ttctaatgct tctgggatta cctctaatgt atacggtgct
     7681 tttcctccat atacaccatc atagctaaca tttaaatctg cttcgctgtt tatagtaact
     7741 ttatttgttc gcgcatggat tacatgcgga ctacttaagt gtgtaccctt ttttatagaa
     7801 gcaaataatt gaaataatgt tttaggagag actttcttta aaattaataa ctcaaacatt
     7861 ccactattta attcagcagg aggacacaat gtctccatac caccgaccga gttggactta
     7921 tttacaaaaa acagcaaaat ctcaccttta aatattttat cgttatatgc aatttcgacg
     7981 tacactggtg atagttttgg aagaacagtt aaaccgctaa acagataagc aagtctgccc
     8041 catttggatt tcattgattc ttttacagca taagttattt cggttatttt cccaccagct
     8101 gcgttattaa tgaaaaattc ggtctcattg gctttaccga tatcgacacg aattgtttct
     8161 tgcttggcta taattcgaag tgcttcgagt ggatttttag caaaatttaa cgctctcgca
     8221 taatcattcg tcgttccaac cggtaacact cctagtttcg gtggggtatc aacttgcatc
     8281 aacccattaa caacttcatt tactgtacca tctccacctg ctgcaattac aacatcaaaa
     8341 ccggcttctg cagcttgttt ggcaataaat gtagtacttt taggtgctgg agttgatggg
     8401 actaaagtta cttcaaaatc tgcttctgtt aaaatttttt ctgcatccgg aagtaatttt
     8461 ctaaacttat ttttacccgc tgccggattg tatattatca tcgctttctt ttgcaaattg
     8521 ccgctccctc tttcctatat atataattta gtttcctatt ttggccttag gatgtcaact
     8581 tgtttgactg aaagaaaacg ctagttaaat tgaagggctt tttacctatt acaattcaca
     8641 tacattaaat tagttaaaat tacattttgg gacaccatat cgaaatttta ttgcttttac
     8701 agaaaaaaac atacgtaaat aggttcattg ttaccaatat ccattgacta caaccaggcg
     8761 tgttgtcata attagaaata gaatactttt atttaatata aaaagtagtg cagttaggag
     8821 aggatttaaa ctttgaaaaa attagtaaaa tcggcggttg tttttgcaag ccttgttttt
     8881 attggcacct ccgctactat gattacagaa aaagcaagtg ctgcttccat tgatccggtg
     8941 caaaaagcag atggtcaagc tacttatatc cccaaaggag ttagagatgg gactgcaacg
     9001 gaagaacatg acggctttga agatggaact aatagcgtac tacagcaagt ccctttgctt
     9061 cgcgcaacaa caggataccc tgatgttaat gcctatatta aatcaaacaa attttcaaca
     9121 gcaaaaatag aaaaacaatt aaaaagccaa tttcctaaat tcaactatcg taatggttac
     9181 ggcaaaccag aaggaatagt tattcatgaa acagcaaata attcatctac tattacaggt
     9241 gaaatcaatt atatgagtac caactacaac aatgcctttg ttcacgcttt tgtagacaag
     9301 tctcgtataa tccaaatcca tcctactgaa aatggtgttt ggggagcagg acaatatgct
     9361 aatgctcgtt ttatccaagt tgaattagtt cgttcgaaga cattcgatga atttgctcgt
     9421 tctattaata actatgccta ttatgctgcg taccttttag atcaatataa ccttcctgtt
     9481 gatagcgcgc acagtgacgg caaaggaaca gtctggtccc acgatgcagt tacacgttat
     9541 ttaggcggaa caacccatac tgatcctgtt tcttatttca accaatgggg ttataatttc
     9601 aatagttttg ttacattgat taatgaaaag tacaaagcga ttcaagctag caaagttact
     9661 tacgacaaaa tcgaatacga taaaggcgtc acagcctacg ctagagttaa aactgcacct
     9721 ggtaatgcag tttggacaaa accttacaga acagaaggct cgaaactagt taatcaactt
     9781 tctgtctacc aaggtaaaaa catgcggatc ttgcgtgaag ctaaaacacc aattactact
     9841 tggtatcaat tcagcattga cgggaaagta atcggttggg ttgatactcg tgcactcgat
     9901 acgttctaca aacaaagcat ggaacaacca gctaatttaa ctcgctatgt cgcttccaac
     9961 aaaactggtg aggcctacta caaagtacct gttgttgatg cggatgtcaa atggggcact
    10021 ttagctgctt ataaagatca aaaactaacc gtggataaac aagcaacggt ggaagggcaa
    10081 ctttggtatc gcgttagaac aagcactacc tttattggtt ggacgaaagc ttccaactta
    10141 acagctacct ctccatttga taagattgaa tacgataaag gtgtcacagc ctatgctaga
    10201 gttaaaactg cacctggtaa tgccgtttgg acaaaacctt acagaacgga aggctctaaa
    10261 cttgtcaatc aactttcggt ctaccaaggc aaaaacatgc ggatcttgcg cgaagctaaa
    10321 acagtaatta ctacctggta tcaatttagt attgatggga aagtaatcgg ttgggttgat
    10381 actcgtgcac tcgatacgtt ctataagcaa agcatggaga aagatactaa tttaactcgc
    10441 tatgtgattg cgaacaaagt aaacgaagcg tactacaaag tgcctgttgt ggatgcggat
    10501 gttagatggg gcactttagc tgcttataaa gatcaaaaac taaccgtgga taaacaagca
    10561 acggtcgaag gacagctttg gtaccgcgtt agaacaagca ctacttttat cggttggaca
    10621 aaagcttcga acttaacaac aactacgcca tacgataaaa ttgaatatga taaaggcgcc
    10681 acagcctatg ctagagtaaa aactgcgcca ggcaatgccg tttggacaaa accttacaga
    10741 acggaaggct ctaaacttgt taatcaactt tcggtctacc aaggtaaaaa catgcgaatc
    10801 ttgcgcgaag ctaaaacagt aattactacc tggtatcaat tcagcattga cgggaaagta
    10861 atcggttggg ttgatactcg tgcactcgat acgttctata agcaaagcat ggagaaagat
    10921 actaatttaa ctcgctatgt gattgcgaac aaagtaaacg aagcgtacta caaagttcct
    10981 gttgtagatg cggatgttag atggggcact
//
LOCUS       DASEAA010000085        10946 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.085, whole genome shotgun sequence.
ACCESSION   DASEAA010000085 DASEAA010000000
VERSION     DASEAA010000085.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10946)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10946)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10946
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.085"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            276..2876
                     /gene="lap"
                     /locus_tag="U0342_001803"
     CDS             276..2876
                     /gene="lap"
                     /locus_tag="U0342_001803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465159.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adhesion-mediating acetaldehyde/alcohol
                     dehydrogenase LAP"
                     /protein_id="HEM2423148.1"
                     /translation="MAIKENAAQEVLEVQKVIDRLADNGQKALKAFESYNQEQVDNIV
                     HAMALAGLDQHMPLAKLAVEETGRGLYEDKCIKNIFATEYIWNNIKNNKTVGVINEDV
                     QTGVIEIAEPVGVVAGVTPVTNPTSTTLFKAIIAIKTRNPIIFAFHPSAQRCSSAAAK
                     VVYDAAIAAGAPEHCIQWVEKPSLEATKQLMNHDKVALVLATGGAGMVKSAYSTGKPA
                     LGVGPGNVPAYIDKTAKIKRSVNDIILSKSFDQGMICASEQAVIVDKEVAKEVKAEME
                     ANKCYFVKGAEFKKLESYVINPEKGTLNPDVVGKSPAWIANQAGFKVPEDTKILVAEI
                     KGVGDKYPLSHEKLSPVLAFIEAANQAEAFDRCEEMLVYGGLGHSAVIHSTDKEVQKA
                     FGIRMKACRIIVNAPSAQGGIGDIYNGFIPSLTLGCGSYGKNSVSQNVSATNLLNVKR
                     IADRRNNMQWFKLPPKIFFEKYSTQYLQKMEGVERVFIVTDPGMVQFKYVDVVIEHLK
                     KRGNDVAYQVFADVEPDPSDVTVYKGAELMKDFKPDTIIALGGGSAMDAAKGMWLFYE
                     HPEASFFGLKQKFLDIRKRTFKYPKLGGKAKFVAIPTTSGTGSEVTPFAVITDKENNI
                     KYPLADYELTPDVAIVDAQYVTTVPAHITADTGMDVLTHAIESYVSVMASDYTRGLSI
                     RAIELVFENLRESVLTGDPDAREKMHNASALAGMAFANAFLGINHSLAHKIGPEFHIP
                     HGRANAILMPHVIRYNALKPKKHALFPRYESFRADEDYARISRIIGFPAATTEEGVKS
                     LVDEIIKLGKDVGIDMSLKGQNVAKKDLDAVVDTLADRAFMDQCTTANPKQPLVSELK
                     EIYLEAYKGV"
     gene            2999..3427
                     /locus_tag="U0342_001804"
     CDS             2999..3427
                     /locus_tag="U0342_001804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465160.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM2423149.1"
                     /translation="MIQATVPYFTFDGEATEALDFYKKVFQAEITQMRYFHELEGFSG
                     DKKQGERILHARLTKDEKDLFYFSDTLEGETDAGNRLALAVNFSSEADFVHAFVLLSK
                     TGTIEIPIQNTFWDAKYAKVIDHYSIDWHLNLENESTTKV"
     gene            3511..4431
                     /locus_tag="U0342_001805"
     CDS             3511..4431
                     /locus_tag="U0342_001805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465161.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423150.1"
                     /translation="MTETVLKLEHVTKKIGQKNIVHDISFDIHKGEVFGLLGPNGAGK
                     TTIIRSIVGLIRRSEGTVFINGKNVDTEYKAAISEVGAIIENPEFYMYMSGWANLKQF
                     ARMSQKNITDEHVREIVELVKLTGAINQKVKTYSLGMRQRLGVAQALIHSPALLILDE
                     PTNGLDPQGMAEFRTLIRDLATNGTSVLISSHLLSEIQQITDRFAIINKGVLTHIEKM
                     SDLIENHVAAYKLKVSDPEATKTVLATLPVKLVAQNEDLFKIEVAHEDVHLIARALIQ
                     ANIDLLEMVPLQASLEERFLELTKGGGAEV"
     gene            4428..5495
                     /locus_tag="U0342_001806"
     CDS             4428..5495
                     /locus_tag="U0342_001806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEM2423151.1"
                     /translation="MIALVKNEFTKLFSRKSSWIMQIVLFVAVLALALLMFFVSKIDT
                     SGIEGGDASNAGITAYYDDKGAPVSEEEYWNSADKDGNPTYKSETLSLTDSVAYLKTQ
                     EQAAPTKEAKETIQKQIDFYQAYVDADEKPASNSAGISSADFFASLGSSGAVATMLVV
                     VVASIIVATEFSGGTIKLLLTRPYSRSQILFSKYVMCIVYSIISSITLLVASFIFSFI
                     LPKQSIFMPLSPSTGAMTAFEHAWMLLGTNFLLMIVYATIAFFFSSVVRSQALAVGVG
                     VGVLFSGGIIRQLLPLAIEKYDWMKWIIFNLLSLNDTVGGSKIAGGLADWQIIAGLGV
                     YTAIILFFTFFLFKKRDVALS"
     gene            complement(5532..6506)
                     /locus_tag="U0342_001807"
     CDS             complement(5532..6506)
                     /locus_tag="U0342_001807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LD-carboxypeptidase"
                     /protein_id="HEM2423152.1"
                     /translation="MIPAKLKQGDEIRIIAPSRSIGIMADNQVEIAVKRLTDMGFKVT
                     FGEHVAEMDCMMSSSIRSRVADIHEAFNDSSVKAILTVIGGFNSNQLLPYLDYELISE
                     NPKILCGFSDITALATAIYTQTELITYSGAHFSSFSMEKGLDYVMDSFSKCLLQKEPF
                     ALKESAAWSDDEWYLDQENRNFIPNEGLVVMQPGEAEGIIIGGNLCTLNLLQGTEYMP
                     NLAGTILFIEDDFMTVPETFDRDLESLLSQPGAGEIEGLVIGRFQQKTAMTAEKLAYI
                     IETKTALQKIPVISGADFGHTQPIATFPIGGTARIDTNQTDKIQIIRH"
     gene            complement(6503..7084)
                     /locus_tag="U0342_001808"
     CDS             complement(6503..7084)
                     /locus_tag="U0342_001808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase I"
                     /protein_id="HEM2423153.1"
                     /translation="MSEELRCPWSINDPFELEYHDTEWCVPSKDDTYLFEMLNLEGAQ
                     AGLSWRLILHKRKAYQEAFFHFDIDKCARLTDDELATIVEEAAIVKNRLKVKAVRTNA
                     LATQKVQAEFGSFANYIWGFTNNDRIINEWQGMGEVPASTELSEKISKDLKKRGFKFV
                     GPVIVYSYLQAIGILDDHLRSCPFHTFNREATK"
     gene            complement(7097..7330)
                     /locus_tag="U0342_001809"
     CDS             complement(7097..7330)
                     /locus_tag="U0342_001809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423154.1"
                     /translation="MRYQKISFIVTGIIAAVIGYLIFTSNYHPDVPNWLLFLFLALSI
                     AVAVSQWKEKRLIWSCVGLFVAVLISVYYILTI"
     gene            complement(7430..10132)
                     /gene="acnA"
                     /locus_tag="U0342_001810"
     CDS             complement(7430..10132)
                     /gene="acnA"
                     /locus_tag="U0342_001810"
                     /EC_number="4.2.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aconitate hydratase AcnA"
                     /protein_id="HEM2423155.1"
                     /translation="MTNWKEKAKASFQLNDKTYHYYKLKTLEEDKLTNIEKLPYSVRV
                     LLESVLRQADGRVIKDSHVEDLAHWSKDGNEGEVPFKPARVILQDFTGVPAVVDLASL
                     RKAMADLGGDPEKINPEIPVDLVVDHSVQVDSYANPEALKINMELEFKRNMERYQFLN
                     WAQKAFDNYRAVPPATGIVHQVNLEYLANVVIANEVADGEFVAFPDSLVGTDSHTTMI
                     NGIGVLGWGVGGIEAEAGMLGQPSYFPIPEVIGVKLLGALPNGATATDFALKVTQVLR
                     EQKVVGKFVEFYGPGVATLPLADRATVANMAPEYGATCGFFPVDKEALNYLKLTGRDK
                     EQIELVEAYLEANDLFFTPEKVEPNYTQIVEIDLSAIEPNLAGPKRPQDLIPLSKMKE
                     TFRESITAKAGNQGFGLDKSALDKEVTVTFGNGDQSTMKTGSVAIAAITSCTNTSNPY
                     VMLSAGLVAKKAVEKGLEVPKFVKTSLAPGSKVVTGYLEKAGLLPYLEKLGFDLVGYG
                     CTTCIGNSGPLKEEIEEAIQDSDLLVSAVLSGNRNFEGRIHALVKANFLASPPLVVAY
                     ALAGTTNVDMLTEPIGRGNNGEEVFLDDIWPSSEEVKALVEETVTPELFREQYAHVFD
                     ENEAWNAIETTEDALYKWDENSTYIANPPFFDNLAKEAGKVESLSGLRVIGKFGDSVT
                     TDHISPAGAIGKDTPAGKFLQEEGVAIRDFNSYGSRRGHHDVMMRGTFANIRIKNQIA
                     PGTEGGYTTYWPTGEVMSIYDASRKYIENNTGLVILAGDDYGMGSSRDWAAKGTNLLG
                     IKTVIAKSYERIHRSNLVMMGVLPLQFQPGEDAETLGLTGSESLQVEIGEEVAPRDLV
                     KVTAVREDGSSFTFEALARFDSEVEIDYYRHGGILPMVLRGKLK"
     gene            complement(10287..>10946)
                     /locus_tag="U0342_001811"
     CDS             complement(10287..>10946)
                     /locus_tag="U0342_001811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2423156.1"
                     /translation="SCGMIIDVITGVKERDFESIGKRRFNDKTDIRKIHQHMSEVEKY
                     IITSLVKWKEAENVFYTDADIIQFMLDIKDTLSSIQQQLLEGFMQENRNQVAAQRKEI
                     IQLSTRIIPINDSIGVLPIVGSLDDDRGYFMKEKAVESADKLNLDTIVIDFSSAVLKD
                     DFATKHMEEMIQSFKLIGLVPILSGMRPSFAQRTIQVGSNISKLESFGSLEQALTNLG
                     V"
BASE COUNT         3376 a         2269 c         2017 g         3284 t
ORIGIN      
        1 ttaaattcca atgataaaaa cactcatata aaccatgcct aattaactaa aaaaagcttt
       61 tccgaaagga cttttcaacc atctttgtca atttgtgaag tttttcacgt gaaacactgg
      121 acaaactttt attgatggat tatactaacg gtgtaatcaa ataaaacaaa agaatacggc
      181 aaagcaacaa gctaaatttt tttggattat cagggacgtt aaaagtctac tatggacatt
      241 ttaagtcccg aacaaatatt aggaggttct ggaaaatggc aattaaagaa aatgcggccc
      301 aagaagtatt agaagttcaa aaagtgattg acagattagc agacaatgga caaaaagcat
      361 tgaaagcatt tgaaagttac aatcaagaac aagtagacaa tatcgttcac gcaatggcac
      421 ttgccggact tgaccaacat atgccccttg caaaattagc agtagaagaa actggacgtg
      481 gattatacga agataaatgt attaaaaaca tcttcgcgac agaatatatt tggaacaaca
      541 ttaaaaacaa caaaacagta ggcgttatta atgaagatgt acaaactggt gtgattgaaa
      601 ttgctgaacc agttggagtt gttgccgggg ttacacctgt aactaaccca acatccacta
      661 ctcttttcaa agcaattatc gctatcaaaa cacgtaaccc aatcatcttt gctttccatc
      721 caagtgcaca gcgttgttca tctgcagcag cgaaagttgt atacgatgca gcaattgcag
      781 ctggagcacc agaacattgt attcaatggg tagaaaaacc ttccctagaa gcaacgaaac
      841 aattaatgaa tcacgataaa gtagcacttg tacttgcaac tggtggtgct ggaatggtta
      901 aatcagcata ctctactggt aaacctgcac taggtgttgg accaggtaac gtaccagctt
      961 acattgacaa aacagccaaa attaaacgtt ctgttaatga cattattctt tctaaatctt
     1021 ttgaccaagg tatgatttgt gcttctgaac aagcagtcat cgtggacaaa gaagtagcta
     1081 aagaagtaaa agcagaaatg gaagcaaaca aatgctactt cgttaaaggc gctgaattca
     1141 aaaaattaga aagctacgta atcaatcctg aaaaaggaac acttaaccca gatgtagttg
     1201 gtaaatcccc tgcatggatt gcaaatcaag ctggcttcaa agttccagaa gatacaaaaa
     1261 tccttgtagc tgaaattaaa ggtgttggcg acaaataccc actatctcac gaaaaattaa
     1321 gcccagttct tgcattcatc gaagctgcta accaagcaga agcattcgat cgttgtgaag
     1381 aaatgttagt atacggagga cttggacact ccgcagttat tcactctacg gataaagaag
     1441 ttcaaaaagc atttggtatt cgtatgaaag cttgccgtat catcgtaaat gcaccaagcg
     1501 cacaaggcgg tatcggtgac atttataacg gcttcatccc ttccctaaca ctaggttgtg
     1561 gatcttacgg taaaaactct gtatcacaaa atgtaagtgc gactaacttg ctgaacgtta
     1621 aacgtatcgc ggatcggaga aataatatgc aatggttcaa acttccacca aaaattttct
     1681 ttgaaaaata ttccactcaa taccttcaaa aaatggaagg cgttgaacgc gtatttatcg
     1741 taactgaccc aggaatggtt caattcaaat acgtggatgt cgtaatcgaa cacctgaaaa
     1801 aacgtggcaa cgatgtagct taccaagtat ttgctgacgt tgaaccagat ccatctgacg
     1861 taacagttta caaaggtgca gaactaatga aagacttcaa acctgataca attatcgctc
     1921 ttggtggtgg ttctgcaatg gatgctgcca aaggtatgtg gttattctat gaacacccag
     1981 aagcttcatt cttcggcttg aaacaaaaat tcttagatat ccgtaaacgt acattcaaat
     2041 atcctaaact tggtggaaaa gcgaaattcg ttgcaattcc aacaacaagt ggtacaggtt
     2101 ctgaagtaac tccatttgcg gttattacag acaaagaaaa caacattaaa taccctcttg
     2161 cagactacga attaactcca gatgttgcga ttgtcgatgc acaatatgta actactgttc
     2221 cagcacacat tactgctgac actggtatgg acgttctaac tcacgcaatt gaatcttatg
     2281 tatccgtaat ggcaagcgat tatactcgtg gattatctat ccgcgcaatc gaacttgtat
     2341 ttgaaaactt acgtgaatct gttcttactg gtgatccaga tgcgcgtgaa aaaatgcata
     2401 atgcttctgc cctagctggt atggcgtttg caaatgcgtt cctaggaatt aaccacagct
     2461 tggcacacaa aattggacct gaattccaca ttcctcacgg tcgtgcgaat gcaatcctta
     2521 tgccacatgt tattcgttat aacgcactta aacctaaaaa acatgcgtta ttccctagat
     2581 atgaaagctt ccgtgctgat gaagattatg ctcgtatctc tcgtattatc ggcttccctg
     2641 cagcaactac agaagaaggc gttaaatcac ttgtagatga aatcatcaaa cttggtaaag
     2701 acgttggtat cgacatgagt cttaaaggac aaaatgttgc taaaaaagat ttggatgcag
     2761 ttgtagatac acttgcagat cgcgcattca tggaccaatg tactactgcc aaccctaaac
     2821 aaccacttgt aagtgaacta aaagaaatct acctagaagc ttacaaaggt gtttgaaact
     2881 agctaacttg tccaccatta atatataaag ttagaagaaa gcgcaagtcc atcccagggc
     2941 ttgcgctttc gctttagtac taaaattagt ataatggaac aagaatggag ttgatttaat
     3001 gatacaagca acggttccct actttacttt tgacggggag gccacagaag cactagattt
     3061 ttataaaaaa gtgtttcaag cagaaattac gcaaatgcgt tattttcacg agctggaagg
     3121 attctcagga gataaaaaac aaggagaacg aatcctccat gcaagactta cgaaagacga
     3181 gaaagattta ttttatttct ccgacacgct cgaaggcgaa acagacgcgg gcaatcgcct
     3241 agcacttgcg gtgaatttta gttcggaagc agattttgta catgcctttg tcctactatc
     3301 caaaaccggc accatcgaaa ttccgattca aaatacattt tgggacgcaa aatacgcgaa
     3361 agtaatcgat cattacagca tagattggca ccttaactta gaaaatgagt ctactactaa
     3421 agtatgattt tttcccgtcc tctagccgaa tgtaattaga actaaaaaat agtacaattt
     3481 tagtagtgag agaaaaaaag gagtgagttc atgactgaga cagttttaaa attagaacat
     3541 gtcacgaaaa aaatcggaca aaaaaatatt gtccacgata tcagctttga catacataaa
     3601 ggagaagtat ttggtttact tggcccaaac ggtgctggta agacaactat aatccgctct
     3661 atcgttggtt taattcgtcg ctcagaaggt accgttttta ttaatggtaa aaatgtcgac
     3721 acagaatata aagcagcgat ttcagaagta ggtgctatta ttgaaaatcc agaattttat
     3781 atgtatatgt ctggatgggc aaacttaaag caattcgcac gtatgagtca aaaaaacatt
     3841 actgacgaac acgttcgtga aatcgttgaa cttgtaaagc ttactggcgc aattaatcag
     3901 aaagtaaaaa catattctct cggtatgcgt caacgtttag gtgttgcgca agctttaatt
     3961 catagccctg ctttacttat cttagatgaa ccaacaaacg gacttgatcc acaaggtatg
     4021 gccgaattca gaacgctgat tcgcgattta gcgacaaatg gtacttctgt tttaatttct
     4081 agccatttac ttagcgaaat ccaacaaatt acggatcgat ttgcgattat taacaaaggt
     4141 gttctaacgc acatcgaaaa aatgagcgac ctaattgaaa atcatgtcgc tgcttataaa
     4201 ctaaaagtta gcgatcccga agcaactaaa accgttctcg ctacactccc agtcaagctt
     4261 gttgctcaaa atgaggatct attcaaaatc gaagtggctc acgaagatgt acatctaatt
     4321 gctcgtgcgc ttatccaagc aaatattgat ttattagaaa tggttccact tcaagcctcc
     4381 cttgaagaac gattcctcga attaactaaa ggtggaggtg cagaagtatg atagcattag
     4441 taaaaaatga atttaccaaa ttattttcca gaaaatcaag ttggattatg caaatcgtct
     4501 tatttgtagc agttttagct cttgctcttc ttatgttttt tgttagtaaa atagatacta
     4561 gtggtatcga aggcggcgac gcaagcaatg ctggtattac cgcttactat gacgataaag
     4621 gtgccccggt tagcgaagaa gaatattgga actccgcaga taaagatggt aatcctacgt
     4681 ataaatctga aacgttatct ttaactgatt ctgttgctta cttaaaaaca caagaacaag
     4741 cggctccaac aaaagaagcc aaagaaacta tccaaaaaca aattgatttt taccaagctt
     4801 atgtcgatgc agatgaaaaa cccgctagta attcagcagg tatttcaagc gcagatttct
     4861 tcgcttcatt aggtagctca ggagccgttg cgacaatgct tgttgttgtt gtagcaagta
     4921 tcatcgttgc aacagagttt tctggtggga caatcaaact tttactgaca cgtccttatt
     4981 ctagaagtca gatactattt tccaaatacg taatgtgtat cgtttacagc attattagct
     5041 ctatcacatt acttgtagct agctttatct tttcatttat tttaccaaaa caatctattt
     5101 ttatgccgct ctccccttca acgggtgcaa tgactgcttt cgaacatgcg tggatgctac
     5161 ttggtacgaa cttcttactg atgatcgtat acgcaactat tgctttcttc ttctcctctg
     5221 tcgttcgttc acaagcactt gcagttggtg tcggcgttgg tgtactattc tccggtggaa
     5281 ttattcgcca attactacct ctcgctatcg aaaaatacga ttggatgaaa tggattatct
     5341 tcaacttgct cagcctaaat gacacagttg gcggttctaa aatcgctggt ggcctagcag
     5401 attggcaaat aatcgccggt ctaggtgttt atacagcgat tatccttttc ttcactttct
     5461 tcttattcaa aaaacgagat gtcgctttaa gttaaatatt aaaaaggctg tccgcattgg
     5521 acagcctttt tttaatgcct aataatttga attttatcgg tctgatttgt atcaattctt
     5581 gcagttccgc caatcgggaa tgtcgcaatt ggctgtgtat gaccaaaatc cgcaccagat
     5641 ataactggga ttttttgtaa tgccgttttt gtttcaataa tatatgctaa tttctccgct
     5701 gtcatcgctg tcttctgttg gaaacgaccg attaccagcc cttctatctc acctgcaccg
     5761 ggttgactta atagcgattc taaatcccgg tcgaatgttt ctggaacagt cataaaatca
     5821 tcttcaataa ataaaatggt acctgctaag ttaggcatgt actcggttcc ttggagtaaa
     5881 ttaagcgtac ataagttccc gccaatgatg attccttctg cctctccagg ttgcataaca
     5941 actaatccct cattcggaat aaaatttctg ttctcttggt ccaaatacca ttcatcgtca
     6001 ctccatgcag cactttcttt aagcgcaaac ggctcttttt gcaataaaca cttgctaaat
     6061 gagtccatta cgtagtccag ccctttctcc attgaaaaac ttgaaaaatg agcgcctgaa
     6121 taagtgataa gttccgtttg cgtataaata gcggttgcta atgccgtgat atcggagaaa
     6181 ccacataaaa ttttaggatt ttccgaaatt aactcataat ccaaatatgg caacaattga
     6241 ttgctattaa aaccaccaat aaccgtcaaa atcgctttga cactcgaatc attaaaggct
     6301 tcatggatat cagcaactcg cgaacgaatg cttgaactca tcatgcaatc catttctgct
     6361 acatgttcgc caaaagtcac tttaaaaccc atgtccgtta ggcgcttaac ggcaatttcc
     6421 acttgattgt cagccataat accgatagaa cgacttggtg caataatccg aatttcatcc
     6481 ccttgtttta atttcgctgg aatcatttcg tcgcctccct attaaatgta tgaaatgggc
     6541 atgaacgtaa atggtcatcc aaaatcccaa tagcttgtaa ataagaatac acaattacag
     6601 ggccaacaaa cttaaaacca cgtttcttta aatctttact gattttttct gatagttctg
     6661 tgcttgcagg gacctctccc atgccttgcc attcattaat aatacggtca ttattcgtaa
     6721 aaccccaaat atagtttgca aatgagccga attcagcttg gactttttgc gtagctaggg
     6781 catttgtacg aactgctttc actttaaggc gattctttac aatagccgct tcttcgacaa
     6841 tcgtcgccag ctcatcgtct gttaggcgtg cacatttatc aatatcaaag tgaaaaaaag
     6901 cttcttgata ggcttttctt ttatgtaaaa ttaatctcca tgagagtcca gcttgtgctc
     6961 cctctaaatt gagcatttca aataaatatg tgtcgtcttt actcggaaca caccattctg
     7021 tatcatgata ttctagttca aacgggtcat taatcgacca agggcaacgt aattcttcag
     7081 acaaagcgag ttcctcctat atagttaaaa tgtaatacac actgatcaaa acagccacaa
     7141 atagtccgac gcaactccaa attagtcgtt tctctttcca ctgactaact gccacagcaa
     7201 tgcttaatgc taaaaataaa aagagtagcc agtttggaac atcggggtga tagttgctcg
     7261 taaaaataag ataccctatt actgctgcaa ttattccagt cactataaaa ctgattttct
     7321 gatacctcat tcgctcaagc ctcctattaa ccaataataa aacatacgtt ctatttttgc
     7381 aagcaaaaat aaaaaagaga cgaactttat tgctcgcctc tttttaaagt tatttcaatt
     7441 tgccacgaag aaccattggt aaaattccgc cgtgacggta atagtcaatt tctacttcag
     7501 agtcaaaacg tgcaagtgct tcaaaagtga agcttgagcc gtcttcacga acagcggtta
     7561 cttttacaag gtctcttggc gctacctctt caccgatttc cacttgcaag ctttctgaac
     7621 ctgttaaacc aagcgtttct gcgtcttcac ctggttggaa ctgaagtggt aaaacaccca
     7681 tcataacaag gttagaacga tgaatccgtt catagctttt cgcgataact gttttaattc
     7741 ctagcaagtt cgttcctttg gcagcccagt cacgagagga tcccattcca taatcgtcac
     7801 cagcaagaat gactaaacca gtattatttt cgatatattt tctagaagca tcataaattg
     7861 acatcacttc gccagttggc cagtaagtcg tatagccacc ttctgtacct ggtgcgattt
     7921 gatttttaat acgaatattc gcaaatgtcc cgcgcatcat cacatcatga tgaccacgac
     7981 gagaaccgta tgagttgaaa tcacgaattg ccacgccttc ttcttgaagg aattttccag
     8041 ctggggtatc tttgccgatt gctccggctg gcgaaatatg gtcagttgta actgaatcac
     8101 caaatttacc aataacgcgg agaccagata agctttctac tttgccagct tctttcgcta
     8161 aattatcaaa gaatggtggg ttcgcaatat acgtagagtt ttcatcccat ttgtataggg
     8221 catcttctgt tgtttcaatc gcattccaag cttcgttttc atcaaataca tgagcatatt
     8281 gttcacggaa aagttctggt gttaccgttt cttctactaa tgccttcact tcttctgaac
     8341 ttggccaaat atcgtctaag aagacttctt cgccattatt accgcgtcca attggttctg
     8401 ttagcatgtc gacatttgtt gtcccagcga gcgcataggc aacgactagt ggtggtgaag
     8461 ctaggaagtt tgctttcaca agtgcatgaa tacgcccttc aaagttacgg ttaccactta
     8521 ataccgcaga aacaagcaaa tcactgtctt gtattgcttc ttcaatttct tcttttaacg
     8581 gaccagaatt accgatacac gtcgtacaac catagccaac aaggtcaaac ccaagttttt
     8641 ctaaatatgg aagtaagccg gctttttcca agtaacctgt tacaacttta gagcctggcg
     8701 ccaaggatgt ttttacgaat tttggtactt ctaagccttt ttcgactgct tttttagcaa
     8761 ctaaaccagc gcttaacata acatatgggt tagaagtgtt cgtacaactt gtaatcgccg
     8821 cgattgcaac cgaaccagtt ttcatagtgg attgatcgcc attaccaaaa gtaacggtta
     8881 cttctttgtc taaggctgat ttatctagtc cgaaaccttg gttgcctgct ttggcagtaa
     8941 tcgattcccg gaatgtttct ttcattttcg aaagagggat caaatcttgg ggacgttttg
     9001 gccccgccaa gtttggttca atcgcggaaa gatcgatttc cacgatttgc gtgtagtttg
     9061 gttctacttt ttcaggtgtg aagaataaat cgtttgcttc taaataagct tctactaatt
     9121 cgatttgttc tttgtcacgg ccagttagtt ttaaataatt aagggcttct ttatctactg
     9181 ggaagaaccc acaagttgcg ccgtattctg gagccatatt cgcaacggtt gcacggtcag
     9241 caagcggaag tgtcgcaaca cccggaccat aaaattcaac aaatttacct actacttttt
     9301 gttcccgtaa gacttgggta acttttagag cgaaatcagt tgctgttgcg ccgtttggta
     9361 aagcacctag caatttcaca ccgataactt ctggaattgg gaagtaagat ggttgaccga
     9421 gcatgccggc ttctgcttca ataccgccca cgccccaacc taatacacca ataccgttaa
     9481 tcatcgtcgt atggctatct gttccgacaa gggaatctgg aaacgctaca aattcgccgt
     9541 ctgctacttc attcgcaata acgacgtttg ctaaatactc taagttaact tggtgaacga
     9601 tacctgttgc aggtggtact gcgcgatagt tatcaaatgc tttttgcgcc caatttaaaa
     9661 actggtaacg ttccatgttg cgcttgaatt cgagttccat attgattttc agtgcttctg
     9721 gattcgcata gctgtctact tgcaccgagt gatcgacgac taaatcgacc gggatttccg
     9781 gattgatttt ttcagggtcg ccgccaagat ctgccatggc tttacgtaaa gaagctaaat
     9841 caaccactgc aggaacacct gtgaaatctt gtaaaataac acgggctggt ttgaatggta
     9901 cttcgccttc gtttccatct ttagaccaat gggctaaatc ttctacatgt gagtccttaa
     9961 ttactctgcc atctgcttgt cttaaaacgg attcaagtaa aacacgtaca gaataaggta
    10021 atttctcgat gtttgtaagc ttgtcctctt ctaaggtttt aagtttgtaa taatgatacg
    10081 ttttgtcgtt tagttgaaat gatgcttttg ctttttcttt ccaattagtc atccacgttt
    10141 cctccttcaa ttcttgaaac gattggtctc tctcatctat tgtacttaaa aacgggcgat
    10201 aagtaaacaa agagaatccg ctataattcg ataacttttt cttatagcaa aaaaatgaat
    10261 gacaacgagt gccattcatc tgtactttaa acacctaaat tggttaatgc ttgttctaaa
    10321 gagccaaatg attcgagttt ggaaatattt gaaccaactt ggattgtgcg ttgagcgaaa
    10381 cttgggcgca taccagaaag tattggtact aagccaatta atttaaaaga ttgaatcatt
    10441 tcctccatat gtttggttgc gaaatcatct tttaatacag cactggaaaa atcaatgaca
    10501 atcgtatcta aattcagctt atccgcagat tctactgctt tctctttcat aaaataacct
    10561 ctatcgtcat ctaaactacc aacaattggt aaaacgccaa tagaatcatt tattggaata
    10621 attcgcgtgg ataattgaat gatttctttt cgctgagctg ctacttgatt tctattttct
    10681 tgcataaatc cttctaacaa ttgttgttga atggatgaaa gcgtatcttt tatatcaagc
    10741 ataaattgga taatgtcagc atccgtatag aaaacatttt ctgcttcctt ccacttcact
    10801 aagctagtaa tgatatattt ttcaacttca ctcatatgtt gatgaatttt tctaatatcc
    10861 gtcttatcat tgaagcgtct tttaccgata ctttcaaaat ctcgttcttt cacgccggta
    10921 atgacatcaa taatcatgcc acatga
//
LOCUS       DASEAA010000086        10841 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.086, whole genome shotgun sequence.
ACCESSION   DASEAA010000086 DASEAA010000000
VERSION     DASEAA010000086.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10841)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10841)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10841
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.086"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            43..1086
                     /locus_tag="U0342_001812"
     CDS             43..1086
                     /locus_tag="U0342_001812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465613.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2423157.1"
                     /translation="MKNTIKWIAIGFAGIILLPLLIVFFIYKKAVGKKEYNPEVLENL
                     DEASQKFVKNTSPLSDVDSRYKYMRLATKALPSAKDIEIGDVENKKIDGPAGKIPIRI
                     YTPQEDGPFEIIVYYHGGGFVLGGLQTHDAIARKLVQTTGARVVTVDYRLAPENPFPA
                     AVEDAYAALLWVQNHRTSLRAKSSDIIVAGDSVGGNLATVVTQIAKSKGKPNITAQIL
                     LYPATDIFSRDASVLYPSMDEFAEGYVLTKESLDKFFKLYIANASDRKYDPLVAPIRS
                     KDLVGLPKTFIATAEFDPLRDQGEAYAKKLKDAGVEVFAKRFEKVPHGFMTTNSEATD
                     ETYELISEFLEEK"
     gene            1197..1787
                     /locus_tag="U0342_001813"
     CDS             1197..1787
                     /locus_tag="U0342_001813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2423158.1"
                     /translation="MRKEEIKQAALTLFANNGFEGTSLADIAGVVGLKKQSIYSHFKD
                     KDDLFLSIMKDAKSTEIDYYRAKLRDSDLSRPDLVLSSLLFGVKELYDTDEAYQFWLR
                     YGFYPPKHLYEVVQADITENVLQMEHEFTNLFSNWMEQKLIPMQDVETMKEAYMGILD
                     AVIVDIVYVNDPERTEKKITALWQIFWRGITLKALN"
     gene            1797..3128
                     /gene="fepA"
                     /locus_tag="U0342_001814"
     CDS             1797..3128
                     /gene="fepA"
                     /locus_tag="U0342_001814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MATE transporter FepA"
                     /protein_id="HEM2423159.1"
                     /translation="MAKNMEILETDSVKKIYFRYLIPSLVGMLLMSLNIVIDGIFVGH
                     KLGGVALAGINIAVPVFTIFTAISIWIGIGAATQFSFAIGEKNVAKAQTIFTNAILAV
                     VSITVIIGIIAFIFKVPLAYFLGANDDTIGYVLEYMNILLVFGFALTLENILSIFVRN
                     DGDPNLSMIALIVTAISNVILNYLFLFVFEWGVTGSALATMIAIIIGVLILITHFFKK
                     SSRLKFVKVDWNKAFFKKTLAIGLPSFLAEVGVSVFTLGYNISIAAIAGTAGVAAFSV
                     LNYTHSVILMLFLGMGSAIQPLISYYRGAKARQKEIETLKIAIMVAFSTGVGFLLVGL
                     FGSNLLVSMFGNFSPEIKDLASNGIKLFYTAYLFMGFNFVMMTYFQTSDKVKMATWIT
                     ISREIIFMVIFLLVLPPIIGIPGVWLAIPISEMIVAASIIFYMKKKHILFK"
     gene            3764..5035
                     /locus_tag="U0342_001815"
     CDS             3764..5035
                     /locus_tag="U0342_001815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2423160.1"
                     /translation="MNLIGLRIKNIRKEKQLTLKDVAQGIISVPYLANIENGIKVASL
                     ETLIHIARRLEIPEEVLLMSEDEENRALLKELDEIFKLLVCSNPKEIESRLKKIAENV
                     ELQHESPAVELSFYCLQVAFYYKTWKFSRAEEVEAKYLKNAEKRVENAFPPQLLSYYY
                     YGQAVKHSHATCNYQLAVEYWEKCVALTDNKNFLTVFHVCICINYICQSIYEPALGHI
                     QQAWDLIKDEEQERFVSILYFYGYIYFQIGFIGEAKYRFKQAQKYFSKYPEAKKIYYF
                     VVQLKMAEIENIEGNETLFYEKITCLYKEIMAYKTTNISFNNNDYLVITELMVIFAEK
                     GFVEEATSLMGLMNTVVERVQELNYFMEYTEILLLYQQDEQVSYEKKMIQLLKKINAS
                     NDPALIERVKKHASKHFAKSTKYKMAYDILS"
     gene            5132..6820
                     /locus_tag="U0342_001816"
     CDS             5132..6820
                     /locus_tag="U0342_001816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2423161.1"
                     /translation="MQKKLIGSLFILIVLLIIGSTSEKVQASPTSSNGWQLKWAIKNN
                     DFEDVDIEDYGVDAGTTNVWQVNQKGVEAWGTTNPTGNIEVWQNGNGYNVPAFSGNNF
                     IELNSDGIGPVYQDIRTIPGSNLTWKFSHRGRMGVDTADLLIGSPESQTEVSRVSDGE
                     TWGSFEGNYIVPEGQTITRLTFNPISTASGSLTSGNFLDDIQLYINVNGAKIGDVVWY
                     DFNGDGIQQDSEEPAPFVKVDLLTKDGVFKESATTNNIGSYLFTDVLPGDYQVKFTLP
                     NNDFIFSKANQGNDTTLNSKPDKTGIASVNVPNLKSENFDMDAGITTNGKVEIQKFSG
                     DKALSGAVYAIKDNSQSEVAKITTGQNGTGTAEGLPPGKYTATEVTAPLGYQKNPTPK
                     TFTITYGDTNPVKLTFQNVEKTGSITIFKQDEANKKGLANAVFDVKSTDGTTLKKVTT
                     NSKGYALAENLQPGTYVITEATAPPGYEKSTKEIRVTIPFNPQKTINISFSDNKIMVP
                     KKPTPTKGSTVVKVSGETTKITALPQTGDSSNSSTIFIGLLIVVVSGLFVYRRY"
     gene            complement(6873..6956)
                     /locus_tag="U0342_001817"
     tRNA            complement(6873..6956)
                     /locus_tag="U0342_001817"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(6920..6922),aa:Leu,seq:gag)
     gene            7088..7981
                     /locus_tag="U0342_001818"
     CDS             7088..7981
                     /locus_tag="U0342_001818"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphotransferase family protein"
                     /protein_id="HEM2423162.1"
                     /translation="MDVTQLKMLHNAKVISEINKGFSVDRKYQVDETYLVRVFPIDLL
                     QEREQEFKIIQALDSQTPFVPKAYDFGFIEREGYMIISYLRGEDAEIGMTRLSHSEQL
                     KAGFSAGEILREVHKIPLAIPKMNWLDFQTVKFERKVKELKELEITASFLTDTEKFVN
                     ENIARLKNRPICLQHGDFHPANIILNNKKFVGLIDFNRLEFGDPLFDLAKIGFFTTEV
                     SIPFARGNILGYIDKEEVTDFWNLYALYTAMHITSAVNWAAKNESRNFKKLMDYAAKT
                     VASHDNFQRIVPNWMNEEEFK"
     gene            7978..8604
                     /locus_tag="U0342_001819"
     CDS             7978..8604
                     /locus_tag="U0342_001819"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465607.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GyrI-like domain-containing protein"
                     /protein_id="HEM2423163.1"
                     /translation="MTEKKIDFKKEEKKFYAPKRKPERIFVPEMNFLMVDGKGDPDGE
                     AYQKAVQSLYAIAYTIKMSKMGETRLDGYTDFVVPPLEGFWWSEERFDLKDRDAWLWT
                     SILRQPDFVTEEVLEWAKEVAKKKKPDLDTSHVKLVRFEEGECVQMMHIGPFSEEVKT
                     VAEMHQFMETEGLHNDTGAVRKHHEIYLSDPRKVDPEKMKTILRLPVS"
     gene            8710..9099
                     /gene="crcB"
                     /locus_tag="U0342_001820"
     CDS             8710..9099
                     /gene="crcB"
                     /locus_tag="U0342_001820"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEM2423164.1"
                     /translation="MYFLYVGVFGALGGMCRYAMNLWLGGGDFPSATLAVNLIGCFLL
                     AFLMQFLAEKSRISLVILNGIGTGFIGAFTTFSAFSVDTIQLVQSGAWLFAVSYVLAS
                     FIGGLIMVKFGRMLSNKLLNRGEHRVS"
     gene            9089..9445
                     /gene="crcB"
                     /locus_tag="U0342_001821"
     CDS             9089..9445
                     /gene="crcB"
                     /locus_tag="U0342_001821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465605.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fluoride efflux transporter CrcB"
                     /protein_id="HEM2423165.1"
                     /translation="MLVNFVLVGFGAALGAMLRYGISVLVKSKWKTNFPFATFFINIT
                     GSFLLGFLVSSALGPVWQLFLGTGFMGGYTTFSTFKVESMELKWKTNYRVLFSYLGCT
                     YVFGLIAAFLGLMLGV"
     gene            9540..9920
                     /locus_tag="U0342_001822"
     CDS             9540..9920
                     /locus_tag="U0342_001822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465604.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423166.1"
                     /translation="MTGFKKVILPVLLVVLFLAGCNQAEVPALVLDGTVTDTSLLENN
                     NELTVNGTLTWSGEKNNYASEVLITVSSNTAVTNATTGKAMKLADIKEEDTVRAVFPQ
                     GSNITSPAPGKVSENATSLKVTPK"
     gene            10054..>10841
                     /locus_tag="U0342_001823"
     CDS             10054..>10841
                     /locus_tag="U0342_001823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465603.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423167.1"
                     /translation="MMKKGILLSILLALVLVISACGESAEEKAAKTPQGKFVQTMKNG
                     MNVPDQSTYTTSFAVNDINVSSTDPSAQTMGILKDIKLSVTTSTDKKANKSEAKFNVT
                     STNNLLPISMDLDFLVDSKTGNAYIPLKTIVEPDASLLSYLDQATGGMWSKINTDYPD
                     LKNKYLSTEELTSSLTDQPEAKTAVDTKEIEAATKDLNKKAIKLVDTYFTGLEKDRFK
                     EADDGTVSVTIKNADIANLMNQVAKLMDDEKVKADLKVIAESQGS"
BASE COUNT         3600 a         1633 c         2330 g         3278 t
ORIGIN      
        1 ctatacttgt taatgaagtt atattgaagg agttgagcga atgtgaaaaa tacaataaaa
       61 tggatcgcta tcggttttgc tgggatcatt ctacttccat tattaatcgt tttctttatt
      121 tacaaaaaag cggttgggaa aaaagaatat aatcccgagg tactggagaa tttagatgaa
      181 gcttcacaga aatttgtgaa aaacacttca ccgttatccg acgtagattc gcgatataaa
      241 tatatgagac tagcgacaaa agcattacct tcagcaaaag atatcgaaat tggcgatgtt
      301 gaaaataaaa aaattgatgg cccggctggc aaaattccaa ttagaattta tacgccgcaa
      361 gaagacggac cttttgaaat tatcgtttac tatcatggtg gcggatttgt tctaggcgga
      421 ctgcaaacgc atgacgcgat tgccagaaaa cttgttcaaa caacaggcgc tcgcgttgtt
      481 actgttgatt accgacttgc tccagaaaat ccattcccag cagcagtgga agatgcctat
      541 gccgcgctac tatgggttca aaatcatcgt actagcttgc gagctaaatc ctcagacatt
      601 atcgttgcag gagatagcgt aggaggaaac ttagcaaccg ttgtgactca aattgctaaa
      661 tcaaaaggta aaccaaatat cactgctcaa attttacttt atccagcgac agatattttc
      721 agtcgtgatg cgtctgttct ttatccttca atggatgaat ttgcagaagg ctacgtgctt
      781 acgaaagaat cattagataa attctttaaa ttatatattg cgaatgcaag cgatcgtaaa
      841 tacgatccac tcgttgcacc aatacgtagc aaagatttag tcggacttcc aaaaacattt
      901 attgcgactg ctgaatttga tccacttaga gatcaagggg aagcatatgc gaagaaatta
      961 aaagacgccg gcgtagaagt atttgccaaa cgctttgaaa aagttccaca tggcttcatg
     1021 acaactaact cagaagcgac cgatgagaca tacgaattga ttagcgagtt tttagaagaa
     1081 aaataaatcc atgaatccac tcttttatta gagtggattt ttttgttgac aaagaaattt
     1141 tttcgtgaga gaatgactta cgaacggtcg tcagtttttg cgagaggagt ggaatgatga
     1201 gaaaagaaga aatcaaacaa gctgcactga cactttttgc taataacggt tttgaaggaa
     1261 catcgcttgc tgatattgca ggggttgtgg ggctgaagaa acaatccatc tattctcatt
     1321 ttaaagataa agatgatttg tttttatcca ttatgaagga cgcgaaatca acagaaatag
     1381 attactaccg ggcaaaactt cgggatagtg atttatccag accagatctt gttttgtcta
     1441 gtttactttt tggtgtgaag gaattatacg atacggacga ggcctatcaa ttttggttgc
     1501 gttacgggtt ttatccgccg aagcatttgt atgaagtggt ccaagcagat attaccgaga
     1561 acgtgctaca aatggaacat gaatttacta atttatttag caattggatg gagcaaaagt
     1621 taattccaat gcaagatgtg gaaacgatga aagaagctta tatgggaatt ctcgacgcag
     1681 ttatcgtaga cattgtgtac gtgaacgacc cagaaagaac ggaaaagaaa atcacagctt
     1741 tatggcaaat tttctggaga ggaattacgc taaaagcttt gaattagagg tgtagtatgg
     1801 caaaaaatat ggaaatttta gaaacagatt cagttaaaaa gatttacttt agatatttaa
     1861 ttccttcctt agtgggaatg ttgttaatgt ctttaaatat tgtgattgat ggaatttttg
     1921 ttgggcataa gctcggcgga gtggcgctgg ctgggataaa tatagcggtg cctgtattta
     1981 cgatttttac agcgatttct atttggattg ggattggtgc tgcgactcaa ttttcctttg
     2041 cgatcgggga gaaaaatgtc gcgaaagctc aaacgatttt caccaatgcg attctagctg
     2101 ttgtttcaat cactgttatt attggaatta tagcgtttat ttttaaagta ccattagctt
     2161 attttttagg tgcgaatgat gatacgattg gttatgtgct cgagtatatg aatatcctgc
     2221 tcgtatttgg atttgcgctt acactagaaa atattttaag tatttttgta cgtaacgatg
     2281 gcgatcctaa tttatcgatg attgcgctta ttgtaacagc aatcagtaat gttattttga
     2341 actatttatt cttatttgta ttcgaatggg gcgttacggg ttctgcgctt gctacgatga
     2401 ttgcaatcat tatcggtgta ctcattttaa ttacccattt cttcaaaaaa tcaagtcgtt
     2461 taaaatttgt caaagtggac tggaacaaag cgttttttaa gaaaacttta gcaattggct
     2521 taccgagctt tttagcggaa gttggggtgt ctgtatttac gctaggttat aatatttcga
     2581 ttgcggctat tgctgggact gctggtgtgg cggcgttctc ggtactcaat tatacgcaca
     2641 gtgtgatttt gatgctgttc cttggaatgg ggtccgcgat tcaaccactt attagttatt
     2701 atcggggcgc gaaagctaga caaaaagaaa tagaaacgtt gaaaattgcg attatggtag
     2761 cgttcagcac tggagtaggc tttttgctcg ttggtctctt cggttccaac ttgctcgttt
     2821 cgatgttcgg gaactttagc ccggaaatta aagatttagc aagtaacggt atcaaattat
     2881 tctatacagc ttatctgttc atgggcttca actttgttat gatgacctat ttccaaacat
     2941 cggacaaggt aaaaatggct acatggataa cgatatcgcg tgagattatt ttcatggtca
     3001 tcttcctatt agtgttgcca ccaatcattg gtatcccggg cgtttggcta gcaattccaa
     3061 tttcagaaat gattgtagca gcatccatca tattctatat gaagaaaaaa catattctat
     3121 ttaaataaaa atgagacaaa gatagatgat atcttcgtct ttttaggaaa ttaatactaa
     3181 atatggactt gaaaaaggtg gaagtaagat gaattttcct ttttagagat aaattgaatt
     3241 tgaatggtaa aatgaaaatc tacgtttccg tttttgcgta gacaggtttt aaaagggaat
     3301 gtgtagagaa aatttataga ttcgataagg gatagagtct ataaaacttg ttgttttatt
     3361 aacggagtag tttgcatgtg ggagcaaact aagaagtaat aaaatgtcgg tattaggtga
     3421 aatttaggaa ttcaaaagga aaatttttat ttcacctatg ccggacaaca aaaaatccac
     3481 agcgatgatt atggcaaatt agtgaagctt ttttcaaaat agctatacag gagcaaatat
     3541 aacaaaacgt tttaggtcca agagcaatca tgcttttttt gatctaaaac gttttctatg
     3601 taagggcgaa cgctttaggt tagtagttta aaaaagctaa tttaacaagc ttttttagaa
     3661 aatataaaaa tgaaagcaaa aaagtagctg gaaaaagtag ttgttttcca tttcgaaatg
     3721 tttataatta agaggaaaat attgaaaaaa cggcggtgac atcatgaact taatcggttt
     3781 gcgaattaaa aatattcgta aagagaaaca gctgacatta aaagacgtag cgcaaggaat
     3841 tatctctgtg ccttatttag caaatataga aaatggtatt aaagttgctt ctttggaaac
     3901 gttgatacac atagcaagaa ggttagaaat accggaagaa gtgttattga tgagcgaaga
     3961 tgaagagaat agagcacttt tgaaagaatt ggatgagatt tttaaactat tggtttgttc
     4021 taatcctaaa gaaatagaaa gtagattaaa gaaaatagcg gaaaatgtag agctgcagca
     4081 cgaatcacca gctgtcgaac ttagctttta ttgtttacag gtggcatttt attataagac
     4141 ttggaaattt tcaagagcgg aagaagtgga agctaaatat ttaaagaacg cagaaaaacg
     4201 agtggaaaat gctttcccgc cccaattgct ttcctactat tattacggtc aggcagtaaa
     4261 acattctcat gcaacgtgta attatcaatt agcagtggag tactgggaaa agtgtgttgc
     4321 tctcactgat aataaaaatt ttctcactgt ttttcatgtg tgcatctgca ttaattatat
     4381 ttgccaaagt atttatgaac ctgcacttgg acatatccag caagcgtggg atttaataaa
     4441 ggatgaagag caggaacgtt ttgtctctat tctttatttc tacggttaca tttattttca
     4501 aattggcttt attggtgagg caaaatacag atttaaacaa gcacaaaagt acttttccaa
     4561 atatccagaa gctaaaaaaa tctattattt cgtcgttcag ttaaaaatgg cagaaattga
     4621 aaatattgag ggaaatgaga cgctatttta tgaaaaaata acctgtttgt ataaagaaat
     4681 aatggcctac aaaacgacta atataagctt taacaacaac gattacctag ttataacaga
     4741 actgatggtt atttttgcgg aaaaaggttt tgttgaagaa gcaacttcat taatggggct
     4801 gatgaataca gtagttgagc gagtacaaga actgaattac tttatggaat acaccgaaat
     4861 attgctttta tatcaacagg atgagcaagt aagttatgaa aagaaaatga tacaattact
     4921 gaaaaaaatt aacgcatcaa atgatccagc attaattgaa cgagtgaaaa agcatgcaag
     4981 taaacatttc gccaaatcaa cgaaatataa aatggcatac gatattttgt cttaatatta
     5041 gaaacagcta gttgttatac tggctgtttt cttttgcttt tttgcgggta attaaaggtg
     5101 ttaggtttag ggcgaaaaag ggggagaaag catgcaaaaa aaattaatag gtagtttgtt
     5161 tattctaatt gtcttactta ttattgggag cacttctgaa aaagtgcaag cttctccaac
     5221 atcttcaaat ggttggcaat taaaatgggc cattaaaaat aatgattttg aagatgttga
     5281 tatcgaggat tatggtgtag atgctggtac gacaaatgtt tggcaagtaa atcaaaaagg
     5341 tgtagaggcc tggggaacaa ctaatccaac tgggaatatt gaagtatggc aaaatggtaa
     5401 tggatacaat gtgcctgctt tttctggaaa caattttatt gaattaaact cggatggtat
     5461 tggtccagtt tatcaagaca ttcggacaat cccaggttcc aatttaactt ggaagttctc
     5521 acaccggggg cgcatggggg tagacacggc tgatttactt attggctcac cagaaagtca
     5581 aaccgaagtg tcgcgagttt ctgatggaga aacatggggg agttttgaag ggaattatat
     5641 agtgcctgaa ggacagacta tcacaaggct aactttcaat cctatttcaa cagcaagtgg
     5701 ctcacttacc agcggaaatt ttttggatga tattcagttg tatattaatg taaatggcgc
     5761 aaaaattggc gatgttgttt ggtacgattt taatggggat ggtattcaac aagatagcga
     5821 agaacctgct cctttcgtaa aggtagattt attaacgaaa gatggtgtgt ttaaagaaag
     5881 tgcgaccacg aataatatcg gctcttattt attcacagat gttttgccgg gggactatca
     5941 agtgaaattt accctaccga ataatgattt tattttttca aaagcaaatc aaggcaatga
     6001 tacgacgctt aattccaagc cagataaaac agggatagct tcagtaaatg tacctaattt
     6061 aaaaagtgag aattttgata tggatgcggg aataacgacg aatggtaaag tcgaaattca
     6121 aaaattttca ggagataagg cgctgagtgg agcggtttat gccattaaag ataattctca
     6181 atcagaagtg gcgaaaataa cgactggtca aaatggtaca gggacagcgg aagggctgcc
     6241 accagggaag tatacagcaa ccgaagttac agcacctctt ggttatcaga agaacccaac
     6301 accaaaaaca ttcactatca cgtacggcga tacaaatcct gtcaaactca cttttcaaaa
     6361 cgttgagaaa acaggatcaa ttactatttt taaacaagat gaagcgaata aaaaaggtct
     6421 agcaaatgcc gttttcgacg taaagtcaac agatggaacg acattaaaaa aagtaactac
     6481 aaatagtaaa ggttatgctc ttgctgaaaa cttacaaccc ggaacttatg tcataacgga
     6541 agcaacagca ccacctggct atgaaaaatc aaccaaagaa attcgcgtaa cgataccatt
     6601 taaccctcaa aaaactatta atatttcttt tagtgataat aaaataatgg tacctaaaaa
     6661 accgactcca acaaagggaa gtacagtggt gaaggtaagt ggagaaacga caaaaattac
     6721 tgctctacca caaacgggcg atagttcaaa tagctcaaca atttttatag gattgcttat
     6781 tgtcgtagtt agcgggttat ttgtttatag aagatattaa aaatacaaaa aaattccaag
     6841 gttagcttct aaccttggaa tttttttatt gatgcggccg agaggacttg aacctccacg
     6901 ggttttaccc cactaggccc tcaacctagc gcgtctgccg attccgccac gaccgcgtat
     6961 gcgtagcaaa actaattata atattgattc tgttattttg tcaacaaatt ctacgaagat
     7021 aattggaaaa aagtaagcgt attcttgtat aatgaagaat agtgaattta taggaggaga
     7081 gctgattatg gatgtgacac aactaaaaat gttgcataat gcgaaagtga tttcggaaat
     7141 aaacaaaggc ttttctgttg ataggaaata ccaggtggat gaaacttacc ttgttcgtgt
     7201 ttttcctata gatttacttc aagaacggga gcaagagttt aaaataatcc aagcattaga
     7261 ttctcaaact ccatttgttc caaaagcata tgatttcggc tttatcgaaa gagaaggcta
     7321 tatgattatt agttatttgc gaggcgaaga cgcagaaatt ggcatgaccc gtttatctca
     7381 ttcagaacag ttaaaagctg gtttttcagc aggggaaatt ttacgagaag ttcataaaat
     7441 tccgcttgct ataccaaaaa tgaactggtt ggattttcaa acggttaaat ttgaacgaaa
     7501 agtgaaggaa ttaaaagaat tagaaataac agcttctttt ttaacagaca ccgaaaagtt
     7561 tgttaatgag aatatagcta gattaaaaaa tagaccgatt tgtttacaac atggagattt
     7621 tcatccagcg aatattattt taaacaacaa aaagtttgtg gggctaattg attttaatcg
     7681 gttagagttc ggcgatcctt tatttgatct agctaaaatc ggctttttta caacagaggt
     7741 cagtatacct tttgcacgag gaaatatttt aggctatatt gataaagaag aagttacgga
     7801 tttttggaat ctttacgcgc tatacacggc gatgcatatt acttcggctg ttaattgggc
     7861 agcaaaaaat gaatctcgta attttaaaaa gttgatggat tatgcagcaa agacggtcgc
     7921 tagtcacgat aattttcaaa ggatagtgcc gaattggatg aacgaggagg aattcaaatg
     7981 actgaaaaga aaattgattt taaaaaagaa gagaagaaat tctacgcgcc taaaaggaag
     8041 ccagagcgta tttttgttcc ggaaatgaat tttttgatgg tggatgggaa aggtgatccg
     8101 gacggtgagg cgtatcaaaa agcagtgcag tctctttatg cgattgcgta cacgattaaa
     8161 atgagcaaga tgggcgagac gcgtctggat ggttacacgg attttgttgt accgccgctg
     8221 gaaggttttt ggtggtctga agagaggttt gatttaaagg atagagatgc gtggctttgg
     8281 acatccattc ttagacaacc ggactttgtc accgaagaag tgttggaatg ggcgaaagag
     8341 gttgctaaga agaaaaagcc tgatcttgat acgagtcacg taaaattggt tcgttttgaa
     8401 gaaggagaat gtgtgcagat gatgcatatt ggtcctttta gtgaagaagt gaaaacggtc
     8461 gcggaaatgc accaattcat ggaaacagaa ggacttcata atgatacagg ggctgttcgt
     8521 aaacaccacg aaatttattt gagtgatccg cgtaaagtgg acccagaaaa aatgaagacc
     8581 atccttcgac ttccagtgag ttgaataatt ggaatgtttt gcgttatagt atagtagaaa
     8641 taggacaaag gcgactgccc ggaatacaaa tatttcaggg tagttttttt gtgaagtggg
     8701 gtcttggaga tgtatttttt atatgtaggg gtttttggcg cattaggtgg tatgtgccga
     8761 tatgcaatga acttgtggct tggtggcggg gattttcctt ctgcgacatt agcagttaat
     8821 ttaataggtt gttttttgtt ggcttttctt atgcaatttt tggcagaaaa atctcgtatt
     8881 tcattggtaa ttttgaacgg gattgggact ggttttattg gcgcgtttac gactttctcg
     8941 gcttttagtg tagacacaat tcaactagtg caaagtggcg catggttatt tgcggttagc
     9001 tatgtgttag ctagtttcat tggtgggctt attatggtga agtttgggcg gatgcttagc
     9061 aataagcttt tgaatcgagg tgagcatcgt gttagttaat ttcgtacttg taggatttgg
     9121 agcggctctt ggtgcgatgc tacgatatgg aatttctgta ttggtcaaaa gtaaatggaa
     9181 aacaaacttt ccttttgcga ctttttttat taatattact ggttcatttt tattaggttt
     9241 tcttgtttcc tctgctcttg gaccggtttg gcaacttttt ttaggtacag gatttatggg
     9301 aggatatacg actttttcta cgtttaaagt ggaaagtatg gaattaaaat ggaagacgaa
     9361 ttatcgtgta ttattttctt atctaggttg tacctatgtg tttggcttaa tagctgcttt
     9421 tctcggtttg atgcttggtg tataagaatt gtttaagaaa caagaaaaca attgcctgta
     9481 tttctgctaa atgctatgct agaaagaacg ataagcttca gagaggacga gagagagcga
     9541 tgacaggttt taaaaaggta atattgccgg ttttactagt ggtactattt ttagcgggtt
     9601 gtaatcaagc agaagtgcct gctttagtcc ttgacggaac agtaacggat actagtttgt
     9661 tagagaataa taatgagttg acagtcaatg ggacattaac gtggagtggt gaaaaaaaca
     9721 attacgcaag tgaagtcttg attacagtga gtagcaatac tgccgtaaca aatgcgacca
     9781 ctggaaaagc aatgaaactt gctgatatca aagaggaaga tactgttaga gctgtatttc
     9841 cacaaggttc aaatattact tcacccgccc ctggaaaagt atctgaaaat gctacatctt
     9901 taaaagtgac tccaaaataa aagcgagcgt gcctttctaa aaggaacgct ttttttatag
     9961 gaatttgtgt cagactaatg aactattgta aattctcttg ttttcagacc ttaaagtgtg
    10021 ttaattttaa tgtattaatc acctaggagg agaatcatga aaaaagggat tttattatca
    10081 attttgttag ctttagtatt agtaattagc gcttgtgggg aaagcgcgga agaaaaagca
    10141 gcaaaaacac cacaaggtaa atttgttcaa acaatgaaaa atgggatgaa tgtacctgat
    10201 caatctacat atacaacttc ttttgctgta aatgatatca atgtttcaag caccgaccca
    10261 agtgctcaaa cgatggggat tttaaaagac attaagcttt ctgtaacaac atcaactgac
    10321 aagaaagcaa acaaatcaga agcaaaattc aatgtaacat caacgaataa cttactacca
    10381 atttcaatgg atttagattt tttagtagat agtaaaacgg gaaatgccta tattccactt
    10441 aaaaccattg tagagccaga tgcttcttta cttagttatt tagatcaagc gactggtggt
    10501 atgtggtcta aaattaacac cgactaccct gatctaaaaa ataaatatct tagtactgaa
    10561 gaattaacca gttcattaac agatcaacca gaggcaaaaa cagctgtaga tacgaaagaa
    10621 attgaagcag cgacgaaaga tttaaacaaa aaagcgataa aattagttga tacttatttc
    10681 acgggcttag aaaaagatcg ttttaaagaa gcggatgatg gtactgttag cgttacgatt
    10741 aaaaacgccg atatcgcgaa cttgatgaac caagtagcta aattaatgga tgatgaaaaa
    10801 gtaaaagcag atcttaaagt tattgcagaa agccaaggtt c
//
LOCUS       DASEAA010000087        10760 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.087, whole genome shotgun sequence.
ACCESSION   DASEAA010000087 DASEAA010000000
VERSION     DASEAA010000087.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10760
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.087"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..412)
                     /locus_tag="U0342_001824"
     CDS             complement(<1..412)
                     /locus_tag="U0342_001824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2423168.1"
                     /translation="MIEFFKTTNEKMEQISALEDGCWVKVTAPTDDEIEMLSKEMDVP
                     KPYILDALDSEERSRIELKRAEQDVRHSLVIVDYPYESEDELGYAMYETLPIGIVLTR
                     KHLVTITLRDLPILKDVQSMKLEEYDTTNHKQFLL"
     gene            510..794
                     /locus_tag="U0342_001825"
     CDS             510..794
                     /locus_tag="U0342_001825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423169.1"
                     /translation="MEFMSMIVTGIVLAAIISGLSFVVGKLSGLSWFWIAFCANSGFF
                     IIFITVQNSFPDNAAVALSYLNLGIGVVLIALTLFQSSNWLFKKTMQRKH"
     gene            complement(877..1716)
                     /locus_tag="U0342_001826"
     CDS             complement(877..1716)
                     /locus_tag="U0342_001826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464173.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2423170.1"
                     /translation="MAEISEELRLGEVVLNVGHLKEMADFYQEVIGLKLLEENERMVR
                     LGVSGSDEALLVLKKIDNAVVPEVPRIGLFHTAFLLPTRESLADVLLHLAKSGYPIDG
                     AGDHAYSEALYLHDIEGNGIEIYADRPKAEWMHDGDGNLPMVTEQVDVDSLLQIATDE
                     PFTGMPNGTIIGHVHLQVADADKAEQFYKEVLGMNLTTAIPSARFFAAGDYHHHIGSN
                     VWAGRNLELLQENETGLAWFTIITPDKDAIITNLIEQGYDVKRLENTISVTDSNGIKI
                     HFK"
     gene            complement(1806..3197)
                     /locus_tag="U0342_001827"
     CDS             complement(1806..3197)
                     /locus_tag="U0342_001827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2423171.1"
                     /translation="MNSLFRRKPIEDLMHNKSGSTHLKQTLGPLDLTLLGVGAIVGTG
                     IFILPGTVAAKNAGPAIIFSFVIAAIVCAIAAMCYSEFASSVPVAGSAYTYGYVVFGE
                     LIGWLLGWALILEYGLAVASVASGWSSYLNALLSGFHISIPEAISGPFNPEVGTFINL
                     PAIIIVLVIAFLLTLGIKESTRVNTIMVVIKVGVILLFLVVGVFYVKPDNWQPFMPFG
                     ISGVMNGAALVFFAYLGFDAVSSAAEEVKDPQRTMPIGIIGSLLICTVLYVAVSAVLT
                     GMVPYTDLNVTDPVAYALQVINQDWVAGIVSLGAVVGMITVILVMSYGATRLIFAMGR
                     DGLLPKVLAEINQKYQTPVKNTWIFAVIVAIISGLVPLDRLAELVNIGTLLAFMMVSI
                     GIIFLRKNKDIQARGFKVPFYPVLPIVSFLLCAFLISRLSVHTWILCGIWFVIGLIVY
                     FAYGRKHSELLKK"
     gene            3432..5252
                     /gene="ltaP"
                     /locus_tag="U0342_001828"
     CDS             3432..5252
                     /gene="ltaP"
                     /locus_tag="U0342_001828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoteichoic acid primase LtaP"
                     /protein_id="HEM2423172.1"
                     /translation="MILFYFLLIIGKFTFAYFQIFKDPNFLALGMDLLFIVLLLGLIH
                     LFAPVRSHIYWYAGMSLFIGILMLVCVLYARFYNEVPTYHSFSLIGEVGVVKNSATSL
                     LSGTDWLYILDIVLLPFILYFHIKKGHEFPSFRITSRVYGVSFISTLLVLSGFTYFMM
                     QQNIISDSKRAKRMGIFTFNISTALTGADHVKAADITAKNVNDIKGVSVKSNPDYFGA
                     AKGKNLIIVQLESFQRNLTNVKINGQSITPTLDSLQNETMYSNQFFQTVSKSNTADAE
                     WSVYTSTFPSGYYTNTQTYGDRVIPSMPRLLGKNDYKTATFHTNDASFYNRDEFYPAV
                     GFDKFYDRKFFGDEDVIGFSPSDEVLYNKAFPILEEQYKNNQKFYAQLISVSSHMPFD
                     IPKDKQEIDLPSDLKDTELGNYFEAVHYADKQLGEFIQKLKDSGIWDDSVVVFYGDHH
                     IIKTDQLPEEQKKYVNRSTELKADPADDYRIPFFLHYPGMENPGEIKNVGGEIDIMPT
                     VMNLLGIKTGDQIMFGTDILNSSNNYVPERYTMPEGSYFTNSYMYQPDESFETGAATN
                     YDGTNKELSSDVKKRFDASRKLLQYSDSYVNNLPLRDEDK"
     gene            complement(5295..5945)
                     /locus_tag="U0342_001829"
     CDS             complement(5295..5945)
                     /locus_tag="U0342_001829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TalA family protein"
                     /protein_id="HEM2423173.1"
                     /translation="MFLDTGNLEEIKKALQFPFFEGVTTNPTILLKENKPRNTHIANI
                     PAKVVFVQAAGLTEEEIWEDVLRIQAIEPAEGTVIGLKIPAHEAGIKVIAKVRANFPN
                     EIILATAIFSSEQGYIAALSGADYLAPYYNRMEVSGLDAAKTIEELRYVLDLQGLEDV
                     KIMGASFKNSRQIMQALASGADTVTIGYDLFLQMMNKPLALESIEKFNEHQAALPK"
     gene            complement(6085..6813)
                     /locus_tag="U0342_001830"
     CDS             complement(6085..6813)
                     /locus_tag="U0342_001830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423174.1"
                     /translation="MKKINWTQWIALFVFASMGISVVFTIYEIFTAPIKQPATGPHVT
                     LRGDYIFLLFEIILGIFILLLPSIIARRFKFEIPGLVYILFIVFLYGSIYLGTVQKFY
                     STVPHWDKILHTFSGAMLGAIGFSFVSLLNANNKVVMKLKPGFIAVFAFCFAVTMGAF
                     WEVYEYTFDGIMNLNMQRYNLSNGTPLTGRAALEDTMTDIIVDIIGALFIVIVGYFAL
                     KKGRPWMERFEFKRKNWKKEPKKK"
     gene            complement(6908..8788)
                     /locus_tag="U0342_001831"
     CDS             complement(6908..8788)
                     /locus_tag="U0342_001831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heavy metal translocating P-type ATPase"
                     /protein_id="HEM2423175.1"
                     /translation="MKEWMKQNWQFITTGISGILIVIGCLVGSDVGDFWTAVIFLSAF
                     VIGGFEQAKEGIQATIKTKKLNVELLMILAATGASIIGYWFEGAILIFIFSVSGALET
                     YTTNKSKREITKLMAFQPERAFRLLPNGDLEEVAAKELQLDDMVFVRPGESVPIDGVI
                     VRGSTTLNEAAINGESVPATKTVGADVFGGTVNVSSAITVKVTQTFDNTIFSKIIRLV
                     ESAQSEPSKTARFIERFEDAYVKAVLLFVLVMMFLPHFALGWSWNETFYRAMVLLTVA
                     SPCALVASVTPATLAAISNGARHGILFKGGVHLENLRGVKAVAFDKTGTLTNGTPELT
                     DRLFAENVDKQQVINVVGAMERQSLHPLAAAITQDLEAEITEKLTEIEVTDVAGWGVQ
                     AIYQEGNWKVGKAGFVGEEAAAAFSNGAFERLAGEGKTIVYVAKDGVIQAMFALKDTC
                     RPEAIRTIKALQAKGIKTIMVTGDNEQTGAAIQAELGMDYVVSGCLPEKKVDVLKELS
                     VTYGSVAMVGDGINDAPALAHAAVGIAMGEGTDIAMETADVVLMKNDLEKIPYAYNLS
                     ERLHWITWQNICFAIAVILVLITANVFQLINLPFGVVGHEGSTILVILNGLRLLRSNR
                     KK"
     gene            complement(9054..9971)
                     /locus_tag="U0342_001832"
     CDS             complement(9054..9971)
                     /locus_tag="U0342_001832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464167.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase family oxidoreductase"
                     /protein_id="HEM2423176.1"
                     /translation="MKRITIGNSALTASEISLGCMRMADLSKEDANKVINTALENGID
                     FFDHADIYGGGKSEEVFADAIDMNATIREKMILQSKCGIRQGFFDFSKEHIIASVEGS
                     LKRLKTDYLDTLLLHRPDTLFEPEEVAAAFTELEKSGKVRHFGVSNQNPGQIELLKKY
                     VDQELIANQLQFSIMHTGMIDTGFNVNMTIDPSLDRDGGILEYSRLNNMTIQAWSPFQ
                     YGFFEGVFLDNDKFPELNKVIDKIAADKGVTNSAIAVAWIQRHPASFQTVVGTMNPGR
                     IADIAKASDVTLSREEWYEIYRAAGNQLP"
     gene            complement(10035..10568)
                     /locus_tag="U0342_001833"
     CDS             complement(10035..10568)
                     /locus_tag="U0342_001833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464166.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM2423177.1"
                     /translation="MERKLIQEINLLENKKLVMNLNIVAIAIVLILTVLGIVFSGGFA
                     ITNGFMGIIWMFGGYAVAIVIHEAVHGIFFKAFRPEAKVKFGFKNGMAYAGSPGAFYT
                     KAQFFIISIAPFIVLTGLFIFLRFLGVNEAVLYLIFALHTSGCVGDFYYCILLINQPA
                     GIVVEDTDKGINFYSEG"
BASE COUNT         3373 a         2407 c         1705 g         3275 t
ORIGIN      
        1 ttaacaaaaa ttgcttatga ttggttgtat catattcttc taacttcatc gattgcacat
       61 cttttagaat tggcagatct cgcaacgtga ttgttacaag atgttttcta gttaaaacaa
      121 tcccaatcgg aagtgtttca tacattgcgt agcctagttc atcctccgat tcgtatggat
      181 aatctacaat gactagtgaa tgtcttacat cttgctctgc tcgttttaat tctatcctag
      241 agcgctcctc agaatctaat gcatccaaaa tatacggttt gggcacatcc atttccttac
      301 tcaacatttc tatttcgtcg tctgttggag cagttacttt tacccaacaa ccatcttcca
      361 aagcagaaat ttgctccatt ttttcatttg ttgtcttaaa aaattcaatc atctagatat
      421 ctcccttctt cgtatcttct ttacaaaata tttcatttat gttacattat tattaataat
      481 aattcattta tgacaaagga gcgatgaaaa tggaatttat gtctatgata gttacaggaa
      541 ttgttttagc agcaataatc tcaggacttt cttttgtggt tggtaaactt agtggattat
      601 cttggttttg gattgcgttt tgtgcaaata gcggtttctt tattattttc atcactgtgc
      661 aaaattcatt tccagataac gcagccgtag ccctttcgta tttaaatctt ggaattggcg
      721 tagttttaat tgctttaacg cttttccaat ctagcaattg gcttttcaag aaaacaatgc
      781 aacgtaaaca ttaaaataat tagtctaatc taccattccc ttattatcgc atcaaaaaac
      841 tgtttaagct cgtttttcgc ttaaacagtt ctttttttat ttgaagtgaa tcttaattcc
      901 gttagaatct gtcacggaaa tagtattttc caatcgtttc acatcatatc cttgttctat
      961 taagttggtt attattgcat ctttatcagg agtaataatt gtaaaccaag cgagtcccgt
     1021 ttcattttct tgcagaagtt ccaagttgcg acctgcccag acgtttgaac cgatgtgatg
     1081 atgataatca ccagccgcaa aaaaccttgc tgacggaata gcggtcgtta agttcattcc
     1141 aagtacctct ttataaaatt gttccgcttt gtcagcatct gccacttgta aatgcacatg
     1201 accaattatc gttccgtttg gcatccctgt aaatggttca tcggtcgcaa tttgaagcaa
     1261 cgaatccaca tctacttgtt ctgtcaccat cggtaaattg ccatcgccat catgcatcca
     1321 ttctgctttt ggacggtctg cataaatttc aatgccattg ccttcaatat catgtaaata
     1381 aagcgcctcg ctataagcat gatctcccgc gccatcaatc ggataacctg atttagccaa
     1441 atgcagtaac acatccgcta aactttctcg cgttggcaaa agaaaggcgg tatgaaacaa
     1501 gccaatccgc ggcacttctg gaacaaccgc attatctatc tttttaagaa caagtaaagc
     1561 ttcatcagac ccactcacgc cgagccgaac cattcgctca ttttcctcta ataacttcaa
     1621 accaattact tcttgataaa aatctgccat ctcttttaaa tgtccaacat tcaatacaac
     1681 ttcgccaagt cgtaattctt cactaatttc tgccatgtaa aaaacgctcc ttttattgta
     1741 atacattcat tacaacataa ggagcgttca aattccaata aaacgactta caaaaagtaa
     1801 gttaattatt ttttaagtaa ctcactatgt tttctaccat aagcaaagta aacaattaaa
     1861 ccaataacaa accaaattcc gcaaagaatc cacgtatgaa cagacaaacg gctaattaaa
     1921 aacgcacata ataagaacga aacaattgga agaactgggt aaaatggtac tttaaatcct
     1981 ctcgcttgaa tatctttatt tttacgtaaa aagataatcc cgatagacac catcataaac
     2041 gccaagagtg ttccaatatt aaccaactca gccaatcgat ctaatggtac aagcccacta
     2101 ataatcgcga ctatcactgc aaaaatccag gtgtttttaa caggtgtttg atatttttga
     2161 ttaatttctg caagtacttt tggtaataaa ccatcacgtc ccatcgcaaa aatcagtcta
     2221 gtcgccccgt aactcattac taaaattact gtaatcatcc caacaaccgc gccaagtgat
     2281 acaatgccag ctacccaatc ttggttaatc acttgcaaag cataagccac tggatctgtt
     2341 acgtttaaat ctgtgtacgg taccattcca gttaaaacag cggatacagc aacatataac
     2401 accgtacaaa taagtagcga gcctataatc ccaatcggca ttgtccgttg cggatctttc
     2461 acttcttcag ctgcagacga aacggcatca aaacctaaat aagcaaagaa aactagcgcc
     2521 gcaccattca taacgccact aattccaaat ggcataaacg gttgccaatt atccggtttg
     2581 acataaaata caccaacaac taagaaaagt aaaataacac caactttaat aactaccata
     2641 atggtattca cgcgcgttga ttcttttatc ccaagcgtca ataaaaaggc aatcacaaga
     2701 acaataataa tcgccggtaa attaataaat gtacctactt ctggattaaa aggcccagag
     2761 attgcttctg ggatggaaat atgaaagcct gaaagtaacg catttaaata agaagaccat
     2821 ccactcgcaa cagaagccac tgcaagcccg tattctaaaa taagtgccca accaagcaac
     2881 catccaatta actcaccaaa aacaacataa ccatacgtat aggcgctccc tgcaaccgga
     2941 acacttgacg caaactctga gtaacacatt gctgcaatcg cacaaacaat cgccgcaatc
     3001 acaaaagaga aaataatcgc tggtcccgca tttttcgctg cgactgttcc tggtaaaata
     3061 aaaatccccg ttccaacaat cgctccgact ccaagtaaag ttaaatcaag tggtccgagc
     3121 gtttgcttta aatgcgtgct accactttta ttatgcatta aatcttctat cggttttctt
     3181 ctaaataatg aattcatttt gtctcctacc tttttacagt cttctaaaag gatatccttt
     3241 tacactttaa aggtcaatag gattgtgaga aaaaatacaa aaactaatca ttctttccta
     3301 aagtagaacc tattacccaa atatatcaga atcatctttc atgatttgca ctagacgcac
     3361 gattaagcta aaattagaag gaatggattt gtgcgtgttt agcacaaagc atgctagaaa
     3421 gaggaattca gttgatttta ttttattttt tattaattat tggtaagttc actttcgcct
     3481 atttccagat ttttaaagat cctaacttct tggcacttgg aatggacctg ctgtttatcg
     3541 tcttacttct tggactaatt catttatttg caccggttcg ctcgcacatt tattggtatg
     3601 cgggaatgtc tttatttatt gggattttaa tgctcgtgtg tgtactttac gcccggtttt
     3661 ataatgaagt tccaacatat cacagcttct ctcttatcgg cgaggttggc gtagttaaaa
     3721 acagtgctac aagcctgcta agcggaacag actggttgta catcctagat atcgttttac
     3781 tcccatttat cctttatttc catatcaaaa aaggacacga gttcccttca ttccgcataa
     3841 ctagccgtgt ttatggcgta tcatttatta gtacgctact cgttttaagt ggttttactt
     3901 attttatgat gcaacaaaac attatcagtg actccaagcg cgcaaaacga atgggaattt
     3961 tcacatttaa tatcagtacc gcgcttactg gtgcagatca tgttaaagcc gcagatatta
     4021 ctgcaaaaaa cgtgaatgac attaaaggtg tgtcggttaa gtcaaatccc gattacttcg
     4081 gtgctgctaa aggaaaaaat cttattatcg ttcaactcga gtcattccag cgtaatttaa
     4141 cgaacgtcaa aattaacggt cagtcgatta cgcctacatt agatagctta caaaacgaaa
     4201 ccatgtattc caaccaattt ttccaaactg tctctaagtc aaatacggct gatgcagaat
     4261 ggtccgttta tacatcgact ttcccaagtg gatattacac gaacacacaa acttacggcg
     4321 accgggtaat tccgtctatg cctcgtttac ttggcaaaaa tgattataaa acagcgacct
     4381 tccatacaaa tgatgctagt ttttacaatc gcgatgaatt ttatcctgct gtaggatttg
     4441 ataagtttta tgatcgtaaa ttctttggcg atgaggacgt tattggcttt tctcctagtg
     4501 atgaagtgct ttataacaaa gcctttccga ttctagaaga gcagtacaaa aacaaccaaa
     4561 aattctatgc gcaattaatt agtgtaagta gtcatatgcc atttgatatt ccaaaagata
     4621 agcaagaaat cgacttaccg agcgatttaa aagatacaga acttggtaac tatttcgaag
     4681 cggttcatta tgcggataaa caacttggtg aattcattca aaaattaaaa gatagcggca
     4741 tttgggatga ttctgttgtc gttttctacg gcgatcatca cattatcaaa accgaccaac
     4801 tacctgagga acaaaaaaaa tacgtcaatc gttctactga gttaaaagcg gatccagccg
     4861 atgattaccg tattccgttc ttcttacatt atcctggcat ggaaaaccct ggtgaaatta
     4921 aaaatgttgg tggcgaaatt gatattatgc caactgtcat gaatttactt ggtattaaaa
     4981 ctggtgacca aattatgttt ggaaccgata tcctcaattc atcaaataat tacgtacctg
     5041 aacgctacac aatgccagaa ggaagttatt tcaccaattc ttacatgtac caaccagatg
     5101 aaagtttcga aactggcgca gcaacgaatt atgatggaac aaacaaagaa ctttcgagtg
     5161 atgtaaagaa acgctttgac gctagccgaa aactcttaca gtattctgat agctatgtaa
     5221 acaatttacc attacgagac gaagataaat aaacaaaaga agtatccagc aaatctggat
     5281 acttcttttt tcgcttattt tggtaaagcg gcttgatgtt cattaaattt ttcaatactt
     5341 tcaagcgcta gaggtttgtt catcatttgt aaaaacaaat catagccaat tgtaacggta
     5401 tcagctccac tagctagtgc ttgcataatt tgacgactat ttttaaagct tgcacccata
     5461 attttcacat cttcaagtcc ttgtaaatct aacacgtatc gcagttcttc tattgttttc
     5521 gctgcgtcta gtccgcttac ttccatgcga ttataatatg gcgctaaata atctgcccca
     5581 gagagcgctg caatataacc ttgttccgat gagaaaattg ctgttgctaa aataatttca
     5641 tttggaaaat tagcgcgaac ttttgcgatg acttttatcc cggcttcgtg ggctgggatt
     5701 ttcaagccga ttaccgtacc ttctgccggc tcaattgctt gaattcgaag gacatcttcc
     5761 cagatttcct cttccgttaa cccagccgct tgcacaaaca caactttggc tggaatattc
     5821 gctatatgcg tgtttctcgg cttattctcc tttaataaaa tagtcggatt agtggttaca
     5881 ccttcaaaaa acggaaattg aagcgctttc tttatttcct ctaaattccc cgtatctaaa
     5941 aacatttcct cactccttca aagttttctt ctcattttaa gtgtagaaaa gttccacgag
     6001 ccagtcaatt gtttctgaga cccaatgttg ttggcgattt tgtacaacaa aaaacacctc
     6061 cacgtgccga ggtgtttttt accgctattt tttcttcggt tctttcttcc aatttttccg
     6121 cttgaattca aagcgttcca tccatggtcg gccttttttc agtgcaaaat agccgacgat
     6181 gacgataaat agtgcgccga taatatcgac aataatatct gtcatcgtat cttccagtgc
     6241 ggcgcggcca gtgagcggtg ttccattaga tagattataa cgttgcatat ttaagttcat
     6301 aattccatca aaagtatact catacacttc ccagaaagcc cccattgtca ccgcgaaaca
     6361 aaacgcgaat acagcgataa aacccggttt aagtttcatg acaactttgt tattagcatt
     6421 tagcaaacta acgaacgaaa agccaattgc tccaagcatc gccccactaa aagtatgtaa
     6481 aattttatcc caatgtggca cggttgaata gaatttttga actgtaccaa gataaatgga
     6541 tccgtataga aatacaataa acaaaatata cacaagacca ggtatttcaa atttgaagcg
     6601 tcgtgcaata atcgaaggta gcaacaaaat aaaaattcct aatataattt caaatagtaa
     6661 aaatatatag tcccctcgta acgtcacatg cggcccagtt gctggctgct tgatcggtgc
     6721 tgtaaaaatt tcgtaaatag taaaaacaac agaaatcccc attgacgcaa aaacaaataa
     6781 tgctatccat tgtgtccaat tgatcttttt catgcactca tctccaatct atcatgtaat
     6841 accctttttt cgcaaaaaga aactgctcat ccatcttaga ctaggaatag acaagcagtc
     6901 aaatttatca ctttttccga ttagatcgaa ggagcctaag cccatttaga ataactaaaa
     6961 tagtacttcc ctcgtgcccc acaacgccaa atggcaaatt gattagttgg aaaacattcg
     7021 ctgttatcaa aacaagaatc accgcaatcg caaaacaaat attttgccaa gtaatccagt
     7081 gaagccgttc agaaaggttg taagcatatg ggattttctc caaatcattt ttcattaaaa
     7141 caacatctgc tgtttccatc gcaatgtccg tcccctcgcc cattgcaatt ccaacagccg
     7201 catgtgcaag agccggagca tcattaattc catcaccaac cattgccaca ctgccataag
     7261 taaccgacaa ttcttttaac acatccactt ttttctcagg taaacaaccg gaaacaacat
     7321 agtccattcc gagttcggct tgaatcgctg cacctgtttg ttcgttatct cccgtcacca
     7381 ttatggtttt aatccctttt gcttgaagtg ccttaatcgt acgaatggct tcaggccggc
     7441 atgtatcttt aagggcaaac atagcctgaa tcacgccgtc tttagctaca taaacaatcg
     7501 ttttcccttc acccgcaagt cgctcaaatg caccatttga aaatgctgcc gctgcttctt
     7561 ccccaacaaa cccagctttc ccaactttcc aatttccctc ttgataaatc gcttgaactc
     7621 cccatccagc tacatccgtc acttcaattt ctgttaactt ttcggtgatt tctgcctcta
     7681 ggtcttgcgt tattgccgca gctaacggat gtaaagattg tcgctccatc gctccaacta
     7741 cattgattac ttgttgctta tcgacatttt cagcaaataa ccgatctgtc agttctggtg
     7801 taccatttgt cagcgtccca gttttatcaa atgcaacagc ttttacaccg cgcaaatttt
     7861 ccaagtgtac gccgccttta aacaaaatcc cgtgacgtgc accgttcgaa attgccgcta
     7921 aagtcgcagg cgttaccgaa gccactagcg cacaagggga agcaaccgtt agcaaaacca
     7981 tcgcacgata aaatgtttca ttccaagacc accctaaagc aaaatgaggc aagaacatca
     8041 ttactaacac aaataataga actgctttta catacgcatc ctcaaatcgt tcaataaagc
     8101 gagcggtttt cgaaggttca ctttgagccg attctactaa acgaataatc ttactaaaaa
     8161 tcgtattatc aaatgtttgc gttactttga ccgtgatggc gctgcttaca ttgaccgtcc
     8221 cgccaaacac atccgcacca actgttttcg tcgctggcac tgattcccca ttaatggctg
     8281 cttcatttaa cgtggttgac cctcgaacaa tgactccatc gattggaaca ctttctcctg
     8341 gccgaacgaa taccatatca tccagttgta actcctttgc agccacttcc tctaaatctc
     8401 cattaggaag caaacgaaag gcgcgttctg gttgaaatgc cattaatttc gtgatttcgc
     8461 gcttactttt attggtcgta tacgtttcta aagcgccact aaccgagaaa ataaaaataa
     8521 gtatggcccc ttcaaaccaa taaccaataa tagatgcacc ggtagccgct aaaatcatta
     8581 agagctccac attcaacttt ttcgttttga tagtcgcttg aatgccttct ttagcttgct
     8641 caaaaccacc gataacaaag gcacttagga aaataaccgc tgtccaaaag tcgccaacat
     8701 cactgccgac caaacaacct atcacaatca aaatcccgct aatacccgtc gtaataaatt
     8761 gccaattctg cttcatccat tccttcatta tgctcatcct ctccaaatga taatgattcc
     8821 cattacccta aaaaacacaa aaatctgctt tcgcaaccgc gaaaaacaga ttaaacaata
     8881 attattataa ataaatataa aaatatgcgt ccttaactca cttgttatta tagcactttc
     8941 ctaatgacat atcaaactaa ttgataaaat tgcattctaa ttgagaatga atttcactat
     9001 cactccaata cataaaaaaa cacttgagca taatgcccaa gtgtctgatc tcattaaggt
     9061 aattggttgc cagccgcacg gtaaatttca taccattctt cgcgactaag tgttacgtca
     9121 gaagcttttg caatatcagc aattcttccc ggattcattg taccaaccac tgtttggaag
     9181 ctcgctgggt ggcgctgaat ccacgcaacc gctatagctg agttagttac acctttgtca
     9241 gcagcaattt tgtcgattac tttgttcaat tcagggaatt tatcgttatc caagaaaact
     9301 ccttcaaaga aaccatattg gaacggggac catgcttgga ttgtcatgtt gtttaagcga
     9361 ctatattcca aaataccgcc gtcacgatca agtgaaggat caatcgtcat attcacatta
     9421 aaaccagtat caatcatacc cgtatgcata atgctaaatt gcagttggtt ggcgattaat
     9481 tcttggtcta catatttttt cagtagttca atttgacctg gattttgatt acttacgccg
     9541 aaatgacgca cttttccact tttctctaat tctgtgaaag ctgccgctac ttcttctggt
     9601 tcgaaaagtg tatccggacg gtgaagtaaa agtgtatcta aatagtctgt tttcaggcgt
     9661 tttaagctac cttccacaga agcaataatg tgctcttttg aaaaatcaaa gaatccttga
     9721 cgaattccgc attttgattg aagaatcatt ttttcacgaa tagttgcatt catatcaatt
     9781 gcatcagcaa aaacttcctc tgatttaccg ccgccataaa tatccgcgtg gtcaaaaaaa
     9841 tcaatgccat tttcaagtgc tgtattaatc actttattgg catcctcttt actaagatcc
     9901 gccattctca tacatcctag cgaaatttct gaagctgtta aagcgctatt accaattgtt
     9961 atacgtttca aactaagcac ctctttctaa aagtatatcc ttattctaac actttgttgt
    10021 aatcgttacc aagcttaacc ttctgaataa aaattaatgc ctttatccgt atcctccaca
    10081 acgattccag ccggttgatt aatcaagaga atgcagtagt aaaaatcccc aacacaacca
    10141 gacgtatgta acgcaaaaat taaataaaga accgcttcat tcaccccaag aaatcgcaga
    10201 aaaatgaaca aacccgtaag aacgataaat ggcgcaatcg aaataataaa gaattgtgct
    10261 ttcgtataaa atgctccggg gcttccagca taagccatcc catttttaaa accaaatttc
    10321 acttttgctt ctggacgaaa tgctttaaag aaaatcccgt gtacggcttc gtgaataaca
    10381 attgctactg cataaccacc aaacatccaa ataatcccca taaaaccatt cgtaattgca
    10441 aaaccacctg aaaaaacaat tcctaaaaca gttaatatga gtacaatagc aatcgcaaca
    10501 atattcaaat tcataaccaa ttttttattt tctagtaaat taatttcctg aatcaatttt
    10561 ctttccatcc agaccgctcc ttttataaaa acgctgatat tttcgttatt acaattatac
    10621 aatacttctt gtcagcattc tatgtcatag tggggaaata cccaagtccg gctgagggag
    10681 gtgaaaagtt tttcttttgt cggtttctat aaatttttac aagcctttga atcgttaaag
    10741 ctatatactc tcatgtcaca
//
LOCUS       DASEAA010000088        10733 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.088, whole genome shotgun sequence.
ACCESSION   DASEAA010000088 DASEAA010000000
VERSION     DASEAA010000088.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10733)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10733)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10733
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.088"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(83..607)
                     /locus_tag="U0342_001834"
     CDS             complement(83..607)
                     /locus_tag="U0342_001834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM2423178.1"
                     /translation="MAEKDGINTKDFLIGGLIGAIVGSAAALLFAPKSGKELREDLNT
                     QVDTIKEKGNQWKDVAYEKGIEISGVAKGTKDKLVDSAGGFVDVVKDKSGKLADTVSK
                     QSKAVKEVVSQNKEENQEAAKQAADAVKNEAKDAADDVEKAADKAKKEAKKAVDEGKD
                     EAKKIASDVKKEVK"
     gene            complement(629..1084)
                     /locus_tag="U0342_001835"
     CDS             complement(629..1084)
                     /locus_tag="U0342_001835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF948 domain-containing protein"
                     /protein_id="HEM2423179.1"
                     /translation="MIVILYIAALIAAIALLVIAIYLGKTLKSTSQTMDEVAKSLEKI
                     TVEVQGITGQSQKLLDKTNTLLEDVNGKVAKVDPVFDAVGDIGTSLLGLSQSVRELAT
                     LATNKVEQNEAKISQAVSISNSILSFREKMKANKAAKEAAKEAAEQSNF"
     gene            1340..2452
                     /locus_tag="U0342_001836"
     CDS             1340..2452
                     /locus_tag="U0342_001836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M29 family aminopeptidase T"
                     /protein_id="HEM2423180.1"
                     /translation="MRDARIEKLAHNLINYSVKLGAGEKVLIENFGVQKELVMALVEE
                     AYKAGGFPFVSLKEPQIDRAMMLGADSSQYAKIAEFEGNVMKEMDAYIGLRAGDNINE
                     TSDVPADKLKIHGETVGKMHSDIRVKQTKWVVLRYPSSSMAQLAKMSTAGFEDFYFDV
                     CNLDYGKMSDAMDGLVELMNKTDKVHLVGPGTDLTFSIKDIPAIKCAGEMNIPDGEVF
                     TAPVRDSINGTLTYNTPSPYQGFTFENVSFTFKDGKIIEATANDTARINKVLDTDEGA
                     RFVGEFAIGVNPFIHEPMQDILFDEKIEGSFHFTPGQCYDEAFNGNQSAIHWDLVNIQ
                     RADYGGGEIYFDEVLIRKDGIFVLPELEALNPENLV"
     gene            complement(2493..3038)
                     /locus_tag="U0342_001837"
     CDS             complement(2493..3038)
                     /locus_tag="U0342_001837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peroxiredoxin"
                     /protein_id="HEM2423181.1"
                     /translation="MAERLVGTQAPRFEMEAVMPNQTFGKVSLEKNIEDDKWTILFFY
                     PMDFTFVCPTEIVAISARSDEFDALNARIIGASTDTIHSHLAWTNTPIKEGGIGRLNY
                     PLAADTNHQVASDYGVLIEEEGVALRGLFIINPKGEIQYEVVHHNNIGREVDEVLRVL
                     QALQTGGLCPINWQPGEKTIV"
     gene            complement(3183..4526)
                     /locus_tag="U0342_001838"
     CDS             complement(3183..4526)
                     /locus_tag="U0342_001838"
                     /EC_number="6.3.2.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramate--L-alanine ligase"
                     /protein_id="HEM2423182.1"
                     /translation="MTIYHFVGIKGSGMSALAQILHDKGFQVQGSDVDKYFFTQKALE
                     EKQIPIMTFSADNIQEGLTIIAGNAFPDTHEEIERALELGLPVIRYHKFLGQLIDGYT
                     SIAITGSHGKTSTTGLLSHVVGAIRPTSYLIGDGTGSGTKGAEYFALEACEYQRHFLA
                     YKPTYAIMTNIDWDHPDYFKSVDDVFNAFETLGKQVKKAVFALGDDAELRKLTLDIPI
                     IYFGFGEENEFQAKNVIKETTGTKFDVYHRGEFLGSFEIPTYGDHNVLNALSVIALCD
                     YEGLPVEDVKKELKTFEGVKRRFSITEKANQVLVDDYAHHPSEIRATVNAARQKYPDK
                     KVVAVFQPHTFTRTRTFLQGFADSLNLADEVYLCDIFGSAREKTGNLTIADLAHKTKG
                     NHIIKEEHTEELLKYPEAVILFMGAGDVQKFQAAYEKVLDHEVLTEADLKKSAIN"
     gene            complement(4821..7172)
                     /locus_tag="U0342_001839"
     CDS             complement(4821..7172)
                     /locus_tag="U0342_001839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM2423183.1"
                     /translation="MGWFKDFFFGDMDEEIDTYEDTSSRKVEKKAKQRAPEVVPKSNV
                     TAIKTKERTIRNERPVAYKTVPKQKHMQPVKRQMKTQMVYQYPKGEFRFPLIPDKQKS
                     QPIQPKKQPITKRQAAETQPVKEETRKRPFTATDVPSPVYAFNKRPSKFEFAVTEAEE
                     LSTIQEDLTITPVDLLDSAEAETIAFDTELNRQIEEEIVSVPVTEEVITEQPEVKVTP
                     EPVEQQEPARVSLITEEPAQTKTTTRSKQVESNRQEQLLKSRIPFNVMMVKKDKQALR
                     KEEAQEINGQQPVEVEAEQTNTVREAQVATVSYPTNYEFPSFSLLHPPVSKREDDSWL
                     QMQQEMLDETLENFNVQASVVNRTQGPAVTRFEVQPEKGVKVSKITNLTDDIKLNLAA
                     KDIRIEAPIPGKSTVGIEIPNQTSRPVMLSELMNTEAFQSSTSPLTAALGLDISGTPI
                     ITDLQKMPHGLIAGATGSGKSVCINSLLVSLLYKATPDQLKLLLIDPKMVELAPYNRI
                     PHLVSPVITDAKAATVALKWAVEEMERRYQLFSHTGVRNMEKYNEYASHPDHIGEKLP
                     YILIVIDELADLMMVAPNDVEESISRIAQKARACGIHMIVATQRPSVDVITGLIKANI
                     PTRVSFSVSSQIDSRTILDASGAEKLLGKGDMLFLPSGASKPVRLQGTFVSDEEIDAV
                     VAHVRSQGEADYIFEEQELLVKETAKENTDELFEEACDFVLSQNAASTSLLQRHFRIG
                     YNRAARLMESLENHQIVSGINGSKPRDVIITKDQLAKLRNKES"
     gene            complement(7482..8099)
                     /locus_tag="U0342_001840"
     CDS             complement(7482..8099)
                     /locus_tag="U0342_001840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4479 domain-containing protein"
                     /protein_id="HEM2423184.1"
                     /translation="MIVNAFYNKEGVGDTLLIETGEVTFENREWERRGDVARIFDRET
                     KELAGYNIFNSSNYFNITANGKVDLTEELVAQMNQVIEKAGFEPEIVADLSPKFVVGY
                     VESKEKHPNADKLNVCKINVGDEVLQIVCGAPNIDAGQKVVVAKIGAVMPSGLIIKPS
                     NLRGEDSFGMVCAARELAIPDAPTEKGIMVLEESAVVGEAFPVNF"
     gene            complement(8105..8905)
                     /locus_tag="U0342_001841"
     CDS             complement(8105..8905)
                     /locus_tag="U0342_001841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1444 domain-containing protein"
                     /protein_id="HEM2423185.1"
                     /translation="MAKMTTLKMKEKLEKELQAPNRQFSYNRDNDTLTVAQNGKKVTL
                     TIPQIIANFENDGNAAVEKIVYYVEEGFRAAAGNVELENNKASIYPVVRATSFPDETK
                     AGEALLTDDHTAETKIFYAVDLGKSYRFIEESMLKKAQLTHKEIREVAFNNLANLEIP
                     LKKDSVNGNDFYFVRTNDGYDASRLLNEAFLREMREKLTGEMVLAVPHQDVLIIGDIQ
                     DNTGYDVLAHMTMDFFADGLVPITSLPFVYNNGKLEPIFIMAKNRLKE"
     gene            complement(8940..9251)
                     /locus_tag="U0342_001842"
     CDS             complement(8940..9251)
                     /locus_tag="U0342_001842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2423186.1"
                     /translation="MKKLESVEQFDAIKSEGKSVFMFSADWCGDCKFIEPVMPEIEAE
                     NEDFVFYHVDRDEFIDLCADLAIFGIPSFLAFEDGEEVGRFVSKDRKTKEEINDFLAA
                     I"
     gene            complement(9366..9584)
                     /locus_tag="U0342_001843"
     CDS             complement(9366..9584)
                     /locus_tag="U0342_001843"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423187.1"
                     /translation="MREIIKKPVIVVGLFLLVASLVFLLGYVTDLPYFRDSELGWIWT
                     TMIAGIVTLFFGYFHDFLEKKKARSKVR"
     gene            complement(9577..10650)
                     /locus_tag="U0342_001844"
     CDS             complement(9577..10650)
                     /locus_tag="U0342_001844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465136.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM2423188.1"
                     /translation="MEKETLAMFKELTELQGTSGDEHRIRAFMRKELEPVSDEIIQDG
                     LGGIFGVRHGAEGGPRVLVAAHMDEVGFMVTRITENGLIRFQTIGGWNPQVLQAQRVQ
                     IMAPNGPVIGVVASVPPHLLSEAERSKPTDPKNLLIDIGADDKADAEKIGIKPGQFIV
                     PVAEFTPLANPKKILAKAWDNRYGVGLAIELMKELKGESLPNTLFAGANVQEEVGLRG
                     AGVSANMIKPDLFFALDASPANDTTGNKSQFGQIGQGFLLRIFDRTMIMHRGMREFLL
                     DTAETNKIPYQYFVSPGGTDAGKVHTSLSGIPSAVIGVPARYIHSSNSILHVDDYAAA
                     KEMITTLIRSLDKTTYETIKNNA"
BASE COUNT         3024 a         2307 c         1792 g         3610 t
ORIGIN      
        1 tgttttaaat caaattacaa gcagataatg tattttttcc caataaaaaa acagccccgt
       61 aaggctgttt tttgaactaa gtttatttta cttctttttt tacgtcagaa gcaatttttt
      121 tcgcttcgtc tttgccttca tctactgctt tttttgcttc ttttttcgct ttgtcagctg
      181 ctttttctac atcgtccgca gcgtcttttg cttcattttt cacagcgtct gccgcttgtt
      241 tcgcagcttc ttggttttct tctttgtttt gtgaaacaac ttctttcacg gctttgcttt
      301 gtttagaaac agtatctgct aatttaccgg atttgtcttt cactacatct acaaatccac
      361 cagcagaatc aactaattta tcttttgttc ctttggctac accactgatt tcgatacctt
      421 tttcataagc aacatctttc cattggttgc ctttttcttt aattgtatca acttgtgtat
      481 ttaagtcctc gcgtagttct ttacctgatt taggtgcaaa tagaagtgct gcggctgaac
      541 caacgattgc accaattaaa ccaccgatta gaaaatcttt tgtattaata ccatcttttt
      601 ctgccatgtt aaatccctcc aaattatatt agaaattaga ttgttctgct gcttcttttg
      661 ctgcttcttt cgctgcttta tttgctttca tcttttctct aaaagaaaga attgaattgc
      721 taattgagac agcttgagaa atcttcgctt cgttttgctc tactttgttt gttgcgagtg
      781 ttgctagttc gcgaacagat tgacttaatc ctagtaaaga agtcccaatg tcaccaactg
      841 catcaaaaac tggatccact ttcgcaactt tgccatttac atcttctaga agtgtattgg
      901 tcttatcaag caatttttgt gattgtcctg taatcccttg tacttctact gttatttttt
      961 ctaacgattt agctacctca tccattgttt gggaagttga ttttaacgtt tttcccaagt
     1021 agatggcaat aactaaaagc gcaattgcgg caataagcgc tgcaatatac aagattacta
     1081 tcatctatcc acacctccat attccttttt ctataccctg agtattcccc tctaaaactt
     1141 tcttctctaa tgatctatgt acaaaataca aaaaagaaaa ggtattagct tcattttagc
     1201 aagtaactgc cgaaaaataa actaataaga aagaaaccgg ttaatttgtt gtagaaggtt
     1261 gcttttagcg taatttggag taaaatagat acaggctgct ttttgcctat ttttagttaa
     1321 aatttaggga ggttacaaga tgagagacgc aagaatcgaa aaattagcac ataatttgat
     1381 taactattcc gtcaaacttg gcgctggaga aaaagtatta attgaaaact tcggtgttca
     1441 aaaagaatta gtgatggctt tagtagaaga agcatacaaa gctggcggtt tcccgttcgt
     1501 ttccttaaaa gaaccacaaa ttgaccgcgc gatgatgctc ggagctgata gttcccaata
     1561 tgcaaaaatt gctgaattcg aaggcaacgt gatgaaagaa atggatgctt acataggttt
     1621 acgtgctggc gataacatca atgaaacatc cgatgtccca gcagataaat tgaaaatcca
     1681 cggagaaaca gttggcaaaa tgcattctga tattcgtgtg aaacaaacaa aatgggttgt
     1741 acttcgctat ccaagttcct ccatggcgca acttgccaaa atgagcactg ctggttttga
     1801 agatttctac tttgacgtgt gtaacttaga ttacggaaaa atgagtgacg caatggatgg
     1861 attagtagaa ctaatgaata aaacagataa agtacactta gttggaccag gaacagattt
     1921 aacatttagt attaaagata ttccggcaat taaatgtgct ggcgaaatga atatccccga
     1981 cggtgaagta tttactgcac cagttcgtga ttctatcaat ggaacactta cttataacac
     2041 accatctcct taccaaggct ttacgttcga aaatgtatct ttcacgttta aggatggaaa
     2101 aatcatcgaa gcgactgcga atgatacagc tcgtattaac aaagtcttag atacagatga
     2161 aggcgcgcgc ttcgttggcg aattcgctat tggggttaac ccattcattc acgaaccaat
     2221 gcaagatatt ctttttgatg aaaaaatcga aggaagtttc cactttacgc ctggtcaatg
     2281 ttacgacgaa gcttttaatg gcaaccaatc tgctattcac tgggatttag ttaacattca
     2341 acgtgccgat tacggcggcg gcgaaattta ctttgatgaa gttctcattc gtaaagatgg
     2401 tattttcgtc cttccagaat tagaagcact taatccagaa aacttagtat aaaaaaaaga
     2461 cgcttaggat taattcctaa gcgtttttta gtttaaacaa ttgttttttc accgggttgc
     2521 cagttgattg ggcacagtcc acctgtttga agagcttgta aaactcttaa aacttcatcc
     2581 acttcccgcc cgatattatt atggtgcacc acttcgtact ggatttcacc ttttggattg
     2641 ataatgaaaa gaccgcgcaa tgctacgcct tcttcctcaa ttaatacacc gtaatcacta
     2701 gctacttgat gattcgtatc cgcagcgagt gggtagttta atctaccaat accaccttct
     2761 ttaatcggtg tattcgtcca tgcaagatgc gagtgaattg tatctgtaga agcgccaatt
     2821 atgcgggcat ttaatgcatc aaattcatct gaccgagcgg aaatagcaac aatttctgtc
     2881 ggacaaacaa atgtaaagtc cattggatag aaaaagagaa tcgtccattt atcgtcttct
     2941 atattttttt ctagacttac tttcccaaaa gtctgatttg gcataacagc ttccatttca
     3001 aatcttggag cttgtgtgcc tactaaacgt tctgccactt ttatccctcc attaattatg
     3061 tagttgtatt ttgtatcaca tgatatattt taatacacct aagaaatact gtaaagcttt
     3121 atttatacta attacaaaca agaaaaaagc acgccaacga atcggcatgc tttatttagt
     3181 tattaattaa tcgcgctttt tttcaagtca gcttctgtca aaacttcatg atcaagtact
     3241 ttttcataag cggcttggaa tttttgaacg tcccctgctc ccatgaataa aataacagct
     3301 tctgggtatt tcaaaagttc ttctgtatgc tcttctttga taatgtggtt tccttttgtt
     3361 ttgtgcgcta aatcagcaat cgttaaattc cctgtttttt cacgcgcgga accaaagata
     3421 tcacaaagat acacttcatc cgctaaattc aagctgtccg caaaaccttg taagaatgtg
     3481 cgagttcgcg tgaatgtatg cggctgaaaa acagcaacta cttttttgtc aggatatttt
     3541 tgtctagcag catttactgt agcacggatt tctgatggat ggtgcgcgta atcatctact
     3601 aatacttgat tagctttttc tgtaatacta aatcttcttt tgacaccttc gaaagttttt
     3661 aattcctttt tcacgtcttc cactggtaga ccttcataat cacaaagtgc aataacactt
     3721 aaggcattta atacattatg gtctccgtaa gttggaattt caaacgaacc taagaactcg
     3781 ccgcgatgat acacgtcgaa ttttgttcca gttgtttctt tgattacatt tttagcttgg
     3841 aattcgtttt cctcgccaaa accaaagtaa ataatcggta tatctaaagt aagcttacgt
     3901 aattcagcat cgtcccctaa ggcaaataca gcttttttca cttgtttacc cagtgtttcg
     3961 aatgcgttaa atacatcatc cacgctcttg aaatagtctg gatgatccca atcaatattc
     4021 gtcataattg catacgtagg tttataagca aggaaatgac gttgatattc acacgcttca
     4081 agtgcaaaat attccgctcc ttttgtcccg cttccagtac catcaccgat taaataagaa
     4141 gttggacgaa tcgcaccaac aacatgcgaa agtaaaccag ttgtcgacgt tttaccatga
     4201 gaaccagtta tcgcaatact tgtatagcca tcaattaatt gacctaaaaa tttatgatat
     4261 cgaatcaccg gaagcccaag ctccagtgca cgctcaattt cttcatgtgt atctgggaat
     4321 gcattcccag caataattgt taggccttct tgaatattat cagccgaaaa agtcataatc
     4381 ggaatttgct tttcttctaa tgctttttgt gtaaagaaat atttatccac atcgctgcct
     4441 tgcacttgga aacctttatc atgcaggatt tgagcaagtg cactcatccc tgaccctttt
     4501 attccaacaa aatgatagat agtcattatt tgaaccccca ttaatttatc ttgaagaggg
     4561 tgcctaaaaa aaacatgtta actgttaagc accaagtctt aactttgaaa acagtataaa
     4621 gtctccgttt tctagacatc atcttacgtt ctaattgtgt tttatgtttg aattctagtt
     4681 gagtcaataa ttcaccagct tattatatca ctttccatgt aaatagaaaa atctttcagc
     4741 gaatataagc gaaattactc atgaaaatag ccattatttg taaaactaat taagtaatat
     4801 gttagtttag tactacaaaa ttaagattct ttgtttcgca acttagctaa ttggtccttt
     4861 gtaataataa catctcgcgg tttggaacca tttatcccag aaacaatttg atgattttca
     4921 agggattcca ttaatctcgc cgctcggtta taaccaattc taaaatgtct ttgcaacaag
     4981 gatgttgagg cagcattttg gcttaaaaca aagtcacacg cttcttcaaa taattcatcg
     5041 gtattttctt ttgccgtttc ttttacaagt aattcttgtt cttcaaagat ataatcggcc
     5101 tcgccttgac tccgaacatg agcaacaact gcatcaatct cttcatcact aacgaaggtt
     5161 ccttgtaaac gcactggctt acttgcacca cttggtaaga agagcatgtc cccttttccg
     5221 agtaattttt ctgctccgct tgcatctaaa atcgttctag agtcgatttg agaagataca
     5281 gagaacgaaa cacgtgtagg gatattcgcc ttaatgagac ctgtaataac gtctacagat
     5341 gggcgctgtg tcgctacaat catatgaatg ccacaagctc ttgctttttg tgcgatgcgg
     5401 ctaatggatt cttctacatc atttggcgca accatcatca aatcagctaa ttcatcaatc
     5461 acaattaaaa tataaggtaa tttctcccct atatgatctg ggtgactagc gtattcatta
     5521 tatttttcca tattcctaac gcctgtatgg ctaaataatt gatagcgacg ttccatttct
     5581 tctaccgccc attttaaagc gacagtagct gctttggcat ccgtaataac tggactcaca
     5641 agatgtggta tccggttgta cggagctaat tcgaccatct tagggtcaat caaaagtagt
     5701 ttcaattggt ctggcgttgc tttgtaaagt aaacttacta gcaatgaatt gatacaaaca
     5761 cttttccctg accctgtagc tccagcgatt aaaccgtggg gcattttttg taaatcagta
     5821 ataattggcg ttcccgagat atctagcccg agtgccgctg tgagcggtga tgtagatgac
     5881 tgaaaagctt ccgtattcat caattcagaa agcattacgg gacgacttgt ctgattcgga
     5941 atttctatcc ctactgtact cttaccaggt atcggcgcct caatccgtat atctttcgct
     6001 gctaaattta atttaatatc atccgttaaa ttagtgattt tgctaacttt aacgcctttt
     6061 tcaggttgca cttcaaatct agttactgct ggaccttgtg tacggttaac tacactagct
     6121 tgtacgttga aattttccaa ggtttcatct agcatctctt gctgcatttg tagccatgag
     6181 tcgtcttctc gtttggagac tggcggatgg agcaaactaa acgacggaaa ttcatagttc
     6241 gttgggtaag agactgtcgc tacttgcgct tctcgaacag tattcgtttg ttctgcttct
     6301 acctcaactg gttgttgccc atttatttcc tgtgcttctt cttttcgaag tgcttgtttg
     6361 tctttcttta ccatcatgac attaaatgga attctgcttt ttagcaattg ttcttgtcta
     6421 tttgattcta cttgtttgct tctagtagtt gttttcgttt gcgccggctc ttccgttata
     6481 agggaaacgc gtgctggttc ttgctgttct actggttctg gggttacttt cacttctggt
     6541 tgctccgtaa tgacttcttc cgtcactggc actgacacaa tctcttcttc tatttgacga
     6601 tttagctctg tgtcaaaagc aattgtttcc gcttctgctg aatctaataa atctactgga
     6661 gtaatagtta aatcttcttg tattgtacta agttcttctg cttctgttac agcaaactca
     6721 aatttacttg gtcgtttatt aaaggcataa acaggcgaag gtacatccgt cgctgtaaaa
     6781 ggtcgttttc ttgtttcctc ttttactggt tgcgtttctg ccgcttgtct ttttgttatt
     6841 ggttgttttt ttggttgaat tggttggctt ttttgtttat ctggaattaa cggaaaacga
     6901 aattcgcctt ttggatactg gtataccatt tgcgttttca tttgtcgttt cactggttgc
     6961 atatgttttt gttttggaac tgttttgtaa gcaactggtc gttcgttcct tatagtacgt
     7021 tctttcgttt taattgctgt tacatttgat tttggcacta cttctggtgc tcgttgtttt
     7081 gctttctttt ctacttttcg tgaagacgta tcttcgtatg tatctatttc ttcatccata
     7141 tcgccaaaga aaaaatcttt aaaccatccc attcattatc accctaaatt taattttctt
     7201 gtttgatttt aacagacaaa aacaaaataa tctatgacaa aattgtgaat tcgccttttt
     7261 tcgagccata ttcgttataa taccttggta atagagggtt caaacgtggt ataagttttt
     7321 gttataaagg taaaattgat tcatttttgt gcgatttatg catattttgt atacaattaa
     7381 cattttatcg ttctacattt aaggcgtttt cacaatatct aataaatagc aactaaaaaa
     7441 gcgcccgata tagcatcaga cgctcaaaat taaacattta tttagaaatt aacaggaaaa
     7501 gcttctccaa ccacagccga ttcctccaga accataatcc ccttttccgt aggcgcatca
     7561 ggaatcgcaa gttcacgcgc agcacatacc atgccgaaag aatcttctcc tcgcaaatta
     7621 gatggtttga taattaaacc acttggcata accgcaccga tttttgcaac aactactttt
     7681 tgaccagcgt caatgttcgg ggcaccgcat acaatttgca atacttcatc ccctacattg
     7741 attttacata catttaattt atctgcatta ggatgttttt ctttcgattc cacataaccg
     7801 acgacgaatt taggagataa atcagccacg atttccggtt cgaatccagc tttttcaatt
     7861 acttgattca tttgcgctac taattcctcc gtcaaatcca ccttaccatt tgcagtaata
     7921 ttaaaatagt tggagctatt aaagatgtta tatcccgcca actcttttgt ttcacgatca
     7981 aaaattcgcg ctacatcacc gcggcgttcc cattcacgat tttcaaacgt tacttcgcct
     8041 gtttcaatta gtagagtgtc ccctacccct tctttgttat aaaatgcgtt tactatcacg
     8101 ttttctactc ctttaatctg ttttttgcca ttataaatat cggttcaagt ttaccattat
     8161 tatagacaaa tggcaaagag gtaattggta caagcccatc cgcaaaaaag tccatcgtca
     8221 tatgagccag aacatcgtaa cctgtattat cttggatatc cccgataatt aaaacgtctt
     8281 gatgcggtac ggcaagcacc atttcccccg ttaacttctc gcgcatttcg cgaaggaacg
     8341 cttcattcaa caatctacta gcatcgtaac catcatttgt gcgaacgaaa taaaagtcat
     8401 taccattaac agaatctttt tttagcggga tttctagatt cgctaaatta ttaaaagcaa
     8461 cttctcttat ttctttatgc gttagttgtg cttttttaag catactctct tcaataaaac
     8521 gataggattt ccccaaatca accgcgtaga aaattttcgt ttcagccgta tgatcatccg
     8581 ttaacagcgc ttctccagct tttgtttcat caggaaaaga agttgcacgt acaaccggat
     8641 agatgctcgc cttattattt tccagctcaa catttcccgc cgctgcccga aaaccctctt
     8701 ccacataata aacaattttt tccaccgctg cattaccatc attttcaaag ttcgcaatga
     8761 tttgcgggat ggtcagagtt acttttttac cattttgcgc aaccgttagc gtgtcattgt
     8821 ctcgattata tgaaaactgc cgattcggcg cttgtaattc tttttcaagt ttttctttca
     8881 tttttaatgt agtcattttt gccataagtg cctccccttc cataaaaagc agtcactttt
     8941 tatatcgcag ctagaaaatc attaatttct tcttttgttt ttctatcttt acttacaaaa
     9001 cgccccactt cttcaccgtc ttcaaacgcc aaaaagctcg gaataccaaa aatcgctaaa
     9061 tcagcacata aatcaataaa ttcatctcga tcaacatggt aaaagacaaa gtcctcattt
     9121 tccgcttcga tttcaggcat tactggttcg atgaatttgc agtcgccaca ccaatcagca
     9181 ctaaacataa aaacggattt gccttccgat ttaatagcgt caaattgttc tactgattct
     9241 aatttcttca tttccatacg ctccttctaa tctcatacta gttaaatcct accgcctaac
     9301 aaaactttcg tccagaataa cgctcatgaa aaaagtccaa ccccaacgaa ggagccaaac
     9361 tttttttacc gtactttaga gcgcgctttt ttcttttcta aaaaatcgtg gaaatacccg
     9421 aaaaataatg tcacgatccc agcaatcata gtggtccata tccaaccaag ctctgaatca
     9481 cgaaaataag gcaggtccgt aacatagcct agcaagaata ctaaactcgc caccaaaagg
     9541 aacaacccca caacaattac tggtttcttt attatttcac gcattgtttt taattgtttc
     9601 gtaggtcgtt ttatccaaac tgcgaataag cgttgtaatc atttcttttg cagcagcata
     9661 gtcatccaca tgtaaaatcg agttagacga gtgaatgtat ctagctggaa caccaattac
     9721 tgcactcgga atcccgctaa gcgatgtatg cactttccca gcatccgttc ctcctggcga
     9781 aacaaaatat tgataaggaa ttttatttgt ttccgcagta tctaataaaa attcacgcat
     9841 acctcgatgc ataatcatcg tccggtcaaa aatacgcagt aagaaacctt gaccaatttg
     9901 accgaattgc gatttattcc cagtcgtatc atttgcaggg ctagcatcta acgcgaagaa
     9961 taaatctggt ttaatcatgt tcgcacttac gcccgcaccg cgcagaccga cttcttcttg
    10021 cacattcgcc ccagcaaaaa gtgtatttgg caacgattcg cctttcaatt ctttcataag
    10081 ttcaatcgca agaccaacgc cataacgatt atcccatgct ttcgctaaaa ttttctttgg
    10141 attcgcaagc ggcgtgaatt cagccacagg aacaatgaat tgccctggtt tgataccaat
    10201 tttctccgcg tccgctttat catccgcacc aatatcaatt agtaagtttt taggatccgt
    10261 tggtttgcta cgttcagcct ccgacaacaa atgcggtgga acagaagcaa ctaccccaat
    10321 aaccggaccg ttaggcgcca taatttgcac tcgctgtgcc tgtaaaactt gcggattcca
    10381 accaccaatt gtttgaaaac gtattagacc attttctgta attcgcgtta ccataaagcc
    10441 aacttcatcc atatgagccg caacaaggac gcgtggacca ccttccgctc cgtggcgcac
    10501 accaaaaata ccacctaagc cgtcttggat aatttcatcg gaaaccggtt caagttcttt
    10561 tcgcataaaa gcacgaattc tatgttcatc acccgaagtc ccttgaagtt ccgttaattc
    10621 tttaaacatc gctaacgttt ctttttccat taataatcat ctctttccgt ctaaaatctc
    10681 ttttattata gcaaataata tccgtttccg ctcgcttcac ttctctcttt tac
//
LOCUS       DASEAA010000089        10609 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.089, whole genome shotgun sequence.
ACCESSION   DASEAA010000089 DASEAA010000000
VERSION     DASEAA010000089.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10609)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10609)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10609
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.089"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(294..545)
                     /locus_tag="U0342_001845"
     CDS             complement(294..545)
                     /locus_tag="U0342_001845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423189.1"
                     /translation="MNRYKILGEYKDWCEIYKDGTVIHNGSSLGIVSQVESELCLRLN
                     YGTNKHFYSILKKCGDFILAVPKKVGFLKAEYKYEPIIF"
     gene            complement(637..1083)
                     /locus_tag="U0342_001846"
     CDS             complement(637..1083)
                     /locus_tag="U0342_001846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423190.1"
                     /translation="MKKLDFNCNDANYNAEFLMKILTTLKDITKVKQFTIEMIDAVPN
                     DQEQFKEEKGLFSEEVFDFNNLVKESHGINVDFKEIINILKQCRTVWELSILVVTSEN
                     ELNDSGKVLCEVELIEGDLFTILYSEDFPIDLFLEEFSADEITIEG"
     gene            complement(1302..1721)
                     /locus_tag="U0342_001847"
     CDS             complement(1302..1721)
                     /locus_tag="U0342_001847"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="effector binding domain-containing protein"
                     /protein_id="HEM2423191.1"
                     /translation="MAFEIVELKKETFTGNKVEIPEFDPQKGFGPMSEIKESAYTKFA
                     KNEKDYVGINASLDDLQYYIVASANSENGDTTFDIPAGKYAKFVTSETDRPALDGFIG
                     AAYGEVSQSDTVGIAGSFNLEDLREAEFTLYIPVVSK"
     gene            1824..2744
                     /locus_tag="U0342_001848"
     CDS             1824..2744
                     /locus_tag="U0342_001848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEM2423192.1"
                     /translation="MKIERLIGIIMLLLQRELVSASEMATMFEVSKRTIFRDIDTLAM
                     ANIPIYTIAGTKGGIGIMPTYKVDKKLLTADDLTAIIASLDGMEQLLSSAETKKTLQK
                     MKNMLDHSSEPPKSSISLDFSNLSMKNELNAKVESLYLAIKKHQLVELSYIDRTGNQT
                     IRKTEPYHLLFRNRSWYLQGYSLERSDFRTFKMSRIVELKTLEETFEARPFSVKPFGA
                     PPDRPMFLMHEVSLIVDKIAREQIIERFDLVEISQQDDAHFLAKVTLPDHEAGYRFLL
                     QLGTHVTIQNRDDFYDNFVDYLKEIQGKYI"
     gene            complement(2783..2977)
                     /locus_tag="U0342_001849"
     CDS             complement(2783..2977)
                     /locus_tag="U0342_001849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423193.1"
                     /translation="MKYVKSQMKELVKDSVDLQERLQKLMKEMDLEKTFALKALYHSE
                     VADGGPYQTAYQDLDYKYKD"
     gene            complement(3064..3366)
                     /locus_tag="U0342_001850"
     CDS             complement(3064..3366)
                     /locus_tag="U0342_001850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2423194.1"
                     /translation="MKNILLVCNAGMSTSFLVEKMKAAGAEQGVEANIWAVSDAELHE
                     NWEKADVILLGPQVGYLKGNTEKVVGGKIPVEVINMLDYGRVNGAAVLERAIELIG"
     gene            complement(3384..4718)
                     /locus_tag="U0342_001851"
     CDS             complement(3384..4718)
                     /locus_tag="U0342_001851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2423195.1"
                     /translation="MAETKKKSIVNGFINVAQRLGGQIHLRSLRDAFASIMPFMILAG
                     FVTLINYVILEPTGFMGKIVNPDTLKTWQEIGISIGNGTLSVITLLVTVAISYHLCLN
                     RGYKNVIAPILVALSSFIVVTPIAMTFLPEGASKSIEVPNVIPVSYTGASGMFVGIIV
                     GLIATDLFIKLSKNKRMQINLTGNIPPAVIKSFNVLIPIMITVIIFSVMSFAVNQVFN
                     MDFNTLVTTIITKPLSYVTTSLPGFLLITSIANLFFGLGIHQAVISGPLLDPFLLQNM
                     QENMVAYANHQEIPHIINMAFKDTFAVMGGSGNTIGLLIAIFIFGKRKDYKDISKLSA
                     APSLFNISEPIIFGLPIVFNPLLIIPFVLAPIFSLTTAYYATAAGWINHVVVQTPWTT
                     PPIISGFLATGGDWRASVLQVIIIVVTVFIYLPFLRMDEKVAFATAQKTEAK"
     gene            complement(4711..6153)
                     /locus_tag="U0342_001852"
     CDS             complement(4711..6153)
                     /locus_tag="U0342_001852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2423196.1"
                     /translation="MKELLTFPKDFWWGSAWSAEQAEGRGDTGKAKTVWEHWFETEPN
                     RFYEGVGSEITTDHFNRYKEDVQWMKKTGQNSFRISISWARMFPNDGVGEVNPKAIAF
                     YRDLLTEMNENGIKPFANLYHFDMPVALQDAGGWESREVVDAYVHFADTCFKEFGDLV
                     YHWFTFNEPLGPILGGYLEDFHYPNQIDFKRGAQAGFNTILAHALAIKAFKKLNLSSK
                     IGVILNLSPTYPRSQNEYDLEAAEICDAFYTRSFLDPMVKGTFPEKLVEIMREYDQMP
                     EYTEEDLTIIKENTAQILGLNYYEPRRVKARLTAINEKSPFLPDWFFEPHNMPGKRMN
                     IYRGWEIYERGIYDLCIDIRDNYGNIESFISENGMGVANEERFLNEEGQIQDDYRIQF
                     VKDHLAYVHQAIAEGCDIKGYHLWTFIDCWSWINAYKNRYGLVSLDVETGKRTMKKSG
                     EFYKKMSDMNGFEYDTSKLVGTKREETTNG"
     gene            6310..7023
                     /locus_tag="U0342_001853"
     CDS             6310..7023
                     /locus_tag="U0342_001853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2423197.1"
                     /translation="MSGMAKYMEIYIDIRDKINQNKYEINEKLPDGDSMARTYDCSKL
                     TVKKALDMLVQEGMIIRRRGAGTFVKSHSTNGGEFALGPMSGLVNTFGKDNIKSKVIL
                     FSIEKPSKEVAEKLEMQDDYIYRIIRMREVGHKAYSIEHTYMPLAIIPGLEPRHLEDS
                     IYNYIRDDLKLKMQSAHVWVRGDKSNQEDSKLLDLEEPTFMMEIEKLAHLEDGRVFEY
                     SITRHTYESFVFETVFVQN"
     gene            complement(7062..7397)
                     /locus_tag="U0342_001854"
     CDS             complement(7062..7397)
                     /locus_tag="U0342_001854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alkylphosphonate utilization protein"
                     /protein_id="HEM2423198.1"
                     /translation="MPKLPNCPECNSEYAYEDRGLLICPECGHEWSAVAEEATEEKVF
                     KDANGNVLTDGDSVTVIKDLKVKGASNPIKMGTKVKNIRLVDGDHDIDCKIDGFGPMK
                     LKSEFVKKI"
     gene            complement(7434..8153)
                     /locus_tag="U0342_001855"
     CDS             complement(7434..8153)
                     /locus_tag="U0342_001855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YebC/PmpR family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2423199.1"
                     /translation="MGRKWANIKEKKASKDKTNSRIYAKFGIEIYVAAKSGDPDPHAN
                     QKLRFVIERAKTYNVPKHIIDRAIEKAKGTGDETYSELRYEGFGPNGSMIIVDALTNN
                     VNRTASDVRAAYSKNGGNMGVSGSVAYMFDNTAIFGVEGKDADELLELLMEADIDVRD
                     ILDEDGQAIIYAEPEDFHKVQEGLKAAGIEEFTVAEIEMIPQNDIQLSGEDLEKFEKL
                     IDALEDLEDVQKVYHNVELED"
     gene            complement(8249..8758)
                     /locus_tag="U0342_001856"
     CDS             complement(8249..8758)
                     /locus_tag="U0342_001856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX domain-containing protein"
                     /protein_id="HEM2423200.1"
                     /translation="MEEWDLLNENRELTGKTHIRGEKLAPGELHLVVHVCIFNEKGQL
                     LIQKRQKDKEGWPNYWDLSAAGSALKGETSRQAAEREVQEELGITIDLSNTRAKFSYH
                     FEAGFDDYWFITKDVELSDLTLQKEEVADARFVTKEELEVLRSSGEFIPYFFLNQLFN
                     LKNATSIHF"
     gene            complement(8808..9755)
                     /locus_tag="U0342_001857"
     CDS             complement(8808..9755)
                     /locus_tag="U0342_001857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003741444.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEM2423201.1"
                     /translation="MRKAERLNDMMLFLNDKNSFQLSDIMAKYGVSRSTAIRDIQSLE
                     EIGMPIYSERGRNGHYRVLRNRLLSPIVFNIDEVFALYFSMLTLKAYETTPFHLSVEK
                     LKTKFERCLSAEKIEMLRKTEEVFSLGYIKHNNQCEFLDIILQFTMEEKVCQINYDKN
                     GTEKTYIVQFYNISSAYGQWYVTSYNFETKRMQVFRCDKILALKENDTFEAKKMEELK
                     RVADSFNKKADVTTFEVEIASNGVDLFFKENYPSMKLRQQQGKNVIHGFYHKGEEQFI
                     INYLLGYGEKIIAIQPDSLRDMLLNELDTIKKHMQNLSS"
     gene            9850..10467
                     /locus_tag="U0342_001858"
     CDS             9850..10467
                     /locus_tag="U0342_001858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Type 1 glutamine amidotransferase-like
                     domain-containing protein"
                     /protein_id="HEM2423202.1"
                     /translation="MKNLFLTSSFKDVVPLFTEFESNLQGKTVTFIPTASTVEEVVFY
                     VEAGKKALEDLGLIVEELDVAAENLEEITMTLKKNDFIYVTGGNTFFLLQELKRTGAD
                     KLILKEIAKGKLYIGESAGAVITSPNISYIQSMDSVKKATNLTNYDALNLVDFYTLPH
                     YNNTPFKKITQQIIADYADDLKIFPISNCETIFVQGNVVTSKGIL"
BASE COUNT         3225 a         2132 c         1738 g         3514 t
ORIGIN      
        1 tctccatcca tataaatcgt aataacttca taattactgt ctattggatg tactgataaa
       61 tcaggtttat taataacgtt ttttagacaa gatatatcat actcatcgtc agaaaagaat
      121 aaaatattat tactaatatt ttcctgcatt tccatttcat tgatataggt tttatgctgc
      181 ggatttgata cgaaccacat atttaaaaga tcttccttat ttatctgcgg tatactagaa
      241 atcagttttt catctacata aatatagtca ataaattcat caaattcttg tatttaaaaa
      301 ataataggtt catatttgta ttcagctttt aaaaacccca ctttcttagg gacggctaaa
      361 ataaaatcac cacatttttt caatatcgaa tagaaatgtt tatttgttcc gtaatttaac
      421 cttaaacaaa gttcagactc tacttggctt acaatcccta aagatgaacc attatgaatg
      481 acggttccat ctttataaat ctcgcaccag tctttatatt cacctaagat tttatatcta
      541 ttcatattat ttctccgttt atactttata attcattcaa cattttcttt gttttatccc
      601 ctaatacaac attttttctt taacttcctc tcctatttag ccctctatag taatttcatc
      661 agcactaaat tcttctaaaa acaaatcaat aggaaagtct tcactataaa gaattgtgaa
      721 taaatctccc tctataagct ccacttcaca caagactttt ccgctatcat tcaattcatt
      781 ctcagatgta acaaccaata tactaagttc ccaaacagtt cgacattgtt ttaatatatt
      841 tattatttct ttaaaatcta cattgatacc gtgtgattct ttcactaaat tattaaaatc
      901 aaaaacttct tcgctaaata gccctttttc ttccttgaat tgctcttgat catttggaac
      961 tgcatctatc atttcaatag taaactgctt aactttggta atatctttta aagtggttaa
     1021 tattttcatt aaaaattctg cattataatt agcatcattg cagttaaaat ctagtttttt
     1081 caatctatcg tcactcctat ttttaaggtg aagatcatca ttcagtaatt tgtagttttc
     1141 cactcttcta ttatagcatc gcaactacat cccttttgtg agcgttttgt gaacctctgt
     1201 gcaataacat actcaaatgc agaacttatt agtgcatttt tgattttttt aattattaac
     1261 ataaaaaaag acccctttca tccgaaagag atctcctcaa tttacttact aacaaccgga
     1321 atataaagcg taaactcagc ttctctaaga tcctccaaat taaacgatcc cgcaatgcca
     1381 accgtatcgc tttgactaac ctcgccgtat gctgcgccga tgaagccgtc tagagctggg
     1441 cggtctgttt cgcttgttac gaattttgcg tatttgcctg ctggaatgtc gaaagttgtg
     1501 tcgccgtttt cactgtttgc actagctacg atgtaatatt gtaggtcgtc aagacttgcg
     1561 ttaatgccaa cgtagtcttt ttcgtttttt gcaaattttg tgtaggctga ttctttaatt
     1621 tcgctcattg ggccaaagcc tttttgtgga tcaaattcag ggatttctac tttatttcca
     1681 gtaaatgttt ctttttttaa ttcaacaatt tcaaatgcca taatatttcc ctccaaaaag
     1741 ttacttaact ttgatatgat gtaactataa cacacgaatg atgacaactg tctgtcatca
     1801 ttccaaaaac aaaggagaaa aaaatgaaaa tcgagcgact catcggaatt atcatgctgc
     1861 ttctccaacg cgagctagtc agtgcttctg aaatggctac aatgttcgag gtttccaaac
     1921 gtactatttt ccgcgacatt gacacactcg cgatggcgaa tatcccgatt tacacaattg
     1981 ccggaacaaa gggtggcatt ggtattatgc ctacctacaa agtcgataaa aagcttctca
     2041 cagcggatga tttaaccgcg attattgcta gtttggacgg aatggaacag ttgctttctt
     2101 ccgccgaaac caagaaaacc ctccaaaaaa tgaaaaacat gctcgaccat tcaagcgaac
     2161 cgcctaaaag ttccatttcg ctcgatttct ccaatttgtc catgaaaaac gaattaaacg
     2221 ctaaagtcga aagtttatat ttagcgatta aaaaacatca actcgtagaa ctcagctata
     2281 ttgatcgaac gggcaaccaa accattcgta aaactgagcc ttatcacctc ctgtttagga
     2341 atcgttcttg gtatttgcaa ggttacagtt tggaacgcag cgattttcga acatttaaaa
     2401 tgtcgcggat tgttgaacta aaaacgctag aagaaacttt tgaagctcgc ccttttagtg
     2461 taaaaccgtt tggcgcccca cccgacagac cgatgttttt gatgcatgaa gtcagcttaa
     2521 ttgtcgataa aattgcccgc gagcaaatca tcgagcgctt tgatctagtc gaaatctcgc
     2581 agcaagatga cgcacacttt ttggcaaaag tgacgcttcc tgatcacgag gctgggtacc
     2641 gctttttgct ccaacttgga acgcatgtaa ccattcaaaa ccgtgatgac ttttacgata
     2701 attttgttga ctacttaaag gaaatccaag gaaaatatat ctaaaaatgg ctctgctaat
     2761 tgtttagcag agccatttga tgttaatctt tatatttata atccaaatct tgataagctg
     2821 tttggtacgg tccaccatca gctacttctg aatgataaag tgcttttaaa gcgaaagttt
     2881 tttctaagtc catttctttc attagctttt gaaggcgttc ttgcaagtct acgctatctt
     2941 ttacaagctc tttcatttgt gattttacat atttcataat aattccgctc cttttcacac
     3001 attataacac tttcttcccc gataaaaaag gagtgcgact ataagccaca ctcccttact
     3061 tttttaaccg attaattcga ttgctctttc aagtaccgcc gctccattga cacggccgta
     3121 gtctagcata ttaattactt cgacaggaat ttttccgcca actacttttt ctgtgttccc
     3181 ttttaaataa ccaacttgtg gtccaagcaa aatgacatct gctttttccc agttttcgtg
     3241 tagttcagcg tcggatacag cccagatatt tgcttcaacg ccttgttccg cgcctgctgc
     3301 tttcattttt tctactaaga aacttgtgga cataccagca ttacatacta ataaaatgtt
     3361 tttcattggt taaacttcct tccttatttt gcttctgttt tttgagctgt agcaaaagca
     3421 actttttcat ccatacgtag gaacggcaga tagataaaga ctgtcacaac aatgataatt
     3481 acttgtaaaa cggacgcgcg ccagtccccg ccagttgcta ggaaaccaga aataattggc
     3541 ggtgtcgtcc acggggtttg tacaactaca tgattaatcc aacctgctgc tgtcgcataa
     3601 tacgctgttg ttaaagagaa aatcggcgct aatacgaacg ggataataag taacgggttg
     3661 aacacaatcg gcagaccaaa gatgattggc tcactgatgt taaatagtga tggtgccgca
     3721 gatagtttcg agatatcttt gtaatctttt cgtttcccaa agatgaaaat ggcaattaat
     3781 aagccaatcg tgtttcctga gccacccata accgcaaatg tgtctttgaa agccatatta
     3841 ataatatgcg gaatttcttg atgattcgcg taggcaacca tgttttcttg catattttga
     3901 agtaaaaatg gatctagtaa cggaccagaa ataactgctt ggtgaatacc caaaccgaag
     3961 aataagttag cgatagaagt aatcagcaag aagcctggaa gacttgtcgt cacatagcta
     4021 agtggcttcg tgataatcgt tgtcacaagt gtattaaagt ccatgttgaa aacttgatta
     4081 acggcaaatg acataactga gaaaataata accgtaatca taatcggaat taacacgtta
     4141 aatgatttaa taactgccgg tggaatattt cctgttaaat tgatttgcat acgtttgttt
     4201 ttcgataatt taatgaataa atcggttgca attaaaccaa cgataatacc gacgaacatg
     4261 cctgacgcgc cagtataact aactgggata acgttcggta cttcgattga ttttgatgcg
     4321 ccttctggaa ggaacgtcat cgcaatcggt gttacaacaa taaaagaaga taaagcgaca
     4381 agaattggag caataacgtt tttatagccg cggttcaaac ataaatgata cgaaatcgcc
     4441 acagtgacta aaagcgtaat aacactcagc gtaccatttc cgattgaaat accaatctct
     4501 tgccatgttt taagtgtatc tgggttaaca attttgccca taaagccagt cggttctaaa
     4561 ataacatagt taatcagcgt gacaaaacca gctaaaatca tgaacggcat aatactcgca
     4621 aaagcatcac gcaatgaacg caaatgaatc tgaccaccaa gacgttgtgc tacattaata
     4681 aatccattaa caatcgactt ctttttcgtt tcagccatta gttgtttcct cccttttcgt
     4741 cccaactagt ttgcttgtat catattcaaa accgttcatg tcactcattt ttttataaaa
     4801 ttcgccactt ttcttcattg tgcgtttgcc agtttcgaca tcaagtgaaa cgagtccgta
     4861 acggttttta tatgcgttaa tccacgacca acaatcaatg aatgtccaca gatgataccc
     4921 tttaatatcg caaccttctg caatcgcttg atgtacataa gccaaatgat ctttgacaaa
     4981 ttgaatccgg taatcatctt gaatttgtcc ttcttcattt aagaaacgct cttcatttgc
     5041 cacacccata ccattttcag aaataaatga ttcgatattg ccgtaattat cacgaatatc
     5101 aatacataaa tcgtaaatcc cacgttcata aatttcccaa ccgcggtaaa tattcattcg
     5161 tttacctggc atattatgcg gttcaaaaaa ccaatctggt aaaaacggac ttttttcatt
     5221 aattgctgtt aaacgggctt tgacgcgtct tggttcatag taatttaggc caagaatttg
     5281 cgccgtattt tctttaataa tcgtcaaatc ttcttccgtg tattccggca tttgatcgta
     5341 ttcgcgcata atttcaacta atttttctgg gaaagttcct ttaaccatcg gatccaagaa
     5401 gcttctcgtg taaaaagcat cacaaatttc cgcagcttct aaatcgtatt cgttttggct
     5461 acgtggatac gtcgggctaa ggtttaaaat aacgccgatt tttgatgaca agtttaattt
     5521 tttaaatgct ttaatagcta acgcatgcgc caaaatcgta ttaaaaccag cttgtgcacc
     5581 gcgtttgaag tcgatttgat tcggataatg gaaatcttct aaatagccgc caagaatcgg
     5641 tcctagtggt tcgttaaacg taaaccagtg ataaactaaa tcgccgaatt ctttaaaaca
     5701 agtatccgca aaatgaacat aggcatctac aacttctctt gattcccagc caccagcatc
     5761 ttgaagtgca acgggcatat cgaaatgata taagttggcg aatggtttga taccgttttc
     5821 attcatttca gtaagtaaat cgcgataaaa cgcaatagct ttcgggttca cttcgccaac
     5881 accatcatta ggaaacattc gcgcccatga aatcgaaatc cggaacgaat tttgtcctgt
     5941 tttcttcatc cactgtacgt cttctttata acgattaaaa tgatctgttg taatttctga
     6001 acctacgcct tcgtaaaagc gattcggttc tgtttcaaac caatgctccc aaacagtttt
     6061 tgccttacca gtgtcgccgc gaccttctgc ttgttccgca gaccacgccg atccccacca
     6121 aaaatctttt ggaaacgtta ataattcttt cattttttat ggcctccctt ttgtcaaaat
     6181 aaatatagca tacatttatt taaaaaacaa tacttttatt aaaatatata tacttttgtt
     6241 tatagggata cctttttgta aaagtatatg gtatactatg cttattacat cagtaaagga
     6301 gccaataaaa tgtcgggaat ggctaaatac atggaaatat acatagatat ccgtgataaa
     6361 atcaaccaaa acaaatacga aattaacgag aaattgcctg atggggacag tatggctcgc
     6421 acgtatgatt gcagcaagct cactgtcaaa aaagcactgg atatgcttgt acaagaaggc
     6481 atgattatta gacgacgcgg ggctgggact ttcgtgaaat cccattcgac taacggcgga
     6541 gaattcgcgc ttgggccaat gtccggactt gtaaatacat ttggaaaaga caatattaaa
     6601 tccaaagtca ttttattttc tattgaaaaa ccatcgaaag aagtcgcaga gaaattagag
     6661 atgcaggatg actatattta ccgaatcatc cggatgagag aagttggtca taaagcctat
     6721 tcgattgaac atacttatat gccacttgcg attattccgg gtctagaacc acgtcattta
     6781 gaggactcga tttataatta tattcgggat gatttgaaac ttaagatgca gagtgcgcat
     6841 gtttgggtac gcggggataa atcaaatcaa gaggatagca agctcctcga tttagaagaa
     6901 cctactttta tgatggaaat tgaaaaatta gcgcatttgg aagatggtcg tgtgttcgaa
     6961 tattcgataa cgcgccatac gtatgaatcg tttgtgtttg aaacggtttt tgtgcagaat
     7021 taaaaaaaac agcgactctc tactaagaga atcgctgttt tttatatctt cttaacaaat
     7081 tctgatttta atttcattgg gccgaagccg tcaattttgc aatcaatgtc gtggtcgccg
     7141 tctactaggc ggatattttt tacttttgtt cccattttga ttgggtttga tgcgcctttt
     7201 actttaagat ctttgatgac tgtgacagaa tccccatctg ttagtacgtt gccgtttgca
     7261 tctttgaaca ctttttcttc ggtagcttct tctgctacag cgctccactc atggccgcat
     7321 tccgggcaga ttaataagcc gcgatcttcg taggcatact ctgagttaca ttctgggcaa
     7381 tttggtaatt ttggcatttt atcaattcct ccgattgttg taatagttgg ctgttaatct
     7441 tctaattcga cgttatgata tactttttgc acgtcttcta ggtcttctaa agcatcaatt
     7501 agtttctcga atttttctaa gtcctcacct gataattgaa tatcattttg aggaatcatt
     7561 tcgatttccg ctactgtaaa ttcttcaatt ccagccgctt tcaaaccttc ttgtactttg
     7621 tggaaatctt ctggttctgc ataaataatc gcttggccat cttcgtctaa aatatcacga
     7681 acatcaatat ccgcttccat taaaagttct aataactcat ccgcgtcttt tccttcaaca
     7741 ccaaaaatgg ctgtattatc aaacatataa gctactgaac cacttacgcc catgttgccg
     7801 ccgtttttgc tataagctgc gcgaacatcg gatgccgtac gattcacatt atttgtcagt
     7861 gcgtctacga taatcatcga accatttgga ccaaagcctt catagcgcag ttctgaatat
     7921 gtttcatcgc cagtgccttt cgctttttcg attgcacggt caataatatg tttcggcaca
     7981 ttgtatgttt ttgcacgttc aataacaaaa cgtaattttt ggttggcatg cggatctggg
     8041 tcgcccgatt tagccgctac atatatttca attccaaatt ttgcatagat acgactattt
     8101 gttttatctt ttgacgcttt tttctcttta atatttgccc atttacggcc catattacca
     8161 ctcgctttct aattggagtt ttctcgtgtc tctgtactat tataagtgta ggaaacgaat
     8221 ttgttaagtg gaaatttagc tatattcgtt aaaaatggat agatgtggcg tttttgaggt
     8281 taaaaagctg gtttaaaaag aagtatggaa taaattcgcc cgaacttctt aacacttcta
     8341 actcttcttt agtcacaaaa cgggcatctg ctacttcttc tttttgtaaa gttaagtcgc
     8401 taagttccac gtctttcgta ataaaccaat aatcatcaaa tcccgcttcg aaatggtaac
     8461 tgaatttggc acgggtgtta cttaaatcaa ttgtaatccc tagttcttct tgcacttctc
     8521 gttcagcagc ttggcgactt gtttcgcctt ttagcgcaga acccgccgca gaaagatccc
     8581 aataattcgg ccaaccttct ttatcttttt ggcgcttttg gattaaaagt tgcccttttt
     8641 cgttaaaaat acatacgtga acaaccaaat gaagttctcc gggcgctagt ttttcaccgc
     8701 ggatatgtgt tttcccagtt aattcacgat tctcatttag caaatcccat tcttccacta
     8761 aaatcggctc cttctaatca ttgacttgtt ttcattatac aacaaagtta ggatgataaa
     8821 ttttgcatat gtttttttat cgtatcgagc tcatttagca acatatctcg caatgaatct
     8881 ggctggatag ctataatttt ttcaccataa cctagtaaat aattgataat aaattgttcc
     8941 tctcctttat gataaaaacc atgaataaca tttttacctt gctgttggcg aagtttcatc
     9001 gatggataat tttctttaaa aaataagtca acaccatttg aggcaatttc cacttcaaag
     9061 gtagttacat cagctttttt attaaaagaa tcagccactc tttttaattc ctccattttc
     9121 ttagcttcaa aagtatcatt ttcttttagc gcaaggattt tatcacaacg aaatacctgc
     9181 atccgtttcg tctcgaagtt ataactcgtc acataccatt gcccgtatgc cgaagatata
     9241 ttataaaatt gaacaatata cgttttttca gtcccatttt tatcataatt aatctgacac
     9301 actttctctt ccatcgtaaa ttgcaaaata atatccagaa attcacattg attattatgc
     9361 tttatatagc cgagactaaa tacttcttct gtttttcgaa gcatttcgat tttttcagct
     9421 gaaagacaac gttcaaattt cgtttttaat ttttccacac ttaaatgaaa aggtgttgtt
     9481 tcataggctt ttaaggtaag catcgaaaaa tagagcgcaa atacctcatc gatattaaaa
     9541 acaatgggcg agagtagccg attacgaagc acccgataat gaccatttcg tccccgttcc
     9601 gaatatatcg gcatgcctat ttcttccaaa gactgtatat ctcgaatagc agtactgcgg
     9661 gaaacgccat attttgccat tatgtcgctt aattgaaacg aatttttatc atttaaaaac
     9721 aacatcatat catttaatcg ctctgctttt ctcatcgcca tctcttttct tttttcagat
     9781 taaaaggtgt cactaattga tacctttaac cattatacta taattagaaa ccaaaggagc
     9841 taaaaaatga tgaaaaactt atttttaacc tcgtctttta aagatgttgt accattattt
     9901 actgaatttg aaagcaatct ccaaggaaaa accgttactt ttatcccgac ggctagcacc
     9961 gttgaagaag ttgtttttta tgtagaagct ggtaaaaaag cgctcgagga tttagggtta
    10021 attgtagagg aactagatgt ggcggcagaa aatctagaag aaataacgat gacactcaaa
    10081 aaaaatgatt ttatttatgt tactggagga aatactttct ttttactaca agaattaaaa
    10141 cgaactggtg cagataaatt aattttaaag gaaattgcta aaggaaaatt atatattggt
    10201 gaatcagccg gtgcagtcat cacgagtcct aatatatcgt atatccaatc aatggacagc
    10261 gtaaaaaaag ccactaattt aaccaactat gatgctttaa atttagtcga tttctatacg
    10321 cttcctcatt acaacaacac accttttaaa aaaataacac aacaaataat agcggactat
    10381 gcggatgatt taaaaatatt tccgattagt aactgcgaaa ctatttttgt acaaggtaac
    10441 gtggtaactt cgaaaggaat tctttaacag cattctccaa aaacgccttg aaacttggat
    10501 atccgtttaa gtttcaaggc gtttttgttg tataataaaa ctaaaactac atcataggag
    10561 gtacaacatg tacaaaattt ttagtttcgt ttcattaata cttagtatg
//
LOCUS       DASEAA010000090        10432 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.090, whole genome shotgun sequence.
ACCESSION   DASEAA010000090 DASEAA010000000
VERSION     DASEAA010000090.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10432)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10432)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10432
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.090"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(45..1598)
                     /gene="cshA"
                     /locus_tag="U0342_001859"
     CDS             complement(45..1598)
                     /gene="cshA"
                     /locus_tag="U0342_001859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464392.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase CshA"
                     /protein_id="HEM2423203.1"
                     /translation="MTKFSEFGLDEKIVKSVNRMGFEEATPIQEKTIPLGLAGKDLIG
                     QAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLSYDKHVRVL
                     AVYGGSDISRQIRSLKKNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEMLNMG
                     FIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAKEMTALLIEQF
                     FVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDLTQ
                     AKRMSVLRKFKEGKIDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRA
                     GKEGMAITFVQPREMGYLRIVEETTKKRMQPLQAPTWDEAFAGQLRVATEKIQEAITE
                     ENLADYKTFANELLEKYDATDIAAAMLKMLAKEPDKTPVHITEERPLPSRGGGGYKGK
                     NGKGGKGGGYRGGSGKGGSYRDRNNSGKGRRSGGGSGSGGGGNRDRRSGGGEQRSGGN
                     KGNYSQKSK"
     gene            complement(2060..3733)
                     /locus_tag="U0342_001860"
     CDS             complement(2060..3733)
                     /locus_tag="U0342_001860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM2423204.1"
                     /translation="MTWQQHLNAWQNADLSDEWRRELQRVEQEQERFDGYLTFGTGGM
                     RGKMGVGTKRINLFTIRRVAKGLGDYVVANGGAEMGVAIAYDSRHHSGAFAQDTAKVL
                     AAQGVKVYLSDTIRPTPALSFCVREKGAFAGVVITASHNPSIYNGFKVYDKNGCQITL
                     GVAQEIAGYLENTTDIFTIPVRELPNPLVMTLGKEMDDAYLKALTAVVSRPDLLADYG
                     NELQICYTPLHGAGKELVMRGLLENGFSETTMIAEQSEPDGDFPTVVSPNPEEENSFE
                     LAKKQAKEIQADIILATDPDADRLGVAVLNKQATYQILTGNQLGALLLQYILEAKTSV
                     TQADTMINTIVTGDLGGRIAHDFGINHIQTLTGFKFIGEKIAEMEGTEKNFLFGYEES
                     YGYLIAPFVRDKDAVQAALLTAEMALFYKKEGTTLLQKLTNLYEKFGYHKEHLHTITL
                     DDSDGTTKMNQVIDDLRKEPTCIPGITVLEDFLTSKRTNLSTMEMTNIELPKENVLKF
                     YLNDNAWFAIRPSGTEPKCKIYFQTIGQTEEIATKAMDELKKCVLAKWD"
     gene            complement(3730..4797)
                     /locus_tag="U0342_001861"
     CDS             complement(3730..4797)
                     /locus_tag="U0342_001861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464390.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 130 protein"
                     /protein_id="HEM2423205.1"
                     /translation="MNIYRYEENPLITPLDVKPIHEGFEVIGAFNAGVAEYNGEVLLL
                     LRVAEKPVSEDPEVVLAPVYNAKSKELELQQFRLDDENYDFEDPRMIRSKAKLEGFSY
                     LTSLSYIRIARSKDGHQFTLDEKPFLYPFNEYQTFGIEDARVTQIGDTYHVNFSAVSE
                     FGVADALVTTKDFENLEYQGNIFAPENKDVLIFPEKINGKYYALHRPSLKSIGNLDIW
                     IASSPDLRSFGDHRHLLGIRPGEYDSGRVGGGCVPIKTEEGWLILYHGATEENRYVMG
                     AALLDLNDPTIVLKRTKTPILEPVADYEKNGFFGDVVFACGAIQEGDTLHMYYGVADT
                     SMAGCDMKISEILHQLEVENK"
     gene            complement(4819..5733)
                     /locus_tag="U0342_001862"
     CDS             complement(4819..5733)
                     /locus_tag="U0342_001862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1861 family protein"
                     /protein_id="HEM2423206.1"
                     /translation="MNTIENLLQVYRENSAAFGTRITLNGAGDKDVYNITAPFHWLGK
                     EYIAGRVESRDSEFSEVRFFEKIETDKYQLVENTTVLALQDPFVTFVQGELIIGGVEV
                     FPKETDPTMLDWRTNLYRATSLTDFEQILAGPIGMKDLRIKELADGRILVLTRPQGEK
                     GGRGKIGAIVIDSLAELTIEKIEAAPLLKRNFSGEEWGGGNELHLLEDERIGVLGHIA
                     CFDEAGNRHYYACSFRLNEDFSQIEQEKIIAERANFAPSEPKRPDLADVVFSGGLIRN
                     SDGTATLYAGIGDSDAQKLAIPDPFKNN"
     gene            complement(5735..7267)
                     /locus_tag="U0342_001863"
     CDS             complement(5735..7267)
                     /locus_tag="U0342_001863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464388.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucohydrolase"
                     /protein_id="HEM2423207.1"
                     /translation="MEFWRRSVFYEIYMKSFQDSNGDGLGDFKGLTSRLDYLVDLGID
                     GIWLTPFYPSPQVDNGYDVSDYCDINPDYGDMTDFRAFMKAADARGIKVIIDLVLNHS
                     STEHAWFKESRSSKTNPKRDYYIWREKPNNWESFFGGSAWEMDELTGEYYYHSFAKEQ
                     ADLNWANEAVRAEMEQVLAFWLNEGVAGFRLDVINNLTLVLEFTDNPVTSGEMEHVYD
                     RNQSGLEQALEDIASFCRKERDVFLVGEISSDQLAEIARYSSKKMLDVTFNFNFGSVD
                     QLDAKSVFTTLNEMETALNEGQWPTLFFGSHDMSRFRSRLASGDIVKTQLLAFLMLTA
                     KGVPFIYYGEEVGMPDLTFSSVKEMRDIQGTAAYYQALQTGSDEKQALEIAIEKTRDK
                     ARGPMIFPDGKPFTLGEPWIKMATLPEKEARTMWRFYQGLLAFRKENDFKEMEYTFLK
                     LDGEVLSYQRGEFIFLLHFGEEEVTYPLQGNYQLVFGEAVMVGNGIRMGAHTGIALRV
                     EE"
     gene            complement(7283..8116)
                     /locus_tag="U0342_001864"
     CDS             complement(7283..8116)
                     /locus_tag="U0342_001864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464387.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2423208.1"
                     /translation="MVGHNSKAGKIVRYILTTLLMLVMIYPFIYLVLNSFAAWDQVDK
                     KLIPTEFTTRSWDWLFGNSVVAAPAPWIHAFINTIIVSTIATGLMLLFGLMVGYALAK
                     VDFKGKKIVNNAILFQMFFPAIILLIPQFLMITDFGLLDTYAGMIIPTMLSLWAVFMY
                     TNFFKAIPDTLIEAAKLDGASDLKILFRVVLPMSKSITTVIFLFLFTDRWTNLLWDML
                     VTKSDGTVTLNVLISQMFGPYATYPGPMYAASVLLTLPLIILFLFFSKKFQEGMQFTL
                     K"
     gene            complement(8103..8981)
                     /locus_tag="U0342_001865"
     CDS             complement(8103..8981)
                     /locus_tag="U0342_001865"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2423209.1"
                     /translation="MKRRNNKLGWSFTSPYLIFTAIFFLVPLVWSIWLSVTDWNMMSP
                     EINFVGFDNFIKAFTSPAVQAAFFVTYKFLIVFVPMALIISMIVAVLVNGLPKFKGLY
                     LVAFFLPYLSSGVVTSLIVQGLLSYNSALNVFLRGHFGWDIDWLGTPMSALVIISLMI
                     AWKMSGYYALILISGLASINHEIYEAAAMDGSGRFRTFWKVTVPMLYPALFTVIVLAV
                     SVSFGIFTEVYQLTGGGPNFATNTWQMEIFNQAFVNLNSGYASAISLMAATVTFASIG
                     VIKKMLEKWGQRNGWT"
     gene            complement(8978..10297)
                     /locus_tag="U0342_001866"
     CDS             complement(8978..10297)
                     /locus_tag="U0342_001866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464385.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2423210.1"
                     /translation="MKIRKIAIAALSVVVAGSLLTACGGGNSKSDDNGKTKVTFWAAP
                     NPTQVKYWDEMAKAYEKENPDVTIEVSQMKESPSSEATIQSAIASKTAPTMSENINRS
                     FAAQLADSKAIVPLNDVKGLDDVVKERNMSETMDSWKFSDGNQYVLPVYSNPILFAWR
                     LDTLKELGYDAPPKTYSEALEVGKKLKAKYPDKVLWAKGDLSDPTAWMRWFDFFPLYD
                     AASKGNAFVEDGKLVADDKAGTELLTFMSELQKNKLLLASKATDPFETGTSIMADNGP
                     WTFPNWDEKFPELKYNENYAITAPLVPDNMANEENVATYADSKGVVMYAQATDKEKEA
                     AMDFLKFVYNDDKNDLKFLETTNLIPARDDATENETFTAFFKENPELEVYAANVPYSI
                     PAMDDAKYNDIQQIIGEEAWNPIVRGEKKPAKAWSDMKKAEDGVLQE"
BASE COUNT         3012 a         2387 c         1753 g         3280 t
ORIGIN      
        1 tttatctaca gtctatctat atggtaacta tttgtctaat aatcttattt agatttttgt
       61 gagtagttgc ctttgttgcc gccgctgcgt tgttctccgc cgccactacg acgatcacga
      121 ttgccaccac cgccagaacc gcttccgccg ccgctacgac gacctttgcc gctgttgtta
      181 cgatcgcggt agcttccgcc tttgccgctt ccgccgcgat agccgccacc tttgccgcct
      241 ttaccatttt tacctttgta gccaccgcca ccacgggatg gtaatggacg ctcttcagta
      301 atatggacag gagttttgtc tggctctttc gctaacattt taagcattgc tgctgcgatg
      361 tcagttgcat cgtatttttc aagaagttcg ttagcaaacg ttttgtagtc agctaagttt
      421 tcttctgtga ttgcttcttg aattttttca gttgctacgc gtaattggcc tgcaaatgct
      481 tcgtcccaag taggagcttg aagtggttgc atacgttttt tcgtagtttc ttccacaata
      541 cgtaaataac ccatttcacg aggttgtacg aaagtaatcg ccataccttc tttaccagca
      601 cgaccagtac gaccgatacg gtgaacatag ctttctggat cttgtggaat atcatagtta
      661 tatacatgtg ttacgccgga aatatcaagt ccacgagctg ctacgtctgt tgcaactaga
      721 acatcaattt ttccttcttt aaatttgcgt agtacactca tacgttttgc ttgcgtcaag
      781 tcaccgtgga taccttcagc cacgtaacca cgcatatcaa gcgcgcgaga tagttcgtct
      841 acacgacgtt tcgtacgacc gaaaacaata gctagttccg gtgcttgaac gtctaataaa
      901 cgagataata cgtcaaattt ttctttttca tgcactttta cgaagaattg ttcaattaat
      961 agtgcagtca tttctttcgc tttaatgcga ataagttctg ggctatgcat gaaacgttca
     1021 ccgatacggc gaattggatc aggcattgtt gcagaaaata gtaaagtttg acgttctgct
     1081 ggtacttctt ttagaatagt ttcgatatca tcaatgaagc ccatgtttag catttcgtct
     1141 gcttcatcta gtacaagtgt ttccacgtgg tctagtttca gtgtgcgacg gttaatatga
     1201 tccaaaatac gtcctggcgt accaactacg atttgtgggt ttttcttaag tgaacggatt
     1261 tgacggctga tatcgctacc accgtaaacc gctagcacac gtacatgttt gtcatagcta
     1321 agtttataaa gctcttcaga aacttggatt gcaagttcac gtgttggagc aataattaaa
     1381 gcttgtacgt tgttactctt ttggtcaatt ttgtgaatca ttggaagacc aaaagcggct
     1441 gttttaccag tacctgtttg tgcttgcccg attaagtctt tacctgctag tcctagtgga
     1501 attgtctttt cttggattgg tgttgcttct tcaaacccca tccgatttac tgattttaca
     1561 attttttcgt ccagtccgaa ctccgaaaat tttgtcaatg tcatttctcc tttacctgtt
     1621 taaagtttgg taggagagct acttttataa ttcatcacaa tacgcttatt acgattgttt
     1681 gtctgttcat ttgcagttgt ttttatgaaa actgctatct ttcattttca tttttctgca
     1741 atagaaaagc ctgggcgcac caagcaaaat gattcacggc atcagaaaat ttctctgcca
     1801 ttatagcagt tctaacgcat caaataaaaa agccctcatt aatcactagg ctaaatataa
     1861 acctaataaa cttccatcta tcatcataac acactaacga tttcttttca acgtcaaaag
     1921 cttatctttc cttgctatta tcgaataaaa aaacttaatt ctttttaaat gtacgcttat
     1981 ccgggttttt cagcgatttt tatagataaa tctttaaaaa aaagctgaaa atcgtccgaa
     2041 aacaatttcc agctttttat taatcccatt tggctaaaac gcattttttc aactcatcca
     2101 tagcttttgt cgctatttct tctgtttgac cgattgtttg gaaatagatt ttgcatttcg
     2161 gttccgttcc agaaggacgt attgcaaacc aggcgttatc gtttaagtaa aattttaaaa
     2221 cattttcttt tggtagctct atgtttgtca tttccatcgt tgaaagattg gttcgcttac
     2281 tcgttagaaa gtcttctaaa accgttatgc cgggaataca agttggctct ttgcgcaaat
     2341 cgtctatcac ttgattcatt ttagttgttc catcgctatc atctagcgta atcgtgtgca
     2401 agtgttcttt atgatagccg aacttttcat ataaatttgt tagtttttga agaagtgttg
     2461 ttccttcttt tttatagaaa agggccattt ctgctgtaag taatgctgcc tgaacggcgt
     2521 ccttgtcccg aacaaatggc gcgattaaat aaccgtaact ttcctcgtat ccaaaaagaa
     2581 agtttttttc cgtgccttcc atttcggcta ttttttcacc gataaatttg aaacccgtga
     2641 gcgtctggat atgattaatt ccaaagtcat gcgcgattct tccacctaag tccccagtaa
     2701 caattgtatt aatcatcgta tccgcctgag ttaccgacgt tttggcttct aaaatatact
     2761 gtaaaagcaa tgcgcctagc tgattccctg ttaaaatttg atacgtagct tgcttgttta
     2821 aaacagctac ccccagccta tcagcatccg gatctgtcgc caaaataata tcggcttgta
     2881 tttctttcgc ctgctttttg gctagttcaa aactgttttc ttcttctgga ttaggcgaaa
     2941 ccactgtcgg aaaatccccg tcaggctcac tttgctcagc aatcatggtc gtttccgaaa
     3001 atccattttc caaaagccca cgcataacaa gttcttttcc agctccatga agcggtgtgt
     3061 agcaaatctg tagttcatta ccgtagtcag caagcaaatc agggcgagaa acgactgctg
     3121 ttaaagcttt taaataagca tcgtccattt cttttcctag cgtcataacg agtggattgg
     3181 gtaattcgcg cactggtatg gtaaagatat ccgttgtgtt ttctaaatag ccagcaattt
     3241 cctgcgctac acccaatgtg atttgacagc catttttatc atatactttg aaaccattat
     3301 agatagaagg attgtggctt gctgtaatca caacgcccgc aaatgccccc ttttctcgaa
     3361 cgcaaaaaga tagcgctggt gttgggcgaa tcgtatcgga taaataaact ttgactccct
     3421 gcgccgccag gacctttgcc gtatcctgcg caaaagcacc cgaatgatgt ctcgagtcat
     3481 acgcaatcgc aacacccatt tcggctcctc cattcgcgac aacataatct cccaaacctt
     3541 tcgctactcg tctaatggta aaaagattga tgcgcttcgt tccaacgccc attttaccgc
     3601 gcatcccgcc agtcccaaag gttaaataac catcaaatcg ttcctgctcc tgttccactc
     3661 gttgtaattc acggcgccac tcatctgata aatcggcatt ttgccaagcg ttcaaatgtt
     3721 gttgccaagt catttgtttt ccacttctaa ctgatgtaga atttcgctga ttttcatgtc
     3781 acagcccgcc atagaagtat ccgccacgcc gtaatacata tgcagcgtat caccttcttg
     3841 aatggcccca catgcgaaaa caacatcacc gaaaaagcca tttttctcat aatcggcaac
     3901 tggctctaaa ataggcgttt tcgttctttt cagtacaatc gttgggtcgt ttaaatcaag
     3961 aagcgccgcg cccatcacgt aacgattctc ttcagttgct ccgtgatata aaattaacca
     4021 accttcttct gttttaatcg gcacacatcc gccgccaact cggccactat catattcacc
     4081 aggacgaatt ccaagcaaat gacgatgatc gccaaaactg cgcaaatctg gagaagaagc
     4141 aatccaaata tctaaattac caatactttt caaacttgga cgatgtaagg cataatattt
     4201 tccgttaatt ttttctggga aaattagtac atctttattt tcaggagcaa agatatttcc
     4261 ttgatactcc aaattttcaa agtcttttgt ggtcactaat gcatccgcta cgccaaactc
     4321 agataccgca ctaaaattca cgtgatatgt atccccgatt tgcgtcacac gagcatcttc
     4381 aatcccaaat gtctgatact cattaaacgg atataaaaac ggtttttcat ctaaggtaaa
     4441 ctgatgacca tctttactac gagcaattcg aatatatgaa agagaagtta aataagaaaa
     4501 tccttctagt tttgctttac tgcgaatcat tcgcggatct tcaaaatcat aattttcatc
     4561 atctaatcgg aattgttgta attctaattc tttacttttc gcattataaa ctggcgcaag
     4621 gactacttct ggatcctcac tgactggttt ttctgccaca cgaagaagta aaagtacttc
     4681 gccgttatat tcggcaacac cagcgttaaa agcgccaatc acttcaaaac cttcatggat
     4741 tggttttacg tccaaaggtg taattaatgg gttttcttca taacgataaa tgttcatttc
     4801 tactcaaaac tcctactatt agttattttt aaatggatca ggaattgcta atttttgtgc
     4861 atcagaatcg ccaatccctg cataaagtgt cgcagtaccg tccgaatttc tgattaaccc
     4921 accgctaaat acaacatccg ctaaatcagg tcttttcggc tcactagggg caaaattagc
     4981 acgttcggca attatttttt cttgctcaat ttgcgaaaaa tcttcattca atcgaaaaga
     5041 acatgcgtaa taatgacgat tgcccgcttc atcaaaacaa gcaatatgac caagcacgcc
     5101 aattctctca tcttctaaca aatgaagctc atttccgcca ccccattcct ctcctgaaaa
     5161 attccgtttc aaaagtggtg cagcttctat tttctctatt gttaattctg ccagtgagtc
     5221 aatgacgatt gcgccgattt tcccgcgacc gcccttttcg ccttgaggtc ttgttaatac
     5281 taaaatacgt ccatcagcca attctttgat acgtaaatct ttcataccaa ttggcccggc
     5341 aagaatttgt tcaaaatcag taagcgaggt tgcccgatat aaattagtac gccaatctaa
     5401 catagtcggg tccgtttctt tcggaaaaac ttctaccccg ccaataatca gctcaccctg
     5461 aacaaatgta acaaatggat cttgtagcgc taaaacagtc gtattttcaa ccaattgata
     5521 tttgtccgtc tctatttttt caaaaaagcg tacttccgaa aactcgctat cacgcgactc
     5581 cactcgacct gcaatatatt ctttcccaag ccaatgaaat ggtgccgtaa tattgtatac
     5641 atctttgtcg ccagcaccat ttaacgtgat acgtgtccca aacgcagcac tattttcccg
     5701 gtaaacttgc aacaaatttt cgattgtatt cattctattc ctccactcta agcgcaattc
     5761 cagtatgcgc gcccattcta atgccatttc ctaccatcac tgcttctcca aaaacaagct
     5821 gatagttccc ctgaagcgga taagttacct cttcctcacc aaaatgaagt aaaaagataa
     5881 attcacctcg ctgataactg agtacttctc catccaactt caaaaaagta tattccatct
     5941 ctttaaaatc attttcttta cgaaatgcga gtaatccttg ataaaatcgc cacatcgttc
     6001 gtgcttcttt ttccggcaaa gtcgccattt taatccatgg ttcacctaga gtaaatggct
     6061 ttccatctgg gaaaatcatc ggcccacgtg ctttgtcacg cgttttttca atagcgattt
     6121 cgagtgcttg tttttcatct gaaccagttt gtaaagcttg atagtacgcg gctgtccctt
     6181 gaatatcgcg catctctttt acggaagaaa acgttaaatc aggcataccc acctcttctc
     6241 cgtagtatat aaacggcacg cctttcgcag ttaacattaa aaatgcgagc aactgggtct
     6301 ttactatgtc tccagatgcg aggcgacttc tgaacctgct catatcatga cttccaaaga
     6361 aaagcgtcgg ccactgccct tcatttaatg ccgtttccat ctcattcaat gtcgtaaata
     6421 cagattttgc atctagctga tcaacactgc caaaattaaa attaaatgtg acatctagca
     6481 tttttttcga gctatatcta gcaatttcag ctaattggtc cgagctaatt tcgcctacta
     6541 aaaacacgtc gcgctctttt cgacaaaagg aagcgatatc ctctaacgct tgttctaagc
     6601 cactctgatt acggtcatac acatgctcca tttcaccaga tgtgactgga ttatccgtaa
     6661 attcaagtac gagcgttaaa ttattgataa catctaacct gaatcccgcc actccctcat
     6721 tcaaccaaaa cgctaaaact tgctccattt ctgcgcgaac agcttcattc gcccagttta
     6781 agtcagcctg ttcttttgca aaactatgat agtaatactc gccagtaagt tcatccattt
     6841 cccaagcaga accaccaaaa aacgattccc aattatttgg tttttctcgc caaatataat
     6901 aatctcgttt aggattcgtc ttactactac gcgactcctt aaaccaagca tgctctgttg
     6961 acgaatgatt taatactaag tcgataataa cttttattcc tcgagcatct gccgctttca
     7021 taaacgctcg aaaatcagtc atatcgccgt aatccgggtt aatatcgcag taatcagaca
     7081 catcataacc attatccact tgcggtgaag gataaaatgg agtcaaccaa ataccatcaa
     7141 tccccaaatc cactagataa tctaatctgc tcgttaaacc tttaaaatca cctaaaccat
     7201 cgccattact atcttgaaat gatttcatat aaatttcata aaacacacta cgacgccaaa
     7261 attccaagtt cagtcgctcc ttttatttca aagtaaattg cattccttct tggaatttct
     7321 tcgagaagaa taagaacaag ataataagtg gaagtgttag taacacagat gccgcataca
     7381 ttggcccagg ataggttgca tatggtccaa acatttgcga gattagcaca ttcaatgtga
     7441 ccgttccatc actcttcgtt acaagcatat cccaaagtaa attcgtccat ctgtctgtga
     7501 aaaggaataa gaaaataacg gtcgtaattg atttagacat tggcagcaca acccgaaaca
     7561 aaatcttcaa atcactcgcc ccgtccagtt tggcagcttc aattaatgta tctggaatcg
     7621 ctttgaaaaa gttggtatac ataaatacag cccataagct aagcatagtc gggataatca
     7681 ttcccgcata ggtatccaat aaaccaaagt ccgtaatcat taaaaactgc ggaatcagca
     7741 agatgattgc cggaaaaaac atttgaaata aaatcgcatt attaacaatt ttcttgccct
     7801 taaaatccac ttttgctagt gcgtagccta ccattaggcc gaaaagcaac atcaagcctg
     7861 tcgcaatggt ggaaacaata attgtattaa taaacgcatg aatccacggc gccggtgccg
     7921 caacaactga attaccaaat aaccaatccc acgaacgagt agtgaattct gtaggaatca
     7981 actttttatc tacctgatcc caagcagcaa atgagtttaa tactaaataa ataaaaggat
     8041 aaatcatgac tagcataagt aatgttgtca gtatatagcg aacaatttta cccgctttac
     8101 tattatgtcc aaccatttct ttgaccccat ttctcaagca ttttcttaat aacaccaatc
     8161 gatgcaaatg ttacagtagc agccattaga gaaatcgctg aagcataacc agaattcaag
     8221 ttaacgaatg cttggttaaa aatttccatt tgccatgtat ttgttgcaaa gttcggtcca
     8281 ccaccagtca attggtaaac ttcggtgaaa atcccaaaac taacgcttac cgctaaaaca
     8341 attacggtaa ataaagctgg atatagcatc ggaacagtga ctttccaaaa tgttctaaat
     8401 ctaccagaac catccattgc tgcagcttca taaatttcat gattaatgct agcaagtcca
     8461 gaaattaaaa tgagcgcata gtaaccagac attttccaag ctatcattag tgaaataata
     8521 acgagcgccg acattggtgt cccgagccaa tcgatatccc aaccaaaatg cccgcgtaaa
     8581 aacacattca gcgcactatt gtatgaaagt aacccttgca caataagcga agttacaacg
     8641 cctgaagaca aatacggtag gaaaaacgca accagataaa gtcctttaaa tttcggcaag
     8701 ccgttcacta ataccgcgac aatcatcgaa ataattaacg ccataggaac aaaaacaatc
     8761 aaaaatttat aagtaacaaa aaaggctgct tgaactgctg gactagtaaa cgctttaata
     8821 aaattatcaa agccaacaaa attaatttcc ggactcatca tgttccaatc agttacagat
     8881 aaccaaatcg accaaacaag cggtactaag aaaaatatcg cagtgaatat gagatacggg
     8941 ctggtaaatg accagcccaa tttgttattt cgccgcttca ttcttgaagc accccgtcct
     9001 ccgctttctt catatctgac caagctttag caggtttttt ctccccgcgt acaatcggat
     9061 tccacgcttc ttcaccaatg atttgttgaa tatcattata ttttgcgtca tccatcgcag
     9121 ggatactata tggtacatta gctgcataaa cttcgagttc tggattttct ttaaagaatg
     9181 ctgtgaaagt ttcgttttct gttgcatcat cacgcgcagg aattaagtta gttgtttcta
     9241 agaatttcaa gtcatttttg tcatcgttat aaacaaattt caagaaatcc attgctgctt
     9301 ctttttcttt atctgtcgct tgtgcataca ttacaacgcc tttcgaatca gcgtatgtag
     9361 caacattttc ttcattcgcc atgttatctg gtactagtgg cgctgtgatt gcatagtttt
     9421 cgttatattt aagttccggg aatttttcat cccagttagg gaaagtccac gggccattat
     9481 ctgccatgat gcttgttcca gtttcaaatg gatctgttgc tttacttgca agaagtaatt
     9541 tgtttttttg caattcggac ataaatgtta ataactctgt tccagcttta tcgtctgcta
     9601 ctaatttgcc atcttctaca aatgcatttc ctttagaagc tgcatcataa agtgggaaga
     9661 aatcaaacca gcgcatccaa gcagttggat cagataaatc accttttgcc caaagaactt
     9721 tgtctggata tttcgctttt aattttttac caacttcaag cgcttcacta tatgtttttg
     9781 gcggtgcatc atagccaagt tctttcagtg tatctaaacg ccaagcaaaa agaattggat
     9841 tggagtaaac tggtagcaca tattggtttc cgtcagagaa tttccaagaa tccattgttt
     9901 cgctcatgtt tcgttctttg acaacatcat caagtccttt tacatcgttc aaagggacaa
     9961 tcgctttact gtcagctaat tgtgcagcga aactacgatt gatattttca gacatggttg
    10021 gtgccgtttt agaggcaata gctgattgga tagttgcttc cgaagatggg ctttctttca
    10081 tttgggaaac ttcaatcgtt acatctggat tttctttttc ataagctttt gccatttcat
    10141 cccaatattt tacttgcgtt ggatttggag ctgcccaaaa cgttactttt gttttaccat
    10201 tatcgtcact tttgctgttt ccaccaccac aagcagtaag taatgaccca gcaaccacaa
    10261 cactaagagc tgcaatagca atttttctaa tcttcatatc aataatcctc ctaattccac
    10321 tttttgtaat tgtaagcgct tgattacgat tacattatca cattacattt ttgtaatgtc
    10381 aataattact tttataaaac ctaataaaat tgaggttaat ttacccataa aa
//
LOCUS       DASEAA010000091        10168 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.091, whole genome shotgun sequence.
ACCESSION   DASEAA010000091 DASEAA010000000
VERSION     DASEAA010000091.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 10168)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 10168)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..10168
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.091"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1327)
                     /locus_tag="U0342_001867"
     CDS             complement(<1..1327)
                     /locus_tag="U0342_001867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465662.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HEM2423211.1"
                     /translation="MLLTKSEHALINLFLTKNDFLTAKQLAEILDVSSKTIYRKIKNI
                     NETTGRKDIIISEKGRGFKLDYKAYIQAKLETTGDIFGYTPTERREKILLQVLFKSPK
                     YLNVTELYEDYYVGYNSIKNDFSLLNQAIEKYDLALEKRQKEIRVVGTEENIRTAINE
                     VINNLDLSTYDDLKTEYSDLNKADVQFIVRQMELIENKLMISIPYPYDINIFSHLYIL
                     INRFRQGEVEDFKESDDAYIVTNEKLHTIAVEAIDAIEQYLKMKLPERETFHFLQYLI
                     SSRFNHEIELVPGKILPIVEEMTDFYIEQVAAKINMPINKKQLKIELLSHMKPMVNRM
                     NHQINIKNNLLSDIKLEYGRLFEIIKETANDVAKTFKLNTISDDEVGYITIYFAKHME
                     ASPLVKRIIIMCSSGIGTSELLKVKVQKAFPDVEIVDVLSSTRFKNNLQD"
     gene            1523..2425
                     /locus_tag="U0342_001868"
     CDS             1523..2425
                     /locus_tag="U0342_001868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465663.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423212.1"
                     /translation="MTLELHNVTKKFGTKVAVNDLSFRVEPGKILGLIGQNGAGKTTT
                     FRLILHFLEATSGKITWDGKEVSKIDPNIIGYLPEERGLYPNVTIEEQLIFFAELKGY
                     PKQKIKAEIDSWLERAEIVGKKTDLIKTLSKGNQQKIQLLSTIIHQPKLVILDEPFSG
                     LDPVNAEILKKFVFDLRASGAAIIFSSHRMENVEELCDSLLMLKKGNVVLQGTTESVK
                     AVFGRKRILIESSHSAAELATLPGVLNVQTHRDGVLQLEIENESDAEKIFEYVTKDGF
                     IQTFSLQAPTLEEIFKWKAGELNE"
     gene            2418..3653
                     /locus_tag="U0342_001869"
     CDS             2418..3653
                     /locus_tag="U0342_001869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465664.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423213.1"
                     /translation="MSKFWVITKQVYKRRVKTKSFLISLLFPVLIAALIAGIPKMVDY
                     FDSSSDITKLAVLAEDPVFAKSLAADKNHFKVNTDIKDKKSAQSALKDGKIDGFVTIT
                     QEDDSVSAVYTTQETAGQDTITRLTEDLTATKIAEKAAAYKITNEQLQSITSPVSVTN
                     DLESNNQLTNHEKDVMSAAVLILTLVIFIFVMSYANIVASEIATEKGTRIMEVILSSV
                     SATTHLFAKLTAIIFMLLTQIGFYIVCGAIVLIAGRNTEMVQNVLDQIAVFPAYYLVL
                     NLLFVILGLLLYILLAAMIGSMVPNVETVAQFIYPMTILAIIGYWGSIAAANAPDNML
                     VIIGSYIPTFSPMMMLARMDLLSVSTIGIFSSLAILLASVVGAFFLTVRLYQGNVLLY
                     SNDGLWKTWKTSLSYAKRK"
     gene            3670..4143
                     /locus_tag="U0342_001870"
     CDS             3670..4143
                     /locus_tag="U0342_001870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423214.1"
                     /translation="MQIRLSKREDAASMIELEHLVWTPGTTPGSIHFDSEAEFLLKSP
                     PGSKIVVVADDKVVGILGYKSPIPLATNKHVAEIDIAVHPDYQRAGIGQLLMDKMKEV
                     AREKGFIKIALRVLSINQKAIRFYEKNGFKLEGRLEKEFIIQGEFVDDILMAYFL"
     gene            complement(4733..5398)
                     /locus_tag="U0342_001871"
     CDS             complement(4733..5398)
                     /locus_tag="U0342_001871"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2423215.1"
                     /translation="MEKSGFVADPIYGEIKNEIMANTLENGEKVDIEDIMKRFQVSKR
                     VAFSALHCLHKSGIVCKNIGESGFSVAVNSEAEHREKSRLKLAFFHLNYAVQKLQEQD
                     AEVCATCLRKELVYIKLAAKEQDTDVFINHVKNFYACMIHYTEMPAMEKNIDILSQTL
                     RNMKEKNEKLFFEAFTIDVSQALEDLVTHLEAKEFEKCHSVIQHFYDKNISILFSESK
                     NPE"
     gene            5612..7354
                     /locus_tag="U0342_001872"
     CDS             5612..7354
                     /locus_tag="U0342_001872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465667.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase"
                     /protein_id="HEM2423216.1"
                     /translation="MTTYDLAPEVKIHQFDGAWAGYKDIATELRTAIQKKKQDQTIVA
                     IECYPGTRNEEIAAELLPLLPVEKVVFADDWALNNEEVTATIQSHLTDDRVFGIMSHY
                     EVSDFYPAEKLAEIQAEIAATKGLVVVYGTGATVIAPTPDILIYADLARWEIQCRYRG
                     ENKPNWKADNAGEDALRKFKRGYFFEWRMADRQKKKLYQQVDFLLDTNKKNEPKMVRG
                     EDYRNGLNQVSKAPFRVVPYFDASVWGGQWMKNNFGLDPAADNYGWAFDGVPEENSLY
                     MRFGDIRIEVPSTNVVNHFPNELLGPKVHSRFGTEFPIRFDYLDTVGGGNLSLQVHPL
                     VEYAQDKFGIHYTQDESYYILEADNDSTVYLGTKEGTTKEAIMTDLEKAAEGNYRFPD
                     EKYINVFPVKKHDHILIPAGTIHCGGPSTVVLEISATPYIFTFKLWDWERTGLDGMPR
                     PVHLEHGRENLQLDRDTKWVKDNLINQFETLHEDNDSKVERTGLHELEFIETHRHWFK
                     ETVTVHTNDSVNMLNLVEGESAVVESIDDSFAPFEVHYGETFIVPAIVGTYQIRNTSD
                     NEEVAVIQAFVRNL"
     gene            complement(7393..8127)
                     /locus_tag="U0342_001873"
     CDS             complement(7393..8127)
                     /locus_tag="U0342_001873"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465668.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2423217.1"
                     /translation="MVRKLNKMYDASPLYAQIADDLREKIQTEVWQTGDKIPPELDLC
                     ELYNVSRITVRKAIDELVRENLLYRERAKGTFVRDWEEAEDEHFTLVRSFTNEMKELG
                     KKAATLHAEVEVINADKKIALQLGLSVGDKVLQIKRLRGTKDLAFALFISFIPYNQDY
                     SLKAEDYYGSFYEYLKGFGIVVNQEKEYIEAMLPNREVQEALAIDKQEPILKRVRMTK
                     QKESDFREYSECFYIGKHYRYYIDFE"
     gene            complement(8242..9258)
                     /locus_tag="U0342_001874"
     CDS             complement(8242..9258)
                     /locus_tag="U0342_001874"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465669.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit IIC"
                     /protein_id="HEM2423218.1"
                     /translation="MKEYFIDRSYKASMGIANAVLVTLGIGLLLQTIGQMTGISFLVT
                     VGAIGKTMLIPGIGVGIAMCLHANTLVTISAAASAVIGGGAVATLAGGGVAITSGEPV
                     GAILAVIVAVWTGKRVTGKTKFDMILIPGVSLLAGGLSGILFAKIMAPILASVSLGIS
                     SLIGGSPLISSMVIAFVFGLLILSPASSAALAIALQLDPTASAAALIGCSVQFVSFAV
                     LSYRDNNWGAFFAQLICTPKLQTPNIIRKPSLMLVPLLTTLIAGPLGVMVFHIQAASE
                     VAGLGLCAFVAPLYLIANYGFSTLAAFILVAVVLPGVIALIVRPFLIKKERLKTGDLT
                     IELQ"
     gene            complement(9327..>10168)
                     /locus_tag="U0342_001875"
     CDS             complement(9327..>10168)
                     /locus_tag="U0342_001875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465670.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2423219.1"
                     /translation="RTYIRVVELQSFTKAAEELHISQPAVSLQLKKLEEIYETELIYR
                     QAKKFILTATGEILYHRAKQLEGLYKQVEDEISLYHHHLKGRLRIGASFTIGEYFLPE
                     VIAKFHALYPDITIELIIENTAKIADKVELLQVDTGLIEGQVSKKDLEISAFSDDEMC
                     IVGRADGSLTEIEQGATWIAREEGSGTREYLDHVLSTNGWNVAEKVVAWSNMAVKQMV
                     LEGMGYTVISKCVVQTEITSGKLQTFNEAGSLMRKFSVLKNRQRLENRIAETFLTFLK
                     ENQ"
BASE COUNT         3173 a         2028 c         1816 g         3151 t
ORIGIN      
        1 agtcttgcaa gttatttttg aatcttgtag atgataaaac gtctactatt tcaacatctg
       61 gaaaagcttt ttgaaccttt acttttaaaa gttctgacgt cccgatgccg cttgaacaca
      121 taatgataat tcgtttgact agaggagacg cttccatgtg tttcgcaaaa tatatggtaa
      181 tatagccaac ttcatcatca gaaattgtgt ttaatttaaa ggtttttgct acatcatttg
      241 cagtttcttt gatgatttca aatagtctgc catactctaa tttgatgtcg cttaacaaat
      301 tattctttat attaatttga tgattcattc ggttgaccat tggcttcata tggctcaata
      361 gctcgatctt taattgcttt ttattaatcg gcatattaat tttagcagcc acttgttcaa
      421 tataaaaatc agtcatttct tccacaatcg gtaaaatttt acctggaact aattcgattt
      481 catggttaaa acgagaagaa atcaagtatt gtaaaaaatg gaaagtctct ctctccggta
      541 gcttcatttt caaatattgt tcaattgcat caatggcttc tacagcaatc gtatgcaatt
      601 tttcatttgt gacgatataa gcatcatcac tttctttaaa atcttctact tccccttgac
      661 ggaaacggtt gattaaaata tacaaatgtg aaaagatatt aatatcatac ggatacggaa
      721 tgctaatcat cagcttgttc tcaatcaact ccatttgccg cacaataaac tgaacgtcag
      781 ctttattgag atcactgtat tctgttttca aatcatcata ggtcgataaa tccaagttgt
      841 taatcacttc attaatggcg gtccggatgt tttcttcagt gccaacaacc cgtatttctt
      901 tttgcctttt ttcaagagcc aaatcatatt tctcgatggc ttgatttaaa agagagaaat
      961 catttttgat tgaattatac ccaacataat aatcttcata cagctctgtt acattcaagt
     1021 actttggtga tttaaacaat acttgcagca agattttttc acgtctttct gttggtgtat
     1081 agccaaaaat atcacctgtc gtttctaatt tagcttgtat gtaagcttta taatctaact
     1141 taaaaccacg ccccttttca gaaatgatga tatcctttct tccagttgtc tcattgatgt
     1201 ttttaatctt gcgataaatc gttttagagg aaacgtctag aatttcagct aattgctttg
     1261 ctgtcaaaaa atcgtttttc gttaagaaca agttaattaa tgcatgctcc gatttggtta
     1321 gaagcatttc atcacctccc tctacgctct attatacaca aataaaagaa aacggttaca
     1381 acaagttatg tccactacac tagacaattt tttggctgag tttgtgaaaa aagtcgtcgt
     1441 cgtagctctt tacttttagc aagacaatcc tccaataaaa ccgtataata aaaacaggga
     1501 acaattagaa aggggtgctc gtgtgacgct tgaactacat aatgttacga aaaaatttgg
     1561 aacaaaagtc gctgtcaatg atttatcgtt tcgagtagaa ccaggaaaaa tactcggatt
     1621 aattggtcaa aatggcgctg gtaaaacaac tacttttcgc cttattttgc attttttaga
     1681 agctacttct ggaaaaatca cttgggacgg caaagaagta agcaaaatcg atccaaatat
     1741 tatcggttat ttgcccgaag aacgtggttt atatccaaat gtcacaattg aagaacaatt
     1801 aatatttttt gctgaattaa aaggatatcc aaaacaaaaa ataaaggcag aaattgatag
     1861 ctggctagaa cgcgctgaaa ttgtcggtaa aaaaacagac ttgatcaaaa cactatccaa
     1921 aggcaatcaa caaaaaattc agcttttaag tacaattatt caccaaccaa aactagttat
     1981 cttagatgaa ccattcagcg ggttagaccc agtcaatgca gaaattctca aaaagtttgt
     2041 atttgactta cgcgcttcag gggctgctat tattttttct agtcatcgga tggagaatgt
     2101 ggaggaactt tgcgactcgc tattaatgtt aaaaaaagga aatgtggtcc tccaaggaac
     2161 aacggaatct gtaaaagcgg tttttggtcg taaacgtatt ttgattgaat ctagccatag
     2221 tgcagcagaa ctcgctactt taccaggtgt tttaaatgtt caaacccacc gcgacggggt
     2281 tctgcaactt gaaattgaaa atgaaagtga cgcagagaaa atttttgaat atgtgacaaa
     2341 agatggtttc attcaaacgt ttagtctcca agctccgacg ctcgaagaaa ttttcaaatg
     2401 gaaggctggt gagctaaatg agtaaatttt gggtgattac gaagcaagtt tacaaaagac
     2461 gcgtgaaaac aaaatcattt ttaatttcac tactttttcc cgttttaatc gccgcgctca
     2521 tcgctggtat tccgaaaatg gtcgactatt ttgactcaag tagtgatatt acaaagcttg
     2581 cggtacttgc agaagaccct gtttttgcca aatctttggc tgctgataaa aatcatttca
     2641 aagtaaatac ggacattaaa gacaaaaaat ccgcccagtc tgctctgaaa gacggtaaga
     2701 tagacggatt tgtcacgatt acacaggaag atgattcagt aagtgccgtt tatacaacgc
     2761 aagaaacagc tggtcaagat actattacac gtttaaccga agaccttaca gctaccaaaa
     2821 tcgctgaaaa agcggccgct tataaaatca ccaatgaaca attgcaatct attacatctc
     2881 ctgtttcggt aaccaatgat ttagaatcca acaatcagtt aacaaaccac gaaaaagatg
     2941 tgatgagcgc cgctgtcctg attttaacac tagttatttt tattttcgtg atgagttatg
     3001 caaacattgt tgcttctgaa atagctacag aaaaaggcac gcgcatcatg gaagtcattt
     3061 tgtccagtgt ttctgcgaca actcacttat ttgccaaatt gactgcgata atttttatgc
     3121 ttttaacaca aattgggttt tacatcgttt gtggagctat cgtcctgatt gctggcagaa
     3181 acaccgaaat ggttcaaaat gtcttagatc aaattgctgt tttcccagcg tactaccttg
     3241 tgctaaattt actatttgtt attttaggtt tgttgttgta cattttactc gcagcaatga
     3301 ttggttcgat ggtcccgaat gtcgaaactg tagcccagtt tatttatcca atgacaattc
     3361 ttgcaattat cggctactgg ggatccattg cagcagcgaa cgcgccagat aatatgttag
     3421 ttatcatcgg ttcgtatatt ccgacattct cgccaatgat gatgctagcc cgaatggact
     3481 tactttccgt ttcgactatc ggcatcttta gctccctcgc tattttactc gcaagcgttg
     3541 ttggtgcatt cttcctcaca gttcgtcttt atcaaggaaa tgtgctactt tacagcaatg
     3601 acggtttatg gaaaacttgg aaaacctcgc tatcttacgc aaaaagaaaa taaggaaagt
     3661 tggtaaatta tgcaaattag actatctaaa cgagaagatg ccgcttcaat gattgaatta
     3721 gaacatttag tttggacgcc aggaacaaca cctggaagta tccattttga tagtgaagcc
     3781 gaatttttac ttaaaagccc acccggttcc aaaattgttg tcgtggcgga tgataaagta
     3841 gtcgggattc ttggttataa gtctcctatc ccactcgcaa ccaataaaca cgtcgcagaa
     3901 attgatatcg ctgtacatcc agactaccaa cgcgcgggca ttggtcaact tttaatggac
     3961 aaaatgaagg aagtggcacg cgaaaaaggt ttcattaaaa ttgccttgcg tgttctatcc
     4021 atcaatcaaa aagccattcg tttctatgaa aaaaatggtt ttaaactgga aggacgccta
     4081 gaaaaagaat tcattattca aggcgaattt gtggatgata ttttaatggc ttatttcctc
     4141 tgacaaaagg cctggcttaa aattcaaact gtgactttat aatcatttta caaataaagc
     4201 gtttacattt atttagaacg gttatatata aagtacaacg aacaaataaa aggtgatgcg
     4261 aatgaaacaa acttggtgta caagctgatt tttttctcag ctttgtcata tgccggcaaa
     4321 acgtctggtg aaggatttta gtgtcaagca gctacggtta gcttacagga ggaaggcgag
     4381 gagtatacgc cgcgtcaagg actttacgct aacttagttg taggaagacg gaatttcgtt
     4441 acgtcgctcg tttatcaata tttttatcct cactacattg gtaaataagc gaataaagta
     4501 tcgtatcatt tatggccact atttaagcaa gttacgggcg ctcatttatt cgtaagctag
     4561 aatatcttga gaagtaagta gcaagacaaa gaattcgcct acttgtttga aaatgcctca
     4621 ccgttttccg aatgttgtat gtttattcag aaacatccag acatggtccg gcccatcaga
     4681 tgagtggcaa gacaagctca tccgaaaaga aaaaccccgc gtgacgaaat cgtcattcgg
     4741 ggttttttga ttctgaaaac aagatagaga tattcttatc ataaaagtgt tgaatgactg
     4801 agtggcattt ttcaaattct ttcgcttcta gatgcgttac caagtcttcc agggcctgcg
     4861 aaacatctat cgtaaaagct tcgaaaaata gcttttcatt cttttctttc atatttcgca
     4921 gcgtttgact cagtatatcg atatttttct ccatcgccgg catttctgta tagtgaatca
     4981 tgcaagcata aaagtttttc acgtgattta taaatacatc tgtgtcttgc tccttagcag
     5041 ctagttttat ataaactaac tccttacgaa ggcatgttgc gcatacttct gcgtcttgtt
     5101 cttgtagttt ttgtacagca taatttagat gaaaaaaagc taactttaat cgtgattttt
     5161 cgcgatgctc agcttcacta ttcacggcga ctgaaaaacc gctttcccca atgtttttgc
     5221 acacaatacc actcttatgt aaacaatgga gcgcactaaa agctactcgt ttgctgactt
     5281 gaaatcgttt catgatgtct tctatgtcca ctttctcgcc attttccaac gtattggcca
     5341 ttatctcatt cttgatttct ccataaatcg gatctgcaac aaatccactt ttttccataa
     5401 ttcgaacctc tttatttttt attgctttca atgttatatt ttacacgaaa tttttccatt
     5461 tagatatggc tttttgcgaa aaaatgtgtc cattacgtta caaaaacgat tgtattgtta
     5521 taacaaaaat agacaataga ttgtaatgac aaaatagata tacaatgcta tatttatatt
     5581 gtaataacaa tataatcaag gagtgattgt tttgaccacg tacgatttag cacccgaagt
     5641 gaaaatccac caatttgatg gtgcttgggc gggttacaaa gatattgcta cagaactaag
     5701 aacggctatt caaaaaaaga agcaagacca aactatcgtt gcgattgaat gttaccccgg
     5761 aacacgaaat gaagaaattg ctgccgaact acttccatta ttaccagtcg aaaaagtggt
     5821 ttttgcagat gattgggcat taaacaatga agaagtaaca gctacaatcc aatctcactt
     5881 aacagatgac cgggtgttcg gcattatgtc ccactatgaa gtgagcgact tttatccagc
     5941 agaaaaactt gctgaaattc aagcggaaat tgctgctact aaagggttag ttgtggttta
     6001 cgggactggc gcaactgtta tagcaccaac accagacatt cttatttatg ctgatttagc
     6061 tcgatgggag attcagtgcc gctaccgcgg agaaaataaa cctaactgga aagcagacaa
     6121 tgccggtgaa gatgcgcttc gtaagttcaa gcgtggttat ttcttcgagt ggcgcatggc
     6181 tgatcggcaa aagaaaaagc tttatcaaca agtagatttc ttacttgata ccaataaaaa
     6241 aaatgagcca aaaatggtgc gcggagaaga ttatcgaaat ggcttgaatc aagtttccaa
     6301 ggcccctttt agagtagttc cttactttga tgcaagtgta tggggaggtc agtggatgaa
     6361 gaataacttt gggcttgatc ctgcagctga taattacggc tgggcatttg acggcgttcc
     6421 agaagaaaat agtttataca tgcgatttgg agatattcgg attgaagttc cgtctaccaa
     6481 tgtagtaaac cattttccga atgaattact tgggccaaaa gtacatagcc gtttcggtac
     6541 ggaattcccg attcgtttcg actatctcga tacagtgggt ggagggaatt taagtctgca
     6601 agtccatcca ttagtagagt atgcgcaaga taagttcggt atccattata cccaagatga
     6661 aagttattat attttagaag cagataacga ctctaccgtg tatcttggaa caaaagaagg
     6721 tacaacaaaa gaagcgatta tgacagattt agaaaaagcc gctgaaggaa attaccgttt
     6781 tcccgatgaa aaatatatta atgtcttccc tgtaaaaaaa catgaccata ttttaattcc
     6841 agctgggacg attcattgtg gtggtccaag taccgtcgtc ctagaaatta gtgcaactcc
     6901 ttatatcttc acgtttaaat tatgggactg ggaacgcact ggactcgatg gcatgcctcg
     6961 ccctgttcat ttagagcacg gcagagaaaa tttacagctt gaccgcgaca ccaaatgggt
     7021 aaaagacaac ttaataaacc aatttgaaac attacatgaa gataacgatt caaaagtaga
     7081 gcgcactggt ttgcatgaat tagaatttat tgaaacccac cgccactggt ttaaagaaac
     7141 ggttaccgtc catacaaacg atagcgtcaa tatgctcaat ttggtagaag gagaaagtgc
     7201 tgtcgttgaa agtattgacg actctttcgc accgtttgaa gtgcattatg gagaaacatt
     7261 tatcgttcct gcgattgtcg gaacttatca aatcagaaat acgagcgata atgaagaagt
     7321 ggctgttatt caagcttttg tacgtaattt ataaaaaaga aatgcctatc aatatttttg
     7381 ataggctttc ttttattcaa aatcaatata atagcgataa tgctttccta tataaaaaca
     7441 ttcgctgtat tctctaaaat cactttcttt ttgtttcgtc atccgcaccc ttttcaaaat
     7501 tggttcttgt ttgtcgattg cgagcgcttc ctgtacttca cgattaggca acatcgcttc
     7561 aatatattcc ttttcttgat tcacgacaat accgaagcct ttcaaatatt cataaaaaga
     7621 accgtaataa tcttctgctt taagtgagta atcttgatta taaggaataa aactgataaa
     7681 taaagcaaat gccaagtctt tcgtaccgcg tagccgctta atttgtagca ccttgtcccc
     7741 gacagaaagc cctagctgta acgcaatttt tttatcggca ttgatcactt ctacttccgc
     7801 atgtagcgta gccgcctttt taccaagttc tttcatctca ttcgtaaaac tgcgcactaa
     7861 cgtaaaatgc tcatcctctg cttcttccca gtcacgtaca aaagtacctt tcgcgcgctc
     7921 tctataaagt aaattctcac gaacgagttc atcaattgct tttcgaacgg taattctact
     7981 gacattgtat aactcacata aatcaagctc tggtggaatt ttatctccag tttgccaaac
     8041 ttctgtttgg attttttctc gtaaatcatc agctatttgc gcatagagcg gagatgcatc
     8101 gtacatttta tttaactttc tcaccatagt aagccttcct tctcaaattg tattattgtc
     8161 atcacaatga atcatagcat aagcttatcc aaaattccaa tataaaaagt agagctatta
     8221 agccctactt tttaaactat tctactgcaa ctcaatcgtt aaatcacctg ttttgaggcg
     8281 ttccttttta ataagaaacg gtctgacaat aagtgcaata acacctggca agacaactgc
     8341 taccaaaata aaagcagcaa gtgtgctgaa tccgtaattt gctattaaat aaagaggtgc
     8401 aacaaaggcg cataagccaa ggcctgcaac ttcacttgcg gcttgaatgt gaaataccat
     8461 cacaccaaga ggtccagcaa ttagtgttgt taatagtggt actaacatga ggctaggctt
     8521 tctaataata ttaggtgttt gtaatttagg tgtacagata agttgggcaa aaaatgcacc
     8581 ccagttatta tcccgataac ttaacaccgc gaatgacacg aattgaaccg agcaaccaat
     8641 caacgccgca gcacttgctg ttggatcaag ttgaagcgca atcgcgagcg cagcagaaga
     8701 agctgggcta agtatcagta atccaaacac aaaagcaata accatcgatg aaatcagcgg
     8761 cgaaccacca attaatgaac taattccaag acttacagaa gctaaaatcg gcgccataat
     8821 ctttgcaaat aaaataccgc ttagtccgcc agctaaaagt gaaacaccgg gaatcaaaat
     8881 catatcaaat ttcgtctttc cagtgactcg cttcccagtc caaactgcca caataacagc
     8941 caaaatagct ccgactggtt ctccgctagt aatagcaact ccgccaccag ctaacgtcgc
     9001 cactgcccca ccaccaataa cagcagaggc tgccgcactt atcgtcacaa gcgtattcgc
     9061 gtgcaagcac atcgcaatac caacaccaat tcccggaatt aacatcgttt taccaattgc
     9121 tccaaccgtt acaagaaatg aaatccctgt catctgccca attgtctgta aaagaagtcc
     9181 aattccaagc gttacaagaa ccgcattcgc aatccccata gaagccttat aggaacgatc
     9241 tataaaatat tctttcattg cttctccctt tctaaaatgt attctttctc attgtaatca
     9301 ctagttaatt aaaaagctag ttttatttac tggttttcct ttaaaaatgt taaaaaggtt
     9361 tcagcaattc gattttcaag tctttgtctg ttttttagta ccgaaaactt ccgcattaag
     9421 ctaccagcct cattaaacgt ctgcagtttt cctgatgtaa tttctgtttg aacaacacac
     9481 ttagaaataa cggtgtagcc cattccttca agaaccattt gtttgaccgc catattactc
     9541 caagcaacaa ctttttcagc aacattccag ccattggtac ttaatacatg atccaaatat
     9601 tcacgcgttc ctgagccttc ttctcgcgca atccaagttg ctccttgttc gatttcggta
     9661 agtgaaccgt ctgctcgacc aacgatacac atctcatcat ccgaaaaagc acttatctcc
     9721 aaatctttct tacttacctg gccttcaata agccctgtgt ccacttgaag aagttccact
     9781 ttgtcagcaa ttttcgcggt attttcaatg attagttcta ttgtaatatc cggataaagg
     9841 gcatgaaatt tcgcaatcac ttctggcaaa aaatactctc ctatcgtaaa actagcacca
     9901 attcgaagtc gaccttttaa atgatggtga tataaactta tttcatcttc cacttgttta
     9961 tatagacctt ctaattgctt ggcacggtga tataaaattt ctcctgttgc tgttaaaata
    10021 aactttttag cctgcctgta aataagctct gtttcataaa tctcttctaa tttctttaat
    10081 tgcaacgata cagcgggttg cgaaatgtgt aattcttcag ctgcttttgt aaaactttgc
    10141 aattctacta ctcggatata tgttctta
//
LOCUS       DASEAA010000092         9986 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.092, whole genome shotgun sequence.
ACCESSION   DASEAA010000092 DASEAA010000000
VERSION     DASEAA010000092.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9986
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.092"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            29..880
                     /locus_tag="U0342_001876"
     CDS             29..880
                     /locus_tag="U0342_001876"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MurR/RpiR family transcriptional regulator"
                     /protein_id="HEM2423220.1"
                     /translation="MNILIKIRELTNLTNSEKELANYILANPKKTLQCKPKELATAAF
                     VSAATIYRLINKLGLNGIGELKIEIASSLRETNEEKDLNYDYPILESDTPYQIMTNLN
                     QIYKGTIDETLNNADPEELVKIGEKLIQAKTIDVYAASANLFFAQNFKFQMQEIGVLV
                     NVPEEDYIQSLSAANSDENHIAIVVSYGGRSRTLQRVVKILSENNVDIILITSMQDNP
                     LVEFATHKIYMASAENHYNKVSSFSTRQSLLSIFDTLYSIYFNQNYEKNIQYKTTNYQ
                     KMNTELE"
     gene            999..1838
                     /locus_tag="U0342_001877"
     CDS             999..1838
                     /locus_tag="U0342_001877"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466221.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2423221.1"
                     /translation="MTTQAIILDIDGTLLNDDKKISPETKKALITAQQNGVKLILASG
                     RPTTGMHVYAEQLEMEKHHGLLVSYNGAKVVDCATSEELFNQALTVEEGKAVLEHMKQ
                     FEVKVMIDKEDYMYTNDVYDCYVPYRGEVINIVQYESRGGNFKLCEKDDLAAFLDYRL
                     NKILTAGDPAYMQENYQAMMAPFKDTLNCVFTADFYFEFTAQGIDKAKALDTVLTPMG
                     IHAENVIAFGDGHNDITMVEYAGTGIAMQNAVPELKAAASSVTLSNNEDGIAHVLNSL
                     IPS"
     gene            complement(1866..2312)
                     /locus_tag="U0342_001878"
     CDS             complement(1866..2312)
                     /locus_tag="U0342_001878"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX pyrophosphatase"
                     /protein_id="HEM2423222.1"
                     /translation="MRQPFQVLVIPFIKTEANYQFGVLHRTDADVWQFVAGGGEDEEA
                     ISETAKRESIEELNLGVKVKMYSLDSHASIPNFHFSFNKPYVVPEYCFAIDLTSCSYQ
                     VTLSLEHSELRWVSYESAVQLLEWDSNKTALYELNERLKNNDMKAI"
     gene            2428..3270
                     /locus_tag="U0342_001879"
     CDS             2428..3270
                     /locus_tag="U0342_001879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466222.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2423223.1"
                     /translation="MTLSFSDTYRLNNGIEMPRHGFGVYKLTDEARMRTALETAVDVG
                     YRLFDTASFYHNEKELGDFFASSGLKRDEFFVTTKMWNTEQGYDETLRAFEKSQKKLQ
                     LDKIDLYLVHWPKQDTFFDTWRAVEKLYDEGLVRAIGVSNFEAHHLDRLRTSANVLPV
                     VDQLETHPHFPNHLLHRYLEELHIVHQAWSPLGRGGVLQEQILIDLAEKHGKSPAQIV
                     LRWHLQNNISIIPKSETPSRIRENAAIYDFELSEADMRQVERLNTGERVSHAPDVMYV
                     RSEI"
     gene            complement(3316..3561)
                     /locus_tag="U0342_001880"
     CDS             complement(3316..3561)
                     /locus_tag="U0342_001880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466223.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YaaL family protein"
                     /protein_id="HEM2423224.1"
                     /translation="MESRSNKFGRKKNKKIGKLHKSYDAYLMELIEVTQEKWHKQKVL
                     MRKSFEYDPNLEYEEKKAEARYFYLFKEARTRQLKNK"
     gene            complement(3576..4172)
                     /gene="recR"
                     /locus_tag="U0342_001881"
     CDS             complement(3576..4172)
                     /gene="recR"
                     /locus_tag="U0342_001881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombination protein RecR"
                     /protein_id="HEM2423225.1"
                     /translation="MHYPEPITKLIDSFMKLPGIGPKSAARLAFYVLDMKEDDVLDFA
                     KALVDAKRNLSFCSVCGHITDKDPCYICADTSRDRSVICVVQESKDVIAMEKMRDFHG
                     LYHVLHGTISPMDGIGPEDINIPDLLKRLQDDTIEEVILATNPNVEGEATAMYISRLL
                     KPSGIKVTRIAHGLPVGGDLEYADEVTLSKAMEGRREV"
     gene            complement(4281..4598)
                     /locus_tag="U0342_001882"
     CDS             complement(4281..4598)
                     /locus_tag="U0342_001882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YbaB/EbfC family nucleoid-associated protein"
                     /protein_id="HEM2423226.1"
                     /translation="MRGMGNMQGMMKQMQKMQKEMAKAQADLEAQEFTGTAGGGMVTV
                     KATGKRVITDVVINEEVVDPEDIEMLQDLVLAATNDVLKQIEDTTSQTMGKFTQGLNI
                     PGM"
     gene            complement(4628..6367)
                     /gene="dnaX"
                     /locus_tag="U0342_001883"
     CDS             complement(4628..6367)
                     /gene="dnaX"
                     /locus_tag="U0342_001883"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit gamma/tau"
                     /protein_id="HEM2423227.1"
                     /translation="MAYQALYRIFRPQSFQDVVGQEHVTKTLKNAIVQNKTSHAYLFS
                     GPRGTGKTSAAKIFAKAINCEHGHDGEPCNECEICKGTTDGSIPDVLEIDAASNNGVE
                     EIRDIREKVKYAPTVAKYKVYIIDEVHMLSTGAFNALLKTLEEPPKHVIFILATTEPH
                     KLPLTIISRVQRFDFKRITTQDIIGRLKFILEEEKIPYDEKALMIVARAAEGGMRDAL
                     SLLDQVISYGSEEVAVEDALEITGSVAQNLLTKLVSAAFDGDAAEAISTLTALLAEGK
                     DPVRLVEDLLVFFRDVLLYQKAPNLEETLERALIDDDFVALAKRADSLKVYEFVKILN
                     TAQQQMRFSNHPGIYVEVALVQLTQAGKSVAGGGNVPADAASGSDVSDLKRQMEQMHQ
                     EIQTLKKQIASGAGAAPADKPTQNRGGSKKAINNGKQFKAPIGKINHVLGEAKKENLQ
                     LIRGCWGELLSMLMASQAALLNDAEPVAASQDTFVLKFKHEIHCQMAMDNPNFVETIT
                     SSIARLTQVNYTFIGIPEDQWADVRENFLHSHGSDGDAEDGANPEAKKPAEDPFVAEA
                     AKLVGEDLLEIKD"
     gene            complement(6616..7080)
                     /locus_tag="U0342_001884"
     CDS             complement(6616..7080)
                     /locus_tag="U0342_001884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466227.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3284 domain-containing protein"
                     /protein_id="HEM2423228.1"
                     /translation="MNVTQKLYISQKECFDTLVSSAIYDVKNATGKTLQVRKLEGYKY
                     QRTMSNGALATTKIVKVQPNELYQFETSSRVNTHTTTYTIKSTSETTCEVTYNELIET
                     EKALNKMNNIIVGFMFGFFRKKRVKNLLKSIELSVINESKQKQEKLAAKSEQ"
     gene            complement(7098..7280)
                     /locus_tag="U0342_001885"
     CDS             complement(7098..7280)
                     /locus_tag="U0342_001885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3188 domain-containing protein"
                     /protein_id="HEM2423229.1"
                     /translation="MKIVNALFLISIGLIIIMFSPSYGKDGMASVPLLVTGLAVVLIG
                     CVFIVLKIRKDKKEKN"
     gene            complement(7283..7504)
                     /locus_tag="U0342_001886"
     CDS             complement(7283..7504)
                     /locus_tag="U0342_001886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423230.1"
                     /translation="MIILNCPMKRDYITELLETYDKDGVTFKKIDEKGMKLTFETNIE
                     DEEKAAKIAKETIKATEIGSVLYFQVSVG"
     gene            complement(7639..9003)
                     /locus_tag="U0342_001887"
     CDS             complement(7639..9003)
                     /locus_tag="U0342_001887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2423231.1"
                     /translation="MNGLTAFLEKYFVPVAAKIGSQKHLVALRDAFISTMPITMAGSI
                     AVLLNAFFRDFPTDWGWTGFVEAMQPLIGINGYVYNGTLAIVSIIFAFSLGYNLSKAY
                     EVDRLAGGLVSLAAFVMNLTVTVSLDAVKAAIAASNANFDVATLPKEFAGIYGFFSLS
                     QVNGTGLFTAMIFGFISTIIYAKLMRRNIIIKMPDSVPPAVSKAFAAIIPALVALYVV
                     GIIDWAFFKITNMDVITWISKTIQEPLLSLSQGYGAVLLVTFLVQLLWFFGIHGPNVL
                     APVLESLWGTAQLQNISAAQEGAKLPFEWVRGSFDAYVWMGGSGGTLVLIIALLMFSK
                     RADARTVAKLSLAPGIFNINEPIMFGLPIVLNTIYLIPFLIAPMVMVTIAYFATTLGI
                     VGPVKIAVVWVMPPLLNSFLATGGDWMAPVISLINMVVAFLIWVPFVITANRVGVPEE
                     EMKA"
     gene            9444..9599
                     /locus_tag="U0342_001888"
     CDS             9444..9599
                     /locus_tag="U0342_001888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423232.1"
                     /translation="MAVKRDMPEESKNSKVVKKEHFSIVFPDDIKEPKNASEQKKQDV
                     EKKTDDN"
     gene            complement(9631..>9986)
                     /locus_tag="U0342_001889"
     CDS             complement(9631..>9986)
                     /locus_tag="U0342_001889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466232.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423233.1"
                     /translation="INEPSTNKYYAGLIDYSVADNAYVTQKDVYITNNESYATYDFFD
                     KNGKKIYTYNPEETSNDDYIVRIKPTILQGYEKSDIGSYDDYLNITALFKDKLGMDVN
                     VRIDEDKEMVIFSIK"
BASE COUNT         3099 a         2120 c         1653 g         3114 t
ORIGIN      
        1 ccattctaaa aagttaggat ttgaaacgat gaatatttta attaaaatac gcgaactaac
       61 caatttaacc aatagtgaaa aagaacttgc gaattatatt ttagcgaacc cgaaaaaaac
      121 attacagtgc aaaccaaaag aattagctac cgctgccttt gtctccgctg caactatcta
      181 ccgtttaatt aacaaactag ggctgaacgg aatcggtgaa ctaaaaatcg aaattgcctc
      241 gagtctccgt gaaacaaatg aagaaaaaga tttaaattac gattatccta ttttggaatc
      301 cgatacaccc taccaaataa tgaccaacct aaaccaaata tacaaaggaa ccattgatga
      361 aacattaaac aacgccgatc cagaagaact tgtcaaaatt ggtgaaaaat taattcaagc
      421 gaaaaccatt gatgtttatg cagcttccgc caatttattt tttgctcaaa acttcaaatt
      481 ccaaatgcag gaaatcggtg ttttagtcaa tgttcctgaa gaagattata tccaaagctt
      541 atcggccgcc aacagcgatg aaaaccatat tgccatcgtc gtttcttacg gcggtcggag
      601 tcggacgctt caaagagtcg tcaaaatctt gtccgaaaac aatgtcgata ttattttaat
      661 tacatctatg caagacaatc ctttagtcga atttgccaca cacaaaatct acatggcatc
      721 cgctgagaac cattacaaca aagtctcttc gttctcaacg cgccaatctt tactaagcat
      781 tttcgatacg ctttattcca tttattttaa tcaaaattac gaaaaaaaca ttcaatacaa
      841 aacgactaat taccaaaaaa tgaacaccga attggaatga tttttcaaaa acacagccat
      901 tttcctttcg aattgaaaaa aagctttcaa tatgcgccac atctgatttt ttcttaattt
      961 ctagtgatac aataaagaaa aaaaggagct aaacttacat gacaacccaa gcgattattt
     1021 tagatattga tggcacttta ttgaacgacg acaaaaaaat ctcaccagaa acaaaaaaag
     1081 cactcatcac cgcgcaacag aatggtgtta aacttattct cgcatctggt agaccaacca
     1141 caggaatgca cgtatatgcg gaacaattag aaatggaaaa gcatcacggt ttgctcgttt
     1201 catacaatgg cgctaaagta gttgattgcg cgacaagtga agaattattc aaccaagcac
     1261 ttactgttga agaaggaaaa gccgttttag aacacatgaa acaatttgaa gtgaaagtaa
     1321 tgattgataa agaggattat atgtacacga atgatgtata cgactgctac gtaccttacc
     1381 gcggcgaagt aataaatatt gttcagtacg aatctcgcgg tgggaatttc aaactctgtg
     1441 aaaaagatga tttagccgca tttttagatt atcgtctaaa taaaattctc acagctggcg
     1501 acccggccta tatgcaagaa aattatcaag caatgatggc ccctttcaaa gatacactta
     1561 attgtgtctt cacagctgat ttttactttg aattcacagc tcagggcatt gataaagcca
     1621 aagcacttga taccgtttta acaccgatgg gcattcacgc tgaaaatgtt atcgcattcg
     1681 gagatggaca taatgatatt accatggtcg aatatgcagg aacaggaatc gctatgcaaa
     1741 atgccgtccc tgaattaaaa gccgcagcaa gctctgttac attatccaat aatgaagacg
     1801 gcattgcgca cgtgctaaac agtttaatcc cgagttaaga aaaaaggctg agattcagcc
     1861 tttttttata ttgccttcat atcattgttt ttcaaccgtt catttagttc ataaagcgcc
     1921 gttttattac tatcccactc caataactga accgcagact cataagaaac ccagcgcaac
     1981 tcgctatgct ctaaagataa tgtaacctga tatgaacaac tcgttaaatc aatggcaaaa
     2041 caatattctg gaacaacata tggtttgtta aatgagaaat gaaaattagg gatggatgca
     2101 tgtgaatcca agctatacat tttaaccttg actcccaaat tcaactcttc tatactttca
     2161 cgtttagcag tctctgaaat agcctcttca tcttctcctc caccagctac aaactgccaa
     2221 acatctgcat ccgttctatg taaaacacca aactgataat ttgcttccgt tttaataaac
     2281 ggtataacta aaacttgaaa aggttgtctc attcactcac gtccttttgg aatttataaa
     2341 aaaatcgcat ttctatcctt cattctacag aaattctcca ttttctggta tgcttaagtt
     2401 aataaactaa agtaggaggt aaatgaaatg acactttctt tctcggatac atacagactg
     2461 aacaatggaa ttgaaatgcc tagacatggt tttggggtct acaagctaac ggatgaagcg
     2521 cgtatgcgta ctgcgctgga aaccgcggtg gatgtcgggt atcgcttgtt tgatacggct
     2581 tcattttacc ataatgaaaa agagcttgga gacttttttg cgtcaagtgg cttgaaaaga
     2641 gatgaatttt tcgtcacaac aaaaatgtgg aatacagaac aaggttacga tgaaacgctt
     2701 cgagcttttg aaaaatcgca gaaaaaacta caattggaca aaattgattt atatttagtc
     2761 cattggccaa aacaagatac tttttttgac acttggcgcg ctgtggaaaa attatatgac
     2821 gagggacttg ttcgcgcaat tggtgtaagt aactttgaag cgcatcatct ggaccgcctg
     2881 cgtacaagtg ccaatgtgct tccagtagta gatcaactcg aaacgcatcc gcactttccg
     2941 aatcatcttt tacaccgcta tttagaagag ctacatatcg ttcaccaagc ttggagccca
     3001 cttggccgtg gtggggtttt acaagagcaa atccttattg acctagcgga aaaacacggg
     3061 aaatcacctg ctcaaatcgt ccttcgatgg cacttacaaa ataatatctc tatcattcca
     3121 aaatcagaaa caccttcaag aattagagaa aatgcagcta tttatgattt tgaattatca
     3181 gaagcagata tgcgccaagt cgagcgttta aatactggtg aacgtgtgag ccacgcacca
     3241 gacgtgatgt atgtaagatc agaaatttag cctaaaataa aaatctacta aaccaatttg
     3301 gcttagtaga tttttttatt tgttttttaa ttgtcttgta cgtgcttctt tgaaaaggta
     3361 aaaatagcga gcttctgctt tcttttcctc atattctaaa ttaggatcat attcaaaact
     3421 tttacgcatt agaacttttt gtttgtgcca cttttcttgc gtgacttcaa tcaattccat
     3481 cagataagca tcataggatt tgtgtagttt accaatcttc ttgtttttct tccgaccaaa
     3541 cttattgctt ctggattcca ttttatcacc tctgattata cttctcttcg tccttccatt
     3601 gcttttgaga gcgtcacttc atccgcatat tccaagtctc cgccaactgg aaggccatgc
     3661 gctattctag ttacttttat gcctgaaggt tttaataagc gcgaaatata catcgccgtg
     3721 gcttctcctt caacattagg gttggttgct aaaataactt cttcaatcgt gtcatcttgc
     3781 aaacgtttca gcaaatcagg aatgttaata tcttctggtc caattccatc cattggcgaa
     3841 attgttccat gaagtacatg gtataagcca tgaaaatcac gcattttttc cattgcaatg
     3901 acatctttgg attcttgtac tacacagata acacttcgat cgcgtgacgt atcagcgcaa
     3961 atataacatg gatccttatc tgtaatgtga ccacaaacgg aacaaaagct taggtttcgc
     4021 ttcgcatcaa caagggcttt tgcaaaatct agcacatcgt cttctttcat atctaacaca
     4081 taaaaagcta gtcgagctgc cgattttggt ccaattcctg gtaatttcat aaaactatct
     4141 attaatttcg ttatcggctc aggataatgc ataattcgtc ttcctctcac cttcaaaata
     4201 caaatgtttc acgtggaaca ttctattgaa aaatagttga gactcttgta aataagccaa
     4261 gagtctcaaa ccaaacaata ttacattcca ggaatattta atccttgtgt gaatttaccc
     4321 attgtttgtg aagttgtatc ttcaatttgt tttaatacat catttgttgc tgcaagtact
     4381 aaatcttgta gcatttcgat atcttccgga tcaactactt cttcatttat aacaacatct
     4441 gtaatgacgc gtttaccagt agcttttact gtaaccattc caccaccagc agttccagtg
     4501 aactcttgag cttctaaatc agcttgagct ttcgccattt ccttttgcat tttttgcatt
     4561 tgtttcatca taccttgcat atttcccatt ccacgcatga ataatctcct ctttcttcta
     4621 ttgtttttta atctttaatt tcaagcaaat cttcaccaac gagttttgcg gcttctgcaa
     4681 caaaaggatc ttccgctggt tttttagctt ctggatttgc gccgtcctcc gcatcgccgt
     4741 cgctaccatg actatgcagg aaattctctc ttacgtcagc ccattgatct tctgggatac
     4801 caataaaagt ataatttact tgagtcagtc gggcaatact cgatgtgatg gtttcaacaa
     4861 agttcggatt atccatcgcc atttgacagt gaatctcatg cttaaatttt aacacaaaag
     4921 tgtcctgaga tgcagccaca ggttctgcgt catttaaaag tgctgcttga gatgccatca
     4981 acattgataa taactcgccc caacaaccac ggattaactg taaattctct ttcttagcct
     5041 cacctagcac atggttgatt ttaccaatag gcgctttaaa ttgcttgccg ttgttgattg
     5101 cttttttaga accaccgcga ttttgggttg gtttatcggc tggcgctgct ccagccccgc
     5161 tggcaatttg ttttttcagc gtttgtatct cttgatgcat ttgctccatt tgacgtttta
     5221 agtcagagac atcacttcca gaagctgcat ctgctggcac attcccgcca cctgcaactg
     5281 atttacccgc ctgagttaac tgaacaagcg ccacttccac ataaataccc ggatgattcg
     5341 agaaacgcat ttgttgctga gctgtattta aaattttcac gaactcatac actttaagtg
     5401 aatctgctcg ttttgccaaa gcaacaaaat catcatcaat caaagctcgt tccagtgttt
     5461 cttccagatt cggcgctttt tgatacagca gcacatctct aaagaatacg agtaaatctt
     5521 ccactaagcg aaccgggtct ttcccttctg ctagcagtgc tgtcagcgtt gaaatcgctt
     5581 ctgctgcatc gccgtcaaac gctgcactta ctagttttgt aaggagattt tgagcaaccg
     5641 aacctgttat ttctagcgcg tcttccactg caacttcttc tgacccgtaa gatataactt
     5701 gatcgagcaa actaagcgca tcacgcattc caccttcagc cgcacgcgca acaatcatca
     5761 acgctttttc atcataaggg attttttctt cttccaaaat aaatttcaaa cgaccaataa
     5821 tatcttgtgt cgtgattcgt ttaaaatcaa accgttgtac ccgcgaaata atcgttagcg
     5881 gtaacttatg cggttctgtt gttgccaaaa taaaaatgac atgtttcggc ggttcttcca
     5941 gcgtttttag tagcgcatta aacgctcccg tcgacaacat atgcacttca tcgataatat
     6001 atactttata tttcgccaca gttggcgcat attttacttt ttcccggata tctcgaattt
     6061 cttcaacccc gttattactg gcagcatcga tttcaagaac atctggtata gaaccgtccg
     6121 tcgtaccttt acaaatctca cattcattgc aaggctcccc gtcatggccg tgttcacagt
     6181 taatcgcctt cgcaaaaatt ttcgccgcac tagtcttccc cgtcccccga ggcccagaaa
     6241 ataaataagc gtgcgaagtt ttattttgca caatggcatt tttaagcgtt ttcgtcacat
     6301 gttcctgtcc aacaacatcc tgaaacgact gcggccgaaa aatccgatac aaagcctgat
     6361 acgccatctg ccactctcct tcacctaaaa ccattttagt agttttatta taacgtattg
     6421 ttgaagaagt ttcaaaacgt tgtttgtttt gatctacttc ttcaatataa atctgagcaa
     6481 agcgatgatt taatccttac cagaagtttc aaaacgtcct gagccgggct agcttcaaaa
     6541 accaccacca ccaaaaatca aaaatcaaac cccaaaaaaa gaaccagacc cccgaaaaag
     6601 cccgattcca aactcttact gttcactttt agcagccaat ttctcctgct tctgcttact
     6661 ctcattaata accgaaagct caatcgattt cagcaagttt tttacacgtt ttttacggaa
     6721 gaagccaaac ataaaaccaa caataatatt attcatttta tttaacgctt tttccgtttc
     6781 gattaattcg ttataggtca cttcgcatgt agtttcgcta gtggatttta tcgtatacgt
     6841 cgtcgtatga gtgttcacac ggctgctcgt ttcgaattga taaagttcgt taggttgcac
     6901 tttaacaatt tttgttgtag caagtgcgcc attagacatc gtacgttgat atttatatcc
     6961 ttctaacttt cgtacttgaa gcgtcttacc agtggcattt tttacatcat agattgctga
     7021 gctaactagt gtatcaaagc attctttttg ggatatatat aatttctgtg tgacattcac
     7081 tttttaatcg actccttcta attcttttct ttcttatctt tacggatttt tagcacgatg
     7141 aaaacacagc cgattaaaac aaccgcaagt cctgtaacta gaagaggtac actagccatc
     7201 ccatcttttc cataagaagg actaaacata ataataataa gacctatact aataagaaat
     7261 agtgcattaa caattttcat tttcaaccca cactaacttg gaaatagagt acagagccta
     7321 tttcagttgc ttttattgtt tctttggcga tttttgctgc cttttcttcg tcttcaatat
     7381 ttgtttcaaa agtaagtttc ataccttttt cgtctatttt tttaaaagtt acaccgtctt
     7441 tatcatatgt ttcaagtaat tcagtaatgt aatctcgctt cattggacaa ttaagaataa
     7501 tcatttaaaa aaacctcctt ttctatagtt taacgttatc tttcgcttct tgcaatgaat
     7561 aaaaatggtg caggaattcc tacatgatat actggctagg cacaatttag ctgcacctag
     7621 ccagaaactt attattttct aagctttcat ctcttcttct ggtacaccaa cgcgatttgc
     7681 ggtaataaca aatggtaccc aaatcaagaa cgcgacgacc atatttatga gtgaaattac
     7741 tggtgccatc caatctcccc cggttgctaa gaaggaattc agaagtggcg gcattaccca
     7801 aactactgca attttaactg ggccgacaat gccaagtgtt gttgcaaagt aagcgattgt
     7861 taccattacc attggcgcga taaggaatgg tattaagtaa attgtattta atacgatcgg
     7921 taaaccaaac atgattggtt cgttaatatt aaatatacct ggtgcaagag acaatttcgc
     7981 aactgttcgt gcatccgctc gtttcgagaa cattagtaat gcgataatca gtactagcgt
     8041 accgcctgat ccacccatcc atacatacgc atcgaaagaa ccacgtaccc attcgaatgg
     8101 taatttagcg ccttcttgtg ccgcactaat gttttgtagt tgtgctgtac cccaaagtga
     8161 ttctagaacc ggagcaagta cgttcggacc atgaatcccg aagaaccata gtagttgtac
     8221 taagaaagta actagtaaaa cagctccgta cccttgcgaa agtgataata acggctcttg
     8281 aattgttttg gaaatccaag taataacgtc catatttgtg attttgaaga atgcccagtc
     8341 aataatacca acaacataaa gtgcaactaa cgcaggaata atcgccgcga aagctttact
     8401 tacagccggt ggaacagaat ctggcatttt gataataata tttctgcgca ttaatttcgc
     8461 ataaataata gttgatataa aaccgaaaat cattgcggta aacaagccgg taccatttac
     8521 ttggcttagg ctaaagaatc cgtaaattcc agcaaattct tttggtaaag tagctacatc
     8581 gaaatttgca ttagaagccg caatcgcagc ttttactgca tctaagctta cagtaacagt
     8641 taagttcata acaaaagcag caagagaaac tagcccccca gctaatcgat ccacttcata
     8701 tgcttttgat aaattatacc ctagtgaaaa ggcaaaaata attgaaacaa ttgctaatgt
     8761 cccattgtat acatatccat taatcccgat aagtggttgc attgcttcca caaatcctgt
     8821 ccatccccag tcagttggaa aatccctaaa aaacgcattt aaaagtactg caattgaccc
     8881 agccatagtg attggcattg ttgaaataaa agcatcacgt aatgcaacta gatgtttttg
     8941 tgaaccaatt ttcgctgcta ctggcacaaa atacttttcc aaaaatgctg ttaatccatt
     9001 catattttat cctcccgtaa acctttttat ttaacactca tcttttaaac aaaatataat
     9061 ttctatgtat aaactccctt taagtttatc agctatatct gtttactttg tcctagtaat
     9121 ccccattact aaaacaaacc agatggaatc tttgcatgac ctcgtgaaat tttgggagcc
     9181 ctcctctccg cttcatgata aggcttacat ttagattcac cttaatctat tgcaatttcc
     9241 gtgccaagta ctaaatttgg aaaaaacatc ctttaatctc ttgaaagcct tgtctttctt
     9301 gcctttaaac ttgtattaca cacatacaga aaaaaactgt gtaagtaagc gttaacatta
     9361 cacagtttac taatttatcc attcttcttt ctgtgttata atgagcataa gctaagtaat
     9421 accaacaatt cgaggtgata aatatggcag tcaaacgaga tatgccggaa gagtcgaaaa
     9481 atagtaaagt tgtgaaaaaa gagcattttt cgattgtgtt tcctgatgat ataaaagaac
     9541 caaaaaatgc gagtgaacaa aaaaagcaag atgttgaaaa gaaaacagat gataattaat
     9601 aaaaaagagc atccgcgggg atgctctttt ttatttaata gagaagataa ccatttcttt
     9661 atcctcatca attcggacat ttacgtccat gcctaattta tctttaaaaa gtgccgtaat
     9721 atttagatag tcatcatagc taccgatatc acttttttcg tatccttgta gaattgtcgg
     9781 cttgatacgc acaatgtaat catcatttga tgtttcttca ggattataag tatagatttt
     9841 cttaccattc ttatcaaaaa agtcatatgt tgcataggat tcattgtttg tgatatacac
     9901 atctttttgt gtaacataag cattatcggc cacgctgtag tcaatcaaac ctgcgtaata
     9961 tttattggta gatggttcat taattt
//
LOCUS       DASEAA010000093         9961 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.093, whole genome shotgun sequence.
ACCESSION   DASEAA010000093 DASEAA010000000
VERSION     DASEAA010000093.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9961
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.093"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            129..443
                     /locus_tag="U0342_001890"
     CDS             129..443
                     /locus_tag="U0342_001890"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423234.1"
                     /translation="MRAILIGVLIILLIAMILIVLLPAILATIGAVLGFWSLKKLLEA
                     RSVGEKVIYGILIGVGALIILANLKGILVVVIIGAIIYFLTRNKNKPRKNDDVFDYPY
                     NK"
     gene            459..1304
                     /locus_tag="U0342_001891"
     CDS             459..1304
                     /locus_tag="U0342_001891"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PspA/IM30 family protein"
                     /protein_id="HEM2423235.1"
                     /translation="MANLFEKMKQWNKEVSEKIEKREEKRRNSVSYYMDKTKQEMKDA
                     ERMVEKQRELKSLFYKEYKEMEVYVEKRRHQAEIAKEAGETKLANFALEEVAQYEEQL
                     EATKAHYDQASEQLEKLELRMHEMRLKWKNLKTQHLAEMAEKNATETSEKMDKVIHDM
                     SWGSVSDYHEAQKQRDLAEEAEKKADMSKELSQSFDDLMDELEKKTKKSKEIIKDKAQ
                     NFTTMVDEIIEREKQNFKKPEKASMEDQLNELEKEAAKEKPKEEKEVLIPELEKKEEE
                     NETDK"
     gene            1493..2626
                     /gene="nagA"
                     /locus_tag="U0342_001892"
     CDS             1493..2626
                     /gene="nagA"
                     /locus_tag="U0342_001892"
                     /EC_number="3.5.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylglucosamine-6-phosphate deacetylase"
                     /protein_id="HEM2423236.1"
                     /translation="MTNKVITNATIYTGKGVLENAFVRFDKQILEVGSMADFQADKAE
                     EVIDAKGQKLVPGFIDVHSHGGYSFDAMDADPEALRKQVNGMLNEGITTYFPTTMTQS
                     HENIEKALKVINEVAQTEPVIGGIHLEGPFVSKVFKGAQPEEYIQAPDLELFKKWFDI
                     SGGLIKLVTYAPEHDTSADFENLCFELGVVPSIGHSNDVREHLKTSKATHATHLYNAC
                     HRMTHREPGVPGHVLLERGINAELIVDGIHVHPDMVKLAYQMKGPEHLCIITDSMRAK
                     GMPEGKSELGGQTVIVKDKQARLEDGTLAGSVLTYDDGFRNMIKFTGCSVEEAVLMSS
                     GNQAREFNLTQKGAIEAGKDADFNLLDEDLHITATYSFGKKHS"
     gene            2642..3346
                     /locus_tag="U0342_001893"
     CDS             2642..3346
                     /locus_tag="U0342_001893"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464482.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosamine-6-phosphate deaminase"
                     /protein_id="HEM2423237.1"
                     /translation="MQLITTENKLAGSKKALEIIEKGITSGEVNTLGLATGSTPETLY
                     AELVKSDVDTKNVTTTNLDEYVGLAANDPNSYHYYMNELLFSKKAFKESFLPNGEATD
                     AEAECARYEEILSEHPIDIQVLGIGTNGHIGFNEPGTPFDSLTHKVVLTDSTREANKR
                     FFEREEDVPTHAYSMGIKSIMNAKKIILLAFGENKAQAIKETIKGPVDVNCPASVLQN
                     HPDVTVILDNEAASLL"
     gene            3362..4084
                     /locus_tag="U0342_001894"
     CDS             3362..4084
                     /locus_tag="U0342_001894"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464483.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2423238.1"
                     /translation="MIDKQSGIPIYIQIQSEIKKKMEDGVWKVGTSIPAERQLAEMFH
                     VSRMTVRQAIQGLVDDNILQRRVGAGTFIAEKKLTERLEAVTSFTNLMLQEGKVPSTR
                     IVSYGIRPASTQEQEALQLPENSNVMKIERIRYGDRVPILYEVAAIPEKIASLLTKED
                     IMDSLYKAIELKLGQPIGEAEQIMEASLVSEKIAPYLDVKLGSPVMKLRQITTLEDGR
                     PFEFTRSQYVGSRFQFVARIKQ"
     gene            4204..5259
                     /locus_tag="U0342_001895"
     CDS             4204..5259
                     /locus_tag="U0342_001895"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM2423239.1"
                     /translation="MSWMIILICFGASVLLTPLIRKIALYFDITDKPDQRRINIKPIP
                     SLGGLAMFISFTIGMFLLPIENEFLWPLLIAAFVMVLTGLLDDIMEFKARYKLIGQVT
                     AAFIIVFWGNISIDFINLPFGGEIHFGVLSIPLTIIWIVAITNAINLIDGLDGLAAGV
                     STIALLTILGMAFIMGDALVIMIASVLIAGTLGFLPYNFNPAKIFMGDTGALFLGFII
                     SVLSVMGFKNVTFISLIVPILILGVPISDTLFAIIRRMVTKQPIAMADKSHLHHCLLR
                     LGFTHRQTVILIYAIAALFSLFAFIFTMSTLWGSMILIGVLLILIEVLIETLGLVGST
                     YRPLLNLFKLTKEEKID"
     gene            5373..6281
                     /locus_tag="U0342_001896"
     CDS             5373..6281
                     /locus_tag="U0342_001896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM2423240.1"
                     /translation="MEIIATADSMKQAEQLLRAGVDRLYVGNSQFGLRLPHSFSVEEL
                     REIVHLAHQEGKKVTVAVNSLMHNEHMEELPGFLEHLADMKVDAVTCGDPGAIMLLSE
                     MAQPIPFIYDAQTFVTSAEQISFWEKQGAIGAVLARELTEGEIKAIASSLTIPVEVLV
                     YGPTCIHQSKRKLVTNYERIVELEDDTSKERGLYLREPNDETSQLPIYEDESGTHIFA
                     SEDVSLVPYLADLYEAGLKTWKLDGVLAESENFVQIASLLVEAKEAVMKGQFVAEYFV
                     NKLTELQPPTRKLDAGFYLKNPDDVK"
     gene            6296..7522
                     /locus_tag="U0342_001897"
     CDS             6296..7522
                     /locus_tag="U0342_001897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464486.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="U32 family peptidase"
                     /protein_id="HEM2423241.1"
                     /translation="MSKILKKPEVLAPAGNLEKLKIAIRYGADAVYIGGQAFGLRSRA
                     GNFSFEEMKEGIAFAHERNAKVYVAANMVAHAGDTEGAGEFFRTLRDIGIDAVIVSDP
                     ALISICFQDAPGLPVHLSTQASATNYKTLEFWKKQGLERVVLAREVSMQEIQEIGEKT
                     DVEMEAFIHGAMCISYSGRCTLSNHMANRDANRGGCAQSCRWKYDLFEIDNGVSKNLV
                     DTDEEPFSMSAVDLSMIKYIPDMVNAGVDSLKIEGRMKSIHYVSTVASVYRRAVDAYC
                     ADPENYVFDPAWEEELWKVAQRELSTGFFYKEPTEDEQLFGKTRKIPQYAFAAQVLEY
                     DEKTKIATLQQRNNFGVGEEIEFYGPGDTGFKQIVEVLWNEDGVEIDRAPNAMMTIKM
                     PVDKPVKPFYFMRKKK"
     gene            7606..8163
                     /locus_tag="U0342_001898"
     CDS             7606..8163
                     /locus_tag="U0342_001898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464487.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LemA family protein"
                     /protein_id="HEM2423242.1"
                     /translation="MIGWIIAIAVVVILVLIYFGLYNSLVKYRNRVDETWAQIDVQLK
                     RRFDLIPNLVETVKGYAKHEKETLTQVIEARNKMMEVPADNRQGQIEADNMLSGALKS
                     IFALGEAYPDLKANTSFIELQHELTTTENKVAYSRQLYNTTVMTYNTKVQSVPTNIVA
                     KLHNFTERDMLSIPEVERVAPKVEF"
     gene            8186..9100
                     /gene="htpX"
                     /locus_tag="U0342_001899"
     CDS             8186..9100
                     /gene="htpX"
                     /locus_tag="U0342_001899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464488.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloprotease HtpX"
                     /protein_id="HEM2423243.1"
                     /translation="MLFEQIAANKRKTIFIILGFFIFVLMVGAAIGIIVWNNYLNGLI
                     LAAVIGAFYILIMVMSSSSVVMAMNHAKEVTSKDQAPVLWDTVESMAMVAGIPMPKVY
                     IVEDASPNAFATGISPEKGAVAVTRGLLNKLERYELEGVIAHEISHIRNYDIRLSTIA
                     IALVAVIAILSDLAMRMIFWGSLTGGRNNRKSDNNNSGGAQAIIYIVALIFVILAPII
                     ATAIQFALSRNREYLADASAVELTRNPDGLIQALQKISGDSKKMEEVSASSESIYFAS
                     PLKSKKNKPGLFDSHPPISSRIERLENM"
     gene            complement(9139..9957)
                     /gene="yjbH"
                     /locus_tag="U0342_001900"
     CDS             complement(9139..9957)
                     /gene="yjbH"
                     /locus_tag="U0342_001900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protease adaptor protein YjbH"
                     /protein_id="HEM2423244.1"
                     /translation="MINQNLYYQSVANSKPIEIYLFFDPACDDCWNIEANMLRLQMEY
                     GNYFKLRYVLHNNLQTFVCKQKRAGNSNLSLKEQQIGAHLSYISCLAVKAAELQGKKQ
                     GITFLRKIQAAYFLENKDIASEEVLYDIAVSTGLDLSEFKKDLASTVAKRAYIGDQKV
                     AQEMEIHENPTVVFFNKNIEDAGLKLSGLHRYEVYVHVLSELLNDAPQPEERPQMEEY
                     LAKVKVTSSATMADFYGVSEQQIERQMKKWRLQQKVELIDAPDGQAHWKYIGNL"
BASE COUNT         3319 a         1637 c         2091 g         2914 t
ORIGIN      
        1 caataggact caagttgtag gtgaatttcc ttctacagcg ggttattata cttgatagat
       61 agggttatga taggtacagt aataaaagaa aatatatcag ctacatttgg aagttaggag
      121 gtaggcgtat gagagcaata ttgattggcg tattaataat tttactaatt gcgatgatac
      181 ttatagtttt attgccagcg atactagcaa caattggtgc agtgctcggc ttttggtcac
      241 ttaagaagct acttgaagca aggtccgtag gtgaaaaagt tatttatggt attctaattg
      301 gtgttggtgc cttaataatt ctagctaact taaaaggaat tctggttgtt gtaattatcg
      361 gagcaatcat ttacttccta actagaaata aaaataaacc aagaaaaaat gatgacgtat
      421 tcgactaccc atacaataaa taattggagg agaaaaaaat ggcaaacctt tttgaaaaaa
      481 tgaaacaatg gaataaagaa gttagtgaaa aaatcgagaa acgtgaagaa aaacgtcgca
      541 attcagtaag ttactatatg gataaaacaa aacaagaaat gaaagacgca gaacgcatgg
      601 tagaaaaaca acgcgaactg aaatctcttt tctacaagga atataaagaa atggaagttt
      661 atgttgaaaa acgtcgtcac caagcagaaa tcgccaaaga agctggtgaa acaaaactag
      721 ctaatttcgc tttagaagaa gtggctcaat atgaagaaca attagaagct acaaaagcac
      781 attacgatca agcgtccgaa cagcttgaaa aattagaact acgtatgcac gaaatgcgct
      841 taaaatggaa aaatcttaaa acccaacatt tagctgaaat ggctgaaaaa aatgcaacag
      901 aaacttccga aaaaatggac aaagttatcc atgacatgag ctggggtagt gttagtgact
      961 atcatgaagc acaaaaacaa cgcgatttag cggaagaagc agaaaagaaa gcggatatga
     1021 gcaaagaact ttctcaatcc tttgatgatc taatggacga actagaaaag aaaacaaaga
     1081 aaagcaaaga aatcatcaaa gataaagcgc aaaactttac aactatggta gatgaaatta
     1141 ttgaacgcga aaaacaaaat ttcaaaaaac cagaaaaagc ttcgatggaa gatcaattaa
     1201 atgaacttga aaaagaagct gcaaaagaaa aaccaaaaga agaaaaagaa gtattaattc
     1261 cagaattaga gaaaaaagaa gaagaaaacg aaacagataa ataaaagtaa ttagcgcaga
     1321 ataatcattc tgcgcttttt tataacaaaa cgctatgggc cttctaaata tgctcgtagc
     1381 ttttttggtt atattacttt ttttcgggta aataggaaaa gataagttgc attttaatag
     1441 atacgtgcta taataattgg tatagaccga tttaacaagg aggcaatatg taatgactaa
     1501 taaagtaatt actaacgcta caatttatac tggtaaaggt gttctagaaa atgctttcgt
     1561 acgttttgac aaacaaattt tagaggttgg ctcgatggct gatttccaag cggacaaagc
     1621 agaagaagta atcgatgcca aaggacaaaa acttgttcca ggtttcattg atgttcattc
     1681 ccacggtggt tatagttttg acgcaatgga tgcagatcca gaagcactta gaaaacaagt
     1741 gaacggaatg ttaaatgaag gaatcactac ttacttccca acaacgatga cacaatcaca
     1801 tgaaaatatt gaaaaagcat taaaagtgat caatgaggtt gctcaaacag aacctgttat
     1861 tggtggaatt catttggaag gtccatttgt ttctaaagtc tttaaaggcg cacaaccaga
     1921 agaatatatt caagcacctg acttggaact tttcaaaaag tggtttgata tttctggtgg
     1981 tttaattaaa ttagtaacat atgcaccaga acatgatact tcagctgatt ttgaaaattt
     2041 gtgttttgaa ctaggggttg ttccgagtat tggtcactct aatgatgttc gtgagcactt
     2101 gaaaacaagt aaagcgacac acgcgacaca tttatataat gcttgtcacc gtatgacgca
     2161 ccgtgagcca ggcgttccag gtcatgtttt actagaacgc ggtattaatg cagaactaat
     2221 cgttgatggc attcacgttc atcctgatat ggtgaaatta gcttatcaaa tgaaagggcc
     2281 agaacattta tgcattatca ctgactccat gcgagcaaaa ggtatgccag aagggaaatc
     2341 tgaacttggc ggccaaactg ttatcgtgaa agataaacaa gctcgtttag aagatggaac
     2401 tttagctgga agtgtactca cttatgacga tggcttccgc aacatgatta aatttactgg
     2461 atgctcggta gaagaggcag ttcttatgtc ttctggaaac caagcacgcg aatttaattt
     2521 aacacaaaaa ggtgcaatcg aggctggtaa ggatgcagat ttcaacttac ttgacgaaga
     2581 tttacacatt acagcaactt attcattcgg aaaaaaacat tcttgagagg aagataataa
     2641 aatgcaactt atcacaacag aaaataaatt agcaggatcc aaaaaagcat tagaaatcat
     2701 tgaaaaagga attacatcag gtgaagtaaa cacacttggc ctagcaactg gtagcacacc
     2761 agaaacactt tatgcagagc ttgtaaaaag cgatgttgac acaaaaaatg tcacaacaac
     2821 gaacttagat gaatatgtag gtcttgcggc aaacgaccca aacagttatc attactatat
     2881 gaacgaattg ttattctcta aaaaagcatt taaagaaagt ttcttaccta acggagaagc
     2941 gacggatgca gaagcagaat gcgcacgtta tgaagaaatt ttatctgagc acccaattga
     3001 tattcaagtg cttggaattg gaacaaacgg ccatattggt tttaacgaac caggaactcc
     3061 ttttgattcg ttaacacata aagttgtttt aacagattcc actcgtgaag ctaataaacg
     3121 ctttttcgaa agagaagaag atgttccaac acatgcttat tctatgggaa ttaaatccat
     3181 catgaatgcg aagaaaatta tcctacttgc ttttggtgaa aacaaagcac aagcaatcaa
     3241 agaaactatt aaaggacctg tagatgtgaa ttgtcctgct tctgtacttc aaaatcatcc
     3301 agatgttact gtgattcttg acaacgaggc ggcgtcactt ctataagaag agggcgggaa
     3361 aatgatcgat aaacaatcag gaataccgat ttacattcag attcaaagtg aaattaaaaa
     3421 gaaaatggaa gatggtgttt ggaaagttgg cacttctatt ccagctgaac gtcaacttgc
     3481 tgaaatgttt cacgttagcc gaatgacggt aagacaagcc attcaaggcc tcgttgatga
     3541 taacattttg caaagacgtg ttggtgccgg gacctttatt gcggaaaaga aactaaccga
     3601 acgacttgaa gctgttacga gttttacgaa tttgatgtta caagagggga aagttccttc
     3661 gacgcgaatc gtatcgtatg gcattcgtcc ggcaagtacg caagaacaag aagcgttgca
     3721 actgccagaa aacagcaatg taatgaaaat tgaacggatt cgttacggcg accgtgtgcc
     3781 aattctttat gaagttgctg ccattccaga aaaaattgct tcactgctta caaaggaaga
     3841 cattatggat tccctttata aagcgattga attaaaactt ggtcaaccaa ttggagaagc
     3901 ggaacaaatc atggaagctt ctttagtatc agaaaaaatt gcgccatatc ttgatgtgaa
     3961 actcggatcg ccggttatga aactcaggca gattacaacg ttagaagacg gtcgaccatt
     4021 tgaatttacg cgttcccagt atgtaggtag tagatttcaa tttgtagcta ggattaaaca
     4081 ataaataaaa gcttgaggcg gaatctgtct gccccaagct tttttgcata atgattttcg
     4141 ttgtcttttt gcaaataaaa aagtataatg agatgagtaa aaaatttgcg gggaggacta
     4201 gccatgagct ggatgattat attgatatgt tttggcgcgt ccgtattact tacaccgcta
     4261 attcgaaaaa tagctctata ctttgatatt acagataaac cagaccaacg tcgtattaat
     4321 attaaaccaa ttccgagttt aggtggacta gcaatgttta tcagttttac tatcggaatg
     4381 tttttactcc caattgaaaa cgaattctta tggccgcttc tgattgcagc atttgtcatg
     4441 gttttgactg ggctattaga tgatattatg gaatttaaag caagatataa attaatcggc
     4501 caagttaccg ctgcctttat tattgtgttt tggggtaaca ttagtatcga ctttatcaac
     4561 ttaccattcg gtggggaaat ccattttggg gtgttaagta tcccactcac aattatttgg
     4621 attgtagcca ttacgaacgc tataaatcta attgatggac tggacggtct tgccgcaggt
     4681 gtttcaacca ttgccttact cactatttta ggaatggcgt ttattatggg agatgcacta
     4741 gtaattatga tagcaagtgt gttaatcgct gggacacttg gtttcttacc ttataatttt
     4801 aatcctgcaa aaattttcat gggggacact ggcgcgcttt tcttaggttt tattatttcc
     4861 gtgttatccg tgatgggatt caaaaatgtt acgtttatct ctttaatcgt accaatttta
     4921 attttaggtg taccgatttc tgatacactt tttgctatta tacgacgcat ggtaacgaaa
     4981 caaccaatcg cgatggcaga taagtcgcat ttacatcatt gtttattacg actaggcttc
     5041 acgcatcgtc aaacggttat tttgatttat gccattgccg cactattttc tttatttgcc
     5101 ttcattttca cgatgtcgac actgtggggt tcgatgattt taatcggtgt actactcatt
     5161 ttaattgagg tattgattga gacgcttgga ttagtaggga gcacatatcg cccattactt
     5221 aatttattta aattaaccaa agaagaaaaa atagattaga gattggtcac ttagactagt
     5281 ctcttttttt tatgccaaaa ttcttattga gtaacaagtc ttcttgtgat acatttatca
     5341 agtaacgttt ttgtagaaat gaggagaaaa acatggaaat cattgcgaca gcagattcaa
     5401 tgaaacaagc tgaacaattg cttcgcgcgg gggtagacag actatatgta ggtaatagcc
     5461 aatttggttt aagattgccg cattcatttt ctgtcgaaga attacgtgaa atagttcatt
     5521 tagcacatca agaaggaaag aaagtaactg tagcagtaaa ttcgttaatg cataacgaac
     5581 atatggaaga gttaccggga tttttagagc atcttgcaga tatgaaagtg gatgcagtaa
     5641 cgtgcggtga tccaggggca attatgcttt tgagtgaaat ggctcaaccg attccgttta
     5701 tttatgacgc ccaaacattt gtaactagcg cagaacaaat ctcgttttgg gaaaaacaag
     5761 gagcgattgg tgcggtactt gctcgggaac taacagaagg cgaaatcaaa gccattgcaa
     5821 gtagccttac tatcccagtt gaagttctgg tttatggacc aacatgcatt caccaatcga
     5881 aacgtaaact agtaacgaat tatgagcgta ttgtcgaact ggaagatgat acatcgaagg
     5941 aacgtggtct ttatttacgc gaacctaatg atgaaacaag tcaattacca atctatgaag
     6001 atgagtctgg aacacatatt tttgcttccg aagatgtttc acttgtccct tatttggcgg
     6061 acttatatga ggctggattg aaaacatgga aactagatgg tgttcttgca gaatcagaga
     6121 attttgttca aatcgcatcg ctgttagttg aagcgaaaga agctgttatg aaaggtcaat
     6181 ttgtcgcaga gtattttgtg aataaattaa cggaacttca gcctccaaca cgaaaactag
     6241 acgcaggatt ttatttgaaa aatccggatg atgtgaaata gggggaatag cataaatgag
     6301 taaaatatta aaaaaaccag aagtgctagc tccggctggc aacttagaaa aattaaaaat
     6361 tgccattcgc tatggtgcgg atgctgtata tattggtggt caggcttttg gtcttcggtc
     6421 acgagcaggt aattttagct ttgaagaaat gaaagaaggt atcgcttttg cgcatgaacg
     6481 aaatgcaaaa gtgtacgttg cggcaaatat ggttgcgcat gctggtgata cagaaggtgc
     6541 tggggaattt ttccgaacat tacgcgatat tggtattgat gcagtgattg tatcggatcc
     6601 agcgctcatt agcatttgtt ttcaagatgc gccagggtta ccagtccact tatctacaca
     6661 agcctcggca acaaactata agacattaga attttggaag aagcaaggtc ttgaacgagt
     6721 tgtacttgct cgtgaagtta gcatgcaaga aattcaagaa atcggcgaaa aaacggatgt
     6781 cgaaatggaa gcatttatcc atggggcaat gtgtatttct tattctggtc gttgtacttt
     6841 atcaaatcat atggctaatc gtgatgcgaa ccgtggcggg tgtgcgcaaa gttgtcgctg
     6901 gaaatatgac ttgtttgaaa ttgataatgg tgtctcgaaa aatttagtgg atactgatga
     6961 agaaccgttt tcaatgagcg cggttgattt atcaatgatt aaatacattc cggatatggt
     7021 aaatgctggt gtggatagtt tgaaaatcga aggacgaatg aagtccattc attatgtttc
     7081 gactgtcgca agtgtatacc gtcgtgccgt agatgcttac tgcgcggacc cggaaaatta
     7141 tgtattcgat ccagcttggg aagaagaatt atggaaagtt gcacaacgcg aactatctac
     7201 aggatttttc tataaagaac caaccgagga cgaacaacta tttgggaaaa cgcggaaaat
     7261 tcctcaatat gcttttgcgg cgcaagtatt ggaatatgac gagaaaacga aaatcgctac
     7321 tttacagcaa cgaaataatt ttggtgttgg agaagaaatt gaattttacg ggccaggaga
     7381 tactggattt aagcagattg tagaagtact ttggaatgaa gatggtgtag aaattgaccg
     7441 tgctccaaat gcaatgatga ccattaaaat gccggtagat aaacctgtga agccatttta
     7501 ctttatgcgg aagaaaaaat aaaaatctca tgctgcagta ggattgtcgt gtactcccta
     7561 agtaaggtat aatggggtaa gtacatatga aggaggagat taattatgat aggatggatt
     7621 attgctatcg ctgttgttgt tattttagta ttgatttatt ttggtctata caacagcctt
     7681 gtaaaatacc gtaaccgtgt ggatgaaact tgggcgcaaa ttgacgtaca attaaaacgt
     7741 agatttgatt taattcctaa tttagttgaa acagttaaag ggtatgcaaa acatgaaaaa
     7801 gaaacattaa cacaagtaat tgaagctcgt aataaaatga tggaagttcc tgctgacaat
     7861 cgtcaaggtc aaatcgaagc ggacaatatg ttaagtggag cgcttaaatc catttttgca
     7921 ttaggagaag cttacccaga tttaaaagca aatacttctt tcatcgaatt gcaacatgaa
     7981 ttaactacta cggaaaataa agtggcttat tctcgccaac tttataatac aaccgtaatg
     8041 acttacaaca caaaagtaca atctgtacca acaaacatcg ttgcaaaact gcataacttt
     8101 acagaacgtg acatgctttc tattcctgaa gtagaacgcg ttgcaccaaa agtagagttt
     8161 taagccatga aggagagcga aaattatgct atttgaacaa attgcagcaa ataagcgaaa
     8221 aacaattttt attattcttg gctttttcat tttcgttctt atggttggcg ctgctatagg
     8281 tataattgtt tggaataact atctgaatgg gctcatactc gcggcagtga ttggtgcatt
     8341 ttatattttg attatggtaa tgagcagttc atctgttgtc atggcgatga accatgcgaa
     8401 agaagttaca tccaaagatc aagcgccagt tttgtgggat acagtagaga gtatggcaat
     8461 ggttgctggt attccgatgc caaaagtata tatcgttgaa gatgcaagtc cgaacgcatt
     8521 tgcgacgggg atttctcctg aaaaaggagc cgtggcggtt actagaggat tgcttaataa
     8581 attagaacgt tatgaacttg agggcgttat tgcgcatgaa atttctcata ttcgtaatta
     8641 tgatattcga ttatcaacga ttgccattgc gctagtagct gttattgcga ttcttagtga
     8701 tttagctatg cgaatgattt tctggggaag cctaactggt ggcagaaata atcgtaagag
     8761 tgacaataat aacagtggcg gggcacaagc gattatctat atcgttgcac tcatatttgt
     8821 tattttggcg cctattattg caacagctat ccaatttgct ttatctcgta atagagagta
     8881 tttagctgat gctagtgcgg tagaattaac cagaaatcct gatggactta tccaagcttt
     8941 acaaaaaatc agcggagatt cgaaaaaaat ggaagaagtt agtgcttcta gtgagtccat
     9001 ttactttgcg tcacctctaa agtctaaaaa aaataagcca ggtctttttg actctcatcc
     9061 gccaattagt tcgcggattg aacgcttaga aaatatgtaa aaaaaaagaa gcaacccagg
     9121 aatgggggtg cttctttttt ataagtttcc gatgtatttc cagtgagcct ggccatctgg
     9181 agcatcgatt aattctactt tttgttggag acgccatttt ttcatttgac gctcgatttg
     9241 ttgttcagaa acaccataaa aatctgccat agtagcggaa gaagtaactt ttacttttgc
     9301 caagtattct tccatttgcg ggcgttcttc tggttgtggg gcatcattta aaagctcgga
     9361 taaaacatgc acataaactt cataacgatg aagcccactt agttttaatc cagcatcttc
     9421 tatattttta ttgaaaaaga ctacggtagg attttcatga atttccattt cttgagctac
     9481 tttttgatcg ccaatataag cacgcttggc aactgtagaa gctagatctt ttttgaattc
     9541 tgataaatct agaccggtgg aaacggcgat atcataaagt acttcttcgc tagcgatatc
     9601 tttattttca aggaagtagg ctgcttgtat tttgcgcaag aatgtaattc cttgtttttt
     9661 tccttgtagt tcagcggctt tgactgcaag acaagaaata taggaaaggt gcgcccctat
     9721 ttgttgttct tttaagctta ggttactatt tcctgcgcgc ttttgtttac atacaaatgt
     9781 ctgcaaatta ttatgcagaa catagcgcaa tttgaaatag ttcccgtact ccatttgtaa
     9841 tcggagcata ttcgcttcaa tattccaaca gtcatcacaa gctggatcaa aaaatagata
     9901 aatttcgatt ggcttggaat ttgctactga ctgataatat aaattttggt taatcatttg
     9961 c
//
LOCUS       DASEAA010000094         9939 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.094, whole genome shotgun sequence.
ACCESSION   DASEAA010000094 DASEAA010000000
VERSION     DASEAA010000094.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9939)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9939)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9939
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.094"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..403
                     /gene="srtB"
                     /locus_tag="U0342_001901"
     CDS             <1..403
                     /gene="srtB"
                     /locus_tag="U0342_001901"
                     /EC_number="3.4.22.71"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="class B sortase"
                     /protein_id="HEM2423245.1"
                     /translation="FKDYRNTNEFLDKNTIIYGHNMKDGSMFADLRKYLDKDFLAAHP
                     TFSYESGLANYEVEIFAVYETTTDFYYIETEFPETTDFEDYLQKVKQQSMYKLNVKVS
                     GKDRIITLSTCDTEKDYEKGRMVIQGKLVTK"
     gene            464..940
                     /locus_tag="U0342_001902"
     CDS             464..940
                     /locus_tag="U0342_001902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465704.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HEM2423246.1"
                     /translation="MKLYELTDNYLKVQEFLEENNTDAVKDTLDALTDSFHDKSENIV
                     KLIKSLAADAEMAGIEAKRLLKRKQALENNVQNLKNYLQTEMERMEIRKINSTLFTIQ
                     IQKNPPSVEIVEEALLKSFFLLQEPKIDKKRIAEILKSGEEVKGARLVESESIRIR"
     gene            1133..4588
                     /locus_tag="U0342_001903"
     CDS             1133..4588
                     /locus_tag="U0342_001903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423247.1"
                     /translation="MSHLKKLVSILICTLLIVSFLPFSVWANSQERDGTDVEEITTKE
                     KVTQETTSNETTSEPLKETTVNEAINTKSFPTGNYSGDFSINSQKDVIESGQTVNYNI
                     YLKITGPNTTYQNAKLVINLPKNGEFNQSLNELKIAGETPSYNKTTRQLVYTYQTLNS
                     GVVDKVILKLTTKNGYTPNGTKLVVTGELSADNLLGKVTEQAETTVNATATTALSNDF
                     ARVENSINNNPSQGDIGIWSFNLNIPKKSTGSLFMEEGKKIVIEYILADKLDYLGVAG
                     DTPEPTKVEGQKLTWEIAAPTYLEQEKANSLLNKTFQIRTFFQTTIPNFATVENKAVA
                     TTNFVTLADSIVDTSKASVSVSASDPATIPPTIGSVYAPAHRGPVDANWGIATVTGNP
                     DIKAYDTAKLGFSLMLNSAMNDSPSYDFLYYDAYYNIDDNLNLDYFQSGDFYFKPNVN
                     YPGWAQLKKSPKYNLLVKYDGDSDWTTLKEDVELSKMYSRKDLGIPDDKHVSKVWLHF
                     TYAPAGMYAANLSFFTTVKEGYVGEVRNSTQINMYGADSQGYIHYYDDTNPWPEAWKN
                     YAGDRTAQIIPQPTGKNKFVQGSVAFDDTDGNLINIGDNSISVNLESNKASISRLKGP
                     FEAVVLLPSGVKMKKTEQNDFNVTVLNENYQNAGRQLLKVKWDKKTLLPAEKLTAKIN
                     VSVAKDTPSNMTVEMFGFLQETDFNVPEVTGTPTISDTKMEIDSDDINQNGNSEESRI
                     TSGNHYILNTSNHLKISKKAKGNRDKEYSGLANATTNSIVSYQLSLENDSDEKIANMV
                     LMDVLPSENDLGITDNSERGSKFNLELTKAVAIPNEWKDKVDVKYSTAKNPKRAGVLD
                     KHTIYPTGSEPLVDNAEATEADWLTASEVQDWSKIYSFKMELKEGIEWIPGKSMKIQF
                     DLKTPKKNQIDKGFLNQQTKKEDRAAWNSFAVAVNNSQVIEPAQVGVALDDSVAPVTV
                     QYVDQNHKQIASPETLTGAYGEKFTAKQKKITNYTLVKTPANVSGTFNEKAQTVTFVY
                     QKVTAGNIIVDYVDKNGEKLADSIVLTGKLNSSYRTSAKKISGYKLYQTPKNASGKFL
                     NSSQKVTYVYEKTSALSVSSNERAGNVKKSEKLPQTGDSKKTNLWFILGMLLLSSAFV
                     LAKKR"
     gene            4769..9901
                     /locus_tag="U0342_001904"
     CDS             4769..9901
                     /locus_tag="U0342_001904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423248.1"
                     /translation="MKNIRHWKKLVIAMVIGLLVFQNVSPVLATMTDDETAKTTLKIT
                     KEDKDTKEKINGSTFEIKNKETGETNDLTISANGEATMDSLSPGDYLVKEKVAPKGYT
                     LDEKEYSVTLAEKEEVITSVSAKVQEETTKEATTPTPVKKATQNANLKAAITDNIFNK
                     VTLKDGNGDEINTSDRIQNGSGVVLNMNFAFSGKNYKAGDTFTTVLPDAFNFGNKNLS
                     GNFLPSTEAEWTLDVTTRELTITFLKDGIQEGDYDVNISTAFKVFTSTEETIQEVVFK
                     TAGKDTVYQIEVVPVVNYPTTVGITANPGVVNPTKGQVDAKFNLTKEKDAKGELKLND
                     YASGGTTTIDKDTIKVYSSDVSAGGTFIGTKKLLVEGTDYTLTYSATSLTVTLNGGLA
                     GKGYQVTYDRTINKPSDSLSYMSTQAYTVGDSGTLSSNSAYVYLTMTNYKHIEKKATY
                     NGSTQSIDWKINFNFDQDEISPSTVLTDVLADNDVEYVADSLKIKRVTFNATNGSPIV
                     GGDASSDWTTSAISANGNFNLTYKNTNTNAYEITYSTKITDFSDRKIKNEITDENGVS
                     ADATIAIQPDLLKKEAGTIDYFNNTMTWKITANSDRIKMGNLNITDEFSTGVKALKSY
                     TVRAYTDNINSVLLTEGKDYTIDKDVTPAGFYIQLIGDYATTDKKIVVDFVTEIDLSD
                     VTKTIDNKASISYYDGGIIKYVDDVKASMTPDPAMMTNGGKYGSYNSTTGNIDWIVSV
                     NAMAKNYDNLIFDDAIPTGLTYVEGSLQYRNVASTSEMMNLYIPLNSVGTVAKTGDKN
                     YPTKVDTTGNKLHLEFANLENSRVFIKYSTKPNENWYFYSYVQNTAKVSDNGVGEKSY
                     SYQAYASKLYNAMTKTATIDPSFDNKVNWVVTLNNISADRPINNPTITDTMKTGTTGA
                     QVVKSSFKVINETTGEDIDSKYYDITYTDNNFTIQFKDYKATAPIKVTYSTISLMSGL
                     VSNTATTASPDYGSLPMTYKSRTTSISPAFTIGSGSGTATIGSLEITKVDKKDNTKKL
                     AGAKFQLYTLEGDKAGQEATTDTDGKIVMDGLQSGKYKLVETEAPTGYTISDEYKDGK
                     EITVTADAVTNVTIENTEQTGSAVLLKEDSVTKDAIAGAEFELQNADGTKVAENLVSN
                     ADGKIEVTDLAPGDYQFVETKAPTGYVLDATPSKFTIEFNQEAAVIVTKENTAKTGSV
                     VLTKEDSVTKATIAGAEFDLQKADGTKVSENLVTDADGKIEANDLAPGDYQFVETKAA
                     AGYVLDATPSEFTIEFNQDKAAVVTKENTAKSGSVVLTKQDSATKAALSDAEFELQTA
                     TGTKVKDNLTTNASGEIEVADLAPGDYKFIETKAPTGYELDATPVTFTIEFNQSTAVK
                     VTKENVAKTGSVVLTKLDSKSRSNLAGAEFELQTKLGVSLKDKVVTEANGQLQIDNLA
                     PGDYQLVETKAPTGYELDATPVEFTIEFNQKDAVQVTKTNKMSTGSVVLTKTDGQTKA
                     PLADATFKLVDADNNVTENLTTDASGKLEITNLAPGDYQLIETKAPKGYELDTVPVDV
                     KISFNQNQVLQVTKTNIKTVVSGKVIAEFVDTKGNVLAEQEIHAGLVGEKYVTKAKSI
                     AGYKLTKDPTNKVGIYKEADQKVTFVYEKNKSPLVVDPTKPIKPSKPTKPSANPSKQA
                     TVKKAQSLPSTGDNSLANLIITGLFASTLGLFLLRKSKKVND"
BASE COUNT         3787 a         1659 c         1905 g         2588 t
ORIGIN      
        1 ttttaaagat tatcggaata cgaatgagtt tttggataaa aatacgatca tttatgggca
       61 taatatgaaa gacggatcca tgtttgcgga tttacgtaaa tacttggaca aagatttttt
      121 ggcggctcat ccaacgtttt cctatgaatc gggcttggcg aattatgaag tggaaatctt
      181 tgctgtgtat gaaacgacga ctgattttta ttacattgaa acagaatttc cggaaacaac
      241 tgattttgag gattatttac aaaaagtgaa acaacaatct atgtataaat taaatgtaaa
      301 agttagtgga aaggaccgaa ttataacact ttcaacttgc gatacagaaa aagattatga
      361 aaaaggacgg atggttattc aaggaaaatt agtaacaaaa tgagaaagca ccaaaatata
      421 ataacatttg gcgctttttc cttttttgga aagggtgcga acgatgaaac tatatgaact
      481 aaccgataat tatttaaaag tacaagaatt tttggaagaa aataatactg atgctgtgaa
      541 agatacgtta gatgcgctta ctgatagttt tcatgataaa tcagagaata ttgttaaact
      601 tattaagtct ttagctgctg atgctgaaat ggcgggaata gaagcgaaac gacttttaaa
      661 acgaaaacaa gcactagaaa ataatgttca aaatttaaaa aactatttac aaacagagat
      721 ggaacgaatg gaaattagaa aaataaacag tacacttttt acaattcaaa tacaaaagaa
      781 tccaccaagt gtggaaatag tggaagaagc tttgctaaaa tcgttctttt tactacaaga
      841 acctaaaatt gataaaaagc gaattgcaga gatactaaaa tctggtgagg aagtaaaggg
      901 tgctagatta gttgaaagcg aatcgattcg aataagataa ataaaacaac caaaatcgtt
      961 gaattcttca acaattttgg ttgttttttg ttaataatga catttttgcg actataaacg
     1021 taaaatagtt cacattttcg taacaaactg tcctattttt tgtaccttga gaacatttag
     1081 ctgcttcctc ctatgaaata attaatcttg agtaaacaaa ggaggggcga atgtgagtca
     1141 tttgaaaaaa ttagtatcta tattaatttg tactttgctg atagtttcat ttcttccatt
     1201 ttcagtttgg gcaaatagtc aagaaaggga tggaacggac gtagaagaaa taactacgaa
     1261 agaaaaggtt acgcaggaaa cgacttcaaa tgaaactact tcagagcctt taaaagagac
     1321 cacagtcaat gaagcaataa acacaaaatc atttccaact gggaattatt caggggactt
     1381 tagtattaat tctcaaaaag atgtgattga atctggtcag acggtaaact ataacattta
     1441 tttaaaaatt actggaccaa acacaacata ccaaaatgct aaattagtaa tcaatttacc
     1501 aaaaaatggg gaatttaatc aatcattaaa tgaacttaag attgcgggag aaacgccaag
     1561 ttataacaaa acaactcgtc agctcgttta cacatatcaa acactgaaca gtggtgtagt
     1621 tgataaagtg attcttaagc tgactacgaa aaatggctac acaccaaatg gaacgaaatt
     1681 agtagtaaca ggtgaattaa gtgcagataa tttacttgga aaagtaaccg aacaggctga
     1741 aacaactgtc aacgcaacag ccacaacagc tttatcaaat gattttgcta gggtagaaaa
     1801 tagcatcaac aataatccga gtcaaggtga tatcgggatt tggtctttca acctaaatat
     1861 tccgaaaaag tctacaggaa gcctttttat ggaagaaggt aagaagattg ttattgagta
     1921 tatattggca gataagctag attacttagg tgtagcagga gatacaccag aaccaacgaa
     1981 ggtcgaagga caaaaactaa cttgggaaat tgcagcacct acatatttgg aacaagaaaa
     2041 agcaaacagt ttacttaaca agactttcca aattagaacg ttcttccaaa ctactatacc
     2101 aaattttgca acggtggaaa ataaagctgt tgcaacaacg aactttgtta ctttggctga
     2161 tagcattgta gatacatcca aagcatctgt ttcagtttca gcaagtgacc cagcgacaat
     2221 cccgccaact attggaagtg tttatgctcc agcacacaga ggcccggtgg atgcgaattg
     2281 gggaatcgct actgtgaccg gaaatcctga tataaaagca tatgatactg ctaaattagg
     2341 ctttagtttg atgttaaatt cggcgatgaa tgattcacct tcgtacgact tcctttatta
     2401 tgatgcttac tacaatatag atgataattt aaatttggat tacttccaga gcggcgattt
     2461 ttactttaaa ccaaatgtta attaccctgg ttgggcgcaa ctaaagaaat cacctaagta
     2521 taatttactc gtgaaatatg atggtgatag cgactggacg acactaaaag aagatgtaga
     2581 actgagcaaa atgtattcga gaaaagatct tgggattcca gatgataagc acgtgagtaa
     2641 agtatggctt catttcacgt atgctccagc tggaatgtat gctgctaatc tatctttctt
     2701 tacaacagtc aaagaaggtt atgtaggtga ggttagaaat agtacacaaa tcaacatgta
     2761 cggagcggat agtcaaggct atatccatta ttatgacgat acaaatcctt ggccggaagc
     2821 ttggaaaaat tatgcaggag accgaacagc gcaaataatt ccgcaaccta ctggtaaaaa
     2881 taaatttgta caaggatcag ttgcgtttga tgataccgat gggaatttaa tcaacatagg
     2941 tgataattct atttctgtta atttagaaag caataaagct tctatttcac gattaaaagg
     3001 tccttttgaa gcagtggttt tgttaccttc aggggtcaaa atgaaaaaaa cggagcaaaa
     3061 cgactttaat gtaacagtgt tgaacgagaa ttaccaaaac gcagggcgtc aattactaaa
     3121 agtcaaatgg gataaaaaga cgcttttgcc agcagaaaaa ttaacggcaa aaattaatgt
     3181 gagtgttgca aaagacacac ctagtaatat gactgttgag atgtttggtt tcttgcagga
     3241 gacagatttt aatgtgccgg aagtgactgg aactccaacc atttctgata caaaaatgga
     3301 aattgactca gatgacatta atcaaaatgg gaattcggaa gagtctagaa tcacatcggg
     3361 aaaccattac attttaaata cgagtaatca tttgaaaatt agtaaaaaag ctaagggtaa
     3421 tcgcgataaa gaatacagcg gattggcaaa tgccacaaca aattccattg tttcatatca
     3481 attgtcactg gaaaatgatt cagatgaaaa aatagctaat atggttttaa tggatgtttt
     3541 accaagtgaa aatgatttag gaattacaga taacagcgaa cgtggtagta aattcaactt
     3601 ggagctaacg aaagcagtgg caattccaaa tgaatggaaa gataaggttg acgtaaaata
     3661 tagtactgcc aaaaacccta aacgtgcggg cgttctcgat aagcacacga tttatccaac
     3721 tggttcagag cctctagttg ataacgcaga agcaacggaa gcagattggt taaccgcatc
     3781 agaagtacaa gattggtcca aaatttactc ttttaaaatg gaattaaaag aaggtattga
     3841 gtggattcct gggaaatcca tgaaaattca atttgattta aaaacaccaa agaaaaacca
     3901 aatagataag ggatttttaa atcagcaaac aaaaaaagaa gaccgagcag catggaattc
     3961 atttgctgtg gctgtaaata attctcaagt aattgagccg gcccaagtag gagtggcttt
     4021 agatgatagt gttgcgccag ttacggtgca atatgttgat caaaaccata aacaaattgc
     4081 cagcccagaa acattaacag gagcttacgg agaaaaattc actgcaaaac agaaaaaaat
     4141 tactaactac acccttgtaa aaacacccgc gaatgtaagt ggaacattta acgaaaaagc
     4201 acagacagtt acttttgttt atcaaaaagt gacagccgga aacatcattg tcgattatgt
     4261 cgataagaat ggtgaaaaat tagctgattc gattgtttta acaggaaaat taaattcaag
     4321 ttatcgaact tcggccaaaa aaatctcggg atataaattg tatcaaacac ctaaaaatgc
     4381 atcggggaaa tttttgaata gctcacaaaa agtaacttat gtgtatgaaa aaactagcgc
     4441 tttatcagtt tcttctaatg aaagagctgg aaatgtgaaa aaatcggaaa aactgccaca
     4501 aacgggagat tctaagaaaa ctaatttatg gtttattctt ggaatgctct tactttcaag
     4561 tgcttttgta cttgcaaaga aaagatgata ttaaaagtat tttaaaaggt gtttaaagtg
     4621 tttccaattc attttgctta ttaaaaagac acatattact ttggatttcg caaaaagtaa
     4681 ttattgggtg catttatttg tcaaaactca acaaatcttt tagggattta acaacagtta
     4741 gaaatagatt ataggaggac aaaacaaagt gaaaaatatc agacactgga agaagctagt
     4801 tattgcaatg gttatcggat tactagtatt ccaaaacgtt tcacctgtac tagctacaat
     4861 gacagacgat gaaacggcaa aaacaacatt aaaaatcacc aaagaagata aagatacaaa
     4921 agaaaaaatc aatggttcta cctttgagat aaagaataaa gaaacgggcg aaacaaacga
     4981 tttaacaatc agcgcgaatg gtgaagcgac tatggattca ctttcacctg gtgactatct
     5041 tgttaaagaa aaagttgcgc caaaaggtta cacactagat gaaaaagaat atagtgtaac
     5101 tttagcagaa aaagaagaag tgattacttc ggtttcagca aaagtgcaag aagaaacaac
     5161 aaaagaagca acaacaccaa caccggttaa aaaagcaaca caaaatgcaa atctaaaagc
     5221 tgctattaca gacaatattt ttaacaaagt aacgctaaaa gatggtaatg gcgatgaaat
     5281 caacacttca gaccgaattc aaaatggtag cggtgttgtg cttaacatga actttgcgtt
     5341 ttctgggaaa aattataaag cgggagatac gtttacaact gttttaccag atgctttcaa
     5401 ctttgggaac aaaaatttaa gtggtaactt cttaccatct acagaagcag aatggacgct
     5461 tgacgttaca acgcgtgaac ttacgattac tttcttaaaa gatggcattc aagaaggcga
     5521 ttatgatgtg aatatcagta cagccttcaa agtgtttacc tcaacagaag aaacgataca
     5581 ggaagttgtt ttcaagacag ctgggaaaga tactgtttat caaatcgaag ttgtaccagt
     5641 agttaactac ccaacaactg taggaattac ggcgaatcca ggggtagtaa atccgacaaa
     5701 aggtcaagta gatgccaagt tcaacttaac aaaagaaaaa gatgctaagg gtgagctgaa
     5761 acttaatgat tatgcttccg gtggaacaac aactattgat aaagatacca tcaaagtata
     5821 ttcgagtgat gttagtgctg ggggaacctt cataggtacg aaaaaattac ttgtagaagg
     5881 cacagattat acgctaactt attccgcaac ttctctaact gttacgttaa acggtgggct
     5941 tgctgggaaa ggctaccaag taacatatga ccgcacaatc aataaaccaa gtgattcact
     6001 ttcttatatg tctacacaag cttatacagt aggcgattca ggaacattat caagcaactc
     6061 cgcttatgtt tacctgacaa tgacaaatta taagcatatc gagaaaaaag ctacttacaa
     6121 cggctcaaca caaagtattg attggaaaat taactttaac tttgatcaag acgaaatatc
     6181 tccttcaaca gtgcttaccg atgttttagc ggataatgat gtcgaatatg tagcagattc
     6241 acttaaaatt aaacgagtaa cttttaacgc aacgaatgga tcgccaatcg ttggaggtga
     6301 cgcttcaagt gattggacaa cttcagcaat ctcggcaaat gggaatttta atttaacgta
     6361 taaaaacaca aacacaaacg catatgaaat cacttattcc acgaaaatca cggactttag
     6421 tgatcgtaaa attaaaaatg aaattacaga tgaaaatggt gtttccgctg acgcaacgat
     6481 cgcgattcaa ccagatttac tgaaaaaaga agctggaaca attgactatt ttaataacac
     6541 gatgacatgg aaaatcactg ccaactctga cagaattaag atggggaatc ttaatatcac
     6601 agatgaattt tctactggtg taaaagccct taagagctac actgttcgtg cctatacaga
     6661 taatatcaat agcgtcttat taacagaagg caaagattat acgattgata aagatgtgac
     6721 accagctggt ttttatattc aacttatcgg cgattatgct acaacagaca aaaaaattgt
     6781 agttgatttc gtcacagaaa ttgacctttc tgatgtaaca aaaacgattg ataataaagc
     6841 atccatttct tattacgatg gcggaattat caagtatgtt gatgatgtaa aagcttccat
     6901 gacaccagac ccagctatga tgacaaatgg tggtaaatac ggatcgtaca actccactac
     6961 ggggaatatc gattggattg tatctgtaaa tgctatggcg aaaaactatg acaacttaat
     7021 ttttgatgat gctattccaa ctggattaac atacgtagaa ggctcactac aatatcgtaa
     7081 tgtggcttcc acaagtgaga tgatgaattt atacatcccg cttaactctg ttggaacagt
     7141 agctaaaaca ggtgataaaa actacccaac aaaagtcgat actactggga ataaattaca
     7201 tttagaattc gctaacttgg agaattcacg cgtatttatt aaatacagta ccaaaccaaa
     7261 cgaaaactgg tatttctact cctacgtaca aaacactgcg aaggtgagcg ataatggagt
     7321 aggcgaaaaa tcttacagtt accaagcata cgcaagcaaa ctttataatg cgatgacaaa
     7381 aacggctact attgatccat cttttgataa taaagttaac tgggttgtta cactgaacaa
     7441 tatctctgca gatcgtccta ttaacaatcc aacaattaca gatacaatga aaacaggaac
     7501 aacaggagcg caagtagtaa aaagtagctt taaagtaatc aatgaaacga cgggtgaaga
     7561 tattgactca aaatattatg acatcactta cacagacaat aatttcacta tccagttcaa
     7621 agactataaa gcaactgcac caattaaagt aacctatagt acaatcagct tgatgtctgg
     7681 gcttgttagt aacacagcga caactgcttc tcctgactac ggtagtttac caatgacata
     7741 taaatcaaga acaacaagca tatcgccagc cttcactatt ggtagtggta gcgggacggc
     7801 aacaattggt tcacttgaaa ttaccaaagt ggataaaaag gataatacga aaaaactagc
     7861 aggagctaaa ttccaacttt atacgcttga aggtgataaa gcgggacaag aggctaccac
     7921 tgatacagat ggtaaaatcg tgatggatgg ccttcaatct gggaaatata aactagttga
     7981 gacagaagcg ccaacaggtt acacaattag tgatgaatat aaagacggta aagaaatcac
     8041 ggttaccgcc gatgcagtta caaacgttac aattgaaaac acagagcaaa ctggtagcgc
     8101 ggttctttta aaagaagata gtgtaacgaa agacgctatc gcaggagcag aattcgaatt
     8161 acaaaatgca gacggtacaa aagtcgctga aaacttagta tctaatgcag atggtaaaat
     8221 cgaagtaact gacttagcgc caggcgatta ccaatttgta gaaacaaaag cgccaactgg
     8281 ctatgtatta gatgcaacgc caagcaaatt cacgattgaa tttaaccaag aagccgctgt
     8341 aattgttaca aaagaaaaca cagcgaaaac tggtagtgtg gttctaacga aagaagatag
     8401 tgtaacgaaa gctacgatag ccggagcgga attcgattta caaaaagcag acggaacaaa
     8461 agtatccgaa aacttagtaa cagacgcaga cggtaaaatc gaagcaaacg atttagcacc
     8521 aggagactac caatttgtag aaacgaaagc tgcggctggc tatgtattag atgcaacgcc
     8581 aagcgaattc acgattgaat ttaaccaaga caaagcagct gtcgtaacaa aagaaaacac
     8641 agcaaaatct ggcagcgtag ttctaacaaa acaagatagt gcaacaaaag ctgcgttatc
     8701 tgatgcggaa tttgaactac aaactgccac tggaactaaa gtaaaagata atttaacaac
     8761 gaatgcaagt ggtgagatag aagtagctga tttagcacca ggcgattaca agttcattga
     8821 aaccaaagca ccaacaggct acgaattaga tgccacaccg gttactttta ccatcgaatt
     8881 taaccaatcg actgcagtca aagtaacaaa agaaaatgtt gcgaaaactg gtagtgtggt
     8941 cttaactaag ctagatagta aatcaagaag taatttagct ggtgcagagt tcgaattaca
     9001 aacaaaactt ggtgtcagtt tgaaagataa agtagtgaca gaagcaaatg gtcaactgca
     9061 aattgataac ttagcaccag gcgactacca attagtagaa acgaaagctc caacaggtta
     9121 tgagcttgat gcaacaccag ttgaattcac cattgaattt aaccaaaaag atgcagttca
     9181 agtgactaaa acaaataaaa tgtctactgg atctgttgtg ttaactaaga ctgatgggca
     9241 aacaaaagcc cctcttgcag atgcaacgtt taaattagta gacgcagata ataacgtcac
     9301 agaaaatcta acaacagatg cttctggtaa actggaaata actaatctag cccctggtga
     9361 ttatcaatta attgaaacga aagcaccaaa aggttatgaa ttagataccg ttccagtcga
     9421 tgtgaaaatc agttttaatc aaaatcaagt gcttcaagta actaaaacaa atattaaaac
     9481 agttgtaagc ggcaaggtaa tagctgaatt tgttgataca aaaggaaatg tattagcaga
     9541 acaagagatt catgcaggtt tagtcgggga gaaatatgta actaaagcga aatctatcgc
     9601 gggttataaa ctaacgaaag accctacgaa taaagtcggc atatacaaag aagcagatca
     9661 aaaagtaacc tttgtatatg agaaaaataa atcaccactc gttgtcgacc ctactaaacc
     9721 aattaaacct tctaaaccaa caaaaccatc agcaaaccct tcaaaacaag ccacagtgaa
     9781 aaaagcacaa agtcttcctt caacaggaga taattcccta gctaatctaa tcattaccgg
     9841 attattcgct agtacactag gacttttctt actaagaaaa tccaaaaaag taaatgatta
     9901 ataattgtag tcgctattct taacaggata gcgactttt
//
LOCUS       DASEAA010000095         9934 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.095, whole genome shotgun sequence.
ACCESSION   DASEAA010000095 DASEAA010000000
VERSION     DASEAA010000095.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9934
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.095"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..904
                     /locus_tag="U0342_001905"
     CDS             <1..904
                     /locus_tag="U0342_001905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464446.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="permease"
                     /protein_id="HEM2423249.1"
                     /translation="ARVIPKNKFLAVIVGSLIGVFFPSCECGIVPIVRNLLAKGVPLH
                     AGIAFMLTAPIINPVVLFSTYVAFGSTWEVPLLRVAGSLVVALVVGNIIAYFYKGTGL
                     KERFLKYEAASEKVAVPATNLALAGGPSESTTTNFQVLTSDGALTEDAHKGHAHHHHG
                     EEHAHTKMTLSQKIWHTVQHAVDEFFSVGKYLVFGALIAAAMQTYIKTSTLVSIGHGP
                     ILSILLMMVLAFVLSLCSEADAFIGASFRSVFSTQSIVAFLVFGPMLDIKNLMMMLGA
                     FKAKFVLLIVTSVTIVVFLYALVI"
     gene            923..1762
                     /locus_tag="U0342_001906"
     CDS             923..1762
                     /locus_tag="U0342_001906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464447.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TIGR03943 family protein"
                     /protein_id="HEM2423250.1"
                     /translation="MFRVFILFGFGFYLMQLHISGDISKYINMKYAYLSFSAMIAAFL
                     LAIIQLIMVFRDEDIGAKTEHMGHTHDGENTILKKIMVYGLLSYALIAGFLFPVATLD
                     STIVSAKGFHFPKNNAAGDDPYAQNQFLRPDTSGYFGETDYEKMMAKEKAEIIDQNPI
                     KVNDSNYLMTMEILYNYPGEFTGKQIEFTGFVYNDEVTQDNNLFLFRFGIIHCVADSG
                     VFGMLVQMPEKTDLKNDTWLTVKGTITQEYYSPFKMNIPSVQVESYKEVAKPKSVYVY
                     RKY"
     gene            1851..2771
                     /locus_tag="U0342_001907"
     CDS             1851..2771
                     /locus_tag="U0342_001907"
                     /EC_number="2.7.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464448.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I pantothenate kinase"
                     /protein_id="HEM2423251.1"
                     /translation="MNDYNHYFHFPREEWRKLEVSKDQILTAEELEEIRGLNDRISLQ
                     DISEIYLPLIKLIAIQYHEAIFIHGEKMEYLKKKESRAPFIIALAGSVAVGKSTTARV
                     FKLMLDRWFSKTRQVELVTTDGFLYPNKVLEERGIMDKKGFPESYDRDRFAKFLTDLK
                     ANKEDVEIPLYSHFTYDVLDETRVIHNPDIVIIEGINVLQADQHESLFPSDFFDFSVY
                     MDANEADIKKWYLERFFMLRETAFQDESSYFHPYTKISKQEAETFALGVWDTINGVNL
                     KENIEKTKYRADLVLQKGTDHLISDIYLRK"
     gene            2887..3609
                     /locus_tag="U0342_001908"
     CDS             2887..3609
                     /locus_tag="U0342_001908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423252.1"
                     /translation="MSEIAIKVSNLDVKIGKKQILTNMTLEIEKGEIFGLIGPSGAGK
                     TTLVKTIIGMEKATNGTTEVLGKAMPNLPVISKIGYMAQSDALYTDLTAKENLDFFAS
                     LYSIKGAAKKDRMNYAATLVNLQQDLTKKVNNYSGGMKRRLSLAISVLADPDVLILDE
                     PTVGIDPELRKTIWAELGDLKANGKCILVTTHVMDEAEKCDRLAMIRNGQIIAVGTPQ
                     ELSSKTSSGKLEDAFLEFGGKH"
     gene            3609..4724
                     /locus_tag="U0342_001909"
     CDS             3609..4724
                     /locus_tag="U0342_001909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464450.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423253.1"
                     /translation="MRIFAIVKRIINQFRRDKRTLALMFLAPLLLITLLTYLFEGDTV
                     KPVVGVSGLSDSMVKELKANDLTIKTYSENTDVTAKIKDANLDAFFKQNGEKLEVTYE
                     NSEPSLSKEIGLKLQKAMMTEQQAQVKKQAKATGESLAKAGIDPNTIPSLTQSPEKLS
                     ISTNYVYGDKGTTFFDTISPIFIGFFVFFFVFLIAGISFLRERTTGTLERLMATPIKR
                     IELELGYLIGFGIFALLQSILVAVFSIQVLGMMQNGSLFYVLLITLTLGMVSLALGIL
                     LSTFANNEFQIVQFIPIVIVPQVLFCGIFPLDGMADWLVWIAHIMPLYYGANALTSIM
                     VKGEGFASFATDFYILLGFVLVFVILNIFALKKYRKV"
     gene            4747..5403
                     /locus_tag="U0342_001910"
     CDS             4747..5403
                     /locus_tag="U0342_001910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464451.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2423254.1"
                     /translation="MDAEGDIIRQMLDLTEKETKMSEKQRRIVAASIELFAEKGYAGT
                     STNEIAKKAGVAEGTIFRHYKTKKDLLMAITMPTLIGGVIPFLAQSFVKEVFESEYPD
                     FQSFIREIIVNRFDFAKENGKVIKIYFMELFYHDELRIQFSEIFMTHVKGQFDQMIDY
                     YKERGEIVDMPNSTIMRALITNIVGFMLTRFVVMPDVEWDDAKEIDDTVAYIMRGLGK
                     "
     gene            complement(5435..7396)
                     /gene="ltaS"
                     /locus_tag="U0342_001911"
     CDS             complement(5435..7396)
                     /gene="ltaS"
                     /locus_tag="U0342_001911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoteichoic acid synthase LtaS"
                     /protein_id="HEM2423255.1"
                     /translation="MKDWKIKIQTFLSKNYGFFVLAVILYWLKTYIAYQLEFKLGIEN
                     LMQQILLFINPLSGAIFFMGLALFAKGRRSFIWIIVIDFLMSFILYANIVYYRFFSDF
                     ITLPNLNAKQMQNMGDMGSSITALLSWHDIIYFADIIILIALLAFRFVKPNKTARIRA
                     RKVVGVLTLGIAMFFGNLGLAEIDRPQLLTRTFDRNYIVKYLGMTNYQIYDAVKSTES
                     STQRALADSSDVTEVLNYTKSKYAAPNPEYFGKAKGKNVIYIHLESFQQFLVNYKLNG
                     EEVTPFINSFFKDQNTLSFTNFFHQTGQGKTADSEMLLENSLYGLPQGSAFTTKGQNT
                     YESASAILGQQGYTSAVFHGNYKSFWNRDEIYKQFGYDNFFDASYYDMNEADVSNYGL
                     KDKPFFKESEEYLSSLQQPFYTKFITLTNHFPYPIDEKDASIAPATTGDSSVDTYFQT
                     ARYLDESVKSFVDYLKKSGLYDNSVIIMYGDHYGISDNHEEAMTKILGKDYNTFENAQ
                     AQRVPLMIHVPGVQGGVQEQYGGQVDLLPTLLHLLGVDNKEYLQFGTDLLSKDHKQLV
                     PFRNGDYITPTYSMIGGNMYNQQTGEPIATETKEMKETKEKVAKELELSDSVLQGDLL
                     RFYAPDGFKKVDPSKYNYNKKKSTDSSDK"
     gene            7655..8278
                     /locus_tag="U0342_001912"
     CDS             7655..8278
                     /locus_tag="U0342_001912"
                     /EC_number="3.2.2.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464453.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-3-methyladenine glycosylase"
                     /protein_id="HEM2423256.1"
                     /translation="MEAIITKEFFEDKTTIELARDILGMRLVHQTDEGILSGLIVETE
                     AYLGATDMAAHSFQNLRTKRTEVMFSSPGRIYMYQMHRQVLLNFITMPKGIPEAILIR
                     AIEPDEQAKQQMVQNRHGKTGYELTNGPGKLTQALGLSMQDYGKTLFDSNIWLEEAKL
                     PHLIEATNRIGVPNKGIATHFPLRFTVKGSPYISAQRKSRILTDIWK"
     gene            8387..9055
                     /locus_tag="U0342_001913"
     CDS             8387..9055
                     /locus_tag="U0342_001913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464454.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class A sortase"
                     /protein_id="HEM2423257.1"
                     /translation="MLKKTIAIIILIIGLLLIFSPFIKNGIVKYMSGHETIEQYKASD
                     IKKNNEKDATFDFESVQLPSMTSVIKGAANYDKDAVVGSIAVPSVDVNLLVFKGTNTA
                     NLLAGATTMRSDQVMGKGNYPLAGHHMRDESMLFGPIMKVKKGDKIYLTDLENLYEYT
                     VTETKTIDETEVSVIDDTKDARITLITCDKPTETTKRFVAVGELEKTEKLTKELENKY
                     FPSK"
     gene            9168..9899
                     /locus_tag="U0342_001914"
     CDS             9168..9899
                     /locus_tag="U0342_001914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464455.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2423258.1"
                     /translation="MKLTVFGHWGGYPLANEGTSSYLLEEAGFKLLIDVGASAVSIMQ
                     NYIDPDDIDAAIISHYHPDHVADVGILQHIRLLSQKKEKPPVLPIYGHKEDERGYSYL
                     EMANVTKAIEYKPDDRLEIGPFKVTFLKTIHPVPCYAMRIEAGDKVFVYTADSAYQDS
                     FIPFSEGADLLVTDTNFFHDLAGKTKVHMASTEVAKIAKEANVKSLLLSHLPEVGDLE
                     VLKQEAAAIYKGEIALASKGFTKTF"
BASE COUNT         3255 a         1768 c         1948 g         2963 t
ORIGIN      
        1 tgcccgtgtt atccccaaaa ataaatttct agcagtcatt gttggctcgc ttattggtgt
       61 atttttccct tcctgtgaat gtggcattgt tcctatcgtt cgtaatttac tggcaaaagg
      121 ggtaccgctt catgctggta ttgccttcat gcttaccgct cctattatca acccagtagt
      181 attattttca acgtatgttg catttggtag tacgtgggaa gttccgttgc tacgtgttgc
      241 gggaagtctt gtagtagctc tcgttgtcgg aaatattatc gcttattttt ataaaggaac
      301 tggactcaaa gagcgctttt taaaatatga agcagctagt gaaaaagtgg ccgttccagc
      361 aacaaatcta gcgcttgctg gtggtccttc tgaaagtacg acaactaatt tccaagtcct
      421 aacaagcgac ggagcactta cagaagacgc tcataaagga cacgcgcacc accatcacgg
      481 tgaggagcac gcgcatacaa aaatgacatt gagtcaaaaa atatggcata ccgtacaaca
      541 cgcagtcgat gaattcttct ctgtaggtaa ataccttgtg tttggggctt taattgccgc
      601 agcgatgcaa acatacatta aaacatccac acttgtttcc ataggtcatg gtccgatttt
      661 atccatctta cttatgatgg ttcttgcctt tgtattgtcc ctttgctctg aagctgatgc
      721 ctttattggc gcttctttcc gtagtgtttt ctccacacaa tccatcgttg catttttagt
      781 gttcggccca atgcttgata ttaaaaatct aatgatgatg ttaggagcat ttaaagcaaa
      841 atttgtctta ttaattgtta ctagtgtaac gattgttgtc tttttatacg ccttagttat
      901 ttaaccgaaa gaaggtgaaa gtatgtttcg cgtttttatt ttatttggat ttggttttta
      961 tttgatgcag ttacatattt ctggtgatat cagtaaatat ataaatatga agtacgctta
     1021 tttatctttt tctgcgatga tagccgcatt tctacttgcg attattcagc tcattatggt
     1081 gtttcgcgat gaagatattg gtgcaaaaac agaacatatg gggcacaccc atgatggcga
     1141 aaataccatt ttgaaaaaaa ttatggtgta tggtttactt tcttacgcct tgattgcagg
     1201 ttttcttttc cccgtcgcaa cacttgattc gaccattgtt tcggcaaagg gatttcattt
     1261 cccaaaaaac aatgcagctg gtgatgaccc atacgctcaa aatcaatttt taagaccaga
     1321 tacgagtggc tattttgggg aaaccgatta tgaaaaaatg atggcgaaag aaaaagcgga
     1381 aatcatcgat caaaatccaa tcaaagtcaa tgatagtaat tacttaatga cgatggaaat
     1441 tctttataat tatccagggg agtttactgg gaaacaaatc gaatttaccg gttttgttta
     1501 taatgatgaa gtcacccaag ataataactt gtttttgttc cgttttggaa taattcactg
     1561 tgttgccgat tctggtgtgt ttggaatgct tgttcaaatg cccgaaaaaa ccgatttgaa
     1621 aaacgataca tggcttacag taaaaggaac catcacccaa gaatattatt ctccgttcaa
     1681 aatgaacatc ccgtctgtac aagtagaaag ctataaagaa gtagcaaaac caaaatcagt
     1741 ttatgtttat cgtaaatatt aaatcgctac ttgcggattt atgcagcttg cgttatcctt
     1801 aaataaagct gtttacgttt tcacgaatga attaaaggat ggaacattga atgaatgatt
     1861 acaaccacta ctttcatttc ccacgagaag aatggcgcaa gctggaagtg agtaaggacc
     1921 aaattttaac tgcagaggaa ctggaagaaa tacgtggttt aaatgaccga atttctttac
     1981 aagacatctc tgaaatctat ttaccactaa taaaactaat tgcgattcaa taccatgaag
     2041 cgatttttat tcatggcgaa aaaatggaat acttaaagaa aaaagaatcg cgtgcaccat
     2101 ttattattgc attagcagga agtgtggctg ttgggaaaag tacgacagcg cgtgttttca
     2161 aattaatgct tgatcgctgg ttctccaaaa ccagacaagt agagcttgtg acgacagacg
     2221 gctttcttta tcctaacaaa gttttagaag agcgcggtat catggacaaa aaaggcttcc
     2281 ctgaaagcta cgaccgcgac cgttttgcca agtttttaac cgacttaaaa gcaaataaag
     2341 aagatgtcga aattccactt tattcgcatt tcacttatga tgttttagac gaaacccgtg
     2401 tgatccataa tccagatatc gtcatcattg aaggaatcaa tgttcttcaa gcagatcaac
     2461 atgagagcct gtttccaagt gacttctttg atttctccgt ttacatggat gccaatgaag
     2521 cggatattaa gaaatggtat ttagaacgtt tcttcatgct tcgcgaaaca gctttccaag
     2581 atgaaagttc ttatttccac ccatatacta aaattagcaa acaagaagca gaaacatttg
     2641 cactcggggt ttgggataca atcaacggcg tcaacttaaa agaaaacatt gagaaaacaa
     2701 aatatcgagc cgacttagtg cttcaaaaag gcacagatca tctcatttca gacatttatt
     2761 tacgcaaata accgaatgca gatagaagga aacttcttga tgcattcggt tttttcttta
     2821 cattggagaa aatccgagta caatagaaag tgagtaatca ctcatttgaa aaagggaggg
     2881 aaagcaatgt cagaaatagc gattaaagtt tctaatttag atgtgaaaat tggaaagaaa
     2941 caaatcttaa ccaatatgac tctcgaaata gaaaagggcg agatatttgg cttaataggg
     3001 ccatccggtg caggaaaaac aacactcgtg aaaaccatca tcggaatgga aaaggcaacg
     3061 aatggcacaa ctgaggtttt aggaaaagca atgccaaatt taccagtcat tagcaaaatt
     3121 ggttacatgg cccaatcaga cgcactttat acggatttaa cagccaaaga aaacttggat
     3181 tttttcgctt cactatattc catcaaaggt gcagccaaaa aagaccgaat gaattatgca
     3241 gccactttag ttaatttaca acaagattta actaaaaagg tgaacaatta ttcaggaggg
     3301 atgaaacgca ggctgtctct ggccatttct gtccttgctg acccagatgt cctaatttta
     3361 gatgagccaa cagtcggtat tgatccagaa ctaagaaaaa cgatttgggc agagctaggc
     3421 gatctaaaag cgaacggtaa atgtatcctt gtgacgacac acgtgatgga tgaagccgaa
     3481 aaatgtgata gacttgccat gatcagaaat gggcaaataa tcgctgtagg gaccccacaa
     3541 gagctctcaa gtaaaacgtc atctggtaag ctagaagatg cctttttaga gtttggaggg
     3601 aagcactaat gcgaatattt gccattgtca aacgcatcat taaccaattt cgccgtgata
     3661 aacggacgct tgccctaatg tttcttgcgc cacttttact tatcacactg ctcacttatt
     3721 tattcgaagg tgacacagtg aagccagttg ttggtgtaag cgggctttct gactccatgg
     3781 taaaagaact gaaagcaaat gatttaacca tcaaaactta ctcggaaaat accgatgtaa
     3841 ccgctaaaat taaagatgcc aacctcgacg ctttttttaa acaaaacggt gaaaaactcg
     3901 aagtcaccta tgaaaatagt gaaccaagct tgagtaagga aatcggatta aaactacaaa
     3961 aagcaatgat gacggagcaa caggcacaag tgaaaaagca agcgaaagca accggtgagt
     4021 cacttgctaa agctggtatt gatccaaaca ccattccttc acttacacaa agcccagaaa
     4081 agctcagcat ctcaacaaac tacgtatacg gagataaagg tactaccttt ttcgacacaa
     4141 tcagcccgat tttcattggc tttttcgtat tctttttcgt atttctgatt gccggtattt
     4201 ctttcttgag agaacgaaca acaggcacgc ttgaaagact tatggcaacc ccaattaaac
     4261 gtatcgaact tgaattaggg tatttaatag gttttggtat tttcgcgtta ctacagtcta
     4321 tcttagtcgc agttttctcc atccaagtac ttggcatgat gcaaaacggc tccttattct
     4381 atgtgttact tattacatta acactcggca tggtttctct agcgctagga attttacttt
     4441 ctactttcgc aaataatgaa tttcaaatcg ttcaatttat tcctatcgtt attgtgccac
     4501 aagtcttatt ttgtgggatt ttcccgctcg atggcatggc agattggctc gtgtggattg
     4561 cccatattat gccgctttac tacggcgcaa atgcactaac atccattatg gtaaaaggag
     4621 aaggattcgc ttcgtttgca actgatttct acattttact aggatttgtg ctcgtatttg
     4681 ttatattaaa tatttttgct ttgaaaaaat accgcaaagt ttaaatgaaa caggaggaga
     4741 taagacgtgg atgcagaagg agacattatc cgtcaaatgc ttgatttaac ggaaaaagaa
     4801 acaaagatga gtgaaaagca gcgccgaatt gtcgctgctt ccatcgaact gtttgcagaa
     4861 aaaggctatg ccggaacttc aacgaatgaa attgctaaaa aagctggggt cgcagaaggc
     4921 accattttta gacactataa aacgaaaaaa gatttactaa tggcgattac catgccaacg
     4981 cttatcggtg gtgtgatacc atttttggca caaagctttg tcaaagaagt gtttgaaagt
     5041 gagtatccag attttcagtc attcattcgg gaaatcatcg ttaatcgctt tgattttgcc
     5101 aaagagaatg gtaaggtcat caaaatttac tttatggaac tgttttatca cgatgagtta
     5161 agaatacagt tttcagaaat ttttatgaca catgtcaaag ggcaatttga tcaaatgatt
     5221 gattattata aagagcgcgg ggaaattgtt gatatgccga acagcacgat tatgcgcgct
     5281 cttatcacga atattgtcgg atttatgcta acaaggtttg tcgtgatgcc cgacgtggag
     5341 tgggatgatg ccaaagaaat tgatgatacg gtggcgtata ttatgagagg tttaggtaag
     5401 taaaaaagag tccagatatt ctggactctt tttctcattt atcggatgaa tcagttgatt
     5461 ttttcttatt gtaattgtat ttacttggat ccactttttt gaaaccatca ggagcataga
     5521 aacgtaacaa gtcaccttgt agtacagaat ctgaaagctc taattctttt gctacttttt
     5581 cttttgtttc tttcatttct tttgtttccg tagcaattgg ttccccagtt tgttgattat
     5641 acatgttacc accaatcatt gaataggtag gagttatata atcaccattt cggaatggaa
     5701 caagttgttt atggtcttta gaaagtaaat ctgtaccaaa ttgtaagtac tctttattat
     5761 caacaccaag taagtgaagt aatgtcggaa gtaagtcaac ttgaccaccg tattgttctt
     5821 gaacgccacc ttgaacacca ggaacgtgaa tcattaaagg aacacgctgc gcttgggcat
     5881 tttcaaaagt gttgtaatct ttaccaagaa tttttgtcat tgcttcttca tggttgtcgg
     5941 aaataccata atggtcaccg tacatgataa tgacagagtt atcgtaaaga ccagatttct
     6001 tcaagtaatc aacaaagctc ttcacagatt cgtctaaata acgagctgtt tggaaatacg
     6061 tatctacaga tgaatcgcct gttgttgccg gagcaatcga agcatctttc tcatcaattg
     6121 gataagggaa gtggttcgta agcgtaataa atttcgtgta gaacggttgt tgtaatgacg
     6181 atagatattc ttcggattcc ttaaagaatg gtttatcttt aagtccgtag ttagaaacat
     6241 ctgcttcgtt catatcgtag taactagcat caaagaaatt atcgtaacca aattgtttat
     6301 aaatttcatc acgattccag aagctcttat agttaccgtg gaatacagca cttgtatagc
     6361 cttgttggcc taaaatagca gatgcagatt cataagtgtt ttgcccttta gttgtaaagg
     6421 cagaaccttg aggcaagccg taaagcgagt tctcaagtaa catttcggag tcagctgttt
     6481 taccttgacc tgtttggtgg aagaagtttg taaagcttag tgtattttgg tctttaaaga
     6541 aagagttaat aaacggcgtt acttcttctc catttaattt gtaatttact aggaattgtt
     6601 ggaaactctc taaatggata taaatgacgt ttttgccttt tgctttacca aaatattccg
     6661 gatttggcgc ggcatatttg gatttggtat agtttaagac ttctgtaaca tcactactat
     6721 cagcaagtgc acgctgtgtg gatgattcgg tacttttcac tgcgtcatag atttgatagt
     6781 tagtcatacc aagatattta acaatataat ttctatcaaa cgttcttgtt agaagttgtg
     6841 gacgatcaat ttctgcaagt cccaagtttc caaagaacat tgcgatacca agcgtcagaa
     6901 ccccaactac ttttcttgca cgaatacggg ctgttttgtt tggttttaca aagcggaaag
     6961 caagtagtgc aattaaaatg ataatatccg cgaagtaaat aatatcgtgc cagctgagta
     7021 acgctgtgat actacttccc atgtcgccca tgttttgcat ttgttttgcg tttagattcg
     7081 gaagtgtaat gaaatcacta aagaatcgat aatatacaat atttgcgtaa agaataaaac
     7141 tcattaaaaa gtcaatgacg ataatccaaa tgaatgaacg acgtccctta gcaaagagcg
     7201 caagacccat aaagaaaatg gccccactta atggattaat gaacagcaaa atttgctgca
     7261 tcagattttc tatgccaagt ttaaattcaa gttgatatgc aatatacgtt tttagccaat
     7321 aaagaatgac ggctagaaca aaaaatccat aattcttgct taaaaacgtt tggattttta
     7381 ttttccaatc cttcatgaaa cacctctcct acacactatt tactcgtttt aattgttatt
     7441 ttgaaatgaa aaaaagaagc tgtattatgt aacaagaaac attttcatac agcacccact
     7501 ttaacataat tctaacacaa gattaataaa aggcaagtta taacctatac gtctgaagta
     7561 ggattttagg ggaaataggc tgatataact agtcaaaaaa gaaccatttg gaatagaatt
     7621 ctgctagaat aaaaagaaaa cattgaggta tgaaatggaa gcgattatta cgaaagaatt
     7681 ttttgaagat aagacaacaa tcgaattagc gagagatatc ttgggtatgc gtctagtaca
     7741 tcaaacggat gagggaattc tatctgggct aatagtggaa acagaagcgt acctcggggc
     7801 aacagatatg gctgcacata gttttcaaaa cctccgaacg aaacgaacag aagtcatgtt
     7861 ttcatcgccg ggaagaatct acatgtacca aatgcatcgc caagtgttgc ttaattttat
     7921 aaccatgcca aaaggaatcc cagaagccat tctaatacga gccatcgaac ctgacgaaca
     7981 agctaaacaa caaatggtac aaaatcgtca cggaaaaact ggttacgaac ttaccaatgg
     8041 ccccggaaaa ttaacgcaag ctttaggatt aagtatgcaa gattacggga aaactctttt
     8101 tgatagtaac atttggttag aagaggcaaa attgccgcat ttaatagaag caactaatcg
     8161 aataggggtg ccaaacaaag gaattgcaac tcattttcca ctcagattta ctgttaaagg
     8221 cagcccatat atttcagctc aacgaaaaag tcggattctt accgatattt ggaagtgact
     8281 ttacaatttt gtcacaggta gagaaaatag ttttatccag acactgattt tctttgcttc
     8341 ataagaagag ctactatata atgaaatagt tacaaggagg aattatatgt taaagaaaac
     8401 aattgcaata attattttaa tcattgggct actattaatt ttttccccat tcatcaaaaa
     8461 cggcattgtg aaatacatga gtggtcatga aacaatcgag caatataaag catcagatat
     8521 aaagaaaaat aatgaaaaag acgctacatt tgattttgaa agtgttcagc taccctctat
     8581 gacatctgtt attaaaggag cagcaaatta cgacaaagat gcagtcgttg gttctatcgc
     8641 agttccatct gtagacgtta acctcttagt tttcaaagga acaaatacag ctaatttact
     8701 ggcgggtgca acaaccatgc gttctgatca agtcatgggt aagggtaact atccgctggc
     8761 aggtcaccat atgcgtgatg aatctatgtt gtttggtcct ataatgaaag tcaaaaaagg
     8821 cgacaagatt tatctaacag atcttgagaa tttatacgaa tacactgtta cggaaacaaa
     8881 aacgattgat gaaacagaag taagtgtgat tgacgatacg aaagacgcta gaattacact
     8941 tattacatgt gataaaccaa ctgaaacaac aaaacggttt gtcgcggttg gtgaactaga
     9001 aaaaacggaa aagctaacaa aagaactaga gaataaatat ttccctagta aataatgaga
     9061 aaagacagcg gattttctaa gctgtctttt tttctggata atttctcctt ttattataaa
     9121 tgttgtatca tataaaggag gtttattttg agaaaggaag tgcagtgatg aaactaaccg
     9181 tttttggaca ttggggtggc tatccattag caaatgaagg cacatctagt tatttgctgg
     9241 aagaagctgg atttaagcta ttaattgatg ttggcgcaag tgctgtttct attatgcaaa
     9301 actatattga tcctgatgat attgatgcgg caataatttc tcattaccat ccagaccatg
     9361 tagcagatgt agggattttg cagcacattc gcctattatc acaaaaaaag gaaaaaccgc
     9421 cagtattgcc gatatatgga cataaagaag atgaacgcgg ttattcttat ttagaaatgg
     9481 caaatgtaac aaaagcaatc gaatataaac cagatgatag acttgaaatc ggaccgttta
     9541 aagtaacttt cttaaagacg atccatccgg taccttgcta tgctatgaga atagaagcag
     9601 gtgacaaagt tttcgtatac accgcagata gcgcttatca agatagtttt atcccttttt
     9661 cagagggggc agatttatta gtaacagaca ccaatttttt ccatgaccta gccggaaaaa
     9721 caaaagtgca tatggctagc acggaagttg caaaaattgc caaagaagcc aatgtgaaat
     9781 cattactcct cagtcattta cccgaagttg gcgatttaga agttctaaaa caagaagcag
     9841 cggctattta caaaggagaa attgcacttg cttcaaaagg attcacgaaa acattttaat
     9901 atagaagaaa aggggtagga gtatgtactt tata
//
LOCUS       DASEAA010000096         9918 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.096, whole genome shotgun sequence.
ACCESSION   DASEAA010000096 DASEAA010000000
VERSION     DASEAA010000096.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9918)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9918)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9918
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.096"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..212
                     /locus_tag="U0342_001915"
     CDS             <1..212
                     /locus_tag="U0342_001915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423259.1"
                     /translation="ETVFLCLLLSENAVENQAFAIDFGKIEDIDVAFKNTKRYKLFPS
                     CTDTFKENYFLGSFSNMKSAFFLSK"
     gene            458..4012
                     /gene="rpoB"
                     /locus_tag="U0342_001916"
     CDS             458..4012
                     /gene="rpoB"
                     /locus_tag="U0342_001916"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta"
                     /protein_id="HEM2423260.1"
                     /translation="MSGHSGHDVKYGRHRTRRSFARISEVLELPNLIEIQTASYQWFL
                     DEGLREMFRDISPIEDFAGNLSLEFIDYDLGEPKYSVEESKNRDANYAAPLRVKLRLI
                     NKETGEVKDQEVFMGDFPLMTEMGTFIINGAERVIVSQLVRSPGVYFNGKLDKNGKKG
                     FGSTVIPNRGAWLEYETDAKDVVHVRIDRTRKLPVTVLLRALGFGSDQEIIDLIGDND
                     YLRNTLEKDNTDNAEKALLEIYERLRPGEPPTVDNARSLLVSRFFDPKRYDLASVGRY
                     KINKKLHLKNRLFNQTLAETLVDPETGEIIASKGDILDRRNLDQIIPNLENGVGFRTL
                     RPTDGVMEDSVLVQSIKIYAPNDDEKEINIIGNAYIEENVKHITPSDIISSISYFFNL
                     LHGVGDTDDIDHLGNRRLRSVGELLQNQFRIGLSRMERVVRERMSIQDMTTITPQQLI
                     NIRPVVASIKEFFGSSQLSQFMDQTNPLGELTHKRRLSALGPGGLTRERAGYEVRDVH
                     YSHYGRMCPIETPEGPNIGLINSLSSFAKVNKFGFIETPYRRVDPETNRVTDKIDYLT
                     ADEEDNYVVAQANSKLDEQGTFTEEEVMARFRSENLAVEKERIDYMDVSPKQVVSVAT
                     ACIPFLENDDSNRALMGANMQRQAVPLMHPEAPFVGTGMEHVSAKDSGAAVTAKHDGI
                     VEHVEAREIWVRRVSLVDGKEVTGGIDKYTLRKFVRSNQGTCYNQRPNVAEGDRVVKG
                     EILGNGPSMDSGELALGRNVLVAFMTWDGYNYEDAIIMSERLVKDDVYTSIHIEEFES
                     EARDTKLGPEEMTRDIPNVGEDALRDLDERGIIRVGAEVKDNDLLVGKVTPKGVTELT
                     AEERLLHAIFGEKAREVRDTSLRVPHGGGGIVLDVKIFTREAGDELPPGVNQLVRVYI
                     VQKRKIHEGDKMAGRHGNKGVISRILPEEDMPFMPDGTPVDIMLNPLGVPSRMNIGQV
                     LELHLGMAARALGIHVATPVFDGANEEDVWSTVEEAGMARDAKTILYDGRSGEAFDNR
                     ISVGVMYMIKLAHMVDDKLHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYG
                     AAYTLQEILTIKSDDVVGRVKTYEAIVKGESVPEPGVPESFKVLIKELQSLGMDVKML
                     SADEEEIEMRDMDDDDFTNQNDAFNIVQPENTAAEKTE"
     gene            4183..7788
                     /gene="rpoC"
                     /locus_tag="U0342_001917"
     CDS             4183..7788
                     /gene="rpoC"
                     /locus_tag="U0342_001917"
                     /EC_number="2.7.7.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase subunit beta'"
                     /protein_id="HEM2423261.1"
                     /translation="MLDVNNFEYMKIGLASPDKIRSWSHGEVKKPETINYRTLKPERD
                     GLFCERIFGPMKDWECSCGKYKRVRYKGVVCDRCGVEVTKSKVRRERMGHIELAAPVS
                     HIWYFKGIPSRMGLVMDMSPRALEEIIYFASYVVTEPGDTPLEKKQLLSEREYRVYRE
                     KYGKGFSAGMGAEAIKKILADIDLEKETNDLKEELKSAQGQRRTRAIRRLEVMEAFRN
                     SGNNPSWMVLDVLPVIPPEIRPMVQLEGGRFATSDLNDLYRRVINRNNRLKRLLDLGA
                     PNIIVQNEKRMLQEAVDALIDNGRRGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGK
                     RVDYSGRSVIVVGPNLKMYQCGLPKEMALELFKPFVMKELVGRGLAHNIKSAKRKIER
                     MAPEIWDVLEEVIREHPVLLNRAPTLHRLGIQAFEPTLVEGRAIRLHPLVCTAYNADF
                     DGDQMAVHVPLSAEAQAEARILMLAAQNILNPKDGKPVVTPSQDMVLGNYYLTLEREN
                     AVGEGTIFKDINEAQLAYQNGYVHLHSRIAVFAGSIPNERFTDEQRNQLLITTVGKLI
                     FNTILPKSFPYINEPTKFNLEIETPAKYFVDTTTDVRAHIAAQELIDPFKKKILGNII
                     AEVFKKFHITETSKMLDRMKDLGFKISTKAGMTVGIADILTLEEKHEILEKAHDTVEK
                     ITKSFRRGLITDDERYERVIGVWNAAKDEIQGKLILSLDRLNPIFMMQDSGARGNISN
                     FTQLAGMRGLMADPSGRIVELPITSNFREGLTVLEYFISTHGARKGLTDTALKTADSG
                     YLTRRLVDVAQDVIIREDDCGTDRGLTIKAIREGTEIIEPLEERLEGRYSRKTIRHPE
                     TKEVIARENDLITEAIATQIVDAGIEEVTIRSAFTCNTKHGVCKKCYGKNLATGTEVE
                     VGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEIFEARNPKGQAIIT
                     EVGGEVVSIEEGRDRQQEITIQGTDDRRSYNIPYTARLRVEEGTIVERGEALTEGSVD
                     PKALIRVRDVLSVQEYLLAEVQKVYRMQGVEIGDKHVEVMVRQMLRKIRVMDTGDTNI
                     LPGTLMDIHTFTEANRDAILSGSQPATGRPVLLGITKASLETDSFLSAASFQETTRVL
                     TDAAIKGKRDELLGLKENVILGKLVPAGTGIGRYRKLKSEVIKETAEVTDEITNI"
     gene            7864..8409
                     /locus_tag="U0342_001918"
     CDS             7864..8409
                     /locus_tag="U0342_001918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2423262.1"
                     /translation="MITHVIWDMGETLNTVPNTRYDHHPLDTYPEVVLRENAEETLEK
                     VKQLGFKQAILSNTATSDTEVIKRVLTNFGIIDYFDFIYASNSELQPGKMEKPDKTIF
                     DFTLNALQIDKTEAVMVGNTFESDIIGANRAGIHAIWLQNPEVCLQDERLPLVAPPFV
                     IPVWDLADVPEALLLLKKISA"
     gene            8475..>9918
                     /locus_tag="U0342_001919"
     CDS             8475..>9918
                     /locus_tag="U0342_001919"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2423263.1"
                     /translation="MTEVKKQFPKGFLWGGATAANQVEGAYDVDGKGLSTADMVKFIP
                     KEERTQDHALDVSKAEIEAIIAGKVEGRFPKRDGVDFYHHYKEDIALFAEMGFKTFRL
                     SLNWARIFPNGDDKEPNEKGLEFYDKVFDELLKYDIEPLVTLSHYETPLNLTLKYNGW
                     ADRRVIGFFTNYAETVFKRYKNKVKYWLTFNEINVISLSAYTGGGVLLEDAKNPLELS
                     YQAGHHQFVASALATKLAHEIIPGSQVGCMLARMATYPATNNPDDILKAQYENQQNLF
                     FTDVHARGEYPSYMNRFFQENDIHIVKEVGDDEILKAHTVDFISFSYYMSLSATASPE
                     GDRSAGNLMGGVKNEYLESSDWGWQIDPKGLRWTLNDLYSRYELPLFIVENGLGAYDT
                     VEEDGKIHDDYRIDYLRKHIEQMKEAIADGVDLIGYTSWGPIDLVSASTSEMSKRYGF
                     IYVDQDDWGKGTLERSRKDSFFWYKKVIETN"
BASE COUNT         3133 a         1966 c         2109 g         2710 t
ORIGIN      
        1 tcgaaactgt ttttttgtgt ttattattaa gcgaaaatgc tgtcgaaaat caagcatttg
       61 caatcgattt tggcaaaata gaagacatag atgtggcttt caaaaataca aaacggtata
      121 aactttttcc gtcttgtact gacactttta aggaaaatta ttttctaggg agtttcagca
      181 atatgaaatc cgctttcttt ttgtctaaat agaatatttt ttgtgcgaaa gttccactta
      241 tgttaactct ggaaatgctt cttggatgcg tgtttgcaag ccaagattag aaacaaaaag
      301 gaaaattttg atgcacggtg tttaagccag tatattttgc acgtagcaaa aaactgctag
      361 cgtcttaaac ctcggatacg gaaggttcca ttgttttcgc aaccataatt aacaagtgtg
      421 cttataaatt ttttaattaa tttgaggggt gaatagtttg tcaggacatt caggacatga
      481 tgtaaaatat ggacggcatc gtacgcgtag aagttttgcg cgaatcagtg aagtacttga
      541 attaccaaac ttaattgaga ttcaaacagc ttcttaccaa tggttcttag atgaagggct
      601 acgtgagatg ttccgcgata tttcgccaat tgaggatttt gcgggtaatt tatctttaga
      661 attcattgat tacgatcttg gagaaccgaa atactcggta gaagaatcta agaaccgtga
      721 tgcaaactat gcggctccac tacgcgtgaa gttgcgccta atcaacaaag aaaccggcga
      781 agtgaaagac caagaagtat ttatgggtga tttcccacta atgactgaaa tgggtacgtt
      841 cattattaat ggggcagaac gtgttatcgt ttcccaatta gttcgttctc caggtgttta
      901 cttcaatgga aaactagaca aaaatggtaa aaaaggcttt ggttctactg tcatccctaa
      961 ccgtggggct tggcttgagt atgaaacaga tgctaaagac gttgtacacg ttcgtattga
     1021 ccgtacacgt aaattaccag taactgtttt acttcgtgca ctaggctttg gttccgatca
     1081 agaaattatt gatttaatcg gggacaatga ctacttgcgc aacacactgg aaaaagacaa
     1141 cactgacaat gctgaaaaag cacttctaga aatttacgaa agattacgtc cgggtgaacc
     1201 cccaacagtt gataacgcta gaagcttact agtttctcgt ttctttgatc caaaacgcta
     1261 cgatcttgca agcgttggac gttataaaat caacaaaaaa ttacatctaa aaaaccgtct
     1321 attcaaccaa acattagcag aaactttagt ggatccagaa actggtgaga ttatcgcttc
     1381 taaaggtgac attttggatc gtcgtaattt agatcaaatt attcctaatt tagaaaacgg
     1441 tgtaggtttc cgcacacttc gtccaactga tggagttatg gaagatagcg tactcgttca
     1501 atctattaaa atctacgcac caaatgatga cgaaaaagaa atcaacatca ttggtaacgc
     1561 gtatattgaa gaaaatgtaa aacacatcac gccttctgat attatttcat ccattagcta
     1621 cttctttaac ttgctacatg gtgttggcga tacagatgac atcgatcacc taggtaatcg
     1681 tcgtcttcgt tctgttggtg aacttttaca aaaccaattc cgtatcggtt tatcccgtat
     1741 ggaacgtgta gttcgtgagc gtatgtctat tcaagatatg actacaatta caccacaaca
     1801 attgattaat attcgcccag tagttgcttc tattaaagaa ttctttggta gctcgcagtt
     1861 atctcagttc atggatcaaa caaatccact tggcgaactt acgcataaac gtcgtctttc
     1921 agcgcttgga cctggtggtt tgacgcgtga acgtgctggt tatgaagtac gtgacgtgca
     1981 ttactctcac tatggtcgta tgtgtccgat tgaaacgcca gagggaccaa acattggttt
     2041 gatcaactcc ctttcttcct ttgcgaaggt aaataaattc ggctttatcg aaacgcctta
     2101 ccgccgcgta gatcctgaaa caaaccgtgt tactgataag attgattatc taactgcgga
     2161 tgaagaggat aattacgtag tagcgcaagc gaactcgaaa ttagacgaac aaggtacttt
     2221 cacagaagaa gaagttatgg ctcgtttccg ttcagaaaac ttagcggtag aaaaagaacg
     2281 tattgactac atggatgtat cgcctaaaca ggttgtatct gttgcgacag catgtattcc
     2341 gttccttgaa aacgatgata gtaaccgtgc gctaatggga gcgaacatgc aacgtcaagc
     2401 agttcctctt atgcaccctg aagctccatt tgttggaaca ggtatggaac acgtatctgc
     2461 aaaagactct ggtgctgctg taactgccaa acatgacggt attgtagaac acgttgaagc
     2521 tcgcgaaatc tgggttcgtc gtgtatctct agtggatggc aaagaagtaa ctggcggaat
     2581 tgataaatat acattacgta aatttgttcg ttctaaccaa ggtacttgtt ataaccaacg
     2641 tccaaacgta gcagaaggtg accgcgttgt taaaggagaa atccttggta acggtccatc
     2701 aatggattcc ggtgaacttg ctcttggtcg taacgtacta gttgcgttca tgacttggga
     2761 tggttataac tacgaggatg cgatcatcat gagtgaacgt cttgtaaaag atgacgttta
     2821 tacttcgatt catattgaag aattcgaatc agaagctcgt gatacaaaac tcggacctga
     2881 agaaatgact cgtgatattc caaacgttgg ggaagatgct ttacgcgacc ttgacgaacg
     2941 tggaattatc cgtgttggtg ctgaagtaaa agacaacgac cttctagttg gtaaagtaac
     3001 accaaaagga gttaccgaat taactgcaga agaacgttta ttacacgcta tctttggtga
     3061 aaaagcacgt gaagttcgcg atacttcatt acgtgtacct catggcggcg gcggaatcgt
     3121 gcttgacgtg aagatcttta cacgtgaagc tggcgacgaa ctaccacctg gtgtaaacca
     3181 attagtacgt gtttatattg tacaaaaacg taaaatccac gaaggcgata aaatggccgg
     3241 acgtcacggt aacaaagggg ttatctcccg tattttacct gaagaagata tgccatttat
     3301 gccagacgga acacctgttg atatcatgct taacccacta ggggtaccat ctcgtatgaa
     3361 tatcggacaa gtacttgagc tacacttagg tatggctgct cgtgctttag gaattcacgt
     3421 tgcaacacca gtatttgatg gtgcgaatga agaagacgtt tggagcacag tggaagaagc
     3481 tggtatggcc cgcgatgcga aaacaattct ttatgacgga cgttctggtg aagcatttga
     3541 taaccgtatc tctgtaggtg taatgtacat gatcaaactt gcccacatgg ttgatgataa
     3601 acttcatgcg cgttcaactg gaccttactc tctagtaacg caacaaccgc ttggtggtaa
     3661 agcacaattt ggtggacaac gttttggtga gatggaagta tgggcactgg aagcttatgg
     3721 tgctgcttat acacttcaag aaatcctaac gattaaatcc gatgacgtgg ttggtcgtgt
     3781 gaaaacttac gaagcgattg ttaaaggcga aagcgttcca gaacctggtg tgccagaatc
     3841 cttcaaagta ctcatcaaag agcttcaaag tcttggaatg gatgttaaaa tgctttccgc
     3901 agacgaagaa gaaatcgaga tgcgtgacat ggatgatgac gactttacta atcaaaatga
     3961 tgccttcaat atcgtacaac cggaaaatac agccgctgaa aagactgagt aattcggttc
     4021 gataattgag actccaaaac aataagaaac aatgatttgt tttttgcaaa atataaaatt
     4081 aagcgatcgc taagacttta cctgaaaagt ctgggaagtg tgcgggaatc cccaagcgct
     4141 tcctaaagcg aatgctccaa actaatttag gaggttgggc acttgttaga tgttaataat
     4201 tttgagtata tgaaaatcgg tctggcatct ccagataaaa ttcgttcatg gtctcatggt
     4261 gaagtaaaaa aacctgaaac catcaactac agaacgctta aacctgaacg tgacggctta
     4321 ttctgtgaaa gaatttttgg accaatgaaa gactgggaat gttcttgtgg taaatacaaa
     4381 cgtgttcgct ataaaggcgt agtttgtgac cgttgtggag tagaagtaac gaaatcaaaa
     4441 gtccgtcgtg aacgtatggg ccatattgaa ctcgcagctc ctgtttctca catctggtac
     4501 ttcaaaggaa ttccaagccg tatgggtctt gttatggata tgtccccacg tgcattagaa
     4561 gaaattatct attttgcatc ttacgtggtt acagaaccag gcgatactcc acttgaaaag
     4621 aaacaacttt tatctgaacg tgaataccgc gtttaccgcg aaaaatatgg taaaggtttc
     4681 tcagctggta tgggcgcaga agctatcaaa aaaatcttag ccgatatcga cttagaaaaa
     4741 gaaacaaatg atttaaaaga agaactaaaa tctgcacaag gtcaacgtcg tactcgtgcg
     4801 attcgtcgtt tggaagttat ggaagctttc cgtaattccg gcaacaaccc aagctggatg
     4861 gtacttgacg tgctaccagt tatcccacca gaaattcgtc caatggtaca acttgaaggt
     4921 ggccgttttg caacaagtga tttgaatgac ttatatcgtc gggtaatcaa ccggaacaac
     4981 cgtttgaaac gccttcttga tctaggtgca ccaaacatta tcgtgcaaaa tgaaaaacgg
     5041 atgctacaag aagctgtcga tgctctaatt gacaacggtc gtcgtggtcg tccagtaaca
     5101 ggtccaggta accgtccgct taaatccctt tctcatatgc ttaaagggaa acaaggtcgt
     5161 ttccgtcaaa acttactagg taaacgtgtc gattattctg gtcgttccgt tatcgtagtt
     5221 ggacctaact taaaaatgta ccaatgtggt cttccaaaag aaatggcact tgaattattc
     5281 aaaccatttg ttatgaaaga actagttgga cgcggtttag cacacaacat taagagcgct
     5341 aaacgtaaaa tcgaacgtat ggctccagaa atctgggacg tattagaaga agttatccgt
     5401 gaacatccgg tattacttaa ccgggcgcct acgcttcaca gacttggtat tcaagcattt
     5461 gaaccaacgc tagttgaagg tcgcgcaatc cgtcttcacc ctcttgtatg tacagcttac
     5521 aacgctgact ttgatggtga ccaaatggcg gttcacgttc ctttatccgc agaagcacaa
     5581 gcagaagcac gtattttaat gcttgcagcg caaaacattt tgaaccctaa agatggtaaa
     5641 ccagttgtaa caccttccca agatatggtg ctaggtaact actaccttac tttagaacgt
     5701 gaaaatgctg tcggtgaagg tactatcttc aaagatatca atgaagcgca acttgcgtat
     5761 caaaacggct atgtacactt acattctcgt attgctgtat ttgctggctc gattccaaac
     5821 gaacgtttca ctgatgaaca acgcaaccaa ttattaatta cgactgttgg taaactgatt
     5881 ttcaacacaa tcttaccaaa atcgttccct tatattaatg aaccaacgaa attcaactta
     5941 gaaatcgaaa caccagctaa atatttcgtt gatactacaa cagatgtgcg tgctcacatt
     6001 gcggcacaag aactaatcga tccattcaaa aagaaaatcc tcggtaacat tatcgcggaa
     6061 gtcttcaaga aattccatat taccgaaact tcaaaaatgc ttgaccgtat gaaagatctt
     6121 ggtttcaaaa tctcgactaa ggccggtatg acagtaggta ttgcggatat cttaacactt
     6181 gaagaaaaac atgaaattct tgaaaaagca catgatacag ttgaaaaaat cactaaatca
     6241 ttccgtcgtg gtctgattac agatgatgaa agatacgaac gcgttatcgg tgtatggaat
     6301 gctgccaaag atgaaatcca aggaaaactg atcttgagtt tggaccgctt aaacccaatc
     6361 ttcatgatgc aagattccgg agctcgtggt aacatttcca actttacaca gctagctggt
     6421 atgcgtggac tgatggctga cccatccgga cgtatcgtag aattgccgat tacatctaac
     6481 ttccgtgaag gtttaacggt cttagagtac ttcatttcta cccatggtgc gcgtaaaggt
     6541 cttaccgata cagcccttaa aacagccgat tccggttacc ttactcgtcg tcttgttgac
     6601 gtggctcaag atgttatcat tcgtgaagac gattgtggca ctgaccgcgg tcttacaatt
     6661 aaggctattc gtgaaggtac tgaaatcatc gaaccacttg aagaacgtct ggaaggtcgt
     6721 tattctcgta aaacaattcg tcacccagaa acaaaagaag ttattgcacg tgaaaatgac
     6781 ttaattacag aagcaattgc cactcaaatc gttgatgctg gtattgaaga agtaactatc
     6841 cgttctgcat tcacatgtaa tacaaaacac ggcgtatgta aaaaatgtta tggtaaaaac
     6901 ttggcaactg gtacagaagt cgaagttgga gaagcagttg gtatcatcgc tgcccaatct
     6961 atcggggaac caggaactca gcttactatg cgtactttcc atacaggtgg ggttgccgga
     7021 gacgatatca cgcaaggtct tccacgtatt caagaaatct ttgaagcacg taatccgaaa
     7081 gggcaagcta tcatcactga agttggcggt gaagttgttt ctatcgaaga aggtcgtgat
     7141 cgtcaacaag aaatcactat ccaaggtaca gatgaccgcc gttcttacaa cattccttac
     7201 actgctcgcc tgcgtgtaga agaaggaact atcgtagaac gtggggaagc tctaactgaa
     7261 ggttctgtgg atcctaaagc cttgattcgt gttcgtgacg tattatccgt tcaagaatat
     7321 ctacttgcag aagtacaaaa agtttaccgt atgcaagggg tagaaattgg cgataaacac
     7381 gttgaagtaa tggttcgtca aatgttacgt aaaatccgcg taatggatac tggtgataca
     7441 aacatcttac caggtacatt aatggatatt catacgttta cagaagccaa ccgcgatgct
     7501 atcttaagtg gtagccaacc agcaacaggt cgtccagttc ttctagggat cacaaaagct
     7561 tcccttgaaa ctgactcctt cttgtctgct gcatcattcc aagaaacaac tcgtgtcttg
     7621 acagatgctg caatcaaagg aaaacgtgac gaacttctag gacttaaaga aaatgttatc
     7681 ctaggtaaac ttgttccagc tggtacaggt attggtcgtt accgcaaact gaaatccgaa
     7741 gttatcaagg aaacagctga agtaactgac gaaatcacaa atatttaatt ttacaaagcc
     7801 aagtgtgccg ttcgcgcgca cttggctttt tttgttatac tctagaaaaa ggagtgaagt
     7861 gatttgatta cacatgttat ttgggatatg ggcgaaacat taaacaccgt accaaacaca
     7921 agatacgacc atcaccctct cgatacttat ccagaagtag tgctacggga aaatgccgaa
     7981 gaaacgcttg aaaaagtgaa acaacttgga ttcaaacaag caatcctcag caacactgca
     8041 acaagtgaca cagaagtaat taagcgcgta ttaactaatt ttggtatcat cgattatttt
     8101 gacttcattt acgcatccaa ttccgagtta caaccaggga aaatggaaaa accagacaaa
     8161 actatttttg atttcacact aaatgccctt caaattgata aaacggaagc ggtcatggtc
     8221 gggaatacat tcgaaagtga tattattggc gcaaatcgtg cgggaatcca tgccatatgg
     8281 ctccaaaatc cagaagtctg cctgcaagat gagcgcctgc ctcttgtcgc gccgccattt
     8341 gttatcccag tttgggactt agctgatgtt cccgaagccc ttttactatt aaagaaaatt
     8401 tctgcttgac ctgtaatgca ttacacagag taaaataaaa aagtagaaga aattagccgg
     8461 aaggggcgaa cgaaatgact gaagtgaaaa aacaatttcc aaaaggattt ttatggggtg
     8521 gagcaactgc tgcgaaccaa gttgaaggcg cttacgatgt agatggtaaa ggcctttcca
     8581 cagcagatat ggtcaaattt attccaaaag aagaacgtac acaagatcat gcattagacg
     8641 tatctaaagc agaaatcgaa gcaattattg cagggaaagt agaaggaaga ttccctaaac
     8701 gtgatggcgt tgatttttat catcactata aagaagacat cgcattattt gccgaaatgg
     8761 gctttaaaac attccgccta tcactaaact gggcgcgtat tttcccgaat ggtgatgaca
     8821 aagagccgaa tgaaaaaggc cttgaatttt atgataaagt gtttgatgaa ttattaaaat
     8881 atgacattga gccacttgtg acactttctc actatgaaac accactaaat cttactttaa
     8941 aatataacgg ctgggctgat cgtcgcgtta tcggattttt cacgaactac gcggaaacag
     9001 ttttcaaacg ttataaaaac aaagtaaaat attggctaac ttttaacgaa atcaatgtta
     9061 tttcacttag cgcatacact ggtgggggcg tgctattaga agacgcgaag aatccacttg
     9121 aactttctta ccaagcagga catcaccaat tcgtagccag tgcacttgca acaaaattgg
     9181 cgcatgaaat tattcctgga tcacaagttg gttgtatgtt agcgcgcatg gcgacttatc
     9241 ctgcgactaa caatccagat gatatcctaa aagcacaata tgaaaatcaa caaaatctat
     9301 ttttcactga tgtccatgct cgcggtgaat atccaagcta catgaaccgt ttcttccaag
     9361 agaacgacat tcacatcgta aaagaagttg gcgacgacga aatcttaaaa gcacacacag
     9421 ttgatttcat ctcattcagc tactacatgt ccctatccgc aacagctagc ccagaaggcg
     9481 accgctctgc tgggaactta atgggtggcg tgaaaaatga atacttggag tcgtccgatt
     9541 ggggttggca aattgaccct aaaggcttac gctggacact aaatgatctt tatagccgct
     9601 acgaattacc acttttcatc gtggaaaatg gcttaggtgc ttatgataca gtagaagaag
     9661 acggcaaaat ccatgatgat taccgaattg actacttgcg caaacatatc gaacaaatga
     9721 aagaagcaat tgctgatggc gtagatttaa ttggatacac aagctgggga cctatcgacc
     9781 tagtaagtgc ctccacaagc gaaatgtcca aacgttacgg cttcatctac gtagaccaag
     9841 atgactgggg caaaggaaca ttagaacgct cccgcaaaga ttcattcttc tggtataaaa
     9901 aagtaattga aacaaatg
//
LOCUS       DASEAA010000097         9900 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.097, whole genome shotgun sequence.
ACCESSION   DASEAA010000097 DASEAA010000000
VERSION     DASEAA010000097.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9900)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9900)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9900
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.097"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            45..266
                     /locus_tag="U0342_001920"
     CDS             45..266
                     /locus_tag="U0342_001920"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464532.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423264.1"
                     /translation="MTKPGKYEALFFPTKDGLLKIHAYGFNPCGSWGEVFATIGDQTI
                     CVKGFNRHKTIVRATKMIISATANRKNEF"
     gene            571..804
                     /locus_tag="U0342_001921"
     CDS             571..804
                     /locus_tag="U0342_001921"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464533.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YkuJ family protein"
                     /protein_id="HEM2423265.1"
                     /translation="MSQLLGIIQRLHAMQEDESAETQARRFEKNGTPVCEVKFFQASN
                     SFEVEIYGDNSKYQFDDIDMTAIEIFETLQENE"
     gene            1006..1458
                     /locus_tag="U0342_001922"
     CDS             1006..1458
                     /locus_tag="U0342_001922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464534.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM2423266.1"
                     /translation="MISNRFGQFIDNELADSMISAEKVAHVQLGNNLEHALLVLTKCG
                     YSVIPVLDFEFKLHGLISAAMITDAILGLERIEFERLEDLKVEDVMQTDFPVIKDFNN
                     NERIVHLLVDHPFVCVVDADHHFEGIVTRRVVLKQVNRYIHLQVEENR"
     gene            1455..2333
                     /locus_tag="U0342_001923"
     CDS             1455..2333
                     /locus_tag="U0342_001923"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464535.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2423267.1"
                     /translation="MIVTEYELLVCLAEELNMRKSAEKLFLSQPALSQRLQTIESRWN
                     TKIFIRTQKGLLLTPEGEAIVRHASSVIEREHTIQEKLEAMEGVVRGTLRIACASVVA
                     QMWLPRVLKAFSRTYPNVQISLVTGWSSEVTQQLAAGNVHIGIVRGSSTWKSVQKPLF
                     NDKLILVDTEITKIEEVFQTNRPFIQFRSDSNYYQVIQDYWQRNFGKMPRQAMLMDQM
                     ETSRQMALNGIGFAILPEVTMIGYTDKINKIPLTEKDGSILSRETNLLTYEQSLSLPQ
                     VKAFLEITDKFLEQVK"
     gene            2381..3091
                     /gene="dapD"
                     /locus_tag="U0342_001924"
     CDS             2381..3091
                     /gene="dapD"
                     /locus_tag="U0342_001924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464536.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3,4,5-tetrahydropyridine-2,6-dicarboxylate
                     N-acetyltransferase"
                     /protein_id="HEM2423268.1"
                     /translation="MEQMDAHQIISFIQNSKKATPVKVYLKGDLEKIDFPSDVKTFIT
                     GNAGTIFGEWAVVEPFLEANKANIEDYVIENDRRNSAIPLLDMKNINARIEPGAVIRD
                     QVTIGDNAVIMMGASINIGSVIGDGTMIDMNVVLGGRATVGKNCHIGAGSVLAGVVEP
                     PSAQPVVVEDNVVVGANVVVLEGVRIGEGAVVAAGAIVTKDVAPGTVVAGIPARELKK
                     LDAKTASKTEIMQELRQL"
     gene            3155..4270
                     /locus_tag="U0342_001925"
     CDS             3155..4270
                     /locus_tag="U0342_001925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetyldiaminopimelate deacetylase"
                     /protein_id="HEM2423269.1"
                     /translation="MLNEFIAIRRELHQIPETGYKELKTQAYLLDYISKLPSEHLEVK
                     KWRTGILVLVKGTNPEKTIGYRTDIDALPITEETGLPFASKHPGNMHACGHDLHMSIA
                     LGVLTHFASKPAKDNLLFVFQPAEEGPGGAKPIMESAEFAEWRPDSIYGLHIAPEYKV
                     GEIAIKPGLLFANTSELFISFKGKGGHAAYPHLANDMVVAASAFVGQMQTIISRNIDP
                     MDSAVITIGRIHGGEIQNVIAETAYLDGTIRTLSPETMEIVWTRLKQLAKGWEEAYQC
                     EVEFHPGSDYYQVDNDPVETEAFIHFLEEQYPESYVPARSAMTGEDFGYFLSEIKGFM
                     FWLGVDSEYSLHHAKLSPKEEAIPFAIDVLIHFLESK"
     gene            complement(4314..5159)
                     /locus_tag="U0342_001926"
     CDS             complement(4314..5159)
                     /locus_tag="U0342_001926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464538.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mechanosensitive ion channel family protein"
                     /protein_id="HEM2423270.1"
                     /translation="MNLLKKWFSSIDWDQFWNHIISVGIKIAILIALYFIFRVVGNKI
                     IRSFFRKYRQQQAVSVGRADTLESLISNFYGYVLFFTFAILLLQNFMDVTAIIASAGV
                     ASLAIAFGAQGLVSDVVTGFFILLERQLDVGDTITIGLVNGTVEALGLRTTQVRDFDG
                     TLHFIPNRQIMVVSNHSRGNMRVMVDIQISPHEDPEKAIKIIGEVCDVAAKENKNIVE
                     PPVVLGVQNIDATNMIIRVVGKAVNGEQYSVQRDLLKDIREALAENEIELPLNFVSTF
                     GPNNN"
     gene            5531..6724
                     /locus_tag="U0342_001927"
     CDS             5531..6724
                     /locus_tag="U0342_001927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464539.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine betaine/L-proline ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2423271.1"
                     /translation="MSKIKVEELTKIFGKKASKASSLLSQGKSKTEILKETGATIGVN
                     KASFSVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTSGKIWLDGKELSSLNKKELLEV
                     RRKSMSMVFQNFGLFPNRTINRNVEYGLEIQGMDKEEREKNAAESLALVGLAGYGEQY
                     PSQLSGGMQQRVGLARALANNPDILLMDEAFSALDPLNRKDMQDQLLDLQDKMKKTII
                     FITHDLDEALRIGDHIMIMRDGSVVQTGSPEEILAHPANEYVEKFIEDVDRSKVYTAS
                     NVMIRPEIVNFEKDGPRVALKRMREAGTSSVFVVKRNRELVGIVHAAEVSKLVKENIT
                     SLETALHRDVPTTGLDTPLAEIMDTISTTTIPIAVTEDGKLKGIIIRGSVLAALSGNE
                     VNVNA"
     gene            6717..7565
                     /locus_tag="U0342_001928"
     CDS             6717..7565
                     /locus_tag="U0342_001928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="proline/glycine betaine ABC transporter
                     permease"
                     /protein_id="HEM2423272.1"
                     /translation="MPNIPTIPLASWIDKLVDGLTQFEGFFNVITNIIGGIVDAFQWV
                     FDLVPPWLFIILLVFGTFWVNRKGKKWGLIIFEVVGLLLIWNLDFWRDMTQTLTLVLT
                     SSLIALVIGVPLGIWMAKSNIVESIFKPVLDFMQTMPAFVYLIPAVAFFGIGMVPGVV
                     ASVIFAMPPTVRMTNLGIRQVSTELVEAADSFGSTPWQKLWKVQLPMAKSTMMAGINQ
                     SIMLALSMVVIASMIGAMGLGTRVYFAVGRNDAGGGFVAGIAIVIVAIILDRLTQAFN
                     KKAKSE"
     gene            7579..8481
                     /locus_tag="U0342_001929"
     CDS             7579..8481
                     /locus_tag="U0342_001929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464541.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine/betaine ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2423273.1"
                     /translation="MLKKLITTAVLAMLIFTLAACGTTLAPYDAKKDLGEQINYTITG
                     IDAGAGIMLATQNAIKDYHLDDDNWQLQTSSTAAMTSTLQKAMKDKRPIVVTGWTPHW
                     MFTKFDLKFLDDPKNVYGNAENIHTIVRKGLKEDKPSAYQVLDNFFWTAEDMSEVMLE
                     VNDGVDPEEAAKKWIKNNPEKVAKWTDGVEKVDGDEIKLTYVAWDSEIASTNVVAEAL
                     KQVGYKPTIQAMEIQPMWASVATDAADGMVAAWLPNTSGIYYKDYKGKFEDLGPNLKG
                     AKIGLAVPKYMTNINSIEDLKTSK"
     gene            8596..9087
                     /locus_tag="U0342_001930"
     CDS             8596..9087
                     /locus_tag="U0342_001930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucose transporter subunit IIA"
                     /protein_id="HEM2423274.1"
                     /translation="MFKKFLKKSKQEVLFAHVTGQVIALEDVPDPVFNQKMMGEGIAI
                     KPETGTIVAPIDGKIIQLAETKHAFGIRTDMGQEILVHIGLETVSLNGEGFNVLVSVG
                     DKVKVGDPIVEADFDFIEKNAASTVVPMVITNSSEGKYDFDFHAVTKAEAGKTEVITT
                     NLK"
     gene            9199..9894
                     /locus_tag="U0342_001931"
     CDS             9199..9894
                     /locus_tag="U0342_001931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper homeostasis protein CutC"
                     /protein_id="HEM2423275.1"
                     /translation="MLEVIVQNPRDAYLAEKYGANRMEVVSAISEGGLTPSYGAIKEI
                     VRASKLPAMMMIRPHSFSFVYDKAARIVMERDIELAKEVGVQGIVYGGITENGEIDQA
                     LLEKVIEWKGDLDLTFHRALEATKDIEASYQVLRTYGKDINQLLTSGGTANALDSLPR
                     LKRWIQDSEAQPDSFQILVGSGVKPENIATFQATLNHSDYHVGSAAREANDFSKDILK
                     EKIDILQQQINKD"
BASE COUNT         3279 a         1681 c         2090 g         2850 t
ORIGIN      
        1 ttcagttaga aatgattact tcaatgcgga aggggccacc ggatatgact aaaccaggta
       61 aatacgaagc tctctttttt ccaacaaaag atggcttgct aaaaatacat gcttatggct
      121 ttaatccctg tggttcatgg ggcgaagtat ttgcaacaat tggtgatcaa acaatatgcg
      181 ttaaaggttt caatcgccac aaaaccatcg tacgagcgac aaaaatgatt atcagtgcta
      241 ctgctaatcg gaaaaatgaa ttttaattat caaagactgt aggaaggtta atcccttttt
      301 atagtctttt ttttggataa aataacggca aagtagaaca aatcatgtct tttaggttaa
      361 tttaaaataa tttctttttc tgaatatttc cagaaccctt gcgttatacg tgcggtttgc
      421 gataaaattt ggtagtatag tgaaagaaat aagatatggc gaaaaaacca gatatgagga
      481 aatatgtaaa aaagcattgc cacgcgcgta taatagcaag gtatgccaat ttttgcacgt
      541 cagatggtgg atttgagagg agagtgtaag atgtctcagt tattgggaat tattcaacgt
      601 ttacatgcaa tgcaagaaga tgagtctgct gaaacacaag caagacgttt tgaaaaaaat
      661 ggtacgcccg tgtgcgaagt aaagtttttt caagcttcta actcatttga agtagaaatc
      721 tacggcgaca atagtaaata tcaattcgat gatattgata tgactgctat cgaaattttt
      781 gaaacgctac aagaaaacga ataacatggt aaagatcgga taagccggtg gtttacttag
      841 ggggctgtga atttatattc acagcttttt ttgttttcaa gcactaaatg aaagaaatta
      901 gaccaaatag tatggtagaa taggagatgg aaaagtttcg atttatttta aaaagttgaa
      961 agaaacttcg tagagcttga aaataaagga agaggaagat tctaaatgat ctcaaataga
     1021 tttggacaat ttattgataa tgaactagct gattcgatga tttccgctga aaaggttgct
     1081 catgtacagc ttggtaataa tttagaacat gcattacttg ttttaactaa atgtggttat
     1141 tcagttattc ctgtactaga ctttgaattt aaactccatg gattaataag tgcagcaatg
     1201 attacggatg ccattcttgg actcgaacgt atcgaatttg aacgattaga agacttaaaa
     1261 gtagaggatg tcatgcaaac ggatttccca gtaatcaaag attttaacaa taacgaacga
     1321 attgtgcact tacttgtgga ccatcctttt gtatgtgttg tagatgctga ccaccatttt
     1381 gaagggatag taacaagacg tgttgtttta aaacaagtca atcgttatat tcatttgcag
     1441 gtggaggaaa atagatgatt gtaacagaat atgaattact tgtttgttta gcagaagagc
     1501 ttaatatgcg taaaagtgcg gaaaaactat ttttaagtca accggcctta tcgcaacgct
     1561 tacaaacgat tgaaagtaga tggaatacca aaatttttat tcgtacacaa aaaggcttac
     1621 tgcttacacc agaaggagaa gctattgttc gtcatgcgtc tagtgtcatt gaacgagagc
     1681 acactattca agaaaaactc gaagcgatgg aaggcgttgt ccgcggaaca ttacgaattg
     1741 cttgtgcaag cgtagtggcg caaatgtggc ttcctcgggt tctgaaagca ttttcaagaa
     1801 cgtaccctaa tgtgcaaatt tcacttgtaa ctggctggag cagtgaagtt acgcaacaac
     1861 tcgctgctgg aaatgtccat atcggcattg tccgtggaag ctccacatgg aaaagtgttc
     1921 aaaaaccgtt atttaatgac aaattaattt tagtagacac agaaattacc aaaattgaag
     1981 aagttttcca aactaatcga ccatttattc aatttcgcag tgattcgaat tattaccaag
     2041 ttattcaaga ctactggcaa cgaaatttcg gaaaaatgcc acgccaagca atgcttatgg
     2101 atcagatgga aacctctaga caaatggcct taaatggtat tggttttgca attttaccgg
     2161 aagtgacgat gataggctac acagataaaa tcaacaaaat tcccttaacg gaaaaagatg
     2221 gctcgatttt aagccgggaa accaacttgc tgacctatga acagtcactc agtttaccac
     2281 aagtgaaggc gtttttagaa ataacagata aattccttga acaagttaaa tagctatggc
     2341 aaaatagaaa acagaacgta tcggaagggg acaaaaattc atggaacaaa tggatgcaca
     2401 tcaaattatt tcttttattc aaaatagcaa gaaagcaaca cctgtaaaag tttaccttaa
     2461 aggggactta gaaaaaattg atttccctag tgatgttaaa actttcatta ctggaaatgc
     2521 gggaactatt tttggagaat gggcagttgt tgagccattt ttagaagcaa ataaagcgaa
     2581 tattgaagat tatgttatcg aaaatgatcg tcgtaactcg gctattcctt tgttagatat
     2641 gaaaaatatt aacgcacgta ttgagccagg cgcagttatt cgcgaccaag taactattgg
     2701 tgataatgct gtaattatga tgggagcaag cattaatatt ggttctgtta tcggtgacgg
     2761 tacgatgatt gatatgaatg ttgttctagg cgggcgcgca acggttggta aaaattgcca
     2821 tatcggtgca ggttctgtgc ttgctggcgt agtggaacca ccatccgcac aaccagttgt
     2881 cgtagaagat aatgttgttg taggcgccaa tgtggttgtt ttagaaggtg tacgtattgg
     2941 agaaggcgca gtcgtagcag ctggcgcaat cgttacaaaa gacgtagctc ctggaacagt
     3001 tgtggctggg attcctgcac gtgaacttaa aaaattagac gcaaaaacag cttctaaaac
     3061 tgaaatcatg caagaacttc gtcaacttta aaaattaaag ggaactgttt cgtctgttgg
     3121 cgaagcagtc cttttttaga aggagagaat cgctgtgtta aatgaattta ttgccattcg
     3181 acgagagtta caccaaattc ctgaaacagg ttataaagag cttaaaaccc aagcctattt
     3241 attagactat attagcaaat taccgagtga acatttagaa gtgaaaaaat ggcgtacggg
     3301 gattttggtt ttagtaaaag gaactaatcc agaaaaaaca attggttatc gtaccgatat
     3361 tgatgcgttg ccaattacag aagaaactgg gctgcctttt gcatcaaaac atcctggcaa
     3421 tatgcatgct tgtgggcacg atttacatat gagtatcgcg cttggtgtat tgacgcattt
     3481 tgcgagtaaa ccagccaaag ataatttgct tttcgttttc cagcctgccg aagaaggtcc
     3541 aggtggtgca aaacccatca tggaaagcgc tgaatttgcc gagtggcgac cggatagcat
     3601 ttatgggctt catatcgcac cagaatacaa agtcggagaa attgcaatta agccaggttt
     3661 actttttgcg aatacatcgg aactttttat ttcgtttaaa ggaaaaggtg gacacgcggc
     3721 gtatcctcat ttggcgaatg atatggttgt cgcagcaagt gcgtttgttg ggcaaatgca
     3781 aacgattata agtcggaata ttgatccaat ggatagtgca gttattacga ttggccgaat
     3841 tcatggcgga gaaattcaaa atgtcattgc ggaaactgct tatttagatg gaaccattcg
     3901 aacgctttcc cctgaaacaa tggagattgt ttggactcgt ttgaaacagc tagcgaaagg
     3961 ctgggaagaa gcttaccaat gcgaagttga atttcatcct ggctcggatt attatcaagt
     4021 ggacaatgat ccagttgaaa cagaagcatt catccacttt ttggaagaac aatatccaga
     4081 aagttatgtg ccagctcgtt cggcgatgac tggagaagat tttggttact ttttatccga
     4141 aattaaaggg tttatgtttt ggttaggcgt ggattccgag tacagtttgc atcatgcgaa
     4201 acttagtcca aaagaagaag ctattccatt tgcaattgat gtattaatcc actttttgga
     4261 aagtaaataa aaagacgtca attcgttctc aaaaggagcg aattggcgtc tttttaatta
     4321 ttatttggtc cgaaggtgct gacaaaatta agtggtaact cgatttcgtt ttctgcgagt
     4381 gcttcgcgaa tatctttgag taagtcacgt tgaacagaat actgctcgcc gttcactgct
     4441 ttaccgacta cgcggataat catgtttgtt gcgtcaatgt tttgcacacc taatacaaca
     4501 gggggctcaa cgatattttt attttctttt gcagctacgt cacaaacctc accgataatt
     4561 ttaattgctt tttccggatc ttcatgtgga ctaatttgaa tgtccaccat cacacgcata
     4621 ttaccgcgcg aatgattact aacgaccata atttgcctgt taggaatgaa atgaagcgtg
     4681 ccatcaaaat cacgtacctg tgttgttcta agtccaagtg cttctactgt tccattaact
     4741 agtccaatgg taatcgtatc accaacatca agttgacgtt caagtaaaat aaaaaatcca
     4801 gtcacaacgt cactaacaag tccttgcgca ccaaaggcaa tagccaaact cgccacccca
     4861 gcacttgcaa taatcgctgt aacatccata aagttctgta ataataaaat cgcaaaagtg
     4921 aagaataaaa catagccgta aaaattagaa atcaagcttt ctaacgtgtc cgcgcgccca
     4981 acagaaactg cttgttgttg ccgatatttg cggaagaaac tacggataat tttattccca
     5041 accacgcgga aaataaaata aagagcaatt aaaatggcga tttttattcc tactgaaata
     5101 atatgattcc aaaattggtc ccagtcaata gaactgaacc actttttgag taaattcatc
     5161 ttctggtcca catcctttga aagttctcca tccatttcat ctcccccttc ctaaatgaaa
     5221 tgtccttttc tattctaaca aatattttat aaaaatgctg tttttaaaat aaattatccc
     5281 cagaaaatgc gcttttttcg tgaaaaatcc tcctttttta caaaaaaaat taaaaaactg
     5341 tcagccgctg ttgttgtaag atggaggcgc tttctaaaat gtgcaaaata gcgcaaacca
     5401 aactgtatga tgtgaaactg agccaaaact tgtgtacaat gataaatgtt attgcttttt
     5461 ttaaaagtga tatgggccga atttttgcct aataaataat tcaatctaaa aaaagaaagg
     5521 ggattttatt ttgagcaaga ttaaagtaga agagctaacg aagatttttg gaaaaaaggc
     5581 ttctaaagca tcttctttac tttctcaggg gaaatcgaaa acagagattt tgaaagaaac
     5641 aggggcgact attggtgtta ataaagcatc ttttagcgta gaagaaggag aaattttcgt
     5701 tattatgggg ctttcaggta gtgggaagtc gactttggta cgacttttaa accgtctaat
     5761 tgagcctacg agcggaaaaa tttggcttga cggaaaagaa ctatctagtc taaataaaaa
     5821 agaacttttg gaagttagaa gaaaaagcat gagtatggtc ttccaaaact ttggtttatt
     5881 tccgaataga acgattaatc gtaacgtaga atacggcctt gaaattcaag gaatggacaa
     5941 agaagagcgc gagaaaaatg cagcagaatc gcttgcactt gttggtttag ctggttacgg
     6001 cgaacaatat ccttcgcaac tttctggtgg gatgcagcaa cgtgtagggc ttgcgagagc
     6061 acttgctaac aatccagata ttttactcat ggatgaagct ttctctgcac ttgacccact
     6121 taacagaaaa gatatgcaag atcaattact agatttacaa gataaaatga agaaaacaat
     6181 catctttatt acccatgatt tggatgaggc actacgtatt ggtgaccaca ttatgattat
     6241 gcgtgatggc tctgtcgttc aaacaggttc cccggaagaa attctggcac atccagcaaa
     6301 tgaatacgtt gaaaaattca ttgaagatgt agaccgttcc aaagtttata cagcgagcaa
     6361 cgtaatgata cgtccagaaa tcgttaattt tgaaaaagat ggtcctcgtg ttgcgcttaa
     6421 acggatgcgt gaggctggaa cttccagtgt attcgttgtt aaacgtaatc gtgagctggt
     6481 tggtattgtc catgcagcgg aagtttctaa actagtaaaa gaaaatatta cttcactaga
     6541 aacagcttta catcgtgatg tacctacaac tggcctagat acgccacttg cagaaatcat
     6601 ggatactatc tcgacaacaa cgattccgat tgctgtaacc gaagatggaa aattaaaagg
     6661 aattatcatt cgcggatccg ttctggccgc actttctgga aacgaggtga acgttaatgc
     6721 ctaatattcc aacgattcca ttagctagtt ggattgacaa attagtggat ggcttaacgc
     6781 aatttgaagg attttttaat gtaattacaa atatcattgg cgggattgtt gatgcattcc
     6841 aatgggtgtt cgatttagtt ccaccgtggt tatttattat tttacttgta tttggcacat
     6901 tttgggtaaa ccgtaaaggc aaaaaatggg gtttaattat ctttgaagtt gtcggtttac
     6961 tgttaatttg gaacttagat ttctggcgtg atatgacaca aacattaacg ctcgttctga
     7021 caagtagttt aattgcgctt gttattgggg ttccacttgg tatttggatg gcgaaaagca
     7081 atattgttga aagtatcttc aaaccggtac tcgattttat gcaaactatg ccagccttcg
     7141 tttacttaat tcctgccgta gcatttttcg gaattggaat ggttccaggg gttgtggctt
     7201 ctgttatttt cgcaatgcct ccaactgttc gtatgactaa tctaggtatt cgccaagttt
     7261 caacagagct tgtagaagca gccgattcgt tcggttcaac accttggcaa aaactttgga
     7321 aagtacagct accaatggcg aaatcaacca tgatggcggg tattaaccaa agtatcatgt
     7381 tagcactttc catggtcgta attgcttcaa tgatcggtgc aatgggactt ggaacacgtg
     7441 tttacttcgc agtaggacgt aacgacgctg gtggcggatt tgtagctggg attgcgattg
     7501 ttatcgtagc aatcatccta gaccgtctga cacaagcttt caataaaaaa gcgaaatcag
     7561 aatgaggagg agagtagatt gctaaaaaaa ttaatcacca ccgcagtttt ggctatgctt
     7621 attttcactt tagcagcctg cggaacaacc cttgctcctt atgacgcgaa aaaagattta
     7681 ggcgaacaaa tcaattatac aatcacagga attgatgctg gagcaggaat tatgcttgca
     7741 acacaaaatg cgattaaaga ttaccattta gatgatgata attggcaatt acaaacaagt
     7801 tctaccgcgg cgatgacaag tacacttcaa aaagcgatga aagataagcg cccgattgtt
     7861 gtgactggtt ggaccccgca ctggatgttt acaaaatttg atttgaaatt tttggatgat
     7921 cccaaaaatg tttatggtaa tgcagaaaat atccacacca ttgtacgtaa aggcttaaaa
     7981 gaagataaac cttccgctta ccaagtgcta gataatttct tctggactgc ggaagatatg
     8041 tctgaagtaa tgcttgaagt taatgacggt gtagatccag aagaagccgc taaaaaatgg
     8101 attaaaaata atccagaaaa agtagcaaaa tggacggatg gcgtggaaaa agtagatggc
     8161 gatgaaatca agttaactta tgtagcttgg gattctgaaa ttgcctctac aaacgttgtc
     8221 gcagaagcat taaaacaagt tggctacaaa ccaacgattc aagcaatgga aattcaaccg
     8281 atgtgggcgt ccgttgctac ggatgcagct gatggtatgg ttgctgcatg gcttccaaat
     8341 acttccggaa tctactacaa agattataaa ggaaaatttg aagatttagg accaaactta
     8401 aaaggtgcta aaatcggtct agcagttcca aaatacatga caaacattaa ttccattgaa
     8461 gatttaaaaa caagcaaata aacgtttaaa aaggcatgaa gaaaatcaag tgatgcttga
     8521 tagtttctcc gtgccttttt ttctctataa gggtaaaata gtagttgatt catgaaattg
     8581 ctaggaggaa gatgcatgtt taaaaaattt ttaaaaaaat cgaaacaaga agtactattc
     8641 gctcacgtaa ctgggcaagt tattgcatta gaagatgttc cagatccagt ttttaatcaa
     8701 aaaatgatgg gagaaggcat tgcaatcaaa ccagaaactg gtaccattgt cgctccaata
     8761 gacgggaaaa ttattcaatt ggcagaaaca aaacatgctt ttggcattcg tacggatatg
     8821 ggacaagaaa ttcttgtaca tatcggctta gaaaccgtat ccttaaatgg agaagggttc
     8881 aacgttttag tcagtgtagg agataaagta aaagtaggcg atcctattgt agaagctgac
     8941 tttgatttta ttgaaaaaaa tgctgcaagt actgttgtac caatggttat aacgaatagc
     9001 tcagaaggta aatatgattt tgatttccat gctgtaacta aggcagaagc aggaaaaacc
     9061 gaagtcatta caactaattt aaaataatga aacaaaatcc gtgaaaaggt aattttcttt
     9121 tcatggattt ttttgtattc aagcacgtca taaaagggta gaatgaaggt aattagtaat
     9181 taaaaggagc ggaataatat gttagaagtg atagttcaaa atccaagaga cgcttactta
     9241 gcggaaaaat acggcgcgaa tagaatggaa gtagtttcag caataagcga aggcggtttg
     9301 actccaagtt atggtgctat taaagaaatc gtacgtgcct ctaagttacc agcgatgatg
     9361 atgattcgac cacatagttt ttcttttgtc tatgataagg cagccagaat agtcatggaa
     9421 cgagatattg agcttgcaaa agaggttggt gtgcaaggga ttgtttatgg tggtataaca
     9481 gaaaatggag aaatcgatca agctcttctc gaaaaagtaa tagaatggaa aggtgattta
     9541 gacttaactt tccaccgggc gctggaagca actaaagata tcgaagcgag ttaccaagtt
     9601 ttacgtacat atgggaaaga catcaaccaa ttattaactt caggtggtac agcaaacgca
     9661 cttgactctt tgccacgcct aaaacgctgg attcaagata gcgaagcaca gccagattca
     9721 ttccaaattt tagttggaag tggcgtcaaa ccagaaaata ttgcgacctt ccaagcgaca
     9781 ttaaatcata gcgactacca tgtaggaagt gcggctagag aagccaatga tttttccaaa
     9841 gacattttaa aagaaaaaat cgatatttta cagcaacaaa taaacaaaga ttgattcttc
//
LOCUS       DASEAA010000098         9837 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.098, whole genome shotgun sequence.
ACCESSION   DASEAA010000098 DASEAA010000000
VERSION     DASEAA010000098.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9837)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9837)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9837
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.098"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            1..3276
                     /locus_tag="U0342_001932"
     CDS             1..3276
                     /locus_tag="U0342_001932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate-binding protein"
                     /protein_id="HEM2423276.1"
                     /translation="MKRKGKKSSLIFILTILIFSCLSGFGTNVFAMDGEYHSPYGDDD
                     LYTVQPTERSPRDPKAGEDVTLNITTWPIEDGQNVWVEWTKNGVAQENVTAAYDYNSG
                     NNTYWKADLGKFEKGDEITYTTKGSTDGGTAYESGPFTFYVTDWEYVQDVSSVVDNGD
                     SITLNMTATAGEFTPKLYLSFEDLDTLRMELSPTGKETGHAGKTGYTVDDGADKVTVT
                     TEDLRVEIQKSPYRMEVYQADGTLLTSEYTTANSLGWLTDGKNVINQYQNNFMTPSDE
                     AFYGFGERYDTINQRGKDVETYVYNEYQDQAQTERTYLAVPFFVSANKYGMYVNSDFH
                     SQFQMASKVEDKYSFVLDNDGDMTNMLDYYVISGKDQNDIVNNYTDITGKTTLLPKWA
                     FGLWMSANEWDRESDVSSALSNAKANDIPATGFVLEQWSDEETYYIWNNATYTAKKNG
                     EAFSYDDFTFNGKWTDPKAMVDSVHDAGMNIVLWQVPVLKDDGTVYEQRDNDEAYMIS
                     QGYSADDGTGAPYRVPASQWFGNGILLDFTNKDAVDWWTSQREYLLTEVGIDGFKTDG
                     GEMVWGRDTTFSNGEKGQEMRNRYPTDYVSSYFDFAKSINPEAVSFSRSGTSGAQKSG
                     IYWSGDQTSTFDSFQASLKAGLSASTSGVSYWAWDMAGFTGDYPTAELYKRATAMAAF
                     APIMQFHSEKSDPSPSEERSPWNAVARTGDETILPTFQKYLYTRMNLLPYIYTAAKDT
                     ADNGKSMMRQMAMDYPEDINARDLDEQYMFGDDLLVAPIVQEGQTEKEVYLPEGEWVD
                     LWNGGIHPGGETISYYADVDTLPVFAKAGAIIPMNMTDGYQLGQNVGNDLKSYDNLTF
                     RVYPSGDSEYSFYDDVNGGEMRDISVSEDFANEKVSVDLPAMADETTMQVFSTEPTSV
                     TIDGADVAKADTLDAFNEATTGYYYDTVQNLTYVKAAAKDAKQAIVLNGVNHAPYEAE
                     FAHLTNVSTASDHAGYTGTGFVAGFDAEKEAVEFDVDAVDGASDYTMEVRYSAGVEDA
                     TRTVYINGKKQQITLPKTADWDTWSTIEVPVTLQAGNNQVVFDFEADDTAGINFDHVV
                     FKK"
     gene            3337..4281
                     /locus_tag="U0342_001933"
     CDS             3337..4281
                     /locus_tag="U0342_001933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo2445 family class 3 internalin"
                     /protein_id="HEM2423277.1"
                     /translation="MKKIIGLAFIAFCCILFAPTIKAQADTVPLPAPIIEAFPVEAIA
                     EAIAGELDKDSVNDTITQADLDTMTLIPLPSLGLTGEDLSVLNNEVFTNAIELAIWSN
                     NIGELPDLSDALPALENIEANGANITLFPDANYPNLTNVDLSQNNFGFNIPKFVGMEG
                     LVSINMEDAGLSGYVAEDIWMNMPNLDSLLLNENHLISIPEDIFLSEQLSTHSFANQT
                     ATYPHTTIKQGENLEVFVPFIYQALDFIAPSRHDLIIIKDNGRTLYEPPYPTYDGSYM
                     YKIETAGLQPGEHLLEISLGYNSGEYTGWYDFPVTITE"
     gene            4296..8228
                     /locus_tag="U0342_001934"
     CDS             4296..8228
                     /locus_tag="U0342_001934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5110 domain-containing protein"
                     /protein_id="HEM2423278.1"
                     /translation="MKKGMKQVCVSMAVVPLVWLNLGITQPLQVEVKAEETKEKEVKK
                     EANTGAAKQLSKEEYAKLSAEEGLGNVLEATVTDNVITLKIDNGDEAEDDYLEISPLA
                     NNLLKVNLRPRNIENSPSTPMIDPNATFTAIGATIDLESDPMIISTDECTLEIAKEPA
                     RMTFKDKNGKTLLSESADGGIFDGGVRFKRGASDHVYGAYGISFSDGDLGMERDNTAA
                     DSNKTAQAGQQGNAGGPFMWSTAGYGLLVDSDGGYPYSVSDEEKLEFYYGDTVVEGRR
                     YVKENVEMYLMSGEPEEIMSSYADVTGHTPMMPKWSLGFSNFEWGTNETEFRENINTY
                     RAKGIPIDSFAFDYDWKFYGDPTYGGDYGEFAWNTENFPSAKDTTLKSDMDALGVKMI
                     GITKPRVVTNLEDGTATQQGKDAEANGYWYPGQSAYEDYAFPVTVRSIDPYNEDERNW
                     WWSHSEDALDKGIVGWWNDETDKVSSNGADYWFGNFTTGFTSEAMYEGQRDYTNERVW
                     QTGRTFYPGAQRYSTSTWSGDIGVQWKKGEVIDWANGMQEQPSTMLSTINLGQTKWGM
                     DTGGFNANSGQVLNPDPELYSRWMEFSSLVPVFRTHGNQNQQRQPWFYGGTAEEVAKS
                     SMTWRYSMIPYMYAYERQAYDSGVGLVQPLTFDNPTDENVVNLTDEWMFGDGLLVAPV
                     LEEGAGSRDIYLPAGTWIDYNRGDVYEGNQTISYEVNDDDWTDVPMFVKQGAIMPMQQ
                     PQNYVGESAVKTIYLDTFASDKETSFTHYDDDGKSFDYEKDTYLKQKMTTSKTADTST
                     FTIGAKEGSYKADTENYIVKLHGNAAESVQVNGADSKVYDDLSALETADGSGYAVGSD
                     VYGAVTYVKVPAQADADTVITTSGSASVVQTGTYEMETGSNFADTVADKPVAEKTYVD
                     GYDKDGAGTTIYANVKDSGDYNVDLTYKNASADNQSLSIFVNGDYVKQTTLKPNTDWS
                     VQSEALPLSAGKNSISYKVVTDTGDKADQVSLDKVNIGFTPTVAKVEAEEADLAGTLK
                     VANDHWFYSGEGFVGGFGAAGDEIKFEVDVPADGEYVLNTRTANGTGMPQTLDLYTNG
                     DYNSRVTFPSEGENWNIWSDTEKAVNLKAGTNKITFLRDGETTGNVNIDRILVSAEPI
                     NSPVQSEVNLLDNGGFERDAAATTNWVESHPDGQDKAYGVDSGSGVNPPESPAFGKQS
                     AYFYLPGAYKQTLAQQIAVPVNNANYDVEAWVKVSNDDAAKAQMTVNNYDSSDGKTID
                     LVADDVWHYVTMKDVKVTTGNINTSFQMDSPGGTSIHIDNVRVMPSAE"
     gene            8279..9244
                     /locus_tag="U0342_001935"
     CDS             8279..9244
                     /locus_tag="U0342_001935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731283.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423279.1"
                     /translation="MKNLFRLFLVFSIVIIGVVSFQAIDASANETDVITQDDVDAVTS
                     LGLGYFTNYLTDEDLQMLGNAYFTNVNNIMIYPTQTMFTGFPDLPTLPKLDTLRAEGN
                     LSSEVLPENITVPDYQNYPELKYLDLSNRTIVGGLPNFSNIPKLETLLMSSCGLASED
                     VPDFTNLKNLQKVNFQTNQYRTEMTDFTYLDSLVSMDLSYNYLNVLPPTIVDKVIVLG
                     QIGTLPDQNVVFGEDTNITLPVYTQLDDLGRISGFQEVWIRDSNEKEIYNVAKVDYDE
                     VTKQIIVPTNNLDKGEYTIGIDFNGIEPYIEEGEVMNYSVKITIN"
     gene            9360..9729
                     /gene="ssrA"
                     /locus_tag="U0342_001936"
     tmRNA           9360..9729
                     /gene="ssrA"
                     /locus_tag="U0342_001936"
                     /product="transfer-messenger RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00023"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00023"
BASE COUNT         3260 a         1665 c         2222 g         2690 t
ORIGIN      
        1 atgaagcgaa agggaaagaa atctagttta attttcattt tgaccatact aatatttagt
       61 tgtttaagtg gatttgggac aaacgttttc gcgatggatg gtgaatatca ctcaccatat
      121 ggagatgatg atttatatac tgtccaacca acagaacgtt ctcctagaga tcccaaagct
      181 ggtgaagatg tgacattaaa tattactacc tggccaattg aagatggaca aaatgtttgg
      241 gtagaatgga ctaaaaacgg ggtagcacaa gagaatgtta cagcagctta tgattataat
      301 agcgggaaca atacttactg gaaagcagat ttaggaaaat ttgaaaaagg cgatgaaatc
      361 acttatacaa caaaaggctc tactgacgga ggaactgctt atgaaagtgg tccgtttaca
      421 ttttacgtga cagactggga gtatgtgcaa gatgttagta gcgttgtaga taatggggat
      481 tctattacat taaatatgac agccactgca ggtgaattca ctccaaaatt atatctttca
      541 tttgaggatt tagatacgct tcgtatggag ctatcaccaa ccggtaaaga aactggacat
      601 gctggaaaaa ctggttacac agtagatgat ggtgcagata aagtaacagt tacaacggag
      661 gatttacgag tagaaattca aaaatctcct taccgcatgg aagtgtacca agcagacgga
      721 actttactta caagcgaata tacaactgcc aacagcttag gttggttaac agatggaaaa
      781 aatgtcatca atcaatatca aaataacttt atgacaccaa gcgacgaagc attttatggt
      841 tttggtgaac gttatgacac gattaaccaa cgaggaaaag atgtagagac atacgtatac
      901 aatgagtatc aagatcaagc gcagacagaa agaacctatt tagcggtacc attttttgta
      961 agtgctaata aatacgggat gtatgtcaat tctgatttcc attcacagtt ccaaatggct
     1021 tctaaagtag aagataaata tagctttgta ttggacaatg atggcgatat gacgaatatg
     1081 cttgattact atgttattag cgggaaagat caaaatgata tcgtaaataa ctacacggat
     1141 ataacaggga aaacgacttt gctaccaaaa tgggcttttg gactttggat gtcagcaaac
     1201 gagtgggata gagaatccga tgtaagctct gcactttcta atgcaaaagc aaatgatatt
     1261 ccagcaacag gttttgtatt agaacaatgg agtgatgaag aaacttacta tatttggaac
     1321 aatgcgacct atacagcaaa gaaaaacggg gaagcattta gctatgacga ttttactttc
     1381 aacgggaaat ggactgatcc taaagctatg gtggatagtg tccatgatgc aggtatgaat
     1441 atcgttttat ggcaagttcc agtattaaaa gatgacggta cagtatatga acaaagagat
     1501 aatgatgaag catacatgat aagccaaggg tatagtgcgg acgatggaac aggggctcct
     1561 taccgagttc cggcatctca gtggtttgga aatgggatat tactagattt cactaataaa
     1621 gatgctgtag attggtggac gtcccagcgt gagtatttat taacagaagt aggtattgac
     1681 ggatttaaga cagatggtgg agaaatggtg tggggacgtg atacaacttt ctctaacggc
     1741 gaaaaaggac aagaaatgag aaaccgttat ccaactgact acgtttcaag ttattttgat
     1801 tttgcgaaaa gtattaatcc agaagcagtt tcgtttagtc gttcaggaac ttctggagca
     1861 caaaaatctg gtatttactg gtcaggagat caaacttcca catttgactc tttccaagct
     1921 tcattaaaag ctggacttag tgcttcaact tcaggtgttt cttactgggc gtgggatatg
     1981 gctggattta cgggagacta tccaacagca gaactatata aacgcgcaac tgcgatggca
     2041 gcttttgcac cgattatgca attccattcg gaaaaatcag atccatcgcc aagtgaagaa
     2101 cgttcacctt ggaatgcagt agccagaaca ggcgacgaaa caattttacc gacattccaa
     2161 aaatatctat acacacgaat gaatttactt ccatatattt atacagcggc aaaagatacg
     2221 gcggataatg gtaaatcgat gatgcgccaa atggccatgg attatccgga agatatcaat
     2281 gcgcgtgatc tagatgaaca gtatatgttc ggtgacgatt tacttgtagc gccaatcgtt
     2341 caagaaggtc aaacagaaaa agaagtttat ctaccagaag gcgaatgggt tgatctttgg
     2401 aacggcggaa ttcatccagg tggcgaaacc atttcgtatt atgcagatgt agatacgctt
     2461 cctgtatttg caaaagctgg agcgattatt ccgatgaata tgacagatgg ctaccaactt
     2521 ggccaaaatg tcggaaacga tttaaaatcc tatgataatt taacattccg agtttatcca
     2581 tctggagata gcgaatatag tttctatgat gatgtaaacg gcggagaaat gcgtgacatc
     2641 agtgtttctg aagactttgc aaatgaaaaa gtttccgtag atcttccagc aatggcggat
     2701 gaaacaacga tgcaagtttt cagtacagaa cctacaagtg taacgattga cggggcagat
     2761 gtagctaaag cggatacgct agatgcattt aacgaagcaa cgacaggtta ctactatgat
     2821 acagtacaaa acttaacata tgtaaaagca gcggcaaaag atgccaaaca agcaatcgta
     2881 ttaaacggtg taaatcatgc accatacgaa gcggaatttg ctcatctgac aaatgtaagt
     2941 actgcaagtg atcacgcggg atatactggt actggttttg tagccggctt tgatgcagaa
     3001 aaagaagcgg tagagtttga tgtagacgca gtggatggtg cttctgatta tacaatggaa
     3061 gttcgttata gtgctggcgt agaagatgca actagaaccg tatatatcaa cggtaaaaaa
     3121 caacaaatta ctttaccgaa aacggctgat tgggatactt ggagcacgat agaagttcca
     3181 gtaaccttgc aagctggtaa taaccaagtt gtatttgatt ttgaagcaga tgatacagcg
     3241 ggaataaatt ttgaccatgt agtatttaag aaataaatcc aataagccac ccttttatgg
     3301 atagagaggg tggctatgtt gaaaggattg aactgaatga aaaaaataat tgggctagca
     3361 tttatagctt tttgttgcat attatttgca ccaactataa aagcacaagc ggatacagtt
     3421 cccttaccag cgcctattat tgaggctttt cctgtggaag cgatagcgga ggcgattgcg
     3481 ggagaactag ataaagattc tgtaaatgac acgattacgc aagcagattt ggatacaatg
     3541 actcttattc ctttgccctc attgggttta acgggggaag acttaagcgt actaaacaat
     3601 gaagtattta caaacgcgat tgaattagcg atttggagta ataatattgg agaactgcct
     3661 gatttatctg atgcgcttcc tgctttagaa aatattgaag caaatggggc taatattact
     3721 ctttttccag atgcaaacta tcctaactta accaatgttg atttgagtca aaataatttt
     3781 ggctttaata ttccaaaatt tgttggaatg gaaggactag taagtattaa tatggaggat
     3841 gctggacttt ctggttatgt agcggaagat atttggatga atatgcctaa cttagattca
     3901 ctacttctta atgagaatca tttaatttct attccggaag atatctttct atcagaacaa
     3961 ttaagtacac attcatttgc taaccagaca gcaacttatc ctcacacaac gattaaacaa
     4021 ggagagaact tggaagtttt tgttcctttt atttaccaag cattagattt tatcgcacca
     4081 agcagacacg atttaattat tattaaggac aatgggagaa cgctttatga accaccttat
     4141 ccgacctatg atggttcata catgtacaag attgaaacag ctggcttaca accgggggag
     4201 catttgctag aaatttcatt aggttataac tctggagaat atacgggttg gtatgatttt
     4261 ccagtaacta ttacagaata aaaaggggcg agatgatgaa aaaaggtatg aaacaagttt
     4321 gtgtcagtat ggctgttgta ccactagttt ggctgaattt agggataact cagccgttac
     4381 aagtggaagt gaaagcggaa gaaacgaaag aaaaagaagt gaaaaaagaa gcgaatacag
     4441 gagccgcgaa gcaacttagc aaagaagaat atgcgaaatt aagtgcggag gaagggcttg
     4501 gaaatgtcct tgaagcaacg gtgactgata atgtcatcac gcttaaaatt gataacgggg
     4561 atgaagcaga agatgattac ttggaaattt ccccgctagc gaataatttg cttaaggtga
     4621 atttgcgacc acgcaatatc gaaaacagtc catctacacc tatgattgat ccgaatgcaa
     4681 ctttcacagc gattggtgcg accattgact tggaatcaga tccgatgata atttcaacag
     4741 atgaatgtac gctagaaatt gctaaagagc cagcacgaat gacttttaaa gataaaaatg
     4801 ggaaaacgtt attgtctgaa tcagcggacg gcgggatttt tgatggcggt gttagattta
     4861 agcgcggcgc ttctgaccat gtttatggtg cctatggaat tagttttagt gacggagacc
     4921 tgggcatgga acgagataat actgctgccg atagtaataa gactgcacaa gcgggtcagc
     4981 aaggtaatgc aggcggtccg ttcatgtggt ctacagcagg atatggctta cttgtagata
     5041 gtgatggcgg gtacccgtat tccgtttcag atgaagaaaa attagagttt tattacggcg
     5101 atacagtggt tgaaggccgt cgctacgtga aagaaaatgt agagatgtat ttaatgtctg
     5161 gtgagcccga agaaattatg tcttcttatg ctgatgtaac agggcatact ccaatgatgc
     5221 caaaatggtc gcttggattc tctaactttg agtggggaac aaatgaaaca gaatttagag
     5281 aaaacattaa tacgtatcgt gcgaaaggga ttccgattga ttccttcgcg tttgattatg
     5341 attggaaatt ctacggagat cctacgtatg gtggcgatta tggcgagttt gcttggaata
     5401 cagaaaactt cccatcagca aaagacacaa cgttaaaatc cgatatggat gcacttggtg
     5461 taaaaatgat tgggattaca aaaccgcgtg tcgtaactaa tttagaagat ggaacagcca
     5521 cgcaacaagg gaaagatgca gaagcaaatg gttactggta tccagggcaa tctgcgtatg
     5581 aagactatgc attccctgta acggtaagaa gtattgaccc atacaacgaa gatgaacgta
     5641 attggtggtg gtcacattct gaggatgccc tagataaagg aattgtcggt tggtggaatg
     5701 atgaaacaga caaagtatct tctaatggag ccgattattg gtttggtaat ttcacaactg
     5761 gatttacatc agaagctatg tatgaaggcc aacgcgacta tacaaatgaa cgtgtttggc
     5821 aaacaggaag aaccttctac ccaggcgcac agcgttattc tacttctact tggtccggcg
     5881 atatcggcgt tcagtggaaa aaaggcgaag ttattgactg ggcaaatggg atgcaagaac
     5941 aacctagtac aatgctttcg acaattaatt taggacagac aaaatggggc atggatacag
     6001 gtggtttcaa tgccaattcg ggccaagtgt taaacccgga cccagaactt tatagtcgtt
     6061 ggatggaatt tagttctcta gttccagttt tccgtacgca tgggaatcaa aatcaacaac
     6121 gtcaaccttg gttctatggt ggcacggcgg aagaagttgc taaaagtagc atgacttggc
     6181 gctactcaat gattccttat atgtatgctt atgaacgtca agcatatgac tctggtgttg
     6241 gtctagttca accacttacg tttgataatc ctactgatga aaatgtggtt aatttaacag
     6301 atgagtggat gtttggtgat ggattacttg tggcacctgt tttagaagaa ggagcgggtt
     6361 ctcgtgatat ttatttacca gcaggaacat ggattgacta caaccgtggc gacgtatacg
     6421 aaggaaatca aacaatcagt tatgaagtga atgatgacga ctggacagat gtgccgatgt
     6481 ttgttaaaca aggtgccatt atgccaatgc aacaaccaca aaactatgtt ggcgaatccg
     6541 cagtcaaaac aatttattta gacacttttg catcagataa agagacatcc tttacacatt
     6601 acgatgacga cggaaaatct tttgattatg aaaaagatac ctatttaaaa caaaaaatga
     6661 ctacttcaaa aactgctgat actagtactt tcacgattgg tgcgaaagaa ggaagttata
     6721 aagcagacac agagaattac attgtaaaac tacacggaaa tgcggctgaa agcgtccaag
     6781 taaatggcgc agatagcaaa gtttatgacg atttatccgc tttagaaact gctgatggta
     6841 gcggatatgc tgtaggtagc gatgtatacg gagcagtaac atacgtaaaa gtaccagctc
     6901 aagctgatgc agatactgtc attacaactt caggttctgc aagtgtcgta caaacaggaa
     6961 catacgaaat ggaaacagga tccaattttg ctgatacagt tgctgataaa ccggttgctg
     7021 aaaaaacgta tgtggatggc tacgataaag acggcgccgg aactactatc tatgcaaatg
     7081 taaaagactc tggtgattat aatgtggacc taacttacaa aaatgcttcc gcagataacc
     7141 aatcattaag tatttttgtc aatggtgatt atgtaaaaca aaccacgcta aaaccaaaca
     7201 ccgattggtc agttcagtcc gaagcattac cactttcagc agggaaaaat agtatttctt
     7261 ataaagtggt aacggacaca ggcgataaag ctgatcaagt atcactagac aaagtaaata
     7321 ttggtttcac accaactgta gcaaaagtcg aagcagaaga agcggacctt gccggcactt
     7381 taaaagtggc gaacgatcac tggttctata gtggagaagg ttttgttggt ggatttggag
     7441 cagcaggaga tgaaatcaag tttgaagtgg atgtaccagc tgacggcgag tacgtactaa
     7501 acacacgaac agcaaatgga actggcatgc cacaaacact cgatttatat acgaatggtg
     7561 actacaactc tcgcgtaact ttcccttccg aaggtgaaaa ctggaatatt tggtcagata
     7621 cagaaaaagc tgtgaactta aaagcaggaa ccaataaaat taccttccta agagacggcg
     7681 aaactactgg taatgtaaat atcgatagaa ttcttgtttc ggctgagcca atcaattcac
     7741 cggtacagtc ggaagtaaat ctactcgata acggcggatt tgagcgggat gcagcggcaa
     7801 cgaccaattg ggtagagtct catcctgatg ggcaagacaa agcatacggc gttgatagtg
     7861 gctcaggtgt caatcctcca gaatcaccag catttggtaa acagagcgct tatttctatt
     7921 tacctggcgc ttacaaacaa acactcgctc aacaaatcgc agttccagtt aataatgcga
     7981 attacgacgt tgaagcatgg gtgaaagtaa gcaacgatga tgcagcaaaa gcacaaatga
     8041 cggttaataa ttatgatagc agcgatggta aaacaattga cttagttgca gatgacgttt
     8101 ggcattatgt aacaatgaag gatgtcaaag taacaacagg caatatcaat actagtttcc
     8161 aaatggattc cccaggagga acgagcattc acattgataa tgtaagagtt atgccatccg
     8221 cagaataata tagaagggcg gggaatttcc tcgtccttta taaattggag gagataggat
     8281 gaaaaatcta tttagactat tcttggtatt tagcatagtt attatcgggg ttgtttcttt
     8341 tcaagcgata gatgcaagtg caaatgagac agatgtaatt acccaagatg atgtggatgc
     8401 ggtgacatct ctagggttgg gttattttac caattacctc acagatgaag atttacaaat
     8461 gctaggaaat gcttatttta ccaatgtaaa taatattatg atttatccta cacaaaccat
     8521 gtttactggc tttcctgatt taccaacctt gcccaaatta gatactttga gagcagaagg
     8581 aaatctatca agcgaggtac tacctgaaaa cattacagtt cccgattatc aaaactaccc
     8641 agaattaaag tatcttgatc ttagtaatcg aactattgtt gggggcttac ctaacttttc
     8701 taatattcct aaattagaaa ccttgttgat gagcagttgt ggactagctt cggaagacgt
     8761 tccagatttt acaaacttga aaaatttgca gaaagtaaat tttcaaacga accaatatag
     8821 aacagaaatg acggatttca cttatttgga cagtttggta agtatggatt taagttataa
     8881 ttatttaaat gtgttgccgc ctactattgt ggataaagta atcgtactag gtcaaatcgg
     8941 aactttgcca gatcaaaatg ttgtttttgg tgaggataca aatatcacgc taccagttta
     9001 tacgcaacta gatgatttag gtagaattag tggttttcaa gaagtttgga ttcgtgattc
     9061 aaatgagaag gaaatttaca acgtggcaaa agtggattac gacgaagtga cgaagcagat
     9121 tattgtgcca acaaataacc ttgataaagg tgaatacact attggaattg attttaatgg
     9181 aatagagcct tatatagaag aaggcgaagt tatgaattac tcagtaaaaa taaccattaa
     9241 ttaatggaaa acttgtgaca tgctaaataa tagttgcgca tttggctatg tcacaagttt
     9301 tttctgtttg taaagcctcg ttttttcctg tataataact actgttagac tttaactctg
     9361 gggatgttac ggattcgaca gggatagttc gagcttgagt tgcgagtcgg ggggatcgtc
     9421 ctcgttatca acgtcaaagc caataataac tggcaaagaa aaacaaaacc tagctttcgc
     9481 tgcctaataa gcagtagcat agctgatcct ccgtgcatcg cccatgtgct acggtaaggg
     9541 tctcactcta agtgggctac actagttaat ctccgtctgg ggttaaatag aagagcttaa
     9601 tcagactagc tgaatggaag cctgttaccg ggccgatgtt tatgcgaaat gctaatacgg
     9661 tgactacgct cgtagatatt taagtgccga tatttctgga cgtgggttcg actcccacca
     9721 tctccatatt ttatggaaac tgagaagtga tacaaactgc ttttttaagc tgtttgtatc
     9781 acttttttat ttggatgcta aacgatggag tcaagaaaat aattacgatt ttagaat
//
LOCUS       DASEAA010000099         9789 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.099, whole genome shotgun sequence.
ACCESSION   DASEAA010000099 DASEAA010000000
VERSION     DASEAA010000099.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9789
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.099"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..688
                     /locus_tag="U0342_001937"
     CDS             <1..688
                     /locus_tag="U0342_001937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2423280.1"
                     /translation="AKLKENGVYVAIATGRGPFMLDEIRKELDINSYICYNGQYVIFE
                     GKEIYAKPLPTESLERLITVASEHEHPIVFSGKDSMRANLPDHDRVTIGMDSIKRDYP
                     KVDANYYKGRDIYQCLLFCDESYDAYYREEFKQYGFLRWHDVSVDVCPADGSKAEGIK
                     QMIKKLGFSMEDTYAFGDGLNDIAMLQAVGTGVAMGNGRDEVKAVADYVTDHVDEDGV
                     YKALEHLKLI"
     gene            complement(736..1764)
                     /locus_tag="U0342_001938"
     CDS             complement(736..1764)
                     /locus_tag="U0342_001938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2423281.1"
                     /translation="MKLEDIARLANVSKSAVSLALNGKAGVSEETRLHILQIVEENNY
                     VPLRNTNKKMKKKSTIRFIACKSPNLITEQYQNLPFFSELLSYLSAEIASYPYDLVIS
                     TFDATTILEELAEAEKEQPTAGLILLGTNLNAEEINRIQQEYPKIVVLDTHHPHISAN
                     FVSINNFLGGYKAADYLLQLAHTKIGYVMGVPRIKNFDERKSGFFARLEEADISVPEQ
                     HVFHLPAMQIQEEVSVKEAIAELQDLPSALFCENDYMAISMIKMLQSLSIKVPEQVSV
                     LGFDNINESKVITPELTTVHVKKRDIAEQTLALLSKQIKADTNFETRQIQVNTSLIER
                     TSCVPFKK"
     gene            2027..3430
                     /locus_tag="U0342_001939"
     CDS             2027..3430
                     /locus_tag="U0342_001939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-fucose/L-arabinose isomerase family protein"
                     /protein_id="HEM2423282.1"
                     /translation="MEAVKIGFAPTRRSIFSAPDAVKYANLTRDKLNELNIEFVDIAE
                     FNEDGLLYDDADMMKIAAKFKKAGIQGLFLPHTNFGTEYVCARLAKELDVPVLLWGPR
                     DERPDENGVRLRDTQCGLFATGKILRRFQVPFTYMTNCRLSDPEFERGIRDFIAVCNT
                     VKTFQNMRILQIGPRPFDFWTTMCNEGELLEKFNIQLAPIPLPELIKEIRSVSSEQIE
                     EVDGTVEYCHGCAIVKIKEVDLRMVAALKVAMKNLATKYGCSAIAIQCWTALQDEIGI
                     MPCAANAMLIDEGIPVVCETDIHGAISCLLIEAANLGRNKSFFADWTVRHPDNENGEL
                     LQHCGLFPFSVAKDKPAIGYPLAFDSPGAVEAEAKGGELTLCRFDGDNGEYSLLLGKA
                     RGIEGPYTKGTYLWIEVDNLKRLEEKIVSGPYIHHVSGIHADVVPILYEACKYIGIKP
                     DLYDPIEEDIKAYLRGE"
     gene            3445..4269
                     /locus_tag="U0342_001940"
     CDS             3445..4269
                     /locus_tag="U0342_001940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase"
                     /protein_id="HEM2423283.1"
                     /translation="MSELKLKSFEIRKDVLKMIYDAKTGHTGSDLSCADILVALYYGV
                     LNVNPENPEALDRDRYVQSKGHAVEVLWAVLADKGFFAKEELADFSAFGSRLIGHPNN
                     KVAGIEMNTGSLGHGLSVSVGMALAAKMDGKSYHTYTLMGDGELAEGSVWEGAMAAAN
                     YKLDNLTAIIDRNSLQISGRTEDVMSVEPLADKWRAFGWDVIEVDGNDPDKLQAIFKT
                     VNVTGKPRLIIAKTIKGYGVKIAENAAKWHHYVPSSEEYEIAMKDLEERMEACRHE"
     gene            4262..5209
                     /locus_tag="U0342_001941"
     CDS             4262..5209
                     /locus_tag="U0342_001941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transketolase family protein"
                     /protein_id="HEM2423284.1"
                     /translation="MNKIANRQVMCEVLMKEATRNDSNLVVLTSDSRGSASLGAFAEK
                     FPERLVETGIAEQNIVGIAAGLAHSGKRAFVASPACFLSMRSIEQVKVDVAYSDTNVK
                     LIGISGGVSYGALGMSHHSLQDIAVTRAIPNLEVILPADRLETEAVFDYLLQSNRPAY
                     VRLGRNAVEDCYAEKPVFQIGKAGTLRKGNDVSILATGEMVRVALDAREELKLKGISA
                     RVLNFSTIKPFDQGAVEAALAETKLLISIEEHSIYGGLGAAVSEVVSSSPTSIRHLIL
                     GIPDEPAIAGTSQEIFDYYGLSATGIVATVMKNLGDERR"
     gene            5206..6669
                     /locus_tag="U0342_001942"
     CDS             5206..6669
                     /locus_tag="U0342_001942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464559.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycerol kinase"
                     /protein_id="HEM2423285.1"
                     /translation="MKKHYQIAIDQSTSGTKVLLFKVGELVDRLDKKHRQLYPKKGWV
                     EHNPIEICQNVRTLIADILAKHDLIPADIERLALTNQRETIVAWDKQTGKPLYNAIVW
                     QCNRTKELCETLKKAGYEKRIKQLTGLKIDSYFSASKMKWLLENSSAVRDAASRNQLA
                     FGTMDAWLLFSLTDDSNYFTDRTNASRTLLYDIEKNDWSDELLELFGVKRAYLPEVKQ
                     SAGSFGSYQEIPIHSVMADSEAALYGQGCDAFGAVKATLGTGCSVMMQIGENRLPEND
                     AILTTLAWDVAGVNQFALEGIIRSCGDTLVFLSEQLELFNDYDTACKRAFQLPCNEGV
                     VLIPGQLGLGSPYWNTDIRAEILGLTREHTKWHIIRAGFTSIAFQIKAVIDQMELMTG
                     QNIKRLQVDGGLTKQHELMQYLADVLKAEVAVSPAEELSAIGAIEIADNKLQNKRTIA
                     KLYQPNITHTHALEDFQEWEKQVKSSILKLQKVRNFK"
     gene            6666..8522
                     /locus_tag="U0342_001943"
     CDS             6666..8522
                     /locus_tag="U0342_001943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS beta-glucoside transporter subunit IIBCA"
                     /protein_id="HEM2423286.1"
                     /translation="MNNSDLAKEVVKLVGGKENILSVIHCVTRLRFKLRDENLAETEK
                     IKALKGVMTVVKSGGQYQVVIGDHVSYVYDEVIRVLGIKPDDAPQDNPEQEHKSIFNK
                     FVELISGIFMPVLGLLAASGILKGFLTAAVTMGLINTSAGVYEVLYAASDALFYFMPI
                     ILGFSAGKVFKTNQYLSAAVGAALVYPTLVDMYSSGAHLTFLHIPVILMNYTMSVIPV
                     ILAIYFMSKLEKVLVKFIPKSLQLIFVPLLLLLIVVPVSLIIIGPVSTYASQLLAKGA
                     LGLYSLSPMIAGFFLAGIWQVAVMFGLHWAFIPIFINNISVLGYDPINAMLYCTVFAQ
                     TGAVLAVMLKTRNQELRSLSITATISGFLGITEPAIYGVNLPYKKPFIMACVGSAFGG
                     AIAGMSAAKMFGGFASGGIFGIPMFINPDGIGWDFWGFLISLVVAFSVALILTYFFGF
                     KDKVEEVVIQTGEKATLDETIYSPLQGEIIALNDVKDEVFSAGIMGAGVAILPASGEI
                     RAPFDGTVLSVFQTKHAIGLISKQGVELLIHVGLDTVNLNGQFFDIEVSESEEIKKGD
                     LLGRFELDAIKKAGYDITTPIIVTNSATLADVITVNLGKSVDNNQKILEAKA"
     gene            8542..>9789
                     /locus_tag="U0342_001944"
     CDS             8542..>9789
                     /locus_tag="U0342_001944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464561.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4038 domain-containing protein"
                     /protein_id="HEM2423287.1"
                     /translation="MLKQSADKRRIEKNDKPFFYLADTVWSAFTNIDLTDWAYYLKVR
                     KEQGFNVLQINILPQWDRSILKKMQEPFGISEGFFDLKAKNEAYFKHAEKMLEMAVNQ
                     GFTPALVLLWCNYIPETWGAKFGTSPLFRKEDIKPYTEMMLEHFEQFEPIYIISGDTD
                     FPTETVAAYYLEALETVSKKAPHALKVLHICGRLKDIPENLQTHPALDLYFYQSGHNS
                     EHQSMAYTLAEHFSQLEPIKPVINSEPCYELMGYSRQKYGRFSREDVRKAAWQSVLSG
                     AIAGISYGAHGIWSWHEEGSTFGSALGEGFVSPFNWRQALHFEGATDYAFLKSFILAN
                     DLTTLAPINLVLNQTPEIRAAETEKVVIIYVPSNVPIYLKGQFASLDDYAIDLEQGKK
                     VSLTKILHEEKTEIQMTPFLKDSL"
BASE COUNT         3113 a         1514 c         2166 g         2996 t
ORIGIN      
        1 tgctaaattg aaagaaaatg gcgtttatgt ggctattgca actggtcgtg gtccatttat
       61 gcttgatgaa atcagaaaag aattagatat taattcttat atttgctaca acggtcaata
      121 tgttattttt gaaggaaaag aaatatacgc taaaccatta ccaacagaat ctttagaacg
      181 attaatcacg gttgcatcgg agcatgagca tccaattgtt ttttcaggaa aagattccat
      241 gcgcgcgaat ttaccggatc acgaccgggt gacaatcgga atggattcta ttaaaagaga
      301 ttatcctaaa gtggatgcta attattataa aggtcgtgac atttatcagt gtttactttt
      361 ctgtgatgag tcgtatgatg cttattaccg agaagaattt aagcagtatg gtttcttgcg
      421 ctggcatgat gtttccgtgg atgtttgtcc agctgacggt tcgaaggcgg aaggcattaa
      481 acaaatgatc aaaaaacttg gcttctcgat ggaagatact tacgcatttg gcgatggttt
      541 gaacgatatt gcaatgcttc aagctgttgg aactggcgtg gcaatgggca acggccgtga
      601 tgaggtaaaa gcggtcgctg actatgttac ggatcatgtg gatgaagatg gggtttataa
      661 agctttagaa catttaaaat taatttaaaa tatcaaaaaa gcctgtgctc aaaaatagag
      721 cacaggcttt tttggttatt ttttgaacgg aacacagcta gttctttcga ttaagcttgt
      781 attcacttgg atttgtctgg tttcaaaatt cgtatcagct ttaatttgtt tggacaaaag
      841 ggcaagtgtt tgttcagcaa tatcacgttt tttaacatga acagtggtta gttctggtgt
      901 aattacttta ctttcattaa tattgtcaaa acctaatacg gaaacttgtt cagggacttt
      961 gatagataga ctttgtagca ttttaatcat gctaatagcc atgtaatcat tttcgcaaaa
     1021 aagagcagag ggtaaatctt gcaattcagc aatggcttct tttaccgaaa cttcctcttg
     1081 gatttgcatt gctggtaaat gaaagacatg ttgttcaggg actgaaatat cggcttcttc
     1141 taaacgagca aaaaagccac ttttccgctc atcaaaattt ttaatgcgtg gtacccccat
     1201 cacataacca atttttgtat gtgctagttg taaaaggtag tcagctgctt tatatccacc
     1261 gagaaaatta ttaatagaga caaagttggc tgagatatgt ggatggtgtg tatctaagac
     1321 aacgatttta ggatattcct gttgtattcg gttaatttct tcagcgttta aattagtgcc
     1381 aagtaaaatc aggcctgctg ttggttgctc tttttctgct tcagcaagtt cttctaatat
     1441 ggttgttgca tcgaaggtag agataaccaa atcatatggg taactagcga tttcagcaga
     1501 taaatagcta agtagctcac tgaaaaaagg taagttctga tattgttcgg taatcaagtt
     1561 aggacttttg catgcgataa aacgaatggt tgatttcttt ttcatttttt tattggtatt
     1621 acgtaacggg acgtaattat tttcctcgac aatttgcaga atatgtaaac gggtttcttc
     1681 acttacgcca gcttttccat tcagcgcaag ggaaacggcc gatttcgaaa cgtttgctaa
     1741 tcgtgcaata tcttccagct tcattattca tttctccttg tttactaaat ttatcttatt
     1801 tagtatatca tgtttagtaa atcaaaacaa aaaatagcat accttcagtc ttctaaacct
     1861 ctcgtttagt tcttttatat aaaataaact aaaacaatat ataaaataat ctttaatttt
     1921 attgacttag tttagaaatg atactataat gcaaataaag aaagcgatta ctgattgctt
     1981 tttatgagaa ctaaaataat tactaaacta aaaaggtggt tagaaggtgg aggcggttaa
     2041 aattgggttt gcgccgacaa ggcgaagtat atttagtgca ccagatgcag tcaaatatgc
     2101 gaatctcaca cgagataaac taaacgaact aaatattgaa tttgtggaca ttgcagaatt
     2161 taatgaagat ggattgcttt atgatgatgc agatatgatg aaaattgcag caaaatttaa
     2221 aaaggctgga atccaaggtt tgtttttacc acatactaat tttggaacgg aatatgtttg
     2281 tgcgagactt gctaaagagt tagatgtacc agtattgctt tggggtccgc gtgacgaacg
     2341 acctgatgaa aatggtgtga gacttcgaga tacgcagtgc ggtttgtttg caactggaaa
     2401 aatcttacgt cggtttcaag taccatttac ttatatgaca aattgccgtc tatctgatcc
     2461 agagtttgaa cgaggaattc gagatttcat tgcagtttgt aatacggtaa aaacatttca
     2521 aaacatgcgg attttacaaa ttggaccacg gccatttgat ttttggacaa cgatgtgtaa
     2581 tgaaggagag ttgctagaaa aattcaatat tcaattagct ccaattccgc ttccagaatt
     2641 aataaaagaa attcgtagcg tatctagcga acaaatagag gaagtggatg gaaccgtcga
     2701 atattgtcac ggttgtgcaa tcgttaaaat taaagaagtt gacttacgaa tggttgctgc
     2761 tcttaaagtt gcgatgaaaa atttagcaac aaaatatggt tgtagtgcga ttgccatcca
     2821 atgttggact gcacttcaag atgaaattgg tattatgcct tgcgctgcaa acgcgatgct
     2881 catagatgaa ggaattccag ttgtttgtga aacagatatt catggagcaa tttcttgttt
     2941 attaatcgaa gcggcaaatt tgggcagaaa taaaagtttt tttgcagatt ggactgttag
     3001 acatccagat aatgagaatg gtgaattgct acaacattgt ggactgtttc cgttttctgt
     3061 tgcaaaagat aaaccggcaa ttggctatcc gttagcattt gattcacctg gtgcagtcga
     3121 agcggaagcg aaaggtggcg aattaacctt atgtcgtttt gatggtgata atggcgaata
     3181 ttccttgtta ctgggtaaag cgagaggtat tgaaggtccg tatacaaaag gaacatatct
     3241 ttggattgag gtagataatt tgaaacgatt agaggaaaaa atcgtttcag gaccatatat
     3301 tcatcatgtt agtggtatcc atgcagatgt ggtccctatt ctttatgaag catgcaaata
     3361 cattggcata aagccagacc tctatgatcc aattgaagaa gatataaaag cttatttacg
     3421 cggtgaatag agaaaggagt aaaaatgagt gaattaaagt taaaatcgtt tgaaattaga
     3481 aaagatgttc taaaaatgat atatgatgca aaaacgggac atactggttc agatttatca
     3541 tgtgcggata ttcttgtggc gctttactat ggtgtgctga atgttaatcc ggaaaatcca
     3601 gaagctttag atcgtgatcg ttacgttcaa agtaaaggac atgctgtcga agttctttgg
     3661 gcagttttag cagataaagg gttttttgca aaagaagaat tggctgattt ctccgcattt
     3721 ggctcgcgtt taatcgggca tccaaataat aaagtagctg gaattgaaat gaacacaggt
     3781 tcgctcggcc atggtttatc tgtttcggtg ggtatggcat tagctgctaa aatggatggg
     3841 aaaagttatc acacctatac actcatgggg gacggggaac ttgcagaggg gtctgtctgg
     3901 gaaggcgcaa tggctgcagc aaattataaa ttagataatt tgactgcgat tattgatcgg
     3961 aattccttac aaatctccgg tcgaacagaa gatgtaatga gtgtagaacc tttggcagat
     4021 aagtggcgcg catttggttg ggatgttatc gaagtggatg gaaatgatcc ggataagcta
     4081 caagcgattt ttaaaacagt taatgtgact ggaaaacctc gtctaattat tgcaaaaacg
     4141 ataaaaggtt atggggttaa aatagctgaa aatgctgcta aatggcatca ttacgtacca
     4201 agcagtgagg aatacgaaat agctatgaaa gatttagagg aaagaatgga ggcatgccgt
     4261 catgaataaa atagcgaacc gccaagtaat gtgtgaagtt ttaatgaaag aagcaactcg
     4321 taacgatagt aatttagttg ttttaacaag tgattcaaga ggatccgctt cactgggggc
     4381 ttttgctgag aaatttccag agcgactagt tgaaactggg attgccgaac aaaatattgt
     4441 tggaattgca gcaggcttag cacatagtgg caagcgagct tttgtcgctt caccagcatg
     4501 ttttctaagt atgcgcagta ttgaacaggt aaaagtagac gtggcttact cagacacgaa
     4561 tgtaaaattg attggtatca gcggtggtgt tagttatggt gcacttggta tgagccatca
     4621 ttcgcttcaa gatattgctg ttactagagc gattcctaat ttagaagtca ttctaccagc
     4681 tgatcgtctg gaaacggaag ctgtttttga ctatttgctt caatcaaatc ggccggcgta
     4741 cgttcgtctt ggcagaaatg cggtagaaga ttgttacgca gaaaaaccag tatttcaaat
     4801 tgggaaagct ggaaccctta ggaaaggaaa cgatgtgtca attttagcaa ctggtgaaat
     4861 ggtacgagtc gcacttgatg caagggaaga attgaagttg aaaggaatca gcgcacgcgt
     4921 attgaatttt tcaacaatca aaccatttga ccagggagca gtagaagcgg cattagctga
     4981 aacaaaacta cttattagca tagaagaaca tagtatttat ggtggcttag gtgcagcagt
     5041 gagtgaagtg gtaagtagtt cgccaacaag tattcgtcat ttgatcttag gaattccaga
     5101 tgaacctgct atcgctggaa cgagccaaga aatctttgat tattatggct tatctgctac
     5161 tggtattgtt gctacagtta tgaaaaacct tggagacgaa agaagatgaa gaaacactat
     5221 caaatcgcta ttgatcaaag cacatctgga acgaaagtat tattgtttaa agtaggtgaa
     5281 cttgtagatc gtttagataa aaagcatcga cagttgtatc cgaagaaagg ctgggtagag
     5341 cataatccaa tcgaaatttg tcaaaatgtc cgtacattaa ttgcggacat attggcaaaa
     5401 catgatttaa ttccagcgga tatcgagcga cttgctttga cgaatcaacg ggaaacaatt
     5461 gtagcttggg ataaacaaac aggcaagcca ctttataatg cgattgtatg gcaatgtaat
     5521 cgaacaaaag aactttgcga aacattaaaa aaagctggtt atgaaaaaag aattaaacag
     5581 cttaccggat tgaaaattga ttcttatttt tctgcttcta aaatgaagtg gttattggaa
     5641 aatagttctg cggtgcggga tgcagcaagt cgtaatcaat tggcatttgg cacaatggat
     5701 gcttggttgt tattttcgct tacggatgat agtaattatt tcacagaccg aacaaacgcc
     5761 agccgcacac tcctttatga tattgaaaaa aatgattggt cagatgagtt actcgaactt
     5821 tttggagtta aacgtgctta tttaccagaa gtgaagcaat ctgctggaag ttttggaagt
     5881 tatcaggaga taccgattca tagtgtgatg gctgattcag aagcggcact ttatggacaa
     5941 ggctgtgatg catttggggc agtgaaggcg acgcttggga caggatgctc tgttatgatg
     6001 caaattggtg agaacagatt acctgaaaac gatgctattt tgacaactct tgcctgggat
     6061 gttgcaggcg tgaaccagtt tgcgttagaa ggaattattc gttcttgtgg agacacattg
     6121 gtttttttat ccgaacaatt agaactattt aatgattacg atacagcttg taagcgagca
     6181 tttcaattac catgcaatga gggtgttgtg ctaattcctg gacaattagg tttaggttcg
     6241 ccttattgga atacagatat acgagcagag attcttggtc tcacacgaga acatacaaaa
     6301 tggcatatta ttcgtgccgg ttttacaagt attgcatttc aaattaaggc tgttattgac
     6361 caaatggagt taatgacagg tcaaaatatt aagcgcttac aagtagacgg tggattaaca
     6421 aagcaacatg agttgatgca atatttagca gatgttttaa aagcagaagt ggcagtcagt
     6481 cccgcggaag aactttcggc aattggtgct attgaaattg ccgacaataa actacaaaat
     6541 aagagaacga tagcaaaatt gtaccaacca aatatcactc atacacatgc tttggaagat
     6601 tttcaagaat gggaaaaaca agtgaaaagc agtattctaa aattacagaa ggtgaggaat
     6661 tttaaatgaa taattcggat cttgcaaaag aggttgtaaa gcttgttggt ggaaaagaaa
     6721 acattttgag tgtaattcac tgtgtgacaa gactacggtt taagttacgt gatgaaaatc
     6781 tagcagaaac agaaaaaatc aaagccttaa aaggtgttat gacggttgtg aaaagtggtg
     6841 gacaatacca agtggttatc ggtgatcatg tgagttatgt ttatgatgag gtcattcgag
     6901 tattagggat taaaccagat gatgcgccgc aagataaccc tgaacaagaa cacaaaagta
     6961 tttttaataa gtttgttgaa ttaatttctg gaatatttat gccagtactg ggtctattgg
     7021 cagcttcagg tattttgaaa ggattcctga cagcggcagt tacaatggga ctaattaata
     7081 cctcagctgg tgtttacgaa gttctttacg cagcaagtga tgccctcttt tactttatgc
     7141 caattatact tgggttttca gcagggaaag tatttaaaac gaatcaatat ctttctgctg
     7201 cggttggtgc agcacttgtt tacccgacgc ttgttgatat gtatagcagc ggagctcatt
     7261 taacatttct acatatccct gtaattttaa tgaattatac aatgtctgtt attcctgtta
     7321 ttttagctat ttactttatg agcaaactag aaaaagtatt agtgaaattt attccgaaaa
     7381 gtttacaatt gatttttgtc cctctcttat tacttttaat tgtggtgcct gtatctctaa
     7441 ttattatcgg acctgtttca acatatgcta gccaactact tgcaaaagga gcattgggac
     7501 tttattcgct tagtccaatg attgcaggat tcttcctggc tggtatttgg caagtggctg
     7561 tcatgttcgg attacactgg gcatttatcc cgattttcat taataatatt tctgttttag
     7621 ggtacgatcc aattaatgct atgctttatt gtactgtatt cgcgcaaact ggtgcggttc
     7681 tggcagtaat gcttaaaacc cgaaaccaag aattacgttc cctttctata acagcaacta
     7741 tttcaggatt tttaggaatc acggaaccag cgatttatgg agtaaacttg ccatataaaa
     7801 aaccatttat tatggcttgc gtaggatcag catttggtgg ggcaattgca gggatgagtg
     7861 ctgcgaaaat gtttggaggc ttcgcgtctg gtgggatttt cggtattccg atgttcatta
     7921 atccagatgg aataggatgg gatttttggg gattcttaat ttctttagta gtggcattca
     7981 gtgtagcgtt gattttaact tatttctttg gatttaaaga taaagttgag gaagttgtga
     8041 ttcaaacagg agaaaaagct acattagacg aaactattta tagcccactt caaggggaaa
     8101 taattgcatt aaatgatgtg aaagatgaag ttttctctgc tggtataatg ggagcaggag
     8161 tagcgattct tccagcgagt ggcgaaattc gtgctccatt tgatggaaca gtacttagtg
     8221 tttttcaaac caagcatgcg atagggttga tttccaaaca aggagtcgag ttgttaattc
     8281 atgttggact tgatacagtt aatctaaatg gtcaattttt tgacattgaa gtgagcgaat
     8341 cagaagaaat aaaaaagggc gatttattag gaagatttga attagatgca attaaaaaag
     8401 ctggctatga tattacaacg cctattattg taactaatag tgccacactc gccgatgtta
     8461 ttacagtgaa ccttggaaaa agcgtagata ataaccaaaa gattttagaa gcaaaggctt
     8521 aatatagaaa gggtgaaaaa aatgttaaaa caaagtgcag acaagcgccg gattgagaaa
     8581 aatgacaaac cttttttcta ccttgcagat actgtttgga gtgcgtttac aaatattgat
     8641 ttaacagatt gggcctacta tttaaaagtc cgaaaagagc aggggtttaa tgtactgcaa
     8701 atcaatattt tgccacaatg ggatcgaagt atactaaaaa aaatgcaaga gccgttcggt
     8761 ataagtgaag gttttttcga tttaaaagct aaaaatgaag cttactttaa acatgcagaa
     8821 aagatgttag aaatggcagt gaatcaaggt tttactccag cgcttgtgtt attgtggtgt
     8881 aattatattc cagagacgtg gggggcaaaa tttggtactt caccactgtt tcgaaaagaa
     8941 gacattaaac cctatacaga aatgatgttg gaacatttcg agcaattcga accaatttat
     9001 atcattagtg gggacacgga ttttccaacg gaaactgtag cagcttatta tttggaagct
     9061 ttagaaaccg tttctaaaaa agcgccacac gcacttaaag ttttgcatat ttgcggtcgt
     9121 ttgaaagata ttccggaaaa tctgcaaaca catccagcac ttgatttgta tttttatcaa
     9181 tctggacata attcggagca ccaatcaatg gcgtatacgt tggcagaaca ctttagtcag
     9241 ttagagccaa tcaagccagt tattaattca gaaccgtgtt acgaattaat gggatatagt
     9301 cgacaaaaat atggtcgttt tagccgagaa gatgtacgaa aagcagcttg gcaaagtgtc
     9361 ttatctggtg ctatagctgg tatttcttat ggggcacatg gtatttggag ttggcatgaa
     9421 gaaggaagta catttggatc agctctaggc gaaggttttg tttctccatt taattggcga
     9481 caagcacttc attttgaagg agctacagat tatgcatttc taaaatcctt tattttggca
     9541 aatgacttaa caacactggc accaataaat ttagttttaa atcaaactcc agaaattcga
     9601 gcagcggaga ccgaaaaagt agttatcatt tatgtgccat caaatgtccc aatttatttg
     9661 aaagggcaat ttgcttcttt ggatgactac gcgattgatt tggagcaagg taaaaaggtc
     9721 agccttacaa aaatacttca tgaagaaaaa acagaaattc agatgactcc ttttttaaaa
     9781 gatagttta
//
LOCUS       DASEAA010000100         9734 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.100, whole genome shotgun sequence.
ACCESSION   DASEAA010000100 DASEAA010000000
VERSION     DASEAA010000100.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9734)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9734)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9734
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.100"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..555)
                     /locus_tag="U0342_001945"
     CDS             complement(<1..555)
                     /locus_tag="U0342_001945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CYTH domain-containing protein"
                     /protein_id="HEM2423288.1"
                     /translation="MVKELEIEFRNLLTKEEYDTLIESFRVKEEDFFEQTNYYLDTAN
                     FGLKERHSALRIRQLETQYQLTLKTPEARGLMETTQILGEDQASAIISGANIPVGPVR
                     DTLKELGINHEDLQVFGSLKTIRAEKDYKKGLLVFDKNFYGSISDFDLEYEVSDYDKG
                     KEVFDKLLKEYQITNQPAENKVARF"
     gene            complement(572..1039)
                     /locus_tag="U0342_001946"
     CDS             complement(572..1039)
                     /locus_tag="U0342_001946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM2423289.1"
                     /translation="MILTLLQNGDYETARTQALAELKNNSDNAELHYYAAWAHDALGK
                     EDAAIPFYEKAIQLGLPVDSRKEAYIGLGSTYRITGQPEKASLLFQTALQEFPDNNAL
                     RTFSVMAKYNQGLEKEALQEALILLTQTTSDADILSYKKAIQFYAQDLDATFH"
     gene            1198..1866
                     /locus_tag="U0342_001947"
     CDS             1198..1866
                     /locus_tag="U0342_001947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464492.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP pyrophosphokinase family protein"
                     /protein_id="HEM2423290.1"
                     /translation="MNHWEDFLAPYKQAVEELKIKLKGMRSQFELENNHSPIEFVTGR
                     VKPVASILDKANQKHIALDHLVEEMQDIAGLRMMCQFVDDIEVVVRLLRQRNDFRIVE
                     ERDYITNKKPSGYRSYHVVIEYPVETIQGEKKILAEIQIRTLAMNFWATIEHSVNYKY
                     QGEFPEAINKRLKRAAEAAFQLDEEMSQIREEIQEAQVYFSQNKDVSKDKKAVHQVMP
                     KKNK"
     gene            1898..2692
                     /locus_tag="U0342_001948"
     CDS             1898..2692
                     /locus_tag="U0342_001948"
                     /EC_number="2.7.1.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464493.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD kinase"
                     /protein_id="HEM2423291.1"
                     /translation="MKYMITSKGDEKSDLLRLNMIAGFGEYDMEYDDVEPEIVISIGG
                     DGTFLSAFHQYEERLDEIAFIGIHTGHLGFYADWRPAEANKLVKLVAKGEYQKVSYPL
                     LKTTVKYGIGKKEATYLALNESTVKSSGGPFVVDVVINDIHFERFRGDGLCMSTPSGT
                     TAYNKSLGGALMHPSIEAMQLTEMASINNRVYRTIGSPLVFPKHHVVSLQPVNDKDFQ
                     ISVDHLSILHRDVQEIRYEVSAKKIHFARFKSFPFWRRVHDSFIED"
     gene            2711..3601
                     /locus_tag="U0342_001949"
     CDS             2711..3601
                     /locus_tag="U0342_001949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM2423292.1"
                     /translation="MFLEWKVETEEDGLLLRTFLKSKHISKQLLTAVKFGAEGKIEVN
                     NKEQNVLYHVKVGDKVRLTFPTEQQNERLLAEYTDLDIIFEDDFLLIINKPAGMASIP
                     SQYHPNGSVANFVKGHYETQGLTNAIHIVTRLDRETSGLMLIAKNRFAHARLSTFLQK
                     GLLKRRYQAFTSGVLVEQKGSIEAPIGRKEVSIMERFVTPEGKYAKTNYEVLARYRAF
                     DHVAIQLETGRTHQIRVHFSYIGHPLIGDDMYGGDTNLLKRQALHSCHLHLVHPLTEK
                     YMAFDLPLPADMEEIIQKSK"
     gene            3679..4467
                     /gene="fabI"
                     /locus_tag="U0342_001950"
     CDS             3679..4467
                     /gene="fabI"
                     /locus_tag="U0342_001950"
                     /EC_number="1.3.1.-"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464495.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="enoyl-ACP reductase FabI"
                     /protein_id="HEM2423293.1"
                     /translation="MNLSLEGKTYVVMGVANKRSIAWAIARSLNEAGAKLVFTYADDR
                     AKKSITELVPSLSEVNQNPLILACDVTSEEAITETFETIKDKTGKLSGLAHCIAFANK
                     DFLTGDYLEVDRKSFLQAHEISAYSFTAVARALKHLEMLTEDASLLTLTYLGGERVVE
                     NYNIMGVAKASLDASVRYLAMDLGAIGVRVNAISAGPIRTVSARGVSGFSDSISLVEE
                     RAPLKRATQAEEVGDTAYYLFSNLSRGVTGEVIHVDSGYHIIGF"
     gene            complement(4495..5769)
                     /gene="dltD"
                     /locus_tag="U0342_001951"
     CDS             complement(4495..5769)
                     /gene="dltD"
                     /locus_tag="U0342_001951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464496.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltD"
                     /protein_id="HEM2423294.1"
                     /translation="MKKKLWMTFGPLLVAFAVFLFVLFGPSSLFSKVSSETVEKSATS
                     MNESVIQGLDIQKKALQEGNYLPIYGSSELSRVDPFHPSVVSKKYNQGYTPFLLGRPG
                     TQSLSHFLDVNALGDDLKGKKVAVVLSPQWFQPKGVSDPSFGANFSPLHAYKFALEDT
                     KNTPERRYAAKRLLSFQVVQSDSTLKKLLENIVAKGPKKPHDPKLLNITGNIELKILE
                     RKDDLESKYIIGSKQDRVNKGLKELPETLDYQKLDELAKETGERSTGNNPFQVKEHYY
                     QKKIKPIEGKLKNSRKDLRYDQSPEFADLQLLMDAFKKAGADVIFINPPINGKWIDYI
                     GMDKQGLDDYYAKTKEQIESQGFRYYSLEEYQNDAFFLEDPIHLSWRGWVKIDQVLAD
                     FVKEPMQTNYKPTPKEYYFKEHPENGPKKDRK"
     gene            complement(5769..6005)
                     /gene="dltC"
                     /locus_tag="U0342_001952"
     CDS             complement(5769..6005)
                     /gene="dltC"
                     /locus_tag="U0342_001952"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464497.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltC"
                     /protein_id="HEM2423295.1"
                     /translation="MAFRENVLEILEEITETDEVVQNTNIKLFDEGLLDSMATVQLLI
                     EIEEKLDITVPVSEFDRDEWATPEMIITQLEALK"
     gene            complement(6031..7215)
                     /gene="dltB"
                     /locus_tag="U0342_001953"
     CDS             complement(6031..7215)
                     /gene="dltB"
                     /locus_tag="U0342_001953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464498.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanyl-lipoteichoic acid biosynthesis protein
                     DltB"
                     /protein_id="HEM2423296.1"
                     /translation="MSLPYGTILYFGVLVLFLIPIIVAGLLGKRLPIYNAFVTLVFLY
                     FMFSASPVQGATFIFFVFWQLALVRLYFHYRQEKKQNHGGVFVIAVILSILPLIISKV
                     VPILGDNVTMVGFLGISYLTFKAAQMIIEIRDNLIKQYNAWDFVNFLLFFPTISSGPI
                     DRFRRFKKDVDNPPSKEAYLALLNRGIFLIFLGFLYKFIIAYLVNKHFVVPLDIAITH
                     HVDTTKSLIGYMYAYSMYLFFDFAGYSAFAVGVSYLLGVQTPMNFNKPFAARNIKEFW
                     NRWHMTLSFWFRDYVFMRFVFWVTKKKWFKSKFTIAYLAYFVNFFIMGVWHGLHWYYI
                     VYGLYQATLIVGFDLFERFNKKHKFYPKNKITYVIGVFITFQFVCFGFLIFSGILDKI
                     NF"
     gene            complement(7212..8744)
                     /gene="dltA"
                     /locus_tag="U0342_001954"
     CDS             complement(7212..8744)
                     /gene="dltA"
                     /locus_tag="U0342_001954"
                     /EC_number="6.1.1.13"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--poly(phosphoribitol) ligase subunit
                     DltA"
                     /protein_id="HEM2423297.1"
                     /translation="MTTSIIERIDAWAEKTPDFPCYEYAGTRLSYKELKRQSDAFGSF
                     LLKNLNTDKEKPIIVYGHMSPLMLVAFLGSIKSGRAYVPVDVSMPVERIEQIKKAADP
                     SLFICTEELPSNLTITGCPVLTQDQLMDALEKHFGEVPDKEACVKNDDNYYIIYTSGS
                     TGNPKGVQISQNNLVSFSNWILQDFSLSQGLRFLNQAPFSFDLSVMDLYPSLLSGGTL
                     VPLDKTITANMKDLYREIPAQNLDVWVSTPSFADLCLLDDNFNQENNPGLIRFLFCGE
                     VLAKKTASELLNRFPDAVIYNTYGPTEATVAVTQVKVTREVIDAYPSLPLGVIKPDMR
                     LHIVDQETGEVLPEGEKGEIVLIGASVSKGYLNEPEKTDQVFFDYKGYQAYRTGDSGI
                     IKDGYLFFQGRLDFQIKLHGYRIELEDIENNLKKVSYIQNCAIIPKMKDEKVDMLVAQ
                     VIPTNHDFEKEYQLSAAIKNELKEFMPAYMIPRKWIYKTEFPLTMNGKIDRKALNSEV
                     NK"
     gene            complement(8781..8927)
                     /locus_tag="U0342_001955"
     CDS             complement(8781..8927)
                     /locus_tag="U0342_001955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003761469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acid D-Ala incorporation-associated
                     protein DltX"
                     /protein_id="HEM2423298.1"
                     /translation="MNKIKLILQHPATIFTMKTFFYLVVLLGLLWFYGFKNPEGAKFI
                     YNEF"
     gene            9135..>9734
                     /gene="rpiA"
                     /locus_tag="U0342_001956"
     CDS             9135..>9734
                     /gene="rpiA"
                     /locus_tag="U0342_001956"
                     /EC_number="5.3.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-5-phosphate isomerase RpiA"
                     /protein_id="HEM2423299.1"
                     /translation="MINQKKIAGEKACEWIKDGMVVGLGTGSTVYYTIEKLGEMVNNG
                     LHITGVATSEETSKQAQNLGIPLKSLNDVAEIDITIDGADEIDTDFQGIKGGGGALLR
                     EKMVASASLKNIWVVSEEKLVRNLGKFPLPIEVIPFGWKQIERTLEKEHVQTILRRQS
                     SGEIYVTNNGNYILDIVNQTFRDAEMWQEKLAQIPGIVEH"
BASE COUNT         3099 a         1598 c         1954 g         3083 t
ORIGIN      
        1 aaatcgtgct actttatttt cggcaggttg attggtgatt tgatattctt taagtagttt
       61 gtcaaaaacc tcttttcctt tatcataatc agacacttca tactctaagt cgaaatctga
      121 tatagaacca taaaaattct tatcaaacac aagtaagcct tttttataat ctttttctgc
      181 gcgaattgtt ttgagtgaac cgaaaacctg taagtcttca tgattgattc ctagttcttt
      241 taacgtgtca cgaactggtc caactggaat atttgctcca gagatgatgg cacttgcttg
      301 gtcctcgcca agaatttgag tagtttccat cagtccacgt gcttctgggg ttttgagtgt
      361 taattggtac tgtgtttcta attgtcgaat tcgaagagcg gaatgacgtt cttttaaccc
      421 gaaatttgct gtgtctaaat aataatttgt ttgctcaaag aaatcttctt ctttcactcg
      481 aaaactttct attaatgtat cgtattcttc tttggttagt aggttacgaa attcgatttc
      541 tagttctttg accatgatag ttcagctccc tttaatgaaa tgtcgcatct aaatcttgcg
      601 cataaaattg aattgctttc ttgtaactta aaatgtctgc atcactcgtt gtttgtgtca
      661 agagtattaa ggcttcctgc aaagcttctt tttctaagcc ttgattgtat ttagccataa
      721 ctgaaaaagt gcgcaaggca ttattatctg gaaattcttg taaagcggtt tggaaaagca
      781 ggctagcttt ttcgggctgc cctgtaatcc ggtaagtact accaaggcct atatatgctt
      841 ctttacgaga atcaactgga agaccgagct gtatggcttt ctcataaaag gggattgcag
      901 catcttcttt accgagtgcg tcatgggccc atgctgcata ataatgaagt tctgcgttat
      961 cggagttgtt ttttaattca gcaagtgctt gagtgcgcgc agtttcgtaa tcgccgtttt
     1021 gaagtaatgt tagaatcatt ttcatcctcc ttttagttgt cgtttgaatg cttcggtttt
     1081 attttaccac gggattgaaa aaaaggttac tttaagcaag gtggattaac tgcttttgtg
     1141 ttaaaataaa actgatgttg cataaattta atcatgaata tacttgaggt gagcgatttg
     1201 aatcattggg aagacttttt agcgccatac aaacaggctg tggaagaact taaaattaaa
     1261 cttaaaggaa tgcgttcaca atttgagctt gaaaataatc attcgccaat tgaatttgtt
     1321 acaggccgag tgaagccggt tgcgagcata ttagataagg ccaatcaaaa gcatattgca
     1381 ctagatcact tagtagaaga aatgcaggat attgcgggac tccgtatgat gtgccaattt
     1441 gtagatgata ttgaagtagt agtgcgcctt ttaagacagc ggaatgattt tcgaattgta
     1501 gaagaacgcg attatattac aaacaagaaa cccagtggtt accgctccta tcacgttgtt
     1561 attgagtacc cagtggaaac aattcaagga gaaaagaaaa tcttagctga aatccaaatt
     1621 aggacacttg caatgaattt ttgggcaacg attgagcatt cggtaaacta caagtatcaa
     1681 ggcgaatttc cagaagcaat caataaacgt ttaaagcgcg ctgctgaggc tgcttttcaa
     1741 ctagatgagg aaatgtcgca aattcgcgaa gaaatacaag aagcgcaagt ttatttttct
     1801 caaaataaag acgtatcaaa ggataaaaaa gcagtgcatc aagtaatgcc aaagaaaaat
     1861 aagtaattag ttgtaggaat aggggcgaat agaaataatg aaatatatga ttacttccaa
     1921 aggggacgaa aaatccgatt tgctgcgact aaatatgatc gcaggttttg gggaatatga
     1981 catggaatat gatgacgtag agcctgaaat tgttatttct attggtggag atggaacgtt
     2041 tctgtctgct tttcatcaat acgaggaacg cttggatgaa attgccttta tagggattca
     2101 tactggtcat ctaggctttt atgcggattg gagaccagct gaggcaaata aattagttaa
     2161 gcttgtagca aaaggagaat atcagaaagt ttcctatcct cttctcaaaa caaccgtgaa
     2221 atatgggatt ggcaaaaaag aagcaacata tttagcgctt aatgaatcaa ctgtaaaaag
     2281 ttcaggaggc ccttttgtag tagatgttgt gattaacgat attcattttg aacgatttcg
     2341 tggagatggc ctttgtatgt caacacctag tggaacaacg gcttacaata aatcgctagg
     2401 tggggcactt atgcatcctt ctattgaagc aatgcagtta acagagatgg catcgattaa
     2461 taatcgagtg taccggacaa tcggtagccc actagttttt ccgaaacatc atgttgttag
     2521 tttacaaccg gttaatgaca aggactttca aatttctgta gatcatttga gcattttgca
     2581 ccgggatgta caagaaattc ggtatgaagt atctgcaaaa aaaattcact ttgccagatt
     2641 taaatcattt ccattttggc gtcgtgtaca cgattcgttt attgaagatt aagctagcag
     2701 gagggagcat gtgtttttag aatggaaagt cgaaacggaa gaagatggac tcttacttcg
     2761 cacgtttttg aagagtaaac atatttcgaa acaattatta actgccgtga aatttggggc
     2821 agaggggaaa attgaagtaa ataacaaaga acaaaatgtt ttgtatcacg taaaagtagg
     2881 cgataaagtg aggcttactt ttccaacaga gcaacaaaat gaacgattgc ttgcggaata
     2941 taccgattta gatattattt ttgaagatga ttttttatta attatcaata aaccagctgg
     3001 tatggcttct attccatcac aatatcatcc aaatggatcc gttgcaaatt ttgtcaaagg
     3061 gcattatgaa acgcaaggac tgacgaatgc tattcatatt gtaacaagac tcgatcgtga
     3121 gacgtctggg ttaatgttaa tcgccaaaaa tagatttgct catgctagat taagtacgtt
     3181 tttgcaaaaa ggattactaa aacggcgcta tcaagcattt acatcaggag ttttagtaga
     3241 acaaaagggt tcgattgaag cgccaatagg acgcaaagaa gtgagtataa tggaacgttt
     3301 tgttactcct gaaggtaaat atgccaaaac aaattatgag gttctcgcgc gctatagagc
     3361 atttgaccat gtggctattc aacttgagac aggaagaaca caccagattc gtgtgcattt
     3421 ctcttatatt ggacatccgc ttattggcga tgatatgtac ggaggagata cgaatttgtt
     3481 gaaaagacaa gcgctgcact catgtcatct gcatttagtc caccctttga cagaaaaata
     3541 tatggcgttt gatctacctt taccagcaga tatggaagag ataattcaaa aatcgaagta
     3601 ataagagttt taaaaagtta tttggtcatg taaaatggaa gaagcgaaca aatcgcatca
     3661 attttaggag gaaagaacat gaatttatca ttagagggaa aaacatatgt tgtaatggga
     3721 gtagctaata agcgtagtat tgcttgggca attgcgcgtt cactaaatga agctggagcg
     3781 aaacttgtat ttacatatgc ggacgatcgt gcgaaaaaaa gcattacaga actagtacct
     3841 tcattaagcg aagtaaatca aaatccactt atcttagctt gtgatgtaac aagtgaagaa
     3901 gctattacag aaacatttga aacaattaaa gataaaactg gcaaacttag tggcttagca
     3961 cattgtattg ctttcgctaa caaagacttt ttaactggag attatttaga agtagatcgt
     4021 aaaagcttct tacaggcaca tgaaattagt gcttactcat tcacagctgt tgctcgtgca
     4081 ctaaaacact tagaaatgtt gacagaagat gcaagtttac taacattaac ttaccttggt
     4141 ggggaacgtg tagtagaaaa ctataatatt atgggtgtag caaaagcttc tctggatgca
     4201 agtgttcgat accttgctat ggacttaggg gcaattggtg ttcgtgtaaa tgctatttct
     4261 gcaggaccaa tcagaacggt atctgctcgt ggcgttagcg gtttctctga ttctatttca
     4321 ctagtggaag aaagagcccc actaaaacgt gcgacacaag cggaagaagt tggcgataca
     4381 gcatattact tattcagtaa tttatctcga ggcgttactg gcgaagtaat tcatgtagat
     4441 agcggttatc atattattgg attttaaaga aaaaagaccg taagtagtta aaaactactt
     4501 acggtctttt tttggtccat tttctggatg ttctttaaag taatattctt ttggtgttgg
     4561 tttatagttt gtttgcattg gttctttaac gaagtctgct aatacttggt cgatttttac
     4621 ccaaccgcgc cagcttaaat gaatcggatc ttctaagaaa aaagcatcat tttgatattc
     4681 ttctagagag tagtaacgga aaccttgact ctcaatttgt tcttttgttt tagcataata
     4741 gtcatctaaa ccttgtttgt ccataccaat gtaatcaatc cattttccat tgataggcgg
     4801 gttaatgaaa atgacatctg caccagcctt tttgaaagca tccattagta gctgtaaatc
     4861 agcaaactca ggagattggt cataacgtaa atctttgcgg ctatttttta atttaccttc
     4921 aattggtttg attttctttt ggtaataatg ttctttgact tgaaaagggt tattaccagt
     4981 acttctctcc ccagtttctt tagccaattc atctagtttt tggtaatcta aagtttctgg
     5041 aagttctttt aggcctttgt ttacgcgatc ttgtttggaa ccaatgatgt attttgattc
     5101 taaatcatct ttacgttcca aaatcttcag ttcgatatta ccagtaatgt ttagaagttt
     5161 tggatcatga ggttttttag gcccttttgc gacaatgttt tcgagtaatt tttttaatgt
     5221 agagtcactt tgaactactt ggaaagataa taaacgttta gctgcatagc gacgttcagg
     5281 cgtatttttc gtatcttcta atgcgaattt atatgcatga agaggggaaa aattggcacc
     5341 aaatgatggg tcagaaacgc ctttaggttg gaaccattgt ggagataaaa ctaccgctac
     5401 tttttttcct tttaaatcat caccaagtgc atttacgtct aagaaatgac ttaatgattg
     5461 tgtacctggg cgaccaagta aaaatggtgt atagccctga ttgtattttt ttgagactac
     5521 gctaggatga aatgggtcga cgcgggaaag ctctgaagaa ccataaattg gtaaatagtt
     5581 tccttcttgt aaagcttttt tctggatgtc taagccttgg atgacggatt cgttcattga
     5641 tgtagcgctt ttctctacgg tttcagaaga aactttagag aataagctac taggtccgaa
     5701 tagaacgaaa aggaaaaccg cgaatgcgac cagtaaaggc ccaaatgtca tccacagctt
     5761 ttttttcatt attttagcgc ctcgagttgt gtaataatca tttcaggagt agcccattcg
     5821 tcgcggtcaa attcggaaac aggtacagtg atatctaatt tttcttcaat ttcaattaaa
     5881 agttgaaccg tagccataga atcaagcaag ccttcatcaa ataatttaat atttgtattt
     5941 tgtactactt catccgtttc tgtaatttcc tctaagattt ctaatacatt ttcacgaaaa
     6001 gccattataa attaccacct ttagttagtt ttaaaaatta attttatcta aaatacctga
     6061 gaatatcagg aatccgaaac aaacaaattg gaatgtaatg aaaacgccga ttacataagt
     6121 aattttgttt tttggataga atttgtgctt cttgttaaag cgttcgaata ggtcaaatcc
     6181 aacaattagt gttgcttgat aaaggccata aacgatgtaa taccaatgaa gtccatgcca
     6241 tacacccatg atgaaaaagt taacgaaata tgctaggtag gcaatagtga acttactttt
     6301 aaaccatttc ttttttgtaa cccaaaatac gaaacgcatg aatacataat cgcggaacca
     6361 gaaagaaagc gtcatatgcc aacgattcca gaactcttta atattgcgag ctgcgaaagg
     6421 tttgttaaag ttcataggtg tttgaacgcc gagtaagtaa ctaaccccaa ctgcaaaggc
     6481 actgtaacct gcaaagtcaa agaataaata catactatag gcatacatat aaccaattaa
     6541 actctttgtt gtgtctacat ggtgtgtaat cgcgatgtct agtggaacaa caaaatgttt
     6601 gtttactaag taagcgataa tgaatttgta gagaaaacca aggaagataa ggaatattcc
     6661 tcgatttaat aaagctagat aagcttcttt actaggcgga ttatccacgt cttttttaaa
     6721 gcgacggaat cggtcaatcg gtccggatga tatagtcggg aagaatagta agaaattaac
     6781 aaaatcccac gcgttatact gtttaattaa gttatcgcgt atttcaataa tcatttgtgc
     6841 cgctttaaat gttaagtagg aaatccctag gaaaccaacc attgtaacat tgtctcctaa
     6901 aattggaaca actttagaga taataagggg gagaatagac agaatcactg ctatgacgaa
     6961 tacgccgccg tggttctgct ttttctcctg cctgtaatgg aagtaaagtc gtacaagagc
     7021 aagttgccag aagacaaaga agataaaagt agctccttgg actggacttg ctgagaacat
     7081 aaagtataaa aatacgagtg tcacaaaagc attataaatc ggtaatcttt ttcctaacaa
     7141 accagctact atgataggaa tcaaaaatag tacaagtact ccaaaataaa ggattgtgcc
     7201 gtatggtaaa ctcacttgtt aacctcgcta ttaagcgcct tgcgatcgat tttgccattc
     7261 atagttaacg ggaattccgt tttgtaaatc cattttcttg ggatcatgta tgctggcata
     7321 aattctttca gttcattttt tattgctgca cttagctggt attctttttc gaaatcatgg
     7381 ttagtaggga tgacctgtgc gaccaacata tctacctttt catctttcat tttaggaata
     7441 atagcgcagt tttgaatgta acttactttt tttaggttgt tttcgatatc ttctaattcg
     7501 atgcgataac catgcagttt aatttggaag tcaagacgtc cttggaagaa cagataaccg
     7561 tctttgataa tgccagagtc tcctgtgcga taagcttgat aacctttata gtcgaagaat
     7621 acttggtctg ttttttcagg ttcatttaag taacctttag aaacgctagc accaatcagg
     7681 acaatttctc ctttttcgcc ttctggaaga acctcaccag tttcttggtc aacgatgtgt
     7741 aaacgcatat ctggtttaat aacgccaagt ggtaagcttg gataagcatc gataacctct
     7801 cgagttactt ttacttgagt gacagccacg gttgcttctg taggtccgta tgtgttgtaa
     7861 ataactgcat ctgggaaacg attcagcaat tcgcttgctg ttttcttggc aagtacttca
     7921 ccacagaata agaaacgaat taagccaggg ttattttctt ggttaaagtt atcgtctagt
     7981 aagcacaaat cagcaaaaga aggagtagaa acccatacat ccaagttttg agcaggtatt
     8041 tcacgatata aatctttcat attcgcagta attgttttat caagaggtac aagcgttcca
     8101 cccgatagta aacttggata taaatccata acggatagat cgaaggaaaa gggtgcttgg
     8161 tttaagaaac gcaatccttg gcttaaagaa aagtcttgta atatccagtt actaaaactt
     8221 actagattgt tttgactgat ttgaacccct ttaggatttc ctgtacttcc ggatgtgtaa
     8281 ataatatagt agttatcatc attttttaca catgcttctt tatctggaac ttctccgaaa
     8341 tgtttctcta aggcgtccat tagctgatct tgtgttagta ccggacaacc agtaatagta
     8401 aggttactag gtagctcttc tgtacaaata aacaaagaag gatcagctgc ttttttaatt
     8461 tgttctatac gttcaactgg catagaaaca tctactggta cataagctcg acctgatttg
     8521 atagagccta aaaatgcaac tagcattagg ggagacatat gtccgtaaac gataataggt
     8581 ttttctttgt cagtatttag gttttttagt agaaaagagc cgaatgcatc agattgtcgt
     8641 tttagttctt tataggaaag acgtgttcca gcatattcat agcaagggaa atccggtgtc
     8701 ttctctgccc atgcatcaat tctttctatg atactcgttg tcattattga tattcccatt
     8761 tttaacagtc ctttcttctt ttagaattca ttgtaaatga atttcgcacc ttcagggttt
     8821 ttgaaaccat aaaaccaaag caatcctagc aaaacaacaa ggtagaaaaa agttttcatt
     8881 gtaaaaatag ttgctggatg ttgcaaaatg agttttattt tattcataaa tccacctctt
     8941 tattatttca tttgtgttac aaatattaaa aataaacgtt taatacttac ttactgtaat
     9001 acatttgtct ttaaatgtct aattacattt ttgtaaggtt aggaaaatat gcatattttg
     9061 aacttgaaag taggtacgag tataatgaaa caatagatat agtaatgttt taatgctaga
     9121 aaagaggttg gaatatgatt aatcaaaaga agatagcagg agaaaaggct tgtgagtgga
     9181 ttaaagatgg aatggttgtg ggccttggaa cgggcagtac agtctattac acgattgaaa
     9241 agcttggaga aatggtaaat aatggtttgc atattacagg ggtggcaact tctgaagaaa
     9301 caagcaaaca agcacaaaat ttaggaatac ctttgaaatc gctaaatgac gtagcggaaa
     9361 tagatattac tattgatggt gctgatgaaa ttgatacgga ttttcaagga ataaaaggtg
     9421 gaggaggagc actattacgt gaaaaaatgg tagcaagtgc gagtttgaaa aacatttggg
     9481 ttgtcagtga ggagaagctt gtaagaaact tagggaagtt tcctttgcct atagaagtaa
     9541 taccttttgg ttggaagcaa attgagagaa cacttgaaaa agagcatgtt caaacaattt
     9601 tacggagaca atcttcagga gaaatctatg tgacaaataa cgggaactat attttggata
     9661 tagtaaatca aacttttagg gatgcagaaa tgtggcaaga aaaattagcg caaattccag
     9721 ggattgtgga gcat
//
LOCUS       DASEAA010000101         9689 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.101, whole genome shotgun sequence.
ACCESSION   DASEAA010000101 DASEAA010000000
VERSION     DASEAA010000101.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9689)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9689)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9689
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.101"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            15..599
                     /locus_tag="U0342_001957"
     CDS             15..599
                     /locus_tag="U0342_001957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihA family ribosome biogenesis GTP-binding
                     protein"
                     /protein_id="HEM2423300.1"
                     /translation="MDVNNVELIISAVRPEQYPETDLPEYALAGRSNVGKSSFINTMI
                     RRKSMARISQKPGKTQTLNFYKIEEALFFVDVPGYGFAKVSKTEREKWGVMIETYITS
                     REQLRGVIQIVDLRHKPTEDDRMMYEFLKYYDIPVIVVATKADKIPRSKWQKNAKIVR
                     ETLDFDPDDKFVLFSSETKMGKDEAWQFIKEGME"
     gene            727..2034
                     /locus_tag="U0342_001958"
     CDS             727..2034
                     /locus_tag="U0342_001958"
                     /EC_number="1.2.1.70"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamyl-tRNA reductase"
                     /protein_id="HEM2423301.1"
                     /translation="MFILTMGLNHHTAPIDIREKLVFKESEEEMALVTLQQEKSILEN
                     VIISTCNRTEIVAVVDQIHTGRYYLKRFMANWFQMDMEKIEPYLFFHEESDAVNHLYK
                     VTAGLDSLVLGETQILGQVKHAFEIAKQTATTGTLLNKLFREVVTFAKKVHHHTKINE
                     NAVSVSYAAVEVAKKLYGSLDNKKIVLVGAGEMSELALQNLAGSGIADITIINRTKSN
                     AELLANQFQAKVGAYENMNEHLMLADIVLVSTSAAEPIIKQAAMQDLMEQKASSMLVI
                     DIGLPRNVEHDCSYIPNFHLYDIDDLAGVVSANSLERQRIVLELEKTIEAEVRNFFEW
                     EKQLGVVPVIRALREKALDMQEVTMTSLENKLPGLTEREYIQIGKHMKSIINQMLKQP
                     ISELKEMSVEEDATTSIEHFKRIFGLSETDVTVIEKEQAETRS"
     gene            2038..2967
                     /gene="hemC"
                     /locus_tag="U0342_001959"
     CDS             2038..2967
                     /gene="hemC"
                     /locus_tag="U0342_001959"
                     /EC_number="2.5.1.61"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxymethylbilane synthase"
                     /protein_id="HEM2423302.1"
                     /translation="MKRKIIVGSRRSKLALTQSNWVINKLKENYPEFDFEIKEIVTKG
                     DRILDVTLSKVGGKGLFVSEVEQALSDEVIDFAVHSMKDVPSSLKEGLIIGAIPKRES
                     PLDCFVFNRVNSLDELPQGSVIGTSSLRRAAQLLKHRPDFVIKPIRGNIDTRLQKLHA
                     ENFDAIILAKAGLARMGWLENTTLKLEDIPPELCLPAVGQGALAIECRESDQQIRDML
                     TSIHHEETGICVEAERVFLKKLNGGCEIPIAGFATRANEVVHFKGLVGNADGSIILAS
                     EQAGANPSEIGNKVAEDLLSEGADTIIKELRNI"
     gene            2964..3686
                     /locus_tag="U0342_001960"
     CDS             2964..3686
                     /locus_tag="U0342_001960"
                     /EC_number="4.2.1.75"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen-III synthase"
                     /protein_id="HEM2423303.1"
                     /translation="MSKKVVLTREANKNKPWQTYFSQNGFEVTSIPLIKTRPIKMDLS
                     REQQQTDWLFLTSANAVEYFFTNQHERFNYKIAVIGEKTKEKLAEFGHEPNFVPSIYQ
                     SEVFLEEWLNENPEKTSILIPQSNLSRTIIKDRLIEKGYIVVSFELYETIFPENSKIR
                     LIEQLKLNETQIIVFASPSAWKNFYSTAKSFPAQKEKWHIASIGSITTEAIIADGWEV
                     KYQPKTFTMKHLADLIIQEELK"
     gene            3683..4657
                     /gene="hemB"
                     /locus_tag="U0342_001961"
     CDS             3683..4657
                     /gene="hemB"
                     /locus_tag="U0342_001961"
                     /EC_number="4.2.1.24"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="porphobilinogen synthase"
                     /protein_id="HEM2423304.1"
                     /translation="MKNQFDRHRRLRKTKTMRDLVRETVLHTDDLIYPIFVKDGKEPK
                     TEVASMPGVFQYPLHELEEEMRVVESLGIKAVILFGIPAEKDAVGTQAYHDHGIIQEA
                     TRLIKKSFPEILVVADTCLCEFTDHGHCGVIENGEILNDESLELLKQTAVSQAAAGAD
                     IIAPSNMMDGFVQVIREGLDEAGFYDIPIMSYAVKYASAFYGPFRDAAGSAPQFGDRK
                     SYQMDPANREEALREAMSDEQEGADFLIVKPSLSYLDIMRDVKNNTNLPVVAYNVSGE
                     YAMVKAAAQNGWIDEEKIVLEMLTSMKRAGATLIITYFAKDASKYLNK"
     gene            4670..5959
                     /gene="hemL"
                     /locus_tag="U0342_001962"
     CDS             4670..5959
                     /gene="hemL"
                     /locus_tag="U0342_001962"
                     /EC_number="5.4.3.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-1-semialdehyde 2,1-aminomutase"
                     /protein_id="HEM2423305.1"
                     /translation="MQNYSKSEKAFKEAKKVLPGGVNSPVRAFNSVDASPVFMDHGKG
                     AYITDVDGNEYIDYVLSWGPLILGHADPAVVNAITKAALKGTSFGTPTEIETELAKLV
                     IERVPSIEIVRMVSSGTEATMSAIRLARGYTKREKILKFEGSYHGHGDSLLIKAGSGV
                     ATLGLPDSPGVTKGLAADTITVPYNDIEGAELAFQKYGEEIAAVIVEPVAGNMGVVPP
                     IDGFLEGLRELTTKFGSLLIFDEVMTGFRVDYYSAQGYYVVTPDLTCLGKVIGGGLPV
                     GAYGGKKEIMEQIAPAGSIYQAGTLSGNPLAMNAGFETVRQLTPQHYDVFRTLIKRME
                     EGLTEISARRQVPLSINKAGSMFGFFFTDQKVINFDTAKTSNLEFFRNYYREMLGQGI
                     FLPPSQFEGVFISTMHTEKEIDKTLEAFDTTCKILRG"
     misc_binding    6007..6234
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            6283..8934
                     /locus_tag="U0342_001963"
     CDS             6283..8934
                     /locus_tag="U0342_001963"
                     /EC_number="6.1.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="valine--tRNA ligase"
                     /protein_id="HEM2423306.1"
                     /translation="MTIEHNEINMPTKYEPSNVEAGKYKWWLEKEFFKAEGNTDKKPY
                     SIVIPPPNVTGKLHLGHAWDTTLQDIITRMKRMQGFDTLYLPGMDHAGIATQAKVEAK
                     LKESNVSRYDLGRENFVDKTWEWKEEYAEFIREQWEKLGLGLDYSRERFTLDDGLSDA
                     VKKVFVTLYNKGLIYRGQYIINWDPEAKTALSDIEVIHKDIEGSFYHLKYPLTDGSGY
                     LEVATTRPETIPGDTAVAVHPKDERYQHLIGKTIMLPILNREIPIVADEYVEREFGSG
                     AVKITPAHDPNDFEVGNRHELPRIIVMHEDGTMNKNAGKYDGLDRFVARKEIIQDFKD
                     LGLFIKQEPHLHSVGHSERTGAVVEPYLSLQWFVKMEPLAAEALELQKTENKVNFVPA
                     RFEKTYETWMDNIHDWCISRQLWWGHRIPAWYHKETGEIYVGESEPENLSEWEQDEDV
                     LDTWFSSALWPFSTMGWPDTENPDFQHFFPTNTLVTGYDIIFFWVSRMIFQSVEFTGE
                     RPFKDTLIHGLVRDSEGRKMSKSLGNGVDPIEVIDKYGADSLRYTLATGSSPGQDLKF
                     SYEKVESTWNFINKIWNASRFVLMNLDGMKYNEIDLSNVTEVSDKWILTRLNETIQAV
                     TSLGEKYEFGEVGRTLYNFIWDDFCDWYIEIAKIPLYGEDEVAKQTTRSVLAYTLNAT
                     MRLLHPFMPFVTEEIWQNLPHEGESITIAEWPKVNEQQIDTKSSTAMATLVEVIRAVR
                     NIRSEVNTPLSKPIVLEIKPKDTTYKEILEQNISYIERFCNPEQVTISFDVEASKTAM
                     TAVVSGAEIFIPLEALIDLNVEIARLEKELEKWNKEVARVQGKLNNERFISKAPESVV
                     AEERLKEKDYLDKKASVLERIETLKEV"
     gene            8996..>9689
                     /locus_tag="U0342_001964"
     CDS             8996..>9689
                     /locus_tag="U0342_001964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM2423307.1"
                     /translation="MTLNSYEEALDWIHGTLRLGIKPGLARMEYMMEKLNHPEKANKW
                     VHIAGTNGKGSTLTFVRNALEEAGYRTGTFTSPYIEVFNERISINGEPISDEMIVSLA
                     NRIKPIAEELEKTIYGPPSEFEIITAMMFLCFAEYVSIDIGIIEVGLGGRLDSTNILV
                     PLISVITTIGMDHMEFLGDTIEQIASEKAGIIKPGIPVVSGAIQKEAQEVIAKIAKKN
                     KSNVAQLNETFFM"
BASE COUNT         3341 a         1549 c         2025 g         2774 t
ORIGIN      
        1 caggatggaa aattatggat gtaaataatg tagaactaat aataagcgct gttcgaccag
       61 agcaatatcc cgagacagac cttccagaat atgcacttgc aggtcgatca aacgttggaa
      121 aatcatcttt tatcaatacg atgattcgcc gcaaaagtat ggcaagaatt tcacaaaaac
      181 caggaaaaac acaaacacta aatttttata aaattgaaga agcacttttc tttgtcgatg
      241 tacccggtta tggtttcgct aaagtttcga aaacagaacg agaaaaatgg ggcgtcatga
      301 ttgaaaccta tattacttct cgcgagcaac ttcgtggtgt tatccaaatt gttgatttac
      361 gacataagcc aactgaagat gaccgaatga tgtatgaatt tctgaagtat tacgacatcc
      421 ctgtcatcgt cgtagcaacg aaagcagaca aaatcccacg cagtaaatgg caaaaaaatg
      481 ctaaaattgt ccgagaaaca cttgattttg atcctgatga caaatttgtc ttattttcct
      541 ctgaaacaaa aatgggaaaa gacgaagcat ggcagtttat caaagaagga atggaataat
      601 agaaggagtt ggaatgaaaa atccagctct tttttccgtc taaatacata aacggactat
      661 ttggtgaaca catcgaaaag tggtagaatg tattagagtt caatttaatt ttaggaggat
      721 tatcgaatgt ttattctcac catggggctg aatcatcaca cagcaccaat cgacatccgc
      781 gaaaaattag tttttaaaga aagcgaagaa gaaatggcct tagtaacatt acagcaggaa
      841 aaaagtatcc tcgaaaatgt tattatttca acgtgcaatc gaacagaaat tgttgcggtt
      901 gttgatcaaa tacatacagg tagatattac ttaaaacgct ttatggctaa ctggtttcaa
      961 atggatatgg aaaaaatcga accttatttg tttttccatg aagaatcaga tgctgtcaat
     1021 catttatata aagtaaccgc gggacttgat tcgttagtac tgggagaaac gcaaatcctc
     1081 ggacaagtaa aacatgcatt cgaaatcgcc aaacaaacgg ctacaacagg tacactttta
     1141 aataaacttt ttcgggaagt agttactttc gcaaaaaaag tacaccacca tacaaaaatt
     1201 aatgaaaatg ctgtgtctgt cagttatgcc gctgtagagg ttgcaaaaaa attatatggt
     1261 tcattagaca ataagaaaat tgtgctagtt ggtgcagggg aaatgagtga actcgctttg
     1321 caaaatctcg ctgggagcgg cattgcagat ataaccatca tcaaccgtac taaatctaat
     1381 gcagaattat tagcaaatca atttcaagca aaagtgggcg catatgaaaa tatgaatgaa
     1441 catttgatgc tagcagacat cgttctcgtt tcgacaagtg cggcagaacc tattattaaa
     1501 caagctgcta tgcaagattt gatggaacaa aaagcgagtt cgatgcttgt aattgatatc
     1561 ggtttacctc gaaatgttga acatgattgt tcatacattc ccaatttcca tttatatgac
     1621 attgacgatt tggcaggggt cgttagcgcg aactcattag agcggcagcg aatcgttctg
     1681 gaacttgaaa aaactattga ggcagaagtt cgtaactttt tcgagtggga aaagcaacta
     1741 ggcgtcgtcc ctgttattcg tgctttgcgt gaaaaagcgt tagatatgca agaagttact
     1801 atgactagtt tagaaaataa acttcctgga ctaacagaac gcgaatacat tcaaattgga
     1861 aaacatatga aaagcattat aaaccaaatg ctgaaacaac ctatctcaga attaaaagaa
     1921 atgtctgtag aagaagatgc aactacaagt attgaacatt ttaaacgtat ttttgggttg
     1981 agtgaaacag atgttactgt aatagaaaaa gaacaagccg aaacgaggag ttaacggatg
     2041 aaacggaaaa taattgttgg ttctagacga agcaagttag ctttaactca gtctaattgg
     2101 gtgattaaca agctcaaaga aaattatcct gagttcgatt ttgagataaa agaaattgtt
     2161 acaaaagggg accgtatttt agatgtaaca cttagcaaag taggcggaaa aggtctattt
     2221 gtatccgaag tggagcaggc tttaagtgat gaagtgattg attttgcggt acatagcatg
     2281 aaagatgttc catcaagttt gaaagaaggg ttaattattg gcgcgattcc aaaacgtgaa
     2341 tcgccattag attgcttcgt tttcaatcga gtgaattctc tagatgagtt accacaaggc
     2401 tcggtcattg gtacaagtag cctccgtaga gcggcacaac ttctaaaaca tcgacctgat
     2461 tttgtgatta aaccgattcg aggcaatatc gatacacgtc ttcaaaaatt acatgcagaa
     2521 aattttgatg caattatctt agcaaaagct gggttagctc gtatgggttg gttagaaaat
     2581 actacgttaa aactagaaga catcccacca gaattatgtt tgccagctgt tggacaaggt
     2641 gcacttgcta tcgagtgtcg cgaaagtgat caacaaatcc gcgatatgtt aacttctatt
     2701 catcacgaag aaactggaat ttgtgtagaa gcagaacgtg ttttcttgaa aaaattaaat
     2761 ggtggctgtg aaattccgat tgccggcttt gctacaagag ctaatgaagt cgttcatttt
     2821 aaaggtttag ttggtaatgc ggatggttcc atcattcttg catccgaaca agctggtgca
     2881 aatccaagtg aaattggaaa taaagtagca gaagatttgc taagtgaagg tgcagatact
     2941 attatcaaag aactgagaaa tatatgagta aaaaagttgt tttaacaaga gaagcgaata
     3001 aaaacaaacc atggcaaacc tatttttcgc aaaatggttt tgaagtgacg tcaatcccgc
     3061 tgattaaaac acgacctata aaaatggatt tgagtcgaga acaacaacaa acagactggc
     3121 tttttttaac aagtgcaaat gctgtagaat atttctttac gaaccaacat gaaagattca
     3181 attataaaat agctgtcatc ggtgaaaaaa caaaagaaaa actggcagaa tttggtcacg
     3241 aaccaaattt tgtcccatct atctatcagt cagaagtatt tttagaagaa tggctaaacg
     3301 aaaacccaga gaaaacaagt atcttaatac cacaaagtaa tttaagcaga acaataataa
     3361 aagatagatt gattgaaaaa ggttacatcg ttgtttcgtt tgagctctat gaaacaatct
     3421 ttccagaaaa ttctaaaata cggttaatcg aacaactgaa actaaatgaa acacaaataa
     3481 ttgtttttgc cagcccatct gcatggaaaa acttctattc cactgcgaag tcattccctg
     3541 ctcaaaaaga gaagtggcat attgcatcca ttggtagtat tacaacagaa gccattatag
     3601 cagatggatg ggaagtaaaa tatcaaccaa aaaccttcac catgaagcac ctagctgatt
     3661 tgataataca ggaggaatta aaatgaaaaa tcaatttgat agacatcgtc gtctaagaaa
     3721 aaccaaaaca atgcgtgatt tagtaagaga aacagtttta catacagatg atttaatcta
     3781 tccgattttt gttaaagatg gcaaagaacc aaaaacagaa gtagcttcta tgcctggggt
     3841 ttttcaatat cctttacatg aactagaaga agaaatgcgc gtagttgaga gccttggtat
     3901 taaagcggtt attttatttg gtattcctgc cgagaaagac gcagttggca cgcaagctta
     3961 tcacgaccac ggaattattc aagaagctac aaggcttata aaaaaaagtt ttcctgaaat
     4021 tcttgtggtg gctgacacat gtttatgtga atttactgat catggacatt gtggtgttat
     4081 tgaaaacggg gaaattctca atgacgaatc gcttgaatta ttgaaacaaa cagctgtcag
     4141 tcaagccgct gcaggagcgg atatcattgc tccatctaat atgatggatg gttttgttca
     4201 agtcattcgc gaagggttag atgaagcggg attttatgat atcccaatta tgtcatatgc
     4261 agttaaatat gcgtctgctt tttatggacc gttccgtgat gctgctggta gtgcccctca
     4321 atttggtgat agaaaatctt atcaaatgga tcctgccaat cgtgaagaag ctcttcgcga
     4381 agcaatgtcg gatgaacaag aaggtgcaga tttccttatt gttaaaccat cattatcata
     4441 cttagatatc atgcgcgatg ttaagaacaa taccaattta ccagtagttg cctacaatgt
     4501 tagtggtgaa tatgcaatgg taaaagcagc tgcgcaaaat ggttggatag atgaagaaaa
     4561 aattgtttta gaaatgctaa caagtatgaa acgagcgggt gcaacactta tcattactta
     4621 ttttgcaaaa gatgcatcca aatatttaaa taaataggag gtaagaaatt tgcaaaacta
     4681 ttcgaaatcc gaaaaggcct ttaaagaagc caaaaaagtc ttacctggtg gtgtaaatag
     4741 ccctgttcga gcattcaact ctgtagatgc ctcgccagtt tttatggacc acggaaaagg
     4801 cgcttatatt acagatgttg atggtaacga atatattgat tatgtgttat cttggggccc
     4861 tctaatttta gggcacgctg atccagctgt tgttaatgct attacaaaag cagctctgaa
     4921 aggtaccagc tttgggacgc ctactgagat tgaaactgaa ttagcaaaat tagtaattga
     4981 acgtgtgcca tctattgaaa ttgttcgtat ggtttcatca ggaacggaag caacgatgag
     5041 tgctattcgt ttggctcgcg gttatacaaa aagagaaaaa atcttgaaat ttgaaggaag
     5101 ttatcacgga catggagatt ctttattaat taaagctggt tcaggggtag caacactcgg
     5161 attaccggat tctccaggag ttactaaagg tcttgcggca gatacaataa cagtcccata
     5221 caatgatatt gaaggagccg aactggcctt ccaaaaatat ggagaagaaa tagcagcagt
     5281 catagttgaa ccagtcgcgg gcaatatggg tgttgttcct ccaattgatg gatttttaga
     5341 aggacttcga gagcttacta caaaatttgg ctccttgctc atttttgatg aagttatgac
     5401 cggatttaga gtagattact attctgctca aggctattat gtggtaacgc ccgatcttac
     5461 ttgtttagga aaagtgattg gtggtggttt accagttggt gcttatggtg gaaagaaaga
     5521 aattatggaa cagattgctc ctgctggttc tatttatcaa gcgggaactt tatccggaaa
     5581 tccattagca atgaatgctg gctttgaaac agttcgccaa ctaacgccgc aacactatga
     5641 tgttttccgc accctaatta agcgaatgga agaaggactt acagagatat ctgctagaag
     5701 acaagtcccg ctctcgatta ataaggctgg ttcgatgttc ggctttttct tcactgatca
     5761 aaaagtgatt aattttgata cagcaaaaac aagtaatcta gaatttttcc gaaattatta
     5821 ccgtgaaatg ttaggtcaag gcattttctt accaccgtct cagtttgagg gtgtcttcat
     5881 ttctacgatg cacaccgaga aagaaattga taagaccttg gaagcatttg atacgacatg
     5941 caaaatactt cgcggctaat tgacgaatct tgaaactttt gttaaaatta tttctagtat
     6001 atagaatcaa atgcaatgaa gaggaagagt aggacattta tttttttaaa gagagaaagc
     6061 ggttggtgca agctttcaaa aatgatgtct gaaggtagcc ttggagcagt attcctgaat
     6121 ttatagtaag gaataaccgg tagatttctc tatcgttaac acaatgaagt gcctgcaatt
     6181 tttttctgtg ggtaaaaagg tggtaccgcg aataatactc ttttcgtcct tttatgagga
     6241 tgagaagagt tttttatttt gcctaaaaaa ggaggaatca ttatgacaat cgaacacaat
     6301 gaaataaata tgcctacaaa atatgagccg agtaacgtag aagcaggtaa atataaatgg
     6361 tggctagaaa aagaattctt taaagcagaa ggaaatacgg ataaaaaacc ttacagtatt
     6421 gttattccac caccaaacgt aacaggtaaa ctacatttag gccatgcgtg ggatacaact
     6481 ttacaagata ttattactcg aatgaaaaga atgcaagggt ttgacacttt atatttacca
     6541 ggaatggatc atgctggtat tgcaacgcaa gctaaagtag aagcgaaatt aaaagaatct
     6601 aatgtttctc gttatgactt aggacgagaa aactttgtgg ataagacttg ggaatggaaa
     6661 gaagaatacg ctgagtttat tcgtgaacaa tgggagaagt taggccttgg tttagactac
     6721 tcaagagaac gatttacact agatgatggt ttatcggatg ccgtaaaaaa agtattcgta
     6781 acattatata ataaaggtct tatttatcgc ggccaatata taataaactg ggacccagaa
     6841 gcgaaaacgg ctttatctga tattgaagta attcataaag atattgaagg cagtttctat
     6901 catttgaaat atccattaac tgatggctct ggttacctag aagtagctac aacacgtcct
     6961 gaaacaatac cgggtgatac agctgttgcg gttcacccaa aagatgaaag atatcaacac
     7021 ttaattggta aaaccatcat gctaccgatt ttgaatagag aaattcctat tgttgctgat
     7081 gaatatgtgg aaagagagtt tggctctggt gcagttaaaa ttacgcctgc acatgatccg
     7141 aatgattttg aagtagggaa tcgtcatgag ttgccaagaa ttattgtcat gcatgaagat
     7201 gggacaatga ataaaaatgc tggtaaatat gatggtttgg accgttttgt agctagaaaa
     7261 gaaattattc aagatttcaa agacttaggt ttatttatca aacaagaacc tcacttgcat
     7321 tcagtggggc attcagagcg aactggagcg gtagtagaac cctatctttc actacaatgg
     7381 tttgtgaaaa tggaacctct tgctgcagaa gcactggaac ttcaaaaaac ggaaaacaaa
     7441 gtgaattttg taccagctag atttgaaaaa acatatgaaa cttggatgga taacattcac
     7501 gattggtgta tttcgcgtca attatggtgg ggtcacagaa tcccggcttg gtatcataaa
     7561 gaaacaggtg aaatttatgt tggtgaaagc gaacctgaaa acctttctga atgggaacaa
     7621 gatgaagatg tactagatac ttggtttagt tcggctttat ggccattttc aacaatgggc
     7681 tggccagata ctgagaatcc agatttccaa catttcttcc caactaatac tttagtaact
     7741 ggatatgata ttattttctt ttgggtatct agaatgattt tccaatctgt tgaatttact
     7801 ggtgagagac cttttaaaga tacattgatt catggtttag tgcgtgactc tgaaggacgt
     7861 aaaatgtcta agtcgcttgg taatggtgtg gacccaattg aagttattga caaatatgga
     7921 gcagattctc ttcgttatac acttgcaaca ggttcatcac caggtcaaga tttgaaattc
     7981 agctatgaaa aagtagagtc tacttggaat ttcattaata agatttggaa tgcatcccgt
     8041 tttgtgttaa tgaatttaga tgggatgaaa tataatgaaa ttgatttgtc taatgttact
     8101 gaagttagtg ataaatggat attgactaga cttaatgaaa caattcaagc ggttacctcc
     8161 ttaggtgaaa aatatgaatt tggtgaagtg ggacgaacgt tatataactt tatctgggat
     8221 gatttctgtg attggtatat agagattgcg aaaatacctc tttacggaga agatgaagta
     8281 gcaaaacaaa caactagatc tgtacttgcg tatactttga atgcgactat gcgattactt
     8341 catccattca tgccttttgt aacagaagaa atttggcaaa atttacctca cgaaggggaa
     8401 tctattacaa ttgctgaatg gccaaaagtg aatgaacaac agattgatac taaatcttct
     8461 acggccatgg ctactttagt tgaagtgatt cgtgctgtcc ggaatattcg atctgaagtg
     8521 aatacgcctc ttagtaagcc aattgttctt gaaattaaac cgaaagatac tacgtataaa
     8581 gaaattctag aacaaaatat ttcttatatt gaacgttttt gtaaccctga acaagtgaca
     8641 atttccttcg atgttgaagc atctaaaacg gcgatgactg ctgtagtatc tggagcagag
     8701 attttcattc ctttagaggc gttaattgat ttaaatgtag agattgctcg acttgaaaaa
     8761 gaactagaaa aatggaataa agaagtggca agagttcaag ggaaactaaa caatgagcga
     8821 ttcattagca aagctcctga gagtgtagtt gcagaagagc gtctaaaaga aaaagattat
     8881 ctagataaaa aagcctctgt tcttgaaaga attgaaacgt taaaagaagt ataaaaaacg
     8941 aactgacctt atcatgaaat caactggtag ggtcagtttt aaggtggttt aaataatgac
     9001 attaaattcg tatgaagaag cattagattg gattcacgga acgcttcgtc taggaataaa
     9061 gcctggacta gctcgtatgg agtatatgat ggaaaagcta aatcatccgg aaaaagcgaa
     9121 taagtgggta catattgctg gaacaaatgg aaaaggctca acacttactt ttgttagaaa
     9181 tgctctagaa gaagctggat atagaacggg aaccttcact tcaccataca ttgaagtttt
     9241 taatgaacga attagtatta atggtgaacc gattagcgat gaaatgatcg tttcattagc
     9301 taaccgaatt aaacctattg cggaagagct agaaaaaact atttatggac caccttcaga
     9361 atttgaaatt attacagcta tgatgttttt atgctttgcg gaatatgttt ccattgatat
     9421 tggtattatc gaagtaggac taggcggaag actggactct acgaatattc tagtgccact
     9481 aatttctgta attaccacga ttgggatgga tcatatggaa ttccttgggg atacaatcga
     9541 gcaaattgct agtgaaaaag ctggcataat taagccagga ataccagttg tttcaggtgc
     9601 tatacaaaaa gaagctcaag aagttatagc taagatagca aaaaagaata aatccaatgt
     9661 tgctcaatta aatgagactt ttttcatgc
//
LOCUS       DASEAA010000102         9591 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.102, whole genome shotgun sequence.
ACCESSION   DASEAA010000102 DASEAA010000000
VERSION     DASEAA010000102.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9591)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9591)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9591
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.102"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            96..1364
                     /locus_tag="U0342_001965"
     CDS             96..1364
                     /locus_tag="U0342_001965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466372.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2423308.1"
                     /translation="MAGSSTSKKGTIAVSLTNYLDSGCIVAGASGLTLWATQFGLSSF
                     AVGLLGAVSANAFGSAIGALIGGHLADKYGRKFIYTYNMLVYMLGVTIIMFAMNFPML
                     LIGFLVTGLSVGAGVPASWTYISEMADPSIRARNIGISQFAWSCGPAIIFTLGIIVSP
                     LGLLGNRLLFLSLLIVAFVAWQLQRKLEESKDWEAEQVKMKESGNRLEHPFKTAFSSM
                     VNVKSVLFLVGVYLFWNLVAGAMGFFMPFVYETVGGLSNTQANLLQAVLWILTAASTY
                     FGFAKFGDRVSHRGLFFVGALMAVASWVVLTFVGMSWVGLWTFVILWGISAGIGAQAF
                     YALWSTELFPTKYRGGVQGVMFFLVRGSTGVWSIVFPVILANLGFTVAGTIMIGLLTV
                     SLLIGVIWAPKTRGRSLDDITKERYGNTID"
     gene            1383..2834
                     /gene="rhaB"
                     /locus_tag="U0342_001966"
     CDS             1383..2834
                     /gene="rhaB"
                     /locus_tag="U0342_001966"
                     /EC_number="2.7.1.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466371.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulokinase"
                     /protein_id="HEM2423309.1"
                     /translation="MKHYVAVDIGASSGRLILGKLVNEKLQLEEIHRFKNGFTYRDGH
                     ERWEIDQLMQEIFIGLEKVKQLGISECVLGIDTWGVDYVLIGASGEKLADPISYRDKR
                     TLNAVQNLTSEYPREYIYKKTGIQFMELNTLYQLYVEERDLLERAEKILLIPDYIGYV
                     LTGVKVAETTNSSTTQMLNLREQLFDKDLLSHLNIDVEKFAPLTDAGTYLGKVKEEWL
                     EEYDIPNCDVVTVATHDTASAVVGTPAEGENWAFLSSGTWSLIGMELSAPINNEAAFK
                     ENYTNEWGAYGTYRFLKNIMGLWIVQEIARMDDYKHSFAEMAEEASNYPYFKQIINVN
                     DARFNNPENMVDEIKLYCQETGQTIPETIGELTNCVYGSLALYYALELEKMTEITGKK
                     IEKLYIVGGGSNVAMLNQLTAKLAGIEVFAGPSEATAIGNLVVQMINQGEIESMRAGR
                     KIIRNSFEIGEFSCGDVRFEEIKERFTKVLEFN"
     gene            2847..4109
                     /gene="rhaA"
                     /locus_tag="U0342_001967"
     CDS             2847..4109
                     /gene="rhaA"
                     /locus_tag="U0342_001967"
                     /EC_number="5.3.1.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466370.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose isomerase"
                     /protein_id="HEM2423310.1"
                     /translation="MGQETEISKRYQVAKERYQAIGVDTEKALKTLKDIKISMHCWQG
                     DDVKGFLNPDGELTGGIMATGNYPGAAHTPKQLRQDLEKAYSLIPGKHKLNLHAIYVD
                     TDEKVDLNEIEPKHFTPWVEWAKEQGLGLDFNPTFFSHPMFKDNYTLASPDKEVRDFW
                     IEHGKRSRKISEYFGKELGQTSINNFWVPDGIKDCPIDRYTPRKRLMEALDEVFAEKL
                     DEKYTQEAVESKLFGLGAEAYTVGSHEFYMGYGITRDKLICLDAGHFHPTEVISNKLS
                     SLALFSKGVMLHVSRPVRWDSDHVVIMDDELIEIGRELVRNDLLGITNIGLDFFDATI
                     NRIAAWVVGTRNTQKSLLKALLEPTADLKKMELENDFTSRMAITEELKDFPFGDVWNY
                     FCEINGVPVGLDWLKEVKAYEEDVLLKR"
     gene            4122..4943
                     /gene="rhaD"
                     /locus_tag="U0342_001968"
     CDS             4122..4943
                     /gene="rhaD"
                     /locus_tag="U0342_001968"
                     /EC_number="4.1.2.19"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466369.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhamnulose-1-phosphate aldolase"
                     /protein_id="HEM2423311.1"
                     /translation="MTKDIMDAVFIKEMAKTTSNLYRLGWDERNGGNITYLLDEKEVV
                     EYLDVKQIIRTIPMDFDGKKLAGKYFLVTGSGKYFKNVEEAPAVNLGVIQVSEDGKAV
                     HLLWGYTDGGLPTSELPAHFMSHIARLSVDPENRVVMHCHATHLLAMTFTHELTEREF
                     TRTLWQMCTECLVVFPEGVGIIPWLVPGTNEIGEATSEKMKENRLIVWPHHGIYGAGK
                     SMDETFGLIETAEKAAEVYTIVMSQGGIKQAITDEQLKALGERFGVEAKAGYLIN"
     gene            4956..5270
                     /gene="rhaM"
                     /locus_tag="U0342_001969"
     CDS             4956..5270
                     /gene="rhaM"
                     /locus_tag="U0342_001969"
                     /EC_number="5.1.3.32"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466368.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-rhamnose mutarotase"
                     /protein_id="HEM2423312.1"
                     /translation="MERVASIMYLYPGNQEEYKKRHDALWPEMKEALKAHGAANYSIF
                     LDEKTDTLFAYVEVEDKAIYDKIAETEICQKWWKYMAPIMKSNPNNSPVALDLKEVFY
                     LA"
     gene            complement(5311..6723)
                     /locus_tag="U0342_001970"
     CDS             complement(5311..6723)
                     /locus_tag="U0342_001970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2423313.1"
                     /translation="MEQTNKRNTLALISIMLGAFISLLDTTIVNVALPDITTALHATS
                     ETIEWVISGYALAFGLVLILAGRLGDKFGRKNIYIIGITLFLIMSVTAGFADSENSLI
                     ISRVIQGLAAGLFFPQINATIMDMYSGKSLGKIFGILGSVIGVGTAIGPLTGGLLIEL
                     FGTTNGWRAVFFVNVPFVLVTLVLAMLYLPKRTVSTKKISFDLPGVGLLTIALLLLLF
                     PLISNGANDFKPIDYLLMALSIPLFIILYKWSVYQEKKGNQPLIAPNLLKNNQFVSGM
                     LLSLVYFAAFTSIFFVLSLTWQTGFNRSAILSGLAISPFALGSVLAASNSYRLIPILG
                     RKLLMLGVALVIIGLGTVSIVFHLNDGAFSAWLLFLPLFIAGIGSGLTIAPLNSFTLS
                     TVTGVDRGGASGMFNTAQRIGSSFGIAVVGSVFFRTLGNTAATSKASAFSDSLQMSMY
                     VNIVLLVVCFLLVFRLPKNI"
     gene            6879..7421
                     /locus_tag="U0342_001971"
     CDS             6879..7421
                     /locus_tag="U0342_001971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727579.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423314.1"
                     /translation="MENRKQMIKTERLFLSEMTLADTEILFGYWSDDSVTRYMNIEPF
                     QSLQPVEEMIRMLRQLEIEGKALRCVIILQVTGEIIGTCGFNYIDHENHRAEIAYDLG
                     TRFWKRGYATEAVRALMEWGKESFELHRIEAKVDPRNSASIALLEKLGFSKEGLLRDY
                     EKIGETYQDVQLFSWIDEIQ"
     gene            7554..9548
                     /locus_tag="U0342_001972"
     CDS             7554..9548
                     /locus_tag="U0342_001972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466365.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transglutaminase family protein"
                     /protein_id="HEM2423315.1"
                     /translation="MTKEYYFIKPELSSPETKQENIDSWLKTQDKTFYDAQIAQERDY
                     CFWCNIVETAKPNSRTSYTSMAYTLNEPNMLNSAGKTSFILSEEEVLYIHTLSVVRDG
                     KVIDKLDDINVKVLDYVRDENQASFNDEKKVTVLIRDLHLNDIFIVETTIERKYEESS
                     IRNDFFRWIYSAPNSYWAYGKYRFELKNETEKKLEANFHYFRDEAGAILEKDKVMVEH
                     NESYTIEKEDYIGEDAKELEITPFVDFVTEQSYPQITKTISDIYQKFYQVNLAEFAAD
                     IVAELDELPTLDHKIKHAIDFVQKEVYYLYNETEMDGHEPQAAEVTYKTKQGDCKAKT
                     VLLKVILDYLDVNSELILVNYGSDVFLPVYTPSPFNFNHAILKITHNNQVYFIDATMS
                     SDQGFLANRQKNSFMYYLEIKSGTELQKQEPFQDEIPSVEEVVYCDVKDNAAEITFER
                     KLRGGMANGSREMFKNDSNKDIINRYNFSIYSNMTLYKKYEENEVDSHFSNTSIQIVE
                     DNKDLNELSIIYKATISDPYIVENKKRYLHFWNWNNFIDDGAEKHFHKDFPYWIDRNV
                     IKTELHLTTDKSIDQQERYTRQECDIKSKYLNHRMTKKIHKNGASCYLEYRPYHNLTI
                     KEKDLEEYVEANKEILKSNWGIGIDIIEDGLFKKLGKLFK"
BASE COUNT         3221 a         1422 c         2123 g         2825 t
ORIGIN      
        1 actttaatta taaacacagg atattgtaaa gcgcaatcat taattgttta atataaagta
       61 agcgcttaac taaaataagt aggagggtta aaagaatggc tggatcgagt acaagtaaaa
      121 aaggaacgat agcggtatct ttgacgaact atttagattc tggatgtatt gtagcgggag
      181 caagtggact aactttgtgg gcaacacaat tcggacttag cagttttgcg gtgggattac
      241 ttggggctgt gagcgcgaat gcgtttggtt ctgcaattgg cgcacttatt ggtggtcatt
      301 tagcagataa atatggacgg aaatttattt atacgtataa catgttggtg tatatgcttg
      361 gggttacaat cattatgttt gcaatgaatt tcccaatgct attaattgga tttttagtta
      421 caggtctttc tgttggggct ggggttccgg cttcatggac atatatttct gaaatggcgg
      481 atcctagtat aagagctaga aatattggta tatctcaatt tgcttggtca tgtgggccag
      541 caattatctt tactttagga attattgtat ctccacttgg acttttaggt aaccgcttac
      601 ttttcttatc tttattgatt gtagcgtttg ttgcttggca gttacaacgt aaattagagg
      661 agtcgaagga ctgggaagcg gagcaagtga aaatgaaaga aagtggtaat cgtttggaac
      721 acccttttaa aacagcattt tctagtatgg taaatgtaaa atcagtactt ttcttagtgg
      781 gtgtgtactt attttggaat ttagtagcgg gtgcaatggg attttttatg ccgtttgtat
      841 atgaaacggt gggtggtctt tctaatacac aagcgaattt attgcaagct gtattatgga
      901 tactcacagc agcttctaca tactttggct ttgctaaatt tggtgatcga gtaagtcatc
      961 gtggattgtt ttttgtaggg gctttaatgg cagttgcttc ttgggttgta cttacttttg
     1021 ttggaatgtc ttgggttggc ttatggacat ttgttatttt atggggtatt tcagcaggga
     1081 ttggtgcaca agctttttac gcactttggt caacagaact ttttccaaca aaatatcgtg
     1141 gtggggttca aggcgtgatg tttttcttag ttcgtggtag tacaggtgtc tggtcgattg
     1201 tgttcccagt aatcttggca aatcttggct ttactgtggc ggggacaatt atgattggtt
     1261 tacttacagt gtcgctttta atcggtgtaa tttgggcgcc gaaaacacgt ggcagatcac
     1321 ttgatgatat tacgaaggaa cgttacggaa atacaattga ttaaagaaaa ggagctagac
     1381 cagtgaaaca ttatgttgca gtagatattg gtgcatcaag tggtcgatta attctaggga
     1441 aattggtgaa tgaaaaatta caattagaag aaattcaccg ttttaaaaat ggttttacgt
     1501 accgagatgg gcacgaacgc tgggaaattg atcaactgat gcaggaaatc tttattggct
     1561 tggaaaaagt aaagcaacta ggaatttcgg aatgtgtgct tggtattgac acgtggggcg
     1621 ttgactatgt tttgataggg gcttccggtg agaagttggc agatccaatt agttaccgcg
     1681 ataaacgaac tttaaatgcg gtgcagaatt taacgagtga gtatccacga gaatatattt
     1741 ataaaaaaac aggtattcag tttatggaat taaatactct atatcagctg tacgtggaag
     1801 agcgagattt actagaacga gcggagaaaa ttttgttgat tcctgactat attggttatg
     1861 ttctcacggg ggttaaggtg gcagaaacaa caaattcatc gactacacaa atgcttaact
     1921 tgcgagaaca attatttgat aaggatttac tttcgcattt gaacattgat gtggaaaaat
     1981 ttgcgccact gacggatgca ggtacgtatt taggtaaagt aaaagaggag tggctagagg
     2041 agtatgatat tcctaattgt gatgtagtga cagtggcaac acatgataca gcttcggcag
     2101 tggtgggaac tccggcagaa ggagaaaatt gggcattctt gagtagtggg acttggtcgc
     2161 taatagggat ggagctaagt gcgccaatta ataacgaagc agcttttaaa gaaaattaca
     2221 cgaatgaatg gggcgcatat ggaacttatc gctttttaaa aaatattatg gggctttgga
     2281 ttgttcaaga aattgcgcgc atggacgact acaagcatag ttttgctgag atggctgagg
     2341 aagcgagtaa ttatccttat ttcaagcaaa ttattaatgt caatgatgcc aggtttaata
     2401 acccggaaaa catggtggat gagattaaat tgtattgcca agaaactgga caaactatac
     2461 cggagacgat tggagaactg acaaattgtg tgtatggaag tctggcactc tattatgcac
     2521 tagaattgga gaaaatgact gaaattactg gtaagaaaat cgaaaaactt tatattgttg
     2581 gtggaggaag taatgtagct atgctaaatc aattaacagc taaacttgca gggatagaag
     2641 tatttgcggg accttctgaa gcaacggcga ttggaaattt agttgtacaa atgattaatc
     2701 aaggtgaaat cgaatctatg cgtgcgggaa gaaaaattat tcgaaattca tttgaaattg
     2761 gcgaattttc ttgtggtgat gtgagatttg aggaaataaa agaaagattt actaaggtac
     2821 ttgaatttaa ttaggaggct tttagaatgg gacaagaaac agaaattagt aaacgatacc
     2881 aagtggcgaa agaacgttat caagcaattg gagttgatac ggaaaaagcg cttaaaacac
     2941 tgaaagacat taaaatttcg atgcactgct ggcaaggcga tgatgttaaa ggtttcttaa
     3001 atccagatgg cgaacttaca ggcggaatca tggcgaccgg gaattatccg ggtgcggctc
     3061 atactcctaa gcaattacgc caagatttgg aaaaagctta ttcacttatt cctggaaaac
     3121 ataaacttaa cttacatgca atttacgtag atacagatga aaaagtagat ttaaatgaaa
     3181 ttgaacctaa gcatttcact ccatgggtag agtgggcgaa agagcagggt ttgggtctgg
     3241 atttcaaccc aactttcttt tcacatccaa tgtttaaaga caattacact ttagcgtcac
     3301 cagataaaga agttcgcgat ttttggatag agcacgggaa acgctcgcgc aaaatttctg
     3361 agtactttgg gaaagaactt ggtcaaacaa gtattaataa tttctgggtg ccggatggta
     3421 taaaagattg cccgattgat cgctacaccc cgagaaaacg tttgatggaa gctttagatg
     3481 aagtttttgc agaaaaatta gatgaaaaat atacccaaga agctgtagaa agtaagttgt
     3541 ttggtttagg cgcagaggct tatactgtcg gttcgcatga attttatatg ggttacggaa
     3601 ttacgcggga taaattgatt tgcttggatg cgggacattt ccatccaact gaagtcattt
     3661 ctaataaatt atcttctttg gcacttttca gtaaaggcgt aatgttacat gtgagtcgtc
     3721 cagtccgctg ggatagtgac catgtggtga ttatggatga tgaattaatt gaaattggtc
     3781 gcgaattggt gcgcaatgat ttacttggga ttacaaatat cggtcttgat ttcttcgacg
     3841 caacaatcaa tcggattgct gcatgggttg ttggaactag aaatacgcaa aaatcattac
     3901 ttaaagccct tttagaacct acagctgatt tgaaaaaaat ggaactggaa aatgacttta
     3961 catctcgtat ggcaattaca gaagaactaa aagacttccc atttggcgat gtatggaact
     4021 acttctgtga aattaatggt gttccagttg gtcttgactg gttgaaagaa gtaaaagctt
     4081 atgaagaaga tgtattacta aaaagatagg agatagtgac gatgacaaag gatataatgg
     4141 atgctgtttt tattaaggaa atggcgaaaa ctacttcaaa tttataccgg ttaggctggg
     4201 atgaaagaaa cggtggcaat atcacttatt tgttggatga aaaagaagtt gtggaatatt
     4261 tagatgtaaa gcaaatcatt cgcacaattc caatggactt tgacggtaaa aagcttgctg
     4321 gcaagtattt cttagtaact ggttcgggta aatattttaa aaatgttgaa gaagctccag
     4381 ctgtgaattt gggtgtaatt caagtgagtg aagacgggaa agcagttcat ttgttgtggg
     4441 gctatacaga cggcggacta ccaacgagtg aacttccagc gcattttatg agtcacattg
     4501 caagactttc tgtggatccg gaaaaccgcg ttgttatgca ttgtcacgct actcatttgc
     4561 tcgcgatgac atttacacat gagctaacgg aacgagaatt tacaagaact ttatggcaaa
     4621 tgtgtacgga atgtttagtc gtttttccag aaggtgttgg gattattcct tggctggttc
     4681 ctggtacgaa tgaaattgga gaagctacat ctgaaaaaat gaaggaaaat cgtttaatcg
     4741 tttggccaca tcacgggatt tatggtgcgg gaaaatcaat ggatgaaaca tttggattaa
     4801 ttgaaaccgc ggagaaagca gcagaagttt atactattgt gatgtcacaa ggcggtatta
     4861 aacaagcgat tacagatgaa caattgaaag cactgggtga aagatttggc gttgaagcaa
     4921 aggcaggtta tttaattaat taggaggtaa caataatgga acgagtggca tctattatgt
     4981 atttatatcc tggtaatcaa gaagaatata aaaaaagaca cgacgcactt tggccagaaa
     5041 tgaaagaggc tttaaaagca catggagcag ctaactattc gatatttcta gatgaaaaga
     5101 cggatacatt gtttgcttat gtggaagtcg aggataaagc catttatgac aaaatagcag
     5161 aaacagaaat ttgtcaaaag tggtggaaat atatggctcc aattatgaaa tcaaatccta
     5221 ataacagccc ggttgcatta gatttaaaag aagttttcta tttagcataa gaaaagagac
     5281 atgactttaa cgcaaagtca tgtctctttt ttaaatattt ttcggtaacc ggaatacaag
     5341 taggaaacaa acaacgagca gaacaatatt gacgtacata ctcatttgca aactgtcgga
     5401 aaaggcgctt gcttttgaag tagcggcagt atttccaagt gtgcggaaga agactgagcc
     5461 aacaacagca atcccaaagg acgatccaat tcgctgcgct gtattaaaca taccactagc
     5521 tccgccgcga tccacaccag ttactgtgga aagggtgaaa ctattcaatg gtgcaatagt
     5581 caaaccactg ccgataccag cgatgaaaag aggtaagaat aagagccaag cagaaaaagc
     5641 gccgtcgttc aaatggaaaa caatagacac ggtgccaagc ccgatgataa caagcgcaac
     5701 tccaagcatt aagagctttc tacctaatat agggattagt cggtaactat tagaggcagc
     5761 taacacacta cctaacgcaa aaggactaat tgcaagcccg gataaaatag ccgaacgatt
     5821 gaaaccagtt tgccaagtta gcgataggac gaagaaaata ctagtaaaag cggcaaagta
     5881 tacaagcgat aaaagcatac ctgaaacaaa ttgattattt ttaagtaggt tgggagcaat
     5941 taatggctga tttcctttct tttcttggta gacgctccat ttgtaaagaa tgataaagag
     6001 tggaatagat agcgccatta aaagatagtc tatcggtttg aagtcatttg cgccgtttga
     6061 gataagtgga aaaagtaata gtaaaagtgc aatggttagt agcccaactc caggcaaatc
     6121 gaagctaatt tttttcgtgg agacagttct tttgggaaga taaagcattg ctaggactag
     6181 cgttactaac acaaaaggta cgttaacgaa aaaaactgca cgccaaccat ttgtagttcc
     6241 gaaaagttca attaaaagac ctcctgtaag aggtccgatg gcagttccca caccaataac
     6301 agatccaaga attccgaaga ttttcccaag gctttttcca gaatacatat ccataattgt
     6361 ggcattgatt tgcgggaaaa ataatccggc agcaagtccc tgtattaccc gggaaataat
     6421 tagactattt tcggaatctg caaaaccagc tgtcacactc ataattagaa atagcgtaat
     6481 cccgataatg tagatatttt ttcggccaaa tttatccccg agtcgaccag ctaaaataag
     6541 tacaagtcca aaagcaagcg catagcctga aattacccat tcgatggttt cactcgtggc
     6601 atgtagagca gttgtgatat caggtaaggc aacgttgaca attgttgtat ctaataatga
     6661 aataaaagct ccaagcataa ttgaaataag tgctaaagta ttacgtttat tcgtctgttc
     6721 catgaatcat tctccttttt tgaagctttt tgagatattt tccattataa acctaaaaac
     6781 tctgatgata aagaaggagc gaatgtttca cgtgaaacat tttactttgc gagtaagatt
     6841 tgataagctt cttttattaa aagggcgggg gttaacgtat ggaaaatcgg aagcaaatga
     6901 taaaaacgga acgacttttt ttaagcgaaa tgacgttagc tgatactgaa atattgtttg
     6961 gttactggtc agatgattct gttactagat acatgaatat tgaacctttc caaagtttgc
     7021 aaccggttga agaaatgatt cggatgctac gacaactaga aattgaagga aaggcacttc
     7081 gttgtgtgat tattttgcaa gtaacaggag aaatcattgg tacatgcgga tttaattata
     7141 ttgatcatga aaaccatcgg gcagaaattg cctatgatct aggtacacgc ttttggaaac
     7201 ggggttatgc gacggaagca gtgagagcgt tgatggaatg gggaaaagaa tcatttgaat
     7261 tgcaccgaat cgaagcaaaa gtagacccaa gaaatagtgc ttctattgca ttgttagaaa
     7321 agcttggttt ttcgaaggaa ggtttactgc gggattatga aaaaattggt gagacatacc
     7381 aagatgtgca attgttttcg tggatagatg aaattcagta gtaaatgtgt cgattttttt
     7441 actaaatagt gtagataaac caaaagttat tatatcataa agattttgcc ttgtttgttc
     7501 tatttattta ttgctagaat aaggttatct aaaacactta aggagattac acaatgacaa
     7561 aagaatatta ttttataaaa ccagagttaa gttctcctga aacaaaacaa gaaaacattg
     7621 attcttggtt aaagacacaa gataaaactt tttacgatgc acaaattgcg caagaacgtg
     7681 attactgctt ctggtgtaat attgtagaaa cggctaaacc aaattcacgc acgagttata
     7741 cttcgatggc atatacatta aatgaaccca acatgctcaa ttcagccggc aagacgagtt
     7801 ttattttatc agaagaagag gtattataca ttcacacttt atctgttgtt cgtgatggta
     7861 aagtgattga taaattggat gacattaatg taaaagtact tgactatgtt cgtgatgaaa
     7921 atcaagcgag ttttaatgat gagaaaaaag tgacagtact tattcgtgac ttacatttaa
     7981 atgatatctt tattgtggag acgacaattg agcgtaaata tgaagaaagc agcattcgca
     8041 atgacttttt ccgctggatt tattccgcgc caaattccta ctgggcttat ggaaaatacc
     8101 gttttgaatt aaaaaatgaa acggagaaaa aattagaagc gaatttccat tatttccgag
     8161 atgaagcagg cgccatctta gaaaaagaca aagttatggt tgaacataac gaatcttata
     8221 caatcgaaaa agaagattat attggagaag acgcaaaaga acttgaaatt acaccgtttg
     8281 ttgattttgt tacggagcag tcgtatccgc aaattacaaa aacaatcagt gacatttatc
     8341 aaaaattcta tcaagtaaac cttgctgaat ttgcggctga tatagtggct gaactagatg
     8401 agttaccgac attagaccat aaaattaagc atgccatcga ttttgttcaa aaagaagtat
     8461 actatttata taatgaaaca gagatggatg gtcatgaacc tcaagctgct gaagtgactt
     8521 ataaaacgaa acaaggcgat tgtaaggcga aaacagttct tttgaaagtg attttagatt
     8581 atttagacgt gaattcagag cttattttgg ttaactatgg tagtgatgta ttcctaccag
     8641 tttatacacc gtcaccattc aactttaacc atgcgatttt aaaaataacg cataataatc
     8701 aagtctattt tattgatgct acaatgagta gtgatcaagg atttttggct aatcgtcaaa
     8761 aaaatagttt tatgtattat ttggaaatta aatcaggtac ggaattgcaa aaacaagagc
     8821 catttcaaga tgaaattcca tctgtggaag aagtggttta ctgcgatgtt aaagataatg
     8881 cggctgaaat tacttttgaa agaaaattac gcggtggaat ggcaaacggg tcacgagaaa
     8941 tgtttaaaaa tgattccaat aaagacatta tcaatcgata taatttttcg atttatagca
     9001 atatgacttt atataaaaaa tatgaagaaa atgaagttga tagtcatttt agtaatacat
     9061 ccattcaaat tgtggaagat aataaagact taaatgagct ttctataatt tataaagcaa
     9121 ctatttccga tccatatatt gtagaaaata aaaagcgtta tttacatttt tggaattgga
     9181 ataattttat tgatgatggt gcggaaaaac attttcataa ggattttcca tattggattg
     9241 atcggaatgt catcaaaaca gaacttcatt tgacgacaga taaatcaatt gatcagcaag
     9301 aacgctacac acgtcaagaa tgtgacatca aatctaagta tttgaaccat cgtatgacga
     9361 agaaaattca caaaaacgga gcttcttgtt atttagaata tcgtccatat cacaatctca
     9421 ctattaaaga gaaggatttg gaagaatatg tggaagctaa taaagaaatt ctcaagagta
     9481 actggggtat cggtattgat atcattgagg atggattgtt taagaaatta ggtaagttat
     9541 ttaaataaaa taaaaaaagc atcctttata aaagggtgct ttttttataa a
//
LOCUS       DASEAA010000103         9474 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.103, whole genome shotgun sequence.
ACCESSION   DASEAA010000103 DASEAA010000000
VERSION     DASEAA010000103.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9474)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9474)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9474
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.103"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            256..681
                     /locus_tag="U0342_001973"
     CDS             256..681
                     /locus_tag="U0342_001973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphatase family protein"
                     /protein_id="HEM2423316.1"
                     /translation="MTQKLIYFLSQTHIRSAIAEAWAKRLSLSNVKFISGSWHKSKST
                     PFIAEALNEFAIEPPESLSYSPSSELLADADLIVTIYDSAHETAPKFPANIQEKIIYW
                     DIDDPEQEIALPKKWASYQEVCDNIALSVKNLEHVLIEA"
     gene            745..1614
                     /locus_tag="U0342_001974"
     CDS             745..1614
                     /locus_tag="U0342_001974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2423317.1"
                     /translation="MDGYNDLKKAEKAAFLSIFAYLFLAVLKIVAGQLGNSDALLADG
                     LNNTTDIVASVALLIGLRISRIPPDADHSYGHRRTETISSLIASIIMFLVGVQVIWSS
                     IVHIIEKEFATPSMLTAVVALFSGVFMYAIYLYNHRLAKKLDSQAVRAAAYDNRSDAF
                     VSLGAFIGIIGAVLGVPWLDSVTAFLVGILIVYTAIKIFYDAAHTLTDGFDVSKLETI
                     HDLIASVPDVKKVIDIKARMNGNKIWIDATIAVDPELNVVKSHAITEIVEQKIRNEYE
                     GAFTLVHIEPFFE"
     gene            1870..3174
                     /locus_tag="U0342_001975"
     CDS             1870..3174
                     /locus_tag="U0342_001975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HlyC/CorC family transporter"
                     /protein_id="HEM2423318.1"
                     /translation="MILTIKFLIIALLIAISAFFVATEFAIVKMRPSRLDQLIAEKDK
                     RAVLARHIYNHLNAYLSACQLGITISSLGLGWLGESTVEAALHPLFSLMELPQSAITI
                     LSFTIAFLFITFLHVVVGELVPKTLAIDKTEAVALAVARPLHIFYKVMFPFIWILNGS
                     AVFIARLFGLEPASEHEIAHTEDELKIIVGESYKSGEINQSEFRYVNKIFDFDERMAK
                     EVMIPRTEIVTVDTGSTIGELSDIMQNERYTRYPVIDGDKDHVIGVLNLKEILSAYVE
                     HGSNPSFSIDPYVKPIIRVIETIPIKELLFRMQRERSHIAILLDEYGGTSGLVTVEDI
                     VEEIVGDIRDEFDADEIPEIRKIKDGHFIVDAKLLIDEVNNILGTEIEEEEVDTIGGW
                     FLTQNYEVEVGDEIDYDGFIFRVKQGEPHHIEYIEIIKKTND"
     gene            complement(3215..4093)
                     /locus_tag="U0342_001976"
     CDS             complement(3215..4093)
                     /locus_tag="U0342_001976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LysR family transcriptional regulator"
                     /protein_id="HEM2423319.1"
                     /translation="MNLHHLRYFVTLAHMEHYTKAAEKLLITQPSLSHAISSLEQELG
                     IPLFEKEGRNIGLSKAGKVFLDYVEESLDMIDAGVATTKKAANGEGQIDLAFLQTLGT
                     SLIPKLVQEFLQTEPEKQIDFIFHTGVSIDIIQGLKEKKFDIGICSKLENERNIHFTP
                     IAKQELVLIVPKSHPLAEKDWIDLIETVDYPHIAFSKKSGLRPIIDDLFRKIGADYQI
                     AYEIEVDQVIAGMVAQNFGIAVVPNMPILNYVDVKVLPIRSPNWERFFYLAVAKNQTL
                     TPAAEKFKQFMLAHRI"
     gene            4394..5248
                     /locus_tag="U0342_001977"
     CDS             4394..5248
                     /locus_tag="U0342_001977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2423320.1"
                     /translation="MTNANGNLKKCPITISSYTLGTEVSFPKRVKVAAENGFDGIGLR
                     AENYVDALAAGLTDEDMLRILDEHNMKVTEVEYITQWGTAEDRTAEQQKKEQTTFHMA
                     RLFGVKHINCGLLEKIPEEQIIVALGELCDRAEELIIGLEFMPYSGVADLQAAWRVAE
                     ACGRDNAQLICDTWHWARANQTAESIKNVPADRIVSIQLCDVHETPYKELREESLHDR
                     LAPGEGYGDTVGFAKILKEHGVNPRVMGVEVISDSMVATGLEYAALKVYNATKKVLDE
                     AWPEISPR"
     gene            5317..7242
                     /locus_tag="U0342_001978"
     CDS             5317..7242
                     /locus_tag="U0342_001978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FAD-dependent oxidoreductase"
                     /protein_id="HEM2423321.1"
                     /translation="MKFNSMFSPIDIGPMKVPNRFVVSPMCNNYANTDGTLSDTSLAY
                     YKERALGGFGLITFEATVVDVRAKGGANKACLYSDHQIASFKRVIDVCHDAGAKISVQ
                     LQHAGPEGNSKVSGYPLRAASAIASAAGRNTPEAISREELYELIELYGEAALRAKKAG
                     ADAVEVHCAHGYLVSSFLSARTNKRVDEFGGCFENRMRLPRLIIESIRKRVGHSIAIL
                     CRINSTDGVEGGLSVQDSATVAAYLEDCGLDGLHVSRSVHIRDEYMWAPTVLHAGFSS
                     DLVTQIKRAVSIPVITVGRFTEPHYAELMVREGRADLVAFGRQSLADPETPNKAAAGK
                     LDELLPCIACLQGCVANMYAGKPITCLVNPLLGRESEAYSPKTPSKKVVVIGGGVGGL
                     YAGWMAGSRGHDVTVYEASDMIGGQMRLAAYPPGKGDLTNMVRSYIKKCEQFDVEIKT
                     NTPVTPELIQEVAPDAVIIATGATPLVLPIPGIEDAGLIHAVDLLDGKEKCGQKVLVV
                     GGGMVGSETAAFLGEAGHDVTVVELRDEVGADVISEHRKFLMRDFDEYKIKSVTNAKV
                     TSFFEDGVTYSLADNKEHRIDGFDSVVLAMGSRAYNPLEEAIKKMVPETYVIGDAIRA
                     RRALDATKEALDAVLQL"
     gene            7301..8170
                     /gene="aroE"
                     /locus_tag="U0342_001979"
     CDS             7301..8170
                     /gene="aroE"
                     /locus_tag="U0342_001979"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM2423322.1"
                     /translation="MENRISGTTRLLGLIGTPVDHSKSPIMYNYSFQKAGLDYAYLAF
                     DTPIEKVADTIKAIKTFNLRGANVTMPCKSEVLKHMDDLSPAARMIGAVNTIVNEDGK
                     LTGHITDGLGFIANLRDASVDVTGKKMTIIGAGGAATAIQVQCALDGAKEITIFNIKD
                     AFYDKAKQTAASIKQEVPNCIVHIYDLNDTEKLTAEIATSDILVNATLVGMHPNEHET
                     PISDTSVFRKELIVADIIYNPKKTQLLLDAEAAGCKTVGGLGMLLWQGAEAYKLFTGK
                     DMPVSEVKNLYFN"
     gene            8203..9411
                     /locus_tag="U0342_001980"
     CDS             8203..9411
                     /locus_tag="U0342_001980"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2423323.1"
                     /translation="MNAKRFYPTAIALYFTYFIHGIGVSILGQYKQDFAGVWGADKLS
                     DGTFDVSMVIAVIAALGLGRLLTLPISGPFSDKFGRKPSALIGVALYAVYFIGLAFAP
                     NMYIAYAFAFVGGAANSFLDTAVTPSVLEIFTKNGAIANMFTKFSISIGQFVLPFAIG
                     MVAAANMSFRTLFVITMVLIVIDGLIIAFMPFPPMNNNVGGEKAKPEKMKFNATSWAI
                     IGIGFTCTSTFQLWLNCNQELGKLYGMADPSKIQSFYSLGTMCAILITAVLVKKFILP
                     VRILILYPAIATLMLLIIYIVQTPTICLIGGFVIGYAAAGGVLQLAVSTANEFFPTNK
                     GKITSIVMISSSLANYIVLNVASYITKAGGIEGPKYVLLFNVAITVIGILLAIFVNMR
                     YKNESKIATK"
BASE COUNT         2865 a         1744 c         1951 g         2914 t
ORIGIN      
        1 aaaaagcaac tttacgccac caactttaga ccgatttttg taataatttt gtaataatcc
       61 atatttccta catatttatt aacctctttt ttacaatttc ttcattttaa tgtttctagt
      121 aatttaaaaa gggtagatat tactgttacc attacttgtg tctttggtaa taattatcac
      181 ctatatactg tgtacaacaa gtaatggcag caagttttac atgggtacat taatacgccg
      241 gaaaggaatt ggaatatgac gcaaaagctg atctactttt tatcacaaac gcatattcga
      301 agtgccattg ctgaagcttg ggcgaaaaga ctttcactta gcaatgtcaa attcattagc
      361 ggttcttggc ataaatctaa atcaacaccg tttattgcag aagcgttgaa tgagtttgca
      421 atcgagccac ctgaaagttt gtcttattcc cctagctcag aactactggc agatgctgat
      481 ctcattgtaa caatttatga ttctgcacat gaaactgcac caaaatttcc agctaacata
      541 caagaaaaaa ttatttattg ggacattgat gatccggaac aagaaatagc gttaccaaaa
      601 aaatgggcga gttatcaaga agtatgtgat aacattgcct tatcagtaaa aaatttagag
      661 catgtattga tagaggctta gatttcgttg tcccgccatt cgtaggcggg acttttatgt
      721 taaaaagaaa ggagtacata cataatggat ggatacaacg atttaaaaaa ggctgaaaaa
      781 gcggcatttt tgagtatatt tgcctattta tttctagcgg ttttaaaaat agttgctggg
      841 caattaggaa actctgatgc cttacttgca gatggtttga ataatacgac tgatattgtt
      901 gcttctgttg cgcttttaat tggccttaga atttctcgta ttccacctga tgcagatcat
      961 tcatacggac accgacggac tgaaactatt agctctttaa tcgcatctat cattatgttt
     1021 ctcgttggcg tgcaagttat ttggagttca attgttcata ttatcgaaaa agaatttgca
     1081 acaccctcga tgttaactgc tgttgtcgcg cttttttctg gtgtatttat gtatgctatt
     1141 tacttatata atcatcgact tgcgaaaaaa cttgatagcc aagctgtgcg agctgctgca
     1201 tatgataatc gttccgacgc atttgttagt ttaggtgcgt ttatcgggat tattggggct
     1261 gttcttggtg ttccttggct tgattccgtg acggcctttt tggtcggtat tttgattgtt
     1321 tatactgcta tcaaaatttt ctatgatgct gcacatacct tgacagatgg tttcgatgtt
     1381 tctaagctcg aaactattca tgatttaatt gcttctgtac ctgatgtcaa aaaagtaatt
     1441 gatattaaag cgcgaatgaa tggaaataag atttggatcg atgcaactat cgctgtggat
     1501 cctgaactaa atgtagttaa aagtcatgca atcaccgaaa tcgttgaaca aaaaattcgt
     1561 aacgaatacg aaggtgcgtt cactttagtt catattgaac cattttttga ataatattca
     1621 ttgtcaataa tcgtaaagtc aactataatt tagattaaag tatcatttgc tgggagggaa
     1681 tattcgatgg ggcagagaaa ctaattcaca taaattatct aactagaatg aaaaataggc
     1741 aacaacacat tggaggagtt ctcttccagg acggtttttc ttctatatag atagttttat
     1801 aatatgctta tttatattaa actaggaggt gtttgcctta gcagaaacta tttctgtcaa
     1861 ggcgatttat tgatattaac cattaaattt ttaattatag ctttacttat tgctatatca
     1921 gcatttttcg tggcaacaga atttgcgatt gttaaaatgc gaccaagccg tttggaccaa
     1981 ttaattgcgg agaaagataa acgcgcagtc ctcgctagac atatttacaa tcatttgaac
     2041 gcttacttat cagcctgcca actcgggata acgattagtt cccttggact tggttggttg
     2101 ggggaatcta cggtagaagc ggcgttacat ccgttattta gcttaatgga acttccgcaa
     2161 tcagctatta cgattctatc cttcacgatt gcctttctat ttatcacatt cttgcacgta
     2221 gttgttgggg aacttgtacc gaaaacactg gcgattgata aaacagaggc agttgcactt
     2281 gcggtagctc gtccactgca tattttttat aaagtgatgt tcccgttcat ttggatttta
     2341 aatggttctg ccgttttcat cgcacgtctt tttggtttag agccagcttc cgagcacgaa
     2401 attgctcata ccgaggatga attaaaaata atcgtcggcg aaagttataa gagtggtgaa
     2461 atcaaccaat cagaattccg ttatgtgaat aagatttttg attttgatga acgtatggcg
     2521 aaagaagtca tgattccgcg aacagagatt gttaccgttg atacgggctc tactatcggg
     2581 gaattatccg acattatgca aaatgaacgc tatacgcgct atccggttat tgatggcgat
     2641 aaagaccacg ttatcggcgt acttaattta aaagaaattt tgtcagcata tgttgagcat
     2701 ggatctaatc caagttttag cattgatcct tacgtaaaac caattattcg tgtgattgaa
     2761 acaattccga ttaaagaatt acttttccgt atgcagcgtg aacgttccca tatcgcgatt
     2821 ttacttgacg aatatggtgg tacttctgga cttgttacgg ttgaagatat tgtagaggaa
     2881 atcgttggtg atatccgcga tgaatttgat gccgatgaaa ttccagaaat tcgcaaaatc
     2941 aaagacggtc actttattgt ggatgcgaaa cttcttattg atgaagtaaa taatatttta
     3001 ggtactgaaa ttgaggaaga agaagtcgac acaattggcg gctggttctt aacgcaaaat
     3061 tatgaagtag aagttgggga cgaaattgat tacgatggat tcattttccg cgtaaaacaa
     3121 ggcgaacctc atcatattga atatatcgaa atcatcaaaa aaacgaatga ctaatcaaaa
     3181 agtagctatc cctctcgtag gatagctact ttttttatat acgatgcgct aacataaatt
     3241 gcttgaactt ctcagctgcg ggcgttagcg tttggttttt cgcgactgcg agataaaaga
     3301 atctctccca gtttgggctt ctaattggta agactttgac atccacataa tttaaaatcg
     3361 gcatgttcgg aactacagca atcccaaagt tttgcgcgac cattccggca atgacttgat
     3421 ccacttcaat ttcatatgca atttgataat cggcaccaat ttttctgaac aaatcatcga
     3481 taattggacg caaaccactt tttttcgaga atgcgatatg cggataatct accgtttcga
     3541 ttaaatcaat ccagtctttc tcagcaagag gatggctttt ggggacgatg agcactaatt
     3601 cttgtttggc aattggcgta aagtgaatat ttctttcatt ttcaagttta gaacaaatac
     3661 caatatcaaa tttcttttct tttaggcctt gaatgatatc aatcgaaaca cctgtatgga
     3721 aaataaaatc gatttgtttt tctggttcgg tttggagaaa ttcttgaaca agctttggta
     3781 ttagagacgt gccaagtgtt tgcaagaatg ccaagtcaat ctgcccttcc ccattcgccg
     3841 cttttttagt cgtcgcgaca cccgcatcaa tcatatctaa ggactcttcc acataatcaa
     3901 gaaatacttt gccagcttta cttaacccta tattccgccc ttctttttca aataaaggga
     3961 tacctaattc ttgctctaag gaggaaattg cgtgacttaa actaggctgt gtaatcagca
     4021 atttttcagc tgcttttgtg taatgctcca tgtgcgccag tgtgacgaag tatcgtaaat
     4081 ggtgtaaatt catgcttctc tcctaactaa aaagttatct atgcaattta tctatcaatt
     4141 aatagaacaa taccaatttg tttttatgga atagtcataa tacaattaga ctgtagttac
     4201 gccagtgaaa taaactattc cttaaaaacc aatatacggt agaataggtt aactgtccag
     4261 ttccattttc aactattgaa ggcgttatca catcagaggt ttttaattaa gcggaattaa
     4321 tttttttact ggtgtttgtg aaaatattat caaagtttct tgtaattttt attatggaga
     4381 ggagataatt tttatgacaa atgcaaatgg caacctaaaa aaatgcccca tcacgattag
     4441 ctcttatacg cttggaacag aggtatcttt tcctaaacga gtaaaagtcg ctgcggaaaa
     4501 cggttttgac ggaattggct tgcgtgcaga aaactatgta gatgcactag ctgccggatt
     4561 aacggatgaa gacatgttgc ggattttaga cgagcataac atgaaagtaa cagaagtgga
     4621 gtacataact cagtggggaa ctgccgaaga tcgtacagca gaacaacaaa agaaagagca
     4681 aacaactttc cacatggcgc gattatttgg cgtcaaacat attaattgtg gtttgcttga
     4741 aaaaatccct gaggaacaaa tcatcgtcgc gcttggtgaa ttatgtgacc gcgcagaaga
     4801 attaattatt ggtttagaat ttatgccata tagcggtgta gcagacttac aagcagcttg
     4861 gcgagtagca gaagcatgcg gccgagataa tgcgcaactt atttgtgaca cgtggcactg
     4921 ggctagagca aaccaaacag cagaatctat caaaaacgtt cccgctgatc ggattgtttc
     4981 catccaacta tgcgatgtcc acgaaacgcc ttacaaagaa cttcgtgagg aatcacttca
     5041 tgatcgtcta gctcctggag aaggctacgg agatacggtc ggttttgcaa aaattttaaa
     5101 agaacatggt gtaaatccac gtgtgatggg agtcgaagtt atttcagact ctatggtagc
     5161 aactggttta gagtatgccg cccttaaagt atacaatgcc acgaaaaaag tattagacga
     5221 agcatggcca gaaatttctc cacgctaaac acctactcgc ttatgtgaaa ataataacgt
     5281 agtaggaaga ctccctgtga aaggaatgtg ttatttttga aatttaattc gatgttttca
     5341 cctattgata tcgggccgat gaaggtgcct aacagatttg tcgtatcgcc aatgtgtaac
     5401 aactatgcaa atacagatgg aactttatca gatacttccc ttgcttatta caaagaacga
     5461 gcgcttgggg gttttgggct tattactttt gaagcaacgg ttgtagatgt acgcgcaaaa
     5521 ggtggcgcaa ataaagcatg cctatatagt gatcatcaaa ttgctagttt taaacgagtg
     5581 attgatgtat gtcacgatgc tggagcaaaa atttctgttc agttacagca cgctggacca
     5641 gaaggaaatt ccaaagtatc tggttatcct ttaagagcag cctcagcaat cgcctctgct
     5701 gcagggcgta atactccgga agccatttcg cgtgaagaac tttatgagtt gattgaactt
     5761 tacggagaag ctgctttacg agcaaaaaaa gcgggcgccg atgcggttga agttcactgc
     5821 gcacatggtt atctagtaag tagtttctta tctgcacgga cgaacaaacg tgtggacgag
     5881 tttggtggct gttttgaaaa ccgaatgcga ttacctcggc ttattattga aagtattcgt
     5941 aaacgtgtcg gtcattccat cgcaattctt tgccgaatta atagcacgga tggtgtggaa
     6001 ggcggactaa gtgttcaaga tagcgcaaca gttgcagctt atttagaaga ttgtggtttg
     6061 gatggtttgc atgtttctcg tagcgtccat attcgtgatg aatacatgtg ggcgccaacc
     6121 gtattgcatg caggatttag ctctgatctt gtaacacaaa tcaaacgcgc tgtttctatt
     6181 cctgtaatta ctgtgggtcg tttcacagag ccgcattacg cggaattaat ggttcgtgaa
     6241 ggccgcgctg acttggttgc tttcgggcgt cagtctttag cagatccaga aacaccaaac
     6301 aaagctgctg ctggaaaact agacgaatta cttccttgca tcgcttgtct tcaaggttgc
     6361 gttgctaata tgtatgccgg aaaacccatt acttgtttag taaatccgtt acttggacgt
     6421 gaatccgaag cttattcacc taaaactcca agtaaaaaag tagttgtcat tggcggtggt
     6481 gtcggcgggc tttatgctgg atggatggct ggatcccgtg gtcatgatgt gacagtttat
     6541 gaagcatcag atatgattgg tggtcaaatg cgcttagctg cctatcctcc tggtaaaggc
     6601 gacttaacaa acatggttcg aagttacatc aaaaagtgtg aacagttcga tgtcgaaatt
     6661 aaaacaaaca cacctgtaac accagaactt attcaagaag ttgccccaga tgccgtcatt
     6721 attgcaactg gcgccactcc acttgttttg ccgataccag gtattgagga tgctggactt
     6781 atccacgcag ttgacttact tgatgggaaa gagaaatgtg gtcaaaaagt gctcgtagtt
     6841 ggcggaggta tggttggtag tgaaacagct gcatttttag gtgaagctgg tcatgacgtc
     6901 accgttgtag aacttcgcga tgaagtcgga gcagacgtta tttctgaaca tcgtaaattc
     6961 ctgatgcgtg atttcgatga atataaaatc aaaagtgtta cgaatgcaaa agtaacgagt
     7021 ttctttgaag acggggtaac ctattcccta gcggataaca aagaacaccg aatcgacgga
     7081 tttgactctg ttgttctagc aatgggatca agagcctata acccactgga agaagctata
     7141 aaaaaaatgg tacccgaaac ctatgtcatc ggtgatgcta ttcgtgcgcg ccgggcattg
     7201 gatgcaacaa aagaagcact agacgctgta ttacaattat aatttatcat tctactcgct
     7261 gtaatgtgca gcgagtagga ttcattcgga ggaaaacaaa atggaaaata gaatttcagg
     7321 aacgactagg cttcttggct taattgggac acccgtagac cattcaaaat ctccaatcat
     7381 gtataattac agttttcaaa aagcggggtt ggattatgct tacctagctt ttgacacacc
     7441 tattgaaaaa gttgctgata ctataaaagc aatcaagaca tttaatctgc gtggcgcaaa
     7501 cgtgaccatg ccttgtaaaa gtgaagtttt aaaacacatg gatgaccttt cccctgctgc
     7561 tcggatgatt ggcgctgtta acactatcgt aaatgaagac gggaagctaa ctgggcatat
     7621 aacagatggc cttggtttta ttgcaaattt acgagatgct agtgtagatg tcaccggcaa
     7681 aaaaatgact ataattggtg ctggtggtgc agctacagca atccaagtcc agtgtgcact
     7741 tgatggggcc aaggaaatca ccatttttaa tattaaagac gctttttatg acaaagcaaa
     7801 acaaactgct gcttccatta aacaagaagt gccaaattgc atcgtacata tttatgattt
     7861 gaacgataca gaaaaactaa ctgcggaaat tgccactagc gatatccttg ttaatgcgac
     7921 actcgttggc atgcatccga atgaacacga aacacctatt agcgatacat ccgtttttag
     7981 aaaagaactt atcgttgcag atattattta taaccctaaa aaaacgcaac ttctactaga
     8041 tgctgaagct gctggttgta agactgtagg cgggttagga atgcttttgt ggcaaggcgc
     8101 tgaagcatac aaattgttta ctggtaaaga tatgccagtt tcagaagtaa agaatctata
     8161 tttcaactaa taaattcatc aggatttcga gaggagaaaa aaatgaacgc aaaaagattt
     8221 tatccaacag caatagcact ttattttact tattttattc acggtattgg ggtatccatt
     8281 cttggccaat acaaacaaga tttcgccgga gtatggggag cagataagct ttctgatggc
     8341 acatttgacg taagcatggt tatcgcagtt atcgcagcac ttggtttagg tcgcttgctg
     8401 acattaccaa tttctggacc cttctcagat aaatttgggc gtaaaccgtc cgcattaatc
     8461 ggtgttgcgt tatacgcagt ttatttcatc ggtcttgctt ttgcaccgaa tatgtatatc
     8521 gcttacgctt tcgcttttgt aggaggagcg gcgaactcat tcttagacac agccgtaaca
     8581 ccatcagttc tagaaatttt cacaaaaaat ggcgccattg ccaatatgtt tactaaattc
     8641 tctatctcta tcggacaatt tgtattacct ttcgcaatcg gtatggttgc ggcggcaaat
     8701 atgtcattcc gcacactatt cgttattaca atggtcttaa tcgttattga tggcttaatc
     8761 atcgcattta tgccattccc tccaatgaac aataatgttg gcggcgaaaa agcaaaacca
     8821 gaaaaaatga aattcaatgc aactagttgg gctataatcg gtattggttt tacgtgtaca
     8881 tccactttcc aactatggct aaactgcaac caagaacttg gaaaattata cggtatggct
     8941 gatccaagta aaattcaatc attctactca ctaggaacaa tgtgcgcaat tctaattacc
     9001 gctgttctcg tgaaaaaatt tattttgcca gtccgaattc taatcctata tccagcaatt
     9061 gccactttaa tgttgctaat tatttatatc gtacaaacac caaccatttg cttaattggt
     9121 ggatttgtta tcggatacgc tgctgctggg ggagttctac aactagctgt atcaactgcc
     9181 aatgagtttt tcccaacaaa caaagggaaa atcacttcaa ttgtcatgat ttcttccagt
     9241 ctagcaaact atattgtttt aaacgttgca agttatatta ctaaagctgg tggtatcgaa
     9301 ggtccgaaat atgtgttatt attcaatgta gcgataactg ttattggtat cctactagca
     9361 atctttgtca atatgcgtta caaaaacgaa tctaaaattg ctactaaata atttattgtt
     9421 caactgagca tttatgatgc tcagttgaac ttacatatca tttgtgaagt aaag
//
LOCUS       DASEAA010000104         9297 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.104, whole genome shotgun sequence.
ACCESSION   DASEAA010000104 DASEAA010000000
VERSION     DASEAA010000104.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9297)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9297)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9297
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.104"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            85..1452
                     /gene="fumC"
                     /locus_tag="U0342_001981"
     CDS             85..1452
                     /gene="fumC"
                     /locus_tag="U0342_001981"
                     /EC_number="4.2.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fumarate hydratase"
                     /protein_id="HEM2423324.1"
                     /translation="MERIERDTLGEISVDATKYWGAQTERSKRNFAIGDNPMPIEIIY
                     AFAQLKKATAKVNAAEGKLSEEKAIAIGQVCDQIIQGELDEHFPLVVWQTGSGTQSNM
                     NVNEVIAHVANLTLGEGQIHPNDDVNMSQSSNDTFPTAMHIAAYGALVTKLLPEITKM
                     EAVLAEKKNKYMHLVKIGRTHLQDATPLTLGQEISGWEACLTNNKNYLETSMKAILPL
                     AIGGTAVGTGLNASRDFGDKVAEELMKQTGYPFTSDSNKYFALTSHSPINFVHGSIRS
                     LASDLMKIANDIRLLASGPRSGIGELTIPANEPGSSIMPGKVNPTQCEAMTMVAAQVM
                     GNDVTINVAASQGNFELNVYKPVIIFNFLESVKLLSDSMRSFRLHCLEGLTANEKVIE
                     TKVNDSLMLVTALNPHIGYEKAAKIAKLAFDENTTLKEAAIKTGFVTEKQFDLWIDPL
                     KMTNL"
     gene            1556..2689
                     /locus_tag="U0342_001982"
     CDS             1556..2689
                     /locus_tag="U0342_001982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF445 domain-containing protein"
                     /protein_id="HEM2423325.1"
                     /translation="MSVLFTILLMAVIGGFIGAMTNYIAIRMLFRPYKAIYLFNKRLP
                     FTPGLIPKRRDELAEHIGKVVVSHLLTEDAIRARLLDENLQKEITDTITKMFHEKMQL
                     ETTPNELLHHFGYENAEIRSMTWVEKTLEKEINHFLTTKKTTKMSDLIPTMLESELTT
                     KLPHVTERITSKMTLFVSSEEGKIQIKQMLQKFFEEHGKMGSMARMFINIDSFSEKIQ
                     QEGLKLIGQEDTKNLINQLLTTEWKNFEAKELQELIPTEKQAHLAGQLTSELIQTFPH
                     EKLFNQPIQEMLRGYEAAITEKVIPFAVERMLDFVATHSAEIVERMDLAKLVETQIAT
                     FSLPEIEKLVVEISGRELKMITYLGGILGGFIGIIQGVLAMWI"
     gene            2771..3124
                     /locus_tag="U0342_001983"
     CDS             2771..3124
                     /locus_tag="U0342_001983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlbF/YmcA family competence regulator"
                     /protein_id="HEM2423326.1"
                     /translation="MAVNIYDLAHDLDKGIRETPEFISLQDAYREVNENADAKAKFER
                     FRDVQVTIQEKQMTGQEIDDETVDVAQQVAQEVQENELIVKLMEKEQAMSTIINDLNR
                     IIMTPLQDLYNVAND"
     gene            3267..4502
                     /locus_tag="U0342_001984"
     CDS             3267..4502
                     /locus_tag="U0342_001984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HEM2423327.1"
                     /translation="MKEIQFLHMADLHLDSPFIGLSTLPQPLFSAIQESTFQSLERIT
                     TVAIKEAVDFVLIAGDIYDSEDQSVRAQARFSKEMKRLEVANIPVFMIHGNHDFIEKH
                     KEKLTLPSNVHVFSEQVEVMSHKTATGVSVNIYGFSYNERHIRSSRVDKYKIQGNADF
                     HIALLHGSEVSSSEEHDVYAPFRVQEISKKGFDYWALGHIHKRQLLAESPSIYYPGNI
                     QGRNRKESGEKGASIITLSEASTTIDFIGTSPIIWEEAVITLPENSEINAFYRETTKL
                     LESYQGRSHSYFLHIIVKMENKQKIDTNDWLQMLQEEVEITDNTFVWVHKLTTEITNQ
                     SNSQTWYESHLAGEEIKHSFETLQDESAFYQAVEALYLESGVSRYLDDLSEIDRERLL
                     HDALMELGRTLAEVEGDDK"
     gene            4499..7222
                     /locus_tag="U0342_001985"
     CDS             4499..7222
                     /locus_tag="U0342_001985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2423328.1"
                     /translation="MRITSIDIIGYGKWSDAHFNNIANFQVFYGENEAGKSTIMAFIH
                     SILFGFPTKQQSIPRMEPKNGGPYGGRLTLEDTPLGKVIIERLKGKATGDVRIYYGDG
                     QTAGEEKLPEIIGEIDRNTYEAIFSFDIHGLQNIHQWKKKEFERYLLATGTTGSDALL
                     KGAEALQKKLDSLYKPSGRNPLINQQLKKVKEAQHAFQNAKKQNAQYEQLINEKEQAI
                     VRQTELQKEKTTMRVELDALATLADLWPLYQEWKALSNKASETTEATFPPDGVIRLEH
                     LNLREKEWQNQLIQLEERQKNLISNNNYEHSAFFAENEAEVTYLIETYAAFGEREIQL
                     KNLKQEIKFQQVDTKQPLRIWSSELEQTMIHLKEKEQSHKEQQHDIQLKLKFTNNSEE
                     KLQKKIDQIEAEMWDNKTFQQAKEKMQDSPKTSKTKTMVSLGIFAVAFVLMIVFQAIW
                     SVALVFVSALIVGYAFITTGKSSPTNNEQILAFLEQKKIRQEWQQLLNEMDMVASQIA
                     ELRAAENKLSENIYQHTMELRHFFSDLGINTEPSSNWHYELSIYKKNSEKRQLAMELI
                     SKLEPLAEKQEAYRARLENLKLPIDYTDTEEKITFLRQGLLYYRNHLTENAKLAEKLE
                     QVTMQLDLVKQDLLLVKKEKADLLERANVSNEEDFRMAAMRVKEEQKWRERLVLIEAQ
                     LEPEKREALNRYENQATIKEKELQLEESLRQIELEQEQLHASLAAQNHAIDKLEEGGT
                     FAVLMQEFYSEKSKLQQISAEWTETKLALQMLQNTMQQLQEGKLPKTLKLASEYFNHL
                     TSGNYRKVYLQDNRLQVESKDRIPFFPEELSQATKEQLYLAIRFALIDVIHKDFPLPI
                     IIDDGFVHFDSSRMGQMMQLLQKRKSENQVIFFTCHQETRKYFSSEDIRVL"
     gene            7267..8208
                     /gene="yhaM"
                     /locus_tag="U0342_001986"
     CDS             7267..8208
                     /gene="yhaM"
                     /locus_tag="U0342_001986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3'-5' exoribonuclease YhaM"
                     /protein_id="HEM2423329.1"
                     /translation="MEKRLLDFEVGETVDLFLLIKSSVKGTASNGKPFLSLVLQDKSG
                     ELEAKLWDVKESDEANYGVQQIVHLMGDIQNYRGRKQLKIRQIRQATALDGVSASEFM
                     ETAPINKEEMADEITQYIFEMKNANLQRITRALLKKYQDDFYDYPAAMRHHHEFVSGL
                     SFHVVSMLRLAKSVADLYPSVNRDLLYAGVILHDLGKVIELSGPVSTTYTLEGNLIGH
                     ISIVVEEVSKIADELSIDGEEVVVLKHVLLSHHGKGEWGSPKPPLVREAEILHQIDLM
                     DASLNMMDKVLKHTKPGEFSERVFGLDNRSFYNPIFE"
     gene            complement(8249..9130)
                     /locus_tag="U0342_001987"
     CDS             complement(8249..9130)
                     /locus_tag="U0342_001987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="foldase"
                     /protein_id="HEM2423330.1"
                     /translation="MKKKLILGLVMMMALFSLAACGGGGDVVKTDSGDVTQDELYDAM
                     KDKYGSEFVQQLTFEKILGDKYKVSDEDVDKKFNEYKSQYGDQFSAVLAQSGLTEKSF
                     KSQLKYNLLVQKATEANTDTSDKTLKKYYETWQPDITVSHILVADENKAKEVEQKLKD
                     GAKFADLAKEYSTDTATKDNGGQLAPFGPGKMDPAFEKAAYALKNKGDISAPVKTQYG
                     YHIIQMDKPATKTTFEKDKKAVKASYLESQLTTENMQKTLKKEYKDANVKVEDKDLKD
                     AFKDFDGSSSSDSDSSK"
BASE COUNT         3329 a         1570 c         1798 g         2600 t
ORIGIN      
        1 ccaaaaacgg aatagcgaac atttttcatg tgttttgcga aaacatccgc tttatactaa
       61 aatagaataa aaaggggtgg cgacatggaa cgaatagagc gagatacgct tggagaaatt
      121 tctgtagatg cgacgaaata ttggggagcg caaacagaac gaagtaaaag gaactttgct
      181 attggtgata atcctatgcc gatagaaatt atatatgctt ttgctcaatt aaagaaagcc
      241 actgcaaaag taaacgcagc agaaggaaaa ctatccgaag aaaaagcgat agcgattggc
      301 caggtttgtg atcaaatcat tcaaggagaa ctagatgagc attttccttt agtcgtttgg
      361 caaaccggaa gcggaacgca gagcaacatg aatgtcaatg aagttatcgc acatgttgcc
      421 aacttaactt taggcgaagg acaaattcat ccgaatgatg atgtcaacat gtcgcaaagc
      481 tcgaacgaca catttccaac agcgatgcat atcgctgcat acggggcttt agtaacaaaa
      541 cttttacctg aaataactaa aatggaagct gttttggcag agaagaaaaa taaatacatg
      601 catctcgtta aaattggcag aacacatttg caagacgcaa ccccattaac acttggccaa
      661 gaaattagtg gctgggaagc atgtcttaca aataataaaa actatcttga aacaagtatg
      721 aaagcaattt tgccacttgc gattggtggg acggcagttg gaactggctt aaatgcctca
      781 cgtgattttg gtgataaggt tgccgaagaa ttgatgaaac aaacgggata tccttttact
      841 tctgattcca ataagtattt tgctctaact agtcatagtc cgattaattt tgttcatgga
      901 tccattcgta gccttgcttc ggatctaatg aaaattgcta atgatatccg tttattagca
      961 agtggaccac gtagcggcat aggtgagtta acaatcccag ctaatgaacc aggaagctcc
     1021 attatgccag gaaaagtaaa tcctactcaa tgtgaagcaa tgacgatggt agcggctcaa
     1081 gtcatgggaa atgatgtgac aattaatgtt gccgccagcc aaggaaactt tgaactcaat
     1141 gtctacaagc cagttatcat ttttaatttc ttagaatctg tcaaactgct ttcagatagc
     1201 atgcgttcgt tccgattgca ttgtttggaa ggacttactg cgaatgaaaa agttattgaa
     1261 acaaaagtaa atgactccct aatgcttgtg acagcattga atccgcatat cggctatgaa
     1321 aaagctgcca aaattgccaa gctggctttt gatgaaaata cgacattaaa agaagcggca
     1381 atcaaaaccg gttttgtgac agaaaaacaa tttgatttat ggattgatcc gttaaaaatg
     1441 actaatttgt aatctcatac tttagaatga acttccctag aaacaattgt tgtctaggga
     1501 tttttcacgt ataatgaaac cacttttact agacaaatat taggagatgc aaaacatgtc
     1561 agtgttattt acgatacttt taatggctgt gattggcgga tttatcggcg caatgacgaa
     1621 ttatatcgcc atacgaatgc tttttcgccc ttacaaagcc atttacctat ttaataaacg
     1681 tttaccattt actccaggtt taatccctaa acgacgtgat gaactagccg aacacatcgg
     1741 aaaagtagta gtgagtcatt tgcttacaga agacgccatt cgtgctcgtc tgctagatga
     1801 gaatttacaa aaagaaataa cagatactat tacgaaaatg ttccatgaaa aaatgcaatt
     1861 agaaaccaca cccaatgaac tcctccatca tttcggttat gaaaatgcag aaattcgttc
     1921 tatgacatgg gtagaaaaaa ctttagagaa agaaatcaac cactttctaa ctactaaaaa
     1981 aacgacaaaa atgagcgatt taattccaac tatgttagag tcagaactaa caactaaact
     2041 accgcatgta acagaaagaa tcacgagcaa aatgacattg tttgtatcga gtgaagaagg
     2101 caaaattcaa attaaacaaa tgctacaaaa attctttgaa gaacacggca aaatgggaag
     2161 catggctaga atgtttatta atattgatag cttttctgaa aaaattcaac aagaaggctt
     2221 aaaactcatc gggcaagaag acactaaaaa tctaattaat caacttctaa caacagaatg
     2281 gaaaaatttc gaagcaaaag aattacaaga gcttatcccg actgaaaagc aagctcattt
     2341 agctggacaa cttacttctg aacttatcca aacttttcct cacgagaaat tatttaatca
     2401 acccattcaa gagatgctac gtggctatga agcagctatt acagaaaaag taattccttt
     2461 tgcagtagag aggatgcttg attttgtagc aacacatagt gcagaaatag tagagagaat
     2521 ggatttggcg aaactcgttg aaacacaaat tgccactttt tctttacctg aaatcgaaaa
     2581 acttgttgta gagatttctg gtagagagtt aaaaatgatt acttatttag gtgggatttt
     2641 aggtggattt attggaatta tccaaggtgt tctcgcaatg tggatttagt tcttttatac
     2701 tggaataacc ggcgactttt tgttatagtg aaacagaagt gacaaataca gatatttgga
     2761 ggatttatca atggcagtta atatttatga tttagcacat gatttagaca aaggaattcg
     2821 tgaaacacct gaattcatca gcttacaaga tgcataccgt gaagtaaacg aaaatgcaga
     2881 tgcaaaagca aaattcgaac gttttcgcga tgttcaagta actatccaag aaaaacaaat
     2941 gactggtcaa gaaattgacg acgaaacagt agatgtagca caacaagtag cgcaagaagt
     3001 tcaagaaaac gaactaatcg ttaaattaat ggaaaaagag caagcgatga gtacaattat
     3061 caatgatcta aatcgcatta tcatgacgcc attacaagat ctttataatg tagctaatga
     3121 ttaattttca ttaaaccaag tggctctatt atttgttatt tatttagcag ataatagggt
     3181 cattttttta ttggaaatgc ttgtacctaa cgtaatagta agatataata agaacgtata
     3241 ttcggttttt ataggaggcg aaagtcatga aagaaatcca atttttacat atggctgatt
     3301 tacatttaga tagtcctttc atcgggcttt cgacactacc acagccactt ttttctgcca
     3361 tacaagaaag cacatttcaa tcattagaac gaattacaac tgtggcgata aaagaagcag
     3421 tagatttcgt tttaattgct ggagatatat atgatagtga agatcaaagt gtccgtgctc
     3481 aagcgcgttt ttcaaaagaa atgaaacggt tagaagtggc gaacatcccc gtgtttatga
     3541 ttcatggaaa tcatgatttt atagaaaagc ataaagaaaa actcacatta ccaagcaatg
     3601 tgcacgtttt ttcagagcaa gtagaagtaa tgtcgcataa aaccgccact ggtgtgagcg
     3661 ttaatattta tggatttagt tataatgaac gtcatattcg ctcaagccga gtagataaat
     3721 acaagattca aggtaatgct gattttcaca ttgcgttatt acatggctca gaagtatcta
     3781 gtagcgaaga acatgatgtg tacgccccat ttcgtgtaca agaaattagc aaaaaaggtt
     3841 ttgactactg ggcactaggt catattcata agcgacaatt gcttgcagag tctcctagca
     3901 tttattaccc aggaaatatt caaggtcgaa atcgcaaaga atcaggtgaa aagggcgcca
     3961 gtatcattac attatcagaa gcaagtacaa ccattgattt cattggaaca agtccgatta
     4021 tttgggaaga agctgtaatt accttaccag aaaatagtga gataaatgcc ttttaccgag
     4081 aaactactaa gttgttagag agctatcaag gaagaagtca ctcttatttt cttcatataa
     4141 ttgttaagat ggaaaataaa caaaaaatcg atacgaatga ttggttacaa atgcttcaag
     4201 aagaagtaga aatcacagat aacacatttg tatgggtaca caaattaaca acggagataa
     4261 cgaatcaaag taattcacaa acatggtacg aatcacattt agcaggagaa gaaatcaagc
     4321 attcgtttga gacactacaa gatgaatctg ctttttatca agcagtagag gctctgtatc
     4381 ttgaaagtgg agtgagtaga tacttggatg atttgtctga aattgatcgt gagaggctac
     4441 tacatgatgc tttaatggaa ttagggagga cgcttgcaga agtggaaggt gatgataaat
     4501 gagaataaca tctattgata tcattggtta cggaaaatgg tccgatgctc attttaataa
     4561 tattgccaat ttccaagtat tctatggtga aaatgaagcc ggaaaatcaa ctattatggc
     4621 ttttatacat agtattttgt tcggtttccc aacgaaacaa caatcgatac cgcgcatgga
     4681 gccaaaaaac ggtggaccat atggtggaag attaacacta gaagacacac ctttaggaaa
     4741 agtcatcatt gaacgcttga aaggaaaagc aacgggagat gttcggatat attacgggga
     4801 tggccaaacc gctggagaag aaaaattacc agaaattatc ggtgaaattg atcgaaacac
     4861 ttatgaggct attttttcat ttgatataca cggactacaa aatattcatc aatggaaaaa
     4921 gaaagaattt gaacgctatt tgttagcaac tggaacaaca ggatcggacg ctcttctaaa
     4981 gggagccgaa gcattacaaa aaaaattaga tagtctatat aaaccaagtg ggcgaaatcc
     5041 actaattaac caacaactaa aaaaagtaaa agaagcccaa cacgcttttc aaaacgcaaa
     5101 aaaacaaaat gcgcaatatg aacaattaat caatgagaaa gagcaagcga tagtaagaca
     5161 aacagagcta caaaaagaaa aaacaacaat gcgagttgag ttagatgcat tagcaacatt
     5221 agcggatttg tggccgttat accaagaatg gaaagcactc agtaacaaag cttctgaaac
     5281 aacagaagct acttttccgc ctgatggagt tattcgttta gaacacttga atctccgaga
     5341 aaaagaatgg caaaatcaac ttatccaact agaagaacgc caaaaaaatc taattagcaa
     5401 caataattat gaacatagtg ctttttttgc cgaaaatgaa gcagaagtta cttatctaat
     5461 cgaaacttat gcagcttttg gagagcgaga aatccagtta aagaatttaa agcaagagat
     5521 taagtttcag caagtcgaca caaaacaacc acttagaata tggtcgagcg aattagaaca
     5581 aacaatgatt cacttaaaag aaaaagaaca gtcccacaaa gagcaacaac atgatatcca
     5641 gctaaaatta aaattcacta ataactccga agaaaaactc caaaaaaaga ttgatcaaat
     5701 agaagcggag atgtgggata ataaaacatt ccaacaagca aaagaaaaaa tgcaggatag
     5761 tcctaaaact tctaaaacta agacgatggt ttccttgggc atatttgcag tagcgttcgt
     5821 cttgatgata gttttccaag ctatttggag tgtagcactt gtttttgttt ctgcacttat
     5881 agtgggttat gcttttatta ctactggaaa atcttctcca acaaataatg agcaaattct
     5941 agctttttta gaacaaaaga aaataagaca agaatggcaa caacttttga acgaaatgga
     6001 tatggttgct tcacaaattg ctgaattaag agcagctgag aataaactaa gcgaaaatat
     6061 ctaccaacat acgatggaac ttagacactt cttttctgac ttgggaataa acactgaacc
     6121 tagttcgaac tggcattacg aacttagcat ctacaaaaaa aacagtgaaa aaaggcaatt
     6181 agcaatggaa cttatctcca aactagaacc attagcagag aagcaagaag catatagagc
     6241 aagattagaa aacttaaaat tgcctataga ttatacggac acggaagaaa aaattacttt
     6301 tcttcgtcaa ggtttgctct attatcgaaa ccacctaact gaaaatgcaa agctcgctga
     6361 aaaattagaa caagtaacga tgcaattaga cttagttaaa caagatttat tacttgtaaa
     6421 gaaagaaaag gcagacttgc tagaacgtgc gaatgtgagt aacgaagaag actttcgtat
     6481 ggctgcaatg cgcgtaaaag aagaacagaa gtggcgtgaa cgattagttt taatagaagc
     6541 gcaacttgaa ccagaaaagc gagaagctct aaatagatat gaaaatcaag caactatcaa
     6601 agaaaaagag ctccaattag aagaatcact gcggcaaata gaattagaac aagagcaact
     6661 tcacgcctca ctcgcagcac aaaaccatgc aatagacaaa ttggaagaag gcgggacttt
     6721 cgctgtattg atgcaagaat tttattcaga aaaaagcaaa ttacaacaaa tctcagctga
     6781 gtggacagaa acaaaactag cgcttcaaat gttgcaaaac acgatgcagc agttacaaga
     6841 aggaaaactt ccaaaaacat taaaactggc aagtgaatat tttaatcact taactagtgg
     6901 gaactatagg aaagtatact tacaagataa taggcttcaa gtagaaagta aggatagaat
     6961 tccgttcttc ccggaagaac ttagccaagc gactaaagag cagctatatt tggctattcg
     7021 ttttgcgcta attgatgtta ttcacaaaga ctttccacta ccaatcatta ttgatgatgg
     7081 atttgtgcat tttgattcct cgagaatggg gcaaatgatg cagctgcttc aaaaacgaaa
     7141 aagtgaaaac caagtcattt ttttcacatg ccatcaagaa actcgcaaat atttttccag
     7201 tgaggacata cgcgtgctat aatgggtgaa gaaacttctt actacagaaa gaaagaaggc
     7261 gatataatgg aaaaaagatt attagacttt gaagttgggg aaacagtaga cttattcttg
     7321 ctaattaaat caagcgtaaa aggaacggct agcaacggaa agcccttctt gagccttgtc
     7381 ttgcaagata aatcaggtga attagaggca aaactatggg atgttaaaga aagtgatgaa
     7441 gcgaattacg gggtacaaca aatagttcat cttatgggtg atattcaaaa ttatcgtggg
     7501 cgaaaacaat tgaaaatccg ccaaattaga caagctacag cactggacgg tgttagtgct
     7561 agtgaattca tggaaaccgc gccaattaat aaagaagaaa tggctgatga aatcacacaa
     7621 tatattttcg aaatgaaaaa tgcgaatttg caacgaatta cgcgcgcatt gcttaaaaaa
     7681 tatcaagatg atttttatga ttatccggcg gcaatgcgtc atcatcatga atttgtttcc
     7741 ggcttgagtt ttcatgtagt ttcgatgtta cgacttgcaa aatcagttgc cgatctttac
     7801 ccatctgtta accgagattt attatacgca ggtgtgattt tacatgattt aggaaaagtc
     7861 attgagcttt caggccctgt atcaacgacg tatacactag aaggtaattt aattggccat
     7921 atttctatcg tagtagaaga agtgagcaaa attgcggacg aactttcgat tgatggtgaa
     7981 gaagtcgtag ttttaaaaca cgttcttcta tctcatcatg gtaaaggtga gtgggggagt
     8041 ccaaaaccac cgcttgttcg agaagccgag attttacacc aaattgattt aatggatgct
     8101 tccttgaaca tgatggataa agtactaaaa catacaaaac ctggtgaatt cagtgaacga
     8161 gtatttgggt tagataatcg ttcgttttac aatcctatat ttgaataaaa aaacacgctt
     8221 ggaaatttcc aagcgtgttt tttagtgctt atttagatga gtcgctatca ctggatgaag
     8281 agccatcaaa atctttaaaa gcatctttca agtctttatc ttccactttt acgttagcat
     8341 ctttgtattc ttttttaagc gttttttgca tgttctcagt agttagttga gactcaaggt
     8401 aagaagcttt tacagctttt ttatcttttt cgaaagttgt ttttgttgca ggtttgtcca
     8461 tttggatgat gtggtatccg tattgtgttt ttactggagc gctgatgtcg cctttgtttt
     8521 taagggcata agctgctttt tcaaatgcag gatccatctt accaggaccg aatggagcta
     8581 attgtccacc attgtcttta gtagcagtgt ctgtagagta ttcttttgct aaatcagcaa
     8641 attttgcgcc gtctttcagt ttttgttcaa cttctttggc tttgttttca tcagctacaa
     8701 gaatatggct tacagtaata tctggttgcc atgtttcata gtatttttta agtgttttgt
     8761 cgctagtatc agtattggct tcagtagctt tttgaactaa caagttgtac ttaagttggc
     8821 ttttgaatga tttctccgtt aagccacttt gagctaaaac tgcagagaat tgatctccgt
     8881 attgtgattt atactcgttg aatttcttat caacatcttc gtcgcttact ttgtatttat
     8941 ctccaagaat tttttcgaaa gtaagttgtt gtacaaactc agaaccatat ttatctttca
     9001 ttgcgtcgta aagctcatct tgcgttacat cgccagagtc tgtcttaacg acatctccac
     9061 cgccaccgca cgctgctaga ctgaacaatg ccatcatcat gacaagtcca agaattaatt
     9121 tcttcttcat taaataaaac acactcctta gttgttggaa taattcccgc ttaacacaat
     9181 aactatcata acataaatta aaggtaaaaa gaaaagatga aagaaattta atgatattct
     9241 tatggtttag tcagaaatta aaacagaaaa tccgcgttct gcactttcga taaagca
//
LOCUS       DASEAA010000105         9085 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.105, whole genome shotgun sequence.
ACCESSION   DASEAA010000105 DASEAA010000000
VERSION     DASEAA010000105.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9085
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.105"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1130
                     /locus_tag="U0342_001988"
     CDS             <1..1130
                     /locus_tag="U0342_001988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423331.1"
                     /translation="STDGEYTEEAKDLIEVLLEETPFGETIENGFSKLEQEFYSYKKE
                     INRYLAEEDSAAACDILRKVIDEKPNFWPAYNQLASLYFEQLKEEEGVRVLSDLLSRN
                     PGNLLGICDLFIYHFYKGNRKEADELYLELRDVLPVLAHHKEKLGLIHAMMGEYEEAD
                     DLLEQVADLEVTERSKYYYFRAKSSYYLGDVEGAKMFWHSFLECDLYEDVRFPWEQEA
                     DLTNDTRLVLEMLQEEDDLTHMLGVYALTISGNRPELVLFHPLLDMSDWSYMEHLMFT
                     NFDYFPDGAIEQNGYLIAKAMIILKENGVLLNEENMALYKQMFSLVLIDAGKDLILGR
                     YTIETVASAIAKLFLPHLKLELVEEFECSKCARDIERVLSR"
     gene            1209..2168
                     /gene="trxB"
                     /locus_tag="U0342_001989"
     CDS             1209..2168
                     /gene="trxB"
                     /locus_tag="U0342_001989"
                     /EC_number="1.8.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466001.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin-disulfide reductase"
                     /protein_id="HEM2423332.1"
                     /translation="MASEEKIYDVIIIGAGPAGMTAALYTSRADLDTLMIERGVPGGQ
                     MVNTAEVENYPGFDSILGPDLSDKMLSGAKQFGAEYAYGDIKEVVDGKEFKTVTAGSK
                     TYKARAIIIATGAEHRKLGAAGEEELSGRGVSYCAVCDGAFFKNRELIVVGGGDSAVE
                     EGTYLTRYADKVTIVHRRDKLRAQQILQDRAFKDEKVDFIWNSTVEEIVGDGKKVTGA
                     KLVSTVDGSESIMPVDGVFIYVGLVPLTKAFLNLGITDDEGYIVTDEEMRTNLPGIFA
                     AGDVRAKSLRQIVTATGDGGLAGQNAQKYVEELKESLEAEAAK"
     gene            2288..3271
                     /gene="galE"
                     /locus_tag="U0342_001990"
     CDS             2288..3271
                     /gene="galE"
                     /locus_tag="U0342_001990"
                     /EC_number="5.1.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-glucose 4-epimerase GalE"
                     /protein_id="HEM2423333.1"
                     /translation="MSIVVLGGAGYIGSHAVDELITRGYEVVVIDNLRTGHKESIHTK
                     AKFYEGDIRDKAFLSSVFEKEKVDGVIHFAASSLVGESMEVPLVYLNNNVYGTQIVLE
                     VMEQFGVKHIVFSSSAATYGEPERVPITEDMPTNPESTYGETKLIMEKMMKWCDKAYD
                     MKYVALRYFNVAGAKADGSIGEDHKPESHLVPIILQVALGQREKLAIYGDDYNTPDGT
                     CIRDYVQVEDLIDAHIKALEYLKNGGESNIFNLGSSNGFSVKEMLEAARTVTGKEIPA
                     EVVPRRAGDPGTLIASSDKAREILGWEPTYTDVKDIIATAWKWHVSHPNGY"
     gene            3288..4349
                     /locus_tag="U0342_001991"
     CDS             3288..4349
                     /locus_tag="U0342_001991"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465999.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="galactose mutarotase"
                     /protein_id="HEM2423334.1"
                     /translation="MIFIEVMKERFGEFEGETVWKWTMVNDHGMRMSVLNYGAIVTSL
                     ETKDKFGDFANISLGFTNLDDYLAHSPYFGATLGPVAGRITNGQFSLDGKQFQLIQNE
                     GANHRHGGKFNFSKKLWDVSVEKSLDQIVMTFEYCWADGENGYPGNIDAKMTYTLNNK
                     NEWLLDYEAKSDQPTIYNPSNHIYFNLSGEAGSTVLQHQLWVNSDSFLPIDEEFLPIG
                     EKRLAENTIFDLRAGREVAEITQSQDQQVKLVGAGLDHAFILKHENSRPDAVLFDPKS
                     GRRLEMETKADSVLIYTANSLDGSFEIGERTVPKYAGITMETQGLVDAINHDGFGDIV
                     LRPEKPFTSRTAFRFTVES"
     gene            4391..6121
                     /locus_tag="U0342_001992"
     CDS             4391..6121
                     /locus_tag="U0342_001992"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465998.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phospho-sugar mutase"
                     /protein_id="HEM2423335.1"
                     /translation="MNWQEEYQKWVANDKLDSTLRKQLTNMEANEKELEDSFYRNMEF
                     GTAGMRGVLGAGTNRMNIYTIRKASLGLAQFVAENGDEAKKRGIVIAYDPRHMSREFA
                     FESAAVLGHHGVKSYVFDALRPTPELSFAVRHLNAFGGIVITASHNPPEYNGYKIYGE
                     DGGQMPPTGASAVIEYINAVEDIFSVEVANQELLIENGLLEVISEKVDRPYLEKLKEV
                     IVNKELVQERGEDLKIVFTPLHGTGGILGVPALESVGFTNIVKVDEQFVNDPDFGTVK
                     SPNPENREAFLLAIEYGKKFGGDILVGTDPDADRLGVAVRNLDGEYEVLSGNQIGAII
                     LHYLLKQKKAQNELPANAAVLKSIVTSNLGTEIAKHYGAEMIEVLTGFKFIAEQIKHF
                     EETGKHTFEFGYEESNGYMVKPFTRDKDAIQAVLAIAEVALVSKVEGGSLLEDLEQIY
                     AEFGYYKEDLVSLTLSGKDGSRRIKEITSNFREQLPTSMGGFPVERAEDYLRSETTWI
                     ATGKTEAIHLPTADVIKCYFEDGSWFCLRPSGTEPKIKFYFSIRGESKEESATKLEKV
                     KADLMQHIEA"
     gene            6229..7104
                     /gene="rapZ"
                     /locus_tag="U0342_001993"
     CDS             6229..7104
                     /gene="rapZ"
                     /locus_tag="U0342_001993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNase adapter RapZ"
                     /protein_id="HEM2423336.1"
                     /translation="MASKQLKLVIITGMSGAGKTVAMQSLEDLGYFCVDNLPPSLLPK
                     FWELMKESDKMDKIALVMDLRGREFFDSIEPALDELDNTNFITTKILFLEADDKVLVS
                     RYKETRRHHPLEPNGSVLDGINAERELLSDLKGRSQLVINTSNMAPRELRERINNEFQ
                     TEDKDIFNVQLMSFGFKYGIPIDADLVFDVRFLPNPHYIDKMRPLTGLDEDVYEYVMK
                     WPETQTFLDKLVDLLMFTLPFYKREGKTQLVIAIGCTGGQHRSVALTEFVGKAIQQKY
                     ETTISHRDMKRRKGR"
     gene            7106..8074
                     /locus_tag="U0342_001994"
     CDS             7106..8074
                     /locus_tag="U0342_001994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465996.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YvcK family protein"
                     /protein_id="HEM2423337.1"
                     /translation="MKKEMKPKVVVIGGGTGLPVILKGLKKKDIHLTAIVTVADDGGS
                     SGKIREQMDVLPPGDIRNVMLALSNVDPRVVDLFQYRFAVDGDLSGHVIGNLILTALS
                     QLNDSYVDAINVLATVLKIRGKVIPATDQPLILNAEMEDGSIVHGESLIPLQGKHINR
                     VYIEPENVKPYPTAVEAVKEADLIVIGPGSLYTSILPNLLLTELADEIIASKAPKVYI
                     TNILTQIGETDFFSDADHIKVIHEHVGKSFIDKTLINTTTVPKELLFPEDVAQVEHNA
                     KGMEELGVEAIYQDFLSTEDGLVRHAAEKVADAVLAMLPNQTIEKE"
     gene            8082..9053
                     /gene="whiA"
                     /locus_tag="U0342_001995"
     CDS             8082..9053
                     /gene="whiA"
                     /locus_tag="U0342_001995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-binding protein WhiA"
                     /protein_id="HEM2423338.1"
                     /translation="MSFASETKKELTHMDVSDSDAKVELAAFIRMNGAISFSNQLVIM
                     DVQTENAAIARRMYQLLKDLYEVPIELLVRRKMKLKKNNVYIVRLKSGTRGILEDLRI
                     LEPPMTFTKSIDRGFVKKRSAKRAYLRGAFLASGSVNNPETSSYHLEIFSVYEEHNEA
                     ICALMNQFDLNARTLERKNGFITYLKEAEKITEFLSIIGATSALLHFEDVRIMRDMRN
                     SVNRLVNCETANLNKTINAAVRQIDNIKYIQSTVGLEALPERLREIAALRIANEDVTL
                     KELGEMLTTGQVSKSGINHRLRKLDQIAERLRSGETPAQVGLKISNS"
BASE COUNT         2894 a         1400 c         2175 g         2616 t
ORIGIN      
        1 gttcaactga tggtgaatat accgaggaag ctaaagattt aattgaagtt ttattagaag
       61 aaacgccttt tggtgagaca attgaaaatg gcttttctaa attagaacaa gaattctatt
      121 cttataaaaa agaaattaat cgttatttag cagaagaaga tagtgcagct gcttgcgata
      181 ttttaagaaa agtcattgat gaaaaaccga atttttggcc tgcttataat caactcgctt
      241 cgctttattt tgagcaattg aaagaagaag agggcgtcag agttttaagt gatttattat
      301 cgagaaatcc gggtaatctc ttgggtattt gtgatttatt tatttatcac ttttataagg
      361 ggaaccgtaa agaggcggat gagctttatc tggaacttcg ggatgtccta ccggttctag
      421 cgcatcataa agagaagctt ggtctgattc atgcgatgat gggtgaatac gaggaagcgg
      481 atgatttgct tgaacaagtg gctgacttgg aagtgactga gcgtagtaag tattattatt
      541 tccgtgcgaa atcttcctat tatttagggg atgtggaagg ggcaaaaatg ttttggcatt
      601 cctttttaga gtgtgatttg tatgaagatg ttcggtttcc gtgggagcaa gaggcggatt
      661 taacgaatga cacgcgactg gtgcttgaga tgcttcaaga ggaagatgat ttgactcata
      721 tgctaggtgt ttatgcatta actatttctg gaaatcgtcc ggagttagta ttattccacc
      781 cgttacttga tatgagcgat tggtcttaca tggagcattt aatgtttact aattttgatt
      841 attttccgga tggggctatt gaacaaaatg gttatctgat tgcaaaagcg atgattattt
      901 taaaagaaaa tggtgttttg ttaaatgaag aaaatatggc gttatataag cagatgtttt
      961 cgttagtttt aatagatgct gggaaagatt taatacttgg tcgttatacg atagaaactg
     1021 tggctagtgc gattgctaag ctgtttttac ctcatttgaa gcttgaatta gtagaagaat
     1081 ttgaatgtag taaatgtgcg cgagatattg agcgagttct gagcagataa atagaccttt
     1141 ttgctattcc gtattaggat taatttaggc taactattgt atacacataa acgaggaggg
     1201 caaaaagaat ggctagtgaa gaaaaaattt atgatgtgat tattattgga gcgggaccag
     1261 ctggaatgac agctgcttta tatacttccc gtgcagattt agatacgtta atgattgaac
     1321 gcggagtacc cggcggacaa atggttaaca cagctgaggt tgaaaattac cctggatttg
     1381 atagtatttt aggaccagat ttatccgata agatgcttag cggtgcgaaa caatttggcg
     1441 ctgagtatgc ttatggggac attaaagaag tcgttgatgg caaagaattt aaaactgtaa
     1501 cggctggatc gaaaacctat aaagctcggg cgattattat tgcgactggt gctgaacacc
     1561 ggaaacttgg tgcagctggc gaagaagagc ttagtggacg cggcgtttct tattgtgctg
     1621 tttgtgatgg agctttcttc aaaaatcgcg aattaatcgt ggttggcggc ggagactctg
     1681 cagtggaaga aggaacttat ttgactcgtt atgcagataa agtaacgata gtacaccgtc
     1741 gtgataaatt gcgcgcacaa caaattttac aagatcgtgc tttcaaagat gaaaaagttg
     1801 atttcatttg gaatagtaca gtagaagaaa ttgttggcga tggcaaaaaa gtaactggag
     1861 caaaacttgt ttccacagtg gatggttccg aatctattat gccagtggat ggtgttttca
     1921 tctatgttgg acttgttcca cttacgaaag cattcttaaa tttaggtatt acagatgatg
     1981 aaggatacat cgtaacggac gaggaaatgc gtacaaacct tcctggtatt tttgcagctg
     2041 gtgatgttcg tgcgaaaagc ttacgccaaa ttgtaacagc aacaggcgat ggcggacttg
     2101 ctggacaaaa cgctcaaaaa tatgtagaag aattaaaaga gtcgctagaa gcagaggcag
     2161 ctaaataaca gtaaagaaaa ctcgaatggg tctgagatta tttatcttag acccattttt
     2221 gcgtgactat atagacttga gtagtgtaaa atggaagaca aagactattg ttaggagaga
     2281 gataataatg agtattgttg tacttggtgg cgctggctat atcggttcac atgcagtaga
     2341 tgagttaatt actcgcggat atgaagtagt agttattgat aatttaagaa cagggcacaa
     2401 ggaatccatt catacaaagg caaaatttta tgaaggagat attcgagata aggcattttt
     2461 aagttcagtt tttgaaaaag aaaaggtaga tggtgtgatt cactttgctg ctagttcact
     2521 tgtaggagaa tcgatggaag taccgcttgt ttatttaaat aataatgttt atggtacgca
     2581 aattgtctta gaagtgatgg agcaatttgg tgtgaagcat attgtctttt cttctagcgc
     2641 tgcaacatat ggtgagccag aacgagtacc gattacggaa gatatgccaa caaatccgga
     2701 aagtacttac ggcgaaacga agctaatcat ggaaaaaatg atgaaatggt gcgataaagc
     2761 gtatgatatg aaatatgttg cactccggta ttttaatgtt gctggcgcca aagcggatgg
     2821 ttcaattggg gaagatcaca aaccagaatc acacttagtc ccaattattt tacaagttgc
     2881 gcttggtcaa cgagaaaaat tagcgattta cggtgacgac tacaatacgc ctgatggtac
     2941 ttgtattcgt gattatgtac aagtagaaga tttaattgac gcgcatatta aagcgctaga
     3001 atacttgaaa aatggcgggg aaagtaatat tttcaacctt ggtagcagta acggtttttc
     3061 agtgaaagaa atgcttgaag cagctcgtac tgtaacaggt aaagaaattc cagctgaagt
     3121 tgtaccacgc cgtgcaggag atccaggaac gttaattgct tcaagtgata aagcgcgtga
     3181 aattcttggt tgggagccaa cttatacaga cgtaaaagat attatcgcca ctgcttggaa
     3241 atggcacgta tctcatccaa atggctatta ataacttatg aaggaatgtg atttttatcg
     3301 aagtaatgaa ggagcgattt ggggagtttg agggagaaac tgtttggaag tggacgatgg
     3361 taaatgatca tggtatgcgc atgagtgttt taaattacgg agcgattgtt acttcccttg
     3421 aaacaaaaga taaatttggt gattttgcga atattagtct tggttttaca aatttagatg
     3481 attatttggc acactcccca tacttcggcg cgacacttgg ccctgttgct ggacgcatta
     3541 caaatgggca atttagtttg gacggtaaac aatttcaact gattcaaaat gaaggagcta
     3601 accatcgtca cggtgggaaa ttcaatttta gtaagaagct ttgggatgtt tcagtagaaa
     3661 aaagtcttga tcaaattgtg atgacttttg aatactgctg ggcggatgga gaaaatggct
     3721 atccaggaaa tattgatgca aaaatgacat atacgttaaa taataaaaat gaatggctgc
     3781 ttgattatga agcgaaaagc gatcagccga ctatatataa cccgagcaat catatttatt
     3841 ttaatctaag cggagaagct ggttcaacgg ttttacaaca tcagctttgg gttaatagtg
     3901 acagcttcct accaattgat gaagagtttc tcccaattgg ggaaaagcgg ttagcggaaa
     3961 atactatctt tgatttgcgt gcaggtcgtg aagtagcgga gattacacaa agtcaggacc
     4021 agcaagtaaa attagttggt gcggggctgg atcatgcatt cattttaaaa catgaaaata
     4081 gtcgtccaga tgcagttttg tttgatccaa agtcaggacg gcgcttggaa atggaaacca
     4141 aagctgactc ggtattaatt tatacggcga atagtttgga tggctctttt gagattggcg
     4201 agcgaactgt gccaaaatat gctggcataa caatggaaac acagggttta gtagatgcga
     4261 ttaaccatga cggatttggt gatattgtac ttcgaccaga aaaacctttt acatctagaa
     4321 cagcttttcg tttcacagtg gagagctgat aaattttaat taaagagttc taaatgaagg
     4381 agtgtagaga atgaattggc aagaagaata tcaaaaatgg gttgctaatg acaaattaga
     4441 tagcacatta agaaaacaat taacgaatat ggaagcaaat gaaaaagaac ttgaggatag
     4501 tttttatcgt aatatggaat ttggaacggc tgggatgcgt ggtgtactag gcgctggaac
     4561 aaaccgcatg aatatctata ctattcgtaa ggcttctcta ggtttggcgc aatttgtggc
     4621 ggagaacggt gacgaggcta agaagcgcgg aatagtaatt gcgtatgacc ctcgtcatat
     4681 gtcacgcgaa tttgcttttg aatcggcggc ggtattaggg catcatggtg tgaaaagcta
     4741 tgtttttgat gcgcttcgac caacaccgga actttccttt gcagtacgtc atttaaatgc
     4801 gtttggtggg attgttatta cagctagcca taacccacca gaatacaatg gctacaagat
     4861 ttatggtgaa gatggcggac aaatgcctcc aacaggggca agtgctgtaa ttgaatacat
     4921 aaacgcggta gaggatattt tttctgtaga agtagcgaac caagagctat taattgaaaa
     4981 tggtttactt gaggtaatca gtgaaaaagt agaccgtcca tatttggaaa aattaaaaga
     5041 ggttattgtc aataaagagc ttgttcaaga acgaggggag gatttgaaaa ttgttttcac
     5101 gccccttcat ggtactggcg gaattcttgg cgttcctgcg cttgaaagtg ttggctttac
     5161 gaatattgtt aaggttgacg agcaatttgt gaatgatccc gattttggaa cggtaaaatc
     5221 gcctaacccg gaaaaccgcg aagccttttt acttgcgatt gaatatggta agaagtttgg
     5281 tggcgacatt ttagtcggaa cagatccgga tgctgaccgt ttaggcgtgg cagttcgtaa
     5341 tcttgacggc gaatatgaag tgttatctgg aaaccagatt ggcgcgatta ttttacatta
     5401 tttattaaaa caaaagaaag cgcaaaatga attgccagct aatgcagcgg tattaaaatc
     5461 tattgtaaca agtaatcttg gaacagaaat cgcgaaacat tacggtgcgg aaatgattga
     5521 agtattaact ggtttcaaat ttattgcaga acaaattaag cactttgaag aaactggcaa
     5581 gcatacgttt gaatttggtt atgaagaaag taatggttat atggttaagc cgtttacgcg
     5641 tgataaagat gcgattcaag cggtgcttgc gattgcggaa gtggcgctcg ttagcaaagt
     5701 agaaggtgga agtttactag aagatttaga gcaaatttat gctgagtttg gctattacaa
     5761 agaagatcta gtttccttaa ctttaagcgg taaggatggt tctcggcgca tcaaagaaat
     5821 tacaagtaat tttcgcgagc aactaccaac aagtatgggt ggattccccg tggaacgtgc
     5881 ggaagattat ttaagaagcg aaacaacttg gattgctacc ggaaaaacgg aagcgattca
     5941 tttgccaaca gcagatgtca ttaaatgtta ttttgaagat ggttcatggt tctgtttacg
     6001 tccatccggc acagaaccga aaatcaaatt ctactttagt attcgtggtg aaagtaaaga
     6061 agaaagtgca acaaaattag aaaaagtgaa agctgatttg atgcaacata tcgaagctta
     6121 aaaagaaaaa tcccggaaac tcgctttaga gacttttccg ggattttcta gtgagaagtg
     6181 tgctaaaatg gaagatagat attatttgtg cgaaaggatg aggcagatat ggcttctaaa
     6241 caattaaaat tagtaatcat tactgggatg tctggagcag gaaaaacagt cgcaatgcag
     6301 tctttagaag atctcggtta tttttgtgta gataatttac cgccaagttt acttccaaag
     6361 ttctgggagc taatgaaaga aagcgataaa atggataaaa tcgcgctcgt aatggatctt
     6421 cgcggccgtg agtttttcga ttccattgaa ccagcgctag atgagctaga taataccaat
     6481 tttataacaa cgaaaatcct ctttttagag gctgatgata aggtacttgt ttcgcgttat
     6541 aaagaaacgc gccgccacca tccactggag cctaatgggt ctgtgctaga cgggattaat
     6601 gcagagcgcg aactgcttag tgatttaaaa ggccgttcgc agttagttat taatacatcg
     6661 aatatggcgc cacgtgagtt acgcgagcga attaacaatg aattccaaac cgaagataaa
     6721 gatatattca atgtgcaatt gatgtcattt ggtttcaaat acggcattcc gattgatgct
     6781 gatttagtgt ttgatgtgcg ctttttaccg aatccgcatt acattgacaa aatgcgtccg
     6841 ttgacaggac ttgatgaaga tgtgtatgaa tatgtgatga aatggccaga aacgcagacc
     6901 tttttagata agttagtaga tctattaatg tttacacttc ctttttacaa acgagaagga
     6961 aaaacacaat tagttattgc cattggatgt actggaggac agcatcgttc agtagctttg
     7021 acagagttcg ttggtaaggc aattcaacaa aaatatgaaa caacgatttc acaccgagat
     7081 atgaaacgta gaaagggccg ttaatatgaa aaaggaaatg aaacctaaag tagtagtaat
     7141 cggtggcggg accggtcttc cagtcatttt aaaagggctt aaaaagaagg atattcattt
     7201 aacggccatt gtgaccgtag cggacgatgg tggtagttct ggtaaaattc gcgagcaaat
     7261 ggatgtgctt cccccaggtg atatacgcaa tgtcatgcta gctttatcca atgttgatcc
     7321 acgggttgtc gatttatttc aatatcgttt tgcggtagat ggtgatttat cggggcatgt
     7381 tattggaaat ttgattttaa cggctttatc gcaattgaat gatagttatg ttgatgcgat
     7441 taatgtgcta gcaacggtgc tgaaaatccg cggcaaagtt attccagcaa cggatcaacc
     7501 actcatctta aatgccgaaa tggaagatgg ttctattgtg cacggtgaat cgcttatccc
     7561 gttacaagga aagcatatta atcgtgtgta tatcgaacca gaaaatgtaa aaccatatcc
     7621 gacagcagtc gaagcagtga aagaggctga tttgattgtt attggtccag gaagtttata
     7681 cacaagtatt ttaccaaatc tattacttac ggaattagcc gatgaaatta tagcaagtaa
     7741 ggctccgaaa gtatacatta cgaacatttt aacgcaaatt ggcgaaaccg actttttctc
     7801 agatgcggat catattaaag ttatccatga gcatgtggga aaatctttta tagataaaac
     7861 gttaattaat acgacgactg ttccgaaaga acttttattc ccagaggatg ttgcgcaagt
     7921 agagcataat gccaaaggaa tggaagagct tggcgtagaa gccatttatc aagattttct
     7981 ttctacagag gatggccttg tgcgccatgc tgctgaaaag gtggcggacg cggttttagc
     8041 gatgttacct aaccaaacta ttgaaaagga gtgagtaagc catgtcattt gcatcggaaa
     8101 ccaagaaaga attaacccat atggacgtaa gtgatagcga tgcaaaagtg gaactcgcag
     8161 cttttattcg aatgaatggt gccatctcgt tttcgaatca attagtgata atggatgtcc
     8221 aaaccgagaa tgcagccata gctagacgaa tgtatcaatt actgaaagac ttatacgaag
     8281 tgccaataga acttcttgta cgtcgcaaaa tgaagttgaa aaaaaataat gtttatatag
     8341 ttcgcttgaa gtcaggtaca cgggggattt tggaagattt acggatacta gagccaccga
     8401 tgacgtttac gaaatcgatt gataggggat ttgttaagaa gaggagcgcc aaacgtgctt
     8461 atttacgtgg agcctttttg gcaagtgggt cagttaataa tccggaaact tcttcttatc
     8521 atttagaaat tttctctgtt tatgaggagc acaatgaggc gatttgcgct ttgatgaatc
     8581 aattcgatct caatgcgcga acgcttgaac ggaaaaatgg ttttattacc tatttgaaag
     8641 aagcggaaaa aatcacggaa ttcttgagta ttatcggagc aactagcgcg cttcttcatt
     8701 ttgaggatgt tcggattatg cgtgatatgc ggaattcggt gaacaggcta gtgaactgtg
     8761 aaacggcgaa tctcaacaag acaattaatg cggctgttag gcaaatcgat aatatcaagt
     8821 atatccaatc aaccgttggg ctagaagctt taccagaacg actgcgtgag attgcagcgc
     8881 ttcgtatagc taatgaagat gttaccttaa aagagctagg cgaaatgctg acaacaggtc
     8941 aagtaagtaa atcaggtatt aatcatcgtc tccggaaact agatcagatt gcagagcgcc
     9001 ttagaagtgg ggaaacacca gcacaagtag gactgaaaat cagtaatagt taattaaaaa
     9061 gaaaaggatg cgaattagaa tgtcc
//
LOCUS       DASEAA010000106         9085 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.106, whole genome shotgun sequence.
ACCESSION   DASEAA010000106 DASEAA010000000
VERSION     DASEAA010000106.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9085)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9085)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9085
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.106"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..644
                     /locus_tag="U0342_001996"
     CDS             <1..644
                     /locus_tag="U0342_001996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2423339.1"
                     /translation="YNLELGVNQICTLPSFENLTNLRILNLSSNQLKDISALKDTPQL
                     TNLSISANNISDISVLSECDNLRVFYAESNQLTSIEPLRNKTKLEYFDANFNQIKDVT
                     PLSTIPTIRSIKIEENQISDFSSLAGHRLELFDATGQNIYLPDVALGDSTNIVMKDNL
                     GVTLHDWVWYTPGTYQNDTLTWENAGDNSAYFLNNQYPTYPSVTVTVYQTVTP"
     gene            complement(673..2559)
                     /locus_tag="U0342_001997"
     CDS             complement(673..2559)
                     /locus_tag="U0342_001997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463800.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEM2423340.1"
                     /translation="MKRIVKIFLHYLLGILGIILISCVPAIFSKVTSWSSSTYWEALK
                     SIFTAIFHPTKWEISYQGSAEVFHVSLADFITGPYFYSMKIIVASLLISAIIAYLLVI
                     ATFRGPKWLRRGLSGFLSILQAFPDFSFIFLIQMAVVYIYQQTGVFTLNFYSLNGEQI
                     YAAPIVCLSIIPTVLFYKMMMLLMENEWQADYIQLARGKGLTDRAILLRHATPNMMQS
                     LFYQSKTIVWFILSAYLVVEFLFGIEGVLYYLLAGFSPLNIFLVLALVFTPFYFFYAL
                     IDLWISRGKNTESANVTRIPLHWNSFQKTFTEKVNLKSKWRNFVVTTGQLLKRPSFSI
                     PLATLSILLIASLIYGLMGDKINSLKFISDATGRVTDMAPFKPNAQVWLGTDQAGNSI
                     LDQLLVGIKYTLLIAVIIATLRVVIGYILAVPLAFFSKPRTRNFVQSIADGMHYLPLS
                     LLVFIIMVNEFISYSGVFETSLFTRITFQILIMVVIVLPITTNRISSEISQVLKKEFV
                     LSALVFGGNARWILTKHINPQIWSKLILIWIEQLIQTLQMFVHLAIFGIFIGGAIMGA
                     DDGMLNPVIPELSGLIANAKFVFANHQFWIILPPLVVFMVLILCFQIMANSLLKREEE
                     SKKA"
     gene            complement(2643..3278)
                     /locus_tag="U0342_001998"
     CDS             complement(2643..3278)
                     /locus_tag="U0342_001998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2423341.1"
                     /translation="MAEGLRTIYFVRHGKTEWNMTGQMQGWGDSPLVAEGIDGAKAVG
                     EVLKDTPIDAVYTSTSKRTQDTAAYILGDREIEIQPLEELKEMGFGTWEGIRVTEIDE
                     QHPEERAKILHSPETYKAEVNGGETYYELAERLLEGVEKIIAENLSGNILVVSHGMSL
                     TLLLYLLQGGTVEDHRKEAPRILNTSISIVEYQNGEFSLKKINEIGHLDLK"
     gene            complement(3350..4309)
                     /locus_tag="U0342_001999"
     CDS             complement(3350..4309)
                     /locus_tag="U0342_001999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463798.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ring-cleaving dioxygenase"
                     /protein_id="HEM2423342.1"
                     /translation="MKLTGIHHVSIFTANARANFDFYTKIMGLRLVKKSVNQDDPYTY
                     HLYYGDEIGSPGTALTFFEVPNMAKNHPSRNAISSLSLRVPSDEALHYWDKRLDEHRI
                     FHSKPIDQFGRKIIRLKDTDGLPVNLISDETSTQVTEVSPWEDSPVPAEYAIRGLGPV
                     RFSVFKKEKTDRLLTKILGFERIGAYEDDDKLVTVFKTGDVGLGGEVHVESRPDLEQG
                     NLGAGGIHHVAFRVPTDGDLIGWTEMIQDLGYKNSGYVDRFYFHSLYFRESNGILIEL
                     ATDEPGFQTDFTKEHGTYVDLPPHLENRREDILAHLKPLDTDK"
     gene            complement(4316..4732)
                     /locus_tag="U0342_002000"
     CDS             complement(4316..4732)
                     /locus_tag="U0342_002000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2423343.1"
                     /translation="MVKKEERLGVLLWFRFSRFYNRNMKLTNQNLRAVGISTAQFDCI
                     AQIGLDKEITQQQLAEKLVVTKGNVTQLLAKLEQLGYITRTKTGREKHITLTEKGQAC
                     YRENVPKQEAFQQAQFDKLTRDEQKELLKLLKKLGE"
     gene            complement(4879..6018)
                     /locus_tag="U0342_002001"
     CDS             complement(4879..6018)
                     /locus_tag="U0342_002001"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ArgE/DapE family deacylase"
                     /protein_id="HEM2423344.1"
                     /translation="MERQRKIQILKDIVNIDSTNGHEEQVANYLQKLLAEHGIESEKV
                     QYDVDRASLVSEIGSSDEKVLAFSGHMDVVDAGDVSKWKFPPFEAAEHEGKIYGRGAT
                     DMKSGLAAMIIAMIELHEEKQKLNGKIRLLATVGEEVGELGAEQLTQKGYADDLDGLI
                     IGEPSGHRIVYAHKGSINYTVKSTGKNAHSSMPEFGVNAIDNLLLFYNEVEKFVKSID
                     ATNEILGDFIHNVTVIDGGNQVNSIPEKAQLKGNIRSIPEMDNETVKQVLVKIINKLN
                     KQENMNLELIFDYDKQPVFSDKNSDLVHIAKSVASDIVKEEIPLLGISGTTDAAEFTK
                     AKKEFPVIIFGPGNETPHQVNENVSIENYLEMVDVYKRIATEFLS"
     gene            complement(6152..7651)
                     /locus_tag="U0342_002002"
     CDS             complement(6152..7651)
                     /locus_tag="U0342_002002"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2423345.1"
                     /translation="MKRNKVILRIVVTLAAVLAITFWVGMSSKEVEAAVIEQPTPINE
                     IFTDPVVADNVKTLLEKADVTDEVTQTDLDSITQLSAKSAGITTIEGMQYLTNLSELE
                     LTDNQITDVSPLANLTKITELGLSGNPLKDVSALAGLKSLTTMHLIYTDITDVTPLEG
                     LTNLQELNLDINQITDISPLAALTNLQTLSLGYTQVSDLTPIANLSKLTILNAENSKV
                     SDISPLASLSSLTEVYLRENQISDVSPLANIPNLSIIELTDQIITNQPVYYQNKIIVP
                     NVIKGLSGELIAPDTISDNGAYTSPDLTWDLNSYINSVSYTFNQSIAFKNTTVPFSGT
                     VTQPLTEAYTAVFDVDGEQTSLTVVVNELIEEPTVPTKEGYTFDGWYDAETNGNKWDF
                     AVDKMPASDITLYAKFTENEEPNASSSINVEPNDDNSINVEPDASNSITVKPTENNDG
                     TNNPNSSGDDKINIKLPITGDEWNVLPIFVGAVLIGMGLVLFRKKRQTK"
     gene            complement(7859..>9085)
                     /locus_tag="U0342_002003"
     CDS             complement(7859..>9085)
                     /locus_tag="U0342_002003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2423346.1"
                     /translation="NLINLETIELSNNQITDISPVSGLKNLIGLGIDYNDISDLSPIA
                     GLAKLSHLTADNNQISDLSPISSLGAMEIMRLDGNQISDVTPIANLANLNYVFLAENQ
                     ISDISSLQPLFNSPNFFGITLDDQKITSEPVLYQQELVVPNNIKDEMGALISPDTISD
                     NGVYASPNISWNLANYTNQVSYTFNKQLAQGSFSGTVIQPLHNAYTATFDVDGVKTNE
                     VVEETKLLQEPTAPTKEGYTFTGWYDAKTGGNKWDFATDKMPAEDITLYAQFTINSYT
                     ATFDIDGKLTTQKVTYQSLLEEPAAPTKDGYTFKGWYDAKTGGTKWDFATGKMPAGNI
                     TLYAQFTKNATPDSNDPTTVTPTGNGNGTSNPSNSGGNTTLPTAGDENTMLPIFVGVF
                     LLGTAMLILRKTIKVK"
BASE COUNT         2525 a         1822 c         1675 g         3063 t
ORIGIN      
        1 tatataactt agaattaggc gttaaccaaa tctgtacttt accatccttc gaaaatttaa
       61 ctaatttaag gatattaaat ctaagtagca atcaactaaa agatatttcg gccctaaaag
      121 atactcctca attaactaat ttatctattt cagcaaataa tatatcagac atcagtgtcc
      181 tttcagaatg cgataatctc cgagtttttt atgccgaaag caatcaactg acttctattg
      241 agccattaag aaataaaaca aaactagaat acttcgatgc taattttaat caaattaaag
      301 atgttacacc tctcagtacc attccaacaa ttaggtcaat aaaaattgaa gaaaatcaga
      361 ttagtgattt cagctcattg gcaggtcacc gcttagaatt gtttgatgct actggacaaa
      421 atatatacct tccagatgtt gcgctcggcg attccactaa tattgtaatg aaagataatc
      481 tcggagtaac attacatgat tgggtttggt acaccccagg aacttaccaa aatgatacac
      541 ttacttggga aaatgcaggc gataattccg cttacttttt aaataatcaa tatccaactt
      601 acccttctgt cacagtgact gtctatcaaa cagtcactcc ttaaataata atagcctagt
      661 tcttttatag aactaggctt ttttactttc ttcttctcgt ttcaaaagcg aatttgccat
      721 aatttggaaa caaagaatta aaaccataaa taccactaat ggaggtaaaa ttatccagaa
      781 ttggtggttg gcgaacacga atttagcgtt tgctattaaa ccagataatt cagggataac
      841 tgggtttagc atgccgtcat cggcgcccat gattgcccct ccgatgaaaa ttccaaagat
      901 agctaaatgg acgaacatct gtagcgtttg aatgagctgc tcaatccaaa tcaaaattaa
      961 tttggaccag atttgtggat tgatatgctt ggttaatatc cagcgagcat ttccgccaaa
     1021 aacgagcgca ctcaagacga actctttttt taacacctgg gaaatttcac tgctgattcg
     1081 gttggttgta attggtaaaa cgatgacaac catgattaaa atttggaagg ttatgcgtgt
     1141 aaataggctt gtttcgaaaa cgccagaata gctgatgaat tcgttgacca tgataataaa
     1201 gacgagtaat gacagtggta gataatgcat tccgtccgct atcgattgaa caaaattgcg
     1261 ggttcgtggc ttgctgaaaa atgcgagcgg tactgccaaa atgtaaccaa tcacgacacg
     1321 tagcgttgcg atgatgacag ctataagtag cgtatacttg atgccgacga gtaattggtc
     1381 gagaatggag ttgccggctt ggtcggtgcc tagccatact tgcgcatttg gtttgaaggg
     1441 cgccatatcg gtcactcgtc cggtcgcatc actgataaat ttaagcgagt tgattttgtc
     1501 tcccataagc ccgtaaataa ggctcgcgat tagtaagatg ctaagtgttg ccagcggaat
     1561 gctgaaggat gggcgtttta ggagctgccc ggtcgttact acaaagttgc gccatttgct
     1621 tttaaggttt actttttccg taaaggtttt ctggaaacta ttccagtgca gcggtattcg
     1681 ggtcacgttt gcgctctcgg tatttttccc acggctaatc cataggtcta ttagtgcgta
     1741 aaagaagtaa aatggggtga acacgagtgc taatactagg aaaatattta atgggctaaa
     1801 tcctgctagt aaatagtaga gcacgccttc gataccgaat aaaaattcta caacgaggta
     1861 ggcgcttaaa ataaaccaaa cgatggtttt ggattggtaa aataggcttt gcatcatatt
     1921 gggtgtggca tggcgaagta gtatcgctct atcggttaag cctttcccgc gagccagttg
     1981 gatgtagtca gcttgccatt cattttccat aaggagcatc atcattttgt aaaagagcac
     2041 ggttggtatg atggataagc agacgattgg tgctgcataa atttgctcgc cgtttaagct
     2101 gtaaaaattc aaggtgaaca cgcctgtttg ctgatatatg tagacgacgg ccatttgaat
     2161 aaggaaaata aaggaaaaat ctggaaaagc ttgaagtatc gataggaatc cgcttaagcc
     2221 tcggcgcaac cattttggcc cgcgaaatgt tgcaatcact agtaaataag caataatcgc
     2281 tgaaattagc aagctcgcta cgataatttt catggagtag aaatatggtc cggtaataaa
     2341 atctgccaac gagacatgaa aaacttctgc gcttccttgg taactaattt cccatttggt
     2401 tgggtggaaa atcgctgtga aaattgactt aagagcctcc cagtacgtgc ttgatgacca
     2461 tgaagtcact ttgctaaata tcgcgggaac acaactgatt aaaataattc ctaaaattcc
     2521 taataaataa tgtagaaaaa ttttgacaat tcttttcata tgtatgtttt ctcccttttt
     2581 ctagctttct cttatgtata aatctaggac acacctccaa tgagatatgt ccaagattct
     2641 acttatttta agtctaaatg accgatttca ttgatttttt taagagaaaa ttcgccgttt
     2701 tggtattcta cgatgctaat acttgtgttc aagattcttg gcgcttcttt gcggtgatct
     2761 tcaaccgttc cgccttgcag caagtataat aataacgtga gcgacatgcc gtgagaaacg
     2821 acgagaatgt tgccgcttag attttctgca atgatttttt cgacgccttc taacagtcgt
     2881 tctgcaagtt cataataagt ctcgccgccg ttcacttctg ctttgtaggt ttctgggcta
     2941 tggagaattt ttgcgcgttc ttcagggtgt tgttcgtcaa tttcagttac tctaatgcct
     3001 tcccacgttc caaatcccat ttcttttagt tcttccagag gttgaatttc gatttcgcgg
     3061 tcgccaagaa tgtaagccgc ggtatcttgc gtgcgtttac ttgtacttgt ataaaccgca
     3121 tcaattggtg tatctttcaa cacttcgcca actgcttttg ccccgtcaat accttctgca
     3181 actagcggcg aatcgcccca tccctgcatt tgtccagtca tattccattc cgtcttacca
     3241 tgtcttacaa aataaattgt acgtaaacct tctgccaaaa ttctgcctcc taattacaca
     3301 ttcttctaaa attgtatcat gaataggcat attttcaagg ttttcttatt tatttatctg
     3361 tatcaagtgg ttttaaatga gccaaaatat cttcgcggcg attttctaaa tgtggtggta
     3421 aatcaacgta agttccatgt tctttcgtga aatcggtttg gaaacctggt tcatcggttg
     3481 caagttcgat taaaatgcca ttgctttcgc ggaaataaag agagtggaaa taaaaacggt
     3541 ccacatatcc tgaatttttg tagccaaggt cttgaatcat ttctgtccag ccaatcaagt
     3601 cgccatctgt cggtacacga aacgccacgt gatgaatccc gccagcacct aaatttcctt
     3661 gttctaaatc aggtcgcgac tccacatgca cttctccgcc aagcccaacg tcgccagttt
     3721 tgaatactgt aactaattta tcgtcatctt cataggcacc gatccgctcg aagcctaata
     3781 tttttgtcaa aagacgatct gttttttctt ttttgaaaac agagaagcgc actgggccaa
     3841 gtccgcgaat ggcatattct gctggaaccg ggctatcttc ccaagggctc acctcggtta
     3901 cttgtgtgct tgtttcatcg gaaatcaaat tgaccggtaa gccatctgtg tcttttaaac
     3961 gaataatttt gcgcccgaat tggtcgattg gtttactgtg aaaaatgcga tgctcatcga
     4021 gtcttttatc ccagtagtgc aaggcttcat cgcttggaac acgtaagctg aggctagaaa
     4081 tcgcattgcg tgatgggtgg tttttggcca tatttggaac ttcaaagaaa gttagcgctg
     4141 tccccggcga accgatttcg tctccgtaat ataagtggta cgtataaggg tcatcttggt
     4201 taaccgattt tttcactagt cgtagtccca ttatttttgt ataaaagtca aagttagctc
     4261 gtgcgttcgc tgtaaaaata gatacgtgat gaattcccgt taatttcata aataatcact
     4321 ctcctaattt ttttaatagc ttaagtagtt ctttttgttc gtctcttgtt aatttatcaa
     4381 attgagcttg ctgaaaagct tcttgttttg gcacgttttc gcggtaacac gcttggcctt
     4441 tttctgtgag ggtaatatgt ttttcgcgcc ctgtctttgt tcgcgtgata taacctaatt
     4501 gttctaattt cgcgaggagt tgggtaacat ttcccttcgt tacaactaat ttttcggcaa
     4561 gttgttgctg tgtaatctct ttgtctaagc caatttgggc aatgcaatca aactgcgctg
     4621 tcgaaattcc taccgctcgc aaattctgat tggtcagctt catattccga ttgtaaaatc
     4681 gactaaatcg aaaccaaagc aaaaccccta gcctttcttc tttttttacc atgctcgtcc
     4741 cctcctcttg atattattag tttagtacta aactgtatta aaagcaagaa aaaagcctag
     4801 cacctgttta caaacaaata ctagactttt atttaattgc gtattttata gcggaaaata
     4861 agtaaagtta aagttccatc acgataaaaa ctcggtggca attcgtttgt aaacatctac
     4921 catctccaaa taattctcta tagaaacatt ttcgtttact tggtgagggg tttcgtttcc
     4981 tggtccaaaa ataatcactg ggaactcttt cttagctttg gtaaattctg ctgcatcggt
     5041 tgttccggaa ataccgagta atgggatttc ttctttgaca atgtcgcttg ctacgctctt
     5101 agcaatgtgg actaaatccg aatttttatc actaaatact ggttgtttgt cataatcaaa
     5161 tattaattct agattcatat tttcctgttt gtttaactta ttgataatct tcactagcac
     5221 ttgtttcact gtttcattat ccatttctgg aatcgagcga atattccctt ttagttgcgc
     5281 tttttcaggg atactattga cttgatttcc accatcaatt acggtgacat tatgaataaa
     5341 atcgcctaat atttcgttag tagcatcaat tgatttcacg aatttttcta cttcattata
     5401 aaatagcaac aagttgtcaa tcgcattaac accgaattcc ggcatcgaac tatgcgcatt
     5461 tttaccagtg gatttaacgg tataattaat ggaaccttta tgcgcataaa caatccggtg
     5521 tccactcggt tcgccgataa tcaagccatc taaatcatct gcgtaacctt tttgcgttag
     5581 ttgttcggct ccaagttcac cgacttcttc accaaccgtt gctaataatc taattttgcc
     5641 atttagtttt tgtttttctt catgaagctc aatcattgca ataatcatcg ccgctagacc
     5701 tgacttcata tccgtcgcgc cacgtccgta tattttccct tcatgctctg ctgcttcaaa
     5761 aggtgggaac ttccacttcg agacatcacc cgcatcaacg acatccatat gccctgaaaa
     5821 cgccaaaact ttctcgtcac tggaaccaat ttcgctaact aggctggctc tgtctacgtc
     5881 gtattgtacc ttttcggatt caataccgtg ttcagctaac aacttttgca aatagttcgc
     5941 aacttgttct tcatgcccat tagtcgaatc aatattcaca atgtctttta agatttgaat
     6001 ttttctttgt cgttccatgt ttacgccctc tttctttgaa ttccactcta tgttttcccg
     6061 ttccataaaa agacaaactc atcctcctaa tctctaatca aaaaatggct tagctactgt
     6121 atgatttaca gaagccaagc cagtaatcaa attattttgt ttgacgtttt ttgcggaata
     6181 aaactaagcc cattccgata agaactgctc ctacaaaaat gggaagcaca ttccattcgt
     6241 ccccagtaat tggtaacttg atgttaattt tatcatcacc tgaactgttc ggattatttg
     6301 ttccatcgtt attttctgtt ggttttacag tgatggaatt gctagcgtcg ggttctacat
     6361 tgatggaatt atcatcgttt ggttccacat taattgaact actagcattt ggttcttcgt
     6421 tctcagtgaa cttagcatat aaagttatat cactagcagg cattttatct accgcaaagt
     6481 cccatttatt cccattcgtt tctgcgtcat accagccatc gaatgtatat ccttccttgg
     6541 ttggaactgt tggttcttca attaattcat tcacaactac tgtcaaactt gtttgctctc
     6601 cgtccacatc aaaaacggca gtgtaagcct ctgttaatgg ttgggtgact gttccactga
     6661 aaggaaccgt tgtatttttg aaagcaattg attgattaaa tgtgtaacta acactattaa
     6721 tgtagctgtt taaatcccac gttaaatcag gactagtata tgctccattg tcgctaatag
     6781 tatcaggtgc aataagctca ccggaaaggc cttttatcac atttggaaca atgattttat
     6841 tttgataata tacgggttga ttggtaatta tttgatccgt caactcaata atagataagt
     6901 tgggaatatt cgcaagggga ctcacatcgc taatttgatt ctctctcaag taaacttctg
     6961 taagactaga taaactagca agtggcgaga tatcgcttac tttactattt tcagcgttta
     7021 atatggttag tttagataaa ttagcaattg gggttaaatc actaacttgg gtatatccga
     7081 gtgataatgt ttgcaagtta gttaaagctg ctagtggact tatatccgtt atttgattga
     7141 tatccaaatt taattcctgc aaattggtaa gaccttcaag gggagtcaca tcggtaatat
     7201 ctgtataaat aagatgcatc gttgttagac tttttaatcc cgcaagcgca ctcacatctt
     7261 ttaatggatt tccggataat ccaagctctg ttattttcgt taaatttgcg agcggactta
     7321 catcggttat ttggttatct gttagttcta gttctgataa attagttaag tactgcattc
     7381 cttctatcgt tgttattccc gcagatttag ctgataattg ggttatacta tctaaatcag
     7441 tttgcgtaac ttcatctgtt acatccgctt tttcgagaag tgttttcaca ttatcagcaa
     7501 ccactggatc agtaaaaatt tcattaatag gggttggttg ttcaattacc gctgcttcta
     7561 cttcttttga gctcatccca acccaaaaag taattgccaa tactgcagct aaagtcacta
     7621 cgattcttaa tattactttg tttcttttca ttaaactatc tcctttgtat gatcgttctg
     7681 cttttagaaa tttgtgtgtt ctcgtagttg agttactata ttatagcgta gtaggttttc
     7741 gttcaatcac taaaattaga cttgttatcg ttttaattgt gacgtttaga tgaatttctt
     7801 tgctaataaa aaaacagccg aaatctatag aaaaactata gatctcagct gttttttgtt
     7861 attttacttt gattgttttg cggagaataa gcattgctgt tcctaacaag aaaactccta
     7921 caaaaatggg aagcatggta ttttcgtccc cagctgtcgg aagtgtcgta tttccacctg
     7981 aattgcttgg gttacttgta ccattgccat ttcctgttgg agtaaccgtt gttgggtcat
     8041 tggaatctgg ggtggcattt ttagtaaact gggcgtatag cgttatattt cccgccggca
     8101 tttttcctgt cgcaaaatcc catttagttc cacctgtttt agcatcatac caacctttga
     8161 acgtatagcc atccttcgtt ggcgctgctg gttcttctag caagctttga taagtgactt
     8221 tttgcgtcgt taacttccca tcgatgtcga atgtggctgt atagctatta atcgtgaact
     8281 gcgcgtataa agtgatgtcc tctgctggca ttttgtctgt cgcaaaatcc catttattcc
     8341 cgccagtttt cgcatcatac cagcctgtga aagtgtatcc ttctttggtt ggggctgttg
     8401 gttcttgaag caatttcgtt tcttccacta cttcatttgt tttcactcca tctacgtcaa
     8461 atgtcgctgt ataagcattg tgaagtggtt gaatcactgt tccgctaaaa gaaccctgtg
     8521 ctaattgttt attaaatgtg taacttactt ggttagtata attagccaag ttccaactaa
     8581 tattcgggct tgcataaaca ccattatcgc taattgtatc tggtgagatt aacgctccca
     8641 tttcatcctt aatgttatta gggaccacaa gctcttgttg atacaatact ggttcactcg
     8701 ttattttttg atcatctaaa gtaataccaa aaaaattggg tgaattaaaa agtggttgta
     8761 aagaactaat atcactgatt tgattttcag ctaaaaatac atagtttaaa ttagccaaat
     8821 tcgcaattgg ggttacatca ctaatctgat ttccatctag tcgcataatt tccatagccc
     8881 ctaagcttga aataggactc aaatcactta tttggttatt gtctgcagtt aaatgactta
     8941 actttgctaa gccagcaatt gggcttaaat cactgatatc attataatct attccaagac
     9001 caattaagtt tttcaaacct gaaactgggc ttatatccgt tatttgattg ttgcttagtt
     9061 ctatggtttc taaattgatt aaatt
//
LOCUS       DASEAA010000107         9018 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.107, whole genome shotgun sequence.
ACCESSION   DASEAA010000107 DASEAA010000000
VERSION     DASEAA010000107.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9018)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9018)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9018
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.107"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            32..727
                     /locus_tag="U0342_002004"
     CDS             32..727
                     /locus_tag="U0342_002004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423347.1"
                     /translation="MNTLEKRQHEILTNPLHFCKKSGDFAKHSMSIKLSKNELFDVDF
                     VTGIYFVEKGIVMKGTQIDDYIGYDQLLKPGDVCNFSSFMSSDLKRNIGAQLLSPSSS
                     VITAVDRDFFIFMVEKHVSVEEFMLYQAKKEIMILQRRCLLNTLKVKDRVKHLIAAIG
                     YEYGISNGDNIQIPQELSTTFLSKFMGITREYLSLTLSELKKEDYLLNTKIPVVINVE
                     KLFNEIPYESLIL"
     gene            797..1675
                     /locus_tag="U0342_002005"
     CDS             797..1675
                     /locus_tag="U0342_002005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2423348.1"
                     /translation="MSEYLEIPELNKAFPFRSFINEGEVLVYPHWHKEIEIIYALKGS
                     LNLGVNDMPIQLKEGEIQVINGGDVHYFLASPSSERIVIQFDLSLFQEEMQMDGQMQT
                     LREMLTEMAHLSREWPEETVAKMQSLIMNIHSESSGEKPGKHYILKADLLAIIGLIYR
                     EIPQIKTQPDSVISEDAVLKSQETLHKLDQIFSYVEKHYQEPVSLQEVADYTGFSTYY
                     FTKFFKRNTGMTFVTFLNDYRLNKAKWMLLNEAFPVTEVAELAGFSSVKTFHHAFKRA
                     MGVAPLKYRKTIYGNN"
     gene            1750..2826
                     /locus_tag="U0342_002006"
     CDS             1750..2826
                     /locus_tag="U0342_002006"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465687.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2423349.1"
                     /translation="MTLKVGIIGCGGIANGKHMPSLLKAEKAEMVAFCDIVLEKAEAA
                     AKEFGSENASVYTSYIELLQDKSIDVIHVCTPNISHAEISIAAMEAGKHVMCEKPMAK
                     TTEEAKSMIEAANRTGKKLTIGYQNRFRKDSDYLHQVCENGELGDIYYAKAKAIRRRA
                     VPTWGVFLDEEAQGGGPLIDIGTHALDLTLWMMDNYKPKYVVGNSYHKLAKKENAANA
                     WGSWDPNKFTVEDSAFGFITMENGATIVLEASWALNTLDVGEARTSLSGTEGGADMED
                     GLRINGEAHSQMYEKKIQLEAGGVDFYDGTGDDPALIEAEQWLEAIEKNTDPVVKPEQ
                     ALVVTQILEAIYESSKTGQPVYFN"
     gene            2842..3582
                     /locus_tag="U0342_002007"
     CDS             2842..3582
                     /locus_tag="U0342_002007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2423350.1"
                     /translation="MKAKIALQLWSVKEACEDDFFGTLEKVAEMGYDGVEFAGYYGKS
                     ASEIKAKLAELGLEVAGSHISKEQLEADLENVILFERELGNEYIICPYADFKTKQEWL
                     EFGGRLREITTTIQQAGMHFGYHNHAHELDKLDDEIILDSLLKNVPEMVAELDTYWIE
                     YAGIGVIPFIEKYRNRVPLIHIKDKSRANKESTIIGEGVLDVPGFVKTALQSGTTWLI
                     IEQEAFTQDPLTSVAKGYTYLANVLEEN"
     gene            3584..4306
                     /locus_tag="U0342_002008"
     CDS             3584..4306
                     /locus_tag="U0342_002008"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose utilization protein ThuA"
                     /protein_id="HEM2423351.1"
                     /translation="MTRVTVWNEFLHEKEDDAVLAIYPNGIHGQIASFLEKAGIEAGT
                     ATLEEPEHGLTEEVLANTDVLIWWGHMGHDRVEDRIVDRVQKRVLEGMGLVVLHSGHM
                     SKIFMRLMGTSCDLKWREANERERLWVVDPTHPIAKGIGEFIELDEEEMYGEHFDIPT
                     PDELIFLGWFEGGEVFRSGITYKRGNGRIFYFQPGHESYPTYHHPDIQQVIINGVHWC
                     AEGRKNYPAYGNHQPLEKIGRK"
     gene            4309..5277
                     /locus_tag="U0342_002009"
     CDS             4309..5277
                     /locus_tag="U0342_002009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar phosphate isomerase/epimerase"
                     /protein_id="HEM2423352.1"
                     /translation="MKLGVFTPLFANLSLDEMLDKVKAAGLDAVEIGTGGNPGNHHCP
                     TDELLASEAARKEYLEKFTSRGLTISAFSCHDNPISPNKEEAAASDEILRKSIKLASL
                     MNVPVVNTFSGTAGDSDDAKAPNWPVIPWPTVYSDIKTWQWETKLIPYWKEIGELAAA
                     SGVKIGIELHGGFLCHTPYTILKLREETNDAIGVNLDPSHLWWQGIDPVGAIKILGKA
                     GAIHHFHAKDTYLDQDNINMYGLTDMQPYGDVQTRSWTFRSVGCGHSLTEWSDIMSAL
                     RTYGYDYVVSIEHEDPLMSIDEGFDRAVTNLQSILIKDKPLDMWWA"
     gene            5300..6349
                     /locus_tag="U0342_002010"
     CDS             5300..6349
                     /locus_tag="U0342_002010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465683.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2423353.1"
                     /translation="MKKYQLVIIGYGGMGSYHVTLASAANNLEVHGVFDILAEKREAA
                     AQKGLKIYESFEAVLADEKVDAVLIATPNDSHKELAITALEAGKHVVCEKPVTMTSED
                     LLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMFEQKTIGEMFHLESRVHGANGIPGD
                     WRHLKAHGGGMVLDWGVHLLDQLLFLVDSNVKSVSANLSFALGDEVDDGFVTFITFEN
                     GITAQIEVGTTNFIKLPRWYVKGTEGTGIIHDWDLSGEIVKPTALAKTSEPTPIKAGQ
                     GLTKTMAPPSEEATNTLSLPAPAKLAPSFYNNFVDVLNNTSEPIVQNEEVYQVLKLIE
                     AIFEAAETNRTIHSI"
     gene            6443..6628
                     /locus_tag="U0342_002011"
     CDS             6443..6628
                     /locus_tag="U0342_002011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465682.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CsbD family protein"
                     /protein_id="HEM2423354.1"
                     /translation="MSEDKGMKDKAKGLKDKVVGDAKDKFGKATDDKGKQVEGKAQKA
                     KGEVEDKTGDAKKKLSE"
     gene            6759..8660
                     /locus_tag="U0342_002012"
     CDS             6759..8660
                     /locus_tag="U0342_002012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465681.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2423355.1"
                     /translation="MTKKVLPKEASEFTKKVNEKVKKALPFENTKDFEDAKKGFIGTW
                     DHVKVDTEDGHAVWDLDDYKFIEGEAPDSVNPSLWRIAQLNMTNGLFKVTDRVYQVRG
                     FDMSNTTIMEGDTGLVITDTLMSVETARAALELYFEHRPKKPIKAIIYTHSHADHYGG
                     VAGLISKEDVTSGKVALIGPEGFMEAAVSENIFAGNAMIRRAEFMYGSRLSRGELGQV
                     DAGLGKTASKGHMSLLAPNDTITFDHEKRVVDGIEVEFLMAPNTEAPSEHMMYFPQFK
                     LLNIAEDAVHNLHNILTLRGAQIRDAYEWWKDIDKAIRAFGDKYEVCIGQHHWPTWGN
                     EEINDMLIHQRDAYKYMHDQTLHFINKGLTAIEVAEAVKFPPELEEKWYLRGYYGTLN
                     HDVKAIYQFYLGWYNGNPADLYPLPPEDVAKKYVEFMGGVDEVVKKARVSYEAGEYRW
                     VAEVVKHAVFADGENGEARALLADALEQLGYQSESGPWRNVFLAGADELRNSVPDEVI
                     SGVTLDIVEGMPFNLILDYMGIRLNGERSIGKRISMNWKLTDVDENYHLLVNNSVLIY
                     REGEVDDKADLTLTTTRDTFNHIFGGVKSFEAAFADQTAKLEGDAKKFGEFASLLDEF
                     NPVFNIVTP"
     gene            complement(8714..>9018)
                     /locus_tag="U0342_002013"
     CDS             complement(8714..>9018)
                     /locus_tag="U0342_002013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465680.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HEM2423356.1"
                     /translation="VLLTVCAIWEYAMPTDAAVKSYYVKVEDAGKPVQKNQFKGFKYV
                     SNVYDDKGKQKQLTFYSEKELTKNEQFKVLVGENKMVVNYKKIKNVPDKIKYLAEK"
BASE COUNT         2999 a         1454 c         2006 g         2559 t
ORIGIN      
        1 gtgatattat actttagagg aggaatttgc aatgaacaca ttagaaaaac gacaacatga
       61 aattttgacc aatccacttc atttttgtaa gaagtctgga gattttgcta agcatagtat
      121 gagtattaaa ctttctaaaa atgaactgtt tgatgttgat tttgttacag gtatctactt
      181 tgttgaaaag ggtattgtta tgaaaggaac acaaatagat gactatattg ggtacgatca
      241 attgctaaaa cctggagatg tctgtaattt ttcatctttt atgtcttctg atttaaaacg
      301 caatattggt gctcaattac tctcgccaag ttctagcgtc atcacggcag tagatagaga
      361 ttttttcatt tttatggtag aaaagcatgt tagtgtagaa gaatttatgc tttatcaagc
      421 gaaaaaagaa attatgatac tgcaacgtcg ctgtttgctt aatacgctta aagtgaaaga
      481 tcgcgtaaaa cacttgattg ctgcaattgg ttatgaatat ggtatttcca atggagataa
      541 cattcaaatc ccgcaagaat tatctactac atttttatct aaattcatgg gtattacaag
      601 agagtatctt agcttaactc taagtgaact aaaaaaagaa gattacctat taaatactaa
      661 aatacctgtt gttataaatg tagaaaaact ttttaatgaa attccctatg aatcattaat
      721 tttataaact taagaagata gtttaacggc tgtcttcttt tttatgctaa aatgaaagaa
      781 aaaaaggagt ttcactatga gcgaatactt ggaaattcca gaattaaata aagcttttcc
      841 ttttcgttcg tttattaatg aaggggaagt tcttgtttat ccacactggc acaaagagat
      901 tgaaattatt tatgcgctaa aaggtagcct taatcttggc gttaatgata tgccaattca
      961 attaaaagaa ggagaaattc aagtaataaa tggcggagat gtgcattatt ttttagcttc
     1021 gccgagtagt gagcgcatcg ttatccaatt tgatttaagt ttatttcaag aagaaatgca
     1081 aatggatggc caaatgcaaa cgttgcgcga aatgcttaca gaaatggcac atttgagcag
     1141 ggaatggcca gaagagacgg ttgctaaaat gcaatcttta attatgaata tccattctga
     1201 gtcaagcggg gaaaagcctg ggaagcatta tattctaaaa gcagacctac tagcgattat
     1261 cggcttgata taccgggaaa ttcctcaaat caaaactcaa cccgatagtg tgatttcaga
     1321 agatgcagtc ttaaaatctc aagaaacatt acataaatta gatcaaattt tttcctatgt
     1381 cgagaaacac tatcaagaac cggtcagctt acaagaagta gctgattaca ctggatttag
     1441 cacgtactat ttcacaaaat ttttcaagcg aaatactggt atgacgtttg tgactttttt
     1501 aaatgattac cgcctgaata aagcaaaatg gatgttgtta aatgaagctt tccctgttac
     1561 agaagtggcc gaactagcag gatttagtag tgtaaaaacc tttcatcatg cctttaaacg
     1621 agcaatgggt gtagcaccat taaaatacag aaagacaata tacgggaata attaagcaat
     1681 aaaataggaa gatttacctc tagtagtttt gtatgatgta actatcaaaa ctattggagg
     1741 ttttttatta tgacattaaa agttggaatt ataggttgtg gaggcattgc aaacgggaag
     1801 catatgccaa gtttattaaa agctgagaaa gcagaaatgg ttgctttttg cgatatcgtt
     1861 ttagaaaaag cggaagccgc agcaaaagaa tttggtagtg aaaatgcaag cgtatacaca
     1921 agctatatag aattactcca agataaatcc atcgatgtca tccatgtttg tacaccaaat
     1981 atttctcatg cagaaatttc tattgcggct atggaagctg gaaagcatgt tatgtgcgag
     2041 aaaccaatgg caaaaacaac cgaagaagcg aaaagcatga ttgaagctgc taatcgtaca
     2101 ggaaaaaaac taacaattgg ttaccaaaat agattccgca aagactcgga ttacttgcac
     2161 caagtttgcg agaacggcga actaggcgat atctattatg caaaagcaaa agcgattcgt
     2221 cgccgagctg taccaacttg gggtgtgttt ttagatgaag aagcgcaggg tggcggacca
     2281 cttattgata ttggaacaca tgcgcttgat ttaacgcttt ggatgatgga caattataaa
     2341 ccgaaatatg tagtaggaaa cagttatcat aaacttgcca aaaaagaaaa tgcagcaaat
     2401 gcatggggct catgggatcc aaataaattt actgtagaag attccgcgtt tggttttatc
     2461 acaatggaaa acggcgcgac gatagtatta gaagcaagtt gggcgcttaa cacactcgat
     2521 gtcggtgaag caagaacatc tctatcggga acagaaggcg gcgcagatat ggaagacggt
     2581 ttacgaatta acggcgaagc gcacagccaa atgtatgaaa agaaaattca attagaagca
     2641 ggcggcgttg atttttatga tggaactggt gatgacccag cgttaatcga ggcagaacaa
     2701 tggttagaag caattgaaaa aaatacagat cctgttgtaa aaccagaaca agcacttgtt
     2761 gtaacacaaa tcttagaagc tatttatgaa tcatcgaaaa caggacaacc agtttatttt
     2821 aattaaggag gaagtgcctt tatgaaagca aaaattgcgt tacagttgtg gagtgttaag
     2881 gaagcttgtg aagatgattt ctttggaacg ttagaaaaag tggcggaaat gggttatgac
     2941 ggtgtggagt ttgctggtta ttacggcaaa tccgccagtg aaattaaagc gaaattggct
     3001 gaactcggac tagaagtagc aggatctcat attagtaaag aacagcttga agcagactta
     3061 gaaaatgtca ttttgttcga acgcgaattg ggaaatgaat atattatttg cccatatgca
     3121 gattttaaaa cgaagcaaga atggcttgaa ttcggcggca gacttcgtga aattacaaca
     3181 actattcaac aagctgggat gcattttggt tatcataatc atgctcacga attagataaa
     3241 ttagatgacg aaattatttt ggacagttta cttaaaaatg taccagagat ggttgcagaa
     3301 ttagacactt actggattga gtatgcggga attggggtta ttccttttat cgaaaaatat
     3361 cgtaaccggg taccactaat tcatattaaa gataaatcga gagcaaacaa ggaaagcact
     3421 attatcggtg aaggtgtttt ggatgtgcct ggttttgtta aaacggcgct tcaatctgga
     3481 acaacctggc tgattattga acaagaagca tttacgcaag atccgctaac aagtgtggcc
     3541 aaaggttata cgtatttagc gaatgtattg gaggagaact aatatgacac gtgtaacagt
     3601 atggaatgaa tttttacatg aaaaagaaga tgatgctgtg ttggctattt atccgaacgg
     3661 aattcatggg caaatcgcta gctttctaga aaaagcaggc attgaggcag gcacagctac
     3721 tttagaagaa ccagaacatg gccttactga agaagtatta gcgaatacgg atgtactgat
     3781 ttggtgggga cacatggggc atgaccgcgt agaagataga attgtcgatc gtgtgcaaaa
     3841 acgcgtgtta gaaggcatgg gacttgtcgt actacattct ggtcatatgt cgaaaatctt
     3901 tatgcgccta atgggaacaa gctgtgattt aaaatggcgt gaagcaaatg aaagagagcg
     3961 cctttgggta gttgacccga cgcatccgat tgcaaaaggg attggtgaat ttatcgagtt
     4021 ggacgaggaa gaaatgtacg gcgagcattt tgatatcccg acacctgatg aactaatttt
     4081 cttaggttgg tttgaaggcg gcgaagtttt ccgaagcggg attacctaca aacgaggaaa
     4141 tggtcggatt ttctacttcc aaccaggcca tgaatcctat ccaacctatc accatccgga
     4201 tattcagcaa gtaattatta acggcgtaca ttggtgcgcg gaaggtcgga agaattatcc
     4261 ggcatacgga aatcaccaac cacttgaaaa aatagggagg aaataaacat gaaattaggc
     4321 gtatttacac cattatttgc aaatttatca ttggatgaaa tgttagataa agtaaaggcg
     4381 gcaggacttg atgctgtcga aatcgggacg ggcgggaacc ctggaaatca tcactgtcca
     4441 accgatgaac ttttagcgag tgaagcagcg cggaaggaat atttagaaaa atttactagt
     4501 cgaggattaa caattagtgc ttttagttgc cacgataacc cgatttctcc taataaagag
     4561 gaagcggctg catctgatga aattttgcgc aaatcaatca aactagcctc tttaatgaat
     4621 gttccggttg ttaatacatt ttctggaaca gcgggagata gtgacgatgc caaagcgccg
     4681 aactggccgg ttattccttg gccaactgtt tatagcgata ttaaaacttg gcaatgggaa
     4741 acaaaattaa tcccttactg gaaagaaatt ggcgaacttg cagcagccag tggcgttaaa
     4801 attggtatcg aactgcatgg tggtttctta tgccatacgc catataccat tttaaaactg
     4861 cgggaagaaa caaatgatgc tatcggggtt aatttagacc caagtcattt gtggtggcaa
     4921 ggaattgacc cagttggcgc tatcaaaatc ttaggaaaag ctggagcgat tcatcatttc
     4981 catgctaaag atacgtattt agatcaagat aatattaata tgtacggttt aacggatatg
     5041 caaccatatg gtgatgtaca aacgagaagt tggacattcc gttcggttgg ttgtgggcac
     5101 agtttgacag aatggtcgga cattatgagc gcgcttagaa catatggtta tgattatgta
     5161 gtcagcatcg agcacgaaga tccattaatg tcgattgatg aaggattcga ccgtgctgtt
     5221 acaaacttac aatcgatttt aattaaagat aaaccactgg atatgtggtg ggcttaacga
     5281 taagaaaggg tgtcttagga tgaaaaaata tcaattagta attattggtt acggcgggat
     5341 gggaagctat catgtaacgc ttgcatcggc tgctaataat ttggaagttc acggtgtatt
     5401 cgacattcta gcagaaaaac gtgaagccgc tgcccaaaaa ggtttgaaaa tctatgaaag
     5461 ttttgaagcg gttttagcgg atgaaaaagt agatgcagtt cttatcgcga caccgaatga
     5521 tagccataaa gaactggcga ttactgcact tgaagcaggc aagcatgttg tttgcgagaa
     5581 accagtgaca atgacaagcg aagatttact agcaattatg gatgtggcta aaagagtaaa
     5641 taaacatttt atggtgcatc aaaatagacg ttgggacgaa gatttcctga ttattaaaga
     5701 aatgtttgaa caaaaaacga tcggtgaaat gttccactta gaatcacgtg tccacggagc
     5761 aaatggtatt ccaggagatt ggcgtcattt gaaagcacat ggcggcggga tggtacttga
     5821 ttggggtgtg catctacttg accaattgtt attcctagta gatagtaacg tgaaatctgt
     5881 atctgctaat ctaagttttg cgcttgggga tgaagtcgat gatggcttcg tcacgttcat
     5941 tactttcgaa aatggcatta ccgctcaaat tgaggtaggc acaacgaact tcattaaatt
     6001 acctcgctgg tatgtcaaag gtacagaagg aactggaatt atccacgact gggatttaag
     6061 cggggaaatc gtcaaaccaa ccgcactcgc taaaacgtct gagccaacgc caattaaagc
     6121 agggcaaggg cttacaaaaa caatggcacc accaagcgaa gaagcaacca atacattatc
     6181 gcttccagca cctgccaaat tagctccatc tttttataat aattttgtcg atgttttaaa
     6241 taatacgagt gaaccaatcg ttcaaaatga agaagtttat caagttttaa aattgattga
     6301 agccatattt gaagcggctg agacaaatcg aactatccat tctatttaaa aaagatgttt
     6361 tagcttccta aactgtggaa aacactacta tggagataaa gaattcttca ttagaaaata
     6421 ttctaattag gaggcaatat caatgagcga agataaaggc atgaaagaca aagcaaaagg
     6481 acttaaagac aaagtagtag gtgacgcaaa agacaagttc ggtaaagcaa cagatgataa
     6541 aggcaaacaa gtagaaggta aagctcaaaa agctaaaggc gaagtagaag ataaaactgg
     6601 cgacgctaaa aagaaattat ccgaataagt taaaaagagc ggcttgaatt tttcaagccg
     6661 ctcttttttt ggtccaataa tagcaaaagg ttttgaataa ttttacggag gtataaaaag
     6721 aaagtatgtg aaaataaacg tgcaggagga aaccgataat gacaaaaaaa gtcttaccaa
     6781 aagaagcgtc tgaatttaca aagaaagtga atgagaaagt aaaaaaagct ttaccatttg
     6841 agaacacgaa agattttgaa gatgcaaaga aaggctttat tggcacttgg gatcatgtaa
     6901 aagttgatac ggaagatggc catgcagttt gggatttgga tgattataag tttatcgaag
     6961 gagaagcacc tgattctgtt aacccaagtt tgtggcgtat cgctcaactt aatatgacaa
     7021 atggtttatt caaagtaacg gaccgggttt atcaagtacg cggctttgat atgtcgaata
     7081 cgacgattat ggaaggcgat actggccttg tcattacaga tacattaatg tcggttgaaa
     7141 ctgcccgtgc ggcgcttgaa ttatactttg agcatcgtcc gaaaaaacct attaaggcga
     7201 ttatttatac gcattcccat gccgatcatt acggcggtgt agcgggtcta attagcaaag
     7261 aagatgtaac ctctggaaaa gtggcactta ttggacctga aggctttatg gaagcggcgg
     7321 tcagcgaaaa tatttttgct ggaaatgcaa tgattcgtcg tgcggaattt atgtatggta
     7381 gccgtttgtc acgcggggaa ttaggtcaag tggatgcagg acttggtaaa acagcgtcca
     7441 aaggccacat gtccttactt gctccaaatg atactattac gtttgatcat gaaaaacgcg
     7501 tggttgatgg gattgaagtg gaattcttaa tggcgccgaa tacagaagct ccatcagaac
     7561 atatgatgta tttcccgcaa tttaaactac ttaatattgc agaagatgct gttcataact
     7621 tgcataacat tttaacatta cgtggtgcgc aaattcgtga cgcttacgag tggtggaaag
     7681 atattgacaa agcgattcgt gcgtttggtg ataaatatga agtttgtatc ggtcaacatc
     7741 actggccaac gtggggtaat gaagagatta atgacatgct tattcaccaa cgtgacgctt
     7801 ataaatatat gcatgaccaa acgcttcatt ttattaataa aggattaact gccattgaag
     7861 tggctgaagc tgtgaaattc cctcctgaac tagaagaaaa atggtattta cgaggatact
     7921 acggcacgct taaccatgat gttaaagcga tttatcaatt ttatcttggt tggtataacg
     7981 gaaatcctgc tgacctttat ccgctacctc cagaagatgt ggcgaaaaaa tacgtcgagt
     8041 tcatgggtgg cgttgatgaa gtagtgaaaa aagcgcgtgt atcctatgaa gcgggtgaat
     8101 atcgctgggt tgcggaagtt gtcaaacatg cggttttcgc agacggagaa aacggagaag
     8161 caagagctct tcttgcagat gcgttagaac aacttggcta tcaatctgag tccggaccat
     8221 ggcgtaatgt atttttagcc ggagcagacg aactgagaaa ttctgtccca gatgaagtta
     8281 tttctggtgt tacactggat attgttgaag gtatgccgtt taacttgatt ttagattaca
     8341 tgggtattcg tttaaatggg gaaagatcca tcggtaaacg tatctccatg aactggaaat
     8401 taacagatgt tgatgagaat tatcatttac ttgtaaataa ttccgtactt atttatcgtg
     8461 aaggtgaagt agacgataaa gctgatttaa ctttaactac tactcgtgat acatttaatc
     8521 atattttcgg tggtgtgaaa agctttgaag cagcatttgc tgaccaaaca gctaaattag
     8581 aaggagacgc gaagaaattt ggggagtttg cttccttgtt agatgaattt aatcctgtct
     8641 tcaatattgt tacaccttaa taaaaacaaa aaacgctttg tttagccttt tatcaggcta
     8701 taacaaagcg tttttatttt tcagctaaat atttaatttt atctggtacg tttttgattt
     8761 ttttataatt aacaaccatt ttgttctcgc caacaagtac tttgaattgc tcgttcttag
     8821 ttaattcttt ttctgagtag aaagttagtt gtttttgttt tcctttgtca tcataaacat
     8881 tcgatacata tttgaaccct ttgaattgat ttttttgaac gggttttcct gcgtcttcta
     8941 cttttacgta ataggatttc actgcggcgt cagttggcat cgcatactcc caaatcgcgc
     9001 aaacagttag aagaactg
//
LOCUS       DASEAA010000108         9003 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.108, whole genome shotgun sequence.
ACCESSION   DASEAA010000108 DASEAA010000000
VERSION     DASEAA010000108.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 9003)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 9003)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..9003
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.108"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..757
                     /locus_tag="U0342_002014"
     CDS             <1..757
                     /locus_tag="U0342_002014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM2423357.1"
                     /translation="KESEVLHLTLNNESIKSIIDGFYLLYGDLLTAAVNKYKKLNSRK
                     IIVKLKAMFGQTPEAEEKLRLMLSERMKKFLAEGDSALPVEDGMEIDELAGDSKIAES
                     RDIKKMIDDVFEMVANSFNIPLGLAKGDTVGLSEQVNSFLMFSINPIAEMFTDEGNRK
                     FYGRDSVLERTYMKLDTTRIKVQDIQEIASSMDVLFHIGVNTIDDNLRMIGREPVMSP
                     ETQERFVTKNYAPLGENEEDLKGGDINENKGDS"
     gene            735..1481
                     /locus_tag="U0342_002015"
     CDS             735..1481
                     /locus_tag="U0342_002015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Clp protease ClpP"
                     /protein_id="HEM2423358.1"
                     /translation="MKIKEIPKIESRLEFKNSSENPEIADLYLYGSIGSGWFDDITSS
                     EVQNFLKTSSVSQINVHVNSGGGDVFESIAIHNLLKAHPAKISIYIDALAGSGASVIA
                     MAGDEIIMPSNAMMMIHKAWTIAAGNADEFRKVANDMDKIDHAVTESYTERFVGEREE
                     LVTLLTNEEWLTAEECVTLGFCDSIGEIELNEEEQVTENSNEAVTVASIVDKYKVVAS
                     TENKAIQTKNNIFKSIANRSDAFLLGGNDK"
     gene            1478..2650
                     /locus_tag="U0342_002016"
     CDS             1478..2650
                     /locus_tag="U0342_002016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage major capsid protein"
                     /protein_id="HEM2423359.1"
                     /translation="MNNLDKKDSETLNISTAFLNAIKEGATEAEQVTAFTNMAEQIQN
                     NIIAQARKEVNREMNDNNVLASRGANALTSDESKYYNEVIAGNGFAGVTALLPPTVFE
                     RVFEDLTVEHPLLSKINFVNTTATTEWIISVGDVATAWWGPLCAEIKEVLDNGFDKIQ
                     TGMYKLSAYIPVCNAMLDLGPSWLDQYVRTILGEAMALGLEAGIVNGSGKDQPIGMMR
                     DLNNVTAGEHPVKTATPLTDLTPATLATKVMLPLTDNGKKSVSDAILVINPADYWSKI
                     YAATSYMTPQGVWVTGILPVPLEIVQSVAVPVGKAVAGRAKDYFMGIGSEQVIRTSTE
                     YRLLDDETLYYAKQYANGRPKDNSSFLVFDITGLEGSPAIDVNVVNNATPSETPAE"
     gene            2673..2792
                     /locus_tag="U0342_002017"
     CDS             2673..2792
                     /locus_tag="U0342_002017"
                     /inference="COORDINATES: protein motif:HMM:NF020688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423360.1"
                     /translation="MKVVELKEELDKRGITYNTSDLKSDLILKLEEDDLNAGV"
     gene            2779..3072
                     /locus_tag="U0342_002018"
     CDS             2779..3072
                     /locus_tag="U0342_002018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423361.1"
                     /translation="MQVSDELLQEVKDYLHITWSDETEDKRIRKIIERVSARISQLTG
                     VSFTFEKEDAAKQLLFDGVRYVNNNSYEYFQQNFICEIQSLQFDVAVNINAEG"
     gene            3059..3397
                     /locus_tag="U0342_002019"
     CDS             3059..3397
                     /locus_tag="U0342_002019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage head closure protein"
                     /protein_id="HEM2423362.1"
                     /translation="MQKVNHDTFNDGVLFYGISETLRDSNRKRIGTNFVSKGKLFYEE
                     VSMRDQDVMRINAMGKDLNLKIKTHYRKEATSYQKIQIEGVQYEVSYIDKDRNVRLFW
                     YLTRSGDENE"
     gene            3390..3800
                     /locus_tag="U0342_002020"
     CDS             3390..3800
                     /locus_tag="U0342_002020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423363.1"
                     /translation="MNEATKERITKLNEYLITKLSENTGLNVYQDNVSETELNEEMNG
                     VYDYIIFSTGGFSKSDTSQFTLIQEVTVQVATENTSDLDGLQIDIITSLEGTGGAGPY
                     YFLNSTKGQVQKGQQDGYVDALELIFTRSFKYVC"
     gene            3790..4212
                     /locus_tag="U0342_002021"
     CDS             3790..4212
                     /locus_tag="U0342_002021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423364.1"
                     /translation="MCAKWSLEFSDVERLSNLISQIPNKSEAIINKTLETKAVPLVKL
                     NIEKRINLSKNWKGQLLNKNHAQSSGPFNVKMGNLGFELLTKPKFNYLIFPDQGIGKH
                     NKTKQDFMQLGVEESSQEIVEMLEQAVFKEINDTLGGK"
     gene            4214..4792
                     /locus_tag="U0342_002022"
     CDS             4214..4792
                     /locus_tag="U0342_002022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2423365.1"
                     /translation="MATIVEDFDATRVTNVGTKFTGDTASIAFGCLGSIEGETELLEL
                     VKKCEGVETKKKTTPQKMTLTLTGHVKVDVLRDIFGLSNEGLKVGVYSYGADSLSKPF
                     ILTADVLDEFEAQTKLIAFSNCVAATGLKVTVENGADEVAEIELEFTAMIDDNRKCYY
                     EAIVSELDATGRDAFVKQWHTNFTPEMVVATP"
     gene            4913..5275
                     /locus_tag="U0342_002023"
     CDS             4913..5275
                     /locus_tag="U0342_002023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330192.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423366.1"
                     /translation="MEFTIDFLDGTKAQLDSNVTMLTLYRLQNEGEGAVDGKFLKGFM
                     QKEADLDPISIAQAMYAAYRQATDKKKAKNFEEFMENYQMDLEIDMQIYFAIVTKRAR
                     DEFAKQFKKKTGSSKGKK"
     gene            5458..8538
                     /locus_tag="U0342_002024"
     CDS             5458..8538
                     /locus_tag="U0342_002024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail tape measure protein"
                     /protein_id="HEM2423367.1"
                     /translation="MANNQAKVTFKVFNQDFNRAMAEMNADSKKLRQELKLEQEQLKN
                     TGSETDKLAADLNGLQKQYDVASQKTKETAQQLEKVKTKFGENSTEASRMESALKSAQ
                     ITEQQLANKIELTTDALEKAKSAETGRVASLNKLQSEQSNLEAQSEKLASEYKLESAA
                     MEGTATEAEKLARAEKYLADQTNVAEQKIKNMEQQLELVKQEYGENSTEALKMETSLN
                     EAKMSVSKLGNELTEFKNDSNNAGQGMDELNNKMSGAVMMEAAEHIAAVGEKLKEIGQ
                     YALEAFREVDEGLDTIITKTGATGKAGEDLSNVFDNIAGNSKFEFQQIGDAVGELNTQ
                     FGFTGKELEKNSMKLLKFSDINGSDVTNSTMKAKQALEAYGLENKDLSMVLDSVTYVA
                     QGTGQSVDDIFDKAVKGAPQIEALGLSFADGAQLMGNLDKAGVDSSATLSSLTKASVV
                     YAKENKTLAQGLSELEGKISGAKTETEKINLAAEVFGSKGAPRMVKAIEDGRLSLDGL
                     AGTAEMASGTVSKIFEATLDPIDRQDVALNNVKMAMADLGNSIAEVLAPILDALSSVL
                     QKVSEWFNGLPAPVRQVTVVIGLLLIGFTALLPVITAIVAMIGILGTAMLGVVGIIAA
                     IVAGIAILVVGFKWLWDNCEGFRNFWIGLWEWIVAAFKAAWEYIQPGLQSIGDALKKF
                     WEEYGPTIIGALQAVWDFIVGFVAWLEPLWTFLWEGLKSTLKFAWDAILAIVQFALDY
                     LGGLIDFWAGIFTGDWDRVWKGIQEMTSAALEAIKGIFFALVRWIDNILKSLGIDMGA
                     IWKSITDATKTAWKWISDYIVNPIRDANNRAKLILAAFKAAFKITFDVIRDNIANTWS
                     KVEDKIIKPVKNAYDKVKNIVDDIKDTFKNLKIKFPKIEMPPMPHFSLKGKFSLKEMT
                     VPKLDVSWHKNGGFFNSASVIGIGEAGPEAAVPLVGKRMDPFADAVSNRMLSSLPSMA
                     QGKISENNNDVKVEINMNNNLYGAADEDRLVNKVKREITNSMNSKTTAWGGRTS"
     gene            8535..>9003
                     /locus_tag="U0342_002025"
     CDS             8535..>9003
                     /locus_tag="U0342_002025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2423368.1"
                     /translation="MNYQIFIDDVSCNDYDLCVAERPLLKTPEQDVEIREIRGRNGAF
                     IIPFAYKNVEEEISFNFLDDSKSFKQLFREAKRYFMNGKNLVFSDDPHVYRKIVHVSF
                     SDAENTVLEYGFFNVIFTLDPFQYANTNIIEINKGDLLVNEGTIESQPYMKIYA"
BASE COUNT         3221 a         1247 c         1947 g         2588 t
ORIGIN      
        1 taaagaatca gaagttttac atcttacttt gaataatgaa agtattaaat ccatcatcga
       61 tgggttttat ttgctttatg gggatttatt aactgctgcg gttaataaat ataaaaaatt
      121 aaactctaga aaaataatag taaaactaaa agcgatgttt ggacaaactc cagaggcaga
      181 agaaaaattg agacttatgc tatctgagag aatgaagaag tttttagcag aaggtgactc
      241 tgctttacct gtcgaagatg gaatggaaat agacgaactt gcgggagatt ctaaaatagc
      301 agaatcaaga gatataaaaa aaatgattga tgatgttttt gaaatggttg caaatagttt
      361 taacattcca cttggtttag caaaaggaga cacagtgggc ttaagtgaac aggttaattc
      421 attcttaatg tttagtataa atcctatcgc tgagatgttt accgatgaag gaaacagaaa
      481 gttttatggt agggattcgg ttttagaaag aacctatatg aaattagata ctacaagaat
      541 taaggttcaa gatattcaag aaattgcgag ttcaatggat gtgctgttcc atatcggtgt
      601 aaatacaata gatgataatt taagaatgat tggacgtgaa cctgtgatga gtccagaaac
      661 tcaagagcgt tttgttacaa aaaattatgc acctttaggt gagaatgaag aagatttgaa
      721 agggggtgac ataaatgaaa ataaaggaga ttcctaaaat agaaagtcga ttagagttta
      781 aaaacagctc tgaaaaccca gaaatcgcgg acttgtattt atacggatca ataggtagtg
      841 gctggtttga tgatattacg tctagtgaag tacagaattt tttaaaaaca tctagcgtct
      901 ctcaaataaa tgtacatgtc aatagcggtg gtggagatgt ttttgaatcc attgctattc
      961 ataatctatt aaaagcacac ccagctaaaa tcagtattta tattgatgct cttgctggaa
     1021 gtggtgcatc tgtaattgca atggcaggtg atgaaattat tatgccaagc aatgcaatga
     1081 tgatgattca taaagcctgg acaatagcag ctggtaatgc agatgaattt agaaaagttg
     1141 cgaatgacat ggacaagatt gaccatgcag tgacggaaag ttatacagaa cgctttgttg
     1201 gggagcgtga agagttagta acattactta ctaacgagga atggttaaca gctgaagaat
     1261 gtgtgacact tggtttttgc gattctattg gtgaaattga attaaatgaa gaggaacaag
     1321 ttactgagaa ttcaaatgaa gcagtaacag tagcaagtat agttgataaa tataaagtag
     1381 ttgcatcaac tgaaaacaaa gcaattcaaa caaaaaataa tatttttaaa agtatcgcaa
     1441 atagaagcga tgctttttta ttaggaggaa atgacaaatg aataaccttg ataaaaaaga
     1501 ttcagaaaca ttgaacatca gcacagcatt tttaaacgca attaaagaag gcgcgacaga
     1561 agcggagcaa gtaacagcgt ttacaaacat ggctgaacaa attcaaaaca atattatcgc
     1621 tcaagctcgt aaagaagtaa atagagaaat gaatgataat aatgtactcg ctagccgtgg
     1681 tgccaacgct ttaacaagtg atgaaagcaa atactataat gaagtcattg caggaaacgg
     1741 ttttgctgga gttactgcat tacttccacc taccgttttt gagcgtgtgt ttgaagattt
     1801 aacggtggaa catcctctat taagtaaaat taattttgtt aatactactg caacaacgga
     1861 atggattatt agtgttggtg atgtcgcaac tgcttggtgg ggtcctttat gtgccgagat
     1921 taaagaagtt ttagacaatg gttttgataa aattcaaact ggaatgtata aattatctgc
     1981 ttatattccg gtttgtaatg caatgctcga tttaggaccg tcgtggttag atcaatatgt
     2041 tcgtactatt ttaggtgaag caatggcgct tggtcttgag gctggtattg ttaatggttc
     2101 cgggaaagac caaccaatcg gaatgatgcg cgatttgaat aatgttacgg ctggggaaca
     2161 cccagttaaa accgcaacac ccctgaccga tttgacacca gctacactag caacaaaagt
     2221 aatgttacct ctgacagaca acggaaagaa atctgtcagt gatgcgattc ttgttataaa
     2281 tccagctgat tactggagca aaatctatgc ggcaactagt tacatgacgc cccaaggagt
     2341 ttgggtgaca ggtatcttac cagttccact tgagattgtt caatcggttg cagtgcctgt
     2401 cggtaaagca gtagccggtc gtgctaagga ttactttatg ggaattggtt cagagcaagt
     2461 tattcgcaca tcaactgaat atcgtttatt agacgatgaa acactctact atgctaagca
     2521 atatgcgaat ggtcgaccta aagacaattc ttctttctta gtattcgata ttacaggtct
     2581 agaaggttcg cctgctattg atgtgaatgt agtgaataac gcgacaccct ccgaaacccc
     2641 tgctgaataa agcggggaat aactattcta ctatgaaagt tgtagagtta aaagaagaac
     2701 tagataagcg aggaatcaca tataacactt cggatttaaa atctgactta atattaaagt
     2761 tagaggagga tgatttaaat gcaggtgtct gatgaattat tacaagaagt aaaagactac
     2821 ttgcatatta cttggtctga tgaaacagaa gacaaacgta taagaaaaat cattgaaaga
     2881 gtatcggcac gcattagtca actgactggc gtgtctttta cttttgaaaa agaagatgct
     2941 gcgaaacaat tgcttttcga tggtgtgaga tatgtaaata ataattctta tgaatacttt
     3001 caacaaaact ttatttgtga aattcaaagc ttgcaatttg atgtggcggt gaatattaat
     3061 gcagaaggtt aatcatgaca cttttaacga tggtgtcttg ttttatggaa tatcggagac
     3121 acttcgcgac tctaacagga aacgaatagg aacaaatttt gtcagtaagg gcaagttgtt
     3181 ttatgaagag gtatctatgc gtgatcaaga tgttatgaga atcaatgcaa tgggaaaaga
     3241 tttaaattta aaaattaaaa ctcattatcg aaaagaggca acatcttatc aaaaaatcca
     3301 aattgaaggt gttcaatatg aagtaagtta tatagataaa gacagaaatg tgcgtttatt
     3361 ttggtattta actaggtcag gtgatgaaaa tgaatgaggc gacaaaagag agaattacaa
     3421 aattaaacga gtatttaatc acgaaactta gtgaaaacac aggtttaaat gtttatcaag
     3481 ataacgttag cgaaacagaa ttaaatgagg aaatgaatgg tgtttacgat tatatcattt
     3541 tttccactgg tggattttca aaaagtgaca cctcacaatt cacattgata caagaagtaa
     3601 cagttcaagt agcaacagag aatactagtg atttggatgg attgcaaatt gacataatta
     3661 ctagtttaga aggaaccggt ggagctggtc cttattattt tttgaactct actaaaggtc
     3721 aagttcaaaa ggggcaacaa gatggctatg tagacgcact ggaattaatc tttacaaggt
     3781 catttaaata tgtgtgctaa atggtcttta gagttttcgg atgttgaaag attgtcaaat
     3841 ttgattagtc aaattccaaa caaatctgaa gctattatta ataaaacact tgagacaaaa
     3901 gcagttccac ttgtgaagtt aaacatagaa aaaagaataa atctttctaa aaattggaaa
     3961 ggtcaattgc ttaataaaaa tcatgcgcaa tcgtctggac cttttaatgt gaaaatggga
     4021 aatttggggt ttgaattatt aacaaaacct aaattcaact atttaatttt tccagatcaa
     4081 gggattggaa aacacaataa aacaaaacaa gactttatgc aattaggtgt agaagaatca
     4141 tctcaagaaa tagtagagat gttagaacaa gcagtattta aagaaataaa tgatacctta
     4201 ggaggtaaat aaaatggcaa caattgttga agattttgat gcaacaagag taacaaatgt
     4261 aggtacgaaa ttcactggtg atactgcaag tattgcattt gggtgtctag gttctattga
     4321 aggtgaaaca gagttactcg aattagtaaa aaaatgtgaa ggtgttgaaa cgaagaaaaa
     4381 aacaacgccc caaaaaatga cactgacgtt gacaggtcat gtaaaagtag acgtgttacg
     4441 agatattttt ggtttatcaa atgaaggttt gaaggtagga gtttactcgt atggtgctga
     4501 cagtttaagt aaaccattta ttttaacagc ggatgtgtta gatgaatttg aagcgcaaac
     4561 aaaattaatt gcattctcaa attgtgtggc ggcaacagga ttaaaagtaa cagtagaaaa
     4621 tggtgcagat gaagtagctg aaattgaatt agaattcact gctatgattg atgataatag
     4681 aaaatgttat tatgaagcaa ttgtatcaga gcttgatgct actggtcgcg atgcatttgt
     4741 aaagcaatgg cacacaaatt tcacaccaga aatggttgtt gccacaccct gaaactcccc
     4801 ttgaattgcc tttggaaaat gaatctggca taggggacga ctcagaagaa acaactcaag
     4861 attagacggg gtaaattatc ccgtcttttt tatttgcata ggaggaattt taatggaatt
     4921 tacaatagat tttttagatg gaactaaagc gcaattagac tcaaatgtca caatgttaac
     4981 tttatatcga ttgcaaaacg aaggtgaagg tgctgtcgat gggaaatttt taaaaggttt
     5041 tatgcaaaaa gaagcagatt tagaccctat ttcaattgca caagcaatgt atgcggcgta
     5101 tagacaagct acagacaaaa aaaaagcaaa gaattttgaa gagtttatgg aaaattatca
     5161 aatggatttg gaaattgata tgcaaattta tttcgcaatt gttacgaagc gagctagaga
     5221 tgagtttgca aaacaattca aaaagaaaac aggtagttca aaaggaaaaa aataaaactg
     5281 ccggacatca ttattgaatg tgtagaggat ttgtacactt tatatctcta tgtgtttgaa
     5341 ctaaatcgtg atgatatctg gcaactgccc ttaacatccg ttcagatgat agcagagaaa
     5401 aagactgcaa ttgaaaactg gacaaattat gagaacgaaa aggcaggtgg gaaataaatg
     5461 gcaaacaatc aagcgaaagt tacatttaaa gtttttaatc aggacttcaa tagagccatg
     5521 gcagaaatga acgctgatag taaaaaattg agacaagaat taaaacttga acaagaacag
     5581 ttaaaaaaca ctggatcaga aactgataaa ttagcagctg atttaaatgg tctacaaaag
     5641 caatatgatg tagctagtca aaaaacaaaa gaaacagcgc aacagctaga aaaggtaaaa
     5701 acaaaatttg gagaaaacag cacagaagca agtcggatgg agtcagctct taagagcgcg
     5761 caaataacag aacaacaact tgctaacaaa attgagctta ctactgatgc tttagagaag
     5821 gcaaaatcag cagaaactgg tagagttgct tctttgaata aattgcaatc agaacaatct
     5881 aatttagaag ctcaatcgga aaaattggca agcgagtata aattagagtc ggctgcgatg
     5941 gaaggtactg ctacagaagc tgaaaagctt gctagagctg aaaagtatct tgctgatcaa
     6001 acaaatgtag ctgaacaaaa aattaagaat atggaacaac agctagaatt agttaaacaa
     6061 gaatatggtg aaaatagtac agaagctttg aagatggaaa catcattaaa tgaagcaaag
     6121 atgtctgtgt cgaaactagg caatgagttg actgaattca agaatgactc taacaatgcc
     6181 gggcaaggga tggatgaatt aaataataaa atgtctggtg cggttatgat ggaagcggca
     6241 gagcatatcg cagctgtagg agaaaaactc aaggaaattg gtcaatatgc acttgaagct
     6301 tttcgtgaag tagatgaagg tctggacaca atcattacaa aaacaggtgc gaccggaaaa
     6361 gccggagaag atttatcaaa tgtatttgat aacattgcag gcaattctaa gtttgagttt
     6421 caacaaattg gtgatgctgt gggtgagctc aacactcaat ttggatttac aggtaaggaa
     6481 ttagaaaaaa attctatgaa actgttgaag ttctctgata taaatggttc tgatgttact
     6541 aacagtacta tgaaggcgaa acaggcactt gaagcttatg gattggaaaa taaagattta
     6601 tccatggttc ttgattcggt gacttatgtt gcgcaaggga caggtcaaag tgtcgatgac
     6661 atatttgata aggctgtcaa gggtgcacca cagattgaag cattgggtct atcatttgcg
     6721 gatggtgcac aattaatggg taatttggac aaagctggtg tcgattcaag tgccacatta
     6781 tctagtttga caaaggctag tgttgtgtac gcaaaagaaa ataaaactct tgcgcaaggt
     6841 ttatctgaat tagaaggtaa aatttcggga gctaaaacag agactgaaaa aattaatcta
     6901 gctgcggaag tttttggttc aaagggtgcg ccacgaatgg taaaagctat agaggacggt
     6961 cgtttaagtt tagacggtct tgcaggaacg gcggaaatgg cttcaggaac agtgtctaaa
     7021 atatttgaag caactcttga ccctatagac cgacaagatg tcgctttgaa taatgtgaaa
     7081 atggcaatgg ctgatttggg gaactctatt gcagaggtac ttgcgccaat tctagacgcg
     7141 ctttcatctg tcttacaaaa ggtgtcagag tggttcaatg gactacctgc ccctgtccga
     7201 caagtgacag ttgtaattgg actgttgcta ataggtttta ccgcattgct cccagtcata
     7261 actgcgatag ttgctatgat tggcatttta ggaacagcga tgttaggcgt ggtaggcatt
     7321 atagcagcga tagttgctgg aattgctata ttagtcgttg gattcaaatg gttgtgggat
     7381 aattgcgaag gttttcggaa tttctggata ggattgtggg aatggattgt tgcggctttc
     7441 aaagcagctt gggaatatat tcaaccaggt ttacaatcta ttggagatgc acttaaaaag
     7501 ttctgggaag aatatggtcc gacaattatt ggagcgttgc aagctgtttg ggactttatt
     7561 gtaggctttg ttgcttggtt agaaccattg tggacatttt tatgggaagg tttaaaaagt
     7621 acacttaaat ttgcatggga tgcaatttta gctattgttc aatttgcttt agattatctt
     7681 ggtggtttga ttgacttttg ggcagggatt ttcacaggtg actgggatag agtttggaaa
     7741 ggtattcaag aaatgactag tgctgctttg gaagctatca aaggtatatt ctttgcactg
     7801 gttaggtgga tagataatat tctaaagtct ttaggaatag acatgggtgc tatttggaaa
     7861 agcatcactg atgctacaaa aacagcatgg aagtggatta gtgattacat tgttaatcct
     7921 attagagatg caaacaatag agccaaactt attttagctg cctttaaagc cgcctttaag
     7981 attacttttg atgtaatacg agataatata gcaaacacgt ggtcaaaagt agaggataaa
     8041 attataaaac cagtgaaaaa tgcatatgat aaagttaaaa acattgttga cgatattaaa
     8101 gatacattta aaaatctaaa aataaaattt cctaaaattg aaatgcctcc aatgccacat
     8161 tttagtttga aaggtaaatt tagtttaaaa gagatgacag ttcctaaatt ggatgtaagc
     8221 tggcataaaa atggaggttt ctttaactca gcatctgtca ttgggattgg agaagctggt
     8281 ccggaagccg ctgtgcctct tgttgggaaa aggatggacc cttttgctga cgctgtatca
     8341 aatagaatgc tttcatcgct acctagtatg gcacaaggga aaatatctga aaacaataat
     8401 gatgtcaaag ttgaaattaa tatgaataat aatttatatg gtgctgctga tgaagataga
     8461 ttagtcaata aagtgaaacg cgaaataact aatagtatga attctaaaac aacagcatgg
     8521 ggaggtagaa cttcgtgaat tatcaaatct ttatagatga tgtctcatgt aatgattatg
     8581 atttatgtgt tgcagaaaga cctttgctaa aaacacctga acaagacgtt gaaattagag
     8641 aaattagagg aagaaatggt gcttttatta tcccgtttgc atataaaaat gtagaagaag
     8701 agatttcatt taatttttta gatgattcta agtcatttaa acaacttttt agagaagcaa
     8761 aacggtattt tatgaatggg aaaaaccttg tattctctga tgatccacat gtatatagaa
     8821 aaattgttca cgtatctttt tcggatgcag aaaataccgt tttagaatac ggctttttta
     8881 atgttatttt cactttagac ccttttcaat atgcaaatac aaatattatt gaaattaata
     8941 aaggtgactt actcgtcaat gaaggaacta tagaatcaca gccttatatg aaaatttatg
     9001 cga
//
LOCUS       DASEAA010000109         8936 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.109, whole genome shotgun sequence.
ACCESSION   DASEAA010000109 DASEAA010000000
VERSION     DASEAA010000109.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8936)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8936)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8936
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.109"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(45..2375)
                     /gene="secA2"
                     /locus_tag="U0342_002026"
     CDS             complement(45..2375)
                     /gene="secA2"
                     /locus_tag="U0342_002026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464111.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="accessory Sec system translocase SecA2"
                     /protein_id="HEM2423369.1"
                     /translation="MRQNYDDRKIVKQYREIARQIVKKEGLYKNMDQAELCEQTNFWR
                     EKFKTKPMTDRDKINIFALAREAASRIIGLDAVVVQLIGALVLGDGKVAEMKTGEGKT
                     LMSLFVMFIEVMRGNRVHLVTANEYLARRDREEIGQVLEYLGVSVALNESGLDIAQKK
                     AIYTADVIYGTASEFGFDYLRDNMVRQKEDKVQSGLDFVLIDEADSILIDEARTPLLI
                     SDRKEEDLSLYHTANKLVKKMMKDDYEMEEHKRFVWLNDAGIEKAQKFWGVESLYSAE
                     AQSELRITMLLMRAHFLMHKDKDYVVLDDEVLIIDPHTGRALPGRRFNDGLHQAIEAK
                     EGVEVKEESRTLATITIQNYFRMYKKISGMTGTAKTEEEEFRQIYNMDVVVIPTNLRV
                     NREDMQDDIFYTKKEKGRAIVYEVSWRYEKGQPTLIGTSSIKSNEWISGLLDAAGIPH
                     QVLNAKNHAQEAEIIAKAGKRGMVTLATNMAGRGTDIKLDPDVHKLGGLAVIGTERHE
                     SRRIDLQLMGRSGRRGDPGFSKFMISLEDDLLEQFESKSWEKLSTKLKRKAPRDGKPV
                     NSRKIHAVVVDAQKRLEGANYDIRKDLLSYDEVIDLQRKMVYKERDLLLERNKLGVSS
                     EKILREVAEYSFIHPSDIPEEELEIYYSRQKELLGGTKFPISFDQVTLMDPREVVEEI
                     VSWHKKERNKFPAETIAAIEREVYLNLMDQMWVMHLDAMVQLREGIHLRAYGQQDPLV
                     MYQKEGAQLFEKFQADYHFYFAHALLELDPDGLIQG"
     gene            2800..4209
                     /locus_tag="U0342_002027"
     CDS             2800..4209
                     /locus_tag="U0342_002027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464110.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="invasion associated endopeptidase"
                     /protein_id="HEM2423370.1"
                     /translation="MKKATIAATAGIAVTAFAAPTIASASTVVVEAGDTLWGIAQSKG
                     TTVDAIKKANNLTTDKIVPGQKLQVNEVAAAEKTEKSVSATWLNVRSGAGVDNSIITS
                     IKGGTKVTVESTESNGWNKITYNDGETGFVNGKYLTDKVASTPVAPTQEVKKETTTQQ
                     AAPAAETKTEVKQTTQATTPAPKVAETKETPVVDQNATTHAVKSGDTIWALSVKYGVS
                     VQDIMSWNNLSSSSIYVGQKLAIKQTANTATPKAEVKKEAPAAEKQAAPVVKENTNTN
                     TNTTTEKKETTQQQTAPKAPTEAAKPAPAPSTNTNANKTNTNTNNTNTSTPSKNTNTN
                     TNSNTNANQGSSNNNSNSSASAIIAEAQKHLGKAYSWGGNGPTTFDCSGYTKYVFAKA
                     GISLPRTSGAQYASTTRISESQAKPGDLVFFDYGSGISHVGIYVGNGQMINAQDNGVK
                     YDNIHGSGWGKYLVGFGRV"
     gene            4297..5481
                     /locus_tag="U0342_002028"
     CDS             4297..5481
                     /locus_tag="U0342_002028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464109.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent rRNA methyltransferase"
                     /protein_id="HEM2423371.1"
                     /translation="MKNLVKVKVFPKFTKGYKEGYPLILKERMEKWPKELQEGDVLEL
                     TDTNGQFIARGYHGEQNKGSGWLFTWDKKQQLDEDFLTNLITTAIEKRQFLFADDSTT
                     AFRIFNGEGDGLGGFTVDFYDGYLVIQWYSLGIYAFQKMIIDIFLSFPEIKGIYEKRR
                     FQEDTKDDFVAGQKATFPLIIKENGINYATYLDDGWMTGIFLDQRDVRRRISEDYSVS
                     KNVLNTFSYTGAFSVAALFGGASKTTSVDVAGRSLSKTKEQLEVNGLDPNEQAIIVED
                     VFHYFKYAARKQLTFDLVVVDPPSFARTKKVTFRAAKDYPAMLREIIDITAPNGTIIA
                     STNYAGFGMKAFKKLIAEAFQTSDRTYKIVETHSLPADFTVNKNFPEGNYLKVLFLTL
                     DI"
     gene            complement(5512..6168)
                     /locus_tag="U0342_002029"
     CDS             complement(5512..6168)
                     /locus_tag="U0342_002029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464108.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2423372.1"
                     /translation="MFAYDIYEPIGRKDEDTFPVIFALHGFGGDELEMAGRLELLMDR
                     FVVVSMRGDVEYGPAYGFYHMVTEGDPNPQEVDYISLRVAQFIDKICTDYISIDKEQV
                     FLAGFDQGAVLTISIMQSYGGQYKAAALLSGRLPYYMEERPANLMLKDKRIFIGHGIE
                     DAVIQISEADDIARLFEKMGCHVEKHRYFIGHNVNEAEEDDLYRWFESFLPNQPVKNK
                     "
     gene            complement(6190..6399)
                     /locus_tag="U0342_002030"
     CDS             complement(6190..6399)
                     /locus_tag="U0342_002030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423373.1"
                     /translation="MANIEYEIIEEIGVLSENARGWRKELNKISWNGRPPKYDIRDWS
                     ENHEKMGKGITLTDEEAEVLKKLLD"
     gene            6564..7316
                     /locus_tag="U0342_002031"
     CDS             6564..7316
                     /locus_tag="U0342_002031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464106.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter ThrE family protein"
                     /protein_id="HEM2423374.1"
                     /translation="MSTETTDYLLETCLMAGKIMMESGAEMYRVEDTMNRIATIASNK
                     KGISFVTPTGLFMSLEGERNVQLQQIPTRTINLEKVSMVNEFSRDFAEKRISLKELHT
                     KLVNLDKDVRYFPIWLQIIAASLVSGSLMVIFGGGWFDFIPTCIIGAIGFIIFYYTQI
                     FMKVKFLAEFLASLSVGLLAVLTISIGWGINLDTMIIGGVMPLVPGVPITNAVRDLIA
                     GHLLSGMARGTEALLTSCAIGIGIAVVFRFFL"
     gene            7330..7788
                     /locus_tag="U0342_002032"
     CDS             7330..7788
                     /locus_tag="U0342_002032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine/serine exporter family protein"
                     /protein_id="HEM2423375.1"
                     /translation="MDLVWTIIIQLVLSYVATVTFAIITNVPKRALNACGITGTFGWM
                     AYWTLMQMDSGTGASSLAGAFVVAVLSHFFAKYKKLPITIFNVPGIVPLVPGGLAYQA
                     VRNFVLGDYTEAIGFSVQVTVVAGAIAAGLMLSEVFNHSIRTFRERKERI"
     gene            complement(7843..>8936)
                     /locus_tag="U0342_002033"
     CDS             complement(7843..>8936)
                     /locus_tag="U0342_002033"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464104.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423376.1"
                     /translation="LLTLKKRHAKQLLVFLLVLGGSSLLVGSIVQATENSNLKTQESQ
                     TVVKGTKETKQPESIAGYTYVGYIHTSKNNTAPPVEKGIVTVNYQDEQGNSVAATETL
                     EGDIGKPYQTSMKNIEGYTWKEVKGEATGTFTEKAQVVTYVYQKVSVATVTVRYLDQD
                     GKPIHEPQTISGNVGEPYDASTDKYKLQIDGYVLDTTKLPNNANGTFTNQATQVTYIY
                     TKEAQDVTITIKFVDNNGNPFVLTDLTTYKNGDLVPVYPNLDQYHMRLNYNQQIYSQG
                     EAVSDIVLSAKEGETYSLPERMTFNIIDDKGNEIPYVISQNPDFSSSGIEKWENYRSI
                     PANHEGTLTGENVVVTYQIFVYGVMIPAP"
BASE COUNT         2666 a         1811 c         1617 g         2842 t
ORIGIN      
        1 taaattaccc ataaatttgg aaaaaatcag acgcaagttg tattttagcc ttggattaag
       61 ccgtctggat caagttcaag taaggcgtga gcaaagtaga aatgatagtc tgcttggaat
      121 ttctcaaata attgagcccc ttctttttgg tacataacta atggatcttg ttgtccatat
      181 gctcgcaagt ggataccttc gcgtaattgt accattgcgt ccagatgcat aacccacatt
      241 tggtccatta aattcaaata gacttctcgt tctattgcag caatcgtctc agctgggaat
      301 ttattgcgtt cttttttatg ccaagatacg atttcttcta ccacttctct cggatccatc
      361 agcgttactt gatcaaaaga aatagggaat ttcgtgccgc cgagcaattc tttttgacgt
      421 gaataataaa tttctaactc ttcttccgga atatcacttg gatggataaa tgaatattcg
      481 gcaacttcac gtagaatttt ttcggaagag actccaagtt tatttctttc taataataaa
      541 tcgcgttctt tatataccat tttgcgttgt aaatcgatta cttcatcgta ggaaagcaaa
      601 tctttacgaa tatcgtagtt tgctccttct aggcgttttt gtgcatccac aacgacagca
      661 tgaattttcc ttgaattaac tggtttccca tcacgtggtg ctttgcgttt aagtttcgtg
      721 gaaagtttct cccagctctt actttcaaat tgttctaata aatcatcttc taaagaaatc
      781 ataaacttac tgaaaccagg gtcaccccgt cgtccagaac gtcccattag ctgtagatct
      841 atccgacggc tctcatggcg ctccgttcca attacagcta gtccgccaag cttatgtaca
      901 tctggatcca gcttgatatc tgtcccccga ccagccatgt tcgttgctaa agttaccatt
      961 ccgcgtttcc cagctttggc aattatttcc gcttcttggg catggttttt cgcatttaat
     1021 acttggtggg gaattccagc agcgtctaat aagccactga tccattcatt acttttaata
     1081 gaagaagttc ctattaaagt tggctgtcct ttttcatagc gccatgatac ttcatacaca
     1141 atcgcacgac ctttttcctt tttcgtatag aaaatatcat cttgcatatc ttcccgattt
     1201 acacgtaaat tggtggggat tactacgaca tccatgttat aaatttgacg gaattcttct
     1261 tcttcggttt tagccgttcc tgtcattcca gaaattttct tatacatccg gaagtagttt
     1321 tgaattgtaa ttgttgctag cgtacgtgat tcttctttaa cttccacgcc ctcttttgct
     1381 tcgattgcct gatggagtcc gtcattaaag cgccggcctg gaagcgcacg accagtatgt
     1441 ggatcgataa ttaatacttc atcatcaagc accacataat ctttatcttt atgcatcaag
     1501 aaatgagctc gcattaaaag catcgtaatt ctaagttctg actgcgcctc tgcggaataa
     1561 agtgattcga caccccaaaa cttctgggct ttctcaattc cagcatcatt caaccaaaca
     1621 aagcgtttat gttcttccat ctcataatca tctttcatca tcttcttcac aagcttattc
     1681 gctgtatgat aaagggacaa atcttcttct ttacggtcag aaatcagtag gggcgttctc
     1741 gcttcatcta ttaaaattga atctgcttca tctattaaaa caaaatcaag tccactttgt
     1801 actttatctt ctttttggcg taccatattg tcgcgtaagt aatcaaaacc aaattcagaa
     1861 gccgttccat aaataacatc tgctgtataa atggcctttt tttgggctat gtctaaacca
     1921 gattcattta aagcaacgga aacaccaaga tattccagca cttgtccaat ttcttcccgg
     1981 tcacgtctag ctaaatactc attggcagtc acaaggtgta cacgattacc acgcattact
     2041 tctataaaca taacaaataa cgacatcaat gttttacctt cgccggtttt catttctgcc
     2101 actttgccat cgccgagaac gagcgctcct attaattgca ctacaaccgc atccaaacca
     2161 ataattcggc tagctgcttc tctcgccaaa gcaaaaatat taattttatc tcgatcagtc
     2221 atcggttttg tcttaaactt ctcgcgccaa aaattagttt gttcacaaag ttcagcctga
     2281 tccatatttt tatataagcc ctcttttttt acaatttgac gggctatttc tcgatactgt
     2341 ttcactattt ttcgatcatc ataattttgt ctcattatat aacatcctcc ataccttcta
     2401 ttatagaata ccataaactc atctggcaat tcatttcgag tcacgaagaa cggaaaaact
     2461 gccgattttt atattacaaa tgtattaagt ttttctatta acaaaaaaca ataggtttcc
     2521 catagcgaaa gttgttgatt aacgttcaca tcccacttac actataaagg tttacccagc
     2581 agtacatctc aagccctaag aatacacgtt cgcttttcaa ctgttacaaa attattacaa
     2641 atagttggta tagtcctcta tagcctttgg agctattatc tcatcatttg ttttttaggt
     2701 gaaaactggg taaacttagt attaatcaat ataaaattaa ttctcaaata cttaattacg
     2761 tactgggatt ttctgaaaaa agagaggagt tttatgaata tgaaaaaagc aactatcgcg
     2821 gctacagctg ggattgcggt aacagcattt gctgctccaa caatcgcatc cgcaagcact
     2881 gtagtagtcg aagctggtga tactctttgg ggtatcgcac aaagtaaagg gactactgtt
     2941 gacgcaatta aaaaagcaaa caatttaaca acagataaaa tcgtaccagg tcaaaaatta
     3001 caagtaaatg aggttgctgc tgctgaaaaa acagagaaat ctgttagcgc aacttggtta
     3061 aacgttcgta gtggcgctgg tgttgataac agtattatta cgtcaatcaa aggcggaaca
     3121 aaagtaactg ttgaatcaac cgaatctaat ggctggaaca aaattactta caacgacggg
     3181 gaaactggtt tcgttaacgg taaatactta actgacaaag tagcaagcac tcctgttgca
     3241 ccaacacaag aagtgaaaaa agaaactact actcaacaag ctgcacctgc tgcagaaaca
     3301 aaaactgaag taaaacaaac tacacaagca actacacctg cacctaaagt agcagaaacg
     3361 aaagaaactc cagtggtaga tcaaaatgct actacacacg ctgttaaaag cggtgacact
     3421 atttgggctt tatccgtaaa atacggtgtt tccgttcaag acattatgtc atggaataat
     3481 ttatcttctt cttctattta tgtaggtcaa aaacttgcta ttaaacaaac agccaacaca
     3541 gctactccaa aagcagaagt gaaaaaagaa gctccagcag ctgaaaaaca agctgcacca
     3601 gtagttaaag aaaatactaa cactaacaca aatactacta cagagaaaaa agaaacaaca
     3661 caacaacaaa cagcacctaa agcaccaaca gaagctgcaa aaccagctcc cgcaccatct
     3721 acaaacacaa atgctaataa aacgaatacg aatacaaaca atactaatac aagtacacca
     3781 tctaaaaata ccaatactaa tacaaactcc aatacgaatg ctaatcaagg ttcttctaac
     3841 aataacagca attcaagtgc aagtgccatt attgctgaag ctcaaaaaca ccttggaaaa
     3901 gcttattcat ggggtggtaa cggaccaact acatttgatt gctctggtta cactaaatat
     3961 gtatttgcta aagcgggaat ctcccttcca cgtacttctg gcgcacaata cgctagcact
     4021 acaagaatct ctgaatctca agcaaaacct ggtgatttag tattctttga ctatggtagc
     4081 ggaatttctc acgttggtat ctacgttggt aatggtcaaa tgattaacgc gcaagacaat
     4141 ggcgttaaat acgataacat ccacggctct ggctggggta aatatctagt tggcttcggt
     4201 cgcgtataat taataactta aagtaacctg tggagcaagc agttcgcttc acaggttttt
     4261 tgttggaaat tttatcttaa tgaaagacgg tgcatgatga agaatctagt aaaagtaaaa
     4321 gtttttccta agttcacaaa aggctataag gaaggttatc cccttattct taaagagcgt
     4381 atggaaaaat ggccaaaaga attacaagaa ggcgacgtat tagaattaac agatacgaat
     4441 ggtcaattta ttgcaagagg ctaccacgga gaacaaaaca aaggcagcgg ctggcttttc
     4501 acttgggaca agaaacagca actcgatgaa gactttttaa cgaacctaat tacgacagca
     4561 atcgaaaaac gtcaatttct atttgcagat gactctacta ctgcttttcg gatttttaat
     4621 ggcgaaggag atggacttgg tggtttcact gttgattttt atgatggtta tctcgtaatt
     4681 caatggtaca gtctaggcat ctacgctttc caaaaaatga ttattgatat tttcttatct
     4741 tttccagaaa taaaaggtat ttatgaaaaa agacgttttc aagaagatac aaaagacgat
     4801 ttcgtcgccg gtcaaaaagc aactttccca cttattatta aagaaaatgg cattaattat
     4861 gcaacttatt tagatgatgg ttggatgaca ggtatctttc tagatcaacg ggatgtgcgg
     4921 agaagaatta gtgaggatta ttctgtttca aaaaatgtct taaatacatt ttcgtataca
     4981 ggggcattct cggtagcagc tttatttggt ggcgcgagta aaacgacaag cgtagatgtg
     5041 gctggtcgtt cgctcagcaa gacaaaagaa caattagaag taaatggtct tgatccaaac
     5101 gagcaagcga ttatcgtaga agatgttttc cattatttta aatatgcagc gcgcaaacaa
     5161 ttaacttttg atttagttgt tgttgatccc ccaagctttg cacgcacaaa aaaagtaact
     5221 ttccgagcgg cgaaagatta ccctgctatg cttcgtgaaa tcattgacat cactgctcca
     5281 aacggcacca tcattgcttc aacaaattat gcaggattcg gtatgaaagc atttaaaaaa
     5341 ttaattgcgg aggccttcca aacaagcgac cgtacttata aaattgttga aactcattcc
     5401 ttacccgcag atttcacggt aaataaaaac tttcctgagg ggaattattt aaaagtgctc
     5461 tttcttactt tagatatcta aaaaacagcg accgagtgcg gtcgctgttt tttatttatt
     5521 tttcactggt tggtttggca aaaagctttc aaaccatcta tataagtcat cttcttccgc
     5581 ttcgtttaca ttgtgaccga taaaataacg atgcttctcc acgtgacaac ccattttctc
     5641 gaaaagtcgg gcgatgtcat ctgcttcaga aatttggata acagcatctt ctataccgtg
     5701 accgataaaa attcgcttgt ctttcaacat taagttagcg ggtctttctt ccatataata
     5761 cggcaaacgc ccgcttaaca aggctgctgc tttatattga ccaccatagc tttgcataat
     5821 ggatattgtt agaactgcgc cttgatcaaa tcctgcaaga aaaacttgtt ctttatcaat
     5881 tgaaatgtaa tccgtacaaa ttttatcaat aaattgtgcg acacgcaggc ttatataatc
     5941 tacctcttgc gggttgggat caccttctgt caccatatga taaaaaccgt aagccggacc
     6001 atattctacg tctccacgca tggaaacaac aacgaaacga tccattaata attctagtcg
     6061 tcccgccatt tctagctcgt ccccaccaaa accatgaaga gcaaaaatca ctggaaaagt
     6121 atcttcatct tttctaccaa ttggttcgta aatatcataa gcaaacattc tcattcttta
     6181 caccagccct caatctaaca gtttttttag tacttctgct tcttcatcag ttagtgtaat
     6241 cccttttccc attttctcat gattttctga ccagtcgcgg atatcgtatt taggtgggcg
     6301 gccgttccag ctgattttgt ttaattcctt ccgccaacca cgcgcatttt cagataatac
     6361 gccaatttct tcgatgattt catattcaat attcgccaaa ataatcctta tcctttctga
     6421 ttctatatct accatactat caaatattta ccccaaatca catcgaaaca atcacaaatt
     6481 caaaaaatgc acccttccca ctagaatttt tgatttgatt gcgttacgat tgagaaggaa
     6541 taaagggttg gaggtgctta gttatgtcga ctgaaacaac agattatttg ctagaaacat
     6601 gcttaatggc aggcaaaata atgatggaaa gtggcgctga aatgtatcgc gtggaagata
     6661 caatgaaccg cattgcaacc atcgctagta ataaaaaagg gattagtttc gtgacgccaa
     6721 ctgggctttt tatgtcactt gaaggtgagc gtaatgtaca attacagcaa attcccacaa
     6781 gaaccattaa tttagaaaaa gtatctatgg tcaatgaatt ttccagggat ttcgcggaaa
     6841 agagaatttc cttaaaagaa ttacatacaa agctcgttaa tttagataaa gatgttcgct
     6901 actttcctat ttggttgcag attattgcgg catcactcgt tagtggatcg ttgatggtta
     6961 tttttggcgg gggttggttt gattttattc cgacttgtat cattggcgct attggtttta
     7021 ttatttttta ctacacgcag atttttatga aggtgaagtt tctagcagaa tttttagctt
     7081 cattaagtgt cgggctctta gctgttttga cgatttcgat tggttggggt attaatctgg
     7141 acacgatgat tatcggtggc gtgatgccgc ttgttcccgg ggtgccgatt acgaatgcgg
     7201 ttcgggattt gattgctggg catttgctta gtggaatggc acgtggaaca gaagcgctac
     7261 ttacttcttg tgcaatagga attggaatcg cggttgtttt ccgctttttc ttataaagga
     7321 ggcgctataa tggatttagt ttggactatt attattcaat tagtgctaag ttacgttgcg
     7381 acggtgacgt ttgcgattat tacaaacgtt ccgaaaagag cgttgaatgc ttgtggtatt
     7441 accggaacat ttggctggat ggcttattgg actttaatgc aaatggactc tggaacaggc
     7501 gcatcctctc tagcaggggc tttcgtcgtc gctgtactca gtcacttttt tgcgaaatat
     7561 aagaaattgc caattacgat ttttaatgtt ccgggaattg tcccgctcgt tcctggggga
     7621 cttgcttacc aagctgtgcg taattttgta ttaggtgatt atacggaagc aattggcttt
     7681 tctgtgcaag taacagtcgt tgctggcgcg attgccgctg gattaatgtt atcagaggtt
     7741 ttcaatcata gtattagaac attccgtgag cgtaaagaac gtatttgaaa aaaaccaatc
     7801 tctaatagag attggttttt ttcaaataca cggcttctca ctttatggcg caggaatcat
     7861 tactccataa acaaatatct gatacgtaac cactacattt tctccagtaa gtgtcccttc
     7921 atggttggct ggtatacttc ggtagttttc ccacttctca atcccgctac tactaaagtc
     7981 aggattttgc gaaatcacat aggggatttc attgcctttg tcatctatta tattgaaggt
     8041 cattctttct ggtaaggaat acgtttctcc ttctttagca gaaagaacaa tatcagatac
     8101 tgcttctcct tggctataga tttgttgatt ataatttaat ctcatatggt attggtctaa
     8161 attaggataa acaggtacta aatcaccatt tttataggtt gttaaatccg ttaaaacaaa
     8221 tggatttcca ttgttatcaa caaacttaat tgttatggta acatcttgtg cttctttcgt
     8281 ataaatataa gttacttgcg tggcttgatt tgtgaacgtt ccattcgcat tgttcggtag
     8341 ttttgttgta tctaaaacat aaccatcaat ttgtaatttg tatttatctg ttgaagcatc
     8401 gtaaggttcg ccaacatttc cgctaattgt ttgtggctcg tggattggtt ttccatcttg
     8461 atcgaggtat ctaacagtta cagtagctac ggacactttt tgataaacat aagtaacgac
     8521 ttgtgctttt tctgtaaaag tcccggttgc ttctcctttg acttctttcc acgtatagcc
     8581 ctcgatattt ttcatagaag tctgatatgg tttgccgatg tcgccttcta atgtttcagt
     8641 ggccgcaact gaatttcctt gttcgtcttg atagtttacc gttacaatcc ctttttcaac
     8701 cgggggcgct gtattatttt tacttgtatg tatatatcct acgtatgtat accctgcaat
     8761 tgattcgggt tgtttcgttt cttttgttcc ttttacgacg gtttgagatt cttgggtttt
     8821 taagttacta ttctctgttg cttgaacaat cgacccaact aacaaactac taccgccaag
     8881 gacaagaaga aatactaaca gctgcttagc gtgtcttttt ttcaatgtaa gaagcc
//
LOCUS       DASEAA010000110         8874 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.110, whole genome shotgun sequence.
ACCESSION   DASEAA010000110 DASEAA010000000
VERSION     DASEAA010000110.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8874)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8874)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8874
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.110"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            41..937
                     /locus_tag="U0342_002034"
     CDS             41..937
                     /locus_tag="U0342_002034"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rgg family transcriptional regulator"
                     /protein_id="HEM2423377.1"
                     /translation="MVGYGKTVRDIRTSKGIHQKDLYDNIISKSFAIEFEKGKHDITL
                     TLFEKILKRMNMDLDEFFYIHRELSVSAEKNYLCMNQERGNIYDLASLELLYSELSKH
                     NGELVEVWKAFVRSRIKLVEHLFKYHEFTVDVITPKDKCTIQKYLFSIDTWTLEELKI
                     CANSIYFFEEDLQIQFLNQVIKAIHSYKNYDRARRVLCTLLINTIEMFISRGQIASAS
                     KLIILLDSLCLYNESAFYRNISHFLKGLVKMQNNHIQEGYNQAKKAIQIMNDLRFEEI
                     AYLYEILLDQFIRIKGIDIVKS"
     gene            complement(934..1563)
                     /locus_tag="U0342_002035"
     CDS             complement(934..1563)
                     /locus_tag="U0342_002035"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738330.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease III domain-containing protein"
                     /protein_id="HEM2423378.1"
                     /translation="MNVNEQKVLVLNNLVEHYGYQDWWEADNRLADWLSMILIQRTTE
                     KNAKQALANLAPYLDLDSLIEMDKAKLEELIYPAGFYKQKSIYIKALAEWFYGHGASL
                     DKFQTYSTEALRKELLGIKGVGEETADAMLLYIFERNVFIADLYARRLFTRLGFGEYT
                     TYEQMREEFMPIIENIPHKLCKEWHSVIDVHGKHFGKDKSMNESWLLES"
     gene            complement(1606..2022)
                     /locus_tag="U0342_002036"
     CDS             complement(1606..2022)
                     /locus_tag="U0342_002036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464184.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423379.1"
                     /translation="MSIIARELTKAEEAEIIRLKEEGEVMLQTDGTPEERIEKIAEYL
                     KQTSPDPDLAEELGYILGSLYGEAVREKYEWRWLFVSENDLEGYAITSKEHGYTFMVH
                     DYFMQVIVQNKPDNSKMLFELMVDMTGNRNDFRMIG"
     gene            2142..2705
                     /locus_tag="U0342_002037"
     CDS             2142..2705
                     /locus_tag="U0342_002037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF420 domain-containing protein"
                     /protein_id="HEM2423380.1"
                     /translation="MEQNKEKLTKPTSEKNYFWPIMIISFVAVVVILLLFFSPIGYQG
                     AVHFDITIFPRMNAIFNSFTFVFLVIALWAIIKKKNIKMHRGFILAAFTSTLFFLVTY
                     LTFHYLSAETSTFGGTGIIRPIYFFILITHSFLAAIVVPLALFALVWGWTMQIEKHKK
                     IVRWTMPIWLYVSLTGVLVYLFMAPYY"
     gene            complement(2751..3458)
                     /locus_tag="U0342_002038"
     CDS             complement(2751..3458)
                     /locus_tag="U0342_002038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein phosphatase"
                     /protein_id="HEM2423381.1"
                     /translation="MKPIFAVGDVHGEITLLDELLENWDKEQERLLFVGDLIDRGENP
                     AAVLRRVKALADQTGAIVLKGNHEQMLLDFLENPSGKMHYYLSQGGMETIQSLIADSL
                     DKKMTPEGLAERVKEEAAELIDFIRNLPLYYEEGKYVFVHAGVDLTKKDWHDTEERDF
                     FWIREPFLFGQNKTGKVFIFGHTPVQNLHIDESSGIWVSEDKTRLDIDGGAVFGGELH
                     GIVVEEKVITKSFSVKK"
     gene            complement(3526..3735)
                     /locus_tag="U0342_002039"
     CDS             complement(3526..3735)
                     /locus_tag="U0342_002039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423382.1"
                     /translation="MAHENLRELEDQLIELRQTYQEVISETREFEDPQLQNGPINAAE
                     VRLSALRHEIAEVEKKIKKAESKTE"
     gene            3926..4918
                     /locus_tag="U0342_002040"
     CDS             3926..4918
                     /locus_tag="U0342_002040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464180.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF975 family protein"
                     /protein_id="HEM2423383.1"
                     /translation="MTISQVKQTAKESLRGNWGIAIGIFVLAWLIETVGGGLIGWIPV
                     IGWIAIFLLTGPLYTGVAWVYLAISRREQPDVAYMFSGFKQFGRTVLAYLLISIFTFL
                     WSLLLIVPGIIKTYSYSQTFFILRDNPNISALDAITESRHMMNGHKGRLFGLSLTFLL
                     WYLIPLAVAIAGTVIVAGGMATTSYTADPAEVLSALAAGATFGGLVLILASWLITLGI
                     SLYVYPYLITSIAVFYDDLYAATEGTFTEETVIVEEEVNPFGTTEADPFAEDTHPEGF
                     GPEATKEPETPVVPEAPEAPETPETPEVPETPEAPETPEAPETPEAPKDNNEPK"
     gene            4905..5441
                     /locus_tag="U0342_002041"
     CDS             4905..5441
                     /locus_tag="U0342_002041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423384.1"
                     /translation="MNQNKITAGGLEFLVRFALPTDRLKIHDLMMDTARWLKESGSTQ
                     WSDILHGFDVHNIEQRIELGEVALFETEAGALAGAMIIRKTPSDWDTDLWEDLAIDKA
                     YYLHRIMVSRAFSGISLSKQMIYFAEKLGIEMSVPFIRLDCIESNETLNQMYVRYGFQ
                     FSGKKNGFYLYQKELSQK"
     gene            complement(5451..6098)
                     /locus_tag="U0342_002042"
     CDS             complement(5451..6098)
                     /locus_tag="U0342_002042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2423385.1"
                     /translation="MANKFKTLDKMVYNLLLEKIKNGELVANEHLAEEKLAREFGVSR
                     SPIRKAIATLTAQGIVSYHENSGAVLNDCIVDSDRYVQLMETIEIFVDAAIAKAAHFG
                     YEMDLEKLYARMQEMERLSYLTDIENYYDAHHRFILCLISFAENPYQVRIVKQIFFQM
                     IHFSDGINMFKSVEIREWTNKKSNQICELLAEEETELARKTIKSMFAELTIQAYR"
     gene            complement(6144..8834)
                     /locus_tag="U0342_002043"
     CDS             complement(6144..8834)
                     /locus_tag="U0342_002043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YhgE/Pip domain-containing protein"
                     /protein_id="HEM2423386.1"
                     /translation="MRKVYEIFILDWRRLFKAPLALLLVIALIILPSLYAWFNIEALW
                     DPYSNTSGIKVAVSIDDEGAEIDVPGKKPQQVNVGDQLKKTLEKNKKLGWTFVSEDEA
                     KKGVKSGKYYASIHIPKDFSEDMVSVVNDNVTKPTIDYSVNEKINAIAPKMTESGATT
                     IVNQISSEFVGTVSKAVLEEFNKAGIDLENELPTIRRLKTKVFQVQDALPELKKMGAE
                     AVKIEAKLPELKAKANQVVELNEKIPELNKATENVLLVEQQLPKIDQLGQDILVLQKK
                     IPEIKQIAESVKEVDENFGTIKKTVNDAVNESGKALDVIDTAMAAIPTVEKIAQNGSG
                     YVDKVSDFADEINKSFDTLAPAIKQNLTLMKQMADNIYQVTEAIKNGSITPEQAITEL
                     KKMEQDIDSLQQMITKQTATLESLNETLPNKPFTDLIANLKTINSQLGAQKETITKVR
                     TELEDGAQPSEELLNQLNEQAKKVSAKLDQILANYDSEIVPAIKVGLNQIQGDLKDSQ
                     KLLETLQAKIPEITQVLKDSRETLQTGQTYLKEFQERLPEIQKTLDEATKVINTKLDT
                     IIAGINEAANFYQNDYPNVKANIKKAANFIRDDLPGLEKEINQASNLIQEKMPEFEKA
                     IKIAADLSREELPEFEKAINNAANKITDFDKNYDLQSIIKMLRNDADKDSSFIANPVK
                     LKETSYYPIPNYGSASSPFYTALCLWVGALLLISLLRVDVEVPAGIFSHYHRYFGRLL
                     TFLSIGLMQALIVTLGNIFLLGVSIAEPLLHVLFSMFISVVFMTIVYTLVSLFNNVGK
                     GIAIILLVLQISGAGGNFPIQVSPPFFQAIYPFLPFTYAVSLIRESVGGLYMPTVWID
                     MSVLAGFAILFITLGILLKKPLDKVVPKLSEKAKRSKLIH"
BASE COUNT         2530 a         1826 c         1539 g         2979 t
ORIGIN      
        1 cagcccacat ctaaattatg aaacaaaagg agtaacttga atggtcgggt atggaaaaac
       61 agtgagagat attcgcactt ctaaaggaat acatcaaaaa gatttatacg ataatatcat
      121 ttccaaatcc ttcgctatcg aatttgaaaa aggaaagcac gacatcacac taaccttatt
      181 tgaaaaaatt ttaaaacgga tgaatatgga cttggacgag ttcttttata tccatagaga
      241 attgtcagta tcagctgaga aaaattattt atgcatgaat caagaacgcg gaaatatata
      301 tgatcttgca agtttggaac tattatatag cgagctttct aaacataatg gcgaattagt
      361 ggaggtctgg aaagcatttg ttcgttcgcg aattaaattg gtcgaacatc tctttaaata
      421 tcatgaattt acagtagacg tgattacacc taaagataaa tgcacgattc aaaagtattt
      481 attttcgatt gatacgtgga cacttgaaga acttaagatt tgcgctaact ccatctactt
      541 ttttgaagaa gatttacaaa ttcaattttt aaaccaggtc attaaggcca ttcactctta
      601 taaaaactac gaccgtgcca gacgtgtttt atgtacgctt ttaattaata cgattgaaat
      661 gtttatttcg cgcggtcaaa tagcttctgc tagtaaactc atcatcctat tagactcttt
      721 atgtctgtat aacgaaagcg ccttttaccg aaatatctct cattttttaa aagggttagt
      781 aaaaatgcaa aataatcata tccaagaagg atacaatcaa gcaaaaaaag ccattcaaat
      841 tatgaatgac ctccgttttg aagagattgc ttatttatat gaaattttgt tggatcagtt
      901 tatcaggata aaaggtatag atattgttaa gagctagctt tctagcagcc aagattcatt
      961 catacttttg tctttcccaa aatgttttcc gtgaacatca atgactgagt gccattcttt
     1021 acaaagttta tgtggaatat tttcgattat cggcatgaat tcctcgcgca tttgttcata
     1081 agttgtatat tcaccaaaac ccaacctagt aaatagtcgt ctggcatata aatcagctat
     1141 aaacacattc cgctcaaaaa tatacagcaa cattgcatcc gccgtttctt ccccgacacc
     1201 ctttatgcct aacaactctt ttcgtaaagc ttccgttgaa tacgtctgaa acttatctaa
     1261 actagctccg tgaccataga accactcagc aagtgcttta atatagatac ttttttgttt
     1321 ataaaaaccc gctggataga ttaattcttc caatttcgct ttatccattt caattaagct
     1381 atctaaatct aaatatggtg caaggttcgc taatgcttgt ttggcatttt tctctgtcgt
     1441 acgctggatt aatatcatcg aaagccaatc agccagacga ttatccgctt cccaccaatc
     1501 ttgataacca taatgctcca ctaaattatt taaaactaac actttttgtt cgtttacatt
     1561 caccttgcat cacctcaaaa aggaatcaaa aaacagttat tctccttaac caatcatccg
     1621 aaaatcgttt cgattcccag tcatatcaac catcaattca aatagcattt tgctattatc
     1681 tggcttattc tgaacgatta cttgcataaa ataatcatgc accataaatg tatagccatg
     1741 ctctttcgac gtaatcgcgt agccttctaa atcattttct gagacaaaca gccagcgcca
     1801 ctcatacttt tcacgcactg cctctccgta caaagagcct aaaatataac caagctcttc
     1861 tgctaaatca gggtctggcg aggtttgttt taagtactca gcaattttct cgatgcgttc
     1921 ttctggagtt ccgtctgttt ggagcatcac ttcgccttct tcttttaaac ggataatttc
     1981 agcttcttcc gctttcgtta gttctcgtgc aataatcgac attagaaaca ccctttcccc
     2041 acccattata actcaaaagc tcaatctttc gcatccgata tgttcgtcat gtataatgaa
     2101 agaagtacag caatttttat atttaggggg ctattttttt catggaacaa aataaagaaa
     2161 aactcacaaa accgacatca gaaaaaaact atttttggcc gataatgatt atttcatttg
     2221 tcgcggttgt ggtgatttta ctactcttct tctcaccaat cgggtatcaa ggagcagtgc
     2281 atttcgacat tactatcttc ccgcgaatga acgccatctt taatagtttt acctttgtat
     2341 ttttagttat tgcactttgg gcgattataa aaaagaaaaa cattaaaatg caccgtggct
     2401 tcattttagc agcatttaca tctacattat tcttcttagt aacttactta acattccatt
     2461 atctttcagc agaaacttct acatttggcg gaactggaat tatccgtcct atctacttct
     2521 tcattttaat tacacatagt ttcttagcag caatcgttgt tccactagcg ctatttgcac
     2581 ttgtttgggg ctggacgatg caaattgaga aacacaaaaa aatcgttcgc tggacgatgc
     2641 cgatttggct atatgtcagc ttaactggcg tactcgttta cttatttatg gcaccgtatt
     2701 attaaacaaa aaagcatcga atgagcgctt caaaagagcc cattcgatgc ttattttttt
     2761 acagaaaaac ttttcgtgat gactttttct tccacgacaa tcccgtgaag ttctccgcca
     2821 aaaaccgcgc caccatctat atcgagcctc gttttatctt ccgaaaccca aataccagaa
     2881 ctttcatcaa tatgtaaatt ttgtaccggg gtatgcccga aaataaagac tttcccggtt
     2941 ttattctgtc caaataagaa aggttcgcga atccagaaaa aatcacgctc ctcggtatcg
     3001 tgccaatctt ttttcgtcaa atctacgcct gcatgtacaa atacatattt gccttcttca
     3061 taatagagtg gcaagttccg gatgaaatca atgagttcag cagcttcttc ttttacccgt
     3121 tccgcaagtc cctccggcgt catttttttg tcaagcgagt ccgcgattaa ggattgaatt
     3181 gtttccatac cgccttgact taaataataa tgcattttcc cagaagggtt ttcgagaaaa
     3241 tctagtaaca tttgttcgtg atttcctttt aagacaatcg ctcccgtttg gtcggctaat
     3301 gctttcactc ttctaagtac tgcagctggg ttttcgccgc ggtcaatcaa atcccctaca
     3361 aacaaaagcc gttcttgctc tttatcccag ttttcgagta attcatctaa aagcgtaatc
     3421 tctccgtgta catctcctac agcaaaaatt ggcttcatgc ttatacctcc agatctacgt
     3481 aaaagaaacg cccctctgca aaataaacaa atggacgctt ttttcttatt cggttttgct
     3541 ttctgctttt ttgattttct tctctacttc ggcaatttcg tgacgtaatg cacttaatct
     3601 aacctcagct gcattgattg gtccattttg gagttgtggg tcttcaaact ctcgtgtttc
     3661 actgattacc tcttgatatg tttgtcgcaa ttcaatcaat tgatcttcta gttctcttaa
     3721 attctcatgg gccatacgcg ccacctccaa attaatcata ctacacaatt ttacttttcc
     3781 ccattaaata gaaatataat ccttttttta gcattttttt gtaacacttc ttattactgt
     3841 attagtccta gaaaatgtgc tattttaaag gtaggtattt ttgctattat acttaaaaat
     3901 aaatgaaaaa ggagttttta ctatgatgac tatttcacaa gtaaaacaga cagcaaaaga
     3961 gtcgcttcgt ggcaactggg gaattgccat tggaatattt gtacttgctt ggctaatcga
     4021 aactgttggt ggaggattaa ttggttggat cccagtcatt ggttggattg caatattcct
     4081 actaactgga ccactttata ctggggttgc ttgggtgtac ctagcaatta gccgccgtga
     4141 acaaccagat gttgcttata tgtttagtgg ttttaaacaa tttggacgta cggtcttagc
     4201 ttacttacta atctctattt tcacattctt atggagctta ctcttaatcg taccaggaat
     4261 tattaaaact tactcttatt cacaaacatt ctttatctta cgagataacc caaatatttc
     4321 tgcgctagat gctattacag aaagccgcca catgatgaat ggacacaaag gtagactttt
     4381 tggactatct cttacattcc ttttatggta tttaattcct cttgctgttg cgattgcagg
     4441 tacggttatc gttgctggcg gaatggctac tacatcttat acagctgatc ctgctgaagt
     4501 actttcagct cttgctgccg gtgctacgtt tggtggactc gtgttaatct tagcatcgtg
     4561 gttaattact cttggtattt cgctttatgt ttatccttat ctaatcactt ctatcgctgt
     4621 gttctacgat gatttatacg cagcaacaga aggcactttt acagaagaaa cggtcatcgt
     4681 ggaagaagaa gtaaatccat ttggaacaac agaagctgat ccatttgctg aagatacaca
     4741 tccagaaggc ttcggaccag aagcaacaaa agaacccgaa acgcctgtag taccagaagc
     4801 tcctgaggct cctgaaacac cagaaacgcc ggaagttcct gaaactcctg aggcacccga
     4861 gactccggaa gcacccgaaa caccggaagc tccaaaagat aacaatgaac caaaataaaa
     4921 ttacggctgg cggactggaa tttctagtcc gctttgcttt gccaactgat cgactaaaaa
     4981 tacatgactt aatgatggat acagctcgct ggttaaaaga gtcggggtca acccagtgga
     5041 gcgacatttt gcatggtttt gatgtccata atatcgaaca acgtattgaa cttggtgaag
     5101 ttgccctttt tgaaacggaa gcgggtgcac ttgcgggcgc aatgattatt cgaaaaacgc
     5161 caagtgattg ggatacggat ttatgggaag atttggcaat tgataaagca tattatttac
     5221 accggattat ggtttctcga gcattttccg gaatttcatt aagtaaacaa atgatttatt
     5281 ttgcggaaaa attaggtatc gaaatgtccg ttcctttcat tcggttagat tgcatcgaaa
     5341 gcaatgagac gctcaatcaa atgtatgtcc gctatggttt tcaattttct ggtaagaaaa
     5401 acggttttta tttatatcaa aaagagctgt cacaaaagtg acagctcttt ttatctgtag
     5461 gcttgaatcg ttaattccgc aaacatagac ttaattgttt tcctggctaa ttcagtttcc
     5521 tcttctgcga gcaactcaca aatttggtta cttttcttgt tagtccattc tctaatttcg
     5581 acggatttaa acatattaat tccatctgaa aaatgaatca tttggaagaa aatttgcttg
     5641 acgatacgga cttgataggg attttccgca aaactgatta aacaaagaat aaagcgatga
     5701 tgtgcatcat aataattttc tatgtcagtt agatacgaaa ggcgctccat ctcttgcata
     5761 cgagcataca atttctccaa atccatttca taaccgaaat gagctgcttt cgcaattgct
     5821 gcatcaacaa aaatttcaat ggtttccatc aattgcacat agcgatccga atcaacaata
     5881 caatcattta aaacagcacc gctattttcg tgataactaa caataccttg agcagtaagc
     5941 gttgcaatgg cttttcttat tggcgaccgg ctaacaccga attccctagc caacttttct
     6001 tctgctaaat gttcattcgc cactaactcg ccgtttttga ttttttcaag aagtagatta
     6061 tacaccatct tatctaatgt tttaaatttg tttgccacaa agtctgcccc ctcttcgctc
     6121 gtaattatat cacagaaaaa atattaatgg atgagcttgc ttcgttttgc tttttctgat
     6181 agcttgggta ctactttgtc tagtggtttt ttgagtaaaa tgcctagcgt gataaagaga
     6241 atggcaaatc cggcaagaac actcatatcg atccaaaccg ttggcatata aagcccccca
     6301 acactttccc gaattaaact aacggcataa gtgaatggca agaaaggata aatagcttgg
     6361 aaaaatggtg gcgaaacttg aattggaaag ttcccgcctg ctcctgaaat ttgtaaaact
     6421 aacaagataa tcgcaatccc ttttccaaca ttattaaata gcgatacgag cgtgtagaca
     6481 attgtcatga acaccacgct gataaacatg ctgaatagta catgtagtaa tggttctgcg
     6541 atggataccc cgagcaagaa aatattcccg agcgtcacga taagcgcctg cattaatccg
     6601 atagatagga aggtcagcaa tcggccaaaa tatcggtgat aatggctgaa aattcctgcc
     6661 ggcacttcta catccacacg taataacgaa atcaacaaga gcgcaccgac ccataaacaa
     6721 agagctgtat aaaatggcga acttgccgaa ccataatttg gaattggata gtagcttgtt
     6781 tcttttaact taactggatt ggcaataaat gaactatctt tatctgcgtc atttctgagc
     6841 atcttaataa tgctttgcaa atcgtaattt ttatcgaaat cggtaatttt attcgctgca
     6901 ttattaatgg ctttttcgaa ttccggcaat tcttccctcg aaagatcggc cgcaatttta
     6961 atcgcttttt cgaattccgg cattttttct tggatgagat tggaggcttg atttatttct
     7021 ttttcaagcc ctggtaaatc atcacgaatg aagttggccg ctttttttat gttcgctttt
     7081 acattcggat aatcgttttg gtaaaagttg gctgcttcgt taatgcctgc gataatcgtg
     7141 tcgagcttgg tgttgattac ttttgtcgct tcatctaacg ttttttgaat ttctggtaag
     7201 cgttcttgga attcttttaa gtatgtttga ccggtttgta gtgtttccct cgaatctttt
     7261 aaaacctgcg taatttctgg gattttcgct tgtagggttt ctaatagttt ctggctgtct
     7321 ttcaaatctc cttgaatttg gtttaagccg actttaattg ctggaacgat ttcagaatca
     7381 tagttcgcta aaatttggtc taacttcgcg ctaacttttt tcgcttgttc attcagttga
     7441 tttaaaagtt cctcggaagg ttgagcgcca tcttcaagtt ctgtgcgtac ttttgtaatc
     7501 gtttcttttt gcgcgcctaa ctggctatta atcgttttta aattcgcaat taaatcagta
     7561 aatggcttat tcggcaatgt ttcatttaaa ctttctaatg tcgctgtttg tttcgtaatc
     7621 atttgctgca aggaatcaat atcttgctcc atttttttca attccgtaat agcttgttct
     7681 ggcgtgattg agccattctt gattgcttct gtcacttgat agatgttgtc cgccatttgc
     7741 ttcattagcg ttaagttttg tttaatagca ggcgctaacg tatcaaagga cttattgatt
     7801 tcatccgcaa aatcagatac tttatccaca tagccgctgc cattttgagc aattttttct
     7861 accgttggaa ttgccgccat tgctgtatca atcacatcaa gcgctttgcc cgattcattc
     7921 actgcgtcat tgaccgtttt cttaatcgtt ccgaagtttt catctacttc ttttaccgat
     7981 tcggcgattt gtttgatttc cgggattttc ttttggagca ctaaaatatc ttgcccgagt
     8041 tggtcaattt ttggtagttg ttgttccact aataagacgt tttctgttgc tttatttagt
     8101 tcaggaattt tttcatttag ctcgacaact tggtttgctt tggcttttag ttcgggtagt
     8161 ttggcttcta ttttgaccgc ttctgctccc atttttttca gttctggtaa agcatcctgc
     8221 acttggaata ccttggtttt taggcgacga attgttggca attcattttc aagatcaatc
     8281 cccgctttat taaactcttc caaaacggct ttactaactg tgccgacaaa ctcagaacta
     8341 atttgattta caatcgtcgt tgcgccactc tcggtcattt ttggcgcgat agcattgatt
     8401 ttttcattga cggaataatc gattgtcggt ttggtaacat tatcatttac gaccgaaacc
     8461 atatcttctg aaaaatcttt tggaatatga atagacgcgt agtatttccc acttttcacg
     8521 ccttttttcg cttcatcctc acttacaaaa gtccaaccga gttttttatt tttttctaac
     8581 gttttcttga gctggtcccc gacgttcact tgttgcggct ttttccctgg tacgtctatt
     8641 tccgcgcctt catcatctat cgaaactgcc actttgatcc ccgaagtgtt ggaatacgga
     8701 tcccaaagtg cttcaatatt aaaccaagca tataatgatg gcaaaataat taatgcaatt
     8761 actaataata aagctaaagg cgctttaaag agacggcgcc agtctaaaat aaatatttcg
     8821 tatactttcc gcatcaaaag cacctcctgt ttttaagcaa tttaccttta gaaa
//
LOCUS       DASEAA010000111         8797 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.111, whole genome shotgun sequence.
ACCESSION   DASEAA010000111 DASEAA010000000
VERSION     DASEAA010000111.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8797
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.111"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..184)
                     /locus_tag="U0342_002044"
     CDS             complement(<1..184)
                     /locus_tag="U0342_002044"
                     /EC_number="3.6.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acylphosphatase"
                     /protein_id="HEM2423387.1"
                     /translation="MARDTAILRVTGFVQGVGFRYTTKHVAYKYDISGTVKNLDDGSV
                     EIHAIAEEENLNKFIDA"
     gene            324..671
                     /locus_tag="U0342_002045"
     CDS             324..671
                     /locus_tag="U0342_002045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1033 family protein"
                     /protein_id="HEM2423388.1"
                     /translation="MTKWNVYLTKGEYEPWWFFEEWETSIQADFAFSDKEAAFLKYQE
                     LADELLRNYPNHQTKKDCLLAAWNEEEVEYCEDCEDDIQTFHGLILFSDGEVYQPTPE
                     EKETIFKPVLTFA"
     gene            700..1776
                     /gene="fni"
                     /locus_tag="U0342_002046"
     CDS             700..1776
                     /gene="fni"
                     /locus_tag="U0342_002046"
                     /EC_number="5.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 2 isopentenyl-diphosphate Delta-isomerase"
                     /protein_id="HEM2423389.1"
                     /translation="MQKNDDLLRERRKDEHVALGVKQNEQLAPSSLEDIQLIGTSIPR
                     YNVKDIDLTTTIVGTNVPFPLYINAMTGGSRHTKKINAELAEIAREVAIPMAVGSQSA
                     ALKNSSLIDTYKIVREINPNGMILANISPEVALQEGLRAIEMLEANALQIHINPAQEL
                     VMQEGDRSFSHWLTRIEEYVKLSPVPVVVKEVGFGMTRETVKTLADIGVQTVDLAGKG
                     GTNFAQIENDRRRDQAYDFLLDWGISTGQALIDMQHQDAPKIAYLASGGIRNPLDIVK
                     ALALGADSVGMAGQIIYSLKKEGVTKTIEKLELWKEQLRGLFVLANAKNISELKTTPL
                     IISGELAKWGALREIDLVKLANRK"
     gene            complement(1816..2775)
                     /locus_tag="U0342_002047"
     CDS             complement(1816..2775)
                     /locus_tag="U0342_002047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-related sulfurtransferase"
                     /protein_id="HEM2423390.1"
                     /translation="MSDYQVLLYYKYTTIDDPETFAKEHLAACKEMELKGRILVATEG
                     INGTVSGTVEATNKYMDYMANDARFADMVFKIDAADAHAFKKMHVRPRAEIVSLSLEE
                     DVNPLEVTGTYLEPSEFREALLDEDTVILDARNDYEFDIGHFRGAVRPDIQNFRELPG
                     WIEDNREQLADKKIVTYCTGGIRCEKFSGWLKTAGFDDVSQLHGGIATYGKNEETKGE
                     LWDGQMYVFDERIAVPINQVNPTIVGKDYFDGTPCERYINCANPYCNKQILASIENEK
                     KYLRSCSHDCRVHPANLYTKNLSKEEFTERLQAIDETLPEMVQ"
     gene            3026..3952
                     /locus_tag="U0342_002048"
     CDS             3026..3952
                     /locus_tag="U0342_002048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464910.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2423391.1"
                     /translation="MSYVQINESFMEELALKKVKQERRKRLKWFVYKFLMITFGAILM
                     GVGLELFLVNNRILDGGVVGISIIISQLTPLPLGVLTFVLNIPFFIIGYRKIGKVFAL
                     FTLYGIAVMSIVTLVLHDMDPVTDDLLLATVFGGMTLGLGVGLVIRNGGALDGTEIIS
                     IIINGRTPFSTGQIIMFINIVIFIVAGLVFNWDRAMYSLITYFLAYKVIDIVIQGVDE
                     SKSAFIISRYYEEIGAEIMEQLGKGVTYLDATGGYSGDVRKVVFVIVSRFEEVKVKAI
                     LDEIDPDAFLAVGGSMSEVRGGKLMNTKTPHL"
     gene            4103..6376
                     /locus_tag="U0342_002049"
     CDS             4103..6376
                     /locus_tag="U0342_002049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA translocase FtsK"
                     /protein_id="HEM2423392.1"
                     /translation="MATQKKKTSGRKKSSTRSKKKQSASFRLEITGVILIAIGVIGLL
                     QLGFVGRGFFALAEMFVGLLSYVLLAGSVILGGYMVIRRKMPHLFSKRLVGIYLIVLG
                     FLTYIHMYFIIHNLGANASVISSTWKLVLENLFRPNQVGFVGGGMIGAVITSVTYFLL
                     DRLGTNLIAVLLIIYGFSLVSGISIRQFFSKIAEFVRYLFAKGKVATEKGKEVKAKRD
                     KKKAEKIVEVEPDEVLDVVDPAQEEKAPPIISNFSSKVEQEKAPVEEKTTKQEQDLEM
                     FQQESFENEIYQLPPVDILAPAKVTDQSKEYDQIKVNAKKLEDTFESFGVKAKITQVH
                     LGPAVTKYEVQPSVGVKVSKIVSLSDDIALALAAKDIRIEAPIPGKSAIGIEVANQNV
                     AMVSLREVLENNPKNNPDEKLQIALGRDISGEAMMASLDKMPHLLVAGATGSGKSVCI
                     NGIITSILLRAKPHEVKMMMIDPKMVELNVYNGIPHLLAPVVTNPKKAAQALQKVVAE
                     MERRYDLFSHTGTRNMQGYNDYVKKHNELNEEKQPELPFIVVIVDELADLMMVASNDV
                     EDAITRLAQMARAAGIHLIIATQRPSVDVITGVIKANIPSRIAFAVSSSIDSRTILDM
                     GGAEKLLGRGDMLLLPVGSSKPTRIQGAFLSDAEVEDVVNYVISQQKAQYSEEMIPDD
                     IPEVEGEVTDELYHEAVELVVEMQTASVSMLQRKFRIGYNRAARLIDEMEQRGVVGPH
                     EGSKPRRVNVEINPEHE"
     gene            complement(6410..7249)
                     /locus_tag="U0342_002050"
     CDS             complement(6410..7249)
                     /locus_tag="U0342_002050"
                     /EC_number="1.5.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyrroline-5-carboxylate reductase"
                     /protein_id="HEM2423393.1"
                     /translation="MAKIGFIGFGSMASLIATKIIETEVATPEELILYSNSKNEHFNQ
                     FYNKYPTAKLADNEAEIFTKADHSFVCKLPLAVLPLMKDCAAVLTPDRHVISIAAGVS
                     TSDIIEITPGLQVSKLIPSLTTAVNVGTTLIAHADTVNQANTSWLETTFEHFGHVMTI
                     REENMDIASDLTSSSPGIIAAIFEQFVEAALRRSSLSDAEVFQMINFALAGTSKLLVE
                     EDYTFSGLIERVATKGGITAEGIELSEEQLPQFFDELLDRTQTKYASSKKEIQAQKQD
                     LLL"
     gene            7602..8675
                     /locus_tag="U0342_002051"
     CDS             7602..8675
                     /locus_tag="U0342_002051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BMP family protein"
                     /protein_id="HEM2423394.1"
                     /translation="MKKRTFALALSMIIASGVILGACGSSSDDKKSSDDKSSKDFTVA
                     MVTDTGGVDDRSFNQSAWEGLQKFGKANDMEKGTDGYNYLQSASEADYKTNLNTAVRS
                     DYDLIYGIGYKLKDAIEEVSKQKPKNQFAIVDDTIDDRDNVVSIGFKDNDGSYLVGVV
                     AGLTTKTNKVGFVGGVKGTVIDRFEAGFTAGVKAVNPNAQIDVQYANDFAKADKGQQI
                     ASSMYSSGVDVIFHAAGGTGNGVFAEAKNLKKKDPSRAVWVIGVDRDQWDEGKVTAND
                     GKDYNVTLTSEIKRVDIAVEDLATRAKAGDFPGGTKIEYGLDKDAVGLSEHQDNISKD
                     VLAKVEEYKQKIVDGDIKVPEKP"
BASE COUNT         2860 a         1522 c         1796 g         2619 t
ORIGIN      
        1 tagcatcaat gaatttattt aagttttctt cttcagcaat tgcatgaatt tcaacggaac
       61 cgtcatctaa atttttcact gttccactaa tgtcatattt gtaagcaacg tgtttggttg
      121 tgtaacgaaa tccaacacct tgcacaaatc cagtcactct caaaatcgct gtatctctag
      181 ccataacgaa accaactcct tttatttttc cttattacta gtgtatcttt ttttagcatt
      241 actttcaaaa atttgcattc cagtatttcc agaaagctta tgctataata agtgtactat
      301 atttactgtt gggagttttt gatatgacaa aatggaatgt ctatctaact aaaggagaat
      361 acgagccttg gtggtttttc gaggaatggg aaacttccat tcaagccgac tttgcttttt
      421 cagataagga agctgccttt ctgaagtatc aagagttagc agacgagtta ctacggaatt
      481 atcctaatca tcaaacaaaa aaagattgtt tgttagcagc ttggaatgaa gaagaagttg
      541 agtactgcga ggactgtgaa gatgatattc aaacatttca cgggcttatt ttattttctg
      601 atggggaagt gtatcaacca actcccgaag aaaaagagac gatttttaaa cctgttttaa
      661 cctttgcttg aggcgaaaag aaatttggag gattaacaca tgcagaagaa cgatgactta
      721 ttaagagaac gtcgaaaaga cgaacacgtg gctcttggag taaaacagaa tgagcagtta
      781 gcgccatcga gtttagaaga tattcaactg attggaactt ctatcccgcg ctataatgtg
      841 aaagatatcg atttaaccac aactattgtg gggaccaatg tgcctttccc attgtatatt
      901 aatgcgatga caggtggaag tcggcatacg aaaaaaatta atgccgaact tgctgaaata
      961 gcacgcgaag tagctatccc aatggctgtt ggttcccagt ctgcagctct aaaaaatagt
     1021 tcgctaatag atacctataa aattgtcaga gaaatcaatc cgaatgggat gattttagca
     1081 aatattagtc cagaagtagc ccttcaagag ggacttcggg cgatcgaaat gttagaggca
     1141 aatgcacttc aaattcatat taacccggca caagaattag ttatgcaaga aggcgaccgt
     1201 tcttttagtc attggctaac tagaatagaa gagtacgtca agctttcgcc agttccagta
     1261 gttgtaaaag aagttggctt tggaatgacg cgtgaaacag taaaaacgct agctgatatc
     1321 ggcgttcaaa ccgtagattt agctggaaaa ggcggaacaa actttgccca aattgaaaat
     1381 gatcgccgcc gtgatcaagc atatgatttc ttacttgatt ggggtatttc caccggacag
     1441 gctttaatag acatgcaaca ccaagatgcg ccaaagattg cttatttagc gtcaggtggt
     1501 attaggaacc cgttagatat cgttaaagca ttagcgctcg gagcagatag tgtaggtatg
     1561 gcaggacaaa ttatttattc actaaaaaaa gagggcgtca ccaaaaccat tgaaaaactg
     1621 gagctatgga aagaacaact acgtggctta tttgttcttg caaatgcgaa aaacatctca
     1681 gaattaaaaa caacgccatt aatcataagt ggtgaacttg ctaaatgggg cgcattacga
     1741 gaaatcgatt tagtcaaact agctaataga aaataaaaac cagctgctat tcatttagca
     1801 aagctggttt tttatttatt gaaccatttc tggtaaagtt tcatcgattg cttgaaggcg
     1861 ttcagtgaat tcttctttag ataaattttt cgtataaaga tttgcgggat gaacgcggca
     1921 atcatgcgaa caactacgca aatatttttt ctcattttcg atagaagcta ggatttgctt
     1981 attgcaatac gggttagcac aattgatgta acgttcgcaa ggcgtgccgt caaagtaatc
     2041 tttcccaacg atagtagggt ttacttggtt aatcggaacc gcgattcttt catcaaaaac
     2101 gtacatttgg ccgtcccaaa gttccccttt ggtttcttcg tttttaccgt aagtcgcaat
     2161 cccgccgtga agttgactta catcatcaaa acccgctgtt tttaaccaac cagaaaattt
     2221 ctcacaacga ataccaccag tacagtaagt gacgattttt ttatcagcaa gttgctcgcg
     2281 attatcttca atccatcctg gtaactcacg gaaattttga atatctggac gaacagcgcc
     2341 gcggaaatga ccgatatcaa attcataatc atttctagcg tctaaaataa ccgtatcttc
     2401 atccaacaat gcttcacgaa actcagaagg ctctaaataa gtccctgtaa cttctaaagg
     2461 attaacatct tcttctaaac ttaaactaac aatttcagca cgaggccgta catgcatttt
     2521 cttaaaagca tgagcatcag ccgcgtcaat tttaaatacc atatcagcga agcgagcatc
     2581 gtttgccata taatccatat atttgtttgt tgcttctact gtacccgaaa cggtgccatt
     2641 aatcccctca gtagccacca aaattcggcc ttttaattcc atttctttgc aagcagcaag
     2701 atgctctttt gcaaaagttt ctggatcatc aatcgttgtg tatttgtaat ataacaacac
     2761 ttgatagtca ctcataatct tatcaccctt caaaatatat ttcatgtgta agaaaaattc
     2821 tccacaagtt tgcgcattaa tactatacta tagcaaattc agactggcaa gtaaccgaac
     2881 cgtaaaaaaa tgcttcttat agttaactat atgtacaagt acaaaacagc tatggtatac
     2941 ttattaaata tgaagcgaaa attttgttga tgaaagcaaa tcctgttttc attgcctaaa
     3001 ataaagaatg aagtaaggat tgggcgtgag ctatgtgcaa ataaatgaat cgtttatgga
     3061 agaactagct ttaaaaaaag taaaacaaga acgcaggaaa aggttgaagt ggtttgttta
     3121 taagttttta atgattacct ttggcgcaat tttgatgggg gttgggctgg aacttttcct
     3181 tgtaaacaac cgaattttag atggtggagt cgttggtatt tcgattatta tttcgcaact
     3241 aacgccgctg ccactagggg ttttaacttt tgtacttaat attccgtttt tcatcatagg
     3301 ttaccgaaaa atcggaaaag tatttgcgct gtttacattg tacggaattg cagtcatgtc
     3361 gattgtaacg ctcgttttac acgatatgga tccagtgaca gatgatttac tacttgcgac
     3421 tgtttttggc ggaatgacgc ttggtcttgg ggtgggtctt gttattcgta acggaggggc
     3481 gcttgatgga acagaaatca tttcaatcat tattaacggt cggacgccat tttcaacagg
     3541 acaaattatt atgtttatta atattgttat ttttatcgtt gctggacttg tgttcaactg
     3601 ggatcgagcg atgtattcct taattacgta tttcctagcg tataaagtaa ttgatattgt
     3661 tattcaaggt gtagatgaat cgaaaagtgc ttttattatc agccgctatt acgaggaaat
     3721 tggagcagaa attatggagc aacttggaaa aggtgttaca tacttagatg caactggcgg
     3781 gtattccggt gatgtaagaa aagtagtttt cgttatcgtc tcaagatttg aagaagtaaa
     3841 agtgaaagcc attctggatg aaatagatcc agatgccttc ttagctgtcg gaggaagtat
     3901 gtcggaagtc cgcggcggaa agctgatgaa cacgaaaaca ccgcacctat aacaaaacag
     3961 aaaccatata tctcctactt gggatatatg gttttttgac gaaaggaaac atttgtttgt
     4021 ataatagggc tatagtatga gcgacagaac ggatagatgt gctataataa aacaagcaaa
     4081 aaaggaatgg gtgggacttg aaatggcgac acaaaagaaa aaaacgagcg gacgtaaaaa
     4141 atcgtcaaca cgctcaaaaa agaaacaatc agcctctttt cgtttagaaa taacaggggt
     4201 tattttaata gcaataggag ttatcggact tttacaatta ggctttgtcg gtcgcggttt
     4261 ttttgctctg gctgaaatgt ttgttggtct tttaagctat gtattacttg cgggtagcgt
     4321 gatacttggt gggtacatgg tgattagaag aaaaatgcct cacttattta gcaaaagact
     4381 agtcggtatt tatcttattg ttttaggctt tttgacatat atacatatgt atttcattat
     4441 ccacaactta ggagcaaatg cctccgttat ttctagtact tggaaattag tattagaaaa
     4501 tttatttaga ccaaatcaag ttggttttgt tggtggggga atgattgggg cagtaattac
     4561 ctccgttacg tatttcttat tagatagatt aggaacgaat ttgatagctg ttctacttat
     4621 tatctatggt ttttcccttg tatcgggtat ttccatccgg caatttttct ccaaaattgc
     4681 cgaatttgtt cgttacttat ttgcaaaagg caaagttgcg accgaaaaag gcaaagaagt
     4741 gaaagcgaaa cgtgataaaa agaaagcaga gaaaatagtt gaggttgagc ctgatgaagt
     4801 actagatgta gtagaccccg cgcaagaaga aaaagcgccg ccaatcatct ctaactttag
     4861 ctccaaagta gaacaagaaa aagcaccagt cgaagaaaaa acaaccaaac aagagcaaga
     4921 tttagaaatg tttcagcaag aatcgttcga aaatgagatt tatcaattgc cccccgttga
     4981 tattttagca ccggctaaag taacggatca aagtaaagaa tatgaccaaa ttaaagtaaa
     5041 cgcaaaaaaa ttagaagata cctttgaaag cttcggagtg aaagcaaaaa tcacccaagt
     5101 tcatcttggc cctgcagtga caaaatatga agtacaacca tctgtcggtg ttaaagtgag
     5161 caagattgtt tcactcagtg atgatatagc acttgctcta gcagcaaaag atattcgaat
     5221 tgaagcgcca attccgggga aatctgctat tggaatcgaa gtagcgaacc aaaatgtagc
     5281 catggtttct ttacgtgaag tgttagaaaa caaccctaaa aacaatccag acgagaagct
     5341 tcaaatagca cttggtcgtg atatttctgg agaagcaatg atggcaagtc tcgataagat
     5401 gcctcattta ctcgtcgcag gagcaactgg tagcgggaaa tctgtgtgta ttaatggtat
     5461 tattacaagc attttactcc gtgccaaacc acatgaagtc aaaatgatga tgattgatcc
     5521 aaaaatggtt gagctaaatg tctataatgg cattccacac ttgctcgcac cagttgttac
     5581 caatcctaaa aaagcagccc aagcattgca aaaagtcgtt gcggaaatgg aacggcgcta
     5641 tgatttattt tcgcatacag gtactcgtaa tatgcaaggc tacaatgatt atgtaaaaaa
     5701 acataatgag ctgaacgaag aaaaacaacc tgaattgcct tttattgttg taattgtaga
     5761 tgagttagct gacttgatga tggtagcttc caatgacgta gaagatgcga ttactcgcct
     5821 tgctcaaatg gcacgtgctg cgggaataca tttaattatc gcaacacagc gtccatcagt
     5881 agatgttata accggcgtaa ttaaagcgaa tatcccgtct cgaattgctt ttgccgtttc
     5941 aagttccatt gattcaagaa cgattcttga tatgggcgga gcagagaagt tacttggacg
     6001 aggcgatatg ctgttacttc cagttggctc tagtaaacct acccgaattc aaggcgcttt
     6061 tttatcggat gcagaagtag aagatgtagt taattacgtt atttcgcaac aaaaagcaca
     6121 atatagcgaa gaaatgattc ctgatgatat tccagaagtc gaaggagaag taacggatga
     6181 attgtatcac gaagcagtgg agcttgttgt agaaatgcag acagcttccg tttcgatgtt
     6241 acaaagaaaa ttccgtattg gctataatcg tgcagctagg ttgattgatg aaatggaaca
     6301 aagaggtgta gttggacctc acgaaggaag taaaccaaga agagtaaatg tggaaattaa
     6361 tccagagcat gaataaaaaa aggttgcgat ttgtagtcgc aacccttttt tataaaagta
     6421 aatcttgctt ttgtgcttga atttcttttt tactagaagc atattttgtt tgagttcggt
     6481 caaggagttc gtcaaaaaat tggggtaact gctcctcact gagttcaatg ccttcagcag
     6541 tgatcccgcc ctttgtagca acgcgttcaa ttaagccact aaacgtgtaa tcttcttcta
     6601 ctaataattt agaagtccca gctaaagcaa aattaatcat ttgaaatact tccgcatctg
     6661 ataatgaaga tcttctaaga gcagcttcta caaattgctc gaaaatagca gcaattattc
     6721 caggagaaga gctagttaaa tcgctagcga tatccatatt ttcctctcgg atagtcatta
     6781 catgtccaaa atgctcaaat gtcgtttcta accaagaagt gttagcttga ttcactgtgt
     6841 cagcgtgcgc aatcaaagta gttccaacat taacagcagt tgtgagagaa gggattaatt
     6901 tacttacctg taaacccgga gtgatttcaa taatatctga agtactcaca ccagctgcaa
     6961 tagaaatcac atgacgatca ggtgtcaata ccgcagcaca atctttcata agtggtaaaa
     7021 ctgcgagagg taacttacaa acgaagctat gatctgcttt tgtgaaaatt tcggcttcgt
     7081 tatcagctag cttagcagtt ggatatttat tataaaattg gttgaaatgt tcgttttttg
     7141 aattggaata aaggatgagt tcttcgggag ttgcaacctc agtttctatt attttagtcg
     7201 caattaacga tgccatactt ccaaaaccaa taaaacctat ttttgccatt tccatcccgc
     7261 ctttcattat tcattttatt atgaagggaa taaaagagga ttgcaactaa acttgattgt
     7321 ttactttttc acgttaatgc gcttgtgcct aaggattgac aaaaaaacga atgattccga
     7381 cagaattaaa ttttctgaat tcatttgcat taaaaattta tgaagttggt tatttattta
     7441 ttttattttc catgttatat taagaacagt tagagaagac gttaaatgtt tttgtgcgtt
     7501 ttccgaaaaa gggaccatac ataatttttt aatacgcgcc tgaatgtttg ttttgacaga
     7561 aagctctgac taacattata tctctcggga ggggttttaa ggtgaaaaag cgtacatttg
     7621 ctttagcact atcaatgatt attgcttctg gcgttatcct aggtgcttgt ggttcgagta
     7681 gcgacgataa aaaaagtagc gatgataaga gcagtaaaga ttttacagta gcaatggtta
     7741 cagatactgg tggcgttgat gaccgttcgt ttaaccaatc agcatgggaa ggcttacaaa
     7801 aatttggtaa agctaacgac atggaaaaag gtacagatgg ttacaactac ttgcaatcag
     7861 cttctgaagc agactacaaa acaaacttaa acactgctgt tcgtagcgat tatgatttaa
     7921 tttatggaat tggttacaaa ctgaaagatg caattgaaga agtttctaaa caaaaaccta
     7981 aaaatcaatt cgctattgtt gatgacacaa ttgatgaccg tgataatgta gtaagtattg
     8041 gatttaaaga taacgatggt tcttatctag ttggtgtagt agctggctta acaacaaaaa
     8101 caaataaagt tggatttgtt ggtggagtaa aaggaactgt tatcgaccgt tttgaagctg
     8161 gtttcactgc tggtgtaaaa gctgttaatc ctaacgcaca aattgatgta caatatgcaa
     8221 acgatttcgc taaagcagac aaaggacaac aaatcgcttc ttccatgtat tcaagtggag
     8281 ttgacgtaat tttccatgct gctggtggta ctggtaacgg tgtctttgca gaagctaaaa
     8341 acctgaagaa aaaagatcct agccgtgctg tttgggtaat cggtgttgac cgtgaccaat
     8401 gggacgaagg aaaagttaca gcaaacgatg gcaaagatta caatgtaact cttacatctg
     8461 aaatcaaacg tgttgatatc gctgtagaag accttgcaac tcgtgctaaa gctggagatt
     8521 tcccaggcgg aactaaaatt gaatacggtc ttgataaaga tgctgtaggg ctttctgaac
     8581 atcaagataa tatttctaaa gacgttcttg ctaaagtaga agagtacaaa caaaaaatcg
     8641 ttgatgggga cattaaagtt ccagaaaaac cttgatttta tagttataaa aaatgagtaa
     8701 tatgaacgaa gtaaaacctt ttatgaaagt cggtatcaaa cgtaccggct ttcataaaaa
     8761 aataatttgt aagcgtttta atttgatagg taaaccc
//
LOCUS       DASEAA010000112         8760 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.112, whole genome shotgun sequence.
ACCESSION   DASEAA010000112 DASEAA010000000
VERSION     DASEAA010000112.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8760
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.112"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..225
                     /locus_tag="U0342_002052"
     CDS             <1..225
                     /locus_tag="U0342_002052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423395.1"
                     /translation="SAEERIVYALQYLCDKLEIESENGYQQIPKYINKIKMAKYGKIS
                     RKQLNEKIILLLDKEVLKEKKGRFYIKKSA"
     gene            complement(252..1472)
                     /locus_tag="U0342_002053"
     CDS             complement(252..1472)
                     /locus_tag="U0342_002053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chloride channel protein"
                     /protein_id="HEM2423396.1"
                     /translation="MKKVTLIFGIYTFILGIIVGIIAALFLAMVHFATTFLWDYLPNQ
                     FDFSWYYPLLIGLIGSFFVGMVQLKFGDYPRSMHDNVAEAKKTGRMEYRKVLFPTILS
                     AWIILTFGASVGPEAALIGIVGGATTWIIDHLKLSMAHKEELVSLSVGAIISSIFHAP
                     FSGLAEEIDESSQAKKIPKNSKLVLSLLISFSALGSFLWLKSFLKMPASIFAIRLPDM
                     GWSWWFILLFIPMIILGWLFSVYFQQLQVYIAKAASVIKNKMVAAVIGGLSIGLFGII
                     SSFMLFSGEHQLIELTTTVQNYSIPFLLIIGLLKPVLVAICLATGWNGGAIFPAIFTS
                     TIMGYIATFWMDGSTGFLITIFVTASCTKIIGKPVLTASILLFIFPLQFFPFILLTAF
                     IVNRNWLVNFKKTA"
     gene            complement(1584..2057)
                     /locus_tag="U0342_002054"
     CDS             complement(1584..2057)
                     /locus_tag="U0342_002054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="divergent PAP2 family protein"
                     /protein_id="HEM2423397.1"
                     /translation="MSIFTNTPLIASIIAIVFAQVVKVPIHILVYRKFNLGLMFSTGG
                     MPSSHSAAVTALMTTLAIEYGLDSPYFAIAVVFGIIVMFDATGVRRQAGEQAVVLNKL
                     VTDFQDFVEHAKGLAAPEQEEKTKHLKELLGHKPMEVFFGALTGIAIGFILEMFM"
     gene            2185..2556
                     /locus_tag="U0342_002055"
     CDS             2185..2556
                     /locus_tag="U0342_002055"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465908.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PaaI family thioesterase"
                     /protein_id="HEM2423398.1"
                     /translation="MGLQETIGIEIVSVEKGKAVVQLEVTEKVHQPFGYLHGGVSVVL
                     AEHAASIGAAKSIEPDEIVFGLEINANHLASKQEGLVTATAEAIHLGKSTQVWEIKIT
                     DETEKLICISRCTIAVKKKRK"
     gene            complement(2601..3194)
                     /locus_tag="U0342_002056"
     CDS             complement(2601..3194)
                     /locus_tag="U0342_002056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465907.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit G"
                     /protein_id="HEM2423399.1"
                     /translation="MNVIIEIIISIMILIGGLLSILAAIGVIRLPDVYTRTHAAGISN
                     TFGVSLLLFATVGYFFHSGEGFNARVLLAVLFIFLTTPVASHLINRAAYDTGVPLAIR
                     IRDQLRSVKKDDIKKKKNLIIRQEQIEKARQEREELEERMEWERREEKIDEREDQEEQ
                     EREREEQTIEEQSDDSEHEIIEQDESETESDDDKTEK"
     gene            complement(3178..3465)
                     /locus_tag="U0342_002057"
     CDS             complement(3178..3465)
                     /locus_tag="U0342_002057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit F1"
                     /protein_id="HEM2423400.1"
                     /translation="MIIQIALSIGLLLYSISTFLYLYRILKGPTTSDKVVALDSIGMN
                     LVAIVALLSMFYDTHAFLDVILLIALLAFIGTVSFAKFIEKGKVIDRERDN"
     gene            complement(3462..3941)
                     /locus_tag="U0342_002058"
     CDS             complement(3462..3941)
                     /locus_tag="U0342_002058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit E"
                     /protein_id="HEM2423401.1"
                     /translation="MAFQLILNIILACLWMFLESSFSFATFIIGFIIGIFLLFFMRRF
                     LGSRFYLFRLFALVKLVFRFLHDLIVSTVHVSRIVLKKDMNIRPGIFRYDTTLETDWE
                     VTMLALLITLTPGTLSIDISDDYKAIYVHSLHVPNIEEEIATIRKSYEGAIMEVFHG"
     gene            complement(3948..5432)
                     /locus_tag="U0342_002059"
     CDS             complement(3948..5432)
                     /locus_tag="U0342_002059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit D"
                     /protein_id="HEM2423402.1"
                     /translation="MNNIILMPILIPFLGAITLMLLPKKVIIQRVFALIFSGILVVAT
                     LGLVFYIRENGITTVNIGNWAAPFGITMVGDMLAVLLTATTSIVLFCVILYSFYTIGK
                     PREKFLYYPAILFMIVGVNGSFLTGDIFNMFVFFEVMLMASYVLLVIGGTQVQLKATI
                     KYLLINVVGSGFFVVAIALLYSMIGTLNMADISQKITDLNGANTGMISVVAVLFLFVF
                     GLKAGLFPLYFWLPGSYFAPPIPVLALFGGLLTKVGVYAIIRTYTLFFSSLTDFVVPL
                     LGILAIVTIVLGVIGAISYYDMKTIVIYNIMIAIGVILFSVSIMTRESMTGAVFYLIH
                     DMIIKAALFLIVGIVMAITGYSSVKKFSGLMSVKPSLGWIFFIATLGLAGIPPLSGFI
                     GKLLIVEGAFSAGQIVGGIIILLSSLFVLMSLIKVFTKGFWGEKKGVFNLQIPYKKML
                     VPVVILLAISIGYGVFSNAIYPFIEQAVDPLVDPSVYIHAVIKE"
     gene            complement(5425..5772)
                     /locus_tag="U0342_002060"
     CDS             complement(5425..5772)
                     /locus_tag="U0342_002060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit C"
                     /protein_id="HEM2423403.1"
                     /translation="MELLMSILIGLIFAAAVYLILSKSLLRIIIGTAVLSHGVNLLVL
                     TMGGLKKGRVPILGTPGAGTYNDPLPQALILTAIVISFGVTAFFLVLAYRAYQELDSE
                     SVSKTRGHEADDE"
     gene            complement(5772..6197)
                     /locus_tag="U0342_002061"
     CDS             complement(5772..6197)
                     /locus_tag="U0342_002061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na(+)/H(+) antiporter subunit B"
                     /protein_id="HEM2423404.1"
                     /translation="MMKTNDVLLRNVTKVVAFIIFLFSLHLFFAGHYNPGGGFVAGLT
                     TAGAITLTLLAYDTKTVASMLNINTIMLTGVGLVFALGTGMIGIFTGDPFLTHKFGHV
                     DLPILGDTALHTATLFDLGVYLVVVGVTLTIIQTIGESD"
     gene            complement(6181..8589)
                     /locus_tag="U0342_002062"
     CDS             complement(6181..8589)
                     /locus_tag="U0342_002062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Na+/H+ antiporter subunit A"
                     /protein_id="HEM2423405.1"
                     /translation="MSFLHLAIVLPFIVALLIPLFYRWTKQVHTGWLVLPIPVILFIY
                     FLTFIPKTMDGATIVSMPWIPRLGINFTVVVDGLSLLFALLITGIGSLVTFYSIYYLG
                     KKKERLSNFYTFLFIFMTAMLGVVLSDNLIVLYLFWELTSISSFLLIGYWYHRERSRY
                     GARKSMMITVFGGLMMLGGFILLHIMSDSFSIREIISNADVISNNSLFIPAMILILLG
                     AFTKSAQVPFHIWLPDAMEAPTPVSAYLHSATMVKAGIYIVARFTPLFASSGVWFWTV
                     SLVGITTLFWGSLNATKKNDLKAILAYSTISQLGLIMALLGVGAASLHFDTLSDDIYV
                     MAIVAAVFHLFNHATFKGSLFMMVGIVDHETGTRDIRRLGGLMRIMPITATIAFIGTF
                     AMAGIPPFNGFLSKEMFFESMVNITQLQLFDASTWGVLLPVVAWVASVFTFVYSMIIF
                     FKTFTGKVKPYLLPKKPHEAPFGLLLPPIILSIFVVGIGLFPNLIAEPILEPAVRAIV
                     PGLSTDFSIHISLWHGFTPALLMTFGVVAVGIVLFLTHKYWKPWITTKVPKALRIGKT
                     YDNGMYYLEQGSYRMTMFIMTGWLRTYLNYMLSAFILMMASVMIFTQALDFNFSSMTK
                     VTVVDFVLAAVILVTLVGIVFSKSRITSIILLGAMGYTISIFFVISRAPDLALTQLII
                     ETISVVLYLLVFYHLPQFSNIEEKPKWLSMKTFLSIGVGVIITLVSLSAYNTTFYDSI
                     SKYYVDNAYVEAAGRNIVNVILVDFRGFDTMFETAVLSIAAIGIYAMIKLRLTKRGKN
                     DENE"
BASE COUNT         3169 a         1888 c         1493 g         2210 t
ORIGIN      
        1 tccgcagaag aaagaatagt ctatgccctc cagtacctat gtgacaaatt agaaattgaa
       61 agtgaaaatg gctaccaaca aatacctaaa tatattaata agataaaaat ggcgaaatac
      121 ggcaaaatat ctcgcaaaca actaaacgaa aaaataatac ttctcctcga taaggaagta
      181 ttaaaagaaa aaaaaggaag attctatata aaaaaatcag cataaaaaaa ctaaggattt
      241 ctccttagtt tttatgctgt ttttttgaag ttaactaacc aatttctatt cactataaat
      301 gcagttaata aaataaatgg aaagaattga agtgggaata taaataataa aatagaggca
      361 gttagaactg gttttcctat gatttttgta caacttgcag taacaaaaat agtgattaag
      421 aaaccagtcg atccatccat ccaaaatgtt gctatgtaac ccataatcgt actagtgaaa
      481 atcgccggga aaattgcacc gccattccag ccagttgcta aacaaatagc gaccaaaaca
      541 ggttttaaca agccgataat aagtaaaaag ggaatcgaat aattttggac agttgttgtc
      601 aattcaatca gctgatgctc accagaaaat aacatgaagg aagaaattat cccaaataaa
      661 ccaatgctca aaccgccaat aaccgccgcg accattttat ttttaatgac agaagctgcc
      721 ttcgcgatat agacttgcaa ttgctggaaa taaacactaa agagccatcc aagaataatc
      781 atagggataa aaagtaaaat aaaccaccaa gaccaaccca tgtcaggtag ccgaatcgca
      841 aaaatactcg ctggcatttt taaaaaggat ttcagccaaa ggaaagatcc gagcgcgcta
      901 aaagaaataa gaagcgataa cactaattta gagtttttgg gaattttctt cgcttgacta
      961 ctttcatcaa tttcctcggc tagtccgcta aacggagcgt ggaaaatact ggaaataatc
     1021 gcgccgacac tcaaactaac aagttcttcc ttatgcgcca tagataattt taaatggtca
     1081 ataatccaag tcgtggcacc accaacaata ccaatcaaag cagcttccgg accaacgctc
     1141 gccccaaatg ttaaaataat ccaagcgcta agtatcgtag gaaacagaac tttgcgatat
     1201 tccatccgtc ctgttttctt cgcctcagca acattgtcat gcatcgaccg cggatagtca
     1261 ccaaatttca gctgaaccat tcctacaaaa aaactcccaa tcaaaccgat tagtagagga
     1321 taataccatg aaaaatcaaa ctgattagga agataatccc ataaaaaagt cgtggcaaaa
     1381 tgaaccattg ctaaaaataa agcggcaatt attcccacta tgattccgag gataaaagta
     1441 taaatgccaa aaataagtgt tacctttttc actgaaactc gccccttttg taaaatctgt
     1501 tgatatcatg attttccctc taacataaag ctgtaaacta acgacaaaca aaaaaagttg
     1561 actacaagga gtcaactttt catttacata aacatttcta aaatgaatcc aatcgcaatc
     1621 ccggtaagtg ctccgaagaa aacttccatc ggtttatggc caagtaattc ttttaaatgc
     1681 ttcgtttttt cttcttgttc aggtgccgcg agcccttttg catgttccac gaagtcttgg
     1741 aaatccgtta ctaatttgtt taaaacaact gcttgttcac cggcttgtct tctaacgcca
     1801 gtcgcatcga acatcacgat aataccaaat acaacagcaa tcgcgaaata aggtgaatcg
     1861 agcccgtatt caattgcgag tgttgtcatt agcgcagtaa ccgcagccga gtgagagcta
     1921 ggcataccac cagtggaaaa cattagtccg aggttaaact ttcggtatac taaaatatga
     1981 atcggaactt tgaccacttg ggcaaacaca atcgcaataa tagatgcaat taatggtgta
     2041 ttcgtaaata tcgacatcaa atctctcctg tcaaaaagtc tattcttatt ttaccacaat
     2101 gagcttatta aaaacctttt ctagagtttt tctaccaact cttatataat aaagtataaa
     2161 tcaaattcgg aaagaaggga acatatggga cttcaagaaa ctattggcat tgaaattgtt
     2221 tcagtagaaa aaggaaaagc cgttgttcaa ttagaagtga cagaaaaagt ccatcaaccg
     2281 tttggctatt tgcatggagg ggtttctgtt gttttagcgg aacatgcagc aagtattggt
     2341 gctgctaaat caatcgaacc cgatgaaatc gtctttggtt tagaaattaa tgccaatcac
     2401 ttggcatcaa aacaagaagg attagtaaca gcgactgcag aagcaatcca ccttggcaaa
     2461 agtacccaag tatgggaaat taaaatcact gacgaaacgg aaaaactaat ttgtattagc
     2521 agatgtacca tagcagtcaa aaagaaacga aaataaaaag catggcagag gtcaattgat
     2581 gaactcgcgc catgcttttt ttatttctcc gttttatcat cgtctgattc agtttcactt
     2641 tcatcctgct cgatgatttc atgctcggaa tcatccgact gttcttcaat cgtttgttcc
     2701 tcgcgttccc gttcttgttc ttcttgatct tcacgctcat cgattttttc ttcgcgtcgt
     2761 tcccattcca ttcgttcttc caattcttcc cgttcttgtc gtgctttttc aatttgttct
     2821 tgacggataa taagattttt ctttttctta atatcgtctt ttttcaccga acgcaattgg
     2881 tcacgaattc gaatagctag cggaacaccg gtatcataag cagcccggtt aataaggtga
     2941 gaagccactg gtgtagttaa gaaaataaac aatacggcca gaagtactcg agcattaaaa
     3001 ccttcgcctg agtggaaaaa gtaaccaacc gttgcaaaca gaagtaagct aacgccaaat
     3061 gtattactaa tcccggcagc atgcgttcta gtgtacacgt caggcaatct gataaccccg
     3121 attgcggcaa gaatactaag caaaccgcca attaaaatca taatagaaat aataatctca
     3181 attatcacgt tcacgatcaa tcaccttccc tttctcaata aatttggcaa aggaaaccgt
     3241 tccgataaat gcaagaagcg caataagtaa aataacatcc aaaaaggcat gcgtatcata
     3301 aaacatcgaa agtagcgcta caatggccac taagttcatt ccaatagaat ccagcgccac
     3361 cactttgtca gaagtagttg gtccttttaa aatacggtaa agatataaga aagttgaaat
     3421 cgaatagaga agtaaaccaa tggataaagc gatttgaata atcatccgtg gaacacctcc
     3481 ataatcgcgc cttcataaga cttacgaatt gttgcaattt cttcttcaat attagggacg
     3541 tgaagcgagt ggacatagat tgctttataa tcatccgaaa tatcaatcga aagtgtcccg
     3601 ggcgttaacg taatcagtag tgcgagcatc gtcacttccc agtctgtctc aagcgtcgta
     3661 tcatatctga aaatccccgg tcgaatgttc atgtctttct ttaaaacaat ccgacttaca
     3721 tgaactgtag aaacaattaa atcatgcaaa aagcggaaaa ccagtttgac aagggcgaat
     3781 aaccggaaaa ggtaaaatct tgatccaagg aaacgtcgca taaagaatag caagaaaatc
     3841 ccgatgataa agccaatgat aaatgttgca aaactaaatg atgactcaag aaacatccac
     3901 aaacaagcaa gtattatatt aagaataagt tgaaaagcca tcttttatca ctcctttatc
     3961 accgcatgga tataaacaga agggtcaaca agagggtcaa ccgcctgttc aataaacgga
     4021 taaattgcat tactaaacac accataacca atcgaaatcg caagtagaat aactactggc
     4081 acaagcattt ttttatacgg aatttgtaaa ttgaatacgc cttttttctc gccccagaag
     4141 ccttttgtaa agactttgat taaagacata aggacgaata agctggataa taagatgatg
     4201 attccgccaa ctatttgacc agcagagaaa gcaccttcca caatcaataa ttttccaatg
     4261 aagccgctaa gaggtggaat tcctgcaagg ccaagagtag caatgaagaa aatccaaccg
     4321 agcgaaggct tcacgctcat caacccactg aattttttta cactagaata accagtaatc
     4381 gccatcacaa tcccgacaat aaggaacagc gcggctttaa taatcatatc gtgaatcaag
     4441 taaaagacag caccagtcat tgattcgcgt gtcataatcg aaacgctaaa cagaataaca
     4501 ccaatcgcaa tcataatatt ataaatcaca atcgttttca tatcatagta actaattgcc
     4561 ccaataaccc caagaacaat cgtcacaatc gcgagaattc caagtagcgg aacaacaaaa
     4621 tctgttaacg aactgaaaaa tagtgtgtat gtccggataa ttgcataaac cccaactttt
     4681 gtcagaagtc caccgaacaa agcaagcacc ggaattggtg gagcaaagta agatcctggt
     4741 agccagaagt aaagcgggaa tagtcctgct tttagtccga atacaaacaa gaacagaacc
     4801 gcgacaacgc taatcattcc tgtatttgca ccatttaagt ccgtgatttt ttgcgaaata
     4861 tccgccatgt tgagcgttcc aatcatcgaa taaagtagcg caattgctac aacgaaaaat
     4921 ccggaaccaa ccacattaat caacaagtat ttaatcgtcg ctttgagctg aacttgagtc
     4981 ccaccaatga caagtagtac ataagacgcc atcaacataa cttcaaagaa tacgaacata
     5041 ttaaaaatat cgccagttaa aaacgaacca ttaaccccaa caatcataaa gagaatcgct
     5101 ggataataaa gaaatttctc tcgtggtttc ccaatcgtat aaaaagaata aagaatcacg
     5161 cagaataaaa caatactcgt cgttgccgta agcaagacag caagcatatc gccaaccatc
     5221 gtaatcccaa aaggagccgc ccagttacca atattcacag ttgtaatccc gttttctcga
     5281 atataaaata caagtccaag tgtcgctaca accaaaatac cactaaaaat aagggcgaat
     5341 acccgttgaa tgattacttt tttcggaagc aacattaacg taattgctcc aaggaaaggt
     5401 atcaaaatcg gcattaaaat tatattattc atcatcggct tcatgtcctc tcgtcttgga
     5461 tacactctcg ctatcaagct cctgatacgc tctataagca agaacaagga aaaaggcagt
     5521 tacaccaaag cttataacaa tcgcagtcaa aataagtgct tgtggaaggg gatcattata
     5581 cgttcccgct cccggtgtac caagaattgg cacgcgacct tttttcagtc cacccatcgt
     5641 aagtacaagc aaattgacac cgtggcttag gacagccgtt ccaataataa tccgtagcaa
     5701 acttttagag agaattaagt agacagcagc tgcaaaaatc aagccgatta atatagacat
     5761 taatagttcc atcagtcact ctccccaatc gtttgaatta tcgtaagtgt tacaccgaca
     5821 acaactaagt aaaccccaag gtcaaacaaa gtcgccgtgt gtaacgcagt atctcctaaa
     5881 atgggcaaat caacatgacc aaatttatgc gttaagaaag gatctcctgt aaaaatccca
     5941 atcatcccag taccaagggc gaatacaagc ccaaccccgg taagcataat cgtattgata
     6001 ttaagcatac tagccaccgt ttttgtatca taagcaagta gtgttaatgt aatagcacca
     6061 gccgttgtaa gcccggccac aaacccgcca ccaggattat aatgtcctgc aaagaataaa
     6121 tggagtgaga ataagaaaat aatgaaagca actactttcg ttacatttct cagtagaaca
     6181 tcattcgttt tcatcattct tacctcgttt cgtcagtcgt aatttaatca tcgcgtaaat
     6241 accaatcgcc gcaatcgaaa gcacagctgt ctcaaacatc gtatcaaaac cacggaagtc
     6301 aactaagata acatttacaa tatttcgtcc cgccgcttcc acataagcat tgtccacata
     6361 gtacttcgaa atcgaatcat aaaatgtcgt attatacgct gaaagagaga caagggtaat
     6421 aattacacca accccgatac tcaaaaatgt cttcattgat aaccatttcg gcttttcctc
     6481 aatattacta aactgaggaa gatgataaaa cacaagtaga taaagcacaa cggaaatagt
     6541 ttcaataata agctgtgtta aagcaagatc tggtgctcta gagataacaa agaaaatact
     6601 aatcgtgtat cccattgctc caagtaaaat aatcgaagta atccgcgatt tggaaaagac
     6661 aatcccaacc aacgtcacta aaatcactgc cgctaaaaca aaatcaacaa ctgtcacttt
     6721 cgtcatactt gagaaattga aatcaagtgc ttgtgtgaaa atcatgaccg aagccatcat
     6781 taaaataaaa gccgataaca tgtaattcaa gtaagtccga agccaaccag tcataataaa
     6841 cattgtcata cgatacgagc cttgttctaa ataatacatc ccattatcat acgttttccc
     6901 aattcgaagt gcttttggaa ccttagtcgt aatccaaggt ttccagtatt tatgtgtaag
     6961 aaacaagaca atccccactg caacaacacc gaacgtcatt aacagagcag gcgtaaagcc
     7021 gtgccacaaa ctaatatgaa tcgagaaatc cgtagaaagc ccaggaacaa ttgctcttac
     7081 agcaggctcc aaaatcggct ccgcaattaa attagggaag agaccaatac caaccacgaa
     7141 aatcgataaa ataatcggtg gtaaaagtag tccgaatggc gcttcatgcg gttttttcgg
     7201 aagtaagtac ggtttcactt ttccagtaaa tgttttaaag aaaataatca tactataaac
     7261 aaacgtaaac acactagcaa cccaagctac aacagggagc agaacgcccc aagtacttgc
     7321 atcaaacaat tgcaattgcg taatatttac catgctttca aaaaacatct ctttacttag
     7381 aaatccatta aacggtggaa taccggccat tgcgaaagtt ccgataaacg caatcgtcgc
     7441 cgtaatcggc ataattcgca ttaagccacc aagtcgccta atatcccgcg tccctgtttc
     7501 atgatcgaca atcccaacca tcataaacaa actaccttta aatgtcgcgt gattaaatag
     7561 atggaacaca gctgcgacaa tcgccatcac ataaatatca tcactaagcg tgtcaaagtg
     7621 aagggaggca gcaccgacac caagaagcgc cataatgaga ccaagctgac ttatcgtcga
     7681 ataagccaaa attgctttta aatcattttt cttcgtggca ttaagtgaac cccagaaaag
     7741 ggtcgtaatc ccaacgagtg ataccgtcca aaaccataca cccgaacttg caaatagtgg
     7801 cgtgaaccga gcgacaatat aaatcccagc ttttaccatc gtagcagagt ggaggtaggc
     7861 actgaccgga gtaggagctt ccatcgcatc tggcaaccaa atatggaatg gaacttgcgc
     7921 agatttcgta aatgccccaa gcaagataag aatcatcgca ggaatgaata aactattatt
     7981 actaattaca tccgcgttac taataatctc ccgaatggaa aaagaatcgc tcataatatg
     8041 aagcaaaata aatccgccaa gcatcatcag tccgccgaag actgtaatca tcatcgattt
     8101 acgagccccg taccgtgaac gctcacgatg ataccaatac ccaatcaata agaacgaact
     8161 aatggaagta agctcccaga aaagatacaa cacaatcaag ttatcactca agacaacccc
     8221 gagcattgcc gtcataaaaa taaataaaaa tgtatagaaa ttgctaagtc gttctttctt
     8281 tttccctaaa taataaatag agtaaaaggt aacgagtgaa ccaatccccg taataagtag
     8341 cgcaaacagc aaactaagcc catctactac taccgtaaaa ttaatcccaa gtcgcggaat
     8401 ccaaggcatt gaaacaatcg ttgccccgtc catcgttttt gggataaatg ttaagaagta
     8461 aataaacaaa atcactggaa ttggaagtac taaccagcca gtatgaactt gtttggtcca
     8521 ccggtaaaaa agtggaatta gcagtgccac aataaatggc agaacaattg ctagatgaag
     8581 aaatgacaaa atcggctcct cctcgaagaa tttttatacg gaaactcatc ctggaaatgt
     8641 gaaaataaaa acaggaaatc attatttttt aagcaagtac ttacatttaa tgaaacatag
     8701 ttataactaa aattttagaa aaccgtgcta actcatcaaa tttcaacaac tttactattc
//
LOCUS       DASEAA010000113         8682 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.113, whole genome shotgun sequence.
ACCESSION   DASEAA010000113 DASEAA010000000
VERSION     DASEAA010000113.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8682)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8682)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8682
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.113"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            191..2530
                     /locus_tag="U0342_002063"
     CDS             191..2530
                     /locus_tag="U0342_002063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase"
                     /protein_id="HEM2423406.1"
                     /translation="MRRVRISVRRLVEFVRRSGSIDNRMTNSDRALEGTKIHQLLQKE
                     AGEEYAAEVRLNLERIVDGIAFSLDGRADGIINSRMIDEIKTTETPMDEITEDFRPLH
                     WAQLICYGFMLAEKSDLAEVTLQLTYYQVVDKEVKQFQRVMSREELSVFVDDLLSQYA
                     IWAKASAAWEMKRNKTIQELTFPYDNYRSGQRELAIAVYRTISSEESLFCEAPTGIGK
                     TMSTLFPGIKAMGEGKTDKLFYFTAKTITRQVAEDALDEMRRKGLAARSVTITAKDKI
                     CFLDERKCEPDHCQFARGYYDRLNEALFDMLQSEEAITRQVVEGYARKYTLCPFELSL
                     DVALFCDVIVCDYNYLFDPVVYLKRFFAEGPGKYTFLVDEVHNLVDRARSMYSATLKK
                     STVMQVKRGLDSKKNKRLLNAINVMNKEMIVLNKKLKDLEKTTYVQKSELVDWNAAVL
                     KFTFVAKEWLPQNTQSELQVDVLDLYFESLRYTAIAEFYDERYVTQVTRNHRDLEIKQ
                     LCLDPAFLLSERLKLGSSSVLFSATLRPIDYYTNVLGGQEDTSRMIFSSPFKQKNMHL
                     LVADYISTKYQMRENSMEAVVDALYALVSGKNGNYIFFFPSFLYLQKVYDLFKEKYPN
                     IRLQKQETAMDEKQREHFLEDFHAENVETLIGFCVLGGVFSEGVDLRGNRLVGAAVVG
                     VGLAQLNHESDLIKDYYNETIGRGFDYAYQIPGMNKVLQAVGRVIRGESDRGVVLLIE
                     ERFSADRYRALFPTHWNHAKTVKSTDDISREVAGFWRNS"
     gene            2575..3387
                     /gene="yidA"
                     /locus_tag="U0342_002064"
     CDS             2575..3387
                     /gene="yidA"
                     /locus_tag="U0342_002064"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM2423407.1"
                     /translation="MYKIIAIDIDGTLLNDAHEITLAVRDSIKAAKAKGVKVVLCTGR
                     PLAGIKKSLIELDLLDEGDYAITFNGAVVLETASEKTLADITLNKTELEEIYAFCHAE
                     NVNVTYFDGKNMYVPSRKITEITCQDSLLLGTPLYHLPVEEAPESIHVSKVMLLDSPE
                     KITDVIKKLPESIKEKFYVVRSVPYNLEFLQKGVNKGSALASLAEKLGVSQSEVMSIG
                     DQENDITMIEYAGMGVAMGNATEHIKEIANYTTTTNNEDGVAQAIQMLILDR"
     gene            3672..5786
                     /locus_tag="U0342_002065"
     CDS             3672..5786
                     /locus_tag="U0342_002065"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HEM2423408.1"
                     /translation="MSKNGNFLKKVGLAFLSILIVASTIFQTTVVKAATSYGSQFLNT
                     VELLDKDGVPQTDFGYYDNMDVHYTWSIPNSTNVKAGDTMDFTLPSQLALATDLAFDV
                     KDSNGQVVGTATVKRATNQVTLVFSDYVEKHSDIKGELDFWTTFNQKVITGNETVDLE
                     FPLENGTTQIDVKVGEKTPVSPTETLFKYGWVDASNPSLIHWVIRVNYAKVNIPNAVF
                     TDIIGSKQTLNFDSIKAFHGTYSADRIFTAGAAISSTNFSATSDGFSVALGDLTDSVQ
                     ISYTTTATDGGKSTQYDNTAKLAGTDFVPKQTSTWTPASGGGGEGGGTTGSVTLTKED
                     AKTKATLEGAEFKLVDSKGTVLQENITTNASGQLSIADLKFDTYQLIETKAPTGYKLD
                     TTPVEFTIGENNQAITVTKENTLNTGSVELTKLDSATKATLAGATFELQDKEGNTLQT
                     GLTTDENGVLKVTDLVPGSYQFIETSAPTGYKLDNSPVSFEIIASETDQIVKVTKENT
                     LEVGSVELTKLDSATKATLAGATFELQNKEGNTLQTGLTTDENGVLNVTDLVPGTYQF
                     VETKAPIGYELDTTPVVFEIIAGETDQPVKVTKENTLVPPTPVPPTPVPPTPVPPTPV
                     PPTPIPPTPLPPVPYEPTVPPTKPAVPVTPKKSENSEDSPKTTQIRITKSLPKTGDTN
                     SFAGLGVILIALSLSGLLLKRK"
     gene            5977..7719
                     /locus_tag="U0342_002066"
     CDS             5977..7719
                     /locus_tag="U0342_002066"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463693.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="collagen binding domain-containing protein"
                     /protein_id="HEM2423409.1"
                     /translation="MKKRTTMTSNLKKFGLAFLSVILLVNVLFQTNFVKAATNYGSDF
                     LKTVELLDADGNPQTDFGYYDSIKVHYTWEIPNSTNVKEGDTMEFVLPPELKIVTDLD
                     FSLKDHDGNTVGHVIAKKSTGQVVITFTDFVEKNSNISGYLDFWTNWDKSLVEGNENV
                     PVEFPVNGTTETIDVGVGGKNQIDPDESLYKYGWANAEHPELIQWVVRVNYSKQNIQN
                     AVYEDFIGPKQVVDFNSIKAFHGEFDPDDNFTPGAEVPSSAITQTTEGFKVDLGNLTD
                     SVKISYYTTSTDNGASPNYTNKGQLTGDNFIKQEIEVATPTSGGGGGGEGTTGSVELT
                     KTDDSSQKNPLEGAEFKLVNGAGTIVQTGLKTNIDGKLTISNLKYDTYQLIETKAPQG
                     YVLDASPVEFTIDDAHQSLFLSKENSAIKGSVSLEKVDHDTQNLLADAEFELQDKDGN
                     TLQPNLKTDKMGKLTVTDLLPGEYQFVETKAPTGYILDATPVKFKISTEALNVTVTKE
                     NTKKPEIPKVPVPPKTPEQPDKPDKPEQPDKIISADSKRTTLPKTGDTPLVNGWGILL
                     VAISASGLIALRRK"
     gene            complement(7762..8598)
                     /locus_tag="U0342_002067"
     CDS             complement(7762..8598)
                     /locus_tag="U0342_002067"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463694.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="STAS domain-containing protein"
                     /protein_id="HEM2423410.1"
                     /translation="MNESNGSMELYLREHTEEIINKWLSKIYENENTYTSFVYSPRYK
                     DELRADSEQTADLIISYFAGKKAFFEKLDKWLDNMYARRMENEVPLPEVITTLDKLRR
                     EFVSAVGDFCIHNDEVSKCDFSSSLSMVNHGFDRINEAFSAMYYNDIVKHLEQQHRLI
                     EEISTPVISITDKLAILPLMGSVDRERAEKLSEITANKCVHLGVEQLCIDLSGITYFD
                     DALGEMLTNLVTMLKLLGVEAFISGIQPKMAQQINRVELNLSIPAYHSLKAVLQDQTR
                     TI"
BASE COUNT         3013 a         1566 c         1754 g         2349 t
ORIGIN      
        1 aaatgtttct aaaatgtgaa atatttaaat cattaaaagt ctttttttag tgaaaagtgc
       61 tgtatagtcg ctcttgtgcg cgagtttaga atgtcttatc ataaaagtcc aaaattagta
      121 ttttttattg aattgttacg aacgtaggtt ctgtgttata attcaactgg attgtaaagg
      181 aggactattg atgaggagag tgcgtatttc agttaggcgt ttagtagagt ttgtgcggag
      241 aagcggtagt attgataacc ggatgacaaa ttcagaccgc gccttagaag gaacaaaaat
      301 tcatcaatta ctccaaaaag aagctgggga agaatatgcc gcagaagtac ggctaaacct
      361 agaacgaata gtggacggaa ttgctttttc gcttgatgga cgcgcagatg gcatcataaa
      421 tagtcggatg attgatgaaa ttaaaacaac agagacgcca atggatgaaa ttaccgaaga
      481 ttttcgacct cttcactggg cgcaacttat ttgttatgga tttatgcttg cagaaaagtc
      541 cgatttggca gaagttactc tgcaattaac gtattatcaa gtagttgaca aagaagtaaa
      601 acaatttcaa cgtgtaatga gtcgcgagga actgagtgtt tttgtggacg atttactttc
      661 ccaatatgct atttgggcaa aggcatctgc cgcttgggaa atgaaacgaa ataaaacaat
      721 tcaagaatta acgtttccat acgacaacta tcgaagtggg caaagagagc tcgccattgc
      781 ggtgtaccga acaatatctt cagaagaaag tttgttttgt gaagcaccca caggtatcgg
      841 caaaacaatg tcgaccttgt ttcccggtat taaagctatg ggtgaaggga aaacggataa
      901 attattttac tttactgcaa aaacaatcac gcgacaagtt gccgaagatg cactagatga
      961 gatgcgtcgt aaaggactgg ctgcaaggag tgttacaata actgcgaagg ataagatatg
     1021 ttttttagac gagcggaaat gtgaaccaga tcattgccaa tttgcgcgtg gttattatga
     1081 tcgtttgaac gaagcgttgt ttgatatgtt gcaatccgaa gaagcgatta cccgtcaagt
     1141 tgttgagggt tatgcccgga aatacacact ttgtccattt gaattatcgc tggatgtggc
     1201 tcttttttgt gatgtaatag tttgtgatta taattattta ttcgacccag tagtttactt
     1261 aaaacgcttt tttgcagaag gaccgggaaa atatactttt cttgtagatg aagtgcataa
     1321 tttagtagac cgtgcgcgct cgatgtattc ggcgacatta aaaaaatcaa cagttatgca
     1381 agtcaaacgg ggactagatt caaaaaagaa caaacgattg ctaaatgcaa taaatgtgat
     1441 gaataaagaa atgattgtgc ttaacaaaaa actaaaggac ttagaaaaaa cgacttatgt
     1501 ccaaaaaagt gaactcgttg attggaatgc agctgtgtta aaattcacct ttgtagcgaa
     1561 ggaatggttg ccgcaaaata ctcagtcaga attacaagtg gatgtgttgg acctttattt
     1621 tgaaagttta agatatactg ccattgcgga gttttatgat gagcgttacg tcacacaagt
     1681 tacgagaaat cacagggatt tagaaataaa acaactatgt ttggatccgg cgttcttatt
     1741 atcagagagg ctaaaactcg gaagcagttc ggtgcttttt tcagcaacgc ttcgaccaat
     1801 agattactat acaaatgtac ttggtggtca agaagacact agtagaatga tcttttcttc
     1861 gccatttaaa caaaaaaaca tgcatttact agtagcggat tatattagta cgaaatacca
     1921 aatgcgtgaa aatagtatgg aagctgtcgt agatgctctc tatgctctcg tctctgggaa
     1981 aaacggcaac tatatatttt tctttccatc atttctatat ttacaaaagg tatatgattt
     2041 atttaaagaa aaatatccta acatcaggtt gcaaaaacaa gagactgcta tggatgaaaa
     2101 gcagcgagag cattttttag aagattttca tgcagagaat gtagaaacct tgattggctt
     2161 ttgcgtttta ggaggcgttt tttcagaagg ggtagatctt cgcgggaacc gattagtcgg
     2221 tgcggctgtc gttggtgtag gacttgcgca attgaatcac gaatctgatt taattaaaga
     2281 ttattataat gaaacgattg gtcggggatt tgattatgca tatcagatac caggaatgaa
     2341 taaggtgctt caagcagttg gccgggttat tcgaggagaa tcagatcgtg gcgtagtgtt
     2401 gttaatagaa gaacgatttt ctgccgatcg ttaccgagcg ttgttcccta cgcactggaa
     2461 tcatgcgaaa acagtgaaga gcacagacga tatctcccga gaagtggccg gattttggcg
     2521 gaatagctaa ttttctagta gaatagaagt aattagtcat tttgggagga aattatgtat
     2581 aaaattatcg cgatagatat tgatggcact ttattaaacg acgcacacga aatcacacta
     2641 gccgtgcgtg actctattaa agctgcgaaa gcaaaagggg taaaagtagt attatgtaca
     2701 ggccgtccac ttgcaggaat taaaaaaagc ttaattgaac tagatctttt agatgaaggg
     2761 gattacgcaa ttacgtttaa tggggcggtc gtgttagaaa cagcttcaga aaaaacatta
     2821 gcagatataa ccttaaataa aactgaacta gaagaaattt atgcattttg tcatgcggaa
     2881 aatgttaacg tcacttattt tgatgggaaa aacatgtatg taccaagccg aaaaatcaca
     2941 gaaatcactt gtcaagattc cctgctactt ggtacgccac tatatcattt acctgtagaa
     3001 gaagcgcctg aatctattca tgtttccaag gttatgctat tagactcacc tgaaaaaatt
     3061 accgatgtta taaaaaaatt accagagagt atcaaagaaa aattttacgt tgtccggagt
     3121 gttccttata acctagagtt cttgcaaaaa ggcgtaaata aaggatcagc gctcgctagt
     3181 ttagcagaaa aacttggggt gtctcaaagt gaagtcatga gtattggtga ccaagaaaat
     3241 gatattacca tgattgagta tgctggtatg ggagttgcaa tgggtaatgc gacagagcat
     3301 attaaagaaa tcgctaacta tacaacaact actaataatg aagatggtgt ggcacaggct
     3361 atacaaatgc tcattctgga ccgctaaaaa tagtgaatag tagtaaaaac agaatattgt
     3421 caaacagtgt aaatggagat ttaaaaagca tgcgagtcac tataaaaagc cgaaactttc
     3481 tataaaggag tttcggcttt tttgtttaat taagtacttt atgataaata gccctaaaaa
     3541 aagtcactaa aagttcataa agtgggtgtt ttaggagcag tacttccgaa aagtgatata
     3601 gcttggagtt actcaattgt catatgatat gtgataataa caaaacttca ttagtaaagg
     3661 atgaatttgt aatgagtaaa aacggaaact ttttaaaaaa agttgggtta gctttcttaa
     3721 gtattttaat cgtcgctagc acaatcttcc aaacaacagt tgtgaaagcg gcaacgagtt
     3781 atggttctca gtttttaaac acagtagaac tcttagacaa agacggtgtg ccgcaaacag
     3841 attttggcta ctatgacaat atggatgtgc actacacatg gtctattccg aattcaacaa
     3901 acgtaaaagc tggagacaca atggatttca cactgccaag ccaattggcg ctcgcaactg
     3961 atctcgcttt tgacgtgaaa gatagtaatg gtcaagtagt tggaacggcc actgtaaaaa
     4021 gggcaaccaa tcaagttacc ctcgttttca gtgattatgt agaaaaacat tccgatatta
     4081 aaggagaact ggatttctgg accactttta accaaaaagt aattactgga aatgaaacag
     4141 ttgatttaga atttcctctt gaaaatggaa cgacgcaaat agatgtaaaa gttggtgaga
     4201 aaaccccagt tagcccgaca gaaacgcttt tcaaatatgg ttgggtggat gctagtaatc
     4261 caagtctgat tcattgggtt attcgagtga actacgccaa agtgaacatt ccaaatgccg
     4321 ttttcacgga tatcatcggc tcaaaacaaa cattaaattt tgattctatc aaagcttttc
     4381 atggaactta ttccgcagat cggatattta cagcaggcgc ggctatttcc agcaccaatt
     4441 tttccgcaac aagtgacggg tttagtgtag cactaggaga tttaacggat tctgtgcaaa
     4501 tttcttatac aacaaccgca acagatggcg ggaagtctac ccagtacgat aataccgcta
     4561 aactagccgg aactgatttt gtacccaagc aaacgtccac ttggacacct gcatcaggcg
     4621 gaggcggtga aggcggcggg acaaccggtt cagtaacact cacgaaagaa gatgcgaaaa
     4681 caaaagcaac cctcgaaggt gcggaattca aattggtgga ttcaaaaggc actgtgctac
     4741 aagaaaacat tacaacaaat gcgagcggac aacttagcat tgctgatctg aaatttgaca
     4801 cctaccaatt aatagaaaca aaagccccga caggctacaa acttgataca acaccagttg
     4861 aatttactat tggtgaaaat aatcaagcaa ttaccgtgac aaaagaaaat acgcttaaca
     4921 caggctccgt ggaactaaca aagctagact cagcaaccaa agcaacccta gccggagcaa
     4981 cattcgaatt acaagataaa gaaggaaaca cattacaaac tggtttaact acagatgaaa
     5041 atggcgttct aaaagtaact gatttagtac ccggcagtta ccaatttatc gaaacaagtg
     5101 ctccaacagg ctacaagtta gacaacagtc cagtaagttt tgaaatcatc gcaagcgaga
     5161 cagatcaaat agtaaaagta acaaaagaaa acacactaga agttggctcc gtggaactaa
     5221 caaagctaga ctcagcaacc aaagcaaccc tagccggagc aacattcgaa ttacaaaata
     5281 aagaaggaaa cacattacaa actggtttaa ctacggatga aaatggcgtt ttaaacgtaa
     5341 ctgatttagt accaggaaca taccaatttg tcgaaacaaa agccccaatt ggatatgaac
     5401 ttgatacgac gccagttgtt tttgaaatca tcgctggtga gactgaccag ccggtaaaag
     5461 taacaaaaga aaacacatta gtaccgccaa caccagtgcc accaacacca gtgccaccaa
     5521 caccagtacc accaacacca gtgccaccaa caccaatacc gcctactccg ttaccaccag
     5581 taccatacga accaactgtg ccaccaacaa aaccagcagt accagttacg cctaagaaat
     5641 cagaaaacag cgaggatagt ccaaaaacga cccagataag aataactaaa agtcttccta
     5701 aaacaggaga tacaaatagt tttgctggct taggagtaat cctaatagcc ttgtcattaa
     5761 gtggtcttct gctgaaacga aaatagaaaa aacaggctta gataattatc taagcctgtt
     5821 ttaattaggt tgtttaagaa ttgcaattgt cacaaaatgt tcacaattag aaggcttttt
     5881 ttgtgaagga gaaccgattt ttagaaaaaa taatgtataa tcactatgaa ttagcaatat
     5941 attatgattg aaattaatta aaaaaggatg gtttttatga agaaacgcac gacaatgacg
     6001 tctaatctaa agaaattcgg attagccttt cttagcgtta tcttgcttgt aaacgtttta
     6061 tttcagacta actttgttaa agcagcaact aattatggct ccgatttttt gaaaactgtg
     6121 gaattattag acgcagatgg caatcctcaa acggacttcg gttattacga cagcatcaag
     6181 gttcactata cttgggaaat ccccaattca actaatgtga aggaaggcga cacaatggaa
     6241 tttgtgttac ctccagagct gaagatagtt acagatttag acttttcttt gaaagatcac
     6301 gatggcaaca cggtaggtca cgtgattgct aaaaaatcga ctgggcaagt agttattaca
     6361 tttacagact ttgttgaaaa aaattccaat attagtggat atctcgattt ttggactaat
     6421 tgggataaat cattagtaga aggaaatgaa aatgttccag ttgaatttcc agtaaatggt
     6481 accacagaaa caattgacgt gggcgttggt ggtaaaaatc aaattgaccc ggatgaaagt
     6541 ttatataaat acggctgggc taatgctgaa catcctgagc ttatccaatg ggtcgttcga
     6601 gttaactatt cgaaacaaaa cattcaaaat gccgtttatg aagattttat tggaccaaaa
     6661 caagtcgttg attttaattc tatcaaagca ttccacggtg aatttgatcc ggatgataac
     6721 ttcacgccag gagccgaggt accatcatcg gcaattactc aaacaacgga aggattcaaa
     6781 gtcgacctag gaaatttaac agattctgtc aaaatttcat actatacaac ttctaccgat
     6841 aacggagcat cacctaacta cacaaataaa gggcaattga caggagataa ctttatcaag
     6901 caagaaatcg aagtcgcgac accaacatca ggtggtggcg gaggtggaga agggacaacc
     6961 ggatctgttg aattaacgaa aacagatgat tcgtctcaaa aaaatccatt agaaggtgcc
     7021 gagtttaaat tagtcaacgg agcaggaacg atagtccaaa caggactaaa aactaatatc
     7081 gatggtaaac taactatttc aaatctgaaa tatgatacat accagctaat cgaaacaaaa
     7141 gctccacaag gatatgtgct tgatgcgtct ccagtagaat ttacaattga tgacgcgcac
     7201 caatcattat ttctatccaa agaaaactct gccatcaaag gatccgtttc actagaaaaa
     7261 gtcgatcacg acacacaaaa cctactagct gatgccgaat ttgaactaca agataaagat
     7321 ggcaacacac tacaaccaaa ccttaaaaca gacaaaatgg gcaaactaac ggtgacggat
     7381 ttacttccag gcgagtatca atttgtcgaa acaaaagcgc caacaggcta tattttagat
     7441 gctactccag tcaaatttaa aatcagcaca gaggcactaa acgtaaccgt aacaaaagag
     7501 aacacgaaaa aaccagaaat accaaaagta ccagtaccac caaaaacacc agaacaaccg
     7561 gataaaccgg ataaaccaga acaaccagat aaaataataa gcgcagatag caaacggacg
     7621 actttaccaa aaacagggga tacaccactt gttaatggtt ggggaatact gctcgtagcc
     7681 atttcagcga gtggattaat tgcacttaga agaaaataat caaaaaaccg taagcgataa
     7741 tacaatcgct tacggttttt cttatatagt tctagtttga tcttgtaaga cagcctttaa
     7801 cgaatgatag gcaggaatag ataagtttaa ttcaacacga ttaatttgtt gtgccatttt
     7861 tggttggatg ccagaaataa atgcctcgac accaagaagt ttaagcatcg tcactaagtt
     7921 ggtaagcatt tctccaagtg catcatcaaa ataagtaatt cctgataaat caatacacaa
     7981 ttgttccacg cctaagtgta cgcatttgtt tgccgtgatt tcggataact tttctgctct
     8041 ttcacggtcg acgctcccca tcaaaggaag gatcgctaat ttgtccgtga tagaaatgac
     8101 gggtgtgcta atttcttcta ttaaacgatg ttgttgttct aaatgtttga cgatatcatt
     8161 gtaatacatg gcggagaagg cttcgtttat ccggtcaaac ccgtgattaa ccatggacag
     8221 acttgatgag aaatcacatt tagacacttc atcattatga atacaaaaat caccaacagc
     8281 agaaacaaat tcacggcgta gtttatcaag ggtggtaata acttcaggta atggtacttc
     8341 attttccatg cgacgcgcgt acatgttatc cagccatttg tcgagtttct caaaaaatgc
     8401 ttttttacca gcgaaataag aaatgattaa gtccgctgtt tgttcactgt cagcgcgcag
     8461 ttcatctttg taacgcggcg agtaaacaaa actagtatac gtgttttcgt tttcataaat
     8521 tttggatagc cacttattaa taatttcttc ggtatgttct cttaaatata gctccatact
     8581 tccattcgat tcattcatac cagacaaccc ctttaagtct aagtataata actacttttc
     8641 tttattctat gctcaaaacg ttgtactgtc caattaaatt tt
//
LOCUS       DASEAA010000114         8613 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.114, whole genome shotgun sequence.
ACCESSION   DASEAA010000114 DASEAA010000000
VERSION     DASEAA010000114.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8613)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8613)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8613
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.114"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1705
                     /locus_tag="U0342_002068"
     CDS             <1..1705
                     /locus_tag="U0342_002068"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423411.1"
                     /translation="YRLLMIGVFILIFIASGISIIYPLLGGKVIDDVVYQNKTNLLIP
                     LLLIMIISTIIRTICRYTYQIMCERIGQNSLFRIREDLYKKLQSLDFDFFNNTRVGDI
                     MARMTGDTDAIRHFVSWVSYNILENVFLFSFAIIIMAAIDWKLTLALVIVTPLIAILT
                     MKMSSKAQPVFYEIRESFSRLNSMVEENISGNRVVKAFAREDFEMKKFHEHNEDFKKR
                     NLDSADVSRTYLPVLDSLAGMLVVITLIFGGYLVIKGQMTLGDLVAFNGFLWMLNGPM
                     RMSGWLINDVQRFIASSFKIQDMMATDAKIPIHAEKPAPSLQGHVEFKNVSFHFEDDP
                     NTDVLKNISLKASPGQTIAILGETGAGKSTLVNLICRFYDPTSGEILIDGVDARKWHV
                     RELRNHIATVMQDIFLFSDTIEGNIAFGAPDATMEDVRRMARIADADHFIETMPESYD
                     TIVGERGVGLSGGQKQRISLARALLKNPSILILDDTTSAVDMETEVKIQGELKKITEN
                     TTTFIIAHRISSVKEADEILILNHGEIIERGTHSSLLAEKGYYFDIYNKQLGTEANVN
                     G"
     gene            1698..3479
                     /locus_tag="U0342_002069"
     CDS             1698..3479
                     /locus_tag="U0342_002069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423412.1"
                     /translation="MARNKFDIDEELETAFSAAHLKRILVYVKPYQKSIYITLFVILL
                     ANVATMIGPYLTKIVIDDTIPNKNMTQLFWIAIIFIVSVVVTGLCMRYRIRSITLIGQ
                     DILKDMRTAIFGHLQKLPFSYFDSRPHGKILIRVVNYINMLSDLLSNGLINLISDILS
                     VIVTLGFMLMIDPVLTLYSLALIPVLFVIVMVIKTAQRKAYQVLSNKQSNMNAYIHES
                     IAGIKVTQSFSREEENFEIFTEVSNEYRRSWMKAVKIQFLLWPGVQNIAVMTTCLIYF
                     VGIKGYGVDVSTGTLIAFIGYVGNFWNPVINIGNFYNSLITATTYLERIFETMDVEPD
                     IKDVPNAKKMPPIVGNVDFKDVYFRYEEGVDILKGINFHVDAGESIALVGPTGAGKTT
                     IINLLSRFYNINSGEILVDGENVEEVTLRSLRSQMGVMLQDTFIFSGTIIENIRYGKL
                     DATEEEIIAAAKVVRAHDFISGLKDGYYTEVKERGSTLSAGQRQLISFARALLADPKI
                     LILDEATSSIDTQTEILLQEGLERLLEGRTSFIIAHRLSTIKNSSRIFYIDNGRIQEA
                     GSHEELMAQHGYYYNLYQSQFDMLQAL"
     gene            complement(3504..4406)
                     /locus_tag="U0342_002070"
     CDS             complement(3504..4406)
                     /locus_tag="U0342_002070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2423413.1"
                     /translation="MYFVYDIGGTFVKFALMENNGTVKMKDKFPTTAKSAEELVAQMV
                     EKWRPYSTEVKGIAVSCPGVVDTEKGVIYQGGSLLFMHEKNLAEMLARECHVPVVLQN
                     DAKSAALAELWLGVAKNVHSAAILTLGSGVGGGIIMDGKLQSGYHLMAGEVSFMETSF
                     DTKKLRGTFFGRTGSAVELIKRIASKKNLPNKKDGEQVFELINQGDEEANAIFDVYIY
                     ELTSQILNIQYLIDPEIIAIGGGISAQPVVVDRLNEAVAEIKDANPYHAAQPKIVTCH
                     FQNDANLYGALYNFFLQMDVQNKR"
     gene            complement(4509..6779)
                     /gene="chiB"
                     /locus_tag="U0342_002071"
     CDS             complement(4509..6779)
                     /gene="chiB"
                     /locus_tag="U0342_002071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chitinase ChiB"
                     /protein_id="HEM2423414.1"
                     /translation="MKKLFSITSVVLLVLSLVVVSIGAEPKRAKAAENVPQYRNVMYY
                     GDWSIWGGEGNFYPKDIPADQLTHLNFAFLDFNSNGDLVFTDKDAAVGAPVGQEGVQW
                     GGANAGVLNAIQDLRAQNPNLKIGVSVGGWSKSGDFSTVAADPTKRANFVKNVMKFVK
                     YTNMDFVDLDWEYPASVRDADLVDNKNDEGTPNAKPADKQNFITLLQDLRTALDKQGV
                     DINKKYELSVALPAAKSTLENGIDVANLFKVVDFANVMTYDLNGAWTPNSAHHTALYG
                     NPKDPNYDSGFSVDQTVKYLKEKGAVSNKIVVGAAFYTRGWNKVAAGTDTALPGLFQA
                     AEKTNKDADGSLTYGANNENPIKTGDGGRAGGVWAYRSIDALKAKTPTLKEYWDDTAK
                     APYLYSKETGEFYTYDNTRSIGYKAQYVKDNNLGGMISWMQSQDKTTTSTKRDELTKA
                     IKSGLFGTNAIPQNAITYANLNVVATVKPYSENGVGYEITITNNEKADETNEVLKSTE
                     LSFETVKLPKFYIPVKAGETLTAGDYKAGTVTTSGGNTVVDLASVYDAQQIPQGASYT
                     FRLKSSASSVDVANISKIDLTQRMVKSSVEFGKQTIFGGGTVVPDPSDTEAPTVPKAL
                     TSSNVTDKSATLTWTASTDNKAVAGYKVYRNGTEVGSVSGTTFTDSGLTAKTAYSYTV
                     KAYDAAGNFSAASSALTVTTLDAATPPATPAWDAAKTYNKGDRVSYKGKTYEAQWWTQ
                     GNEPGAEQWGPWLLIN"
     gene            complement(7070..7441)
                     /locus_tag="U0342_002072"
     CDS             complement(7070..7441)
                     /locus_tag="U0342_002072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423415.1"
                     /translation="MTIKITRKTGIGSGITPVKIRIENEEIVKLDNHQSHFFMPKMEK
                     TKVCVTNWFYGSQEAVLENNNDVIVRINRKALILNYSMFPFLFFGLLATSWESTVIAL
                     ILCLASFFYSRKHWFEFVKIK"
     gene            complement(7537..8169)
                     /locus_tag="U0342_002073"
     CDS             complement(7537..8169)
                     /locus_tag="U0342_002073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitroreductase family protein"
                     /protein_id="HEM2423416.1"
                     /translation="MTYVNNDFEDLMKNRRSIREYDETVKISQEEMKAILEDAVTAPS
                     SVNMQPWRFVVVESDAGKEKLSSLVRFNTRQNESSSAMILVFGDLENFENGEKIYGES
                     VERGLMPAEVKEQQMAKLSQYFASIPRTEAERVVLIDGGIVAMQLMLVARAHGYDTNP
                     IGGFERKEVAEAFNMDPERYVPVMIVSIGKAKNSGYQSYRLPITDVTTFA"
     gene            complement(8183..8473)
                     /locus_tag="U0342_002074"
     CDS             complement(8183..8473)
                     /locus_tag="U0342_002074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2423417.1"
                     /translation="MLHIEAQITVKKEQTEAFLQAAKEVIAASRAEAGNHGYELVQST
                     ENETVFYMLEKWADMEAIQQHNDSEHFKKFQKLAADFVAKELEISVLTPLAR"
BASE COUNT         2477 a         1863 c         1545 g         2728 t
ORIGIN      
        1 atatcgtcta cttatgattg gtgtatttat tttaattttt atcgcttcag gtattagtat
       61 tatttatccg ttacttggcg ggaaagtgat tgacgatgtt gtctatcaaa ataaaacgaa
      121 tttgcttatc ccgctacttt taatcatgat tatttcgaca attattcgaa ctatttgccg
      181 ttatacctat cagattatgt gcgaacgaat tgggcaaaat tcccttttcc gaattcgaga
      241 agatttatat aaaaagttgc aatcactcga ttttgatttt ttcaataata cgcgcgttgg
      301 ggatattatg gcgcggatga ctggtgatac ggatgcgatt cgtcattttg tttcgtgggt
      361 atcttacaac attttggaaa atgtattttt atttagtttt gcaattatca taatggccgc
      421 gattgactgg aaattaacgc ttgcgcttgt tatcgtaaca ccgcttattg ctattttaac
      481 gatgaaaatg tcgagtaaag cccaaccagt tttttatgaa attcgggaga gcttttcacg
      541 gctcaattcg atggtggaag agaatattag cgggaatcgc gtcgtaaaag cctttgcgcg
      601 agaagatttt gaaatgaaga aattccatga acacaatgag gatttcaaaa aacgtaatct
      661 agattctgcc gatgtttcca gaacctattt gccagtgctt gattcgctcg cgggcatgct
      721 cgttgtcatc acgcttattt tcggtggcta tttagtaatt aaaggccaaa tgacgctggg
      781 agatttagtt gccttcaatg gattcctatg gatgctaaac ggcccgatgc gcatgagtgg
      841 ctggctgatt aacgacgttc aacgctttat cgcttcttcg tttaaaattc aagacatgat
      901 ggcaactgac gctaaaatcc ccatccacgc tgaaaaacct gcgccatcac ttcaaggtca
      961 cgtcgagttt aaaaatgtca gttttcattt cgaggacgac ccaaacacgg acgtactcaa
     1021 aaatatttca ctaaaagctt ctccaggcca aacgattgct attctgggtg aaactggcgc
     1081 tggaaaatca acactcgtca acttaatttg ccgattttac gatccgactt ccggtgaaat
     1141 tttaattgat ggtgtcgatg cgcgaaaatg gcatgtgcgg gaacttagaa accatatcgc
     1201 cacggtgatg caagatattt tcctattttc tgatacgatt gaaggaaata ttgcatttgg
     1261 cgctccggat gcaacaatgg aagatgtccg gcgtatggcg cgaattgcag acgcggacca
     1321 cttcatcgaa accatgcctg aaagttatga cacgattgtt ggtgaacgcg gtgtcggact
     1381 ttctggcgga caaaagcagc ggatatcttt agctcgtgct cttttaaaaa atccatccat
     1441 tttgattttg gatgatacca cttccgctgt cgatatggaa accgaagtga aaatccaagg
     1501 tgaattaaag aaaatcacgg aaaatacgac cacatttatc attgcgcacc ggatttcttc
     1561 tgtaaaagaa gccgatgaaa ttttaatttt aaatcatggc gaaatcatcg aacgcggcac
     1621 acactctagt ttgctagcag aaaaaggtta ttattttgat atttacaata aacaacttgg
     1681 aacggaggcg aatgtgaatg gctagaaata aatttgatat tgacgaagaa ctggaaacag
     1741 ccttcagcgc cgcacattta aaacgtattc tcgtttacgt aaaaccctat caaaaatcca
     1801 tttatattac gctctttgtc atcttattag caaatgtagc aacaatgatt ggcccgtatt
     1861 taaccaaaat agtcatagat gatacgattc caaacaaaaa catgacacaa ctattctgga
     1921 ttgcgattat tttcatagtt tctgtcgttg taaccggact ttgtatgcga taccgcatta
     1981 ggtcgattac gcttattggg caagacattt taaaagatat gcggacagcg attttcggtc
     2041 atttgcaaaa gctgcctttc tcttattttg acagtcgccc gcatggtaaa attttgattc
     2101 gtgttgttaa ttacatcaat atgctcagtg atttattgtc caatgggctg ataaatctga
     2161 tttccgatat tttaagtgtc attgtaacgc ttggttttat gttgatgatt gatccagtgt
     2221 taacgttgta tagtttagcg cttatcccgg ttcttttcgt gattgttatg gtcattaaaa
     2281 ccgcgcaacg aaaagcttat caagttctaa gcaataaaca atccaacatg aacgcctata
     2341 tccatgagag catcgctggg ataaaagtaa cgcaaagctt ttcgcgagaa gaagagaatt
     2401 ttgagatttt caccgaggta agtaatgagt accgccgttc ttggatgaaa gcggtgaaaa
     2461 ttcaattctt gctttggcct ggggttcaaa atatcgccgt aatgacgact tgtttaattt
     2521 acttcgttgg aatcaaaggt tacggtgtgg acgtttctac cgggacactg attgctttca
     2581 tcggttatgt tgggaatttt tggaatcctg ttattaatat tggaaacttc tataattcgc
     2641 ttattaccgc aacgacttat ttggagcgaa ttttcgaaac gatggacgtt gagcccgata
     2701 ttaaagatgt cccaaatgcg aaaaaaatgc caccaatcgt tggaaatgtt gactttaaag
     2761 atgtttattt ccgttatgag gaaggtgtgg acattttaaa aggaattaat tttcatgtgg
     2821 atgcgggtga atcaattgcg ctcgttggtc cgactggcgc tggaaaaacg accatcataa
     2881 acttgctcag ccgtttttat aatataaatt ctggagaaat tttagttgat ggggaaaatg
     2941 tcgaagaagt cacgcttaga tcactcaggt cccaaatggg cgtgatgctc caagatacct
     3001 ttattttttc aggaacgatt attgaaaata ttcgctacgg gaagctagat gcaaccgaag
     3061 aagaaattat cgcggctgcc aaagtcgttc gtgctcatga tttcatttcc ggattaaaag
     3121 atggctacta taccgaagta aaagaacgag gtagcactct ttcggccggt cagcgacaac
     3181 tgatttcctt tgcccgtgct cttttagccg atccgaaaat cctcatcctt gatgaagcaa
     3241 cttcaagtat tgatacacaa acagaaatcc tactccaaga agggcttgag cgactgctgg
     3301 aaggccgaac atccttcatt atcgcgcaca gactttcgac aatcaaaaac agttcgcgca
     3361 tcttctacat tgataatggt cgcattcaag aagctggcag tcacgaagaa ctgatggcac
     3421 agcacggcta ctactataat ttatatcaat cacagtttga tatgttgcaa gctttataga
     3481 aaaaaggtaa ctagagattc tagttacctt ttattttgca catccatttg taaaaagaaa
     3541 ttatacaatg ctccgtacaa attcgcatca ttttggaaat gacaagtgac gattttcggt
     3601 tgtgcggcat gataaggatt agcatctttt atttctgcga cagcttcgtt tagtctatca
     3661 acaacaactg gttgagcgct aatgccacca ccaattgcaa taatttccgg atcaatcaaa
     3721 tactggatat ttaaaatttg agatgttaat tcataaatat acacatcaaa aatagcattc
     3781 gcttcttcat cgccttggtt aattaattcg aaaacctgct caccatcttt tttattgggt
     3841 aaattcttct ttgatgcaat gcgcttaatt aactccaccg ctgatccagt tcttccaaag
     3901 aatgtacctc gcaatttctt cgtatcaaaa gaagtctcca taaaactaac ttctcccgcc
     3961 atcaaatgat agccagattg taatttacca tccataataa ttccgccacc aacgccactt
     4021 ccaagcgtta aaatcgccgc gctatgtaca ttttttgcca cacctaacca aagttccgct
     4081 aaagccgcac tcttcgcatc attttgcaag acaacgggaa catgacattc acgcgctagc
     4141 atttcagcca aatttttctc atgcataaat aatagcgagc caccttggta aatcacgcct
     4201 ttttccgtat ctaccactcc cggacaactc acagctatgc ccttcacttc tgtactatag
     4261 gggcgccact tttcgaccat ttgagctaca agttcttctg cacttttggc agttgtaggg
     4321 aatttatctt tcattttcac cgtaccgtta ttttccatca acgcaaattt aacaaaagtt
     4381 ccaccaatat cgtatacaaa atacatcctt ctgcaccctc tcttgtcgct tttattcatt
     4441 gtaatacgtt tggtcacttt ttcaaataaa aacagagatt ctccgaaaag aatctctgtt
     4501 tttgtctatt aatttattaa caaccaagga ccccactgtt cagctcctgg ctcatttccc
     4561 tgagtccacc actgtgcttc atatgttttc cctttgtaag aaaccctatc tcccttattg
     4621 tacgttttgg cagcgtccca tgctggagtt gctggtggtg ttgccgcatc aagcgttgtc
     4681 acagttaagg ccgagcttgc tgctgagaaa ttcccagccg catcatatgc ttttactgta
     4741 taagaatacg ctgtttttgc agttaagcca ctatctgtaa aagtagttcc tgaaacagag
     4801 cccacttcgg tcccatttcg gtacacttta tatccagcca ctgctttatt gtccgttgaa
     4861 gctgtccacg ttagagtagc agatttatcg gttacattag aagatgtgag tgcttttggt
     4921 actgttggag cttctgtatc gcttggatca ggtacaacag ttcccccgcc aaaaatcgtt
     4981 tgtttaccaa attcgacact cgattttacc atccgttgtg ttaaatcaat tttagaaatg
     5041 ttagctacat ccacactaga tgcactcgat tttaaacgga acgtataaga tgcgccttgc
     5101 ggaatttgtt gcgcgtcgta tacagaagct aaatcaacta ctgtattgcc acctgaagta
     5161 gtaactgtac ccgctttata atcgccagca gttaacgttt cgcccgcttt tactggaata
     5221 taaaacttag gtaatttcac tgtttcaaac gatagctcag ttgatttcaa aacttcattg
     5281 gtttcgtccg ctttttcatt gtttgtaatt gtaatttcgt acccgacccc attttcgcta
     5341 taaggtttca ctgtcgctac cacatttaaa ttcgcataag taatcgcgtt ttgcgggata
     5401 gcgtttgtgc cgaataatcc tgatttaatc gcctttgtga gttcatcgcg cttagttgaa
     5461 gtcgttgttt tatcctgcga ctgcatccaa gaaatcatcc caccaagatt attatctttt
     5521 acatactgtg ccttatagcc aattgaacgc gtattgtcat atgtgtaaaa ctccccagtt
     5581 tccttactat aaagatacgg cgccttggca gtatcatccc aatattcttt caatgttggc
     5641 gttttagctt ttagcgcatc aatacttcta tacgcccaaa ctccgccagc acggccccca
     5701 tcgcctgttt taattgggtt ttcgttgttt gccccgtaag taagcgagcc atccgcatct
     5761 ttattcgttt tttcagcagc ttggaaaagc cctggcaatg ccgtatccgt tccagcagct
     5821 actttattcc agcctcgagt gtaaaatgct gccccaacaa caattttatt cgaaactgct
     5881 cccttttctt ttaagtattt aacggtttgg tcgacagaaa aaccactatc ataattcgga
     5941 tctttcggat tgccgtaaag cgctgtatga tgcgcactat tcggtgtcca agcaccattt
     6001 aagtcatacg tcatcacatt cgcaaaatcg actactttaa ataaattcgc tacatcaatc
     6061 ccattttcta aagtagattt tgcagctggt aaagcaaccg ataattcgta tttcttgtta
     6121 atatccacgc cttgtttatc caaagccgtt cttaaatctt gtaaaagtgt aataaagttt
     6181 tgcttatccg caggttttgc atttggtgtg ccttcatcgt ttttattatc aacaaggtca
     6241 gcgtcccgta ccgaagcagg atattcccag tccaaatcaa caaaatccat attagtatat
     6301 ttcacaaact tcatcacgtt tttcacaaag ttagcccgtt ttgttggatc cgctgcaact
     6361 gtcgagaaat ctcccgactt agaccagcct ccaactgaaa cccctatttt caaattcgga
     6421 ttttgagcgc gcaaatcttg aatcgcattc aaaacgcctg catttgctcc gccccattga
     6481 actccctctt gtccaacagg cgccccaaca gcagcatctt tatcagtaaa aactaaatcc
     6541 ccattactat taaaatccag aaaagcaaaa ttcaaatgtg ttaattgatc agctggaata
     6601 tctttcggat aaaagttccc ttctcctccc caaatcgacc aatcaccgta atacataaca
     6661 ttccgatact gtggtacatt ttcagccgct ttcgcccgtt ttggctctgc accaattgat
     6721 acaaccacta acgataaaac taacaacaca acagaagtaa tactaaaaag ctttttcatc
     6781 ttcttattca tctcttcacc ccgatttttg atttataaac ctcatttcgg tagttctaag
     6841 tttgtctctc tgtacccctt tttgtgtggt tgcccgaatg ttcttctctc taatttcctc
     6901 cctccaatta aagattcatt ccgagcatct gtatatcatg caattatcat gccaaaagaa
     6961 agcgctgtca ttctgcggtt taagacccct tcctaagata cacagatgga ataaaaactt
     7021 acacagataa aaaaagcatg agaacatatc ccacgctatc catgaattat tatttaattt
     7081 tcacaaattc aaaccaatgc tttcgcgaat aaaaaaagga tgccaaacaa agtattaacg
     7141 caatgactgt agactcccaa ctagtggcca aaagtccgaa aaaaagaaat ggaaacattg
     7201 aataatttaa tattagtgct ttacggttaa tccgcacaat aacatcatta ttattttcca
     7261 aaaccgcttc ctgactccca taaaaccaat tagtcacgca aacctttgtt ttctccatct
     7321 taggcataaa aaaatgagac tgatgattgt cgagttttac aatttcttca ttttcgattc
     7381 taattttcac cggagtaata ccgctgccaa ttccagtttt acgagttatt ttgatagtca
     7441 tagttgcttc tcctccttgg ctgtatgtta ttttaattat atcaagaaag gaacaaaaaa
     7501 agaacaagga aatatcagct atttccttgc cctcttttaa gcaaaagtcg taacatccgt
     7561 aattggtaat cgataagact ggtagccaga atttttagct ttaccgatag aaacaatcat
     7621 aaccggtaca taacgctctg gatccatatt gaaggcctca gcaacttcct tacgttcaaa
     7681 accaccaatt ggatttgtat cataaccatg cgcacgagca actaacatta attgcatcgc
     7741 tacaattccg ccgtcaataa gaactacacg ttctgcttct gtgcgcggaa tggatgcaaa
     7801 gtactggctt aatttagcca tttgttgttc tttcacttct gccggcatca agccgcgttc
     7861 aactgattct ccgtaaattt tttcaccgtt ttcaaaattc tctaagtcgc caaaaactag
     7921 gatcattgcg gaagaagatt cattttgacg tgtattaaag cgaactaacg agcttaattt
     7981 ttctttaccc gcatcacttt ccacgaccac aaaacgccat ggttgcatgt ttacagagga
     8041 aggagccgtt accgcgtcct ctagaatagc tttcatttct tcttggctaa ttttcaccgt
     8101 ttcatcgtat tctcgaatcg agcggcggtt tttcattaag tcttcaaaat cattatttac
     8161 ataagtcata ttatggtcct ccttatcgcg caagtggcgt taatactgaa atttcaagtt
     8221 ctttagcaac aaaatcagca gccaatttct ggaatttttt gaaatgctcg ctgtcgttgt
     8281 gttgttgaat ggcttccata tccgcccatt tttctaacat ataaaaaact gtttcgtttt
     8341 ctgttgattg tactaattca taaccatgat tcccagcttc tgctcttgat gcagcaataa
     8401 cttccttagc cgcctgcaaa aaagcttcgg tttgttcttt tttgaccgta atttgcgctt
     8461 caatatgcaa catttcccaa caacttcttt cagatttgat agttcgatta atttcgaact
     8521 atcataatat aacatagcag caagttccgc gcaattaaaa tgtaagttat gatatgatat
     8581 ttatatgaaa aagttaaatg agctctcaaa atc
//
LOCUS       DASEAA010000115         8494 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.115, whole genome shotgun sequence.
ACCESSION   DASEAA010000115 DASEAA010000000
VERSION     DASEAA010000115.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8494)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8494)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8494
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.115"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            151..1089
                     /locus_tag="U0342_002075"
     CDS             151..1089
                     /locus_tag="U0342_002075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423418.1"
                     /translation="MSGSGAFFPMSVKKFLEKGITSLSEEEKMSTLHYLENAYHQEPC
                     NEEIVHRLIQFYNQTDKTKKAQEIGQNFLTMNGYDKEILGELSVTFMKEDNMDTYFTL
                     VRHYMEEEKKEATEEIADNVIPFPKQFVPRRDIREFASWHTTEQLEFLQEARFLEIDS
                     FLPAFKAFLADDSFSPFVQSMIFELMQEKEINEDITVQKIDKHGIFNPSLVPMLADNK
                     FAEAIFAGLAEMLEHSNPSLLEQVIGIIQQHLFMLYPFELEPQEVDVWINAYYKWANA
                     MYGNYCVISDDVNHLAVEEAISIIEELEIRQQNYFI"
     gene            1204..2487
                     /locus_tag="U0342_002076"
     CDS             1204..2487
                     /locus_tag="U0342_002076"
                     /EC_number="5.2.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trigger factor"
                     /protein_id="HEM2423419.1"
                     /translation="MSVKWEKQEGNVGKLTFEIEQEKVKEGLDRAFVKVRKTLNVPGF
                     RKGKVPRQIFNQRFGEEALFQDALDILLPEVYSAAIDEAGIDPVDTPQVNIESMEKGE
                     TWVLTAEVTVKPEVKLGDYKGLEVEKRETELTTEELEAELKQLQERQAELVVKEDAPA
                     ENGDTVILDFEGFKDGVAFEGGQAENHSLELGSGQFIPGFEEKLVGLKAGDEADIELT
                     FPEEYHAEDLAGQPVVFKVKLHEIKTKEVPALDDELAKDIDEEVETLDELKEKISKRL
                     QEAKEESVAQAKQEEVIAKAVENAEVDIPHAMVHHEADHLMNHFAQDLQAQGLTPELY
                     YQFTGQTEEAMHAQMEKDAEKRVKMNLVLEAIAEAENIEPTEEAIDEEISTLAEKYGM
                     EKDAVRAALGDMSELKSDLKIRKAIDVLLDSAVEK"
     gene            2672..3931
                     /gene="clpX"
                     /locus_tag="U0342_002077"
     CDS             2672..3931
                     /gene="clpX"
                     /locus_tag="U0342_002077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent protease ATP-binding subunit ClpX"
                     /protein_id="HEM2423420.1"
                     /translation="MFKFNDEKGQLKCSFCGKTQDQVRKLVAGPGVYICDECIELCNE
                     IIEEELGISEFVDFGEVPKPQEIRHILSDYVIGQERAKKALAVAVYNHYKRINSNETK
                     EDEVELSKSNICLIGPTGSGKTLLAQTLARILNVPFAIADATSLTEAGYVGEDVENIL
                     LKLIQSADYDVEKAEKGIIYIDEIDKVARKSENPSITRDVSGEGVQQALLKILEGTVA
                     SVPPQGGRKHPHQELIQIDTGNILFIVGGAFDGIEQIVKNRMGEKVIGFGTDNAKLKD
                     DETYLSRVVPEDLLKFGLIPEFIGRLPVIATLEQLDEAALVSILTEPKNALVKQYKRM
                     LELDDVELEFEPTALIEIAKEAIERKTGARGLRSIIEQIMLEVMFEIPSRDDITKCII
                     TEKAARGEEEPQLQLEDGSIIPIKTSA"
     gene            4050..4616
                     /gene="sipX"
                     /locus_tag="U0342_002078"
     CDS             4050..4616
                     /gene="sipX"
                     /locus_tag="U0342_002078"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464794.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipX"
                     /protein_id="HEM2423421.1"
                     /translation="MKSENKFFSGAFGWIKIILIALILAFGIRYFLISPVTVNGKSMD
                     PTLHDGEHLFINKVSDPKRFDIIVFPAPDEENAEYIKRVIGLPGDKVEYKEDQLYING
                     KKYDEPYLDSEKEALKNGYLTTDAEGDPNFTMADIPNSDGSLTVPKGELFVLGDNRQV
                     SKDSRYIGFISQDTVLGKVISFGKSLER"
     gene            4651..5220
                     /gene="sipY"
                     /locus_tag="U0342_002079"
     CDS             4651..5220
                     /gene="sipY"
                     /locus_tag="U0342_002079"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464795.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipY"
                     /protein_id="HEM2423422.1"
                     /translation="MTDQYDKKPKKKSGAHQLLSWVLVIVAALAIALVIRNFVVAPVK
                     VEGTSMVPTYQDGDRIFIEKISKPDRFDIIVFDEPPMIGSGEHFIKRVIGLPGDKIAF
                     KNGELYLNGKRKVENYLPEGTLTLWNPDPTQKPYIADYTLEDMTGESTVPKGKLFVLG
                     DNRGGSSDSRVFGFIDDSMVNGTVIQFGK"
     gene            5322..5864
                     /gene="sipZ"
                     /locus_tag="U0342_002080"
     CDS             5322..5864
                     /gene="sipZ"
                     /locus_tag="U0342_002080"
                     /EC_number="3.4.21.89"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464796.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type I signal peptidase SipZ"
                     /protein_id="HEM2423423.1"
                     /translation="MKEKNLKRLWSWIWAAVLAVLIAVIIRFYLFVPILVDGISMMPT
                     LHSDDRVIINRFGNVDRFDVIVFRESDGKEYIKRVIGLPGDTVEYKEDQLYINGKKYN
                     EPYLDTYKEKLKDGYLTDDYSSKDQLDGGKIPKDTYFVLGDNRRASKDSRIIGPIPFS
                     KVLGTTPICYWPIEDAKLID"
     gene            5874..6737
                     /gene="ylqF"
                     /locus_tag="U0342_002081"
     CDS             5874..6737
                     /gene="ylqF"
                     /locus_tag="U0342_002081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464797.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YlqF"
                     /protein_id="HEM2423424.1"
                     /translation="MTIQWFPGHMAKARREVTEKLKLVDVIFELVDARIPLSSSNPML
                     EEIIHQKRRVIILNKADTADEKTTKEWIDYFAEKGLPAVAVNAQEGKGLFKIEQAAEK
                     LMAEKFDRLRSKGMKPRAIRAMILGIPNVGKSTLINRLAKKNIARTGNKPGVTKAQQW
                     IKVGKTLELLDTPGILWPKFEDQEIGYKLALTGAIKDDLLQMEEIAGYGLRFLEKHYP
                     DRLQNWLKVETVSEDPIETLAFIAEKRGLLDRYNDPDYSRAAETVVREIRQQKLGRMS
                     FDFPNWEDEVE"
     gene            6734..7519
                     /locus_tag="U0342_002082"
     CDS             6734..7519
                     /locus_tag="U0342_002082"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727519.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HII"
                     /protein_id="HEM2423425.1"
                     /translation="MSDSISVIREKLNQVTSEHDPFFRKCMQDERKGVEKLLETTRRK
                     WEKEAQLRNKLEEMKQYETDLFQQGYKYIAGVDEVGRGPLAGPVVAAAVILPADFSVV
                     GINDSKQLSEAKRDALFETIKKEAIAIGVGIIEHDVIDQVNIYEATKLAMREALDQLT
                     PEPDFVLIDAMPLRYTEAELSLIKGDTKSISIAAASIIAKVTRDRLMQMYDEKYPGYD
                     FANNMGYGTKKHLLGLDTIGICPIHRISFAPVKEAKLHFDSLK"
     gene            7653..>8494
                     /gene="dprA"
                     /locus_tag="U0342_002083"
     CDS             7653..>8494
                     /gene="dprA"
                     /locus_tag="U0342_002083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464799.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-protecting protein DprA"
                     /protein_id="HEM2423426.1"
                     /translation="MDFKQRHTWLKIASCKSISAKKRASIWQKLTEFDQYEMTTQTFA
                     ESFFPVDKLAQILMELETAEACFFDDVTLIWILDDAYPALLREIYEAPPILFCKGNID
                     LLQQQAIAIVGTRQMSEYGRKACMKIASELAENKLTIVSGMAIGIDSTAHRATLNKQG
                     TTIAVLGSGVNKVYPKKNELLAKEIVKEGLLLSEYLPDEEAKRWHFPERNRIISGLAI
                     GTVIIEAAERSGSLITADIALEQNRQVFAVPGNIFIDTWQGTNYLIQEGAKLVMNSNN
                     IIEE"
BASE COUNT         2985 a         1320 c         1785 g         2404 t
ORIGIN      
        1 accataaaag cctcttgaca gaaccagact atacaagtag aatgaatcaa accaaatcaa
       61 catttttgct agaaatggtt agatttttaa caataagggt aaatccagtt agtataaata
      121 aagctttttc aactaaaagg agataaaacg atgagtggaa gtggtgcttt ttttccaatg
      181 agtgttaaaa aatttctgga aaaagggatt acctcgttgt ccgaagaaga aaaaatgagt
      241 acgctacatt atttggagaa tgcgtatcat caagagcctt gcaacgagga aattgtacat
      301 agattaattc aattttataa tcagacagat aaaacgaaga aagcgcaaga aattggacaa
      361 aactttttga cgatgaatgg ctatgataag gaaattcttg gagagctatc tgtaacattt
      421 atgaaagaag ataatatgga tacgtacttc acattagtta ggcattatat ggaagaagaa
      481 aaaaaagaag caacggaaga aatagctgac aatgttattc cttttcccaa acagtttgtc
      541 ccaagaagag acattcgtga atttgcgtct tggcatacga cggaacaatt ggagttttta
      601 caagaagctc gtttcttaga aatagattca tttttgccag cttttaaagc ttttctagcg
      661 gatgatagtt tttccccgtt tgttcagtcg atgattttcg aattaatgca agaaaaagaa
      721 ataaatgaag atattacagt tcaaaaaata gataagcacg gtatttttaa tccaagtctt
      781 gtgccaatgc ttgctgataa caaatttgcg gaagctattt ttgctggact cgctgagatg
      841 ctcgaacata gtaatccaag tcttttagag caagtgattg gtattattca gcaacatcta
      901 tttatgcttt atccatttga attagagcct caagaagtag atgtttggat aaacgcatac
      961 tataaatggg cgaatgcaat gtacggtaat tattgtgtta tttcggatga tgtgaatcac
     1021 ttagcagtag aagaagctat ttccattatt gaagagttag aaattaggca gcaaaattat
     1081 tttatataat gatatttctt gttttcaagt cagggatatc tgtgttatta ttagtgagta
     1141 tggctgaaac ttgtcatgag agtaattaaa ttgaactaaa tagatgatgg agggaattat
     1201 accatgtcag taaaatggga aaaacaagaa ggtaatgttg gaaaacttac ttttgaaatt
     1261 gaacaagaaa aagtaaaaga aggtttagat agagctttcg taaaagtgcg taaaactctt
     1321 aatgtgcctg gcttccgtaa agggaaagtt ccacgtcaaa ttttcaatca acgttttggt
     1381 gaagaagctc ttttccaaga tgcgcttgat atcttgcttc cagaagtata ttctgcagca
     1441 attgacgaag ctggtattga tccagtggat actcctcaag taaacattga gtctatggaa
     1501 aaaggcgaaa cttgggtttt aacagcagaa gttactgtaa aacctgaagt gaaacttgga
     1561 gattacaaag gtcttgaagt agaaaaacgt gaaacagaac ttacaacaga agaattagaa
     1621 gcggaattaa aacaattaca agagcgtcaa gctgaattag ttgttaaaga agatgcacca
     1681 gctgaaaacg gtgacactgt tatccttgat tttgaaggat ttaaagacgg cgtagctttc
     1741 gaaggtggac aagctgaaaa tcattctcta gaacttggaa gcggacaatt cattcctggt
     1801 tttgaagaaa aattagttgg cttaaaagct ggcgacgaag cggatatcga gctaactttc
     1861 ccggaagaat atcatgcgga agatttagct ggacaacctg tagttttcaa agtgaaatta
     1921 cacgaaatca aaacaaaaga agttccagct cttgacgatg agcttgcaaa agacatcgac
     1981 gaagaagtag aaactttaga tgaattaaaa gaaaaaatct ctaaacgttt acaagaagca
     2041 aaagaagaat ctgttgctca agctaaacaa gaagaagtta ttgcgaaagc tgttgaaaat
     2101 gcagaagtgg acattccaca cgcaatggtt caccatgaag ctgatcattt aatgaatcac
     2161 tttgcacaag atttacaagc acaaggtcta actcctgaat tatattacca attcactggc
     2221 caaacagaag aagctatgca cgcacaaatg gaaaaagacg ctgaaaaacg cgtgaaaatg
     2281 aacttagtgc ttgaagcaat tgcggaagct gaaaacattg agccaacgga agaagctatt
     2341 gacgaagaaa tttctacatt agctgaaaaa tatggtatgg aaaaagacgc agttcgtgct
     2401 gcacttggcg atatgagcga acttaaatct gatcttaaaa tccgcaaagc tatcgacgtt
     2461 ttattagata gtgcagtgga aaaataagct acgactgatt taataatttc attaaaaaat
     2521 ggggggcatg agttatactc gtgtccttct gaatgtagaa atatgaatac agatgattgg
     2581 catttctaat aaacaaatga tattattaac acacatagga gatgaaaaaa tcgcctataa
     2641 gcaacatacc tatgcgaagg ggtgaaatat tttgtttaaa tttaacgacg aaaaaggcca
     2701 acttaaatgc tccttttgcg gaaagactca agatcaagta cgtaaattag tggccggtcc
     2761 aggtgtttat atttgtgatg aatgtatcga gctttgtaat gaaattattg aagaagagct
     2821 aggtatttct gaatttgttg attttggtga agtaccaaaa cctcaagaaa tccgtcatat
     2881 attaagtgac tatgttattg gtcaagaacg tgctaaaaaa gcacttgctg tagcagttta
     2941 caatcactac aaacgtatta attccaatga aacgaaagaa gatgaagtag aactttcgaa
     3001 aagtaacatt tgtctaattg gtccaactgg tagtggtaaa acacttcttg ctcaaacatt
     3061 agcgcgaatt ctcaatgttc catttgctat tgcagatgcg acttcactta cagaagctgg
     3121 ttacgttggg gaagatgtag aaaatattct tcttaaactg attcaatcag cagattacga
     3181 tgtggaaaaa gccgaaaaag gtattatcta tattgacgaa attgacaaag ttgctcgcaa
     3241 atccgaaaac ccatctatta ctagagacgt ttccggtgaa ggcgtacaac aagcgctact
     3301 gaaaattttg gaaggtactg tcgcaagcgt tcctcctcaa ggcggtagaa aacatcctca
     3361 tcaagagtta attcaaattg atacaggaaa tattctattt atcgttggtg gagcttttga
     3421 tggaatcgaa caaatcgtta aaaatcgaat gggtgaaaaa gtcattggct ttggcacaga
     3481 taatgcgaaa ctaaaagatg atgaaactta tttatctcgc gttgttccag aagatttact
     3541 gaaattcggt ttaattcctg aatttatcgg ccgtttaccg gttatagcaa cgcttgaaca
     3601 attagatgaa gctgcgcttg tttccatttt gacagaaccg aagaatgctt tagtaaaaca
     3661 atacaaacgt atgttagagc ttgatgatgt agaacttgaa ttcgaaccaa ctgctctaat
     3721 tgaaattgcg aaagaagcga ttgaacgcaa aaccggagcg cgtggtcttc gttcgattat
     3781 cgaacagatt atgcttgaag tgatgttcga aattccttct cgtgatgaca ttacgaagtg
     3841 tataattact gaaaaagcag ctcgtggtga agaagaaccg caactgcaat tagaagatgg
     3901 ttctattatt ccaattaaaa catctgcatg attagaatgc gcgtcgtaat tggcgcgcat
     3961 tttttctatc aaaccagctt gttttactgt aatatctgac ttgtttcgtg ctatacttta
     4021 ttaatattaa ttggagagga taaaaagaca tgaaaagtga aaacaaattt ttttctgggg
     4081 catttggatg gataaaaata attctcatcg cgcttatact tgcttttggt attcgctatt
     4141 ttttaatttc tccagttact gttaatggga aatcaatgga cccaacactt catgatgggg
     4201 aacatttatt tattaacaag gtatcagatc cgaagcgttt tgacattatt gtatttcctg
     4261 cgcctgatga ggaaaatgca gagtacatta aacgcgtcat tggccttcca ggagataaag
     4321 tggagtacaa agaagatcaa ctttatatta atggaaaaaa atatgatgaa ccttatttag
     4381 attcagaaaa agaagctcta aaaaacggtt atttaaccac tgatgcagaa ggcgatccta
     4441 attttacgat ggcagacatt ccaaactctg acggctctct cactgtccct aaaggagaac
     4501 tttttgtttt aggagataat cgtcaagtaa gtaaagatag tcgctacatt ggctttatat
     4561 cacaggatac cgtgcttgga aaagtaattt catttggaaa atccttagaa cgttaatgtg
     4621 accctacagg aagtctagga ggagacatag atgacagatc aatatgacaa aaagcccaag
     4681 aaaaaaagcg gggcgcacca attattaagc tgggtgctag ttatcgttgc agcgcttgca
     4741 attgcacttg tgattcgtaa ctttgtagtt gcaccagtaa aagtagaagg aacatctatg
     4801 gttccaacat atcaagatgg cgatagaatt ttcattgaaa aaatttccaa gcctgatcgt
     4861 ttcgacatta ttgtgtttga tgaacctcca atgattggtt caggagagca tttcatcaag
     4921 cgagtgattg gtttgccggg agataaaata gcatttaaaa acggtgaatt atatttaaat
     4981 ggaaaacgaa aagtagaaaa ttacttgcca gaaggaacat taaccctttg gaatccagat
     5041 ccaacgcaaa aaccatacat agcggattat acgctggagg atatgacagg cgaaagtact
     5101 gttccgaaag ggaaactatt tgtacttgga gataatcgcg gcgggagttc agatagtcgc
     5161 gttttcggat ttattgatga ttccatggta aacggtacag tgatacaatt tggaaaataa
     5221 tgtgaagtcc gtgaagatac tttttcgcgg atttctctat taaatgagcg ttttttcgtt
     5281 tataataaga ctgttagtat aaaatagggc ggtgcgattt tttgaaggag aagaatttaa
     5341 aacggttatg gtcatggatt tgggcggctg ttctagcagt gttaatagct gttataatcc
     5401 gtttttattt atttgtccct attctcgtcg atgggatatc aatgatgcct acacttcata
     5461 gcgatgaccg tgtaattata aatcgcttcg gaaatgtaga tcgtttcgat gtgattgttt
     5521 tccgagaatc agatggaaaa gaatacatca agcgagtgat cggtttgccg ggtgatacag
     5581 tagaatacaa agaagaccaa ctttacatca atggtaaaaa gtataatgaa ccatatttgg
     5641 atacttacaa agaaaagtta aaagatggct atttaacaga tgattacagt tcgaaagatc
     5701 aactagatgg tggcaaaatt ccaaaagata cttattttgt tttaggtgac aatcgaagag
     5761 caagcaaaga cagtcggata attgggccaa ttccatttag caaggtgtta ggaacaacac
     5821 cgatttgtta ctggccgatt gaagatgcca aacttataga ttaggagtat ataatgacaa
     5881 ttcagtggtt tccaggtcat atggccaaag ctcgccgtga ggtaacagaa aaattaaaac
     5941 tagtagatgt gatttttgaa ttggtagatg cgcgtatccc gctctcttcc tctaatccca
     6001 tgctagaaga aattatccac caaaaaagac gagtgattat tttaaataaa gcagatactg
     6061 ccgatgaaaa aacaacaaaa gaatggattg actactttgc tgagaaaggc ttgccagcag
     6121 ttgctgtgaa tgctcaagaa ggtaaaggac tattcaaaat agaacaagcc gccgaaaaat
     6181 taatggctga aaaattcgac cgtttaagaa gtaaaggtat gaagccaaga gcaattcgtg
     6241 cgatgatttt aggtattccg aatgttggta aatcaacatt aatcaatcga ctagcgaaaa
     6301 aaaatattgc acggacaggt aataaacctg gtgtaactaa agcacagcaa tggattaaag
     6361 tgggaaaaac attagaactt ctggatacac cagggattct ttggcctaaa tttgaagatc
     6421 aagaaattgg ctacaaatta gctcttactg gtgcaattaa agatgattta ctacaaatgg
     6481 aagaaatcgc tggttacggt ttgcgctttt tagaaaaaca ttatcccgac agacttcaaa
     6541 actggctgaa agtagagaca gtctctgaag atcctatcga aacacttgct tttattgctg
     6601 aaaaaagagg gcttctagat cgatacaatg atccagatta ttctcgcgca gccgaaacgg
     6661 tagttcgaga aattcgtcag caaaagttag ggagaatgtc gtttgatttc ccaaattggg
     6721 aagatgaagt cgaatgagcg attccatatc cgttatccga gaaaaactaa accaagtcac
     6781 atcagaacat gatccctttt ttcggaaatg catgcaagat gagcgtaaag gtgtagaaaa
     6841 acttctggaa actacaagga gaaaatggga aaaagaagcg caattacgga acaagcttga
     6901 agaaatgaaa caatatgaaa cagatttatt ccaacaagga tacaagtata tcgctggagt
     6961 ggatgaagtg ggacgtgggc ctctcgcagg accagttgta gcagcagccg tcattttacc
     7021 agctgatttt tctgttgtcg gaataaatga ttctaaacaa ttgagtgaag caaaacgtga
     7081 tgctttgttt gaaacgataa aaaaagaagc aattgctatc ggagtaggga ttatagaaca
     7141 tgatgtaatt gatcaagtaa atatttatga ggcaacgaaa cttgctatgc gtgaagcgtt
     7201 agatcaatta acaccagaac ctgattttgt tctaatagat gcaatgccac taagatatac
     7261 cgaggcagaa ctatctctta tcaaagggga tacaaaaagc atttcgattg ctgcagcgtc
     7321 tatcatcgca aaggtaacaa gagatagatt aatgcagatg tacgatgaaa agtatcccgg
     7381 gtatgatttt gcaaacaata tgggctacgg cacaaaaaaa catttacttg gtttagatac
     7441 aattggtata tgtcctatcc atcgtataag ttttgcgcct gtaaaagaag caaagttgca
     7501 ttttgatagt ttaaaataac taaatcatat agagaaaaac gtattttcaa catggaaaat
     7561 acgttttttt atgccgtttt ataggttttg gtcattttac aaaaaagccc aatgtttgta
     7621 cactgggagt aactattagg gaggtgcaac agatggattt taaacaacga catacatggc
     7681 tcaaaattgc ttcttgtaag tctatttctg ctaaaaaaag agccagcatt tggcaaaaat
     7741 taacagaatt cgaccagtat gaaatgacaa cacaaacatt tgcagaatct ttctttcctg
     7801 tggataaact cgcacagatt ctaatggagc tagagacagc agaagcgtgc ttttttgatg
     7861 atgttacctt aatatggatt ttagatgatg cctatccagc gcttttaaga gaaatttatg
     7921 aagcgccgcc aattttattt tgtaaaggaa atattgattt attacaacaa caagcaattg
     7981 ccatcgttgg tacaaggcag atgagtgaat atggtaggaa agcttgtatg aaaattgcta
     8041 gtgaacttgc tgagaataag ctgactatag ttagcgggat ggctatcgga atcgactcta
     8101 cagcccatag agccacttta aataaacaag gtacaacgat tgcagtacta ggttcaggtg
     8161 tcaacaaagt ttatccaaag aaaaatgaac ttctagcgaa agaaattgtc aaagaaggtt
     8221 tgttattaag tgagtattta cccgatgaag aagcgaaaag atggcatttt ccagaaagaa
     8281 atcgaattat tagcggcttg gctataggaa cagtaataat agaagctgcc gaaagaagcg
     8341 gttcgttgat tactgctgat atagctttag aacaaaacag acaagttttt gctgttccag
     8401 gaaatatttt tattgataca tggcagggga cgaactattt aattcaagaa ggtgccaagt
     8461 tagttatgaa ttcgaacaat ataatagaag aatt
//
LOCUS       DASEAA010000116         8308 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.116, whole genome shotgun sequence.
ACCESSION   DASEAA010000116 DASEAA010000000
VERSION     DASEAA010000116.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8308
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.116"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1775
                     /locus_tag="U0342_002084"
     CDS             <1..1775
                     /locus_tag="U0342_002084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423427.1"
                     /translation="QLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK
                     LVYLYLNNTELTKLDVSHNTKLKSLSCVNAHIQDFSSVGKIPVLNNNLDAEGQTITMP
                     KETLTNNSLTIAVSPDLLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTF
                     TSENGAIVGTVTTPFEAPQPIKGEDVTVHYLDDKGEKLAADEVLSGNLDDPYTSSAKD
                     IPDYTLTTTPDNATGTFTTTSQSVTYVYTKNIVAAEPVTVNYVDDTGKTLAPSETLNG
                     NVGDTYNATAKQIDGYTLTTTPNNATGTFNTSSQTVTYVYTKNIVAAEPITVNYVNDT
                     GKTLAPSETLNGNVGDTYNATAKQIDGYTLSAEPTNATGQFTSSAQTVNYIYTKNPAP
                     EKGVVEIHYVDENNKQLSSATKISGTVGDNYTTEPKNIDGYTLTTTPDNATGTFNTSS
                     QTVTYVYTKNIVAAEPVTVNYVDANGKTLAPSETLNGTIGDTYKATTKQIDGYTLSAE
                     PTNATGQFTNSAQTVNYIYTKNTNIDQPLPDKKTTKPSNLKTTEVKKASDTLPKTGDS
                     TPWKSALLGVFLSSTALVIWKKKK"
     gene            complement(1820..2143)
                     /locus_tag="U0342_002085"
     CDS             complement(1820..2143)
                     /locus_tag="U0342_002085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466344.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenic metallochaperone ArsD family protein"
                     /protein_id="HEM2423428.1"
                     /translation="MKQISYFYSAENESEINLEIWKMFMNQSEDERKIHFDYTGIVFD
                     IQLGEVGKVDLPERVQMLIDKNGMEALPILVVDDAVYNYGEFSVIDAVEELLDVGVSI
                     QVEED"
     gene            complement(2151..3392)
                     /locus_tag="U0342_002086"
     CDS             complement(2151..3392)
                     /locus_tag="U0342_002086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466345.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1015 domain-containing protein"
                     /protein_id="HEM2423429.1"
                     /translation="MVNIRPFKAIRPIKNLAEKVASLPYDVLNSEEARELGDANKYSF
                     LHIDKAEIDLDPAVSPYDPAVYQKAADNLEQFELDGWLGREANPAFYIYQLTMDGRPQ
                     TGLVVCTSIDDYTNGKIKKHELTREEKELDRIRHVDVCDANTSPIFLTYRGKEAINAL
                     VESWVNENEPEYDFESFHGVAHKVWAITDAHILEDLSAAFSEVPALYIADGHHRTESA
                     VKVGLKRREEFPEAGPEAEFNFFLSVVFPEEQLEILDYNRVVNVPIEADFLSKVEASF
                     DVEKVGKEAFKPEKPKQVGMYLDGNWYKLTAKSEVIPNDVIGQLDVSILQSQVLTPIF
                     GIEDIRRDNRIDFVGGIRGLEELTRLVDNGSYSVAFAMYPPTMDDLLGVADAAEIMPP
                     KSTWFEPKLLSGLFVHDLESK"
     gene            complement(3481..4668)
                     /locus_tag="U0342_002087"
     CDS             complement(3481..4668)
                     /locus_tag="U0342_002087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoglycerate dehydrogenase"
                     /protein_id="HEM2423430.1"
                     /translation="MFNIQTFNAIAKEGLKTFDLEKYVIDANQPADGILLRSYNLHDF
                     DFPETVKAVARAGAGVNNIPVENCSEKGIVVFNTPGANANAVKELVLASLFVSARPIL
                     EGTEWVKELPAEDDVEQKVEAGKKAFAGTELAGKKLGIIGLGAIGALVANDALSLGMD
                     VVGYDPFVSVDTAWRISKEVERAMTIEEVLATCDYLTVHVPLTDKTRGMFNADTLQLV
                     KDNAVLLNFSRGELVDSASVKEALDDGLLRLYITDFATKELLNHKKVHVFPHLGASTE
                     EAETNCAKMAAKELQSYLETGSIKNSVNFPNVEMPYNGHPRIGICHKNIPNMVGQITT
                     ELGKYSLNILDMINRSKNEYAYTLIDIDKETQANLEQLKSDLLAVQGVLRVRVIEPLG
                     VTV"
     gene            complement(4661..5752)
                     /gene="serC"
                     /locus_tag="U0342_002088"
     CDS             complement(4661..5752)
                     /gene="serC"
                     /locus_tag="U0342_002088"
                     /EC_number="2.6.1.52"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466347.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-phosphoserine/phosphohydroxythreonine
                     transaminase"
                     /protein_id="HEM2423431.1"
                     /translation="MERVYNFSAGPAVLPVPVLEKVQRELLSYNGSGMSVMELSHRSE
                     LFQNILDDAESLIRELMEIPENYKVLFLQGGASLQFDMVPMNLANGKKAAYVNTGSWA
                     KKAISEAKKIQGVEVEVIASSEDRNFSYIPEIPTVSSDAAYLHVTTNNTIEGTAMFDV
                     PDSAVPVVADMSSNILSSVYDVKKFGLIYAGAQKNIGPAGLTLVIVREDLIGQVEGLP
                     SMLDFKVQAENDSMYNTPPTFAIYVAKLVFEWIKEQGGVAGIEALNRKKAALLYNYID
                     QSDFFSSPVEPSARSLTNVPFVTNSAEFDKAFVQEAEANGFKNLKGHRSVGGMRASLY
                     NAFPIEGVEALIAFMEKFANARKGGEVRV"
     gene            complement(6123..7271)
                     /locus_tag="U0342_002089"
     CDS             complement(6123..7271)
                     /locus_tag="U0342_002089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466348.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2423432.1"
                     /translation="MENKTRLWTKDYVFLLLGSVLLYIGFMVFMPTLPARIIELGGTQ
                     MEASLAVGLFSIVALLMRAIAGSWNDKFGPKVLIIVGFLILILTTVNFYWSTAVAALL
                     ILRLFHGAGWGIGTTSIATGVSKLVPPSRTGEGIGFYGLTTALGMSLAPIIAILIMNY
                     FSFDVLVTFSLVLMVFILILMTQVKIPKSEKIVHQKMKLFEKTALLPAGLCLLMAIPL
                     GGIQTFMMVYGTELGISTTWIYFIGQAIMVLVSRLFAGRLYDTKGHRFVIIPGALSMI
                     IGILILSFATGAISLFIASLFFGLGYGMSQPALQALAVDRAAPHNKGTANGTFLSGMD
                     IGMAVGSFGLSIVATYYNYAIMYRTAIIALVVFFAVYWFTLGRKVKNS"
     gene            complement(7285..7707)
                     /locus_tag="U0342_002090"
     CDS             complement(7285..7707)
                     /locus_tag="U0342_002090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466349.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2423433.1"
                     /translation="MRGYYDEISFDVNTTAKKMHLFLLRSIASYDVTPEQWSVLEGIE
                     ANEPISQKEIALWTKKDTPTVNRIVDVLLRKELVVREVSTEDRRISLLSLTDKGRKET
                     NELRDIVEASCERMFAGISRADLEQFTAILKNISTNIE"
     gene            complement(7810..8163)
                     /locus_tag="U0342_002091"
     CDS             complement(7810..8163)
                     /locus_tag="U0342_002091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466350.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423434.1"
                     /translation="MVTAIQKEQVRTEKNAAFLTSRPEVDYLERESFFITLKDAIKRE
                     WVVRLKYFQEADVSSLRLAPFEYPSAFLGLGEIETQDLVPLEIDMLTEEVILKDIVGY
                     EYVIEFRDIIDVELL"
BASE COUNT         2663 a         1996 c         1295 g         2354 t
ORIGIN      
        1 cacaattaat atattttcaa gctgaaggat gtagaaaaat aaaagagctt gatgtcacgc
       61 ataatacaca attatattta ttagactgcc aagccgctgg tataacagaa ttggatcttt
      121 cacaaaaccc caaattagtc tatttgtatt taaataatac tgaactaacg aaattagacg
      181 tttctcataa cacaaagctg aaaagtttgt cttgcgtaaa tgctcacatc caagacttct
      241 cttctgtagg taaaattcct gtccttaaca ataacttgga tgctgaaggg caaacaatca
      301 cgatgcctaa agaaacttta acaaacaaca gtttaaccat tgcagttagt cctgatttat
      361 tagatcagtt tggaaatccg atgaatattg aaccgggaga cggcggtgta tacgatcaag
      421 caacaaatac aataacttgg gaaaatctca gcacagacaa tccagccgta acctatactt
      481 tcacttccga aaacggagct atagtaggaa ccgtaacaac tccatttgaa gcccctcaac
      541 ccatcaaagg agaagacgta acagttcatt atcttgatga caaaggagaa aaattggcgg
      601 ctgatgaagt tttaagcggt aatttggacg atccttatac ttctagcgcg aaagacatcc
      661 cagattatac attaacgact actccagata acgccactgg aacattcact actactagcc
      721 agtccgtaac gtacgtgtac actaaaaaca tcgtagccgc agagcctgta acagtgaatt
      781 acgtggatga tactggaaaa acactcgctc catccgaaac attaaacgga aatgtaggcg
      841 acacatataa cgccactgcc aaacaaatcg acggctatac attaacaact acaccaaata
      901 acgcaaccgg aacattcaac acaagtagcc aaacagtgac atatgtgtac actaaaaaca
      961 tcgtagccgc agagcctata acagtgaatt acgtgaacga tactggaaaa acactcgctc
     1021 catccgaaac attaaatgga aatgtaggcg acacatataa cgctactgcc aaacaaatcg
     1081 acggctatac attatccgcc gaaccaacca atgcaactgg acaattcaca agtagcgcgc
     1141 aaaccgtcaa ctatatttac acaaaaaatc cagcccctga aaaaggagtt gtagaaattc
     1201 actatgttga cgaaaataat aaacaactga gctccgccac taaaatttct ggaacagtag
     1261 gagataatta cacaactgag ccaaaaaata tcgacggcta tacgctaaca actacaccag
     1321 ataacgcaac cggaacattc aacacaagta gccaaacagt gacatatgtg tatactaaaa
     1381 atatcgtagc agcagagcct gtaacagtga attacgtgga tgctaatggc aaaacgctcg
     1441 ctccatccga aaccctaaac ggaactattg gcgacacata taaagcaacc accaaacaaa
     1501 tcgacggcta cacattatcc gccgaaccaa ccaatgcgac tggacaattc acaaatagcg
     1561 cacaaactgt caactacatt tacacgaaaa acacaaacat cgaccaacct ttaccagata
     1621 aaaaaacaac gaaaccgtct aatttaaaga caaccgaagt gaaaaaagct tcagataccc
     1681 taccaaaaac aggcgattcc acaccatgga aatcagctct acttggggtc ttcctatcat
     1741 ccacagctct agttatctgg aaaaagaaaa aatagtaaaa aagccggcca ggattaattt
     1801 cccgaccggc tttttgatct caatcttctt ccacttggat agaaacaccc acatccagta
     1861 attcctcaac tgcatcaatc acagaaaact ccccataatt gtatactgca tcatctacaa
     1921 ctaaaatcgg caaagcttcc attccattct tatcaatcaa catttgaacc cgctctggca
     1981 agtccacttt cccgacttct cctagctgaa tatcaaacac gatgcctgta taatcaaaat
     2041 ggatttttcg ctcatcttca ctttgattca taaacatttt ccatatctct aggttaatct
     2101 cagactcatt ttccgcagaa taaaagtaac taatttgctt catattaaaa ttatttactt
     2161 tctaaatcgt ggacaaacag cccgcttaat aattttggtt caaaccaagt cgattttggc
     2221 ggcatgattt ctgcggcatc tgccacacca agtaaatcgt ccattgtcgg cgggtacatc
     2281 gcaaatgcca ccgaataact tccattatcc accaaacgag ttagctcttc taatccacgt
     2341 attccgccga caaaatcaat gcgattgtcg cgacgaatat cttcaatccc aaaaattggc
     2401 gttaaaactt gcgattgtaa tattgaaaca tccagctgac caataacatc gtttggaatc
     2461 acttcgcttt tcgccgtaag tttgtaccaa tttccatcta aatacatccc tacttgtttt
     2521 ggcttctctg gtttaaatgc ttcttttcca accttctcca cgtcaaaact agcctctact
     2581 ttgctaagga aatccgcttc aattggcaca ttcacaaccc tattataatc aagaatttct
     2641 aattgctctt ctgggaaaac aactgataaa aagaaattaa attctgcttc tggcccagcc
     2701 tctgggaatt cctctcgccg tttcaaacca actttcacag cagattccgt tctatggtga
     2761 ccgtctgcga tatatagcgc tgggacttcc gagaacgccg ctgacaggtc ttctaaaata
     2821 tgtgcgtccg taattgccca aaccttatgc gcgaccccgt ggaagctctc aaagtcatat
     2881 tcaggctcat tttcattcac ccaagactca acaagtgcat taattgcttc ttttccacga
     2941 taagtaagga aaatcggact tgtatttgca tcacaaacat ctacatgacg aatccggtct
     3001 aactctttct cttcacgagt taactcatgt tttttaattt tcccattggt ataatcatca
     3061 atcgacgtac aaacaaccag ccctgtttgc gggcgaccat ccatcgtcag ttgataaata
     3121 taaaatgccg ggtttgcttc tctaccaagc caaccatcca actcaaattg ttccaaatta
     3181 tccgctgctt tttgataaac agctgggtcg taaggggaaa ccgccggatc taaatcaatt
     3241 tccgccttat caatatgtaa aaaagaatac ttatttgcat caccaagttc gcgcgcctct
     3301 tccgaattaa gtacatcata tggcaaggaa gccacctttt ccgctaaatt tttaatcgga
     3361 cgaattgctt taaatggacg tatatttacc attgttatcc tcctttttag taaaagagca
     3421 tgaacccgtc tggcaataac cataaagttt catgctctca ttatttcccg ggtaataatt
     3481 ttaaaccgta acacctaatg gttcaataac tcgaacacgc aaaacccctt gcacagctaa
     3541 taaatcactt ttcagttgtt ccaaattagc ttgcgtttcc ttatcaatat caattaatgt
     3601 gtaggcatat tcatttttac tgcgatttat catatctaaa atgtttaacg aatatttccc
     3661 tagctccgtc gtaatttgtc cgaccatatt aggaatgttt ttgtgacaaa ttccaattcg
     3721 cggatgtcca ttatacggca tttccacgtt cggaaaatta accgagtttt taatactacc
     3781 tgtttcaaga tatgattgca gttctttcgc agccatttta gcacagttgg tttcggcttc
     3841 ttccgtcgat gcacctaaat gaggaaatac atgcactttt ttgtggttta gtaattcttt
     3901 tgtcgcgaaa tctgtaatat ataaacgtaa aagtccatca tctaaagctt ctttcacaga
     3961 ggctgaatcc actaactcac cacgagaaaa gtttaataaa acagcattat ccttcactaa
     4021 ttgtagtgta tctgcgttaa acatgccacg tgttttatcc gttaaaggca catgaactgt
     4081 taaataatcg catgtggcca aaacttcttc tatcgtcatc gcacgttcca cttctttaga
     4141 aattctccaa gccgtgtcta ctgaaacgaa tggatcgtat ccaaccacat ccatcccaag
     4201 cgataaagcg tcattggcta ccaatgcacc aattgcgcct agaccgataa tcccaagttt
     4261 tttgccagca agttctgttc ccgcaaaggc tttcttccca gcttcgactt tctgctcgac
     4321 atcatcttcc gccggtaatt ctttgaccca ttccgttcct tccaaaattg ggcgcgccga
     4381 aacgaataaa ctcgcaagaa ctagttcttt cacagcattg gcattcgcgc caggtgtatt
     4441 gaatacaaca ataccttttt cagaacaatt ttctactggg atattattaa ctcctgcacc
     4501 agctcgggca actgccttca ctgtctccgg aaagtcaaaa tcgtgtaagt tgtaactccg
     4561 tagtaaaatc ccgtctgctg gctgatttgc atcaatcaca tatttttcga gatcaaatgt
     4621 ctttaagcct tcttttgcga tagcattaaa cgtttggata ttaaacacgt acttctcccc
     4681 cttttcttgc atttgcaaat ttttccataa aggcgattag agcttccacc ccttcaattg
     4741 gaaatgcatt ataaagactt gctcgcatac cgcccactga gcgatgtcct ttcaagtttt
     4801 taaaaccatt tgcttcagct tcttgaacaa aagctttatc aaactccgct gaattcgtca
     4861 caaaaggaac attcgtgagc gatctagcag aaggttcgac cggtgaagaa aagaaatccg
     4921 attgatcaat ataattatat aataaggccg cttttttgcg attcaacgct tcaattccag
     4981 caacgccacc ttgctcctta atccattcaa atactaattt tgctacataa atggcaaatg
     5041 tcggtggtgt gttatacatg gaatcattct cggcttgtac tttaaaatct aacatagaag
     5101 gaagtccctc tacttgccct atcaagtctt cgcgcacgat gacaagcgtt aatccagcag
     5161 gcccaatgtt cttttgcgct cctgcataaa ttaagccaaa ttttttcaca tcataaacgc
     5221 tcgataaaat attggaggac atatccgcaa cgaccgggac agctgagtct ggcacatcaa
     5281 acattgctgt tccttcgatt gtattatttg tagttacatg taagtaagcc gcgtcactag
     5341 aaactgtagg aatctcagga atatagctga aattgcggtc ttccgatgag gcaattactt
     5401 ccacctctac accctgaatt ttcttagctt cggaaattgc tttcttcgcc caagatccag
     5461 tgtttacata cgctgctttt ttgccatttg caagattcat tggcaccata tcaaattgca
     5521 aactcgcgcc accttgcaaa aatagtactt tgtaattttc tggaatctcc atcaattctc
     5581 gaattaagct ctccgcatcg tctaggatgt tttgaaataa ttctgaacgg tgactcagct
     5641 ccattactga cattcctgaa ccattgtaag agagtagctc cctttgaacc ttttcaagta
     5701 ccggtactgg taaaactgcc ggacctgccg aaaaattata aacacgttcc actcaacatc
     5761 tctcctgtct tcaaatttcc ccaattactt acaaaaattt tcaccaataa tcgaatactt
     5821 attggccaga tatgagcctt cctcgttaca cttatgcttt tcgaagttct gttgttaaga
     5881 aataaaaaag ccgaacctgt gatattctac acaatattcg gatttttcag cgcttaaaag
     5941 taaacactgc cttttgtact tttgtatatt atagcagaaa cagagctgtt tttcagaaaa
     6001 tttatactaa atctacaaat aaatgtgatg tttaaacttt ctgacattaa aaaagcacga
     6061 gaaaccgcta tttaaagcaa ttctcgcact tctacttttt gaaaaacact tcacaaaaga
     6121 tgttagctat ttttcacttt tcgtcctaaa gtaaaccaat acacagcaaa aaatacaaca
     6181 agtgcaataa ttgctgtgcg atacataata gcataattgt agtaagtcgc aacaatactc
     6241 aaaccaaaac taccaacagc cattccaatg tccattcccg aaagaaaagt cccgttcgcg
     6301 gtacctttat tgtgcggtgc agcccggtcc acagccagtg cttgaagcgc cggttgcgac
     6361 atcccgtaac ctaacccgaa gaataacgat gcgataaaca agctgattgc accagttgca
     6421 aaagaaagaa ttaatatccc aattatcatc gaaagcgctc ctggaataat aacaaaacgg
     6481 tgtcccttcg tatcataaag tcgcccagca aacaaacggc ttacaagaac cataatcgct
     6541 tgcccgataa aatatatcca cgttgtcgaa atccccagtt ctgttccata taccatcata
     6601 aatgtctgga tcccaccaag cggaatagcc attaataaac acaagcccgc cggaagcaag
     6661 gccgttttct caaacaattt cattttttga tgtacaatct tttctgattt tggaattttc
     6721 acctgtgtca tcaaaattaa aataaacacc atcaaaacaa gcgaaaacgt cactaaaaca
     6781 tcgaaagaaa aataattcat aattaaaata gcgataatcg gcgcaagtga cattccaagt
     6841 gcagtcgtaa gcccataaaa accaatacct tctcccgttc tgcttggtgg cacgagttta
     6901 gaaacgcctg tagcaataga agttgttccg ataccccagc cagccccgtg aaaaagccgt
     6961 aatataagta aggccgccac cgccgttgac caataaaagt tcactgtagt taaaattaaa
     7021 atcaaaaagc ccacgataat aagtactttc ggtccgaatt tgtcattcca actcccagca
     7081 atcgcccgca ttaatagtgc tacgatggag aatagcccca ccgccaaact cgcttccatt
     7141 tgcgttccac ctagctcaat aatgcgagcc ggcaacgtag gcataaacac cataaatcca
     7201 atatataaaa gtacactgcc taacaataaa aatacgtagt ccttcgtcca aagtcttgtc
     7261 ttattttcca aaatttaccc ctctttactc tatattagta gaaatgttct ttaaaatagc
     7321 cgtgaattgt tccaaatctg cgcgagaaat cccagcaaac attctttcac aactcgcctc
     7381 cacgatatcg cggagttcat tcgtctcttt tctccctttg tccgttaaag ataaaagtga
     7441 aatccgtcta tcttctgtac tcacttcccg cacaacaagc tctttcctaa gtaaaacatc
     7501 gacaatccga ttcacggttg gcgtgtcctt tttcgtccaa agagcaatct ctttttgcga
     7561 aatcggctcg ttcgcctcaa tcccctctaa aaccgaccat tgctctggtg tcacatcata
     7621 acttgcaatc gaacgcagca aaaataaatg cattttcttc gctgtcgtat ttacatcaaa
     7681 tgatatttca tcataatatc cgcgcatatt tatcctcatt tctattgtcg taacaataat
     7741 tgtcataaca accattatac atactgatta cttttttgac aagaaaaaca gtcgaataaa
     7801 cgactgttcc tacaataatt ccacatctat aatatctcta aattcgatta catactcata
     7861 cccaacaata tctttcaaaa taacttcttc cgttaacata tctatttcta gcggcactaa
     7921 gtcctgtgtt tcaatctctc caagcccaag aaatgcggaa ggatattcaa atggcgctaa
     7981 acgcagagaa gatacatctg cttcttgaaa atattttaaa cgaacgaccc attctcgctt
     8041 tatagcatct tttaatgtga taaaaaagct ttcgcgctct aaataatcca cttctggccg
     8101 actcgttaaa aaagcagcat tcttctctgt tcgcacttgc tctttctgaa ttgccgtaac
     8161 catcattatc acctcttaac tttattatac gaacaaacgt tcttaaaatc aagtaatttg
     8221 ctaaaaaatt tttttcataa gagcctgaat aggtttagcg cttacatatt ctttttccga
     8281 caaaaacact tgcaaattaa tgaatagt
//
LOCUS       DASEAA010000117         8175 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.117, whole genome shotgun sequence.
ACCESSION   DASEAA010000117 DASEAA010000000
VERSION     DASEAA010000117.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8175)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8175)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8175
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.117"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..456
                     /locus_tag="U0342_002092"
     CDS             <1..456
                     /locus_tag="U0342_002092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423435.1"
                     /translation="CNLKKKASKLKKLNPDNKTDFQLISRIVSKRAPLSNILDVKESE
                     DLLMFYVLIALKNELYYLEELDVIVLMEQEGTDLYVLDILSTKKLDVVEVLSYLSTKK
                     IETIHLLFTPEKSKYIDAAYIIETEDMLFVRPNVLTSENYFLFPATSHA"
     gene            complement(447..797)
                     /locus_tag="U0342_002093"
     CDS             complement(447..797)
                     /locus_tag="U0342_002093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465783.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2423436.1"
                     /translation="MEIQVEEAVVKLILHGGNTRKEAYKAIDFAEKYQFDEADKHLQI
                     AQDQFQEGHIWQTKLVSIRDSETVAHPSFLLIHGQDHLMTAQAELQLAKRIIKQYKHQ
                     QRIEERLTKLENQA"
     gene            948..1139
                     /locus_tag="U0342_002094"
     CDS             948..1139
                     /locus_tag="U0342_002094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423437.1"
                     /translation="MEERLYELEDKVQDLELEVHDLRDRIQLLEDKPAARSSLLGHNV
                     WVLIPLVAIISWMVVEIFS"
     gene            1136..1480
                     /locus_tag="U0342_002095"
     CDS             1136..1480
                     /locus_tag="U0342_002095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423438.1"
                     /translation="MKGTFNGFLFICNIVIFIQKITIKVSQFSSFLSLSQKIYIYLLA
                     FFKNNSKISYRIEFYLDESFIFINVIFMGIRPYHGYNDFWCIHLPIEWQLVRHLFRHQ
                     NHYLFSFISLAV"
     gene            1644..2165
                     /locus_tag="U0342_002096"
     CDS             1644..2165
                     /locus_tag="U0342_002096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type 1 glutamine amidotransferase"
                     /protein_id="HEM2423439.1"
                     /translation="MTLKGKKVIALVSEDFEDLELWYPVLRLREAGASVHLVAEEAKK
                     VYHGKYGVPVTSDYDFDSVRAEDYDGILVPGGWSPDKLRRFDSVLNLVRAFDKAKKPI
                     GQICHAGWVLVSAGILEGVNVTSTPGIKDDMTNAGAIWHNEPVVTDGHIISSRRPPDL
                     PEYLPAFISALED"
     gene            complement(2208..2474)
                     /locus_tag="U0342_002097"
     CDS             complement(2208..2474)
                     /locus_tag="U0342_002097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423440.1"
                     /translation="MFLKSLLAGVALAVVVFLASFLMPDYTVSTLYSIVTTIIVFASI
                     ILSAFVSFGGRSGNPSRKSQLRWSILLLVAAIPSFIGFIVTFYF"
     gene            complement(2587..3879)
                     /locus_tag="U0342_002098"
     CDS             complement(2587..3879)
                     /locus_tag="U0342_002098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NCS2 family permease"
                     /protein_id="HEM2423441.1"
                     /translation="MFQLKANGTDVKTEVISGFTTFLTMVYIVVVNPAILSAAGVPFN
                     TVFMATIISAVIGTLWMAIFANYPIAIAPGLGMNAYFVTVVTTQKLDYSVAFAAVFVA
                     GIIFLLLSLTPLREKIIEAIPHNLKAGITAGIGLFIAFLGFRMTGIIVSNDSNLVGLG
                     DLHSKEAILAIVGLLITLILLALNVKGALFIGMIATGIIAFITGELKFTEGIVKLPPM
                     PEFVFTNPIHAFGDVMSYGLYAVVLSFLLITIFDTTGTMIGVAKKAGLMKGESLPNAK
                     QALMADAVATSVGSMFGTTPTSAYIESSAGVATGGRTGLTTLTVAILFMVSAFFAPLV
                     GAVSGISAITAPALIVVGSMMIGAVKEIDWDTLDEAFPAFLVILAMPLTSSIAIGLAF
                     GFISYPVLKVFTGKWRELNWFLIVIAVLFFILVAFLPH"
     gene            4052..4681
                     /locus_tag="U0342_002099"
     CDS             4052..4681
                     /locus_tag="U0342_002099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2423442.1"
                     /translation="MKAVVFDFDGTMLDTENLWYTETMNYLKETYDIDLPDEIYQQII
                     GTSEEPIIRYMMEATNGAFDKEAFLTTVAEACHLGQQSLGFRDGFKEFFEQVKANDFK
                     IGLATSSGFDWIGPTLDRLGILADFETIQTADHVDEIKPHPALYLQAVEALGVKPEEA
                     IAIEDSKNGALSAMQAGLKVYIVPNEATKNITFPKEATVVSSFAEINLK"
     gene            complement(4725..5873)
                     /locus_tag="U0342_002100"
     CDS             complement(4725..5873)
                     /locus_tag="U0342_002100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2423443.1"
                     /translation="MNNSKIAKKHQQMPVNILADIGTLAKTMPDILDLSIGDPDLITD
                     ESIINAAFEDVRAGHTKYTESGGDVELIDAIRGYFSRNYDLSFERSQIRATVGALHGM
                     YLTLQTILDDGDEVIIHEPYFSPYKDQVLNSGGTPIIIPTYEKDDFAINVDILEAAIT
                     DKTKALILNSPNNPTGAVFSPETFEKIANLAKKYDFFILSDEVYDGFSFYEDFVPMAK
                     FAPDHTITFGSMSKNFAMTGWRLGYMIAPTYLNEAAKIINEGITYSAPTPSQRAAIYA
                     LNHSETLIPLVTETFQKRLEYIAKRVEEIPYLSLHPLKGSIYAFINISKTNMDSVSFT
                     EYVLKETQVLVIPGLAFGESGDNYVRLAATQDISVLEEAFNRLAKLTF"
     gene            complement(5949..6674)
                     /locus_tag="U0342_002101"
     CDS             complement(5949..6674)
                     /locus_tag="U0342_002101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid ABC transporter ATP-binding protein"
                     /protein_id="HEM2423444.1"
                     /translation="MIDIKNLHKHFGKLEVLKGIDLEIASGEVVVVIGPSGSGKSTFL
                     RCLNLLEQPTTGTILFENKDLMAKQTNVNELRQKMGMVFQNFNLFPHKNVLENLMLAP
                     MKVKNEDSAAAKKHALSLLEKVGLADKATSYPSQLSGGQQQRVAIARALAMNPDVMLF
                     DEPTSALDPEMVGEVLSVMKSLAKEGMTMVVVTHEMGFAREVADRVVFMDAGVIQEQG
                     TPEEVFGNPQNDRTKDFLGKVLA"
     gene            complement(6667..8127)
                     /locus_tag="U0342_002102"
     CDS             complement(6667..8127)
                     /locus_tag="U0342_002102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465774.1"
                     /note="The N-terminal region of this protein, as described
                     by TIGR01726, is a three transmembrane segment that
                     identifies a subfamily of ABC transporter permease
                     subunits, which specificities that include histidine,
                     arginine, glutamine, glutamate, L-cystine (sic), the
                     opines (in Agrobacterium) octopine and nopaline, etc;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEM2423445.1"
                     /translation="MQKHLLQKIAAILLVFIVVFSGFTTVFAADTEDQTLAKIQEKGV
                     LTVGLSADYPPYEFHQTIDGKDKVVGFDVSIAEKIAKDLDVKLEIKEMNFDSLLGSLK
                     TGKIDMIISGMSPTPERQKEVDFSDPYMFVQQRVVIRKTDKDKFTSVNDFSGVKVGAQ
                     KQTTQEELAQNELVGSEVVSLQKVPDLILNLKSNKVDAVVLEGPVAEAYISQDKTLAM
                     ADIKFANGSKETAIAMPKGSTALQEKVNASIKDIQDTGLLKKYQKEANKLMFQDGSFY
                     EKYGNYFITGTLITIALAAIGVLCGAILGSLLALMKLAKTRWLRWPAACYIEFVRGTP
                     LLIQIFIVFFGTQIIGMDVSAFVSGCIALSLNSAAYVAEIIRAGISAVNKGQMEAARS
                     LGMTQGASMRYIILPQAVKNILPALGNEFVTVIKESSIVSVIGVTELMFMTGVVQGAS
                     FKPFIPLIITSLIYFVLTFSLSRLLGVAERRMRTSD"
BASE COUNT         2538 a         1460 c         1630 g         2547 t
ORIGIN      
        1 tgcaatttga aaaaaaaagc tagtaaatta aaaaagctga atcccgataa taaaacggat
       61 tttcagctaa ttagtcgtat tgtatccaaa agagcaccac tttctaacat attagatgtc
      121 aaagaaagtg aagatttact gatgttttat gtattaattg cgttaaaaaa cgagctttat
      181 tatttggaag aattagatgt aattgttctg atggaacagg aaggtactga tctatatgta
      241 ctggatattc ttagtacaaa aaaactagat gtggtggaag ttctaagtta tctttctacc
      301 aaaaaaattg aaacaatcca tcttcttttt acgccagaaa aaagcaaata cattgatgcg
      361 gcttatatca ttgaaacgga agatatgttg tttgtgcgtc caaatgtgct tacaagtgaa
      421 aattacttct tatttccagc gacctctcac gcttgatttt caagtttagt aagtcgttct
      481 tcgatacgtt gttgatgttt gtattgttta atgattcttt tggcaagttg caattccgct
      541 tgtgccgtca ttaagtgatc ctgcccatga ataagtaaaa aggaaggatg agctaccgtt
      601 tctgagtcgc gaatggatac taattttgtt tgccaaatat gaccttcttg gaattgatcc
      661 tgtgcgattt gcagatgttt atcggcttca tcaaattgat acttttccgc aaaatcaatt
      721 gctttgtatg cttcttttcg tgtgtttccg ccatgcaaaa tgagttttac aacagcttct
      781 tctacttgaa tttccatttt tccaccccaa cagttgatag ttttctttca ttgtagcaaa
      841 tgcctgaacg gtatgacaat aaattagcaa taaatcagcc tatggaacga tgtgtttcat
      901 ggagcttagc gtataatagg caatagaaaa ggtgtggagg gattcaaatg gaagaacgtt
      961 tatacgaact tgaagataaa gtacaagacc ttgagcttga agtgcatgat ttgcgtgata
     1021 gaattcaact gctcgaagac aaaccagctg ctcgctctag cttacttggt cataatgtat
     1081 gggtcttaat tccattagtc gctattattt cttggatggt tgtagaaatt tttagttgaa
     1141 ggggaccttt aatggtttcc tttttatttg taatatagta atttttatac agaaaataac
     1201 aataaaagta agccagttct catctttctt atctttgtca caaaaaatct atatttattt
     1261 acttgctttt ttcaagaaca atagtaaaat aagttatagg atagagtttt acctcgatga
     1321 aagtttcatt tttattaatg tgattttcat ggggataaga ccctatcatg gttataatga
     1381 cttttggtgt atccatcttc caatagaatg gcaactagtc agacatctgt ttagacacca
     1441 aaatcattat ttgttttcat tcatctcatt ggccgtgtag ttcatgtcta tgcctcatcc
     1501 cgttatgcat agacgcccga acatgatggc aacgctggaa atgtttattt cgagcgtctt
     1561 tttttgtctt cttttatagg cggtataatt taataacatt ctagttattg ttatactgta
     1621 gaagaggata ggaggagatt tatatgactt taaaaggtaa aaaagttatt gcacttgtca
     1681 gtgaagactt tgaggattta gagctttggt atccagtgct tagattgcgc gaggcaggag
     1741 cttcggtgca tctagtggct gaggaagcaa agaaagttta tcacggtaag tacggagttc
     1801 ctgttacttc tgactatgat tttgattctg ttcgcgcaga agattatgat gggattttag
     1861 ttccaggtgg ctggtcccca gacaaattac gccgttttga tagcgtacta aatttggttc
     1921 gtgcgtttga taaggcgaaa aaaccaattg gacaaatttg ccatgctgga tgggtacttg
     1981 tttcggctgg tattttagaa ggcgtgaatg taacaagtac accgggaatt aaagatgata
     2041 tgacgaatgc gggagctatt tggcataacg agcctgttgt aacagacggc catattattt
     2101 cgagtcgtcg cccaccagac cttccagaat atttaccagc atttatttcc gctttagaag
     2161 attaaaaaaa gaagcatttc catattttgg gaatgcttct ttttagttta aaagtaaaaa
     2221 gttacgataa agccgataaa actaggaatt gctgcaacta aaagcaggat actccagcgt
     2281 aattggcttt ttcgacttgg gtttccacta cggccaccaa aggatacgaa tgcggataga
     2341 ataatggatg caaagacaat gatagtcgtt acaatggaat ataaagtgga tacagtgtag
     2401 tcaggcatca aaaagcttgc tagaaaaaca acaacagcaa gtgcgacacc agcgagcagt
     2461 gattttaaaa acacgacaag ttcaactcat ttctaattag tttctctctt ctttatagca
     2521 aacgagcggg tttttgtcca ataaaaaagc gcctagctga gttcagtaga cgcttttatt
     2581 cattgattaa tgtggtaaaa atgctacgag aatgaagaat aatacggcga taacgattag
     2641 gaaccagtta agttcacgcc atttaccagt gaatactttt aatactgggt aagaaataaa
     2701 tccgaatgct aagccgattg cgatgcttga agtaagtggc atagctagaa taactaagaa
     2761 agcagggaat gcttcatcta atgtatccca gtcgatttct ttaacagcac caatcatcat
     2821 actaccaaca actataagtg ctggtgcagt aatagcagaa attccagaga cagcaccaac
     2881 aagtggagcg aagaatgctg ataccatgaa caggatagca actgtaagtg tagtaagacc
     2941 agtacgtcca ccagttgcaa ccccagcaga agattcaatg taagcacttg ttggtgttgt
     3001 accaaacatc gaaccaacac ttgttgcaac cgcatcagcc attaaggctt gtttcgcatt
     3061 tggtaatgac tcacctttca ttaggccagc tttttttgca accccgatca ttgttccggt
     3121 tgtatcaaaa atcgttataa gtaagaagga caggacgaca gcatagagcc cgtaactcat
     3181 cacatcacca aaagcgtgaa taggattagt gaagacgaat tctggcattg gcggaagttt
     3241 aacgatacct tctgtaaatt tcagttcacc agtgataaaa gcaatgatac cagttgcaat
     3301 catcccaata aataaagcac cttttacgtt taaagcaagc aagattaaag tgattaaaag
     3361 accaacaata gctaaaatag cttctttgga atgtaaatca cctaaaccta ctaagttaga
     3421 atcgttagaa acaataatgc ctgtcatacg gaagccaagg aaagcgataa ataaaccaat
     3481 accagcagta atcccagctt ttaaattatg tggaatagct tcaatgattt tttcacgaag
     3541 cggtgttaaa gataataata agaaaataat acctgctaca aagaccgcag cgaatgcgac
     3601 cgaataatct agtttttgag ttgtaactac tgtgacgaag taagcgttca taccaagtcc
     3661 tggcgcaatc gcgattggat agttagcgaa aattgccatc cataatgtac cgattactgc
     3721 tgaaatgatt gttgccatga atacagtgtt gaatggaaca cctgctgcgg aaagaattgc
     3781 ggggttaact actacgatat ataccatcgt taggaatgta gtaaaaccag agataacttc
     3841 cgttttaaca tctgtgccgt ttgcctttaa ttgaaacatg cgtgtgtttc actccttttt
     3901 taaaatcatg cttaatggta aataacgaac attaaaaacc acaaatacaa tattattcgt
     3961 tttttactaa aaaagcaacc ctttttcgaa gatttcttaa atagtttatc tatgttacaa
     4021 tgaaaatatc acttatacta ggaggatgca tgtgaaggca gttgtttttg attttgatgg
     4081 aactatgctt gatacggaaa atttatggta tacagagaca atgaactatt tgaaagagac
     4141 gtacgatatt gatttaccag atgaaattta tcaacaaatt atcggtacaa gtgaagaacc
     4201 aattattcgc tatatgatgg aagcaacgaa cggggctttt gataaagaag cttttttaac
     4261 tactgtggcg gaagcttgtc atcttggtca acaatcactt ggctttcgtg atggttttaa
     4321 agaatttttt gaacaagtaa aagcgaatga ttttaaaata ggccttgcaa cgagttcggg
     4381 atttgactgg attgggccta cgctggatcg tctgggcatt ttagctgatt ttgagacgat
     4441 acaaacggca gaccatgtgg atgaaattaa gccacatccg gcactttact tacaagcagt
     4501 agaagcgctt ggggttaaac cagaagaagc aattgctata gaagattcca aaaatggtgc
     4561 gctatcagca atgcaggctg ggttaaaggt gtatatcgta ccgaatgaag ctacaaaaaa
     4621 catcactttt ccaaaagagg cgacggttgt ttcttctttt gcagaaatca atttaaaata
     4681 gaaaaaagag caaacttgcc tatgaagcga gtttgctctt tttgttaaaa ggttaatttg
     4741 gctagacggt taaatgcttc ttctagcacg ctaatgtctt gggttgcagc taggcgaaca
     4801 taattatcac cagattcacc aaaagctagc ccaggaatga cgaggacttg tgtttctttt
     4861 aagacatatt ctgtaaatga aacggaatcc atatttgttt tagaaatatt aataaaggcg
     4921 taaatcgaac ctttaagtgg atgtaaagaa agatatggga tttcttccac ccgttttgcg
     4981 atgtattcta ggcgtttttg gaaagtttct gttactaaag gaattagtgt ctcagaatga
     5041 tttaatgcgt aaatagcagc tctttgggac ggtgtaggag ctgaataagt aattccttca
     5101 ttaataatct ttgcagcttc gtttaaataa gtaggagcaa tcatatatcc taagcgccaa
     5161 ccggtcattg cgaagttttt agacatacta ccaaatgtaa tcgtgtgatc tggcgcgaat
     5221 ttggccattg gtacgaagtc ttcataaaaa ctaaaaccat catatacttc atccgacaaa
     5281 ataaaaaagt catatttttt cgctagatta gcaatttttt caaaggtttc cggtgaaaaa
     5341 acagcaccgg tgggattatt aggtgaattt aaaattaaag cttttgtttt atcagtaatg
     5401 gcagcttcta aaatatcgac attaatcgca aaatcgtctt tctcataggt tggaataatg
     5461 ataggagtac caccggaatt taacacttga tctttatacg gggagaagta gggttcgtga
     5521 ataatgactt catcgccgtc gtcgagaatg gtttgcaagg ttaggtacat accatgaagc
     5581 gcgccaactg tagcgcggat ttggctgcgt tcaaaagaca aatcataatt acgactaaaa
     5641 taaccacgaa tagcatctat gagttctaca tctccaccag attctgtgta ttttgtatgg
     5701 cctgcccgta cgtcttcaaa agcggcatta ataatcgatt catccgtaat taaatcagga
     5761 tcaccaatgg ataaatcgag aatatcaggc attgttttgg caagtgtgcc aatatcagca
     5821 agaatgttca caggcatttg ttgatgtttt ttagcaattt ttgagttatt catcatgtat
     5881 aattagctcc ttttttctat aagtgcagat aaacgcctca cctaaaatag gcgagacgta
     5941 atctttggtt atgctaaaac ttttcctaaa aagtcttttg tacgatcgtt ttgcgggttc
     6001 ccgaatactt cttcgggcgt gccttgttct tgaatcacgc cagcatccat gaagacaacg
     6061 cggtcggcaa cttctcttgc gaagcccatt tcgtgcgtta cgacaaccat cgtcatacct
     6121 tctttagcaa gcgacttcat aacgcttaat acttcaccga ccatttcggg gtcaagtgcg
     6181 gaagttggtt catcgaatag cattacgtca ggattcattg cgagtgctcg ggcaatggct
     6241 acccgttgtt gttgtccacc agaaagttgg gaagggtagc tagttgcttt atcagctaga
     6301 ccgacttttt ccagtagaga aagcgcgtgt tttttcgcag ctgcactatc ttcattcttt
     6361 actttcatag gcgctaacat taggttttca agaacatttt tatgcgggaa taagttgaag
     6421 ttttggaaaa ccatgcccat tttttgacga agttcgttga cgttggtttg ttttgccatt
     6481 aggtctttgt tttcaaaaag aatcgtgccg gttgttggtt gttctaataa gttcaggcaa
     6541 cgtaagaaag tactttttcc gcttccggaa gggccgataa ctacgaccac ttctccagat
     6601 gcgatttcaa gatcaatacc ttttaagact tctaatttgc caaaatgttt gtgtaaattt
     6661 ttaatatcaa tcacttgttc tcattctcct ttcagcaaca cctagtagtc ttgataagct
     6721 aaatgttagt acaaagtaaa ttaatgatgt gataattagt gggataaatg gcttgaagct
     6781 tgcgccttgg actacgccgg tcataaacat tagttctgtt acaccgataa cggatacgat
     6841 ggaagattct ttaataacag tgacgaattc attcccaaga gcaggaagaa tatttttcac
     6901 ggcttgcggt aagatgatgt aacgcatgct agcgccttgt gtcataccaa gggaacgagc
     6961 tgcttccatt tgacctttgt tgacagcaga aatacctgcg cggataattt cagcaacata
     7021 agcggcactg tttagcgata gggcgataca accagaaaca aaggcggata cgtccatacc
     7081 gataatttga gttccgaaaa agacgatgaa aatttgaatt agaagtggcg taccacggac
     7141 aaattcaata taacatgctg ctggccagcg taaccatctt gttttcgcca gtttcatgag
     7201 cgctagtaat gagccgagaa tggcaccaca taatacgcca atagcggcaa gggcaatagt
     7261 gattaatgta ccagtgataa agtaattacc atatttctcg taaaagctac catcttggaa
     7321 cattaattta ttggcttctt tttgatattt tttcagtaag ccggtatctt gtatatcttt
     7381 aatagaagcg ttgacttttt cttgtaaagc tgtagaacct tttggcattg cgatggcggt
     7441 ttctttgcta ccattagcaa atttgatatc cgccatagcg agtgtcttat cttgactaat
     7501 ataagcttca gcaactggac cttctaaaac aaccgcatcg actttgttgc ttttaaggtt
     7561 aagaataagg tccggtactt tttgaaggga aactacttct gaaccaacta gctcattttg
     7621 agctaattct tcttgtgtcg tttgtttttg ggcaccaact ttcacgccac taaaatcatt
     7681 cacacttgta aatttatctt tatctgtctt tctaatcaca acacgttgct gaacgaacat
     7741 gtatggatca gagaaatcca cttctttttg acgttcgggt gtaggtgaca tcccggaaat
     7801 aatcatatca atcttgccag tttttagtga gccaagcaag ctgtcgaaat tcatttcttt
     7861 aatttctaat ttaacatcta aatctttggc aattttttcc gcaatactta catcaaaacc
     7921 aacgacttta tctttaccgt cgattgtttg atgaaattca tacggtggat agtcagcgga
     7981 aaggccgacc gttaaaacac ctttttcttg aattttagct aaagtttgat cttctgtatc
     8041 agcggcgaac acagttgtga agccagaaaa tacaactata aaaacaagta aaattgctgc
     8101 aatcttttgt aataaatgct tctgcataag tacaactccc tttagtattt gagtaattta
     8161 taatcaatga atcgt
//
LOCUS       DASEAA010000118         8129 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.118, whole genome shotgun sequence.
ACCESSION   DASEAA010000118 DASEAA010000000
VERSION     DASEAA010000118.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8129)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8129)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8129
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.118"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1671
                     /locus_tag="U0342_002103"
     CDS             <1..1671
                     /locus_tag="U0342_002103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2423446.1"
                     /translation="VKAAQDVVNIPDPVLKSYLNGLLGQSSTSDITEAQMDTITNVTI
                     SNSSLTDLTGLDYAHNLTILHLSNTGVTDYALVAKIPSLTNLSIAGDNLTNDSLPDLN
                     NLSNITNLNLSPGKLDNNALTKFNKMSKLSYLNLDSNPSITNIMPLKSIPNLATLFVQ
                     FCGINDFRGIDTFPKLVSLSAYGQNVGRTVLINSSIKSSALNFDEANQTIFVPFTLMT
                     ERGVNFDGYLFPFTTNTSSASTYFTLNETKIDGSRLTIDDKGITVSGITKSYFDTITK
                     MEYNALYNNPAGSYQTPPNFNNYSVSGGSYDHYFDIDHTLTITNDSAISYGEQTTVTE
                     EQFLKDVHAETDDGTPVTSDFNTVVDFSKPGVYTVTLNAENAAGLKATPTQVTVTILA
                     KPVITADKSISYTKDSTKTDQQFLQDISAKTSDGSKVTSDFDSVVDLAKVGTYKVTLN
                     AVSADGLNADPVIVLVNVVEGNEPPTPPAPGPDPTPGPTPNPNNPNINPNPDNGQSAN
                     SENASNPSNSEVNAALPNTGDASQATTVLIGIIIAGVAILFFRQRKHS"
     gene            complement(1714..2013)
                     /locus_tag="U0342_002104"
     CDS             complement(1714..2013)
                     /locus_tag="U0342_002104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724352.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM2423447.1"
                     /translation="MYQSITANDLEQDLKKASHNILDVRDADAFVEGHIPDAINIPIN
                     ELPEKLASLDKEKPYTIICYAGGRSERASQFLAAEGFDVTNVMGGMGAFHGIVTK"
     gene            complement(2130..3947)
                     /locus_tag="U0342_002105"
     CDS             complement(2130..3947)
                     /locus_tag="U0342_002105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464135.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423448.1"
                     /translation="MSGPGPGGGMRMQTTAKPKNFKQTLFRLLGYMKPRSVAIIVVFI
                     FAILSTIFNIFSPKELGKATTEIFKGVMSPAGIDNDKIFNILMIVLVLYLGSSLFSFI
                     QQYVMSSVAQRTVYDMRKDLKAKMARLPLKYYDTRSNGDILSRSVNDMDNIANTLQQS
                     LTQAITAIVQMIGVLIMMLTISWQMTLIVLVTVPISIILVAIIAGRSQRYFGAQQRNL
                     GILNDTVEETYGGQTIIKAFGQEKKTLVKFDEVNEDYFKAAKKAQFISGIMMPVMQFV
                     GNLGYVGVCVAGGIFVTNGTLQVGDIQSFTQYVQLFTQPISSVANIANIIQSTIASAE
                     RVFEMMDEEEEKDEIPANVNQVAGEEHSIVFDHVKFGYTPDKPLMTDLNIHVEEGQMV
                     AIVGPTGAGKTTIINLLMRFYDVDGGQIRMKGIDTRDMTKDAVREKFGMVLQDTWLFN
                     GTIADNIAYGREGATKEEVIGAAKAAYADDFIRRLPNGYDTVLNEEGSNISQGQKQLL
                     TIARAILSDPSILILDEATSSVDTRTELNIQLAMGNLMEGRTSFVIAHRLSTIRDADL
                     ILVMNHGSVIEQGTHQELLDAKGFYADLYNSQFTGAQAV"
     gene            complement(3944..5668)
                     /locus_tag="U0342_002106"
     CDS             complement(3944..5668)
                     /locus_tag="U0342_002106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003735787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423449.1"
                     /translation="MMKLMKRLKPYWLSITAVLVLTFGQVIGQLYLPTLMSNIIDKGV
                     VTGDTDYIWSTGMQMLLISFASVILSVIVVYLASRISMGFGKDLRDKIFTKVEDFSLQ
                     EFDKVGTSSLITRTTNDVVQIQNVLYMMMRLMVMAPIMLLGGIIMAVGRDAKLSLIFV
                     VVLPLLLLLVVILGGKAMPMFKSLQKKMDKLNRVIREGLTGIRVVRSFNRNEDELEKF
                     EEANADYATTAIKVNRLLSLMSPLMMLLMNLTSIAIVWIGSIFIGNGDMQVGDLMAFI
                     QYAMQIMMSFMMLSAVFIMIPRAGASAERINEVLDMNAEILNPENPKTSAPPAKLSFE
                     HVTFRYEGAEKPVIEDITFEANAGETVAIIGSTGAGKSTLINMIPRFYDVESGVVKIN
                     GIDVREMDQSSLRQKIGLVPQKAVLFTGTIASNMRYGKEDATDEEIWAALRTAQAENF
                     VSKLANGLGSRVEQGGNNFSGGQKQRLSIARSLIRKPEIYIFDDSFSALDFKTDAKLR
                     EALKAETTEAVTLIVAQRITSVVNSDQIIVMNEGKIAGIGTHEELKETNQIYQEIMRS
                     QLSEEEIA"
     gene            complement(5676..6137)
                     /locus_tag="U0342_002107"
     CDS             complement(5676..6137)
                     /locus_tag="U0342_002107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2423450.1"
                     /translation="MSSKNQDLGHSVIKAFMNFKHAEIKSFQIPGYSKSETRFIFILS
                     RGLKSRGPKIRVSDLGHMLRISKPSVTQMIQSLEGKGLIKRVQNPEDKRSMYVELTEV
                     GAGVSEKMLDEFQASFEDMQEFLGEDDMKKLITLLEKLTDYLNTKSENKEA"
     gene            6303..7643
                     /locus_tag="U0342_002108"
     CDS             6303..7643
                     /locus_tag="U0342_002108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464132.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MATE family efflux transporter"
                     /protein_id="HEM2423451.1"
                     /translation="MSSVHKVASISLFTLAWPIFLEQFLRLMISYIDVFMLGHYSDDA
                     VAATGVANQILVISIIIYGFISVGVQIIVAQMIGAKKHKEIENVITNGLVVAFLIGIV
                     MSIIFIFMSKNFLTWMGIDPHLVQVGAPFLEIIGGSSVVIAIHASILPILRAHGYVRQ
                     SILVPVTISIINVVGNYLFLYGPLAYLDYGVAGVGISTAVANFVGMGLAIWMLRKYIG
                     YTFHFKKLEQVSKKLLYSILRLGLPSAGENLSYAGSQLVVTAIIAILGTEALTTKVYA
                     STVSQFVALFAIALGQASQIIIGRAVGAKEIDKAYKQGLRSWKIGLVVAIVVSVSIYL
                     FAEPIMSLFTTNTEIIAMTKELFLLSIFLELGRATNIIIISSLNSTGDVRFPFICGLI
                     VMWIVSLPFSYVLGISAGLGLVGVWLAYIIDEGVRAVLMYRRWRSKVWSLKSVI"
     gene            7792..>8129
                     /locus_tag="U0342_002109"
     CDS             7792..>8129
                     /locus_tag="U0342_002109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464131.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4870 domain-containing protein"
                     /protein_id="HEM2423452.1"
                     /translation="MLDKKIISALSYFSLFFAPVITPAIIWCTTKDKEIRHHVRWALL
                     TQTTFVAGVVVMILLYNNVPFSTNSADTINFLALATVFFIVFLNVSILIFNLIRGITR
                     IVKHSDDNWA"
BASE COUNT         2390 a         1653 c         1474 g         2612 t
ORIGIN      
        1 gtaaaagccg ctcaagatgt tgtcaacatt cctgacccag ttttgaaaag ttatttaaat
       61 ggactcttag gacaatcaag cacaagtgat attactgaag ctcagatgga tactattaca
      121 aatgtcacta ttagtaacag tagtttaact gatttaacag gtcttgatta tgcacataat
      181 ttaacaattt tacatttgtc taatacaggg gtaacagatt atgccttagt cgcaaaaata
      241 cctagcctaa ctaatcttag cattgccgga gataacttaa caaatgattc attacccgat
      301 ttgaataatt tatcaaacat caccaactta aatctaagtc ctggtaagct cgacaataat
      361 gcactaacta aatttaataa aatgtccaag ttaagttact taaatttaga cagtaatcct
      421 tctattacta acatcatgcc actaaaatcc attccaaatt tagctacttt atttgtccag
      481 ttttgtggaa ttaatgattt ccgtggaatt gatacttttc ctaaattagt gagtttatcg
      541 gcttacggac aaaacgtagg tagaaccgtt ttaatcaaca gctctatcaa aagctctgca
      601 ttgaattttg atgaagcaaa ccaaactatc tttgtgccgt ttactttaat gactgaacga
      661 ggagtaaact ttgatggcta tttgttccct tttacaacta atacaagttc tgctagcacg
      721 tatttcactt taaatgagac caaaattgac ggtagccgtt taaccattga cgataaagga
      781 attacggtaa gtggaattac caaaagttat tttgatacga ttactaaaat ggaatacaat
      841 gcattataca ataaccccgc cggatcgtat caaactccgc caaatttcaa taattattcc
      901 gtatcagggg gaagctacga ccactatttt gacatcgatc atacactaac cattacaaat
      961 gattcagcaa taagttatgg ggaacaaacc acagttacag aagaacaatt tttaaaagat
     1021 gttcatgctg agacagatga tggaacgcct gttactagtg attttaatac ggttgtagac
     1081 tttagtaaac ccggtgtcta cacggtgaca ttaaatgccg aaaatgctgc tggtttaaaa
     1141 gcaacgccaa cacaagtaac ggtgaccata cttgcaaaac cagtcataac agcagataag
     1201 agcatttctt acacgaaaga ttcaaccaag acagaccagc aatttttaca agatatttca
     1261 gcaaaaacaa gtgatggtag taaggtaacg agtgattttg atagcgttgt tgatttagcc
     1321 aaagtcggaa cgtataaagt gactttaaat gcggtaagtg cagatggact aaatgctgac
     1381 ccagttattg ttttagtaaa tgtggtagag ggaaatgaac ctccgacacc acctgctccc
     1441 ggccctgatc ccacaccagg tcctacgcca aatcctaata atccaaatat caatcccaac
     1501 ccagataatg gacaatctgc gaactctgaa aacgcatcaa atccgtctaa ctcagaagta
     1561 aatgccgctt taccaaacac tggcgacgcg agtcaagcaa ctactgtgtt aattgggatt
     1621 atcattgccg gagtagctat cctcttcttc cgtcaaagaa aacatagcta aataaaaaag
     1681 tcgtgactag aattttagtc gcgacttctt tttttattta gttactatac cgtgaaaggc
     1741 tcccatacct cccattacat tcgttacatc aaagccttct gcagctaaaa attgactcgc
     1801 gcgctcagaa cgacctccag cataacagat aattgtataa ggtttctctt tatcaagaga
     1861 agctaatttt tctggtagtt cattaattgg aatatttatt gcgtccggaa tgtgtccttc
     1921 aacaaaagca tctgcatctc tgacatctaa gatattatgt gacgcttttt ttaagtcttg
     1981 ttctaaatca tttgcagtaa tggattgata catctatttt cacctcttca atttcttctt
     2041 tattaaccat aacgcctaat ccaccatcaa acaaattttt tgctcaaaaa aagacaatgc
     2101 ggcgggtgag ccacattgtc ttcttacatt taaacggctt gagctcctgt gaactgactg
     2161 ttgtaaaggt cagcgtagaa gccttttgcg tccagtagtt cttggtgcgt accttgttcg
     2221 attacactac cgtgattcat cacgagaatt aagtctgcat cacgaatagt tgaaagtcta
     2281 tgcgcaatca caaagcttgt gcgcccttcc atcaaattac ccatcgcaag ttgaatgttt
     2341 aattctgtac gagtatctac gctagaagtc gcttcatcta gaatcaagat agatggatca
     2401 gataaaatcg cacgggcaat cgttagtaat tgtttttgac cttgcgaaat gttagaacct
     2461 tcttcattca agacggtatc ataaccattt ggaagtctgc gaatgaaatc atctgcataa
     2521 gctgcttttg ctgctccgat gacttcctct ttcgttgcgc cttcacgacc gtatgcgata
     2581 ttgtcggcaa tggttccgtt aaataaccaa gtatcttgca gtaccattcc gaatttttcg
     2641 cggacagcat ctttggtcat atcgcgtgta tcaatacctt tcatccggat ctgcccacca
     2701 tctacatcat aaaaacgcat cagcaagttg ataatggttg ttttaccagc accagtcgga
     2761 ccaacaattg ctaccatctg gccttcttcc acatgaatat ttaagtcagt cattagaggt
     2821 ttatccggag tgtaaccgaa tttcacgtgg tcgaatacaa tgctgtgttc ttcgccagca
     2881 acttgattaa cgttagctgg aatttcgtct ttttcttctt cttcatccat catttcaaat
     2941 acacgttccg ccgaagcaat agtggattga atgatgttag caatatttgc cacacttgaa
     3001 attggttgcg taaataattg aacatattgc gtaaatgatt gaatatcccc cacttgaagc
     3061 gttccattag taacaaaaat accaccggcc acacagacac cgacatagcc taagttacca
     3121 acaaattgca tcaccggcat cataatcccg gaaataaatt gcgctttttt cgctgctttg
     3181 aaataatctt catttacttc atcaaatttt actaacgttt tcttttcttg accaaaggct
     3241 ttaataatcg tttggccacc gtaagtttcc tctacagtat catttaaaat acctagatta
     3301 cgttgttgtg cgccgaagta acgttgtgat ctaccagcaa taatggcgac taaaataata
     3361 ctgattggaa ctgtcactag aacgattaat gtcatttgcc agcttattgt tagcatcatg
     3421 attaaaacac caatcatttg gacaatcgcg gtaatagctt gggttagtga ttgttgcaaa
     3481 gtgtttgcga tattatccat atcattaaca gaacgactta gaatatcacc atttgagcgt
     3541 gtatcataat atttcagcgg caagcgagcc attttcgcct ttaaatcttt ccgcatatca
     3601 taaacagttc gttgcgcaac actcgacatg acgtattgct gaatgaaact aaataaggaa
     3661 ctaccaaggt ataagactaa aacaatcatt aatatattga aaatcttatc gttatcaatc
     3721 ccagccggac tcataacacc tttaaaaatt tccgttgttg ctttcccgag ttctttcggg
     3781 ctaaaaatgt taaaaatcgt ggataaaatc gcaaagataa acacgacgat gattgcgaca
     3841 gaacgaggtt tcatatagcc aagaagccgg aatagtgttt gtttaaagtt ctttggtttg
     3901 gcggtcgttt gcattctcat gccaccacct ggacctggac cactcatgcg atttcctcct
     3961 ctgacagctg tgacctcata atttcttgat aaatttgatt cgtttctttc aattcttcat
     4021 gtgttccaat tccagcaatt ttaccttcat tcataacaat gatttggtcg gaattgacaa
     4081 cagaggtaat acgttgtgcc acaatgagag tcacggcttc ggttgtttca gctttcaaag
     4141 cctcacgcag tttcgcatcc gttttgaaat cgagcgccga gaaactatca tcaaaaatat
     4201 aaatttctgg ttttctaatt aaagaacgtg cgatggaaag acgttgtttt tgtcctccag
     4261 agaagttgtt cccgccttgt tctacgcggc ttcctaaacc atttgcaagt ttagatacaa
     4321 agttttccgc ttgagctgtt cgaagtgctg cccaaatttc ttcgtcggtt gcatcttctt
     4381 ttccgtagcg catattagaa gcaattgttc ctgtgaatag aaccgctttt tgcggcacaa
     4441 gaccaatttt ttggcgcaaa ctggattgat ccatttcacg cacgtcaatt ccattaattt
     4501 ttacaacacc actttcgaca tcataaaaac gtggaatcat attaatcaaa gtagacttac
     4561 cagcaccggt acttccgatg attgcaactg tttccccagc attagcttca aaagtaatat
     4621 cttcaattac tggtttttca gcgccttcat agcggaaagt aacatgttca aaagaaagtt
     4681 ttgctggtgg tgcacttgtt tttggatttt cagggttaag tatttctgca ttcatatcta
     4741 aaacttcatt aatacgctca gcagaagctc cggcacgtgg aatcataata aatacagcag
     4801 aaagcatcat gaaggacatc ataatttgca tcgcgtattg aataaacgcc atcaagtccc
     4861 ctacttgcat atcaccattg ccaataaaaa tcgaaccaat ccagacaatc gcaatggaag
     4921 ttaagttcat cagtagcatc attaatggac tcataagaga tagcagtcgg ttaactttaa
     4981 tcgccgtagt agcatagtca gcgtttgctt cttcaaattt ttcgagttca tcttcattgc
     5041 ggttaaagga acgcacaaca cgaatcccgg ttaacccttc acgaataacg cggtttaatt
     5101 tgtccatttt cttttgaagt gatttaaaca tcggcattgc ttttccgcca agaataacta
     5161 ctaatagaag tagtagcggt aaaacaacga caaaaataag cgataatttc gcgtccctgc
     5221 caactgccat aataataccg ccgagcaaca taattggcgc catcaccatt aatcgcatca
     5281 tcatataaag tacattttgg atttgaacaa cgtcatttgt cgttctagta atcaaggaag
     5341 aagttcctac tttatcaaat tcttgtaagg aaaagtcctc tacctttgta aaaattttat
     5401 cgcgtaaatc tttcccgaat cccatcgaaa ttctggatgc gagataaacg acgatgaccg
     5461 acaaaataac tgaagcaaat gatataagta acatttgcat tccagtgctc caaatgtagt
     5521 ctgtatcgcc tgttacaact cctttgtcga taatgttcga cataagcgtc ggtaaataaa
     5581 gctgtccaat gacttgcccg aaagtaagga ctaatacggc cgtaatgctc agccaataag
     5641 gttttaatct tttcatcaat ttcatcattt gcggtttatg cctccttatt ttcggatttt
     5701 gtgtttaagt aatctgtcag tttttctagg agtgtaatca attttttcat atcgtcttcg
     5761 cctaaaaact cctgcatatc ttcaaaacta gcttgaaatt catcgagcat tttttctgac
     5821 acgcctgctc cgacctctgt taattccaca tacatcgagc gcttatcttc tgggttttga
     5881 acacgtttaa tgagtccttt tccttccaaa gattgaatca tttgcgtgac gcttggtttt
     5941 gaaattctaa gcatgtgacc aagatcggaa acacgaattt ttggccctct gcttttaagc
     6001 ccacgagata aaataaaaat aaatcttgtt tcagatttac tgtaaccggg aatttggaaa
     6061 ctctttattt cagcatgctt aaaattcatg aaagccttga ttactgagtg ccccaagtct
     6121 tgatttttcg aagacatttc tccacttctt tccatcattt gattagttta cctaactaat
     6181 tatatgagat attcgatttt tgtcaagcga tatcttggag cgattttgaa attaatctat
     6241 acttttaact ttaattacct tataatggct ttaattgtgt taatgcgaag ggagggaaat
     6301 aagtgagttc agtacataaa gtcgccagca taagtctttt tacgcttgct tggccgattt
     6361 ttctagagca atttttacgt ctgatgatta gttatattga tgtctttatg ttggggcatt
     6421 attcagatga tgcggtagct gcgacagggg tagcaaatca gattcttgtt atttctatta
     6481 ttatttacgg ctttatcagt gttggcgtac agattatcgt tgcccaaatg attggtgcca
     6541 aaaaacataa agaaattgaa aatgtgatta caaatggctt agtggtcgct ttcttaattg
     6601 gaattgtgat gagtattatt ttcattttta tgtcgaaaaa cttcctgact tggatgggaa
     6661 ttgatcctca tttagttcaa gttggtgcac cgtttttaga aattatcggt ggaagctcgg
     6721 ttgttatcgc tattcatgct tcgattttgc ctattctccg ggcgcatggt tacgtaagac
     6781 aatccattct tgttcctgtg acgattagca ttatcaatgt tgtcggtaat tacttattcc
     6841 tgtacggccc gcttgcatac ttagattacg gggtagcagg tgttggtatt tccactgctg
     6901 tcgcaaactt cgtcggaatg ggtctagcca tctggatgct gcgaaaatat atcggctata
     6961 ctttccattt caaaaaactg gagcaagttt ccaaaaaatt actttattcg attttacgac
     7021 ttggccttcc ctctgctggg gaaaatttat cgtatgccgg ctcgcaacta gttgttaccg
     7081 caattattgc gattcttggt acagaggcgc ttaccacaaa agtttatgct tcgacggtta
     7141 gccagtttgt cgcactcttt gctatcgcgc tcggtcaggc ctctcaaatt attatcggtc
     7201 gcgcggttgg tgcaaaagaa atcgataaag cttataagca aggtctacgt agttggaaga
     7261 ttggtttggt tgtcgcaatt gtggtcagcg tttcgattta ccttttcgcg gaaccaatta
     7321 tgagtttatt tactaccaat accgaaatca ttgcgatgac gaaagaattg ttcttacttt
     7381 cgattttcct agaacttgga cgtgcgacga atattatcat tattagcagt cttaactcaa
     7441 caggcgatgt tcgttttcca tttatatgcg gacttatcgt tatgtggatt gttagtttgc
     7501 cgttctccta tgtacttggt atctctgctg gtcttgggct tgtaggggtt tggctcgcct
     7561 atattattga tgaaggcgtt cgagctgttc taatgtaccg aagatggcgc agtaaagttt
     7621 ggtccctaaa atcagtcata taaagaaacg tctctttgat tttttcgaag aggcgttttt
     7681 gtatatgaca aaactgtcat cttcctctgt atatcgtcac ctaattcgat ggttccattt
     7741 ctctttcccc gctatactag acttataaac aaatgagagg atagatgaga aatgttagat
     7801 aaaaaaatta ttagtgcgct tagttatttc agtcttttct ttgccccggt cattactccc
     7861 gcgattatct ggtgtacaac aaaagataaa gaaattcggc atcatgtaag atgggcactc
     7921 ctcacacaga caacttttgt cgctggtgta gttgtaatga ttttacttta caacaatgtt
     7981 ccatttagta ccaatagtgc agataccatt aactttcttg ccttagctac tgtatttttt
     8041 atcgtttttc taaatgtatc gatactcatt ttcaacttga ttcggggaat tacacgtatc
     8101 gtaaagcata gtgacgataa ttgggctag
//
LOCUS       DASEAA010000119         8113 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.119, whole genome shotgun sequence.
ACCESSION   DASEAA010000119 DASEAA010000000
VERSION     DASEAA010000119.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8113)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8113)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8113
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.119"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            131..1255
                     /locus_tag="U0342_002110"
     CDS             131..1255
                     /locus_tag="U0342_002110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465171.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exonuclease SbcCD subunit D"
                     /protein_id="HEM2423453.1"
                     /translation="MKFLHTADLHLGKIVSGVSMLAEQEYILAQITKIAEEEQVDALI
                     LAGDLYDRAVPPADAVKVLNDILVKWNVELGIPIFAISGNHDSAERLAFGSQWYESSK
                     LYMKGKCTSQFEAISFMDAEVWLVPYHEPAIIREAFADNSIRSFEDAMQAVTKQIRSK
                     WDTSKAQILVGHAFVSGGIPSDSERQLAIGNVDRVSTDCFDGFTYTALGHLHHPHAIR
                     HPSIFYSGSPLKYSFSEANDHKSVRIVELEGKELVSVTERFLTPKHDMRIISGTLAEL
                     TENLVENPDDFFQVNLMDEGALIDPMGKLRQFYPNILHLERKKQTLKETQDNFEEIMK
                     KDDLELFGQFFEHVNGTELTETQKQKLADVFEQARKEDAE"
     gene            1252..4323
                     /locus_tag="U0342_002111"
     CDS             1252..4323
                     /locus_tag="U0342_002111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465170.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMC family ATPase"
                     /protein_id="HEM2423454.1"
                     /translation="MRPIKLTMQAFGAYAKKEVIDFEKLGTEQIFVISGKTGAGKSTI
                     FDAISFAIFGKANTFDRESFSMRSHFATDKEITEVTLAFRLKDKIYQISRIPQQEIAK
                     QRGNGTTTSPQKAELYELIGDEMKLLASSVRDVNAKMEELIQLNVDQFRQILMIPQGE
                     FRELLVSDSKEKEVILQRLAHTAYYEKVENLLWEKQKQAEILVVEARKKVAELAELSL
                     PDGEVSGKTTSEISVLQNEAIQKEQAILTELENKLSIIRKQTSEAVEKVTLAKEQLLD
                     WQNLDKYTEEVATLEAEKDFYQTIEVRMEAAKRASNLQSQDALCIRLKEQLETAEQTE
                     KQVALEAEQVKAQFSHAKKQKEALAEKEAELEINKRTLFQLEEMEPKILELETVLIQK
                     RRAELDWKKTTTLLEKIIDKEQKIATELQSVEARLAEINKAELMYLEVINKRTTLEAR
                     IEKEQELVNKRIKMEEWAAAKQTEEQTLAQLLIEKAEMERTIKQEETKLEKEQTATIA
                     AHLHEGDACPVCGSQSHPILAKFGETADLETLEIAKAKLQEKQLVITTTEKAISQLEW
                     QLNEWADMKEQSLAEIQQTLAENIQLATNLREQITQLQSEVAQKETVQATLESLKNRQ
                     NETLTEKNKMALEVEKLHQQVQLTEGKRTYLEQSIPDELRDKAVFDNKMKELSSKIET
                     HIKQAEQIDALFRQAEKETTRLESTLHSAQKTTVDAKEALQVQREIFKEAMKQNDFLS
                     YDAYKQALLSVEELKNLEEKLAEYERKRHLAVSRQADLKEKLQNKQKPNMEQLEFIMK
                     EKQLELSQSEENTMKQREFVAKRKELVENYQNSIQAVEQAEENYADIGLLADAARGKN
                     ARRLTFERYILAMFLDTIIHRANHRLSKMTSGRFELQRKMEKAKGNVQSGLELEVFDE
                     YTGLTRHVKTLSGGESFKTSLALALSLAEVVQEMAGGISLETMFIDEGFGTLDPESLE
                     AAVECLLETQENGRLVGIISHVPELKERISARLEVTATNHGSTTKFITASS"
     gene            4407..7625
                     /locus_tag="U0342_002112"
     CDS             4407..7625
                     /locus_tag="U0342_002112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465169.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2423455.1"
                     /translation="MEHFTAIQNKMIPYSVKQAGKKLMEDGEIIQFREKDASDHFSTY
                     FIDQNVVEDAGNENYACSCADFQLNAICKHIYATHLKMEKEKQKAAKQDFKNRILTQE
                     SNTLLSLFQQNMAQQLEVEEDNTNKTPLQTQYIIRLKPDDSSYIMTIEVKVGTERTYV
                     VKNMNTFLAAIRDRQWLVFTKNFAYDPNEHFFLEEDKQILDKLLQISEIAKMYDTDSF
                     YWSKSYAEEKNLTIPPSMASDLLELLTERDTTCIIMKERVEDIKYRGINVRHDNLDFI
                     FELKKSAEDKYQLEMEDLQQAIFFEAYQLLFFDGTFFIPAKEVWESLKPLMEFHKVTK
                     NEVVQFSESQLSEVISYVLPALQKSGKLKLDDSIEDRITQQPLDCKLFIALEYGEHTL
                     RLEYHYGNQLFDPFATSEEENEKIMIRDVEKEARVMNIIESAPVHFSGTKMVVNKQEK
                     DLYQFYYRTIPKLAEYAEIYMEDGLEEMVEENVRPVTTLDVSGDNDYLSVSFDFKGIP
                     EEEVQNVLESLREKRSYHRLKSGRFLSLESENYKQMEDVLQMLEVRKKDVQANMQVPL
                     YRGMQIYDILGAGTQDEHHKFSRSFRELLTDITTQSEDSFALPKGLKAELRDYQLTGF
                     EWMKSLAKYNLGGILADDMGLGKTVQTISFLASELEDNPNLKPVLIITPASLLYNWQS
                     ELEKFAPTIPVTVLHGTKQSRIAEMEEMKHGHVYLISYPSLRQDIVHFADVAFSSVII
                     DESQAIKNYHTKASQAVRALKRNHVFALSGTPLENSIDELWAIFQTLMPGFFPSLRKF
                     KEIPYDNIAKMIRPFLLRRLKQDVVKELPDKIETNLYSELTDEQKTIYLAYLEKIQAD
                     LEASNGNASEERIKLLAGLTRLRQICCDPSLFVENYQGESGKLLQLFDTIQTARENGK
                     RILLFSQFTGMLGIIRQKLEEDGQTLFYMDGKTPSKTRLDMVNAFNEGENDIFLISLK
                     AGGTGLNLVGADTVILYDLWWNPAVEEQATGRAHRIGQKRVVQVFRMITKGTIEERIF
                     DLQKKKQALVDELIQPGEQMLGKLSTEEIKQILQLDNGRDDK"
     gene            7625..8047
                     /locus_tag="U0342_002113"
     CDS             7625..8047
                     /locus_tag="U0342_002113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465168.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein"
                     /protein_id="HEM2423456.1"
                     /translation="MKKWEVFAVQNVEAAEEIINKLVSEGYEKEDISVLAKSKHNKNL
                     ETLAEKENIEIERPVNEEAFGIISGILQSLSGAIVIPQAYNPKYGALYAAGPFAKWFS
                     KTDDKSVKRLLEDFDLTEKQVDKMIENLHADNILIFAR"
BASE COUNT         2988 a         1403 c         1678 g         2044 t
ORIGIN      
        1 gaaatgataa aacaacttct tcactcccag tattgctagt tattttttta aactatatct
       61 agtatactta aaattgacga gttttgcatt aaaaataaat aatctctgag aaaaagaaat
      121 gaggtaaccg atgaaatttt tacatacagc tgatttgcat ttaggaaaaa ttgtatctgg
      181 cgtatcgatg ctagcagagc aagaatatat tttggcacaa ataacgaaga ttgccgagga
      241 agaacaagtc gacgcactta ttttagcagg agatttatat gaccgcgccg tgccgcctgc
      301 ggatgcggtg aaagtgctaa atgatatttt agtgaaatgg aatgtagaac taggtattcc
      361 gatatttgcc attagcggga atcatgacag tgcggagcgg cttgcttttg gaagtcagtg
      421 gtatgaaagt agcaagttgt atatgaaagg aaaatgtacc tcgcagtttg aagcgatttc
      481 ttttatggat gccgaagtgt ggcttgtacc atatcacgaa ccagcaatta ttcgggaagc
      541 ttttgcagat aattcgattc gcagttttga ggacgctatg caagccgtga cgaaacaaat
      601 tcggtccaaa tgggatacaa gcaaggcgca gattttggtt ggacatgcgt tcgtttctgg
      661 cggtattccg agtgattccg aacgacaact agcaattgga aatgtggacc gtgtttctac
      721 ggattgtttt gatggtttta catatactgc actcgggcac ttgcaccatc cgcatgcgat
      781 tcggcacccg tctatctttt atagtggatc tcctttaaag tattcatttt cagaagcaaa
      841 tgatcacaaa agcgtgcgga ttgtggaact ggaaggaaaa gaactggtta gcgtgacgga
      901 gcgctttcta acaccaaaac atgatatgcg cattatttct ggaacactag cggaactgac
      961 agaaaactta gtagaaaatc ctgatgactt ttttcaagtg aatttaatgg atgaaggtgc
     1021 tttaattgat ccgatgggga aattacgcca attttatccg aatattttac atttagaacg
     1081 taaaaaacaa acattaaaag aaacgcaaga taactttgaa gaaatcatga aaaaagatga
     1141 tttagagcta tttggtcaat tttttgaaca tgttaatggg acagaattaa cggaaacaca
     1201 aaaacaaaag ttagcggatg tttttgaaca agcgaggaag gaggatgcgg aatgagaccg
     1261 attaaattaa cgatgcaagc ttttggagcc tatgccaaaa aagaagtcat tgattttgaa
     1321 aagcttggaa cggagcaaat ttttgtgatt tctggtaaaa caggagctgg gaaatcgaca
     1381 atttttgatg cgattagttt tgcaattttt gggaaagcga acacatttga tagggaaagt
     1441 ttttcgatgc gaagtcattt tgcgacggat aaagaaataa cggaagtaac gctagctttt
     1501 agattgaagg acaagattta ccaaattagc cgcattcctc agcaggaaat tgccaaacaa
     1561 cgcggaaacg gaacaaccac ttcgccgcaa aaagcagaat tatatgagtt gattggtgac
     1621 gaaatgaagt tgcttgcaag ttccgtgcgc gatgttaatg caaaaatgga agaattaatt
     1681 caacttaatg tggatcagtt tagacaaatt ttgatgattc ctcaaggcga atttagagaa
     1741 ctgctcgtat cggatagtaa agaaaaagaa gtcatattgc aacggttagc gcatactgct
     1801 tactatgaaa aagtggaaaa tttgttatgg gaaaagcaga agcaagccga aatcttggtt
     1861 gtagaagcgc gtaaaaaagt agcggaactt gctgaactta gtttaccgga tggggaagtt
     1921 tctggaaaga caacgagtga aatcagcgtg ttgcaaaacg aggccattca aaaagaacaa
     1981 gcaattttaa cggaattaga aaataaatta agtattattc ggaaacaaac aagtgaagct
     2041 gttgaaaaag tgacgcttgc gaaagaacaa ctgcttgatt ggcaaaattt ggataagtat
     2101 acagaagaag ttgcgacact agaagcggag aaagattttt atcaaacaat agaagttcgc
     2161 atggaggctg cgaaaagagc aagcaacctt caatcccaag atgcactttg tattcgttta
     2221 aaagaacaat tagaaacagc cgaacaaaca gaaaaacaag tagcacttga ggcagaacag
     2281 gtaaaagccc aattttcaca tgcgaaaaaa caaaaagaag ctcttgctga aaaagaagca
     2341 gaattagaaa taaacaaacg aacacttttc caattagaag aaatggaacc gaaaatattg
     2401 gaattagaaa cagtcttgat ccaaaaaaga cgcgccgaat tagactggaa aaaaacaacg
     2461 acccttttag aaaaaataat cgacaaggaa caaaaaatag ccacagaact gcaatcagtt
     2521 gaggcgcgat tagcggaaat aaacaaagcc gagctcatgt atttagaagt tattaacaaa
     2581 cggacaacat tagaagccag gatagagaaa gaacaagaat tggttaataa acggataaaa
     2641 atggaggagt gggccgcagc caaacaaact gaagaacaaa cattagcaca acttttaata
     2701 gaaaaagcgg aaatggaaag aacgattaaa caagaagaaa caaaactaga aaaagaacaa
     2761 acggcaacaa tcgcagcgca tttgcatgaa ggagatgctt gtcctgtctg tggttcacag
     2821 tcacacccaa tactcgcgaa atttggagaa acagctgacc ttgaaacact cgaaatagca
     2881 aaagcaaagc tacaagaaaa acaattagtg attactacga cggaaaaagc tatcagtcaa
     2941 ctcgaatggc aacttaatga atgggcagat atgaaagagc aaagtttagc cgaaatacaa
     3001 caaacattag ctgaaaatat ccaactagct actaatctga gagagcaaat aacccagttg
     3061 caatccgaag tagctcaaaa agaaactgtc caagcgacat tagaatcatt gaaaaacaga
     3121 caaaatgaaa cgctaaccga aaaaaataag atggctctcg aagtagaaaa gttgcatcaa
     3181 caagtgcaac taacggaagg gaaacgaact tatttggaac aatccattcc cgacgagttg
     3241 cgagataagg ctgttttcga taacaaaatg aaagaactaa gctcaaaaat cgaaacacat
     3301 atcaaacaag ccgaacagat tgatgcgttg tttagacagg cagaaaaaga aacaaccaga
     3361 ctagaatcca cgttacattc agcgcaaaaa acaacggtgg atgcgaaaga agccttacaa
     3421 gtacagcgcg aaattttcaa agaagccatg aaacaaaatg attttttatc ctatgatgcg
     3481 tataaacaag ctttgttatc agtagaagaa ctaaaaaact tagaagaaaa attggccgaa
     3541 tacgagcgaa aacgccattt agctgtatca cgccaagctg atttaaaaga aaaactccaa
     3601 aacaaacaaa aaccaaatat ggaacaacta gaattcatta tgaaagagaa acaactcgaa
     3661 cttagccaat cagaagaaaa tacaatgaaa caacgcgaat tcgttgcaaa aagaaaagaa
     3721 cttgtcgaaa actaccaaaa cagtattcag gcagtggaac aagccgaaga aaattatgcg
     3781 gatattggct tactagctga tgcagcgcgt ggtaaaaatg cccggagatt aacgtttgaa
     3841 cgatatattt tagcgatgtt tttagacacg attattcacc gcgccaacca ccgtttatcc
     3901 aaaatgacaa gcggtcgttt tgaactacag cggaaaatgg aaaaagcaaa aggaaatgtc
     3961 caaagtggct tagaacttga agtttttgat gagtatacag gattaactcg acatgtaaaa
     4021 acactttcgg gaggagaaag cttcaaaact tctttagcgc ttgcattatc actcgcagaa
     4081 gtcgttcaag aaatggcagg tgggatttca cttgaaacga tgtttattga tgaaggattc
     4141 ggtacgcttg atcctgaatc acttgaagcc gctgtagaat gcttactgga aacacaagaa
     4201 aatggccgct tagttgggat tatttcccat gtaccagaac taaaagaacg aatttccgca
     4261 aggctagaag taaccgcaac aaatcacgga agtaccacta aatttattac tgcaagtagc
     4321 taaaagaccg catgcgttgc cgtccctcgt cttttcctat ataatagtag tttagagtaa
     4381 tggacggttt tgggaggaag aaagtaatgg agcactttac agcaattcaa aataaaatga
     4441 tcccatatag tgtgaagcag gctggaaaga aactgatgga agacggagaa atcattcagt
     4501 ttcgtgaaaa agatgcatca gaccattttt caacgtattt tattgatcaa aatgtcgtag
     4561 aagatgcagg taatgaaaat tatgcgtgta gttgtgccga ttttcaattg aacgcgattt
     4621 gcaaacacat ctacgcaacc catctgaaaa tggaaaaaga aaagcaaaaa gcagccaaac
     4681 aagattttaa aaatcgaatt ctcacgcaag aatcaaatac acttctttcc ctttttcaac
     4741 aaaatatggc gcaacagctc gaagtagaag aggacaatac gaataaaacg ccactccaaa
     4801 cgcagtatat cattcgttta aaacccgatg attctagtta tatcatgact attgaagtca
     4861 aagttggcac agaacggacc tatgttgtaa aaaatatgaa tacattttta gccgcaattc
     4921 gcgacaggca gtggcttgtt ttcactaaga attttgctta cgatccaaac gagcatttct
     4981 ttcttgagga agacaaacaa attttggata aactactgca aatcagtgaa attgccaaaa
     5041 tgtatgatac agattctttt tattggtcca aatcttacgc agaagagaaa aacctaacga
     5101 ttccaccgag tatggcgagc gacttgttag aactactcac agaacgcgat acgacgtgca
     5161 ttattatgaa agaacgcgta gaagatatta aatatcgcgg tatcaatgtg cgccacgaca
     5221 accttgattt catttttgaa ctcaaaaaaa gtgcagaaga taaataccaa ctagaaatgg
     5281 aagacttaca acaagcaatc ttttttgaag cctaccaact tcttttcttt gacggtacct
     5341 ttttcatacc ggcaaaagaa gtatgggaat cgttgaaacc attgatggaa tttcataaag
     5401 taacgaaaaa tgaagtggtg caattttcag agtcgcaatt aagtgaagtc atttcctacg
     5461 tattaccagc cttacagaaa agcgggaagt taaagctgga tgactcgatt gaagaccgga
     5521 ttacgcaaca gccacttgat tgtaaattat tcattgcact cgaatacggg gagcatacgt
     5581 tgcgacttga atatcattat ggcaatcagc ttttcgatcc atttgcaaca tcagaagaag
     5641 aaaacgaaaa aatcatgata cgtgatgtcg aaaaagaagc ccgtgtaatg aatattatcg
     5701 aaagcgcccc tgttcatttt tctggaacaa aaatggtcgt caataaacaa gaaaaggatt
     5761 tgtatcaatt ttattatcgc accattccaa aactagcaga gtacgcagag atttatatgg
     5821 aagacggtct cgaagaaatg gtagaagaga atgtgcgccc agttacgaca ctggatgttt
     5881 ctggtgataa cgattatctt tctgtttcgt ttgatttcaa aggtattccg gaagaagaag
     5941 tgcaaaatgt cctagaatct ttgcgtgaaa aacgtagcta tcaccgtctg aaaagtggcc
     6001 gtttcttatc gcttgaatca gaaaactaca aacaaatgga agatgtactc caaatgttag
     6061 aagtgcgtaa gaaagatgtc caagcaaaca tgcaagtacc gctttatcgt gggatgcaaa
     6121 tttatgatat tttaggagca ggaacacaag atgaacatca taaattcagt cgttctttcc
     6181 gcgaattgct tacagatatt acgacgcaat ccgaagacag ttttgcgtta ccaaaaggat
     6241 taaaagcaga gttgcgcgat tatcaactaa ctggtttcga atggatgaaa tcacttgcga
     6301 agtataatct tggtggtatt ttagcagatg atatggggct tggtaaaacg gtgcaaacga
     6361 ttagttttct agcatctgag ttagaagata accctaactt aaaaccagtc ttaattatta
     6421 cgccagcatc actactttat aactggcaaa gcgaattaga aaaatttgcg ccaactattc
     6481 cagtgaccgt tttacatgga acgaaacaat cccggatagc cgaaatggaa gaaatgaagc
     6541 atggccatgt ctacttgatt tcgtatccat cgttacgcca agatattgtc cattttgcag
     6601 atgtcgcttt ttcaagtgtt attattgacg aatcacaagc tatcaagaat tatcatacga
     6661 aggcctctca agctgtgcgc gctttgaaac gcaatcatgt attcgcgctc agtggaacgc
     6721 cgcttgaaaa cagcatcgat gaactatggg ctattttcca aacattaatg ccaggatttt
     6781 tcccttcatt gcgcaaattt aaagaaatac cttacgacaa cattgctaaa atgattcgtc
     6841 cattcttact acgtcgacta aaacaagatg tcgtcaaaga actaccagat aaaattgaaa
     6901 ccaaccttta ttctgaatta accgatgagc aaaaaacaat atacttagct tatttagaaa
     6961 aaattcaagc tgatttagaa gcaagcaatg gtaatgcttc cgaagaacga atcaaattac
     7021 tcgcaggatt aacccgttta cgccaaattt gctgtgatcc gagccttttt gtggaaaatt
     7081 atcaaggtga atctggtaaa ttactacagt tatttgatac aatacaaaca gcaagagaaa
     7141 acggtaaacg cattctccta ttttcccaat tcacgggtat gcttggaatt attcgccaaa
     7201 aactagaaga agatggacaa acacttttct acatggatgg taaaactcca tcgaaaacaa
     7261 gactagatat ggttaatgct tttaacgaag gggagaatga tattttcttg atttccttaa
     7321 aagctggtgg aaccgggctc aatcttgttg gcgcggatac cgtgatttta tacgatttat
     7381 ggtggaatcc ggctgtagaa gaacaagcta ccggacgtgc acatcgaatc gggcaaaaac
     7441 gcgttgtcca agtgttccgg atgatcacta aaggaacgat agaagaacga atttttgatt
     7501 tgcaaaagaa aaaacaagcg ctagtggacg aactaatcca accaggcgaa caaatgctag
     7561 gaaaattaag cacagaagaa ataaaacaaa tcttacaatt ggataatgga agggatgaca
     7621 aataatgaaa aagtgggaag tattcgcagt tcaaaatgtc gaggcagcag aggaaattat
     7681 caacaaacta gtaagcgagg gatatgaaaa agaagatatt tctgttctag ctaaatcaaa
     7741 acataacaaa aacttagaaa ctttagcaga aaaagaaaat atcgaaatcg aacgtcctgt
     7801 aaatgaagag gctttcggta ttatttctgg aatcctccaa tctctaagtg gagccattgt
     7861 tattccacaa gcttacaatc ccaaatatgg tgctttgtat gctgccggtc cctttgccaa
     7921 atggttctcg aaaacagacg ataaatcggt aaaaagatta ttagaagact ttgatttaac
     7981 agaaaaacaa gtagataaaa tgattgaaaa tttacatgca gataacatct taatttttgc
     8041 gagataatat cggtgaaaaa ggagaagttt atgcaaatta aggaattttt gattagtcgt
     8101 cgttcagaat tag
//
LOCUS       DASEAA010000120         8091 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.120, whole genome shotgun sequence.
ACCESSION   DASEAA010000120 DASEAA010000000
VERSION     DASEAA010000120.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8091
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.120"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            102..425
                     /locus_tag="U0342_002114"
     CDS             102..425
                     /locus_tag="U0342_002114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464745.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2423457.1"
                     /translation="MTDAHTVCPKFESAFQLLGKRWTGLIINVLLTGPKRFKQVAAEI
                     PQMSDRVLAERLKELEEMDICLRQVYPETPVRIEYELTEKGKALQEVMLEVQCWADKW
                     VEVPN"
     misc_binding    518..747
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00230"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="T-box leader; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="tRNA"
                     /db_xref="RFAM:RF00230"
     gene            793..1845
                     /gene="pheS"
                     /locus_tag="U0342_002115"
     CDS             793..1845
                     /gene="pheS"
                     /locus_tag="U0342_002115"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit alpha"
                     /protein_id="HEM2423458.1"
                     /translation="MLEQLQTLKNEAETQINEASDLKTLNDLRVKYLGKKGPMTEIMK
                     QMGKLSAEERPKMGSLANEVRTALTEAISSKQQILETEAINEKLKSETIDVTLPGTAP
                     SIGTKHLLTQVIEEMEDMFIGMGYEIAEGPEVELDYYNFEALNLPKDHPARDMQDSFY
                     ITENTLLRTQTSPVQARTMEKHDFSKGPIKVICPGKVYRRDNDDATHSHQFTQIEGLV
                     VGENITFADLKGTLTVLAKTMFGEEREIRLRPSFFPFTEPSVEMDISCFKCGGKGCRV
                     CKGTGWIEILGSGMVHPNVLEMSGIDSTRYSGFAFGLGPERVAMLKYAVDDIRHLYTN
                     DLRFTKQFQSTETGEI"
     gene            1845..4253
                     /locus_tag="U0342_002116"
     CDS             1845..4253
                     /locus_tag="U0342_002116"
                     /EC_number="6.1.1.20"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phenylalanine--tRNA ligase subunit beta"
                     /protein_id="HEM2423459.1"
                     /translation="MLVSYNWVKEFFQDFPLTAEELGEAITRTGIEIEGVEELSASLK
                     NVVVGEVLSCERHPDAEKLNKCLVQTDETEPVQIICGAPNVAAGQKVIVAKVGARLPG
                     GLKIKRAKLRGEVSEGMICSLAELGFESKVVPKAYAEGIYVLPAHVETGVSAITLLGL
                     DDAILDMAITPNRADALSMNGVAHEVGAIIHQKPAQPTEPDVSEKGKADDFISVEVEN
                     PAETPYYAIKMVENIEIKESPLWLQTKLMKAGIRPHNNVVDVTNYINLLYGQPLHSFD
                     YDKIGSKKIVVRSAKEQEEITTLDGEKRTLQAGHTVITNGVEPIAIAGVMGGEFSEVT
                     ENTTTVALEGAIFSSSSIGKASRELYLRTEASIRYDKGSDAWKVEKALAHGGALIAEL
                     SGGTLVGGVVEVDNREKAVNKIETSLTRINRILGTAITLAEIETIFDRLGFVLEVKND
                     TLIIEVPTRRWDITIEADILEEVARIYGYDEIPVTLPATSTTGGLSDSQKARRVMRAY
                     LEGAGLNQALTYSLTSKKDATRLALSDEKTVALSMPMSEEHSHLRTSIVPQLIRSASY
                     NIARKNMDVALYEMGTVFYATEGDNLPIEQEHLAGLITGNWHTVDWQKTPKPVDFFVL
                     KGIVEGLVNKLGIKSELHWKQTEKEELHPGRTASLILEGQEIGYLGALHPAVEANYDL
                     KETYVFEINVAALLDATKEKVVYHPIPRYPEMTRDLALLVDKNTDHATISQVIQEHGG
                     KLLVDIELFDIFEGESLGENKKSLAYTLTFLDSERTLVEEDVQKATNKVIEALQEKLH
                     AIIR"
     gene            4414..5115
                     /locus_tag="U0342_002117"
     CDS             4414..5115
                     /locus_tag="U0342_002117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464748.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423460.1"
                     /translation="MTYVEMKDVSKYYQMGENVVTANDKITFGIKKGEFVVIVGPSGA
                     GKSTVLNILGGMDSASEGKIMVDGQDIAQYNAKQLTKYRRTDVGFVFQFYNLVPNLTA
                     KENVELAAQIAPNALDAETVLTQVGLSHRLDNFPAQLSGGEQQRVAIARALAKAPKLL
                     LCDEPTGALDYDTGKSVLKLLQETCRNTGTTVIVITHNTAITPIADRIIEINNAKVRS
                     IKENPEPMSIDDLEW"
     gene            5129..>8091
                     /locus_tag="U0342_002118"
     CDS             5129..>8091
                     /locus_tag="U0342_002118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423461.1"
                     /translation="MKRSALWKDIYREIWRSKSRFISIFMLIMLGVAFFSGLKATGPD
                     MLLTADNYFNKYELANFNVQSTYGLDETDKEALEDISGVAQVELGYTADTLMKDKNIV
                     TKLFSNSESDNLNQYKIASGRLPEKSGEIALDDNDLVHKNVKIGDEVTFVKSDGNKLT
                     NTLKKSTYKVVGFVSSPAYIQKSERGSSTVGKGKTDAFGVIPEQDFDLPEYTIANLTF
                     NNLAAKQAFSDEYVSTEEKDKKSVEKALADQPEKRLNKIKTKEQKKLDDATAEINKRK
                     AELQENEAKLANAKAQLEEGFSEYNAAKASYDAKIKHGEAEIANGEAERRSAKKQLDT
                     AKTQIDQGETALSQAEMELEEGRAAWEDANNLLNTANGYLRSAKSTLENALKQPDLTD
                     FELDRNSLTNSFQMLASELDLSSAERAEYENAMNQLLDDYENGNISDAEIREALNAAL
                     AQVGNAENEYQSARATLDAEKQKIEQGEQTLAAKKQELQQAKTAYQEGLAKYQAGLEK
                     ISQAKQQLADGKETGSTELQSALAKLNVGQAEYEKNLALFEKEKAKAEGKLASAEKEV
                     KIGQEKLDALKLPKYYVLDRNDNPGYSEYKENADRLTSLSTAFPIFFFLIAALVCLTT
                     MTRMVEEQRTQIGTLKAFGYSNGSIILKYLVYGSTASIIGSVLGILIGFQFFPNIIFN
                     AYKSMYEMPPVDIGFYWSYSLLSLFVALFCTTFTAYVACRAELRANAATLMRPKAPKI
                     GKRIFLERISFIWKRMNFTSKVTARNLFRYKQRMLMTVLGVAGCTALILTGFGLRNSI
                     SDIAKMQYGQIMKYDAAIYQDMSAPPAAKETFDEIMNDSNIKSKLAMSQTNIETVKSG
                     QSAQTTSIIVPKNLNELPDYIVLRDRASHTTEKLTDDGAIITEKLAKLFDVKPGDTIT
                     VKNAENDKFQIKVSAITENYAMHYIYMTKSYYQQVFKEKPTYNLDLLMLKDTSEKVES
                     NFAEKLTDSKAILNVT"
BASE COUNT         2892 a         1490 c         1660 g         2049 t
ORIGIN      
        1 tttggtcaat cgggccacaa cttactaaat ataagcaaca taatatttat tagttacttt
       61 ctgatgatag atatggtaca ataacgttag aggtgagaat tatgactgat gcacatacag
      121 tatgtccgaa gtttgaatcg gcgttccaat tactaggtaa acgctggact ggacttatca
      181 tcaatgtctt actgactggt ccaaaaaggt ttaaacaagt cgccgctgag atcccgcaaa
      241 tgagtgatcg ggtgcttgca gaacgtttga aggaacttga ggaaatggat atttgcttaa
      301 gacaagttta tccagaaact cctgtacgca ttgaatatga attaaccgaa aaagggaaag
      361 cactccaaga agtaatgctt gaagtccagt gctgggcgga taaatgggtg gaagtaccta
      421 attaaaaaag aaataatctc tccaaccaat atggagagat tattttttag cttgaatctt
      481 tcctagaacc atactataat agaaactatc taaataacta aagacaatga aagagccaag
      541 tagcatagtg agtctgtata gggagaagtg gtcatagact gaaagccact ttacaaacga
      601 atttgtgaac atttcacctc tggagtcgcc ccccgagaag cactttatgt gtgaaggtgg
      661 tccggttact aagccgttat cgaattttga gtgggaacaa ttttttgttc ttattagggt
      721 ggtaccgcga gaagtctcgt ccctttgtgg atagagcttt tttattttgt ctaaaaagaa
      781 ggagtgaacg gtatgttaga acagttacag acgctgaaaa atgaagcaga aacgcaaatt
      841 aacgaagcat cagacttaaa aacattaaac gacttacggg taaaatacct tggtaaaaaa
      901 ggcccgatga ccgaaatcat gaaacaaatg gggaaacttt ccgcagaaga acgaccaaaa
      961 atgggttcac ttgcgaatga agtaagaacc gcattaacag aagcaatttc aagcaaacaa
     1021 caaattttag aaacagaagc aatcaatgaa aaactaaaat cagaaaccat tgacgttaca
     1081 ttaccaggta ctgctccgag tattggaaca aaacacttgc taacacaagt aattgaagaa
     1141 atggaagata tgttcattgg gatgggttac gaaattgcag aagggccaga agtagaacta
     1201 gattactaca acttcgaagc gttaaattta ccaaaagatc acccagctcg tgatatgcaa
     1261 gatagcttct atattacaga aaatacttta ctacgtaccc aaacttcacc tgtacaagca
     1321 agaacaatgg aaaaacatga cttctctaaa ggaccaatca aagttatctg tccagggaaa
     1381 gtgtaccgcc gcgacaatga tgatgcaact cactcccacc aatttacgca aattgaaggg
     1441 ctggttgttg gcgaaaacat cacgtttgct gacttaaaag gaacattaac tgttctcgca
     1501 aaaacaatgt tcggtgaaga acgtgaaatt cgtcttcgtc catccttctt cccattcaca
     1561 gaaccatccg ttgaaatgga tatctcttgt ttcaaatgtg gcggtaaagg gtgccgcgtt
     1621 tgtaaaggaa caggttggat tgaaatttta ggaagcggaa tggtacatcc aaacgtgctt
     1681 gaaatgtcgg gaattgattc cacgcgttac agcggttttg ctttcggctt aggacctgaa
     1741 cgggttgcga tgttgaaata tgcggtggat gatattcgcc acctttatac aaatgattta
     1801 cgctttacga agcaattcca aagtacagaa acgggggaaa tctaatgtta gtttcatata
     1861 attgggtcaa agaatttttc caagacttcc cgttaacggc ggaagagcta ggagaagcaa
     1921 ttacaagaac aggtattgaa atcgaaggcg tagaagaatt aagcgctagt ttgaaaaatg
     1981 tcgtagtcgg cgaagtttta tcatgcgaac gccaccccga tgcagagaaa ttgaataaat
     2041 gtctcgttca aacagacgaa acagaacctg ttcaaatcat ttgcggagct ccaaacgttg
     2101 ccgctggtca aaaagtaatc gtagccaaag ttggcgcaag acttccaggt ggacttaaaa
     2161 tcaaacgcgc aaaactacgc ggcgaagtgt cagagggaat gatttgctcc ctggctgaac
     2221 ttggctttga aagcaaagtt gtaccaaaag catacgcaga aggaatttat gtattacctg
     2281 cgcacgtgga aacgggtgta agtgcaatca ctttacttgg actagatgat gcgattttgg
     2341 atatggcaat cacaccaaac cgcgcagatg cattgagcat gaatggtgta gctcacgagg
     2401 ttggtgcgat tattcatcaa aaaccagcac aaccaaccga gcctgacgta tctgaaaaag
     2461 gaaaagcaga cgatttcatt tctgtagaag ttgaaaatcc agccgaaaca ccttactatg
     2521 ctattaaaat ggtagaaaac attgaaatca aagaatcgcc actatggctg caaacaaaac
     2581 taatgaaagc tggcattcgt ccacataata acgtggtcga tgttaccaac tacatcaatt
     2641 tattatacgg acaacctttg cattcctttg actatgataa aattggtagc aagaaaatcg
     2701 ttgtacgttc tgcaaaagaa caagaagaga ttaccacgct tgatggcgag aaaagaactt
     2761 tacaggctgg acatacagtt attacaaatg gcgtagaacc aattgctatc gctggcgtta
     2821 tgggtggaga attttccgaa gtaacagaga acacaacgac agtagcgcta gaaggtgcta
     2881 ttttcagcag ctcttccatc ggtaaagcat ctcgcgaatt atacctacgt acagaagcaa
     2941 gcatccgtta cgacaaaggt tctgacgctt ggaaagtaga aaaagcactt gcacatggcg
     3001 gagcgttaat cgctgaacta agtggcggaa cactagtagg cggtgtcgta gaagtagata
     3061 accgtgaaaa agctgtaaat aaaatcgaaa caagcctaac acgcattaac cgcattttag
     3121 gaacagcaat tacgcttgcg gaaatcgaaa caatttttga tcgtttaggt tttgtattag
     3181 aagtgaaaaa tgatacttta atcattgaag tgccgacaag acgttgggac atcactattg
     3241 aagcagatat tttagaagaa gtagctcgta tttacggtta cgatgaaatt ccggtaacac
     3301 ttcctgcgac aagcacaaca ggcggcttat cagacagcca aaaagctcgt cgtgtcatgc
     3361 gcgcttattt agaaggagca ggacttaacc aagcattaac ttactcttta acatctaaaa
     3421 aagatgcaac tcgtctagcg ctttctgatg aaaaaacagt tgcattatcg atgccaatga
     3481 gtgaagaaca tagccattta agaacaagta tcgttccaca attaattcgt agcgcaagtt
     3541 ataacatcgc tcgtaaaaat atggacgtgg cactttacga aatgggtacc gtgttctacg
     3601 caacagaagg ggacaattta ccaattgaac aagagcattt ggcaggtcta attactggga
     3661 actggcatac ggttgattgg caaaaaacac caaaaccagt agacttcttc gttttaaaag
     3721 gaattgtcga aggtttagtg aacaaattag gtatcaaatc cgaacttcac tggaaacaaa
     3781 cagaaaaaga agaactgcat ccgggaagaa ccgccagcct tattttagaa ggacaagaaa
     3841 ttggttatct tggagcactt cacccagcgg tagaagctaa ctatgattta aaagaaacat
     3901 atgtctttga aatcaatgta gctgctttac tagatgcaac caaagaaaaa gttgtgtacc
     3961 atccaatccc acgttaccca gaaatgactc gcgacttagc attgcttgtg gataaaaata
     4021 ccgaccatgc aacaatttct caagtaatcc aagagcacgg cggaaagtta cttgtcgata
     4081 tcgagctatt tgatattttc gaaggggaga gtcttggcga aaataaaaaa tcgctcgcat
     4141 acacattgac tttcctagat agcgaaagaa cactagtcga agaagatgta caaaaagcaa
     4201 ccaataaagt aatagaagca ttacaagaaa aactacatgc gattattcgc taaatgaaga
     4261 agaactaggc tagctggaaa acattttcaa ctagtttggt tctttttttg ttttttataa
     4321 aatagtggaa gtctttcctt ttttagtact tcacttactt aaataacaca tgttataatg
     4381 atggcacatg ccagagaaaa aaggacgaga aaaatgacct atgtagaaat gaaagatgta
     4441 tctaaatact atcaaatggg cgagaacgtt gtcacggcaa atgataaaat cactttcggg
     4501 ataaaaaagg gtgaatttgt tgtaatagtc ggaccttctg gagccggaaa atccactgta
     4561 cttaatatac ttggtggaat ggatagtgca agtgaaggca aaattatggt agatgggcag
     4621 gatattgctc aatataatgc aaaacaatta accaaatatc ggcgaacaga tgtcggcttt
     4681 gtatttcaat tttacaattt ggtacccaat ttgactgcta aagagaacgt agaattagct
     4741 gcccaaattg cgccaaatgc attagacgca gaaactgttt taactcaagt tggattaagt
     4801 cacagattag acaattttcc agcacaacta tctggcgggg aacaacagcg tgtcgccata
     4861 gcacgtgcgc ttgctaaagc accgaaactg cttttatgcg atgagccaac cggggcactt
     4921 gattacgata ctggaaaatc agtcttaaaa ttattacaag aaacttgccg taacacggga
     4981 acaaccgtta ttgttattac ccataacaca gcgattacgc caattgcaga tcgaattatt
     5041 gaaattaata atgcaaaagt tcgcagcatc aaagaaaatc cagaaccaat gtcgattgat
     5101 gatttagaat ggtaggaagg agcaaccagt gaaacgttca gctttatgga aagatattta
     5161 ccgcgaaata tggcgttcta agagccgctt tatttccatt tttatgctga ttatgttggg
     5221 tgttgctttt ttctccggac ttaaagcaac tggacccgat atgcttctaa cagccgacaa
     5281 ttattttaat aagtatgaat tagctaattt taacgtgcaa tctacttatg gactagatga
     5341 gacggacaag gaagcacttg aagatatatc tggtgtcgca caagtggaac tcggatatac
     5401 agcagatact ttaatgaaag ataaaaatat cgtaacgaaa ctattttcca attctgaaag
     5461 cgataattta aatcaataca agatagctag tggccgttta ccagaaaaat caggggaaat
     5521 tgcactggat gacaatgacc ttgttcataa aaatgtcaaa atcggcgacg aagtaacttt
     5581 tgttaaaagt gatggaaata agttaactaa cacgctaaaa aaatcaactt ataaagtagt
     5641 tggcttcgtt agctcaccag cttacatcca gaaatctgaa cgtggctcga gcacggttgg
     5701 aaaaggaaaa acagatgcct ttggtgtgat tccagaacag gattttgatt taccagaata
     5761 cactattgct aatcttactt ttaacaattt agcagcaaaa caagctttta gtgacgaata
     5821 tgtatccacc gaagaaaaag ataagaaaag cgtcgaaaaa gctttagcag accaaccaga
     5881 aaaaagatta aataaaatca agacgaagga acaaaagaaa ttagacgatg caacagcaga
     5941 aattaacaaa cgaaaagcag aactacagga aaatgaagct aaacttgcaa atgccaaagc
     6001 acaattagaa gaaggatttt ctgaatataa tgctgccaaa gcaagctatg acgccaaaat
     6061 caagcatggc gaagcagaga ttgcaaacgg tgaagcagaa cgaagaagcg caaaaaaaca
     6121 acttgatacc gcaaaaacac agattgacca aggcgaaaca gctctttcac aagctgagat
     6181 ggaattagaa gaaggtagag cggcttggga agatgccaat aatcttctta atacagcaaa
     6241 tggttatttg cgaagtgcta agtcgacatt agaaaatgct ttaaaacaac cagatttaac
     6301 tgattttgag ctagaccgga acagcttaac aaattcattt caaatgcttg catcagaact
     6361 tgatttatca agtgcagagc gcgctgaata tgaaaatgcg atgaatcagt tactagatga
     6421 ttatgaaaat ggcaatatta gtgatgcgga aattagggaa gccttaaacg cggcacttgc
     6481 gcaagttggt aacgctgaaa atgaatacca atccgccaga gccactttag acgctgaaaa
     6541 acaaaaaata gaacaaggcg aacaaacttt agctgcaaaa aaacaagaac ttcaacaagc
     6601 aaaaactgcc taccaagaag gtcttgctaa atatcaagca ggtttagaaa aaatttcgca
     6661 agcaaaacaa caactcgctg atggaaaaga aacaggttcc acagaactac aaagcgcact
     6721 tgctaaatta aacgtaggtc aagcggaata cgaaaaaaat ctcgctttgt ttgaaaaaga
     6781 gaaagcaaaa gcagaaggca agctagctag cgccgaaaaa gaggttaaaa tcggtcaaga
     6841 aaaactagat gcgctcaaac ttccaaaata ttatgtcctt gatcgaaacg acaatccagg
     6901 ctacagcgaa tataaagaaa atgcagatcg tttaacctcg ttatcaaccg cattcccaat
     6961 tttcttcttc ctaatcgctg cgctcgtttg tttgacgacg atgacgcgga tggtagagga
     7021 acaaagaaca caaattggaa cgttgaaagc atttggttat tctaatggta gcattatttt
     7081 gaaatacctc gtatatggtt ctaccgcgag tataatcggg agcgttcttg gaatattaat
     7141 tggattccag tttttcccga atatcatttt taacgcctat aaatcgatgt atgaaatgcc
     7201 accagtggat attggctttt actggagcta cagtttgcta tccttatttg ttgcgttatt
     7261 ctgtacaaca tttactgctt atgtagcttg tcgtgccgaa cttcgcgcca atgcagcaac
     7321 attaatgcgt cccaaagcac caaaaattgg caaacggatt ttcttagaac gaattagttt
     7381 tatttggaaa cgaatgaact tcacaagcaa agtgactgcg agaaatttat tccgctacaa
     7441 acaaagaatg ctcatgacgg ttctaggagt tgctggatgt accgcattaa ttcttactgg
     7501 ttttggatta cggaattcaa ttagtgacat cgccaaaatg caatatggcc aaattatgaa
     7561 atatgatgca gctatttatc aagacatgag cgcaccacca gctgccaaag aaacctttga
     7621 tgaaataatg aatgactcca atatcaaaag caagttagct atgtctcaaa caaatattga
     7681 gaccgtaaaa tcaggacaat cagctcaaac tacatccatt attgtcccta aaaatttgaa
     7741 tgaattacca gattacattg tgcttcgcga ccgtgccagt catacaaccg aaaaactcac
     7801 cgatgatggt gcgattatta cggaaaaact agctaaatta tttgacgtaa aaccaggcga
     7861 tacaattacc gtcaaaaacg ctgagaatga caaattccaa ataaaagtca gtgccattac
     7921 tgaaaactat gcaatgcact acatttatat gacaaaatca tattatcaac aagtatttaa
     7981 agaaaaacct acctacaatt tagacttatt aatgttaaaa gatacctctg aaaaagtaga
     8041 gagcaatttt gcggaaaaat taacagatag taaagccatt ttaaacgtta c
//
LOCUS       DASEAA010000121         8068 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.121, whole genome shotgun sequence.
ACCESSION   DASEAA010000121 DASEAA010000000
VERSION     DASEAA010000121.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8068)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8068)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8068
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.121"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..790)
                     /locus_tag="U0342_002119"
     CDS             complement(<1..790)
                     /locus_tag="U0342_002119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464562.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF817 domain-containing protein"
                     /protein_id="HEM2423462.1"
                     /translation="MQFFRLLWVFTWKQALCCIFPGIIFISLALTKLIDIPFIARYDL
                     LLIICLGTQVLLIKFGLETWDELKVIMVFHLIGLGLEIYKVHMGSWSYPEPGLMKLFG
                     VPLYSGFMYSSVASYICQAWKRFDLKMTNWPNIWLVSSLCITIYANFFTHHFIMDFRW
                     ILIVLVLVLFRKTYVYFKVSSTQLKMPLSFSFLCIAFFIYLAENIASFYGAWSYPDQL
                     IAWRPVHVSKITSWYLLVIISIIIVAQLKFVKQKLEQTSVKAKSE"
     gene            complement(858..1439)
                     /locus_tag="U0342_002120"
     CDS             complement(858..1439)
                     /locus_tag="U0342_002120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464563.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor guanylyltransferase"
                     /protein_id="HEM2423463.1"
                     /translation="MKNEKVNVGIVLAGGRSSRFGEPKAFFQDEATGKTWVELTVSKL
                     LPLCDMVFVSANHENHSKLVALFDAEPSIEIIPDQTAFSEFGPLGGIYAVMVEANAYQ
                     KANFLVLPVDMPFLTPKEIGRLADYPNHFAKTAQANHYLVANIPYSREVLHHLLQDEQ
                     HRVRALLEKLHTKPLAFEEDAPFRNINHQNELF"
     gene            complement(1420..2082)
                     /locus_tag="U0342_002121"
     CDS             complement(1420..2082)
                     /locus_tag="U0342_002121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464564.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2423464.1"
                     /translation="MLRLQFHKKLPFHDLNIDYTFEKPVTAMMGASGSGKSTLFQCVS
                     GLKSIDGGIIEFDGTPWDDSNISLHLPVTERKVGYLFQNLALFPNMNVYENIAFGLKV
                     KKKKKKEQAEIQQQVRKMSDYLQISHLLYSSVQKLSGGEKQRVAMTRAMITEPKLLLL
                     DEPFNGLDEETRLICMKLVGQMAKDFHIPVIFVTHYASEAEMMTEEILVMREGRLEKR
                     KS"
     gene            complement(2085..2756)
                     /locus_tag="U0342_002122"
     CDS             complement(2085..2756)
                     /locus_tag="U0342_002122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464565.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum ABC transporter permease"
                     /protein_id="HEM2423465.1"
                     /translation="MFTSVWHTLLVATISTFLAFMTMLPLSYYFAGRKSRFQLPVEIL
                     ILLPLVLPPTVVGLVLLNVLGRNDFIGGVLWDTFDFSFIFSLSGAIVATTIIILPIMY
                     QGLKSAFLSIDHELVWAAETLSANKKQIFTKIILPNCWQPILAGVLLSFCRAMGEFGA
                     SLMVAGYIEGKTDTIASSIYFMVQQGDMRTAIYLGLINVIIGVFALLVIHVLTIRQSN
                     LTRGM"
     gene            2861..3631
                     /gene="modA"
                     /locus_tag="U0342_002123"
     CDS             2861..3631
                     /gene="modA"
                     /locus_tag="U0342_002123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2423466.1"
                     /translation="MKKIALIICCGLLLLLGACEDTPEKAKTTTIHISAAASLKDTID
                     DVKPLFEKANPTIKLSFDFGGSGQIRERVESGAPIDGVLLASKKDADTLIKQNLAEKT
                     KEFAGNELVLIEPKNVDQKAGMNLEQLLNDASKIAIGDPESVPAGAYAKQTLENLNLY
                     NAEKAKLVLATDVRQVLSYVEAGNADAGFVYQTDALLSKKVQVKAKIDEKLHDPIAYY
                     SAQVSDSDKKEETATFLDFMNTSEAQKILEKYGFKAAN"
     gene            3726..4949
                     /locus_tag="U0342_002124"
     CDS             3726..4949
                     /locus_tag="U0342_002124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464567.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin molybdotransferase MoeA"
                     /protein_id="HEM2423467.1"
                     /translation="MIEKRNTIRMEQAREILCNQITHLPVEKKCVTEALNQVLQEPIF
                     APFPAPYFRRSGYDGFAITEEDDENYPITLHVVAEVPCGETYDKPLKPGETVRIMTGA
                     KVPDNASKIIMLEQSREADNENEIVLINTQKSTNITEIGTEFAKGDLLLDRGHILNAG
                     SISLLSSFGIQEVQVIRKPKVAILSTGSELVSAGNPLPDGKIFNSNQPLLENLLKVHH
                     AEICAAEQLPDNYEDTKKRLLELTQIADLIITTGGVSVGDFDYMADIAKKEAELLFNK
                     IQMRPGSPTTGMWLDNTLIIALSGNPGACFTGFYLFVEPVLATLMGKDTTETTKVRAK
                     MASDYTKNNGYDRFLRGTYRLSDEGEYLVELVGSDMSSALGNLHLTTCLFKIPRGKVG
                     KLKGEEVEAWLLSSK"
     gene            4928..5413
                     /gene="mobB"
                     /locus_tag="U0342_002125"
     CDS             4928..5413
                     /gene="mobB"
                     /locus_tag="U0342_002125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464568.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin-guanine dinucleotide biosynthesis
                     protein B"
                     /protein_id="HEM2423468.1"
                     /translation="MATILQIIGFKNSGKTTLLNALIRASRKENYTVSAIKHDAHDFS
                     VDHAGTDSYSFQESGAEAVVIANSRQYAVMEQTGIDLKTAIQKLPESDIVLIEGYKEG
                     PFPKIILIREQAEIELLNNSKAVHKIATHNPALKNEAIFIGEEKALTLFAETLIKEFL
                     K"
     gene            5410..5832
                     /locus_tag="U0342_002126"
     CDS             5410..5832
                     /locus_tag="U0342_002126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaE"
                     /protein_id="HEM2423469.1"
                     /translation="MKYVALQHEKIEIGPLSEKLINKNHGGTNLFVGTIREWTGDIQT
                     EEIRYTSYEEMALKELNKLAAEVETKWGADVVIVHRLGLLQITDVAVVIGVSTPHRAA
                     CYEGSRYIIERLKERVPIWKEEKDVDKTRWGGIDANNS"
     gene            5816..6064
                     /gene="moaD"
                     /locus_tag="U0342_002127"
     CDS             5816..6064
                     /gene="moaD"
                     /locus_tag="U0342_002127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464570.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdopterin converting factor subunit 1"
                     /protein_id="HEM2423470.1"
                     /translation="MLTTVKFFAFLADKTHKTEVKLNLQQCQTVGEVREVISSEFPEI
                     AVDLATCMLAVNMEFQQDQDLLPEEITEIAVIPPVSGG"
     gene            6077..6559
                     /gene="moaC"
                     /locus_tag="U0342_002128"
     CDS             6077..6559
                     /gene="moaC"
                     /locus_tag="U0342_002128"
                     /EC_number="4.6.1.17"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464571.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic pyranopterin monophosphate synthase MoaC"
                     /protein_id="HEM2423471.1"
                     /translation="MEKDDLTHFNDEKRAKMVDVTSKSETKRRAIARATIHMNEETLA
                     RIHAGKIAKGDVLAVAQVAGIMAAKKTSELIPMCHPIMTTKADISFEDDGKTALTITS
                     EVVTVGKTGVEMEALTAVTIAALTIYDMCKAMDKGMRIEKTYLVEKTGGKSGTFKAEA
                     "
     gene            6588..7589
                     /gene="moaA"
                     /locus_tag="U0342_002129"
     CDS             6588..7589
                     /gene="moaA"
                     /locus_tag="U0342_002129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GTP 3',8-cyclase MoaA"
                     /protein_id="HEM2423472.1"
                     /translation="MQLLKDKFGRVHDYIRISVTDRCNLRCVYCMPEEGLTFLPHEKV
                     LSKDEIVSFMELMVKFGIKKVRITGGEPLLRTDIVEIVRGLGAIPEIEDISITTNAMY
                     LAKKAEALKDAGLTRVNISLDSLHEDRFKAITRGGRLQKVLDGIQKAEEVGLFPIKLN
                     VVLIKGQNDDEITDFLRFTKDKDINIRFIEYMPIGHAGTSWKEKYLPLDTIFEACNEA
                     GYEYEPVDSIRGNGPSENFRIKGAKGTFGVIHPVSAHFCDSCNRLRLTADGYIKACLY
                     WDEEMNIRPFIQDPVKLMQLVQKAIDNKPENHEMALKLQDEVQSNKPTWRRMSQIGG"
     gene            complement(7624..>8068)
                     /locus_tag="U0342_002130"
     CDS             complement(7624..>8068)
                     /locus_tag="U0342_002130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464573.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="molybdenum cofactor biosynthesis protein MoaB"
                     /protein_id="HEM2423473.1"
                     /translation="ISDTRNLDTDTSGQLIQSALETAGHEVISRIVVPDDVTLIKQKI
                     NELAANGSFCLITNGGTGIARRDVTYEALFATIQQEIPGFGEIFRMLSYEEVGSRAMV
                     SRAFAGFSESGLLLFALPGSSNACQLAVQKLIIPELPHLIAERQK"
BASE COUNT         2783 a         1501 c         1617 g         2167 t
ORIGIN      
        1 cctcgctttt ggcttttaca gaagtttgtt ctaatttttg cttaacaaat ttaagttgtg
       61 cgacgattat aatactaata ataacaagta aataccaact cgtaattttt gaaacgtgca
      121 ccggacgcca tgcaatcagc tggtctggat aagaccaagc tccgtaaaaa ctagcaatgt
      181 tctccgcaag ataaatgaaa aaggcgatgc ataaaaagga aaaagataaa ggcattttga
      241 gttgagtcga actaactttg aaataaacat atgtttttcg gaataaaacg agaactaaaa
      301 caatcaaaat ccaccgaaaa tccattataa aatgatgcgt gaaaaaatta gcgtaaattg
      361 ttatgcaaag gctacttact aaccagatat ttggccaatt tgtcatttta agatcaaatc
      421 ttttccaagc ctgacaaata taactcgcca cacttgaata cataaaaccg ctataaagcg
      481 gcacaccgaa aagtttcatt aaaccaggct ctggataact ccatgacccc atatgtactt
      541 tatagatttc aagtccaagt ccaataagat gaaaaaccat aattacctta agttcatccc
      601 atgtttctaa accgaatttt ataagtagca cttgcgttcc aagacaaata atcaaaagta
      661 agtcgtagcg cgcaataaaa ggaatatcaa tcaattttgt aagtgcaagc gaaataaaga
      721 taatgcctgg aaaaatacaa caaagtgctt gcttccaagt aaacacccaa agtaagcgga
      781 aaaattgcat aaaaaaacct cttctcatga ttttctctag tttaccaaaa aaaactaaag
      841 aaaaggacaa gaaaaggtta aaaaagttca ttttgatgat tgatatttct aaatggggca
      901 tcttcttcaa atgctaaagg tttggtatgg agtttttcga gtaaagctct gacacgatgt
      961 tgctcgtctt gtagtaagtg atgtagcact tctcgtgagt agggaatatt ggcaaccaaa
     1021 tagtgatttg cttgcgctgt tttagcaaaa tgattaggat aatcagccag tcgtccaatt
     1081 tcttttggag tcaaaaaagg catatcgaca ggaagtacta ggaaattagc tttctgataa
     1141 gcatttgctt ctaccatcac cgcataaatt cctccaagcg gtccaaattc actgaatgcg
     1201 gtttgatctg gaatgatttc aatgcttggt tctgcatcaa aaagagccac gagttttgaa
     1261 tgattttcat gatttgccga tacaaatacc atatcgcaaa gcggcagcaa cttactaacc
     1321 gttagctcga cccacgtttt tccagttgcc tcatcctgaa aaaacgcttt tggttcccca
     1381 aaacggcttg agcgaccacc ggctaataca atgccgacat taactttttc gtttttcaag
     1441 gcgtccctct cgcataacta aaatttcttc ggtcatcatt tctgcttccg aggcataatg
     1501 cgtgacaaaa ataacgggga tatggaagtc tttggccatt tgaccaacta atttcataca
     1561 aatcaaacgc gtttcttcat ctaaaccatt gaaaggttca tccagtaaaa gtaattttgg
     1621 ctccgtaatc attgctcgag tcatcgcaac acgttgtttc tcgccaccag ataatttctg
     1681 aacggaagaa taaagcaggt gagaaatttg tagataatca ctcatttttc gtacttgttg
     1741 ctgaatttct gcttgttctt ttttcttctt tttcttcact ttcaagccaa aagcgatatt
     1801 ttcatacaca ttcatatttg ggaatagagc taaattctga aataaataac ctactttgcg
     1861 ctctgttaca ggaagatgta acgaaatatt ggaatcatcc cacggagtcc cgtcaaattc
     1921 aataatgccg ccgtcaatac ttttcaagcc actaacgcac tgaaatagag ttgacttgcc
     1981 tgaaccactt gcgcccatca tcgcggttac tggcttttca aacgtataat caatatttaa
     2041 atcatgaaaa ggaagttttt tgtgaaattg taatcgtagc ataattacat ccccctcgtt
     2101 aaattactct ggcgtatagt taatacatga atgacaagta aagcaaacac gccgataatg
     2161 acgttaatta atccaagata aatcgcagta cgcatgtctc cttgttgcac cataaaatag
     2221 atgcttgaag caatggtatc cgtcttgcct tcaatataac cagccaccat caaacttgcg
     2281 ccaaattcac ccatcgcccg acaaaaacta agcaaaaccc ctgctaaaat tggttgccag
     2341 caattcggta aaataatttt tgtgaaaatt tgttttttat tcgctgaaag agtctctgct
     2401 gcccatacaa gttcgtgatc aattgataaa aatgctgatt tcaaaccttg atacataatc
     2461 ggtaaaataa taattgtcgt tgcaacaatt gcgccgctaa gggaaaaaat aaagctgaaa
     2521 tcaaaagtat cccaaagcac accaccaata aaatcattgc ggccgaggac gttcagtaaa
     2581 actaaaccaa ccacagttgg cggtaaaaca agcggaagta aaattaaaat ctccactggt
     2641 aactggaaac gtgattttcg accggcaaaa taataactca gtggtaacat cgtcataaac
     2701 gcgagaaacg tagaaattgt agctacaagt aatgtatgcc aaacagatgt aaacataaat
     2761 ctcctcctga accctctagt acttctatta ttatcgttct ctctggtata aaatgtcaaa
     2821 cttaagtaca atgtaactaa ataaaaaagg gggatgaaga atgaaaaaaa tagcacttat
     2881 tatatgttgt ggattattac tacttctcgg agcttgcgag gatacacctg agaaagccaa
     2941 aacaacgact atacatattt cagctgcagc aagtttaaaa gatacgatag atgacgtaaa
     3001 gccacttttt gaaaaagcta atccaacgat taaattatcc tttgattttg gtggttctgg
     3061 gcaaattcgc gaacgtgtcg aaagcggtgc accaattgac ggcgtccttt tagcgagtaa
     3121 aaaagatgcg gatacactga ttaagcaaaa tttagcagaa aaaacgaaag aatttgcggg
     3181 aaatgaactc gttctaattg aacctaaaaa cgtggatcag aaggcaggga tgaacttaga
     3241 acaattactt aatgatgcat ccaaaatcgc catcggggat ccagaatcag taccagcagg
     3301 cgcctatgcc aaacaaacgc tcgaaaactt aaatctatat aatgcagaaa aagcaaaact
     3361 cgttcttgcc accgatgttc gtcaagtctt atcctatgtg gaagctggaa atgcagatgc
     3421 aggcttcgtt taccagacag atgctctatt aagcaaaaaa gtacaagtga aggcaaaaat
     3481 cgatgagaaa ctccatgatc caattgctta ctatagcgca caagtcagtg actcggataa
     3541 aaaagaagaa accgcaacat tccttgattt tatgaataca tcagaagcgc aaaaaatact
     3601 ggaaaaatac ggattcaaag cagcaaacta aggagaagtc gctttacttt ttaaaacaag
     3661 caaactcctg tatattggta ctaaagaaaa cgcatacatt atttaggaaa gggaagtgcg
     3721 cccagatgat tgaaaaaaga aataccatta gaatggaaca agcgagagag atattatgta
     3781 atcaaataac gcatcttcca gtagaaaaga aatgtgtgac agaggcgtta aaccaagtac
     3841 tacaagaacc tattttcgcg ccgtttcctg ctccctattt taggcgctct ggttatgatg
     3901 gctttgcgat tactgaggag gatgacgaga attatcctat cactttgcac gttgtagcag
     3961 aagttccgtg tggggaaaca tacgataaac cgctaaaacc tggtgaaacc gtccgaataa
     4021 tgactggagc aaaagtgcca gataatgcct cgaaaattat tatgctcgaa caatcaagag
     4081 aagcggataa cgagaatgaa atcgtactta taaatacaca aaaatctact aacattacag
     4141 aaatcggtac ggagttcgcc aaaggagatt tgctgttaga tcgtggacac attttaaatg
     4201 ccggttcgat aagtttactg tcatcctttg gaattcaaga agtacaagtc atcagaaaac
     4261 caaaagtagc tattttatcc acaggtagtg aacttgtttc tgctggaaat ccacttccag
     4321 atggcaaaat ttttaatagt aatcaaccat tactggagaa tttactaaaa gtacatcatg
     4381 ccgagatttg cgcggccgaa caattacctg ataattatga ggatacgaaa aagcgattac
     4441 tagaattgac tcaaatagca gacttgataa tcactacagg tggtgtttct gtaggggact
     4501 ttgactatat ggctgatatt gcaaaaaaag aggcagaatt actttttaat aaaattcaaa
     4561 tgcgaccggg cagtccgaca acagggatgt ggttggacaa cacgcttatc atcgcacttt
     4621 ctggtaatcc aggggcatgc tttacaggtt tttacttatt cgtagaaccg gtattagcta
     4681 ccttaatggg gaaagataca actgagacga ccaaagtccg tgcaaaaatg gcgagcgatt
     4741 acactaaaaa taatggctat gatcgttttt tacgaggaac ctatcgtttg tctgacgaag
     4801 gggaatattt ggttgagttg gtaggaagcg atatgtcgag tgcgctagga aacctccatt
     4861 taaccacctg tttattcaaa atccctcgcg gtaaagttgg aaaattaaaa ggagaagagg
     4921 tcgaagcatg gctactatcc tccaaataat cggctttaaa aatagcggga agacaacttt
     4981 actaaatgca ctaattcgag ctagtcggaa ggaaaactac acagtatctg ccatcaaaca
     5041 tgatgcacat gatttttctg tagatcacgc gggaacggat tcctactcgt ttcaagaaag
     5101 tggtgcagag gctgttgtta ttgcgaattc gagacaatat gctgtgatgg aacaaaccgg
     5161 catcgattta aaaacagcca ttcaaaagtt accagaatca gatatcgttc ttatagaagg
     5221 ctacaaagaa ggtccttttc ctaaaattat tttaattcgc gaacaggcgg aaatcgaact
     5281 tttaaacaat agtaaagctg tccataaaat tgcgacgcat aatccagcgt taaaaaatga
     5341 agctattttc atcggcgaag aaaaagcttt aacccttttt gcagaaacgt taatcaagga
     5401 gtttttaaaa tgaaatatgt agctttgcaa catgaaaaaa tcgaaatagg accactttct
     5461 gaaaaactaa tcaataaaaa tcacggtggg actaatcttt ttgttggtac aattcgagaa
     5521 tggacgggtg atattcaaac agaagaaatt cgttacacat cgtacgagga aatggcgctc
     5581 aaagaactaa ataaattagc agcagaagta gaaacaaagt ggggggcgga tgttgtcatc
     5641 gtccaccgac taggactttt acaaataaca gatgtcgctg tggtcatcgg tgtatcaaca
     5701 ccacacagag ccgcttgcta cgagggatcc agatatatta ttgaacgttt aaaagaacgg
     5761 gtacctatat ggaaagaaga aaaagatgtc gataaaacaa ggtggggtgg catagatgct
     5821 aacaacagtt aaatttttcg cttttttagc tgataagaca cataaaacgg aagtgaaatt
     5881 gaatttgcag caatgccaga cagttggcga ggttcgagaa gttattagta gtgaatttcc
     5941 tgaaatagcc gttgatttgg caacatgtat gctagctgtg aatatggaat ttcaacaaga
     6001 tcaagacctt ttaccagaag aaataaccga aatcgcagtc attccgccag taagcggtgg
     6061 ataaggaggg taatagatgg aaaaagatga tttaacgcat tttaacgatg aaaaacgcgc
     6121 aaaaatggta gatgttacga gcaaatctga aacaaaacgc cgtgcaatcg ctagagctac
     6181 gatacatatg aatgaagaaa ccttagcgcg tattcatgct ggtaaaattg ctaaaggaga
     6241 tgttttggcc gttgcgcaag ttgctggaat catggcggct aaaaaaacaa gcgaactaat
     6301 tccaatgtgc catccgatta tgacgacaaa agctgatatt tcttttgaag atgacggtaa
     6361 gaccgcgcta actatcacgt ccgaagtcgt aaccgttgga aagacgggcg tcgaaatgga
     6421 ggcgctcacg gcagtaacca ttgcagcatt aaccatttat gacatgtgca aagcaatgga
     6481 taaaggcatg cggattgaaa aaacgtattt agtggaaaaa acaggtggaa aaagcgggac
     6541 atttaaagca gaagcgtaac tattttgtag gataggagtt ttgttttatg caattattaa
     6601 aggataaatt tgggcgggta cacgattata ttcgtatttc agtaacagat cggtgtaatt
     6661 taaggtgtgt gtattgtatg cccgaagaag gcctgacatt tttgcctcat gaaaaagtac
     6721 tatccaaaga tgaaattgtc agctttatgg aattaatggt gaaattcggc atcaaaaaag
     6781 tccgcatcac tggcggagag ccgttactaa gaactgatat agtggaaatt gttcgcgggc
     6841 tgggagcaat tcctgaaata gaggatattt cgattacaac gaatgctatg tatttggcaa
     6901 aaaaagcaga agcactgaag gatgcggggc tcacacgtgt gaatatcagc ttagattctc
     6961 ttcatgaaga tcgttttaaa gcaattacac gaggtggccg tttgcaaaaa gtacttgatg
     7021 gtattcaaaa agcagaagaa gttggactgt tcccaattaa gcttaatgtc gtactaatta
     7081 aaggacaaaa cgatgacgaa ataactgatt tccttcgatt tacaaaagat aaagatatta
     7141 atattcgttt cattgaatac atgccaattg gtcatgctgg tacgagttgg aaagaaaaat
     7201 atttgccgct tgatacaatt tttgaagctt gtaatgaagc tggttatgag tatgaaccag
     7261 tggactcgat tcgtggaaat ggcccctccg aaaatttccg tataaaagga gcgaaaggga
     7321 cgtttggtgt gattcacccg gttagcgctc atttttgtga tagttgcaac cgactcagac
     7381 ttactgcaga tggctatatt aaagcatgtt tatactggga tgaagaaatg aatatccgcc
     7441 catttatcca agatccagtg aaattaatgc aattggtgca aaaagcaatt gataataagc
     7501 ctgaaaatca tgaaatggca ttaaaattac aagatgaagt acaatctaat aaaccaactt
     7561 ggcggcgtat gagtcaaatt ggaggataaa taaaacatcc ggtcacatgt gtggtcggat
     7621 gttttatttt tgtcgttctg ctattaaatg aggtaattct gggataatca atttttgaac
     7681 agcgagctgg caagcgttac ttgatccagg caacgcaaaa agcagtaagc cgctttctga
     7741 aaagccagcg aatgcacgag acaccatggc gcgactacca acttcttcgt aactgagcat
     7801 cctgaaaatt tcaccaaacc cagggatttc ttgctgaatc gttgcgaata atgcttcata
     7861 cgtaacatca cgcctagcaa taccggtacc accatttgtg ataaggcaaa aggacccatt
     7921 agctgctaac tcgtttattt tttgcttaat gagcgtaaca tcatcaggca cgacaatccg
     7981 cgaaataacc tcatgcccag cagtttctaa ggcagattga atcagttgac cactagtatc
     8041 cgtatccaaa ttccttgtat cactaatc
//
LOCUS       DASEAA010000122         8023 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.122, whole genome shotgun sequence.
ACCESSION   DASEAA010000122 DASEAA010000000
VERSION     DASEAA010000122.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 8023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 8023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..8023
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.122"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..715
                     /locus_tag="U0342_002131"
     CDS             <1..715
                     /locus_tag="U0342_002131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463826.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM2423474.1"
                     /translation="VKHVSVREFKNERLSDEIKQHLLTAARSASSSHFVQSFSILEIT
                     DEKLRKELAEITNSASYVNQTGTFYVFVGDLYRQSKLLLENNRTLDGLRNMESLLVSV
                     IDATIAAQNMVIAAESLDLGICYIGGIRNDIEKVAELLNLPPFTIPVFGLTVGVPEYK
                     NQVKPRLLLENQVGENQYPHEQFTDLKAYEELTKDYYALREKNQHQTSWGDKNVAFFE
                     EIRRPEIAGFLKKQGFTLD"
     gene            926..1564
                     /locus_tag="U0342_002132"
     CDS             926..1564
                     /locus_tag="U0342_002132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463827.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF998 domain-containing protein"
                     /protein_id="HEM2423475.1"
                     /translation="MKFLKKYGFYFLLLGVLSDFLTPYILGIFYPELNQMTRVMSVFG
                     DVASPVRGAFLVWSVVSGVFFVLALPAIYQSVVKTSRTLAILLASAIGLYGIGDCIFT
                     GLFSIDTEQASWTFSTWVHNIGSGLGYAGFLIFPLFLVILYRKTGDKTRSNIYLVLLI
                     VSLLSAGVYGLARIPAVNDLPVLDKIGFCQRISFFFNYLPIVVFGIDRIRKP"
     gene            complement(1569..3440)
                     /locus_tag="U0342_002133"
     CDS             complement(1569..3440)
                     /locus_tag="U0342_002133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antiterminator"
                     /protein_id="HEM2423476.1"
                     /translation="MTISERQRSLLEKLNDSQKTVTAKALSEMLGVSSKTVRNDIVQI
                     NQSFSSTIIASKAGKGYFLTPNEQLSQMNLTKNNENLHFELLRHFIEQDHTNFYDLAD
                     QFFISESTLSRIIKELNAVIAEKDESLCIIRKNNELLTEGGEEEKRRIFNLFLNQEIE
                     NHQLSLDKYADYFDYCNLKQLSELIIAYHKKNDFFMNDFSTISFILHIAVLIERISMG
                     SYIERTALLEQDKTSLEMAEHLTETLEEELHIDIPTQELSYIARLYSGKLTTTSTIDA
                     QVFGSVVTRLLEAVDQNFHIDFSADEKIATYLVAHISALYKRANHKQYLTNPLTEELK
                     NKFPFIYNVSVYASAFIQKELAITFPDDEIAYIALHFLSASETINHGKKRKILLVSPY
                     GAGSQRLIHNQLKKIADFSIDLLVSQSIFDIKQFTLDKEIHLIITAEPLNLTTDIPVY
                     HYDLLLTETDLQKIKHILETKPKADSISRKFFKKELFFPKQNFKSKEEVITFLCEQLT
                     AFDYCDSDYVSKVFEREQLSSTCYGNYYAIPHAIQRSAKKNAVAVCALDKPIDWGGNR
                     VKLVLLLTMKEERDNSFEELFGQLVTILNERSFVKKLAKQEDFQQFIELCEQKTLDS"
     gene            complement(3539..4852)
                     /locus_tag="U0342_002134"
     CDS             complement(3539..4852)
                     /locus_tag="U0342_002134"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463829.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2423477.1"
                     /translation="MRFNTISEKMDQYISPLANKLSQQRHLKATRDAFMSMLPITLFG
                     SIPIILKAAPVTDDTKNGFLLAWANFAEKYDLILNWISGITLGAMSLYICVGITYYLC
                     KHYHEDFLRPLMFSIAGFFMLVLNPIKMGWDGKEVDISFLDGRGILLSIFVAIVTVEG
                     YHWMRKKNVGRITMPDSVPASLSETFAALVPGIILMTFFSIIFIIFNLLDTTAIQFLY
                     EKMAPSFKAADSLPFTILSIFLVHLFWFFGVHDAALAGILGPIRDGNLSINAAEKMAG
                     QDLTNIFTTPFWTYFVIIGGSGSVLALAFLMMRSKSKQLSTVGKVGFLPSIFGISEPL
                     IFGTPLMLNPIFFFPFIFTSVFNGVITYLCMYFGIVGKTFAVFSWQMPAPIGAFLSTM
                     DWRAIVLVFILIFLNGLMYYPFLKVYEKNLVALEKEAEEENIAAN"
     gene            complement(4857..5147)
                     /locus_tag="U0342_002135"
     CDS             complement(4857..5147)
                     /locus_tag="U0342_002135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463830.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2423478.1"
                     /translation="MKNIMLVCNAGMSTGMLAKKIEAASGNTLNVTAYSESEYTDYLD
                     GFDLVLIGPQIRFLMPQIKQAVSVPVHAISPVKYGIMDGKGVYEDIQKLIGG"
     gene            complement(5164..6555)
                     /locus_tag="U0342_002136"
     CDS             complement(5164..6555)
                     /locus_tag="U0342_002136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463831.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2423479.1"
                     /translation="MNNNFLWGGATASYQCEGAWDVDGKAESMWDYYLHEAGLENGDV
                     ASDHYHRYEEDIRMMKEGGQNSYRFSLSWPRIIKNRQGDINLKGIEFYQNLLDTCKKY
                     DIEPFVTLYHWDLPQYWEETGGWLDHDVCAAFEHYAKVCYDHFGDKITNWTTFNEPKW
                     FVANGYKIGNYPPGYQDTQKTMIAAYNVMYASALGVKAFKEGGYPGQIGIVHSYTPVN
                     GVDESIETKIAMRYADNYCNNWILDTAALGEFPVDLIAELAKSHDISFMKTDELQTIK
                     QNTVDFIGLNYYSRTLVKPYTGGETQLQFNHSGKKGESKVLIKNWFEQVKDPANETTE
                     WDTEIYPKGLQDGLIEAYERYQLPLYVTENGIGVREDVSVAKVDDAYRIAFMNDHINA
                     IFNAIDAGCDVRGYYAWSPFDLYSWKNGVEKRYGLVAVDFKNNQIRKPKASYYWFKEM
                     IESQGKLIKRREF"
     gene            complement(6548..6889)
                     /locus_tag="U0342_002137"
     CDS             complement(6548..6889)
                     /locus_tag="U0342_002137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2423480.1"
                     /translation="MTDSNELTTELDSMAIILHAGNAKSCAFEALKEVKLQNIEAFTQ
                     KITEAKDEIKLAHRAHAELLRKLSSENRMREVDLLLVHAEGHLSSTDIAVEMIRELGE
                     IYQWKWSLSNE"
     gene            7056..7340
                     /locus_tag="U0342_002138"
     CDS             7056..7340
                     /locus_tag="U0342_002138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463833.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423481.1"
                     /translation="MKKTVHGWEIISNLDIRLYQDEAGGVVILLDKDGFGDQVPVLLN
                     FDDDGVDIKALSHLTKSVRVLLDKKVRIEWHDEYFEERTQAMEYIEVERD"
     gene            7376..7930
                     /locus_tag="U0342_002139"
     CDS             7376..7930
                     /locus_tag="U0342_002139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463834.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423482.1"
                     /translation="MSKKLVSIIFLGICLLLVGCGKEVVDSKYTGKWKLESSGIGMSD
                     GSNYKETDAAGKVSLDLDIDAEGNVKELYIDDAVAITNSYKLKKKGDDEYQYDGTLIS
                     KKVYSYETESDKENVETMLKFLKSKNNVKITKNEQKGDEYHIDVKADEKDFVFSLEMQ
                     SGKLIFKKVDTKEKVLIKETYKKN"
BASE COUNT         2322 a         1361 c         1784 g         2556 t
ORIGIN      
        1 ggttaaacat gtttcagtaa gagaatttaa aaatgaaaga ttatcagatg aaatcaaaca
       61 acatttatta acagctgcga gaagtgcatc tagttcgcat tttgtgcaat ctttttctat
      121 tttagaaatc acagatgaaa aactaagaaa ggaactagct gaaattacaa atagtgcttc
      181 ttatgtaaat caaacgggga ccttttatgt gtttgtaggg gatttatacc gacaatcaaa
      241 acttttactg gagaataata gaactttaga tgggttgaga aatatggaat cattactcgt
      301 ctcggtgata gatgctacaa ttgcagctca aaatatggtt attgctgctg agtctcttga
      361 tttaggaatc tgttatatcg gtggaataag aaatgatatt gaaaaagtag ctgaattgct
      421 aaacttacca ccatttacga tacctgtttt cggattaact gtaggcgttc cagaatataa
      481 aaatcaagta aaaccacggc tattactaga aaatcaagta ggagaaaatc aatatccaca
      541 tgaacaattt acggatttaa aagcgtatga ggaattgacc aaagattatt atgctttacg
      601 tgaaaaaaat cagcatcaaa cttcatgggg agacaagaat gtagcgtttt ttgaagaaat
      661 acgaagacca gaaatagctg gctttttgaa aaaacaaggg tttacattgg attaattaat
      721 tttcgttgta gggcgtataa aaaataatag tattaaattt atgagaggct ggaagagtat
      781 tttttccggc tttttatttg attggggcta ttattttgtc atagaaagct taaactagat
      841 tagatgggga tagatttgta taattaatat ggagttaaaa ttacactaat atatccaaaa
      901 taaatttcat aaaaggagga tccaaatgaa atttctaaaa aaatacggct tttacttttt
      961 attactcggc gttttgagtg attttctaac gccttacata cttggaattt tttacccaga
     1021 attaaatcaa atgacgcggg ttatgagtgt gtttggggat gtggctagtc cggtgcgggg
     1081 agcgtttttg gtttggtcgg tggtgtctgg ggtgtttttt gtgctcgctt tgccggcgat
     1141 ttatcagagc gttgttaaaa cttcgcggac tttggcgatt ttgcttgctt ctgcgattgg
     1201 tttgtatggg attggcgatt gtatttttac cgggttgttt agtattgaca cggagcaggc
     1261 gagttggaca ttttcgactt gggtgcataa tattggctcg gggctcggtt atgcgggatt
     1321 tttgattttt ccgttgtttc tggtcattct ttaccggaaa actggcgata aaacccgcag
     1381 caatatctat ctagttttac tcattgttag tttgctgtcg gctggtgttt atgggcttgc
     1441 gcggattcct gctgtgaatg acttgccggt tttagataaa attggttttt gtcagcggat
     1501 tagtttcttt tttaattact taccgattgt tgtttttgga attgatcgga ttagaaaacc
     1561 ctagattttc aggaatctag ggttttttgt tcgcaaagtt cgataaattg ctggaagtct
     1621 tcttgttttg ctagtttttt gacgaagctg cgttcgttta agatggttac gagttggccg
     1681 aataattctt caaaagagtt gtcgcgttct tctttcatag tgagtaatag gacgagtttg
     1741 acgcgatttc ctccccagtc gattggttta tcaagtgcgc atacggcgac ggcatttttc
     1801 ttcgcgcttc gctggatggc gtgcgggatg gcgtagtagt tgccgtaaca ggtgctagat
     1861 aattgttcgc gctcaaacac ttttgaaaca tagtcggagt cgcagtagtc gaatgcagtt
     1921 aactgttcgc aaagaaacgt aattacttct tcttttgatt tgaagttttg ttttgggaag
     1981 aacagctctt ttttgaaaaa ttttctggaa atcgaatcgg ctttgggctt agtttctaaa
     2041 atgtgcttga ttttctgcaa atctgtttct gttaaaagta aatcgtaatg atagactggg
     2101 atgtcagttg ttaggtttaa tggttcggcg gtgataatta aatggatttc tttgtctaag
     2161 gtgaactgct ttatatcaaa aatagattga gaaacgagca agtcaatcga aaaatcggca
     2221 attttcttaa gttgattatg aattaaacgt tggctacctg cgccgtacgg tgaaaccaag
     2281 aggatttttc tttttttacc gtgattaatc gtttccgaag cggataaaaa atgtagcgcg
     2341 atataagcga tttcgtcatc tgggaaagtg atcgcaagct ctttttgaat aaaggcagag
     2401 gcataaacac tgacattata aataaatggg aacttgtttt ttaattcttc agtgagtggg
     2461 ttggttaaat attgtttgtg attggctctt ttataaaggg ctgaaatgtg agccactaga
     2521 taggtggcta ttttttcgtc agctgaaaag tcaatatgga aattttggtc cactgcttca
     2581 aggagccgag tgacaacgct gccaaaaact tgtgcgtcaa tggttgaagt tgtcgttagt
     2641 ttgccggaat aaagccgggc gatatagctt agttcttggg ttggaatatc gatgtgcagt
     2701 tcttcttcta acgtttcggt taggtgctcc gccatttcaa ggctagtttt atcttgctcg
     2761 agtaaagcgg ttcgctctat atagctgccc atactaatgc gctcaattaa aacggcgata
     2821 tgcaagatga acgaaatcgt tgagaaatca ttcataaaaa aatcgttctt tttgtggtag
     2881 gcaataataa gctcggaaag ttgctttaga ttgcaataat caaagtaatc ggcgtattta
     2941 tctaggctta attgatggtt ttcgatttcc tgattgagga atagattgaa gatgcggcgc
     3001 ttttcttctt cgccgccctc ggttagtagt tcgttgtttt ttcgaataat acatagcgac
     3061 tcatcttttt cagcgataac cgcgttgagc tctttaataa tacgagataa cgtcgattcg
     3121 ctaatgaaaa attggtccgc taagtcatag aaattagtat gatcttgttc gataaaatgg
     3181 cgtaataatt caaaatgtag attttcgtta tttttggtta gattcatttg tgaaagctgc
     3241 tcgtttggtg ttagaaagta gccttttcca gcttttgatg cgatgattgt ggaactaaat
     3301 gactggttaa tttgcacaat gtcatttcgc acagttttgg aagaaacgcc taacatttct
     3361 gaaagtgctt ttgctgttac tgtcttttgg ctgtcgttaa gcttttctaa caatgaacgt
     3421 tgcctttctg aaatagtcat tatatccccc ctaattctcc cttaacctat tgttattata
     3481 caacaccaaa tagagaaaga gacgagtttt tttgtcccaa tctctattta agtggctatt
     3541 aattagcagc gatgttttct tcttcggctt ctttttctaa agcgacaagg tttttctcat
     3601 acacttttag gaatgggtag tacattaggc cgtttaagaa aatcaggatg aatacgagaa
     3661 cgatggctcg ccagtccatg gtggatagaa atgctccaat tggtgcgggc atttgccagg
     3721 agaagacggc gaacgttttt ccgacaatcc cgaaatacat acaaagatac gtgatgacac
     3781 cattgaatac ggatgtgaaa atgaacggga agaagaaaat cggattcagc attagtggtg
     3841 ttccgaaaat tagcggctca gaaattccga atatggaagg taagaagccg actttcccga
     3901 cggtgcttag ttgtttggac ttggatcgca tcattaaaaa ggcaagtgcg agaacggaac
     3961 cagaaccacc gatgataacg aaatatgtcc agaatggtgt cgtgaaaata ttcgtcaaat
     4021 cttgaccagc cattttttca gcggcgttga ttgaaaggtt tccgtcacga attgggccta
     4081 gaattccggc aagtgcggca tcgtggacac cgaagaacca gaataagtga actaggaaaa
     4141 tacttagaat cgtgaatggt aagctatcgg ctgctttgaa gctcggcgcc attttttcat
     4201 ataagaattg gatggcagtt gtgtctagta ggttgaaaat gataaagata atcgagaaaa
     4261 aggtcattaa aataatacca ggaactaagg ctgcgaatgt ctcggatagt gaggctggaa
     4321 cgctatcggg catggttatt cgaccgacat ttttcttgcg catccagtga taaccttcta
     4381 cggtaacgat ggcgacgaaa atcgagagta atattccgcg tccatcaagg aaactaatgt
     4441 cgacttcttt gccgtcccaa cccattttga ttgggttaag tacgagcata aagaaaccgg
     4501 cgatagaaaa catgagtggg cgtaagaaat cttcgtggta gtgtttgcat aaataatacg
     4561 tgataccgac gcaaatatat aacgacatgg cgccaagtgt gattccgcta atccaattta
     4621 ggattaaatc atatttttca gcaaagttag cccaagcaag caggaaacca tttttcgtat
     4681 catctgtgac tggagccgct ttcaaaataa tcggaattga accaaacaat gtaattggca
     4741 gcatggacat aaaggcatct ctggttgctt tcaaatggcg ttgctggcta agtttgttag
     4801 ccagcgggga aatatattga tccatttttt cgctaatggt attaaatcgc atgtttttat
     4861 cctcctatta atttctggat gtcttcgtaa acccctttgc catccatgat gccgtatttt
     4921 acgggtgaaa tggcatggac tgggacgctg acggcctgtt taatttgtgg cataaggaaa
     4981 cggatttgag gcccgataag aacgaggtcg aaaccgtcca aataatcggt atactcggat
     5041 tcgctataag cagtgacgtt taatgtgttg ccagaagcgg cttctatttt tttcgcaagc
     5101 attcctgtag acataccagc attacaaact aacatgatat ttttcatttt cctgctcctt
     5161 tttttaaaat tctcttcgtt tgatgagttt tccctgactt tcaatcattt ctttgaacca
     5221 gtagtaggaa gcttttggtt ttctgatttg gttgtttttg aaatcaactg ctacaagtcc
     5281 gtaacgcttt tcgacaccat ttttccaaga gtaaaggtcg aacggggacc aagcgtagta
     5341 gccgcgaacg tcacaaccag catcgattgc gttgaaaatg gcgttaatat ggtcgttcat
     5401 aaaggcgatt cggtaggcat catctacttt tgccactgaa acatcttcgc gaacaccaat
     5461 gccgttttct gtcacataaa gtggtaattg atagcgttcg taagcctcga ttaagccatc
     5521 ttgtaagcct tttggataaa tttctgtgtc ccattcggtt gtttcgttgg cgggatcttt
     5581 cacttgttcg aaccagtttt tgatgagaac tttactttcg ccttttttac cgctgtggtt
     5641 gaattgtagt tgggtttcgc cgccagtgta tggtttaacg agcgtgcgcg aatagtaatt
     5701 taagccgatg aagtcgacag tgttttgttt aattgtttgt agttcgtctg ttttcataaa
     5761 gctgatgtcg tgcgattttg ctagttcggc aatgaggtcg accgggaatt cgccaagtgc
     5821 ggctgtgtcg agaatccagt tgttgcaata gttatcagcg tagcgcatcg cgattttcgt
     5881 ttcgatactt tcatcgacac cgttcaccgg cgtgtagctg tgaacaatac caatttgccc
     5941 tgggtagcca ccttctttaa aagccttcac gcctaaagca ctcgcgtaca ttacattata
     6001 agcggcaatc atcgtttttt gcgtatcttg ataaccgggc gggtagttgc cgattttata
     6061 tccgttagca acaaaccatt tcggctcgtt aaacgtagtc caattcgtga ttttatcgcc
     6121 aaaatggtca taacaaacct tggcataatg ctcaaatgcg gcgcaaacat cgtgatccaa
     6181 ccagccacca gtttcttccc aatattgcgg caaatcccaa tgataaagtg tcacaaacgg
     6241 ctcaatatca tattttttac acgtatctag caagttttgg taaaattcga tcccttttaa
     6301 gttgatgtca ccttgcctat ttttaataat ccgcggccaa gataaggaaa aacgatagga
     6361 attttgcccg ccttctttca tcatccgaat gtcttcctcg tagcggtggt agtgatcgct
     6421 cgccacatcg ccattctcaa gacccgcttc gtgcaagtag tagtcccaca tcgattccgc
     6481 cttgccatcc acatcccaag caccttcaca ttgataagag gccgttgcac ctccccataa
     6541 aaagttatta ttcattagat aaactccatt tccattgata aatttctccc agttcccgaa
     6601 tcatttccac ggcaatatcc gtagaagaca agtgaccctc cgcatgaaca agcagtaaat
     6661 ccacctctct cattcggttc tctgaagata gttttcgtaa aagttccgcg tgcgctcggt
     6721 gcgccagttt aatctcatct ttcgcttcag taattttctg cgtgaaagct tcgatgtttt
     6781 gcagttttac ttctttcagt gcctcaaaag cacaactttt cgcattcccg gcgtgtaaga
     6841 tgatcgccat ggaatccagt tctgttgtta gttcgttgct atctgtcacg taaagacctc
     6901 cttttgattt gtctttacta tagctggaaa aatgggggag gtgaaattat tatttgccac
     6961 tttggaagtg gaaattggtt taggtttgga aattattgat tactaggata tgatgatagt
     7021 tagagagaaa atatgacata ggagatgaat aaatgatgaa aaaaacagta cacgggtggg
     7081 aaataatatc taatttagac atacgattat accaagatga agctggtggg gttgtgattt
     7141 tactagataa agatggtttt ggtgatcaag tgccagtgct attgaatttt gatgatgatg
     7201 gagtagatat aaaagctctt tcgcatttaa caaaaagtgt tcgagttttg ctggataaga
     7261 aggtgcggat tgaatggcat gatgagtatt ttgaagagag aacgcaagca atggagtaca
     7321 tcgaggtgga acgggattaa ccgttaatta tatacaaaaa aaggagagca acaagatgag
     7381 caaaaagtta gtaagtatta ttttcttagg gatttgtctt ttgttagttg gttgtggtaa
     7441 agaggttgtt gatagtaagt ataccggaaa atggaagttg gaatcgtcgg ggattggtat
     7501 gagcgatgga tcaaattaca aggaaacgga tgcagcgggt aaagttagtc ttgacttgga
     7561 cattgatgca gagggaaatg taaaagaatt gtatattgat gatgcagttg ctataactaa
     7621 ttcttataaa ttaaagaaaa aaggtgacga tgaatatcaa tatgatggta cattgattag
     7681 caaaaaagta tacagttatg aaactgaaag tgataaagag aatgtagaaa caatgctaaa
     7741 atttcttaaa tccaagaata atgtcaaaat aaccaaaaat gaacaaaaag gggatgaata
     7801 tcacatagat gtcaaagcag atgaaaaaga tttcgtattc tctttagaaa tgcaaagtgg
     7861 aaaattaatt ttcaaaaaag tcgatactaa agagaaagtt ttgattaagg aaacctacaa
     7921 gaaaaattaa attattagaa gcgagaagcg gaagtccgtt gtaaccacct attttttaaa
     7981 atttatttgt gaagactatt ctttcgaggg tcctcgggag gat
//
LOCUS       DASEAA010000123         7972 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.123, whole genome shotgun sequence.
ACCESSION   DASEAA010000123 DASEAA010000000
VERSION     DASEAA010000123.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7972)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7972)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7972
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.123"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            62..1594
                     /gene="mpl"
                     /locus_tag="U0342_002140"
     CDS             62..1594
                     /gene="mpl"
                     /locus_tag="U0342_002140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc metalloproteinase Mpl"
                     /protein_id="HEM2423483.1"
                     /translation="MKSKLICIIMVIAFQAHFNMAVKADSVGEERLRNNIQAKRNPAD
                     LKALPDSCEAKDFYKNFKILDMTKDKLGVTHYTLALSSDGYLTDNDEIKVHVTPDNKI
                     AFINGDLQQGQLRITNQIKITEKNAIEKAFEAIGQSEAHVKSYIGNPVKEKEIIINSR
                     TKRLVYNIKLIFAEPEVASWIIQVDAETGAILKKQNMLSEVERADTHKDFQALGKGAN
                     RLLQRPLHVMKINDLFYLVDRTHKGLIRTFDLNHKTDASFGKVVSNKTNMFTDPEFSS
                     AVDAHFYASEVYDYYKNVHQLESLDGKGGEIDSFVHYGLNCNNAFWDGREILYGDGDK
                     KNFKPFSCAKTIVGHELTHAVIQYSAGLEYEGQSGALNESFADVFGYFIAPNHWLIGE
                     DVCVRGLRDGRIRSIKDPDKYNQAAHMKDYESLPITEEGDWGGVHFNSGIPNKAAYNT
                     ITKLGKEKTEQLYFRALKYYLTKKAQFTDAKKALQQAAKDLYGEDASKKVAEAWEAVG
                     VN"
     gene            1794..3713
                     /gene="actA"
                     /locus_tag="U0342_002141"
     CDS             1794..3713
                     /gene="actA"
                     /locus_tag="U0342_002141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="actin assembly-inducing protein ActA"
                     /protein_id="HEM2423484.1"
                     /translation="MGLNRFMRAMMVVFITANCITINPDIIFAATDSEDSSLNTDEWE
                     EEKTEEQPSEVNTGPRYETAREVSSRDIEELEKSNKVKNTNKADLIAMLKAKAEKGPN
                     INNNNSEQSENVAINEEASGSDRPAIQVERRHPGLPSDSAAEIKKRRKAIASSDSELE
                     SLTYPDKPTKATKKKVAKASVTDTSESDLDSSMQSADESTPQPLKANQQPFFPKVFKK
                     IKDAGKWVRDKIDENPEVKKAIVDKSAGLIDQLLTKKKNEEVNASDFPPPPTDEELRL
                     ALPETPMLLGFNAPATSEPSSFEFPPPPTDEELRLALPETPMLLGFNAPATSEPSSFE
                     FPPPPTEDELEIMRETAPSLDSSFTSGDLASLRSAINRHSQNFSDFPPMPTEEELNGR
                     GGIPTSEEFSSLNSGDFTDDENSETTEEEIDRLTDLRDRGTGKHSRNAGFLPLNPFTS
                     SPVPSLTPKVSKISAPALITDVTKKAPFKNPPQPLNVFNKKTTTKTAPKKITPVNTAP
                     KLAALPITKAQETELGENKAPFIEKQAETNNRPIDMPSLPVIQKEVTERNKEEMKPQT
                     EEKVVGESEPANNVNGKKRSAGIEEGKLIAKSAEDEKAKEEPVNHTTLILAMLAIGVF
                     SLGAVIKIIQLRKNS"
     gene            3749..4618
                     /gene="plcB"
                     /locus_tag="U0342_002142"
     CDS             3749..4618
                     /gene="plcB"
                     /locus_tag="U0342_002142"
                     /EC_number="3.1.4.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylcholine phospholipase C"
                     /protein_id="HEM2423485.1"
                     /translation="MKFKKVVLGMCLTASVLVFPVTIKASACCDEYLKPPAAPHDIDS
                     KLPHKLSWSADNPTNTDVNTHYWLFKQAEKILAKDVDHMRANLMNELKNFDKQIAQGI
                     YDADHKNPYYDTSTFLSHFYNPDKDNTYLPGFANAKITGAKYFNQSVADYREGKFDTA
                     FYKLGLAIHYYTDISQPMHANNFTAISYPPGYHCAYENYVDTIKHNYQATEDMVVKRF
                     CSNDVKEWLYENAKRAKADYPKIVNAKTKKSYLVGNSEWKKDTVEPTGARLRDSQQTL
                     AGFLEFWSKKTNE"
     gene            4690..5013
                     /locus_tag="U0342_002143"
     CDS             4690..5013
                     /locus_tag="U0342_002143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463737.1"
                     /note="This small protein, a possible lipoprotein, is
                     found in Listeria monocytogenes; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5502 family protein"
                     /protein_id="HEM2423486.1"
                     /translation="MYIKGRLIFFFVMFVIALCSVLILLIIKMSVWKEEPFNLSDAKE
                     IECLGSCKIKNTNQKIHFFSIKKNLFEEKGNMAGILNEHERKGADKSIFIVILDDEKG
                     IANEE"
     gene            5146..5607
                     /locus_tag="U0342_002144"
     CDS             5146..5607
                     /locus_tag="U0342_002144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YehR family lipoprotein"
                     /protein_id="HEM2423487.1"
                     /translation="MKMLKKGTTVLFVMIMAVMLVACGDKEETKTYSLSQNGVDSKLT
                     YTYKGDKVTKQTAENTMSYASLGVASKEDAEKMLKATSDKFQGIDGLKEKIEYKDDKA
                     IETLEVDYTKISSEDMNKIPGMSSNGDTSKGISMEESAKMLESQGYKEVSK"
     gene            complement(5660..5992)
                     /locus_tag="U0342_002145"
     CDS             complement(5660..5992)
                     /locus_tag="U0342_002145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="putative heavy metal-binding protein"
                     /protein_id="HEM2423488.1"
                     /translation="MIVTTSPNIEGKQIIEYKKIVFGEVITGVNFMKDIGAGLRNFFG
                     GRSQGYEDELINAREEAIREMEQRAKDIGANAVIGVDIDYEVLGADNGMLMVTASGTA
                     VVIEAQDY"
     gene            complement(6059..6778)
                     /locus_tag="U0342_002146"
     CDS             complement(6059..6778)
                     /locus_tag="U0342_002146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM2423489.1"
                     /translation="MLFLLYLIYSRGVTRTITFDQLNTELQALENPNTIKIFRNHGCP
                     DSLDLYGLKIGDLKKIIRREKLTKNHELAVELIESNNSDLIYLGLLAINPDKITTEQI
                     EKWNIIFRETWSQLTFGLASIVSKRDDALLFAKTWIESDYDLTKSMGWQIYSEHINNL
                     PEAEALLQRAKETLQTETNRTRYSMNGFIITCGIYKDDLHEKAMEAAKSVGKVHVNLG
                     NTACKVPDAISYIEKARNRTK"
     gene            complement(6811..7752)
                     /locus_tag="U0342_002147"
     CDS             complement(6811..7752)
                     /locus_tag="U0342_002147"
                     /EC_number="1.1.1.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="L-lactate dehydrogenase"
                     /protein_id="HEM2423490.1"
                     /translation="MKDHQKIILVGDGAVGSSYAFACVNLSIGQEFGIIDIDKDRTIG
                     DAMDLSHAVPFSTPKKIYSANYSDCHDADLVVVTAGTAQKPGETRLDLVNRNIKIMKG
                     IVDEVMASGFDGIFLIASNPVDILTYATWKFSGLPKERVIGSGTSLDTARFRMSIADY
                     LKVDARNVHGYILGEHGDTEFPAWSHTTVGGLPITEWISEDEQGAMDTIFVSVRDAAY
                     EIINKKGATFYGVAAALARITKAILNNENAILPLSVYLDGHYGMNDIYIGAPAVVNRQ
                     GVRHIVEMNLNDKEKEQMKNSADTLKKVLDDAMKQID"
BASE COUNT         2735 a         1395 c         1600 g         2242 t
ORIGIN      
        1 tctgtcagat tagttgtagg tggcttaaac ttacttttac gaattgaaaa ggagcggtga
       61 aatgaagagt aaacttattt gtatcatcat ggtaatagct tttcaggctc atttcaatat
      121 ggcggtaaaa gcggattctg tcggggaaga aaggctccga aataatatac aagccaaaag
      181 gaaccctgct gatttaaaag ctttgccaga ttcctgcgaa gcaaaagatt tttataaaaa
      241 ttttaaaatt cttgatatga caaaagataa gctaggcgtt acgcattata cgctcgcgct
      301 aagttctgat ggttacttga ctgataatga tgaaataaag gtccacgtca caccggataa
      361 taaaatcgct tttataaatg gagatttaca gcaagggcag cttaggatta ctaatcaaat
      421 aaaaattaca gaaaaaaatg ctattgaaaa agcatttgaa gccattggtc agagtgaagc
      481 tcatgtgaaa agttatattg gaaatccagt gaaagaaaaa gaaatcatca tcaattccag
      541 aacgaaacgc ttagtttata atataaaatt gatttttgct gagccggaag ttgcgagttg
      601 gattattcaa gtggatgcag aaaccggcgc aattttaaaa aaacaaaata tgctttccga
      661 ggtagagcgg gctgataccc acaaagattt tcaagcgctt ggtaaaggag ctaaccgatt
      721 actccagaga ccattacatg tcatgaaaat aaatgacctg ttttacttag tggatagaac
      781 tcataaagga ctcataagaa cttttgattt aaaccataaa acggacgcat cttttggaaa
      841 agtggtgtcg aataaaacga atatgtttac ggatccggaa tttagttccg cggtggatgc
      901 tcatttttac gcaagtgaag tgtacgatta ctataaaaat gtccatcaac tagagagtct
      961 agatggtaaa ggtggagaaa ttgattcgtt tgttcattat ggcttgaatt gcaataatgc
     1021 tttttgggat ggccgagaaa ttctttatgg agatggggac aaaaagaatt tcaaaccatt
     1081 ttcatgcgcc aaaacgattg ttggtcatga actaacgcat gcggttatcc agtattcggc
     1141 aggattagaa tacgaagggc aatcaggtgc gctaaacgaa tcgttcgccg atgtctttgg
     1201 ttattttatt gcgccaaatc attggttgat tggtgaggat gtctgtgtgc gtgggttacg
     1261 agatgggcga ataagaagca tcaaagatcc tgacaaatat aatcaagcgg ctcatatgaa
     1321 ggattatgaa tcgcttccaa tcacagagga aggcgactgg ggcggagttc attttaatag
     1381 tggtataccg aataaagcag cctacaatac gatcactaaa cttggaaaag aaaaaacaga
     1441 acagctttac ttccgcgcct taaagtacta tttaacaaaa aaagcccagt ttaccgatgc
     1501 gaaaaaagca ctccaacaag cggcgaaaga tttatatggt gaagatgctt ctaaaaaagt
     1561 tgcggaagct tgggaagcgg tcggagttaa ctgattaaca aatgttagag aaaacttaat
     1621 tcttcaagtg atattcttaa aataattcat gaatattttt ttcttaaatt agctaattaa
     1681 gaagataacc aactgctaat ccaattttta acggaataaa ttagtgaaaa tgaaggccag
     1741 attttccttg ttctaaaaag gttgtattag cgtatcacga ggagggagta taagtgggat
     1801 taaatagatt tatgcgtgcg atgatggtag ttttcattac cgccaactgc attacgatta
     1861 accccgacat aatatttgca gcgacagata gcgaagattc cagtctgaac acagatgaat
     1921 gggaagaaga aaaaacagaa gagcagccaa gcgaggtaaa tacgggacca agatacgaaa
     1981 ctgcacgtga agtaagttca cgtgatattg aggaactaga aaaatcgaat aaagtgaaaa
     2041 atacgaacaa agcagaccta atagcaatgt tgaaagcaaa agcagaaaaa ggtccaaata
     2101 ttaataataa caacagtgaa caaagcgaga atgtggctat aaatgaagaa gcttcaggat
     2161 ccgaccgacc agctatacaa gtggagcgtc gtcatccagg gttgccatcg gatagcgccg
     2221 cggaaattaa aaaaagaagg aaagctatag catcatcgga tagtgagctt gaaagcctta
     2281 cttatccgga taaaccaaca aaagcaacta agaaaaaagt ggcgaaagcg tcagttacgg
     2341 atacttctga aagtgactta gattctagca tgcagtcagc ggatgagtct acaccacaac
     2401 ctttaaaagc aaatcaacaa ccatttttcc ctaaagtatt taaaaaaata aaagatgcgg
     2461 gtaaatgggt acgtgataaa atcgacgaaa atcccgaagt gaagaaagca attgttgata
     2521 aaagtgcagg gttaattgac caattattaa ctaagaagaa aaatgaagag gtaaatgctt
     2581 cggactttcc accaccgcct acggatgaag agttaagact tgctttgcca gagacaccga
     2641 tgcttcttgg ttttaatgct cctgctacat cagaaccgag ctcattcgaa tttccaccac
     2701 cacctacgga tgaagagtta agacttgctt tgccagagac gccaatgctt cttggtttta
     2761 atgctcctgc tacatcggaa ccgagctcat tcgaatttcc accgcctcca acagaagatg
     2821 aactagaaat tatgcgggaa acagcacctt cgctagattc tagttttaca agcggggatt
     2881 tagctagttt gagaagtgct attaatcgcc atagccaaaa tttctctgat tttccaccaa
     2941 tgccaacaga agaagagttg aacgggagag gtggtatacc aacatctgaa gaatttagtt
     3001 cgctgaatag tggcgatttt acagatgacg aaaacagcga gacaacagaa gaagaaattg
     3061 atcgcctaac tgatttaaga gatagaggaa caggaaaaca ctcaagaaat gcgggttttt
     3121 taccattaaa tccgtttact agcagcccgg ttccttcgtt aactccaaag gtatcgaaaa
     3181 taagcgcgcc ggctctgata actgacgtaa ctaaaaaagc accatttaaa aatccgccac
     3241 agccattaaa tgtgtttaac aaaaaaacta caacgaaaac agcaccaaaa aaaataaccc
     3301 ctgtgaatac cgcgccaaag ctagcagcac ttcctatcac gaaagcgcaa gaaactgagc
     3361 ttggggaaaa taaagcacca tttatagaaa aacaagcaga gacaaacaat cggccaattg
     3421 atatgccgag cctaccagta atccaaaaag aagttacaga aagaaataaa gaggaaatga
     3481 aaccgcaaac cgaggaaaaa gtggtaggag aaagcgaacc agctaataat gtgaacggaa
     3541 aaaaacgttc tgctggcatt gaagaaggaa aattaattgc taaaagtgca gaagacgaaa
     3601 aagcaaaaga agaaccagtg aaccatacga cgttaattct tgccatgtta gctattggcg
     3661 tgttctcttt aggagcggtt atcaaaatca ttcaattaag aaaaaatagt tgaagacgca
     3721 gaatgaaaga aaaagtgagg tgagtgatgt gaagttcaaa aaagtggttc taggtatgtg
     3781 cttgaccgca agtgttctag tctttcctgt aacgataaaa gcaagtgcct gttgtgatga
     3841 atatctaaag ccccccgcag ctccgcatga tattgacagc aaattaccgc ataaacttag
     3901 ttggtccgcg gataatccga caaatactga cgtaaatacg cactattggc tttttaaaca
     3961 agcagaaaaa atactagcta aagatgtaga tcatatgcga gctaatttaa tgaatgaact
     4021 taaaaatttc gacaaacaaa ttgctcaagg aatatatgac gcggatcata aaaatccata
     4081 ttatgatact agtacgtttt tatctcattt ttataatcct gataaagata atacttattt
     4141 gccaggtttt gctaatgcga aaataacagg agccaagtat tttaatcaat cggtggctga
     4201 ttaccgagaa gggaaatttg acacagcatt ttataaattg ggcctagcaa tccattatta
     4261 tacggatatt agtcaaccta tgcacgccaa taattttacc gcaatatcct atccaccagg
     4321 ctaccactgt gcatatgaaa attacgtaga taccattaaa cacaattatc aagcaacaga
     4381 agacatggta gtgaaaagat tttgctcaaa tgacgtgaaa gaatggctct atgaaaatgc
     4441 gaaaagggcg aaagcggact atccgaaaat agtcaatgcg aaaactaaaa aatcatactt
     4501 agtaggaaat tccgaatgga aaaaggatac agtggaacct actggagcta gactaagaga
     4561 ttcacagcaa actttggcag gctttttaga attttggtct aaaaaaacaa atgaataaca
     4621 atatttagga atatattctt atccactcgt tagcgggtgg atatatttta tggggaggaa
     4681 gtaagccgaa tgtatataaa agggaggtta atctttttct ttgtaatgtt tgtaatcgcg
     4741 ttatgttccg tattaatatt gctgataata aaaatgagcg tatggaaaga ggaaccattt
     4801 aatttaagtg atgcaaagga gattgagtgt cttggaagtt gcaaaataaa aaatactaat
     4861 caaaaaatcc atttcttctc cataaaaaag aatttgtttg aggaaaaggg caatatggct
     4921 ggaattttga atgaacacga gcgaaaagga gctgataagt ccattttcat tgtaatttta
     4981 gatgatgaaa aagggattgc aaacgaagag taaagttatg attagttgtg actttttcgt
     5041 gtcaatcaaa aaagtgttgt gagcaaatgt tcacaaaata tctattgtaa tagtgcagtt
     5101 tgttaggtac ccttgaatag aaaaaacaat gtaggaggaa catctatgaa aatgcttaaa
     5161 aagggtacaa cggttttatt tgtaatgatt atggcggtta tgttagtcgc gtgtggggac
     5221 aaagaagaaa cgaaaactta ctcactttcc caaaatggtg ttgattctaa attaacatac
     5281 acatataagg gagacaaagt tactaaacaa acagctgaga acacaatgtc atatgcttcg
     5341 ctaggtgttg cttcaaaaga agacgctgaa aaaatgctta aagcaacaag cgataaattc
     5401 caaggtattg atggtttaaa agaaaagatt gaatataaag atgataaagc tattgaaaca
     5461 ctagaagtag attacactaa aatctcttcg gaagatatga acaaaatccc tggtatgtct
     5521 tcaaacggtg atacttctaa agggattagc atggaggaat ctgcaaaaat gctagaatcc
     5581 caaggctata aagaagtttc aaaataaatt tgcaataaaa caagaagtat ccgattcatt
     5641 tggatacttc ttgttttatt caataatctt gcgcttcgat gacaacagct gtaccagatg
     5701 cagtgaccat aagcattccg ttatcagctc caagcacttc ataatcaatg tcaacaccga
     5761 taacggcatt tgcgccaata tctttcgcac gttgttccat ttcgcgaatt gcttcctcgc
     5821 gagcattaat aagttcatct tcatagcctt gcgaacggcc cccgaagaaa tttcgaagtc
     5881 cagctccaat atctttcatg aagttaacgc cggtgatgac ttcgccgaaa acgatttttt
     5941 tatattcgat aatttgttta ccttcaatat ttggtgaggt tgttacaatc atgagttatc
     6001 cctccagttt ttcttttatc atacctctta ctactttttc tagtcaaagg atatccggtt
     6061 atttcgtacg atttctcgct ttttctatat aagaaatagc atccggaact ttacacgctg
     6121 tatttccaag gtttacatga actttcccga ctgatttcgc agcttccatt gctttttcgt
     6181 gcaaatcgtc tttgtaaatt ccacaagtga taataaaacc gttcattgaa tagcgggttc
     6241 tattggtttc tgtttgcagc gtttctttcg cgcgttgaag taatgcctct gcttcaggca
     6301 aattgttaat atgttcgcta taaatctgcc agcccatgga tttagttaaa tcataatcac
     6361 tttcaatcca cgttttggcg aaaaggagtg catcatcacg tttgcttaca atcgatgcta
     6421 gtccaaaagt tagttgtgac catgtttcgc gaaaaatgat attccatttt tcgatttgtt
     6481 ccgtggttat tttgtcggga ttaatcgcta gcaaaccgag ataaatcaag tcactattat
     6541 ttgattcaat cagctctacg gcgagttcgt gattttttgt cagtttttct cggcgaataa
     6601 ttttctttaa atcaccaatt tttagtccgt aaagatctaa tgaatccgga cagccgtgat
     6661 tacgaaaaat tttaatcgta ttggggtttt ctaaggcttg tagctcggta ttaagttggt
     6721 caaaagtaat cgtacgcgtc actcctctcg aataaattaa gtataacaaa aaaagcatgc
     6781 gaaggcgcat gcttttagga tttgagaata ttagtcgatt tgtttcattg cgtcgtctag
     6841 aactttttta agtgtatctg cagagttttt catttgttct ttttctttgt cgtttaaatt
     6901 catttcaaca atatggcgaa cgccttgacg gttaacgact gcgggagcgc cgatataaat
     6961 gtcgttcata ccataatgac catctagata aacagaaagt ggtaagatcg cattttcgtt
     7021 atttagaatt gcctttgtaa tacgagctag agctgcagca acaccgtaga atgtagcgcc
     7081 ttttttatta ataatttcat aagctgcatc acgaacactt acgaaaatag tatccattgc
     7141 accttgttca tcttcgctaa tccattcagt gattggaaga ccgccgacag ttgtgtggct
     7201 ccatgctggg aattctgtat cgccgtgttc gccaaggatg taaccatgga cgttacgagc
     7261 atctactttt agatagtcgg caattgacat acggaaacgt gctgtatcaa ggcttgttcc
     7321 agaaccgata acacgttctt ttggaagacc tgagaatttc catgtagcgt aagttaagat
     7381 atctactggg ttagaagcga ttaagaagat accgtcaaat ccgctagcca ttacttcatc
     7441 cacgatgcct ttcatgattt taatattacg atttactaaa tctaaacgag tttcaccagg
     7501 tttttgtgca gtcccggcag ttacaacaac taagtccgca tcgtggcagt cgctataatt
     7561 tgctgagtag attttcttcg gtgtagaaaa tggaacggca tgacttaaat ccattgcatc
     7621 cccaatagtt ctgtctttat ctatgtcaat gataccaaat tcttgtccaa tgcttaagtt
     7681 tacacaagca aatgcgtaac tagaaccaac tgctccgtcg ccaactaaaa taattttttg
     7741 atgatctttc atttcgaatt cctcctataa aaaatctatt tactagtaca gtataacatg
     7801 aatttttcat ttgtgaagcg ttgaacgtcc tgaatttaaa aaagttgtta taataaattt
     7861 gtgaaaacgc tatagtacag tttggaagcg tccacattag cgaatagccg ctattttctg
     7921 tttacctttt attgagaatt ataaacctta caaatcaaaa ttaggctatt tc
//
LOCUS       DASEAA010000124         7961 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.124, whole genome shotgun sequence.
ACCESSION   DASEAA010000124 DASEAA010000000
VERSION     DASEAA010000124.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7961)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7961)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7961
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.124"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            119..904
                     /locus_tag="U0342_002148"
     CDS             119..904
                     /locus_tag="U0342_002148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate deacetylase"
                     /protein_id="HEM2423491.1"
                     /translation="MPKLIIDADDFGLSKAINHGIIESYKTGITTSTLLMPNLETAEH
                     AIALAKDHPDLFIGQHTNFLLGKPCTDPAEIPSLVDENGEFHRSKYYRANPELKFQYE
                     DVRTETIAQMERFKALTGHYPEHIDCHSIGDETVDQAFFDIAREFGIHTTLKYSGDKK
                     WPDQEGYLPITKLLESGALPYTNGGVSIENFLNDDFGLLKLAPNEIAEMHFDVGFLDQ
                     FVLDNSSYTLMRCRELATICDVRVRDWLLENGFELITFGDLQR"
     regulatory      935..1040
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
     gene            1127..1801
                     /gene="tenA"
                     /locus_tag="U0342_002149"
     CDS             1127..1801
                     /gene="tenA"
                     /locus_tag="U0342_002149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiaminase II"
                     /protein_id="HEM2423492.1"
                     /translation="MFVHGFQEEVGDLWQETLQHPFVQSLADGTLEKEAFYYYLLQDD
                     YYLSHFEKVIEKSVEQAGTAEIAAEMREVQRRLQQSELLMREQFYPRVGLTERDFSVR
                     KPAPTAYHYASHLYRMADFGSFGVTIAALLPCYALYADMGKMYEGARSSEPFYQELLD
                     SYVDENYQKVVLQQKRLVEQAASMADARELALMKQAFQISVEMEWAFFDMAYKKQNWR
                     GSVNYV"
     gene            1794..2603
                     /gene="thiM"
                     /locus_tag="U0342_002150"
     CDS             1794..2603
                     /gene="thiM"
                     /locus_tag="U0342_002150"
                     /EC_number="2.7.1.50"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463846.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hydroxyethylthiazole kinase"
                     /protein_id="HEM2423493.1"
                     /translation="MFDFMTLEKVWEKGPLVHNITNIVVANDSANGLLAIGASPIMAS
                     AKEEMDELAKMADVLVINIGTLDGELVTAMKIAGRAANVAGTPVVLDPVGVGATSYRR
                     KVVQELLAEIQFTAIRGNAGELAAIAGEAWEAKGVDAGVGSADVLSIAEKVANEWSTV
                     VIISGEVDVISDGTRFAKVANGSALLPRITGSGCLLSAVCGSFMAVQDDAFRASVEAC
                     ASYAVASEYAEIELERKLPGSFRPQFLDALASWSVEKTRAKAKIQESGEHK"
     gene            2600..3403
                     /gene="thiD"
                     /locus_tag="U0342_002151"
     CDS             2600..3403
                     /gene="thiD"
                     /locus_tag="U0342_002151"
                     /EC_number="2.7.1.49"
                     /EC_number="2.7.4.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional hydroxymethylpyrimidine
                     kinase/phosphomethylpyrimidine kinase"
                     /protein_id="HEM2423494.1"
                     /translation="MIFKQVLTIAGSDSGGGAGIQADIKTFQERKTFGMSVITAITAQ
                     NTLGVKAVHKIPVEMIREQCDAIAEDFQVSAVKTGMLADAEIIREVARNIRLHNFPNI
                     VIDPVMIAKGGTALLENEATQVLKDELLPLGTIITPNIPEAEEILGEKITTKAEIEQA
                     AKKIFDLGVKAVVIKGGHSEMSEAADFYYDGETTKWLTSERFDTPHTHGTGCTFSACI
                     AAELAKGNSLLDSVMVAKEFITSAIKYPLGIGHGHGPTNHFAYRLEDGK"
     gene            3400..4044
                     /locus_tag="U0342_002152"
     CDS             3400..4044
                     /locus_tag="U0342_002152"
                     /EC_number="2.5.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thiamine phosphate synthase"
                     /protein_id="HEM2423495.1"
                     /translation="MRAELAVYFIAGTQDIVRGTLPGVLEEALKAGITCFQYREKGAG
                     SLQTASERKEMALECQQLCAKYQVPFIINDDVALALEIGADGIHVGQNDEEIRQVIAS
                     CAGKMKIGLSVHSVSEAEEAERLGAVDYIGVGPIFPTISKADAEPVSGTTILKEIRRA
                     GIKLPIVGIGGINETNSAEVLTAGADGVSVISAITRSDDCYSVIKQLKNPGYPS"
     gene            complement(4071..5486)
                     /locus_tag="U0342_002153"
     CDS             complement(4071..5486)
                     /locus_tag="U0342_002153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2423496.1"
                     /translation="MHTNTGFPANFLWGGAAAANQFEGAYNVDGKGLSVQDVTPKGGF
                     GHITDGPTPDNLKLEGIDFYHRYKDDVKLFAEMGFKVFRTSIAWSRIFPNGDETEPNE
                     AGLQFYDDLFDELLAHNIEPLITLSHYETPLHLSKTYDGWVNRKMIDFYENYVRTVFN
                     RYKGKVKYWLTFNEINSILHAPFMSGGISTSPDKLSQKDLYQAVHHELVASALATKIG
                     HEIMPEAQIGCMVLAMPTYPLTSNPDDIIAVMEAERKNYFFSDVHVRGTYPGYMKRYF
                     RENNIELDVTEEDLEILKNTVDFISFSYYMSTTETADESKRKAGAGNILGGVQNPYLE
                     ASEWGWQIDPQGLRVVLNEFWDRYQKPLFIVENGLGAIDQLEKDENGNYTVNDDYRIN
                     YLSAHLSQVKEAIKDGVDLMGYTSWGCIDLVSASTAEMKKRYGFIYVDRNNDGTGTLN
                     RYKKKSFGWYKNVIATNGEDL"
     gene            complement(5700..6956)
                     /gene="vip"
                     /locus_tag="U0342_002154"
     CDS             complement(5700..6956)
                     /gene="vip"
                     /locus_tag="U0342_002154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell invasion LPXTG protein Vip"
                     /protein_id="HEM2423497.1"
                     /translation="MNKYFKNLATVLFTVSLLTTSITALPAMASAYEETHNASTIYIS
                     PLDAPHVGDTKITGKTTALSSFAIAIYTPEGRLTGTFFGTTNAAGTYAVDLSDFTYYD
                     PLGYEASGNVILEKGAMVRSMTETNSDLIKTVTINYNYIQTAINELFLNNDPTGTILA
                     ATDQNAINAVQEQINTVTSSEKETFQEQLNNAQQQLDARIAQEQAAIQAVNQLFLEDN
                     PANSIKAETTQDLIDQAQTLVDVLPASELKDTLQANIVKAQTELDERSKPVTPPKNDP
                     ETDNPEEPVTPVDPATPTPDEPSTPTDPATPTPDEPSTPTDPATPEKPEITTPENPES
                     TVVESDSSENEPEKSADSKIVNNPIQITSQATKTATKQATKQAKSSVTKTTTLPIPKT
                     GDTETTSSILFGTLMLASLALFRRKK"
     gene            7285..7944
                     /locus_tag="U0342_002155"
     CDS             7285..7944
                     /locus_tag="U0342_002155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GAP family protein"
                     /protein_id="HEM2423498.1"
                     /translation="MGSAFSAILSPAVGILISPFPIVGLILILLSNKARINSIFYTVG
                     WIVGNIAIFFIGLFLMSSAVSSSGDQSTLVKVVLIVLGALLILLGAHDFTKRPKNGEQ
                     AATPKWFEKMSNIKPGGAMMFAFVLSAVNPKNMLLSLTAGVSVGALNLSGGQETTATI
                     IFGIIACCSIYIPTIAFLLAGSKLNNALDSTRKWLIQNNSVIMAVLFLFIGLSVISKA
                     F"
BASE COUNT         2152 a         1410 c         1990 g         2409 t
ORIGIN      
        1 tgttaaagag atttggaaag attagcttat agttatgcta gttgataaga ggcaatcttt
       61 tgttaagaaa ttaataaatt tgtagtctgt ttttttaatt ataataagga ggttccccat
      121 gccaaaacta atcatcgacg cagacgattt cggtctatcc aaagccatca accacggcat
      181 catcgaaagc tacaaaaccg gcatcacaac atccacttta ctcatgccaa acctagaaac
      241 tgccgagcac gcaatcgctc tcgcaaaaga ccacccagac ctattcatcg ggcaacacac
      301 aaatttctta ctcggaaaac catgcacgga cccggcggaa atcccgtcac ttgtcgacga
      361 aaacggggaa ttccatcgtt ccaaatatta ccgggctaac cctgaactga aattccaata
      421 cgaagatgtg cgcacggaaa ccatcgctca aatggaacga ttcaaagcgc taactggtca
      481 ctacccagaa cacattgact gccactcaat cggtgatgaa acggttgacc aagctttctt
      541 tgatattgcg cgtgagttcg ggattcacac cactttaaaa tacagcggtg ataaaaaatg
      601 gccagatcag gaaggttatt taccaattac taaactattg gaatcgggcg cactcccata
      661 cacaaacggc ggtgtctcga ttgagaactt ccttaacgat gatttcggat tattaaaatt
      721 ggcgccaaac gaaatcgctg agatgcattt tgatgtcggt tttttggatc aatttgtgct
      781 ggataattct tcttatacgt tgatgcggtg ccgcgagctt gcgacgattt gtgatgtgcg
      841 ggtgcgggat tggcttcttg aaaatgggtt tgagcttatt acatttgggg atttacagcg
      901 gtaaaactct atgttatgat gaacgcaact taataagaaa aactaggggg gccgattctg
      961 gctgagatag gaaggtaatg ctttctgacc ctttgaacct gtttgttagt gcaagcgtag
     1021 ggaagtgaat gtgaaagtga ccggaaaatt tatcgcggct gctgtttctt tgcttatgct
     1081 aagggacagt gggcgctttt tttattgttc aaaaggagga gtttgagtgt ttgttcacgg
     1141 ttttcaagaa gaagtagggg atttatggca agaaacgttg cagcatccat ttgtgcagag
     1201 tttggcggat gggacgcttg agaaggaggc gttttactat tatttgctcc aggatgatta
     1261 ttacttgtcg cattttgaga aggtgattga gaaaagtgta gagcaagctg gaactgcgga
     1321 aattgctgcg gaaatgaggg aagtacaaag gcggcttcag caatcagagt tgttgatgcg
     1381 cgaacagttt tatccgcggg ttgggctaac ggagcgcgat ttttccgtgc gaaaaccggc
     1441 accaactgct tatcattatg cttctcacct ttaccggatg gcagattttg gcagttttgg
     1501 ggtaacgatt gcggcgcttt tgccgtgtta tgcgctttat gctgatatgg ggaaaatgta
     1561 cgaaggggcg cggagttcgg agccatttta tcaagagttg ttggatagtt atgtggatga
     1621 aaattatcaa aaagtggtgt tgcagcagaa gcggttggtg gaacaggcgg cgagtatggc
     1681 ggatgcgcgg gagcttgccc tcatgaagca ggcttttcaa attagtgtgg aaatggaatg
     1741 ggcatttttt gatatggctt ataaaaaaca aaattggcgt gggagtgtga attatgtttg
     1801 attttatgac gttggaaaag gtgtgggaaa aagggccgtt ggtacataat attacgaata
     1861 tcgtggttgc gaatgactcg gcgaacgggt tgcttgcgat tggtgcgtca ccgattatgg
     1921 cttctgcgaa agaggaaatg gatgaacttg cgaaaatggc ggatgtgctc gtgattaata
     1981 ttgggacgct agacggggag cttgttacag cgatgaaaat tgctggacgt gcggcaaatg
     2041 ttgctggaac gccggttgtg cttgacccgg tcggtgttgg tgcgacttca taccgtcgta
     2101 aagtggtgca agaattattg gctgaaatcc agtttacggc gattcgtgga aatgcgggag
     2161 agcttgcggc gattgctggt gaagcttggg aagcgaaagg cgtggatgcg ggtgttggtt
     2221 cggcggatgt gctgagcatt gctgaaaaag tggcgaatga atggagcacg gttgttatta
     2281 ttagcggcga agtagatgtg atttcagacg gaacgcgttt tgcaaaagtg gctaatggta
     2341 gcgcactgct tccaagaatt actggttctg gttgtttgct cagtgcagtt tgcggtagtt
     2401 ttatggccgt tcaggatgat gcttttcgag ctagtgtcga agcatgcgcg agttatgcgg
     2461 tggcttctga gtacgcggaa atcgaattag aaagaaaact tccaggttca tttcgaccac
     2521 aatttttaga tgctcttgct agttggtcgg tcgaaaaaac gcgtgccaaa gctaaaatcc
     2581 aagaaagtgg tgaacacaaa tgattttcaa acaagtatta acgatagctg gttcagattc
     2641 tggcggcggc gcggggatac aagcggatat caagacattt caagagcgta aaacctttgg
     2701 catgtccgtc atcacggcaa tcacggcaca aaacacgcta ggtgtaaaag cagtgcataa
     2761 aatcccggta gaaatgatcc gcgaacagtg cgacgcgatt gcagaggatt ttcaagtgag
     2821 cgccgtgaaa actggaatgc tagcagatgc agaaattatc cgggaagtgg cgcggaatat
     2881 ccgtttgcac aacttcccaa atatcgtcat tgatcctgtg atgattgcaa aaggtggaac
     2941 tgctttgctt gaaaacgagg cgacccaagt gttgaaagac gagcttttgc cacttggtac
     3001 gatcattacg ccgaatattc cagaagcgga agaaattctt ggtgaaaaaa tcacaaccaa
     3061 ggcggaaatt gaacaagccg ctaagaaaat ttttgattta ggtgtaaaag cggttgttat
     3121 taaaggtggg catagcgaaa tgagtgaggc ggctgatttt tactatgatg gcgaaacgac
     3181 aaaatggctg acgagcgagc gctttgatac gccgcatacg cacgggactg gttgcacttt
     3241 ttcggcatgt attgcagctg aacttgcgaa agggaattcg cttttggata gtgtcatggt
     3301 tgcgaaagaa tttatcacaa gtgcgattaa atatccgctt ggaattggtc acggtcatgg
     3361 tccaaccaac cattttgcct accgattgga ggatgggaaa tgagagctga actagctgta
     3421 tattttatcg ctggaacgca agatattgtt cgtggaacgt tgccaggtgt gttagaagaa
     3481 gcactgaaag ccggaattac ttgtttccaa tatcgcgaaa aaggagcagg ctcactccaa
     3541 actgcttccg aaagaaaaga aatggcgcta gaatgccaac aattatgcgc aaaatatcaa
     3601 gtgccattca ttattaacga tgatgtcgcc ctagccctcg aaatcggcgc ggacggcatc
     3661 catgtcgggc aaaacgacga ggaaattcgc caagttatcg cgagttgcgc tggaaaaatg
     3721 aaaatcggac tttcggttca ttcggttagt gaagcggagg aagcagaacg acttggagcg
     3781 gtggattata tcggcgttgg gcccattttt cccacgattt caaaagcgga tgcagagcca
     3841 gtgagtggaa cgacaatttt gaaagaaatt cgccgggctg gaattaagct accaattgtc
     3901 gggattggcg gaattaatga aacaaattca gctgaggttc tcacagcagg tgcggacggg
     3961 gtatcggtta tttcagcgat aactcggtcg gatgattgct actccgttat caagcaatta
     4021 aaaaacccag gttacccttc ttaaaaaggg caaacctggg tttctcattt ttataaatct
     4081 tcaccattgg tagcaataac gttcttgtac caaccaaaac ttttcttctt ataacggttt
     4141 agcgtacctg tgccgtcgtt gttgcgatcg acatagataa agccgtaacg ttttttcatt
     4201 tcagcagtgg aggcacttac aaggtcaata cagccccatg aagtgtaacc catcaagtca
     4261 acgccatctt taatcgcttc tttcacttgc gataaatgag cgctcaaata attaatacgg
     4321 tagtcatcat ttactgtgta gttgccgttt tcgtcttttt ctagttgatc gatagcgcca
     4381 agaccgtttt ctacgatgaa aagtggtttt tggtatctat cccagaattc gtttaggaca
     4441 acgcgcaagc cttgagggtc gatttgccag ccccattcgg atgcttctag gtaagggttt
     4501 tgtacgccgc ctaggatgtt tcctgcgcca gctttgcgtt ttgactcgtc agctgtttcg
     4561 gttgtgctca tgtaatagct gaaggaaatg aaatctactg tgtttttaag gatttctagg
     4621 tcttcttctg ttacgtctaa ttcaatatta ttttctctga aatagcgttt catgtagccc
     4681 ggataagttc cgcggacatg aacatcggag aagaagtagt ttttgcgctc tgcttccata
     4741 acagcgataa tatcatctgg gttggaagtt agcggataag ttggcattgc taggaccatg
     4801 cagccgattt gggcttcggg catgatttcg tgaccaattt ttgtagccag cgcgctcgcc
     4861 acaagttcgt ggtggacagc ttgatataag tctttttgag ataatttatc tgggcttgta
     4921 gaaataccgc cgctcatgaa tggtgcgtgt aaaatggagt tgatttcatt gaaagtgagc
     4981 caatatttta ctttgccttt atagcgatta aatacggtgc ggacatagtt ttcatagaag
     5041 tcgatcattt ttctatttac ccagccgtcg taagttttcg ataaatgaag tggtgtttca
     5101 tagtgagata aagtaatcag tggttcgata ttatgtgcta gaagttcatc gaataaatca
     5161 tcgtaaaatt gtaatcctgc ttcgtttggc tcagtttcgt caccatttgg gaagatacgg
     5221 gaccaagcga tggaagtacg gaaaaccttg aagcccattt cggcaaaaag tttcacgtca
     5281 tctttgtagc gatgatagaa gtcaattcct tctaatttta agttatctgg tgttggaccg
     5341 tcagtaatgt gaccaaatcc gccttttgga gtaacatctt gaacggaaag tccttttcca
     5401 tcgacgttgt aagcgccttc gaattggttt gcagcagcag ctccacccca taaaaagttg
     5461 gctggaaatc ctgtatttgt atgcatgtta aaaactcctt ttctacattt taaagtatct
     5521 atgaaaaaaa ccaaatactt ttctaaatac atgcaaaaaa acacggtact tagaaaaata
     5581 tttggttatg cccggctttc gtcggtaaca ttccgattta tagttaaaat atagcaaaaa
     5641 taaggaagat agtcaacgaa aacaaataac accgactcta ttttgagccg gtgttttgac
     5701 tattttttac gtctaaaaag ggcaagggaa gcgagcataa gtgtaccgaa taaaatgcta
     5761 gatgtggttt cagtgtcccc tgttttagga attggcaaag tagttgtttt tgttacgctg
     5821 gattttgctt gttttgttgc ttgttttgtt gctgtttttg ttgcttgact agtaatttga
     5881 atcgggttgt ttactatttt tgaatcggcg gatttttctg gttcattttc gctagaatca
     5941 gattctacta ccgttgattc tggattttct ggagtggtga tttctggttt ttcaggtgtt
     6001 gctggatctg ttggtgtaga tggttcgtca ggtgttgggg ttgctggatc tgttggtgta
     6061 gatggttcgt caggtgttgg agttgctgga tctactggtg tgactggctc ttctgggtta
     6121 tcagtttctg gatcgttttt tggtggtgtt acaggtttgg aacgttcgtc tagttctgtt
     6181 tgagctttta caatgttggc ctgaagcgta tcttttaact cggaagcagg aagaacatcg
     6241 acaagcgttt gagcttggtc aatcaagtct tgcgtagttt cagctttaat cgagtttgct
     6301 ggattatcct ctaggaaaag ttggttgaca gcttgtatgg ctgcctgttc ttgtgctatg
     6361 cgcgcatcca gttgttgttg agcattatta agttgttctt ggaaagtttc tttttctgaa
     6421 ctagttacag tattaatttg ttcctgcaca gcgttaatag cgttttgatc tgttgcagct
     6481 aaaatagttc ctgttggatc attatttaga aacagctcat taatggctgt ttggatatag
     6541 ttgtagttga tggttactgt tttgattaaa tcgctattag tttctgtcat tgaacgaacc
     6601 atggcccctt tctctaaaat tacattgcca ctagcttcgt agccaagagg atcataataa
     6661 gtgaaatcgg ataaatcaac agcgtaggta ccagctgcat tggtagtgcc aaagaatgtt
     6721 ccagtgagcc tgccttctgg ggtataaatt gctatggcaa aagatgataa tgctgtggtt
     6781 tttccagtga ttttcgtgtc accaacatgg ggcgcatcta aagggctaat ataaatagtt
     6841 gaggcattat gtgtttcttc atatgcggat gccatcgcag gtaaggcagt aatagaagta
     6901 gttaaaaggg agacagtaaa taatacagtt gctaagttct taaaatattt attcattaag
     6961 tggtctttcc tccaatagaa ataatcttgt gagcttagca tactattatc aggatgctaa
     7021 aaatagtagt gaaatgagtt gtatttccgg tttatgaagt gaaattatgt ctaattcgcc
     7081 acatttggct aataactaca ttgtatccct tagaataaag tcttttttta gtcaagcgct
     7141 ccgataaaag catttttgtt cttctgagaa aaagatatac cgacaattgt ttgttagccg
     7201 ggattagagg gaactaggta aaaggaacgg tctaatgaag atgatttttt cattagtaaa
     7261 gatatataca gaggaggagt cagcgtggga tcagcgtttt cagctatttt gtcaccggca
     7321 gtggggattt tgattagccc atttccaatt gtaggactta ttttgatttt acttagcaac
     7381 aaggctcgga ttaacagtat tttttatacg gtaggttgga ttgttgggaa tatagctatt
     7441 ttctttattg ggttattctt aatgagttca gcggttagtt cgtccggaga tcagtcaacc
     7501 ttggtcaaag tggtacttat tgtgctgggg gctttactta tacttctagg cgcacatgac
     7561 tttacaaaac gtcctaaaaa cggggagcag gctgcaacac caaaatggtt tgaaaaaatg
     7621 agcaatatta aaccgggagg cgcgatgatg tttgcgtttg tgctttcagc agtgaatcca
     7681 aaaaatatgt tgctttcact tacagcggga gtgagcgttg gggcgctgaa tttatctggt
     7741 gggcaagaaa caacggcaac gattattttt ggcattatcg cttgttgttc gatttatatt
     7801 cctaccattg cttttttatt agctgggagt aaacttaaca acgcattgga tagcacgcgt
     7861 aaatggctta tccaaaacaa ttcagtgatt atggcggttc ttttcttatt tattggtttg
     7921 agtgttatta gtaaggcgtt ttaaaaataa agctgttttt t
//
LOCUS       DASEAA010000125         7817 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.125, whole genome shotgun sequence.
ACCESSION   DASEAA010000125 DASEAA010000000
VERSION     DASEAA010000125.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7817)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7817)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7817
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.125"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            7..291
                     /locus_tag="U0342_002156"
     CDS             7..291
                     /locus_tag="U0342_002156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423499.1"
                     /translation="MNIRYLSKKRSEEKDLIFKTKNILPENLKSLNIEMQGDRNCCYG
                     LLEINGKQLGKGITAVKLDLKAGSLPIVQVKYHPFTISEEMRRLLWSGKY"
     gene            317..598
                     /locus_tag="U0342_002157"
     CDS             317..598
                     /locus_tag="U0342_002157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465850.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423500.1"
                     /translation="MNNIKQAIIKLETILENGNEKENRLFVKYNTIKNILDLLEKDQE
                     LKIIEMEVELNGVEDSIENAALLEKRLSEAKSLVEDLANTINSLEIKVK"
     gene            630..791
                     /locus_tag="U0342_002158"
     CDS             630..791
                     /locus_tag="U0342_002158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003735005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423501.1"
                     /translation="MKDFEMMEAIKQKRLECKLVILENFESSFKEALNKGDSAMVSAL
                     AESLETVIK"
     gene            complement(784..1026)
                     /locus_tag="U0342_002159"
     CDS             complement(784..1026)
                     /locus_tag="U0342_002159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990193.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423502.1"
                     /translation="MKNRMDIMFKGISDDQPIALMGVISITSFPDNKSFDLNDFYLEA
                     DKTYKIIYKGANELENDLSKVFLMNSNDVLYIEFTI"
     gene            1090..1869
                     /locus_tag="U0342_002160"
     CDS             1090..1869
                     /locus_tag="U0342_002160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage antirepressor KilAC domain-containing
                     protein"
                     /protein_id="HEM2423503.1"
                     /translation="MSNLQVIANDMLPVLENEKGEKFVNARELHQSLQVGKKFTTWIT
                     DKLSNYGFSKDEDYFPILGESTFGRPRTEYLLTLDTAKELAMVQNNEMGRAIRKYFIE
                     VEKQARKLATEYPTFSYMIDDPVARAKKWIEEQQEKQEALKQIDEQKPKVIFADAVQT
                     SENTVLVKDLATILKQNGLDIGQNRLFEWLRGSGYLLNKGAYYNKPSQKAMNLGLFEQ
                     KTHIHTDRNGLMITTYTPRVTGKGQIYLLNKLLEEHNQVII"
     gene            1991..2515
                     /locus_tag="U0342_002161"
     CDS             1991..2515
                     /locus_tag="U0342_002161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987420.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423504.1"
                     /translation="MFQKSTSAPTAMQVLAETRTQKELAIDSYVTPALISNQLKGKRT
                     VSLEQAEQLIDSYNEPESTYLFAHEFSNGMIPPLLDGLDSHHAALTCRFELEVTEAVN
                     ALKSGLETMTFNLRKGDMLQREAAKQAISEITDVIATALTLNTSIAKAFNINLQQILE
                     SRDKFYQKNGLVKE"
     gene            2522..2707
                     /locus_tag="U0342_002162"
     CDS             2522..2707
                     /locus_tag="U0342_002162"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2423505.1"
                     /translation="METMEKDILTAEEAAEMLGMKKRTIQSWARNAGLPGKKINGKTW
                     IFSKRELEAWVAQGGEK"
     gene            2723..2911
                     /locus_tag="U0342_002163"
     CDS             2723..2911
                     /locus_tag="U0342_002163"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465845.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423506.1"
                     /translation="MTERVFRKTTNFGDSEIHTNSRTKMIANPAFQQKIPLNETGCDN
                     MTDYIEELKLKGYEEVTR"
     gene            3144..4103
                     /locus_tag="U0342_002164"
     CDS             3144..4103
                     /locus_tag="U0342_002164"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987423.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqaJ viral recombinase family protein"
                     /protein_id="HEM2423507.1"
                     /translation="MAIAKEKTMNILASVKDMDRTQWLLTRRLGIGGSDAGIIMGLNQ
                     YKTAFELWLDKTDQVPPGEMAGEAAYWGTQMEEVVAKEFEKRTGKKVRRSNMMYQHPE
                     HDFMLANVDRFVVGEDAILECKTASAYLAKEWEADEVPATYLVQIQHYLAVTGKSKAY
                     VAVLIGGNKFIWKEVERDDELINQIIAFELDFWETNVKGHVAPALDGSSAAEKYLKDR
                     FAKSEAKQVNLSKEYNEFLAERANLGRDITLLETRKKEIDNNIKNELKEAETGITDDF
                     TITWKPVTTSRVDTKRLKEEHLDIYKKLQKESSYRKFAVKENE"
     gene            4103..4918
                     /locus_tag="U0342_002165"
     CDS             4103..4918
                     /locus_tag="U0342_002165"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990196.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase RecT"
                     /protein_id="HEM2423508.1"
                     /translation="MATNDELKNQLANKQNGGQVASAQSLDLKGLLEAPTMRKKFEKV
                     LDKKAPQFLTSLLNLYNGDDYLQKTDPMTVVTSAMVAATLDLPIDKNLGYAWIVPYKG
                     RAQFQLGYKGYIQLALRTGQYKSINVIEVREGELLKWNRLTEEIELDLDNNTSEKVVG
                     YCGYFQLINGFEKTVYWTRKEIEAHKQKFSKSDFGWKKDYDAMAKKTVLRNMLSKWGI
                     LSIDMQTAVTEDEAEPRERKDVTDDESIPDIIDAPITPSDTLEAGSVVQGSMI"
     gene            4948..5874
                     /locus_tag="U0342_002166"
     CDS             4948..5874
                     /locus_tag="U0342_002166"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423509.1"
                     /translation="MDGYIALHRKIIDSWIWQDPEFYRLWSYCLIKASFKEREIFLGQ
                     QIVKLNPGQFVIGREKLEEAMNIGLKNKRTALTWWRRLQKLEKAQMLNIKSYNKFSIV
                     TIENWGLYQGSDIENEQQNEQQTNNKRTTDEQQTNTNNKDNKDNKEKNDNKDNNKRQN
                     KFDEVHLSLANLLFEMIKSNNPEEKVPDVEKWAHDIRIMIEQDKRDAEKVKNAIIWSQ
                     KNDFWCGVIKSPKSLRKNYDQMATQRNKPVANKPFNKYSKQTKPEILPDWFNKEQKQT
                     KQETSTTESSEDLEKKVAEIKAKLAARSEVQA"
     gene            5871..6038
                     /locus_tag="U0342_002167"
     CDS             5871..6038
                     /locus_tag="U0342_002167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601514.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423510.1"
                     /translation="MTEYALYKADELLIIGTVDKLAEFQKVKRETILFYATPTYQKRT
                     TDKGLRVIRVV"
     gene            6054..6335
                     /locus_tag="U0342_002168"
     CDS             6054..6335
                     /locus_tag="U0342_002168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423511.1"
                     /translation="MGKYYWHVSRFGGKPTEIRHYNHITKMYKFILRNPAMFKDKTLT
                     IYDDAKAVTNMTFNEIKYRASLNLCETVERKYVLSLTQRLKEEQKEAKK"
     gene            6332..7144
                     /locus_tag="U0342_002169"
     CDS             6332..7144
                     /locus_tag="U0342_002169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM2423512.1"
                     /translation="MKRILNYPGSKWGLADLIIENMPEHKSYLEPFCGSCAVFMNKQK
                     ATLETINDLDGRLVNLFKTMRDNPEELQYLIMHTLYSREEYMLSHEISSDSLEDARRM
                     AVRLWFAVGGKTNANVGFRKNVSWNGPYNAYEWNDMYNRIGIAAARLKDAQIENVDAI
                     KLIEQHNDKDTLIYCDPPYVATSLASSHYQHDFSLEQHKELLKVLKKHEGKVMLSGYE
                     SELYKQELSDWPALKTMTKVGITSEKKSDRQEIIWCNFEPPMQLNLFKEEQA"
     gene            7141..7773
                     /locus_tag="U0342_002170"
     CDS             7141..7773
                     /locus_tag="U0342_002170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM2423513.1"
                     /translation="MRFKEGDKVEFIWIGELKQGVVTEIEETKNAISYQIKYSGEMGM
                     TWLDERDLLSPAPVLKVPKLVGDFLENHSKEDGHTLHDLLCDLLTSRDSLDENVYDWI
                     MENNNENGELLARAWLDGYEVEKELLYYVKLPISKRNEATDELEVINMCLLLNIQSHE
                     TCISGNYRWVDKLKRTGWRTKLTEAQIKDMPEGDAYWQFAVPVRDLECEA"
BASE COUNT         3034 a         1163 c         1667 g         1953 t
ORIGIN      
        1 tagaaaatga acataagata tttgagtaag aaaagaagtg aagaaaaaga tttgattttt
       61 aaaaccaaaa acatactacc agaaaacttg aaatcgttaa atattgagat gcaaggagat
      121 agaaattgtt gttatggact attagaaatt aatggaaagc aattaggaaa aggaattaca
      181 gcagtgaagt tagatttaaa agcaggatcg ttgccaattg tgcaagtcaa atatcatcca
      241 ttcacaatca gcgaagaaat gcgaagactg ttatggtctg gaaaatacta aaaaccataa
      301 tttaggagga agaaaaatga ataacatcaa acaagcaatt attaaattag aaacaatttt
      361 agaaaatggt aatgaaaaag agaatagatt attcgttaag tacaacacta taaaaaacat
      421 tttagattta cttgaaaaag atcaagagct aaaaattatc gaaatggaag tagagctgaa
      481 tggagtagag gattccatag aaaacgccgc tttgttagaa aagagattaa gtgaagctaa
      541 atctttggtg gaagacttgg ctaacactat aaactcgtta gaaattaagg tgaagtgaag
      601 cttttccaaa aagaatagga ggttaaaaaa tgaaggactt tgaaatgatg gaagcaatta
      661 aacaaaaacg gcttgaatgt aaattagtaa ttttggaaaa ttttgaatcg agttttaaag
      721 aagccctcaa taagggagat tccgccatgg tgtcggcttt agcggaatca ttggaaacag
      781 ttattaaata gtgaactcaa tgtaaaggac atcatttgag ttcattagaa aaactttcga
      841 taaatcgttt tctaactcgt ttgcaccctt ataaatgatt ttgtaagttt tatcggcttc
      901 taaataaaaa tcatttaaat caaaactttt gttatctgga aaagatgtaa tgcttataac
      961 gcccattaga gcaatgggct ggtcatcaga gatacctttg aacattatat ccatgcgatt
     1021 tttcacaaat tccacctccc ttcacaaaaa ctatagcact gtgaaagggc gaacagaaag
     1081 gagaacaaaa tgtcaaattt acaagtaatt gcaaatgata tgttgccagt tttagaaaat
     1141 gaaaaaggcg agaaatttgt aaatgcacgg gaactacatc aaagcttgca agttggaaaa
     1201 aaattcacta cttggattac tgacaagctt agtaattatg gattttcaaa ggatgaagac
     1261 tatttcccaa ttttgggaga aagtacattc ggtagaccca gaacagaata cttattaact
     1321 ttagacactg ctaaagaatt agcaatggta caaaacaatg aaatgggtcg agcaattaga
     1381 aaatacttta ttgaagtaga aaaacaagcg aggaaattag caactgaata tccaacattt
     1441 tcatacatga tagacgaccc agtcgctagg gctaaaaaat ggattgagga gcaacaagag
     1501 aagcaagaag cattaaagca aattgatgaa caaaaaccga aagtgatttt tgcagatgct
     1561 gtacaaacga gcgagaatac agttttagta aaagacttag cgacaatcct taaacaaaat
     1621 ggcttagata ttgggcaaaa caggcttttt gaatggctaa gaggaagcgg atatttgcta
     1681 aataaagggg cttattataa taaaccatcg caaaaggcga tgaatttagg attgtttgaa
     1741 caaaaaacac atattcatac agatagaaac ggcttaatga taactaccta tacacctcga
     1801 gttactggca aaggtcaaat atacctatta aacaaattat tagaagaaca caatcaagtc
     1861 ataatttaag cgtcgcctac cacaacgacg cttatgcaga caacttagtc acggggagcg
     1921 actaacaata gtatataacg ataagttgtt aattagtggt taaaaaataa acaaaaagga
     1981 ttgagatatt atgtttcaaa aatcaacatc agcgccaacc gcgatgcaag ttttagcaga
     2041 aactcgcacg caaaaagagc tagcgattga tagttatgta acaccagcac taataagcaa
     2101 ccagttaaaa ggaaagcgaa cagtttcact tgaacaagca gaacagttaa ttgatagcta
     2161 caacgaacca gaaagcacat atttattcgc acatgaattt tcaaacggaa tgataccgcc
     2221 tctactggac gggctagaca gtcaccatgc ggctttaact tgtcgctttg aactagaagt
     2281 aacagaagca gtaaatgcgt taaaaagcgg attagaaacg atgacattca atttaagaaa
     2341 aggcgacatg ctacaacgag aagccgcaaa acaagcaatt tcagaaataa cagatgtaat
     2401 cgcaacagca ttaacgctta acacaagtat agcgaaggca ttcaacatta atttacaaca
     2461 aattttagaa agtcgagata aattctatca aaaaaatggt ttggtgaagg agtgagaaac
     2521 aatggaaaca atggaaaagg atattttgac agctgaggaa gcggcggaaa tgttaggaat
     2581 gaaaaagagg actattcaat cttgggctag aaatgcggga ttacccggca aaaaaataaa
     2641 cggcaagaca tggattttta gcaaaagaga acttgaagcg tgggtagcgc aaggtggaga
     2701 aaaataaagg agggctacaa caatgacaga aagagttttc agaaagacta caaacttcgg
     2761 tgatagcgaa attcatacaa atagcagaac aaaaatgatt gctaatccgg catttcagca
     2821 gaaaatcccg ttaaacgaaa caggttgcga caacatgacg gactatatcg aagagttgaa
     2881 gttaaaaggc tatgaggagg tcacgcgctg atggatgtat ttatggtaat gattttcgtg
     2941 tcgtttatgt ctgtaatcgc aggtttttgg ctgagaggaa gtgataaacg tggttgagaa
     3001 tccgatggtt gttgatgatc tttgggacga tggttttaga cattaaaaaa gcacgcatag
     3061 cagtgcgcgc tttaaggatt tgagatatta ccttaagaaa attatacctc aaattcacat
     3121 attaatcaat ggaggtagca tatatggcta ttgcaaaaga aaagacaatg aacattttag
     3181 caagcgtgaa agacatggat agaacacaat ggttgctgac tcggcgctta ggtatcggcg
     3241 gaagcgatgc gggaatcatc atgggtttaa atcaatacaa aacagctttc gagttgtggt
     3301 tagacaagac cgaccaggtt ccgcccggtg aaatggcagg agaagcagca tactggggaa
     3361 ctcaaatgga agaagttgtc gcaaaagaat tcgaaaagcg aactggcaag aaagtaagac
     3421 gtagcaacat gatgtatcaa catccagagc atgattttat gttggcgaac gttgataggt
     3481 ttgtggttgg tgaagacgct attttggaat gtaaaacagc atcggcatac ctagcaaaag
     3541 aatgggaagc tgacgaagta ccagcgactt acctagtgca aatacaacac tatttagcgg
     3601 tcacaggcaa aagtaaagcg tatgtagcag ttctaatcgg aggaaataaa ttcatttgga
     3661 aagaagtaga acgcgatgac gagttaatca atcaaataat cgcttttgag ttagattttt
     3721 gggaaacgaa cgtaaaagga catgtggcac ctgcgttgga tggttcaagc gccgcagaaa
     3781 aatatttaaa agatcgtttt gctaagtcag aagctaaaca agttaattta tcaaaagaat
     3841 acaatgaatt tttggctgaa agagcaaatt taggacgcga tataacgctc ttagaaacac
     3901 gaaaaaaaga aattgataat aatatcaaga atgagttaaa agaagctgaa acgggcatca
     3961 cagatgattt tacgattact tggaagcctg ttacaacttc aagagtagat acaaaacgtt
     4021 taaaagaaga acatctagat atttataaaa aattacagaa agaaagtagc tatagaaaat
     4081 ttgcagtgaa ggagaatgaa taatggcaac taacgatgaa ttaaaaaatc aattagcaaa
     4141 taaacaaaat ggagggcaag tagcaagcgc acagtcatta gacttaaaag gtttgctaga
     4201 agcaccgaca atgcgcaaga aattcgaaaa ggtactagat aaaaaagcgc ctcaattttt
     4261 aacttccctt ttaaatcttt ataatggcga cgactattta caaaaaactg acccgatgac
     4321 agttgttact tccgccatgg ttgctgcaac actagattta ccaatcgaca aaaatttagg
     4381 ttatgcgtgg attgttcctt ataaaggcag agcacagttt caacttggtt ataaaggata
     4441 catccagtta gcactacgca caggacaata taaaagcatt aatgttatcg aagtgcgcga
     4501 aggtgagcta ctgaaatgga accgacttac cgaagaaatc gaactagatt tagacaacaa
     4561 tacaagtgaa aaagtcgttg gttactgtgg ctatttccag ttaattaatg gctttgaaaa
     4621 aacggtctat tggactcgta aagaaataga agcgcataaa cagaaattta gtaaatcgga
     4681 ttttggatgg aaaaaagatt acgatgcaat ggctaaaaag actgttctta gaaacatgtt
     4741 aagcaagtgg gggattttat ccatcgacat gcaaacagcg gttacagagg acgaagcaga
     4801 gcctagagaa cgaaaagacg ttacagacga tgagtcgata cccgatatta tagatgcgcc
     4861 tataacgccg tctgacacgt tagaagctgg ctcggtagtt caagggtcaa tgatctaagt
     4921 gaaaattgat aaggcagggg aattgcgatg gatggttata tagctttaca cagaaaaatt
     4981 attgatagct ggatatggca agaccctgag ttttatcggc tttggtcata ctgccttatc
     5041 aaagcgtcat ttaaagaaag agaaatattt ttaggtcaac aaatagtcaa attaaatccg
     5101 ggtcaatttg taatcggaag agaaaaatta gaagaggcaa tgaacatagg actcaaaaat
     5161 aaacgaacag cacttacgtg gtggcgacga ttacagaagc tagaaaaagc ccaaatgttg
     5221 aacatcaaat cgtacaacaa attttctatt gtaactattg aaaactgggg gttatatcaa
     5281 ggtagcgata tagaaaacga acagcaaaat gaacaacaga cgaacaacaa acgaacaaca
     5341 gacgaacaac agacgaacac aaacaataaa gataataaag ataataaaga gaagaatgat
     5401 aataaagata ataataaacg tcaaaacaag tttgacgagg ttcatttatc tttagctaat
     5461 ttattatttg aaatgattaa gtcaaataac ccagaagaaa aagttccaga tgttgaaaaa
     5521 tgggctcatg acatcagaat tatgattgaa caagataagc gagatgctga aaaagttaaa
     5581 aacgctatta tatggtcaca gaaaaatgat ttctggtgcg gtgtcataaa atctccgaaa
     5641 tctttaagga aaaattatga tcagatggcg acgcaacgta ataagccagt tgctaacaag
     5701 ccgttcaaca aatacagcaa acaaacgaaa ccagaaatat tgccagattg gttcaacaaa
     5761 gagcagaaac aaacaaaaca agaaacttca acaacagaat caagcgaaga cttagaaaag
     5821 aaagtcgctg aaattaaagc gaaattagcg gctagaagcg aggtgcaggc gtgacagaat
     5881 acgcacttta taaagcagac gaactactaa taatcggcac agtagacaaa ctagcggagt
     5941 ttcagaaagt gaagcgtgag acgattttgt tttatgctac gcctacgtat caaaagagga
     6001 cgactgataa ggggttaaga gtaattagag tggtttagaa aggatgaaat ttcttgggaa
     6061 aatattactg gcacgtgtca agatttggtg gaaagccgac agaaattcga cactataacc
     6121 acattacaaa aatgtataaa tttattttgc gaaatccggc aatgttcaaa gataaaactt
     6181 taacgattta tgatgacgca aaagcagtta caaacatgac gtttaacgaa attaagtata
     6241 gagctagttt gaatttatgt gaaacggtag aaagaaagta tgtgttgtca cttactcaaa
     6301 ggcttaagga ggaacagaag gaggctaaaa agtgaaacga atacttaatt atcccggcag
     6361 taaatggggt ttggcagatt taataattga aaatatgccg gagcataaaa gttatttaga
     6421 accattctgc ggatcatgtg cggtctttat gaacaagcaa aaagctactt tagagacgat
     6481 aaacgattta gacggtcgac tagttaatct ttttaaaaca atgcgtgata atccagaaga
     6541 actgcagtat ttaatcatgc acacgctgta ttctcgtgaa gagtatatgc tttcgcatga
     6601 aatatcaagt gattcattag aagacgctag acgcatggct gtgaggctct ggtttgccgt
     6661 cggaggcaag actaatgcaa atgttggatt tagaaaaaac gtgtcttgga atggtcctta
     6721 caatgcatat gagtggaatg acatgtataa ccgaatcgga atagctgcag caagactgaa
     6781 agacgctcaa atcgaaaatg tagatgcaat taaactgatt gaacagcata acgataaaga
     6841 tacactgata tattgtgacc cgccatatgt tgcaacttct ttagcaagtt cacattatca
     6901 gcatgacttt agtttagagc aacacaaaga gttactaaaa gtgcttaaaa agcatgaggg
     6961 caaagtaatg ttaagcggct atgaatcaga actatataaa caagagttat cagactggcc
     7021 agctcttaaa acaatgacaa aagtaggcat tacatcagaa aagaaatcag ataggcaaga
     7081 aattatttgg tgcaattttg agccgcctat gcaattaaat ctttttaagg aggaacaagc
     7141 atgagattta aagaaggcga taaagtagag tttatttgga taggtgaatt gaaacaaggt
     7201 gttgtaactg aaatagaaga aactaaaaat gctatatcct atcaaattaa atatagtgga
     7261 gaaatgggca tgacttggct tgatgaaagg gacttacttt ctccggctcc agttttaaaa
     7321 gttccgaaat tagtaggtga ttttttggaa aatcattcta aagaagatgg tcatacactt
     7381 catgatttat tgtgcgattt attaacttct agagattcgt tagatgaaaa tgtctacgac
     7441 tggatcatgg aaaacaataa tgaaaatggt gaattgcttg cacgcgcttg gcttgacggc
     7501 tacgaagtcg agaaagaact gctttattat gtgaagttac cgatttcaaa gcggaatgaa
     7561 gctacagacg aattagaagt aattaacatg tgtcttttgt taaatataca atcacacgaa
     7621 acatgtattt ctggaaatta cagatgggtt gataagctaa aaagaacggg ttggagaacc
     7681 aaattgacag aagctcaaat aaaagatatg cccgaaggtg acgcttattg gcagtttgct
     7741 gttcctgtta gggatttgga gtgtgaagca tgagagagat tgagtttaga ggtaaacgaa
     7801 tagataacgg agaatgg
//
LOCUS       DASEAA010000126         7465 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.126, whole genome shotgun sequence.
ACCESSION   DASEAA010000126 DASEAA010000000
VERSION     DASEAA010000126.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7465)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7465)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7465
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.126"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            159..509
                     /locus_tag="U0342_002171"
     CDS             159..509
                     /locus_tag="U0342_002171"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731234.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423514.1"
                     /translation="MKKKKWLQLIMAVIVLCAIIFGIKWLLYRDNLVEMMQVDDTLYI
                     VSYEPAKQEDALEKIGEIEHRIRHYRIPNKNFTSNYLSEGTELYKAKNGDEFPRTILF
                     KEDGEYFIASEAMK"
     gene            complement(711..1178)
                     /locus_tag="U0342_002172"
     CDS             complement(711..1178)
                     /locus_tag="U0342_002172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YobD family protein"
                     /protein_id="HEM2423515.1"
                     /translation="MVWDATNIFLFAANILTVLYILYNDAVIPLWKGKTVLSVKLRSR
                     GRWDGYIFVGIIVLLFVSNTFFREGPFSTSVLLGIMGVLFIYICFFRSSKAVFKESGL
                     FYALLFFPYAKIERMNLSEDGVLVIETNRQRLMLFARSEKDLEKMLAVFTTYS"
     gene            complement(1360..2238)
                     /locus_tag="U0342_002173"
     CDS             complement(1360..2238)
                     /locus_tag="U0342_002173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HEM2423516.1"
                     /translation="MSEQITVNEKKITKSDLMGVFIRSNLFQGSWNFERMQSLGFCFS
                     VIPVIKRLYPEKGPEREQAIKRHLEFFNTHPYMAAPILGVTTAMEEQKANGADIDDGA
                     INGIKVGLMGPLAGVGDPIFWGTVRPVLAALGAGFATDGSIIGPILFFVLFNAIRLGF
                     RYWGVFYGYTKGTDVVSDMSGGLLQKLTEGASILGLFVMGALVNKWTTIYVPLVAYTT
                     EDSKTGKDVPTTVQSILDQLMPGLLALLLTFACMWILKKKVNALWLILGLFVVGILGY
                     WSGILGLPPAGYSPLG"
     gene            complement(2256..3071)
                     /locus_tag="U0342_002174"
     CDS             complement(2256..3071)
                     /locus_tag="U0342_002174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose/fructose/sorbose transporter subunit
                     IIC"
                     /protein_id="HEM2423517.1"
                     /translation="MSAIQLILVFLVSCISGMGSILDEWQTHRPLIACTLIGLVLGDI
                     TTGIIIGGTLEMIALGWMNIGAAVAPDAALASIISTILVITGGQDISVGISLAIPLAA
                     LGQVLTILVRTITVAFQHMADKAGKEGNLRSLDWIHVTALLLQAMRIAIPAVIVAVTV
                     GTQAVENLLNAIPDVIVNGLNVAGGFIVVVGYAMVINMMSAKYLMPFFFLGFVVAAFT
                     AFNLVALGVLGLVAAIIYIQLNPKYQLKEAIQQYGGGGGGRSADDDLDDDLDD"
     gene            complement(3246..3734)
                     /gene="manX"
                     /locus_tag="U0342_002175"
     CDS             complement(3246..3734)
                     /gene="manX"
                     /locus_tag="U0342_002175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003229832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IIAB"
                     /protein_id="HEM2423518.1"
                     /translation="MMEIRLARIDDRLIHGQVATVWTKETQVERIIVISDDVAKDEVR
                     KTLLTQVAPPGVKASVVDVQKGIRVYNNPKYATTPVMLLFTNPTDVLTLVEAGVNITT
                     VNIGGMAFREGKHMITNAVSVDETDEAAFRKLDEKGIELEIRKVASDNKVKLIPLLDK
                     DK"
     gene            complement(3731..4165)
                     /locus_tag="U0342_002176"
     CDS             complement(3731..4165)
                     /locus_tag="U0342_002176"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS mannose transporter subunit IID"
                     /protein_id="HEM2423519.1"
                     /translation="MPVGIIIGTHGEAARELLKSTEMIIGKQDNVEFITFVPGENTDT
                     LITKYKEKLDKLDTSEGVIFMVDLFGGSPYNASSQIALPEDNMDVVTGVNIPMLLETL
                     SMRAASNQKDLVETALTAGSGGVKSLKQSLPKIETEVGEDDL"
     gene            complement(4453..7269)
                     /locus_tag="U0342_002177"
     CDS             complement(4453..7269)
                     /locus_tag="U0342_002177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sigma-54-dependent transcriptional regulator"
                     /protein_id="HEM2423520.1"
                     /translation="MKRIDRIYEFILENPSTKTIREQLEKNEGFTASTISETLSILRN
                     NVSMELNELHRQGKIIKIVGRPVLYFPKKAVEDEIGRTLSDNELEFDSCEPLLKMLKP
                     SIVERSPFDDLIGVNDSLKTPVEQAKAAVLYPPNGLHTMILGQTGVGKTLFANLMYRF
                     SQHAKRLPADAPFIIFNCADYYNNPQLLMSHIFGHVKGAFTGADNDKGGLVEKAEGGI
                     LFLDEIHRLPPEGQEMIFYLMDSGTYNKLGETDRTRKSNVLIIGATTENPESSLLKTF
                     MRRIPIIITLPSLEERTAFERVELLKYLLSSEAHRVNKPIRIEDEAAKALIGNTTYGN
                     IGQLKSNIQLVCAQGFLNSFDKDEEILIDFKTLPINIKDGFFHFSNRRKELQAIAEYL
                     EPYTTIFPELNNTLITSDEYEPNFNLYKIIEDKASILMDQGVEDDDIKKFIKMDIDIH
                     LNSFYNKFKNTIHNRENILKIVNEEILNFAEGVELRIEHQLGKKLNERFLLAFSLHLT
                     SFIKRIESNKPLKYTNIENVVNDQPEAYELSREIKDDIEATFHIRVPNMEVMYLTLLI
                     SSLLKEQENARVAVLVATHGNNTASSMVSVAKKLLGEGLVEGIDMPLDQSPKIVLDKL
                     TERAKEMDMGRGLLLLVDMGSLTSFAPVISERTGIPVRSIDMVSTATVIEAVRKSNIL
                     DMELDSIYDSLKDFRGYGGYNSDDDTLDSNQKPHAIITICATGEGTAEKLQLFIENIL
                     DTITTDAIKVIPIGLHEMDTKLEQLQEENDILMAVGIQDPKIQIPFIPLERLFGIDGE
                     EQLVSLVKQRNIIVKKGETGRIAKEIIEESLNEFLTYLNPKKTIEILSSFASVLEKKL
                     GYKLDNTFKINLLIHVGCALERMVLNDGLIYREPKDMLETNIFKALEQTNKEVIYKMN
                     LKLTNDELCYLYDILNEIQPEVLS"
BASE COUNT         2326 a         1466 c         1381 g         2292 t
ORIGIN      
        1 ttttaaggta ttcatgacaa gaatcagaca tttcattaca tttttggtta tacattggct
       61 ttttatgata cactcatcgt gcaacaaaat ataccaacat tgtgacggaa tggtttatta
      121 aaagcggtaa taaataaaat gaaaagtgag ataatagaat gaagaagaaa aaatggttgc
      181 aattaataat ggcagtaata gttctttgtg caataatatt cgggataaaa tggttattat
      241 atagagacaa tcttgtagaa atgatgcaag ttgacgacac tttatatata gtgtcgtatg
      301 aaccagcaaa gcaagaagat gctttagaga aaattggtga gatagagcat agaattcgcc
      361 attaccggat accgaataaa aatttcacat ctaattattt aagcgaaggg acagaacttt
      421 ataaagcgaa aaatggagat gagtttccaa ggactatttt gtttaaagaa gacggcgaat
      481 attttattgc atcagaggct atgaagtagc ctaataaaaa gcgttagttt attttttctc
      541 ttaatagaga aagtttatcg tctacaacta aatggaacat atgtaaaagt atactgattg
      601 gcatactttt catttttaag aaaaatcatt gattctaaat ttaagtagag tgaacataaa
      661 aaacgccatg cttcatttcc ctaaaaacag ggaagtaagc gtggcgtttt ttagctatat
      721 gtagtaaata cagcgagcat tttttctaaa tctttctcgg atcttgcaaa gagcatcaaa
      781 cgctggcgat tggtttcaat cacgagcaca ccatcctctg acaaattcat ccgttcgatt
      841 tttgcataag ggaagaataa cagggcgtaa aaaagtccgg attctttgaa aacagctttc
      901 gaactgcgaa agaagcagat atagatgaat aacacaccca taatcccaag cagaacagaa
      961 gtggaaaatg gtccttcacg aaagaacgta ttggaaacga ataacagaac gataattcca
     1021 acaaaaatat aaccgtccca gcgtccacga gaacgcaatt tgacacttaa aaccgtcttc
     1081 cctttccaaa gtggaattac tgcatcatta tacaaaatat acagtaccgt caagatgttt
     1141 gccgcaaaca aaaagatatt agtagcatcc caaaccattt tagctatcac tcacaatcta
     1201 tcattgatat agtttagtaa tattgtaaca taattatgcg gggaagaggg ggaactgggt
     1261 ttgaggataa tcatttagag aggctctttc ggcacgataa gacacaaaaa agaaccggaa
     1321 ttttaatccc ggttcttttc gaattattat aaccacccat tacccaagtg gtgaataacc
     1381 agctggtgga agtcctaaga taccagacca gtaacctaga ataccaacaa cgaatagtcc
     1441 taaaatcaac cataaagcat tgactttctt cttgagtatc cacatacaag cgaatgtgag
     1501 tagaagggca agaagacctg gcattaattg gtccaagata ctttgaacag tagttggaac
     1561 gtctttacca gttttagagt cttctgttgt ataagctact agtggaacat agattgtggt
     1621 ccatttatta acaagggcac ccatgacgaa tagtccaaga atggaagctc cttctgttag
     1681 tttttgaagc aaaccgccag acatatcaga tacaacatct gtaccttttg tatatccgta
     1741 gaacacgccc caataacgga aacctaaacg aattgcatta aatagtacga agaataaaat
     1801 tggtccgatg atactaccgt cagttgcaaa ccctgcacct aaagcggcaa gtactggacg
     1861 aactgttccc cagaaaattg gatccccaac gccggcaagt ggtcccatta gacctacttt
     1921 aataccattg attgcaccgt cgtcgatatc agcaccattg gctttttgtt cttccatcgc
     1981 ggttgttaca cctaagatag gagcggccat atatggatgc gtattaaaga actcaaggtg
     2041 acgtttgata gcttgttctc tttcaggtcc tttttcagga taaagacgtt taattactgg
     2101 aattactgag aaacagaatc ctagagattg catacgttca aagttccacg acccttggaa
     2161 gaggttggaa cgtatgaaca cgcccattaa gtcacttttc gttattttct tttcattaac
     2221 tgtaatttgt tcactcatat ttttctcccc cttccttagt cgtcaaggtc gtcgtcgaga
     2281 tcatcatccg ctgatcgtcc gccgccgccc ccgccgtatt gttggatagc ttctttcaat
     2341 tgatatttag ggtttagttg gatataaatg attgctgcaa ctagtcctaa aacacctagt
     2401 gctactaagt taaacgcagt aaatgctgcg acaacaaaac ctaagaagaa gaaaggcatt
     2461 aaatatttag cggacatcat gttaataacc atggcgtaac caacaacaac gataaatcca
     2521 ccagctacgt ttagaccatt aacaataacg tccggaatgg cattgagtaa attttcgact
     2581 gcttgtgtac caactgttac cgcaacgata acggctggaa ttgcaatacg catagcttga
     2641 agtagtagtg ctgtaacatg tatccagtcg agacttcgca gattaccttc cttaccagct
     2701 ttatcagcca tgtgttggaa tgcaactgta attgtacgaa ctagaattgt aagtacttga
     2761 ccaagagcag ctagaggaat cgcaagcgaa atacctacgc tgatatcttg tcccccagta
     2821 ataactaaga tagtagaaat aatggatgca agggcagcat ctggagcaac cgcagctccg
     2881 atattcatcc atccaagcgc gatcatttca agtgttcccc caataataat accagttgta
     2941 atatccccaa gaacaagacc aattaacgta caggcaatta atggacggtg cgtttgccac
     3001 tcatccaaaa tactacccat accactaata caggatacga ggaatactag gattaattgt
     3061 attgctgaca tatatttccc tcccaatttt tctttagaat gataaaaaaa gataatttca
     3121 ttatgatgac tgaataaatt aagcatctat tacataagct tttattcatg aatcacccct
     3181 ttaaaggtct tcctttaaac gtttgcattt tcggggctct aaaaaacaag cgagccgcgg
     3241 atgaattatt tatctttatc tagtaatggg ataagtttga ctttattgtc agaagcgact
     3301 ttacgaattt caagttcaat tcctttttca tctaatttgc ggaatgctgc ttcatccgtt
     3361 tcgtccacag acacagcatt tgtaatcatg tgtttacctt cgcggaatgc cataccacca
     3421 atgtttacag ttgtaatgtt tacacctgct tctacgagtg ttagcacatc ggtagggtta
     3481 gtgaataata gcatgactgg agttgtagca tatttagggt tgttgtatac gcggatacct
     3541 ttttgtacat ccacgacgct tgctttaact cctggaggtg ctacttgtgt aagaagtgtt
     3601 ttacgcactt catcttttgc tacatcgtca ctaataacga tgatacgttc tacctgcgtt
     3661 tcttttgtcc aaacggttgc tacttgacca tgaattaagc gatcatcaat acgtgctaag
     3721 cgaatttcca ttataaatcg tcctccccga cttcggtttc tatttttggt aatgattgtt
     3781 tgagtgactt aacgccacct gatcctgctg taagagctgt ttcaactaga tctttttgat
     3841 tacttgcagc ccgcattgag agcgtttcaa gtaacatggg aatattgacc cccgtgacaa
     3901 catccatatt gtcttctgga agggcgattt ggctagatgc gttataagga ctgccgccaa
     3961 ataaatcaac cataaaaata acgccttcag aagtatccaa tttgtctagt ttttctttgt
     4021 atttggtaat aagcgtatca gtgttttctc caggaacaaa agtaataaat tctacattgt
     4081 cctgtttgcc gataatcatt tcagttgatt tcaacaattc acgcgcagct tcaccatgtg
     4141 tgccaatgat aattccaact ggcataggta tctcctcctt aagcgtggat ataatcatcc
     4201 attaatacta acgcaaaaac tgtgccaaca tttctgtatt aaacaacctc ctttgctaat
     4261 agaagcggtt caaggctttt gtaagcgtgt actaacagaa gcggcgcgcc ttaatacgct
     4321 agatacgtag cttaatacac taagtactaa tcttagacat acatacatca ttaccctaaa
     4381 agattagcca gaaaacgcaa ttgctgaaaa taaaacaagc caacttatga aaaaatgttg
     4441 gcttgtttgt aattatgaaa gtacttctgg ttggatttcg ttcaaaatat catacaaata
     4501 acatagttcg tcattcgtca gttttaagtt cattttgtag ataacttctt tatttgtttg
     4561 ttccagcgct ttaaagatat ttgtttcaag catatctttt ggttcacggt aaattaaacc
     4621 atcatttaga accatacgct ctaaggcgca accgacatgg atgagtagat tgattttaaa
     4681 ggtattatca agtttgtatc ctagcttttt ctccagtaca ctagcaaacg agcttagaat
     4741 ttcaatcgtt ttcttcggat tgaggtaggt tagaaattcg ttaagacttt cttcgataat
     4801 ttcttttgcg atgcgaccag tttcgccttt ttttacgata atattacgtt gcttcacgag
     4861 gctaacaagt tgctcctcgc catcaattcc gaaaagtcgt tcgagcggga tgaaggggat
     4921 ttggattttc ggatcttgaa taccgactgc catcaaaata tcattttctt cttgtaactg
     4981 ctccaatttc gtatccattt catgcaaacc aatcggaatc actttaatgg catctgtcgt
     5041 aatggtatct aaaatatttt cgataaacag ttgtaatttt tctgcagtac cttcgccagt
     5101 cgcgcaaatg gtaatgatgg cgtgtggttt ttgattggaa tcaagtgtat cgtcatcaga
     5161 attatagcca ccataacctc ggaaatcttt cagggaatcg taaatgctat cgagttccat
     5221 gtcgagaata ttggattttc gaactgcttc aataacagtt gcggtggaga ccatatcaat
     5281 cgagcgaact ggaatgccag tacgttccga aatgaccgga gcaaaacttg taagggagcc
     5341 catatcgacc agaagaagta gaccgcgccc catatccatt tctttcgcgc gctcggtcaa
     5401 tttatcaagc acgattttcg gactttgatc aagaggcata tcgattcctt ccacgagtcc
     5461 ttcaccgagt agttttttcg caacactaac catgctactc gctgtattat tcccatgcgt
     5521 tgcgacgagt acggcgacac gagcattttc ttgttctttt aaaagggaac taatgagtag
     5581 tgttaaatac atgacttcca tattaggaac ccggatgtgg aaagtagcct caatatcatc
     5641 cttaatttcc cgtgataatt cataggcttc cggttgatca ttgaccacat tttcgatatt
     5701 cgtatatttt aatggtttgt tactttcaat tcgtttaata aaagaggtaa ggtgaaggct
     5761 aaatgcaagc aagaagcgct cgtttaactt tttaccaagc tgatgttcaa ttcggagttc
     5821 aacaccttcc gcaaaattca ggatctcttc attgacgatt tttaagatat tttcgcgatt
     5881 gtggatcgta tttttaaact tattgtaaaa gctgttaagg tgaatatcga tatccatctt
     5941 gataaatttc ttaatatcat catcttccac accttgatcc attaaaatcg atgctttgtc
     6001 ttcaatgatt ttgtaaaggt tgaaattcgg ctcatattcg tccgatgtaa tcaacgtatt
     6061 atttagttca gggaaaatcg tcgtatatgg ctccaagtat tccgcaattg cttgaagttc
     6121 cttgcgacgg ttactgaagt ggaagaagcc gtcttttata ttaatcggca acgttttaaa
     6181 atcaatcaaa atctcttcat ctttgtcgaa actattaagg aaaccttgtg cgcaaacgag
     6241 ttgaatgttg gattttaatt gcccgatatt tccataagtt gtattaccaa tcagcgcttt
     6301 ggcagcttca tcttcaatac gaatcggttt attaactcgg tgcgcctcac tagaaagtaa
     6361 gtattttaaa agttccacac gttcaaacgc cgtacgttcc tccaaacttg gcagcgtaat
     6421 aataatcgga atacgacgca taaacgtttt caaaagcgaa gattccggat tttcggtagt
     6481 agcaccgata attaaaacgt tcgattttcg ggttcgatcc gtttcgccaa gtttattata
     6541 cgtaccagag tccattaagt aaaaaatcat ttcctgacct tcaggaggga gacggtgaat
     6601 ttcgtcgaga aacaaaattc caccttccgc tttttctaca agtccacctt tgtcattgtc
     6661 agcaccggtg aaagcacctt taacatgccc aaaaatgtgc gacatcaaaa gttgcggatt
     6721 attatagtaa tcggcgcaat tgaaaataat aaacggcgca tcagcaggta gacgtttggc
     6781 atgttgcgaa aaacgataca tcaaattagc aaaaagtgtc ttaccaacac cagtttgtcc
     6841 gagaatcatt gtatgtaaac catttggtgg atagagtaca gcggctttgg cctgctccac
     6901 aggggtttta agactgtcat taacaccaat taaatcatca aaagggcttc tttcaacaat
     6961 acttggtttg agcattttta aaaggggctc acagctgtca aactccaatt cattatcaga
     7021 aagtgtacgc ccaatttcat cttctaccgc ttttttagga aaataaagca ctggtcggcc
     7081 aacgatttta atgatttttc cttgtctgtg aagttcattc aattccatac tgacattatt
     7141 tcttaaaata gataatgttt ctgaaatagt actagctgta aaaccttcat tcttctctaa
     7201 ttgttcgcga atggttttcg tggaaggatt ttctaaaata aattcataaa tacggtcaat
     7261 acgcttcatc ataaaacctc catttagtgt atcgatgcac gattagtgta ttataaacga
     7321 ttaatacact ctggaattct gtatttatct tagcatgact agtgaaaatg tcaatgttta
     7381 tttaccaaaa atcaaattga ctagctacgc ggatagtact attatataga aggaacaaat
     7441 aaaatcgatg aggtgttcat aatgt
//
LOCUS       DASEAA010000127         7438 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.127, whole genome shotgun sequence.
ACCESSION   DASEAA010000127 DASEAA010000000
VERSION     DASEAA010000127.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7438)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7438)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7438
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.127"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(45..746)
                     /locus_tag="U0342_002178"
     CDS             complement(45..746)
                     /locus_tag="U0342_002178"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423521.1"
                     /translation="MLTVQLEGETRIQKLQSDQEKLATLLNDVEDDNTRQLLSMILKE
                     VKQEKIIEETEVKIKEIQLRLNETKEIAYQNDYKARITYLKDQLYELKRNKLAHVAEA
                     EGRFRAQLAHLDHLDFVQQQSKREKEHLRVIGIMPNVPRRQYNRKKYKEKPDYSKIIS
                     PLEIEKRGCIFFTRDHKEFVHLYNDLLINPKTMEVKTFREVLASTIHIRNSDGDIIFK
                     YAKNAFRPVIRMKVK"
     gene            1473..2417
                     /locus_tag="U0342_002179"
     CDS             1473..2417
                     /locus_tag="U0342_002179"
                     /inference="COORDINATES: protein motif:HMM:NF013540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2423522.1"
                     /translation="MVNKFGSELKNIRKTLGISQRELSNDGIIVSKSSLQRIENDKQT
                     PSVDIASLLLQRLDISSPEMEYRLNNFSLSEKEKLINEFREIGSSANVAGINSLLIKM
                     KNFLQSNYSAYISNLILILESLTLFQEEQSFENARKIVTPIWQSLEKRDEWLYKDILL
                     ISNIIYMFDGETFLNMKNRLLFFINKYYHLGTVKKLYIITLLNSVLYMKKNNRFLEAE
                     EDLNIALKKAKEQNEHIRYLDALSLKAELLWLKGEKEFAIKIAKESFIKLYCLEQFDI
                     LEDNIKDWEKLTNVKVDTFLKPLTGVASGKCGFTTVSI"
     gene            complement(2612..2989)
                     /gene="qacH"
                     /locus_tag="U0342_002180"
     CDS             complement(2612..2989)
                     /gene="qacH"
                     /locus_tag="U0342_002180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000121134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter QacH"
                     /protein_id="HEM2423523.1"
                     /translation="MSYLYLALAIVGEIIGSSLLKASEGFSKLYPTIGVIIAFVGCFF
                     FLSLSLKTIPLNTAYALWAGLGLVLTTVISVLVWKEKLNMASIAGITLILVGVVILNL
                     FGPGHGESGHEASETITMNETME"
     gene            complement(2989..3552)
                     /locus_tag="U0342_002181"
     CDS             complement(2989..3552)
                     /locus_tag="U0342_002181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002078386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM2423524.1"
                     /translation="MEVIMSISKHANKKKNILIAASEIVKEEGVVKLTLEAVAQRAGV
                     SKGGLLYHFPSKEALIKGMVEDWINNYFECINTLVNNDDDNAIGKWNRAYLKSTFSDL
                     ENNNLNSALMAAMFINPDLLDEFRQRYDILHTKLITDGIDPVKITITRLSIDGLWFSE
                     IFGMAPLNEELKTQVFDELINMIQEDE"
     gene            complement(3846..4064)
                     /locus_tag="U0342_002182"
     CDS             complement(3846..4064)
                     /locus_tag="U0342_002182"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423525.1"
                     /translation="MDTILKWFNWGVKSTDEVVFEEKIAELNSRMRRVNEEIDIELKR
                     RECEGFSAYISMQKENLVETKEDHWLIG"
     gene            4452..5330
                     /locus_tag="U0342_002183"
     CDS             4452..5330
                     /locus_tag="U0342_002183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014091653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2423526.1"
                     /translation="MEKTIGETIKFIRTSKNISQKEICLDNISRSSLVKIESNKTIPS
                     SLTLEFILLQLGIQQEEFAHIRNNFKLNTRQVLLEKFNNINTSIRIKQWLSLEQEMKQ
                     YLRKHSDSVIKEYLSIVKALIIIETEDDYKKASHHVYPIWKRISKNEVWFIDDIQLLT
                     CIFFMFENQVAITISQRLLKQTEKYLHMDNIKRIQANTLMNISTLYLNQKDYKNALEY
                     IDQTVHTAKKYEYFTLWLFAQGTQGILYCLEHKPEVGIPLIKKSIHLLKTLDQLDIAK
                     ALENDVSNFLTLDINN"
     gene            complement(5466..7133)
                     /locus_tag="U0342_002184"
     CDS             complement(5466..7133)
                     /locus_tag="U0342_002184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="primase C-terminal domain-containing protein"
                     /protein_id="HEM2423527.1"
                     /translation="MNKSLSEKDTYLYSAVINTTVKESLTAFRKRKSNGVLAIQDYYS
                     KLESSNSNRKGVQFVVRQKEDLQREKGACGYIVTSQEALLDAVDQISHWTPNTYRWGT
                     YSDNRRKYIKGHSEENLQQINTYVIDIDTLDVDVPKMIMASIKLLNQTPTYILQTQKG
                     FQMYFVLESAVFVSNANNFKSLRVAKRIATNLKHAFAEHLPAVDQGCNDFGFFRAPNT
                     NNVVFEKLNSQLVFKDLIAWSKQYSIDNNRQGLKLVKNSGLEKTYDATTQKWYRDLAN
                     LTNVKGHKNQYGRNNTIFTLALACYSAGKSYEETYNELDVFNSNLKHSVSNRELEKCI
                     ANAYSGKYKGAALEKVIAILQTYANSDYEVSYSKTFIYDETGRVKPQFYRKHKKERAE
                     RKYSHMQEWETDLEKYIEKTMLNGHVFIAKSQREIAEETKIPYATLKRLLKQSKRIIS
                     RVEGSGRAAKTLLSTVAIVVEAAIRHAMTKKQDKSEKYIRFLATFTEAANYVMHNFKN
                     KYHSTSTGSAILEALPSGHSPGQQIFLLLDKVYKTGQVERLKRLEGS"
BASE COUNT         2453 a         1303 c         1063 g         2619 t
ORIGIN      
        1 ttacaataat tttatagttt gcacaatata ggacgtttat tttattactt tactttcatt
       61 cttattactg gtcgaaaagc atttttcgcg tatttaaaaa taatatctcc atcactattc
      121 cgtatatgta tcgtagaagc taacacttca cgaaacgttt tcacttccat agtttttggg
      181 tttattaata agtcattgta gaggtgaaca aattctttgt gatctctagt aaaaaatata
      241 caacctcttt tttcaatttc taacggtgaa ataatcttac tataatctgg tttttcttta
      301 tatttttttc gattgtattg tcttcttgga acatttggca taataccaat tactcttaaa
      361 tgctcctttt cacgcttaga ctgttgctgt acaaaatcta aatgatctag atgagctaat
      421 tgcgctctaa acctcccctc tgcttcagca acatgagcta acttatttcg ttttaattcg
      481 tataattgat cttttaagta agtaattcgc gctttgtaat cattttggta cgcaatttct
      541 tttgtttcgt ttaaacgcaa ctgtatttct ttaatcttaa cttcagtttc ttcgattatt
      601 ttttcttgtt ttacttcttt tagtatcatt gatagtaatt gtcttgtgtt atcatcttca
      661 acatcattta ataacgtagc aagtttctcc tgatcagatt gcaatttctg aattctagtt
      721 tccccctcta actgaacagt aagcatctaa ttccctccct tagtttcaaa atccagtgaa
      781 acaaaaaaag cgccccccac caaagtgggg agcgctcacc aattattaat taccaattca
      841 agagtttagg tatagaaagt acaggaaaag caatcctttt gaccttttga tttctatgta
      901 aaaatcacaa aggacgtacg ttctctatag cattgtaact ctaaaagtga tacaataaca
      961 aacggtgagg cgccaacact aaggtttgta aatgtgttgg tgaggaagga attaaccttc
     1021 ctagcacatt gcagattaac cgccaagtaa atctactttg tgtgcttcgc ctattaattt
     1081 ttttgtctca actgaattcg ctttgactat acatcattgc gattacgttg tcaaatcatt
     1141 ttttagaatg ttttaaatca ttctttttta ttttatgtct aaatttttga acattttact
     1201 gtactttaga gtaaaatgcc tttagtcctt caagcagatt tcttttttaa gtataattgt
     1261 taggatagta atgaccctca caccattgct gtcctttctc ttatttcagc ctcctacttg
     1321 accatgtgac aagactgtta caattacact aactactgct aaagttaaaa acatttttta
     1381 tgcacctcct tatatggatt ctagcataca cattattaag attgagaaaa agcaccatat
     1441 ccggtacaaa aattttagaa aggtagagaa ggatggtaaa taaattcgga tctgaattaa
     1501 agaatattag gaaaacatta ggcataagcc aacgtgaatt atctaatgat ggtataattg
     1561 tttctaagtc tagtttacaa cgaatcgaaa atgacaaaca aactccatct gtagatatag
     1621 caagtttgtt actacagcga ttagatataa gtagtcccga aatggaatat agactgaata
     1681 atttttcatt gagtgaaaaa gaaaaactaa ttaacgaatt tagagaaatt ggatcttctg
     1741 caaatgtcgc tggtataaat tcattattaa tcaaaatgaa gaatttctta caatcaaatt
     1801 atagtgctta tatttcgaat cttattttaa tactggaatc cttaacttta ttccaagaag
     1861 aacagtcttt cgaaaatgcc agaaaaatag ttacacccat ttggcaatct ttagagaaac
     1921 gtgatgaatg gttatataaa gatattcttc tcatatcaaa tattatatat atgttcgatg
     1981 gagagacctt tcttaatatg aaaaaccgtc ttttgttttt tattaacaaa tattaccatt
     2041 taggaaccgt aaaaaaactg tatattatca cacttttaaa cagtgtcctt tacatgaaaa
     2101 aaaataatcg cttcttggaa gctgaagaag atctcaatat tgctctaaaa aaagccaaag
     2161 aacaaaatga acatatcaga tacttagatg cattatcact taaagcagag ctgctttggt
     2221 taaaaggtga gaaagaattt gctataaaaa ttgcaaaaga gtcttttatt aaattatatt
     2281 gtttagaaca atttgatatt ttagaagata atataaaaga ctgggaaaaa ttaacaaatg
     2341 taaaggttga tacattttta aaaccactta caggggtagc gtcagggaaa tgcggattta
     2401 caacggtaag catttgatac aagtcttatg agacagtcag aagtcattta aaacgctaat
     2461 ttcattatgt ctcaataaac tctactctat tggaattgtg aagtgataca cttaaactaa
     2521 cgtacgcagg tttgttgaat aaggacttca aaaaataccc ttaattaagc taaaaagtcc
     2581 ttctctttat taagaaggac ttttttatgt gttattccat tgtctcattc attgtaatag
     2641 tttcgcttgc ttcatgacca gattctccat gtcctggtcc aaacaaattc aatattacaa
     2701 ctcctacaag aatcagtgtt attcctgcaa tgctagccat gttaagtttt tccttccaaa
     2761 ctaaaactga aattactgta gtcaaaacaa gtcctaaacc tgcccataat gcatatgcag
     2821 tgtttaaggg gattgttttt agcgacaagg ataaaaagaa aaaacaacca acgaaagcta
     2881 ttattacccc tattgtagga tagagttttg aaaagccttc agatgctttt aatagggaag
     2941 agccaataat ctcccccact attgcaagtg ctaaatatag atatgacatt attcgtcctc
     3001 ctgaatcatg tttattagtt catcaaaaac ttgtgttttt agttcttcat ttaatggtgc
     3061 cattccaaat atttctgaaa accaaagacc atctatggat aatcttgtaa ttgttatttt
     3121 gacaggatca attccatcag ttattaactt tgtatgcaaa atatcgtatc tctgccggaa
     3181 ttcatctaat aaatctggat taataaacat agcagccatt agtgcggaat ttagattatt
     3241 gttttctaaa tcggaaaatg tagatttaag ataagcccta ttccattttc ctattgcgtt
     3301 atcatcgtcg ttattaacta acgtattaat gcattcgaaa taattattta tccaatcttc
     3361 caccattcct ttaattaatg cttccttgct aggaaaatgg tataataatc cacctttact
     3421 cacgccagct ctttgggcga ctgcctctaa tgtgagtttg acaactcctt cttcttttac
     3481 aatttcagat gcagcaatca atatattttt tttcttatta gcatgctttg aaatagacat
     3541 aataacctcc ataacttaga tacatataat ataccgtctg gacggttttt tgtcaatcga
     3601 attaaagctc ttatttaata tcactctttc acataaaaat aatccaataa attaatctaa
     3661 agattgtgaa gaaatgtact taaagtaaag ggagctttag ttcaacagtc gatttcttaa
     3721 aatcggcttt atttatgggt gaaaattaca ttaccgttgt aaatccgcat tttcaggact
     3781 ctacccctta cagagttatt taaactttaa tttaaaaaaa gacattcaaa gaatgtcttt
     3841 tatttttatc ctatcagcca atgatcttct ttagtttcca ctaagttttc cttttgcata
     3901 gaaatgtaag ctgaaaatcc ttcacattct cttcgtttta actctatatc aatttcttca
     3961 tttaccctac gcatgcgact atttagttct gctatttttt cttcaaaaac tacttcatct
     4021 gttgatttaa ctccccaatt aaaccatttt aagattgtat ccataagttt ttcatccctt
     4081 tctatgtttg tgtgttcagt ctaacacaca aaagtttaga aaaaccaaaa atgtaatgaa
     4141 atgtccgatt cttgtcatga acgacctgtt ttgttaactt tttaacacta ttttggatac
     4201 aatttgtaat tttcaaacac gataaaaaac ctttctattc ctaaataaaa aggctttttc
     4261 ctatcctctt ataatgctat cttaaaccca ccaatgccca caaagcaaag caattggagc
     4321 tgcgaaaata ctaaacattg cactctctcc caacgtttca tctatttatc ataaccataa
     4381 catggtatac tttgagaaga ataaaaatgg gtattattat acgcaaatat atgaaaagag
     4441 gataaatcat catggaaaaa acaataggag aaactattaa atttatacgt acatcaaaaa
     4501 atattagtca aaaagaaata tgtctagaca atatatcaag aagttcactt gtgaaaattg
     4561 aaagcaacaa aacaattcca tcctcattaa cacttgagtt tattcttcta cagcttggaa
     4621 tacagcaaga agagtttgca catattcgta ataactttaa attaaataca agacaagttc
     4681 tccttgagaa atttaataac ataaacacta gtatacgtat caaacaatgg ctctccttag
     4741 agcaagaaat gaaacaatac ttaagaaaac attcagattc tgtgattaaa gaatacctat
     4801 caattgtcaa agctttaatt attatcgaaa cagaagacga ctacaaaaaa gcaagtcatc
     4861 acgtataccc tatttggaaa cgtatatcta aaaatgaagt atggttcatt gatgatatac
     4921 agctacttac atgcattttt tttatgtttg aaaatcaagt agcaattact ataagtcaac
     4981 gcttattaaa acaaacagaa aagtatctac acatggataa tattaaacga attcaagcta
     5041 atacattgat gaatataagc actctatatt taaaccaaaa agattataaa aatgcgctag
     5101 aatacatcga tcaaactgta cacaccgcta aaaagtacga atactttaca ctatggctat
     5161 tcgcccaagg aactcaaggc atcctatatt gtcttgagca caaaccagaa gtcggtattc
     5221 ctctaattaa aaaatctata catctcctaa aaacattaga tcaattagat attgctaaag
     5281 cattagaaaa tgatgtcagt aatttcttaa ctctagatat caataattaa atcattaaag
     5341 gccttagaaa cacttaggcc tttttagttt tccatctatc aaaaactaaa gaattaatat
     5401 taatgcctgg tggaaaagct aacgtaacta gaattaagta aaaaggcaat tgagctcatt
     5461 aattgctaag agccctctag tcttttcaaa cgctctactt gtcctgtttt atacacttta
     5521 tcgaggagca aaaatatttg ttggcctgga ctatgtcccg atggtaatgc ctccaaaata
     5581 gcgcttcctg tgcttgtaga atgatactta ttcttaaaat tatgcattac atagtttgcc
     5641 gcttccgtaa aagttgctaa aaaacggata tatttttcac ttttatcttg ctttttagtc
     5701 attgcatgtc ttattgctgc ttctactacg attgcgacag tagataataa tgttttggcc
     5761 gcacgtccac ttccttcaac tcgcgaaatg attcgcttgg attgcttcag caatcttttt
     5821 aatgttgcat atgggatttt tgtttcttcg gcaatttctc tttgagattt cgcaatgaac
     5881 acatggccat ttaacatcgt cttctcaata tatttttcta aatcagtttc ccattcttgc
     5941 atatgtgaat attttcgttc tgctcgttct ttcttatgct ttctgtaaaa ttgaggttta
     6001 actctacccg tttcatcata gataaatgtc ttagaatagc taacttcata gtctgaatta
     6061 gcatatgttt gcaaaatagc tattactttt tctaatgctg ctcctttgta ttttccggaa
     6121 taagcatttg ctatacattt ttctaactct cgattactta cactgtgctt taaattagaa
     6181 ttaaaaacat ctaattcatt gtatgtttct tcataacttt tgcctgctga atagcaagct
     6241 agtgccaacg taaaaatagt attattacgt ccatattgat tcttatgccc tttaacattc
     6301 gtcagattag ctaaatcacg ataccatttt tgagttgtag catcataagt cttctctaat
     6361 ccggaatttt taactaattt aaggccttgt ctattgttat cgatagagta ttgtttagac
     6421 caggcaatta aatctttgaa aaccaattga ctgtttagtt tttcaaatac tacattgttt
     6481 gtatttggcg ctctaaagaa gccaaagtcg ttacaaccct ggtcaactgc tggcaaatgt
     6541 tccgcaaaag catgttttaa gttcgttgca atacgttttg caacacgtaa acttttgaaa
     6601 ttatttgcat tgctcacgaa cacagcgctt tctagcacaa aatacatttg aaagcctttt
     6661 tgtgtttgca atatgtatgt tggcgtttga tttaaaagtt ttatagatgc cataatcatc
     6721 ttgggtacat caacatctaa tgtgtcaata tcaattacgt atgtattaat ttgttgcaag
     6781 ttctcttcag aatgcccttt aatgtattta cgtcgattat ccgaataggt accccaacga
     6841 tatgtgttcg gtgtccaatg actaatttgg tctactgcat cgagaagcgc ttcttgactc
     6901 gtcacaatat atccgcatgc acctttttca cgctgcaagt cttccttttg tcgaacaaca
     6961 aattgcactc ctttgcgatt gctattacta gattctaatt tagagtagta atcttgaatg
     7021 gctaatacac cattactttt tcgtttccgg aatgctgtta ggctttcttt aactgttgtg
     7081 ttaataacag ctgaatacaa atatgtatct ttttcactca agcttttatt catgtctgga
     7141 ggctcctttc gttttttcta aacaaaaaaa ggacaagtaa cttcctcacg aagttatttg
     7201 tccttaaaag acatcataaa tttccgcata ggaagataaa tttcgacatc ctagcagaaa
     7261 aaagttcgaa aatggctttg tatcagtgtt taaaaccatt gtcaaataga cctaaatgtg
     7321 atataatttt tttgaggaaa aaattatatt tcacttttgg gatagttgct aggaattaca
     7381 tttttggtcg aatgtggttc aatttatatt ttgcatttgg tcgatgcaag atataaat
//
LOCUS       DASEAA010000128         7387 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.128, whole genome shotgun sequence.
ACCESSION   DASEAA010000128 DASEAA010000000
VERSION     DASEAA010000128.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7387
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.128"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            12..569
                     /gene="efp"
                     /locus_tag="U0342_002185"
     CDS             12..569
                     /gene="efp"
                     /locus_tag="U0342_002185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011231892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor P"
                     /protein_id="HEM2423528.1"
                     /translation="MISVNDFKTGLTIEVDNGIWRVLDFQHVKPGKGAAFVRSKLRNL
                     RTGAIQEKTFRGGEKVAKAQIDNRKMAYLYADGTNHVFMDNESYEQIELPEDQIAHEL
                     KFLKENMEINIIMYQGETIGIDLPNTVELVVTATDPGIKGDTSSGGSKPATLETGLVV
                     QVPFFVNEGDKLVINTTEAAYVSRA"
     gene            728..1207
                     /gene="accB"
                     /locus_tag="U0342_002186"
     CDS             728..1207
                     /gene="accB"
                     /locus_tag="U0342_002186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxyl carrier
                     protein"
                     /protein_id="HEM2423529.1"
                     /translation="MLSIDEIKQLIELIDESTLDEFELETKDSKILLKKNKTVVAAAV
                     QEAPIAITQAPAQAAPVAQAQTAAPQTEANTAEDASLEVITSPMVGTFYASASPEDAN
                     FVSVGSKVSAQSVVCIVEAMKLFNEITADIDGEIAEILVSSGELVEFGQPLFKVRKK"
     gene            1221..2585
                     /gene="accC"
                     /locus_tag="U0342_002187"
     CDS             1221..2585
                     /gene="accC"
                     /locus_tag="U0342_002187"
                     /EC_number="6.3.4.14"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acetyl-CoA carboxylase biotin carboxylase
                     subunit"
                     /protein_id="HEM2423530.1"
                     /translation="MIKKVLVANRGEIAVRIIRAAKELGVETVAIYSEADKEALHIQL
                     ADEAYCVGPAATKDSYLNMSNIISLAVLTNCDAIHPGYGFLAENADFAELCEDCNITF
                     IGPSASAISQMGTKDVARETMRKAGVPIVPGSQGIVKDVEDGKKIAKKIGYPVIIKAT
                     AGGGGKGIRVAENEEKLISGIQTTQQEAEAAFGDPGVYLEKYIQDFRHVEIQVLADNH
                     GNVIHLGERDCSIQRRLQKLIEESPSPAIDEKTRQKMGKAAVKAAKAVNYSGAGTIEF
                     IFDHHENNFYFMEMNTRIQVEHPVTELVTGVDLVKQQFLVASGEELQIKQADVKLTGW
                     AMECRINAENPEKNFMPAPGEIKFYLPPGGLGVRIDSAAYPNYKIPPYYDSMIAKVIC
                     YAETREEVIQKMKRALSEFAIDGIPSTIPFHLRVLDNDVFLSGDFNTKFLEQNDVMNL
                     SKEG"
     gene            2589..2996
                     /locus_tag="U0342_002188"
     CDS             2589..2996
                     /locus_tag="U0342_002188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Asp23/Gls24 family envelope stress response
                     protein"
                     /protein_id="HEM2423531.1"
                     /translation="MAYTKDLRKQNDAPLGKIEIAPEVIGVIAGLAASEIENVAYMQG
                     GFATEMREKFSGAVNYRKGVKVELTEEGILIELYCSVLFGATIPLVAQNIQDAVRDTI
                     FNMTGLNVLEINVHIVGVQFEKTETLSFDDFEL"
     gene            3027..3413
                     /gene="nusB"
                     /locus_tag="U0342_002189"
     CDS             3027..3413
                     /gene="nusB"
                     /locus_tag="U0342_002189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464884.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription antitermination factor NusB"
                     /protein_id="HEM2423532.1"
                     /translation="MKRREAREKALQALFQIELNEMSLDQAIKNIMEDEQDDYMEKLV
                     EGVMANKAEIDAIIEPNLDNWRMDRLSKVDLSLLRLSVYEIKYLDDVPNRVSLNESIE
                     IAKIYSDEKSSKFINGVLANIAPEDK"
     gene            3510..4364
                     /gene="folD"
                     /locus_tag="U0342_002190"
     CDS             3510..4364
                     /gene="folD"
                     /locus_tag="U0342_002190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional methylenetetrahydrofolate
                     dehydrogenase/methenyltetrahydrofolate cyclohydrolase
                     FolD"
                     /protein_id="HEM2423533.1"
                     /translation="MGEIIDGKKLAKEIQEKVTREVAELVKEGKKPGLAVVLVGDNQA
                     SRTYVRNKQKRTEEAGMKSVLIELPENVTEEKLLSVVEELNEDKTIHGILVQLPLPEH
                     ISEEKVIDTISYDKDVDGFHPVNVGNLFIGKDSFVPCTPAGIIELIKSTGTQIEGKRA
                     VVIGRSNIVGKPVAQLLLNENATVTIAHSRTKDLPQVAKEADILVVATGLAKFVKKDY
                     IKPGAIVIDVGMDRDENNKLCGDVDFDDVVEEAGFITPVPGGVGPMTITMLLANTLKA
                     AKRIWKMN"
     gene            4383..5735
                     /locus_tag="U0342_002191"
     CDS             4383..5735
                     /locus_tag="U0342_002191"
                     /EC_number="3.1.11.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII large subunit"
                     /protein_id="HEM2423534.1"
                     /translation="MEQDKYLTVAAITKYIEKKFEVDPYMKQVFVRGEISNLKQPASG
                     HLYFTVKDEFAMLRSVMFHKAVQKIGFVPEDGMNVLITGRIGVFTKAGRYQFYAEHME
                     PDGVGALYIQLEQLKSQLEKEGLFAETHKKVLPSFPSKVAVVTSKTGAAVRDILTTIH
                     RRMPSVEVIVYPTIVQGEKAAQKIVENIGKINQRNDIDVMIIGRGGGSLEELWAFNEE
                     PVVRAVYDSDVPVISAVGHETDFALSDFSADVRAATPTAAAELAVPDYRDLEERLAER
                     KYRLLAVTRQELERKERSLEQLKQHLILNGPKHQLEQQMERTDYFSERLNNAFSKQIF
                     VKQTVFDRLNDRLHYYHPNKEIELQKEQMALRLQALEKAMKQLLKDKQQSFFRQIDAL
                     EHLSPLSLLKRGFGVTYKENMLVKSVQELEVGDNIQVKMQGGQIEALITAKEEDISGN
                     "
     gene            5725..5952
                     /locus_tag="U0342_002192"
     CDS             5725..5952
                     /locus_tag="U0342_002192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464887.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease VII small subunit"
                     /protein_id="HEM2423535.1"
                     /translation="MATKKKTFEEAIAELETIVEALENGSASLEDSLDMYQKGIELTK
                     LCQDKLQSAEKRMAKVVTDAGEEIPFEADGE"
     gene            5955..6836
                     /locus_tag="U0342_002193"
     CDS             5955..6836
                     /locus_tag="U0342_002193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464888.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyprenyl synthetase family protein"
                     /protein_id="HEM2423536.1"
                     /translation="MQDLTLFLEQYKKVIDESLFKEISERNIEPRLKESMLYSVQAGG
                     KRIRPMLVFATLQALKVNPLLGVKTATALEMIHTYSLIHDDLPAMDNDDYRRGKYTNH
                     KVFGDATAILAGDALLTLAFSILAEDENLSFETRIALINQISFSSGAEGMVGGQLADM
                     EAENKQVTLEELSSIHARKTGELLIFAVTSAAKIAEADPEQTKRLRIFAENIGIGFQI
                     SDDILDVIGDETKMGKKTGVDAFLNKSTYPGLLTLDGAKRALNEHVAIAKSALSGHDF
                     DDEILLKLADLIALREN"
     gene            7035..7235
                     /locus_tag="U0342_002194"
     CDS             7035..7235
                     /locus_tag="U0342_002194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cold-shock protein"
                     /protein_id="HEM2423537.1"
                     /translation="MEQGTVKWFNAEKGFGFIERENGDDVFVHFSAIQGDGFKSLDEG
                     QAVTFDVEEGQRGPQAANVQKA"
BASE COUNT         2543 a         1232 c         1571 g         2041 t
ORIGIN      
        1 ggaggaaaaa catgatttca gtaaatgact ttaaaacagg gttaacaata gaagtagata
       61 atggtatttg gcgtgtgcta gattttcaac atgtaaaacc cggaaaagga gcagcattcg
      121 ttcgttccaa attacgtaac cttcgtacag gtgcaatcca agaaaaaaca ttccgtggtg
      181 gcgaaaaagt agcaaaagcg caaatcgaca accgtaaaat ggcctacttg tatgctgacg
      241 gcacaaatca cgtattcatg gataatgagt cttatgaaca aattgagctt ccagaagacc
      301 aaattgctca tgaacttaaa ttcctaaaag aaaatatgga aattaatatt atcatgtatc
      361 aaggcgaaac aatcggtatt gatttaccta acacagtaga attagttgtt actgcaactg
      421 atcctggaat taaaggtgat acttcttcag gcggttctaa accagccact cttgaaactg
      481 gtcttgttgt ccaagtgcca tttttcgtta atgaaggaga caaactagta attaatacaa
      541 ccgaagcagc gtatgtttct cgggcgtaag caagaatcgt ttactacagc tggagttaat
      601 tcttcagctg tttttctatt tcttagcgct tccagtacac cttttgaata aaaagtatgg
      661 tacaataagg acaatgcgtg attcatgcaa ttttttattt ttagtattat taaggagtgt
      721 aaatggtatg ttatcaatag atgaaattaa acagctaatc gagctgattg acgagtcaac
      781 cctagatgaa tttgagttag aaacgaaaga tagtaagatt ttgcttaaaa agaataaaac
      841 ggttgttgct gcagcagttc aagaagcacc aattgctatc acacaagcac cagctcaggc
      901 agcaccagta gcacaagctc aaacagctgc tcctcaaaca gaagcaaata cagcggaaga
      961 tgctagttta gaagtcatta catcgccaat ggttgggact ttttacgcat ctgcttcacc
     1021 agaagatgct aattttgtta gcgttggatc taaagtatct gcgcaatctg ttgtatgtat
     1081 tgtagaagca atgaaattat tcaatgaaat tactgctgat attgacggag aaatcgcaga
     1141 aattcttgtt tcaagtggcg aattagtcga atttggacaa ccactattca aagttagaaa
     1201 aaaataaggg gtcgaaaaac atgattaaaa aagtactggt agcgaaccgt ggagaaatcg
     1261 ctgtccgtat cattcgcgct gcaaaagaac ttggagtgga gacagtggcg atttattcgg
     1321 aagcagataa agaagcgcta catattcagc tggcggatga agcttattgt gtaggtcccg
     1381 cggcaacaaa agatagttat ttaaatatgt ccaacattat tagtcttgca gttttaacga
     1441 actgtgatgc tattcaccca ggctatggtt tcttagccga aaatgcagat ttcgcggagt
     1501 tatgcgaaga ctgtaatatt acttttatcg gaccaagtgc ttccgctatt tcgcaaatgg
     1561 gaacaaaaga tgtagcccgc gaaacgatgc gtaaagcagg tgttccaatc gttcctggtt
     1621 cgcagggaat cgttaaggat gtagaagatg gcaaaaaaat cgctaagaaa atcggttatc
     1681 cggttatcat taaagcaaca gctggcggtg gcggtaaagg tatccgtgta gcagaaaatg
     1741 aagaaaaatt aatttctggc attcaaacta cccaacaaga agccgaagcc gcatttggtg
     1801 atcctggcgt ttacttagaa aagtatattc aagatttccg ccatgtagaa attcaagtgc
     1861 ttgctgataa ccatggtaac gttattcatt taggagaacg tgattgtagt attcaacgtc
     1921 gcttacaaaa gctaattgaa gaatcaccat cacctgccat tgatgaaaaa actcgccaaa
     1981 aaatggggaa agctgctgtt aaagctgcca aagccgtgaa ttattctggc gcaggaacga
     2041 ttgaattcat tttcgatcac catgaaaata atttttactt tatggaaatg aatacgcgta
     2101 tccaagtaga acacccggta accgagcttg ttactggtgt tgatttagtg aaacaacaat
     2161 ttctagttgc ttctggggaa gaactacaaa ttaaacaagc agatgtgaaa ttaacaggtt
     2221 gggcgatgga atgtcgaatt aacgctgaaa atccagagaa aaactttatg ccagctccag
     2281 gtgaaattaa attttatctt cctccaggtg gcttaggtgt tcgaattgac tcagcagcat
     2341 atccaaacta caaaatccca ccatactatg attcgatgat tgccaaagta atctgttatg
     2401 cggaaacacg ggaagaagtg attcaaaaaa tgaaacgtgc gttgtccgaa tttgccattg
     2461 atggcattcc ttcaacgatt ccgttccatt tacgtgtatt agataatgat gtgtttttat
     2521 caggcgactt caataccaaa ttcttggagc aaaacgatgt aatgaatctt tctaaggagg
     2581 gctaaataat ggcttataca aaagatttgc gtaaacaaaa tgatgcaccg cttggcaaaa
     2641 ttgagattgc acctgaagta atcggcgtaa ttgctggact tgccgcaagt gaaattgaaa
     2701 atgttgctta tatgcaaggt ggctttgcaa cagaaatgcg tgagaaattc agtggtgctg
     2761 taaactaccg taagggcgta aaagtagaac taaccgaaga aggaattcta atcgaacttt
     2821 attgttcagt cttatttggc gcaactattc cacttgttgc tcaaaatatt caagatgctg
     2881 tcagagatac catttttaat atgactggtt taaatgtact tgaaatcaac gttcatatcg
     2941 ttggtgtaca atttgaaaaa acagaaacac tttccttcga tgattttgag ctataaaatt
     3001 caaggaacaa aaggagcagc tttaacatga aaagaagaga agcgcgcgag aaagcacttc
     3061 aagcactatt ccaaatagag ctaaacgaaa tgtcgctaga tcaagctatt aaaaacatca
     3121 tggaagacga gcaagacgac tatatggaaa aattagtcga aggcgtaatg gcgaataaag
     3181 ctgaaattga tgctatcatt gagcctaatt tagataattg gcgcatggat cgtttgagta
     3241 aagtcgatct atccttactt cgactaagtg tctatgaaat taagtacttg gatgatgtgc
     3301 caaatagagt tagtttgaat gaatccatcg aaattgcaaa aatttacagt gatgaaaaat
     3361 caagtaaatt tattaatggc gtacttgcta atattgcacc ggaagataaa taagcttgat
     3421 tgagtgcaag ggaaatctct tgcactccct tatttcgtga tttttttaag aataattacg
     3481 tggaaagtat ttttaagggg gcaatactca tgggagaaat tattgatggc aaaaagttag
     3541 caaaagaaat tcaagaaaaa gtaacaagag aagtagctga attagtaaaa gaaggtaaga
     3601 aaccagggct tgctgttgtg ctcgttggcg acaatcaagc atctcgtaca tatgtaagaa
     3661 ataaacaaaa acggacagaa gaagcgggga tgaaatccgt tttaattgaa cttccagaaa
     3721 atgtaacaga agaaaaatta ctatctgttg tagaggagct taacgaagat aaaactattc
     3781 atggcatact cgtgcagtta ccactaccag aacacatttc agaagaaaaa gtaattgata
     3841 ctattagcta tgacaaagat gttgacggtt tccatccagt gaatgtaggt aatttattca
     3901 tcggaaaaga ttcttttgtt ccttgtacac cagcaggaat tattgaactt ataaaatcga
     3961 ccggcactca aatagaaggc aaacgcgctg ttgttattgg tagaagtaac atcgtaggga
     4021 aaccagtagc tcaattactg ttaaatgaaa acgcgacagt aaccattgcg catagccgta
     4081 caaaagattt acctcaagta gcgaaagaag cagatattct tgttgtagcg acaggcctag
     4141 cgaaattcgt gaaaaaagat tatatcaaac caggcgcgat tgttattgat gttggcatgg
     4201 atcgcgacga aaataataag ctatgcggtg atgtggactt tgatgatgtg gtagaagaag
     4261 caggatttat cacgccggta ccaggtggcg ttggcccgat gacaatcaca atgctacttg
     4321 cgaacacatt aaaagcagca aaacgcattt ggaaaatgaa ttgattaatt ggatgtgaaa
     4381 tgatggagca agataaatat ttgacggtag cagcaataac caaatatatc gaaaaaaagt
     4441 ttgaagtaga tccctacatg aagcaagttt ttgtgcgcgg tgaaatttct aatttaaaac
     4501 aaccagcgag tggacatcta tattttacgg taaaagatga atttgcgatg cttcgttctg
     4561 tcatgtttca caaagcagtt caaaaaattg gttttgtccc agaagatggt atgaatgtcc
     4621 ttatcacagg acgaattggc gtatttacaa aagctggtcg ctatcagttc tatgcagaac
     4681 atatggaacc agatggtgtc ggagcgcttt atattcaatt agagcaatta aaatcgcaat
     4741 tggaaaagga agggcttttt gcggaaacgc ataaaaaagt gcttccttct ttcccgtcca
     4801 aagtcgctgt cgttacgtcc aaaactggtg cggctgttcg tgatatacta accaccattc
     4861 atcgaagaat gccttctgtg gaagtgattg tttatccaac tattgttcaa ggggagaaag
     4921 cggctcaaaa aattgtcgaa aacattggca agattaatca gcgaaatgat attgatgtta
     4981 tgattattgg gcgtggtggt ggttcgcttg aagaactatg ggcttttaat gaagaacctg
     5041 ttgttcgagc agtatatgat tccgatgtac ctgtaatttc agcggtcgga catgaaactg
     5101 attttgcgtt aagtgatttt tctgcagatg tacgagccgc aacgccaact gcggcggcag
     5161 aacttgctgt tccagattat cgcgatttag aagaacgatt agcagaacgt aaataccgtt
     5221 tgctcgcagt caccagacaa gaattagaaa gaaaagaacg gtcactagag caacttaaac
     5281 aacacttgat tttaaatggt ccgaaacatc aattagaaca gcaaatggaa cgtacagatt
     5341 atttttccga acgattaaat aatgcttttt ctaaacaaat atttgttaag caaacagttt
     5401 ttgaccgatt aaatgatcgg ctacattatt accatccgaa taaagaaatt gaactacaaa
     5461 aagaacagat ggcactacga cttcaagcat tagaaaaagc gatgaaacaa cttttgaaag
     5521 acaaacaaca atctttcttt cggcaaatag atgcgctaga acatctgagt cctctttctt
     5581 tattgaaacg aggatttggt gtaacgtata aagagaatat gctggttaaa tcagtgcagg
     5641 agcttgaagt cggcgataat atccaagtga aaatgcaagg cggacagata gaggcactca
     5701 ttaccgcgaa ggaggaagat ataagtggca actaaaaaga aaacttttga agaagcaatt
     5761 gcagaattag aaacaatcgt agaagcactc gaaaatggta gtgcctcact tgaagattct
     5821 ctcgatatgt accaaaaagg aatcgaacta acaaaattgt gccaagataa attacaatca
     5881 gcagaaaaac gaatggcaaa agtagtcaca gatgcaggag aagaaattcc ttttgaagcg
     5941 gatggtgaat aaatttgcaa gatttaaccc tttttctaga acaatataaa aaagtgattg
     6001 atgagtcgct ttttaaagaa ataagcgagc gaaatatcga acctagacta aaagagtcca
     6061 tgttatattc tgttcaagca ggtggaaaac ggattcgtcc catgctagtt tttgctacac
     6121 ttcaagcctt aaaagtaaat ccgcttttag gtgtgaaaac agcaacggcg ttagaaatga
     6181 ttcatacgta tagcctgatc catgatgatt taccagcaat ggataatgat gactatcgtc
     6241 gcggcaaata tactaatcat aaagtttttg gggatgcaac tgcgattttg gcaggagacg
     6301 ctttactaac gcttgctttt tctattttag cggaagacga aaatttatct tttgaaacac
     6361 gcatagcttt gattaatcaa attagtttta gtagtggtgc agaaggaatg gttggcggtc
     6421 aacttgcaga tatggaggca gaaaacaaac aagtgacatt agaagaacta tcatccatcc
     6481 atgcacggaa aacaggcgaa ttattaattt ttgccgtaac ttctgctgcg aaaattgcag
     6541 aagctgaccc agaacaaacg aaaagattac ggatttttgc ggaaaatatt gggattggat
     6601 tccaaatcag tgacgatatt ttagatgtta ttggtgatga aacaaaaatg ggtaaaaaga
     6661 caggggtcga cgcttttctg aacaaaagta cctatcccgg attactcacg cttgatggtg
     6721 ccaaaagggc attaaatgag catgttgcga ttgcaaagtc agcgctttca gggcatgatt
     6781 ttgatgatga aattctcttg aaacttgctg atttaatcgc acttagagaa aattaatcat
     6841 aattatctag taatttcaaa tttttttcac atatataatt caaattgatt tgcttttcct
     6901 aaaataccgt gttatactaa tgtaagatta tttttgtggg tgaaagatac gattgtgaac
     6961 aactttccat ctcgtgccgt taagcaagaa tagtaaataa ttagtgtgca taacacacga
     7021 ggaggaacat gaacatggaa caaggtacag taaaatggtt taacgcagaa aaaggatttg
     7081 gttttatcga acgcgaaaac ggtgacgatg tattcgtaca tttcagcgct atccaaggcg
     7141 acggattcaa atctttagac gaaggtcaag cagtaacttt cgacgttgaa gaaggccaac
     7201 gcggacctca agcagctaac gttcaaaaag cgtaattcta ttttttgaat aagaaaaagc
     7261 aaatcatttc ggtgatttgc ttttttattt gcctaaaatt attttacctt gtttggttta
     7321 atggtgattg tttgctataa taagaacaat taattgagaa aaaagacctt gcacacattc
     7381 atgcaag
//
LOCUS       DASEAA010000129         7348 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.129, whole genome shotgun sequence.
ACCESSION   DASEAA010000129 DASEAA010000000
VERSION     DASEAA010000129.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7348)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7348)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7348
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.129"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1457
                     /locus_tag="U0342_002195"
     CDS             <1..1457
                     /locus_tag="U0342_002195"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="catalase"
                     /protein_id="HEM2423538.1"
                     /translation="KNLTTNQGVPVGDNQNSMTAGRKGPTLIEDYVLIEKLAHFDRER
                     VPERVVHARGAGAHGKFVTKKSMKKYTMAKFLQEEGTETEVFARFSTVIHGQHSPETL
                     RDPRGFSVKFYTEEGNYDFVGNNLPVFFIRDAIKFPDVIHSLKPDPRTNIQDGNRYWD
                     FFSLTPEATTMIMYLFSDEGTPASYREIRGSSVHAFKWINEEGKTVYVKLRWIPKAGI
                     VNLSTEQASQIQAKEFNHASRDLYEAIENGDYPEWDLYVQVLDPKDLDNFDFNPLDAT
                     KDWFEDVFPYEHVGTMTLDRNPDNIFAETESVGFNPGVLVRGMLPSEDRLLQGRLFSY
                     SDTQRHRVGPNYLQLPINSPKAPVANNQRDGHMPFKQQTSSINYEPNSYDTEPKENPA
                     FIEPEQEIRGDISGRLIAEKPNNFGHAKEVWDRYSDAERAALVKNIVDDWSQVRDDIK
                     IRNLRNFYQVDPEFASRVAAGTGVNLEAHVADLK"
     gene            1668..3584
                     /locus_tag="U0342_002196"
     CDS             1668..3584
                     /locus_tag="U0342_002196"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BglG family transcription antiterminator"
                     /protein_id="HEM2423539.1"
                     /translation="MSASKLSLPRWKQIVHMLYLKMEFISGGELGEALAVNPRTIRND
                     IKVINQILMIGGNRIESLPGVGYRLVIGDEKALREALLDDSIGRANMNIVPMFAEDRA
                     DYIIRYLLLKNDYVKLETLSEELFVSKSTINLDILEVKRKLKENELKVEKRAGYGIRI
                     TGAELAIRFCFSRYLLVESTSPLITETEINFFGEVNLEMMEQIVVSNIAKYNIHMTDI
                     SVKNLIIHIAIAVCRVKDNCYVPATDLEDIEFSMPELRAAQGIIKEIDLSEGIRFPES
                     ETAYLLLHLSSKNRKSDFNNYREYIIVDKMLEKIKELYGYDFKQDQKMISNIALHLKP
                     AINRIKFNMNIQNPYLKNLKANYPLAFELGLVAKEVLEQELKTNVDEAEVGYLAIHFL
                     YGLDKEIGSEKQKVLIVCASGLGTSQLLESKVRKEFENTLEIVGVYSFKEYEQSGTAC
                     DFVISTVPLRMKLHPFIQVSPFLTKADIRNITALMKQDETKNQFEVDKVFKESLFLIS
                     DKKDKEQVLVDLASLLLENNIVGEDYLPSLFEREEIVPTYLGNGLAAPHPIEANVQET
                     AIGVCIFTGGGVKWNEEDQAQVIFMLAVKNKQQQQLATVYELISNLVESPKAMGELKR
                     VTSFEEFMRVLQTI"
     gene            3734..5029
                     /locus_tag="U0342_002197"
     CDS             3734..5029
                     /locus_tag="U0342_002197"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIC"
                     /protein_id="HEM2423540.1"
                     /translation="MKKFIEKLSWLSQKLGNQIHLKSMRDAFATILPFIMLAGFMVLI
                     NNVIIKPDGFMSAIISSETLTTWQGLGNSIVNGTLGIITILIGASVAYFLAQNRKFEN
                     PFAPALMTIALIVIFIPAVTEIVPIGAEKSVEVAGVLPIALMGSAGMFVGIVTALLAT
                     EVFIRLSKSEKMKIHISGDSVPPAVIKSFNVLIPTMLTILIFAFISFLVVTLFSLNLY
                     SLISAIIQEPLTFLVTSVPGFLTLMTISQMLYSIGIAGSGILGPIMDPVLLANMQENM
                     TAFANHTEIPHIINTTFRDVFGVMGGGGNTIALLIAIFIWSKRKDYREIATLSAAPGL
                     FNINEPVVFGLPIVYNLSLMIPFIISTPLCLCLAYFATKLHMISEVVVMVPWTTPVVA
                     SGFLATGGDWRAAVFQIFLIGVCVLLYLPFLKANDRIKA"
     gene            5044..5343
                     /locus_tag="U0342_002198"
     CDS             5044..5343
                     /locus_tag="U0342_002198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2423541.1"
                     /translation="MKNIMLMCNAGMSTSVLVRKMERVVEERNLELTIWAISETDFEK
                     NWRKADAILLGPQVNYMKDKVIDTVGDNVSVAVIDIVDYGRMNGEKVLDLAISLL"
     gene            5378..>7348
                     /locus_tag="U0342_002199"
     CDS             5378..>7348
                     /locus_tag="U0342_002199"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 3 C-terminal
                     domain-containing protein"
                     /protein_id="HEM2423542.1"
                     /translation="MAVYLDKEKPVSERVEDLLSKMTLAEKCGQLNQRMYGWEAFSRD
                     GETFHITEKFKEEVTRFEGIGALYGLFRADPWSKMNKDTGVSRKNAGKVANKIQRYVI
                     ENTRLGIPVLLAEEVPHGHQALDSESYPVNLARAASFNPELQKQVASAITEEISEKGV
                     HLALASALDILRDPRWGRAEECYGEDPYLAAELTAAITEGFQASGKIAVILKHFAAQG
                     EPIGGHNSGPVSIGVRELREIFLEPMRAGIRSGALGVMAAYNEIDGVPCHANKELLTT
                     ILREEMGFSGIVMADGCALDRLLKLNPDPKKAAKMALEAGVDLSLWDEVFPFLEESVE
                     KGILDEKVVDDAVRRVLQVKFQLGLFEQPFVEEEIQAPKSDWKQLNLQAAREGICLLK
                     NDFETLPLVGERKKIAVVGPSIDALYNQLGDYTAPQNESECVTVLEGIKKLLPKNWEV
                     VSEKGTEIREELPDGIQRAEVVAKEADAIVMVLGGSSARNFDMEFLNNGAVSSKGPNM
                     DAGENVDVADITLPQPQLDLFYAMKRTGKPVIVVMIQGRPIAIPEISSTADAILTAWY
                     PGSVGGTAIAEVLFGHYNPSGKLPVSIPRSSGQIPIYYNQKAVEYKEDYFDLTGKPLY
                     PFGYGLSYSAFEYQDLQIKQESIKIAELLGGQS"
BASE COUNT         2310 a         1179 c         1689 g         2170 t
ORIGIN      
        1 gaaaaaattt aacgacgaat caaggtgtgc cagttggtga taaccaaaat tcgatgacag
       61 cgggacgtaa aggaccaact ttgatagaag attatgtgct tattgagaaa ttggcacatt
      121 ttgatagaga gcgagtacca gaacgggttg tacatgctcg tggtgctggt gcgcacggga
      181 aatttgtcac taagaaaagc atgaaaaaat atacaatggc taaatttttg caagaagaag
      241 gaacggaaac ggaggttttt gctcgttttt caacagtaat tcatgggcaa cattctccag
      301 aaacattacg tgatccacgc ggtttctccg ttaagtttta tacagaagaa gggaattatg
      361 attttgtcgg aaataatttg ccggtattct tcattcgtga tgcgattaag tttccggatg
      421 ttattcattc cttgaagcct gatccacgca caaatattca agatggcaac cgttactggg
      481 atttctttag ccttacaccg gaagctacga cgatgattat gtacttattc agtgatgaag
      541 gaacgccggc ttcttaccgc gaaatacgtg gctctagtgt tcatgcgttc aaatggatta
      601 acgaagaagg caaaacagtt tatgtaaaac tgcgctggat tccaaaagcg ggaatagtga
      661 acctttcgac ggagcaagct tctcaaattc aagcaaaaga atttaaccat gcaagtcgtg
      721 atttgtatga agcaattgaa aatggagact atccagagtg ggatttatat gtgcaagtgt
      781 tggatccgaa agacttggat aactttgatt ttaatccatt agatgcaaca aaagattggt
      841 ttgaagatgt atttccttat gaacacgtag gaacaatgac gcttgaccgc aacccagata
      901 atatttttgc ggagacagaa tcggttggtt ttaatcctgg ggtacttgta cgtggaatgc
      961 ttccttctga agaccgttta ttgcaaggtc gtttattctc ttactcggat acgcaaagac
     1021 atcgtgtagg gccaaactac ttacaactcc caattaacag tccgaaagcg cctgtcgcga
     1081 acaaccaacg tgacggtcat atgccgttta aacaacaaac aagttcgatt aattatgagc
     1141 caaatagtta cgatacagaa ccaaaagaaa atccagcgtt tatcgagcca gagcaagaaa
     1201 tccgtggtga tatttctggg cgcctgattg cagaaaaacc aaataacttt ggccatgcaa
     1261 aagaagtatg ggatcgttat tcagatgcag aacgtgctgc actcgtgaaa aacattgtcg
     1321 atgattggtc acaagtacgt gatgatatta aaatccgcaa cttacgtaat ttctatcaag
     1381 tagatccgga attcgctagt cgagtggctg cgggaactgg tgttaatctc gaagcacatg
     1441 tagcagattt aaaataaatc aaagcgaaaa tcctttttag ggttttcgct tttttatgtt
     1501 tcacgtgaaa ctttttgggc tagaagattg gagtaaaggc atttttaacg atattgcttt
     1561 ttatcgaaat acttgctact atttctggaa gacttgtcgt tatcaggtga taggcttata
     1621 atcaagatga aatagcttaa attaattgtc gtgaggagtg gagctgcgtg agtgcttcaa
     1681 aattatcatt acctagatgg aaacaaatag ttcatatgct ttatttgaag atggagttta
     1741 ttagcggtgg agaattaggg gaggcattag ctgttaaccc tcggacaatt agaaatgata
     1801 ttaaagtaat taatcaaata ctgatgatag gcggaaacag aatcgaatca cttcctggtg
     1861 taggatatcg tctggtcatt ggtgatgaaa aagcgctgcg tgaagctctt ttggacgatt
     1921 cgataggaag agctaatatg aatattgtac cgatgtttgc agaggataga gcagattata
     1981 ttattcgata tttattactc aaaaatgact atgtaaagct ggagacgttg tcagaagagc
     2041 tttttgttag taagtctacg ataaacttgg atattttaga agtgaaacga aaactcaaag
     2101 aaaatgagtt gaaagtggaa aaacgggctg gctatggcat tagaattact ggtgcagaac
     2161 ttgctatccg attttgcttt tcaagatatt tgttagtgga atctacaagc ccgcttatta
     2221 cagaaacaga aataaatttt tttggagaag ttaatttgga aatgatggag cagattgtcg
     2281 tttctaatat agcgaaatat aatattcaca tgacggacat ttcagttaaa aatttgatta
     2341 ttcatatcgc aattgctgta tgtcgtgtaa aagataattg ttatgtacct gcaacagatt
     2401 tggaggatat tgaatttagt atgccggaat taagggcggc tcaaggtatt ataaaagaaa
     2461 tagatctttc agaaggaatt cgtttcccgg aaagtgagac tgcctatctg ctgctacacc
     2521 ttagttcgaa aaacagaaaa agtgacttta ataattaccg agaatatatc atcgtggata
     2581 agatgttaga aaagattaaa gagctgtacg gttatgattt taagcaagac cagaaaatga
     2641 tttccaatat cgctttgcat ttaaagccag caattaacag aattaaattt aatatgaata
     2701 tacaaaaccc gtatttaaaa aatctaaaag ctaattatcc actagctttt gaattagggt
     2761 tggttgctaa agaagtcctt gagcaggagt taaaaacaaa tgtagacgaa gcggaagtag
     2821 gatatttggc tattcacttt ttgtatggct tagataagga aatagggtct gagaagcaaa
     2881 aagtattgat tgtttgtgct tctggtttag ggacgtcgca acttttggaa tctaaagtac
     2941 gaaaagagtt tgagaatacg cttgaaatag tcggcgtgta ctcatttaaa gaatatgagc
     3001 agagtggaac ggcatgtgac tttgttatct ctacagtacc actgcgaatg aagttacatc
     3061 catttattca agtatcgcca tttttgacaa aggcggatat tcgtaatatc actgcgttaa
     3121 tgaagcaaga tgagacgaag aaccaatttg aagtggacaa ggtttttaag gaatcgttat
     3181 tcttaattag tgataaaaag gacaaagagc aagttctggt agatttagcg agtcttttgc
     3241 tggaaaataa tattgttggc gaggactatt taccatcact ttttgagcgc gaagaaattg
     3301 tgccgactta tttaggtaat ggacttgcgg caccacaccc aattgaagca aacgtccaag
     3361 aaacagctat tggagtatgt atttttactg gcggtggggt aaagtggaat gaggaagatc
     3421 aggcacaagt gattttcatg ttagcggtaa aaaacaagca acaacagcag cttgcgacgg
     3481 tgtatgagct tattagcaat ttagtagaaa gtccaaaagc aatgggagag ctaaaacgtg
     3541 tgacaagttt tgaagaattt atgcgtgtgt tacaaacgat ataaccaaaa ggttcgttag
     3601 actttcttag agagaaaagt taacgggcct ttttttattt ccgcatgtaa aatacagatg
     3661 cggaaaaaga ctagatttat ttaacaaaaa gaaagcgcta cacttattgt aatatcaaag
     3721 gaggtataaa aaattgaaaa agttcatcga gaaattaagt tggttatcgc agaagcttgg
     3781 aaatcaaatt catttaaagt ctatgcgtga tgcatttgct actattttac cttttattat
     3841 gttagcagga ttcatggttt taattaataa cgtgattatt aagccggatg gttttatgtc
     3901 ggcgatcatc agttccgaaa cacttacgac ttggcagggg ctaggtaaca gtattgtgaa
     3961 cgggacttta ggaattatta ctattttgat tggagcttca gttgcttact ttttagcgca
     4021 aaaccggaag tttgaaaatc cgtttgcacc agcgttaatg accattgcac tgattgttat
     4081 ttttatccca gctgtaacag aaattgtgcc gattggtgca gagaaatctg tggaagttgc
     4141 tggagtatta ccaatagcct tgatgggttc ggcgggcatg ttcgttggga ttgtaacggc
     4201 gcttcttgca acagaagtat tcattcgtct ttctaagagt gagaaaatga aaatccatat
     4261 ttctggggat agcgtacctc cagccgtaat taaatcattc aatgtgctta ttccgacaat
     4321 gttaacaata cttatttttg cgtttatttc attcttagta gtgacattat tcagcttgaa
     4381 tttgtattct ttaattagcg caattattca agaaccatta acattcttag ttacaagtgt
     4441 tccagggttc ctaacgttaa tgacgatttc acaaatgctt tattctatcg gtattgctgg
     4501 aagtgggatt ttagggccga ttatggaccc agttcttttg gcaaatatgc aagaaaatat
     4561 gacagcattt gcgaatcaca cagagattcc gcatattatt aatactactt tccgtgatgt
     4621 ttttggcgtt atgggcggcg gcggaaatac tattgcgctg ttaatagcaa tttttatttg
     4681 gtcaaaacga aaagattatc gcgaaatagc tactttatcg gcagctcctg gtctatttaa
     4741 tatcaatgaa ccggtagtat ttggccttcc gattgtttat aacttgagtt tgatgattcc
     4801 gttcattatt tcaacaccgc tttgcttatg tttagcctac ttcgcgacaa agctgcatat
     4861 gatttcagaa gtagtcgtaa tggttccgtg gacgacacca gttgttgctt ccggcttcct
     4921 tgcaacaggt ggggactggc gtgctgcagt attccaaatt ttcttgattg gcgtctgcgt
     4981 acttctttac ctaccattct taaaagccaa tgacagaatt aaagcctaat tggagggatt
     5041 tttatgaaaa atattatgtt gatgtgtaat gcgggaatgt ctacaagcgt tttagtgagg
     5101 aaaatggaac gcgttgtaga agaacgtaat ttagaactga ctatctgggc tatttcagaa
     5161 acggatttcg aaaaaaattg gcgtaaagct gatgcgattt tacttggacc gcaagtgaat
     5221 tatatgaaag ataaggtcat agacacagtt ggtgataatg tatcggtggc agttattgat
     5281 atcgttgatt atggtcgaat gaatggtgaa aaagtattag atttagcaat tagtttattg
     5341 tgacattctt agttttttag caaggaggag aaagaatatg gctgtttatt tggataagga
     5401 gaaaccagtt tcagaacgtg tagaagactt actttccaag atgaccttag cagaaaaatg
     5461 tggtcaacta aaccaaagaa tgtatggctg ggaagctttt tcaagagatg gcgaaacgtt
     5521 tcatatcacg gaaaaattta aagaggaagt aactagattt gaaggtatag gcgctttata
     5581 cggtctgttc cgcgctgatc catggtccaa aatgaataag gacacgggtg taagtcggaa
     5641 aaatgctggc aaagtagcta ataaaattca acgctatgtg atagaaaata cgcgcctagg
     5701 gattcctgta ctattagctg aggaagttcc gcacggtcac caagcgttag atagcgaatc
     5761 ttatccggta aatttagctc gtgctgcttc ttttaatcca gagttgcaaa aacaggtcgc
     5821 aagtgcgatt acagaagaaa tttccgaaaa gggagttcat ctagcacttg cttcagcatt
     5881 agacatactt cgagacccac gttggggacg cgctgaagag tgttacggtg aagatccata
     5941 ccttgcagcg gaattaacag cggcaattac agaaggcttt caagcgagtg ggaagattgc
     6001 tgttatttta aaacattttg cggcacaagg cgagccgatt ggcgggcata attctggacc
     6061 agtttctatt ggcgtaaggg aacttagaga aattttcttg gaaccaatgc gcgcgggaat
     6121 tagaagtggt gctcttggcg tcatggcagc ttacaacgag attgacgggg tgccatgcca
     6181 cgcgaacaaa gagcttttaa caactatttt gcgagaagaa atgggattct ccgggattgt
     6241 tatggcagat gggtgtgccc ttgatagatt attaaaacta aatcctgatc caaaaaaagc
     6301 cgcaaaaatg gctcttgaag ccggtgtgga tttgagtttg tgggatgaag tgtttccatt
     6361 tcttgaagaa agcgtggaaa aaggcattct tgatgaaaag gtcgttgatg atgctgtgag
     6421 gcgagtgctt caagtgaaat tccaattagg gctatttgaa caaccgtttg tagaggaaga
     6481 aattcaagca ccgaagtctg attggaaaca actaaattta caagccgcta gagagggtat
     6541 ttgtcttttg aaaaacgact tcgaaacatt acctctagta ggcgaacgga aaaaaatagc
     6601 tgttgttggt cctagcatag atgcgcttta taatcagttg ggagattata cagctccgca
     6661 aaatgaatca gaatgtgtca ctgtgttaga agggataaaa aaactgcttc ctaaaaattg
     6721 ggaagtcgtt tctgaaaaag gtactgaaat tcgtgaagag cttccggatg gcattcaaag
     6781 agcagaagtg gttgctaaag aggcagacgc cattgttatg gtgctcggtg gttcaagtgc
     6841 gcggaatttt gacatggaat ttttaaataa tggcgcggta agctctaagg gcccgaacat
     6901 ggatgccggt gaaaatgtgg atgttgctga tatcacgctt ccacaaccgc aattagattt
     6961 gttttacgca atgaagcgta ctggaaagcc tgtaattgtc gtaatgattc aaggtagacc
     7021 aatcgctatc ccagaaatta gttcgacagc agatgcgatt ctcacagctt ggtatccagg
     7081 aagtgttggt ggaacggcga ttgctgaggt tcttttcggt cattacaatc cttcaggtaa
     7141 attaccagtc agcataccaa gatcctccgg gcagattcct atttactaca atcaaaaggc
     7201 agtggagtat aaagaagact actttgattt aactggtaag ccgctctatc catttggcta
     7261 tggtttaagt tatagcgctt ttgaatatca agatttacag ataaaacaag aatctataaa
     7321 aatagcagaa ctccttggcg ggcaatct
//
LOCUS       DASEAA010000130         7095 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.130, whole genome shotgun sequence.
ACCESSION   DASEAA010000130 DASEAA010000000
VERSION     DASEAA010000130.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7095)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7095)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7095
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.130"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            137..2650
                     /gene="secA"
                     /locus_tag="U0342_002200"
     CDS             137..2650
                     /gene="secA"
                     /locus_tag="U0342_002200"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466033.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="preprotein translocase subunit SecA"
                     /protein_id="HEM2423543.1"
                     /translation="MAGLLKKIFESGKKDVKYLERKADEIIALADETAALSDDALREK
                     TVEFKERVQKGETLDDLLVEAFAVAREGAKRALGLYPFKVQLMGGIVLHEGNIAEMKT
                     GEGKTLTATLPVYLNALSGEGVHVVTVNEYLAHRDAEEMGVLYNFLGLSVGLNLNALS
                     STEKREAYACDITYSTNNELGFDYLRDNMVVYKEEMVQRPLAFAVIDEVDSILVDEAR
                     TPLIISGEAEKSTILYVRANTFVRTLTEEEDYTVDIKTKSVQLTEDGMTKGENYFDVE
                     NLFDLENTVILHHIAQALKANYTMSLDVDYVVQDDEVLIVDQFTGRIMKGRRFSEGLH
                     QALEAKEGVTIQNESKTMATITFQNYFRMYKKLAGMTGTAKTEEEEFRDIYNMRVIEI
                     PTNKVIIRDDRPDLIYTTIEAKFNAVVEDIAERHAKGQPVLVGTVAIETSELISSKLK
                     RKGIKHDVLNAKQHEREADIIKHAGERGAVVIATNMAGRGTDIKLGEGTIEAGGLAVI
                     GTERHESRRIDNQLRGRSGRQGDPGVTQFYLSMEDELMRRFGSDNMKSMMERFGMAED
                     AIQSKMVSRAVESAQRRVEGNNFDSRKQVLQYDDVLRQQREVIYKQRYEVINAENSLR
                     EIIEQMIQRTVNFIVSSNASSHEPEEAWNLQGIIDYVDANLLPEGTITLEDLQNRTSE
                     DIQNLILDKIKAAYDEKETLLPPEEFNEFEKVVLLRVVDTKWVDHIDAMDHLRDGIHL
                     RAYGQIDPLREYQSEGFEMFEAMVSSIDEDVARYIMKAEIRQNLEREQVAKGEAINPA
                     EGKPEAKRQPIRKDQHIGRNDPCPCGSGKKYKNCHGKEA"
     gene            2735..3836
                     /gene="prfB"
                     /locus_tag="U0342_002201"
     CDS             join(2735..2806,2808..3836)
                     /gene="prfB"
                     /locus_tag="U0342_002201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010959056.1"
                     /ribosomal_slippage
                     /note="programmed frameshift; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 2"
                     /protein_id="HEM2423544.1"
                     /translation="MELAEIRNELEKTAQQIKDFRGSLDLDSMEVRIAELEDQMLDPN
                     FWNDQQAAQKVINESNGYKETYQAFHALEEEQESMEISLELLKEEADEDLQEELEKDI
                     KAYMATISEFELKLMLSDPYDKNNAILELHPGAGGTESQDWGSMLLRMYQRWSEKKGF
                     KVEMLDYQAGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFVS
                     VDVMPELDDDIEIEVRTEDLKIDTYRATGAGGQHINTTDSAVRMTHIPSGIVVTCQSE
                     RSQLKNREQAMKMLKTKLYQKEQEEKERELAEIRGEQKEIGWGSQIRSYVFHPYSMVK
                     DHRTNYETGNIQAVMDGDLDEFINAYLRSRIG"
     gene            3842..4705
                     /locus_tag="U0342_002202"
     CDS             3842..4705
                     /locus_tag="U0342_002202"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2423545.1"
                     /translation="MANKRKKQPLSPVVSKLIEYIYVIIGAALIALAFNVLLLPNHVA
                     SGGVSGISTIINYLTGWNPAFIQWAFNIPLFLAGLFFLGYQFGLKTFVGTMLLPFFVY
                     LTQGLEPWTHEPLVAALFGGVLVGMGLGIVFRGKASTGGTDVAAQILHKYSHLTLGIC
                     VALIDGFVVISAMFVFDIESGLYALVGLFATSKTIDLVQVGLNQSKTVFIISENQEAI
                     RQAILFKIDRGITRLSAKGGYTEDDKQILLCVIAQSEFSRLKEVIKEIDPEAFVVVMS
                     ASEVMGEGFTS"
     gene            5212..5898
                     /gene="ftsE"
                     /locus_tag="U0342_002203"
     CDS             5212..5898
                     /gene="ftsE"
                     /locus_tag="U0342_002203"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division ATP-binding protein FtsE"
                     /protein_id="HEM2423546.1"
                     /translation="MILMEDVYKKYPNGITAANGLNINIGEGEFVYVVGPSGAGKSTF
                     IKMIYREERATKGKIIVDKFDLINMKNREIPYLRRNVGVVFQDYKLLQSKTVYENIAY
                     AMEVVETEPSVIKERVMEVLDLVNLKHKVRMLPDELSGGEQQRISIARSIANMPKVLI
                     ADEPTGNLDPDTSWEIMNILEEISNRGTTIVMATHNKEIVNTLKHRVVAIENGRIVRD
                     EQQGEYGYEI"
     gene            5888..6772
                     /locus_tag="U0342_002204"
     CDS             5888..6772
                     /locus_tag="U0342_002204"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466029.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423547.1"
                     /translation="MKFRTVGRHIRESFKSLYRNGWMTFAAASAVTVTLILVSVFFAI
                     LINMNKLATDVENNVQINVHISLSADKKQQQELEKNIEKIDGVDSVSFSSKDDELKKL
                     VGAYGKNFELFKQDNPLYDVFVVEAKEPTQTKTIAKKVEKLQYVDNVEYGEKTVDKLF
                     DTLKWGRYAGIILSIGLLLTAMFLISNTIKIAIFSRRREIEIMKLVGATNWFIRWPFV
                     LEGAWLGLIGSIVPVVLTFIGYVNIYNLVNPKLVTSSLSLLPPTPFAYQISGLIIAIG
                     VLIGIWGSVISIRRFLKV"
     gene            6848..>7095
                     /locus_tag="U0342_002205"
     CDS             6848..>7095
                     /locus_tag="U0342_002205"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466028.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423548.1"
                     /translation="MKKNTFIAISLAAVISLTPAFTTNVFADVNTDIQNQDKKINDIK
                     SKKTDLQSDLSGLVADLEKAQEKAKSLQGEFDKTGKEL"
BASE COUNT         2447 a         1131 c         1512 g         2005 t
ORIGIN      
        1 taaaaagaga taaccagttg tatattttag ttaataagtg atagaattag tttgtatatt
       61 taagtgaaga taattcctga aagttattat agatgaaact gcgcgatgac agcgaaaaca
      121 gtagaggaga atttaaatgg ctggactatt gaaaaagatt tttgaatcag gaaaaaaaga
      181 tgttaaatat ttggagagaa aagcagatga gattattgct ttagcggatg aaactgctgc
      241 tctttcggat gatgctctac gtgaaaaaac agtagagttt aaagagcgtg ttcaaaaagg
      301 tgaaacactg gatgacttat tggtagaagc atttgctgtt gccagagaag gtgcgaagcg
      361 tgcgctagga ttgtatccat ttaaagttca attaatgggt gggattgttc tccacgaagg
      421 taacattgca gagatgaaaa ctggtgaagg taaaacgtta acagcgacac taccagttta
      481 tttaaacgcg ctttctggtg aaggtgtgca tgttgttaca gtcaacgaat acttagctca
      541 tcgtgatgct gaagaaatgg gcgttttata caatttcctt ggactttctg tagggctaaa
      601 cctaaatgct ttatcgagca cagaaaaacg agaagcttat gcatgtgata ttacgtatag
      661 cacaaataat gaattaggat ttgactattt acgtgataat atggttgttt acaaagaaga
      721 aatggtacaa cgtccgctag cttttgctgt tatcgatgaa gtcgattcca ttttggtcga
      781 tgaagcgaga acaccattaa ttatttctgg tgaagcagaa aaatcgacta ttctatatgt
      841 gcgtgcaaat acttttgtcc gtactcttac agaagaggaa gattatacag ttgatattaa
      901 aacaaaatct gttcaattaa ccgaagatgg tatgacaaaa ggagaaaact actttgatgt
      961 agagaacctt tttgatttgg aaaataccgt aattttacat catattgctc aagcgttaaa
     1021 agctaactat acaatgagcc tagatgtcga ttatgttgtt caagatgatg aagtattaat
     1081 cgttgaccaa ttcactggtc gtattatgaa aggtcgtcgt ttcagtgaag gtttacacca
     1141 agcgcttgaa gcaaaagaag gcgtaactat tcaaaacgaa tccaaaacaa tggcgacaat
     1201 tacattccaa aactatttcc gtatgtataa aaaacttgca gggatgacgg gtactgcaaa
     1261 aacggaagaa gaagagttcc gcgatattta taatatgcgc gttattgaaa tcccaactaa
     1321 taaagtaatt attcgtgatg accgtcctga tttaatttac acaacgattg aagcgaaatt
     1381 taatgcagtg gtagaagata tcgccgaacg tcatgcaaaa ggacaacccg tattagtcgg
     1441 tacagttgcg attgaaacat ccgaacttat ttctagcaaa ttaaaacgca aaggaattaa
     1501 gcatgatgta ctaaacgcga agcaacatga acgtgaagct gatatcatta aacatgcagg
     1561 tgaacgtggc gcggtagtaa tcgcaaccaa catggctggt cgtggtacgg atatcaaact
     1621 tggtgagggt acgattgaag ctggaggttt agcagttatt ggtacagaac gtcatgaatc
     1681 acgtcgtata gataaccaat tacgtggtcg ttctggacgt caaggagacc ctggtgtgac
     1741 tcaattttat ctttctatgg aagatgaatt gatgcgtcgt ttcggttcag acaatatgaa
     1801 atcaatgatg gaacgctttg gtatggcaga agatgctatc caaagtaaaa tggttagtcg
     1861 tgcagttgaa tccgcacaaa gacgtgtgga aggaaataac tttgattccc ggaaacaagt
     1921 tttacaatat gatgatgtac ttcgccaaca acgggaagtt atctataaac agcgttatga
     1981 agtaattaat gcagaaaaca gtttgcgtga aattattgaa caaatgattc aacgaacggt
     2041 caactttatc gtttctagta atgcatcaag ccatgaacct gaagaagctt ggaatctaca
     2101 aggaattatc gactatgtgg atgcgaactt acttcctgaa ggcactatca cactagaaga
     2161 tctacaaaat agaacaagcg aagatattca aaatttaatt ttagataaaa tcaaagcggc
     2221 ttacgacgaa aaagaaacac tactacctcc agaagaattt aacgaattcg aaaaagtagt
     2281 attgcttcgt gttgttgata ctaaatgggt tgatcatatt gatgccatgg atcatttacg
     2341 tgacggtatt catttacgtg catacggtca aattgatccg cttcgtgagt atcaatcaga
     2401 aggctttgaa atgtttgaag caatggtatc gtccatcgat gaagatgttg ctcgttatat
     2461 tatgaaagca gaaattcgcc aaaaccttga acgtgagcaa gttgccaaag gggaagcaat
     2521 taatcctgct gaaggtaaac cagaagcgaa acgccaacca atccgcaaag atcaacacat
     2581 tggacgtaat gatccatgcc catgtggtag cggcaaaaaa tataaaaatt gtcacggtaa
     2641 agaagcatag attgaaacaa tttaaaaagc gcctgaaaga cggcgctttt tgctatgaaa
     2701 gtttataagt aaatttaaaa aaggtggaat tagaatggaa ttagcagaaa ttcgtaatga
     2761 attagaaaaa acagcgcagc aaatcaaaga ctttaggggg tctctttgac ttagacagta
     2821 tggaagttcg aatcgctgag ctagaagacc aaatgttaga tccgaatttt tggaatgacc
     2881 aacaagcggc acagaaagta attaatgagt caaacggata taaagaaaca taccaagctt
     2941 ttcatgcgct agaagaagaa caagaaagta tggaaattag tctagaatta ttaaaagaag
     3001 aagcagatga agatttacaa gaagaattag aaaaagatat taaagcttac atggcgacta
     3061 ttagtgagtt tgaattaaaa ctgatgctaa gtgatccata tgacaaaaat aatgctattt
     3121 tagaacttca tccaggtgct ggtggtacag aatcacaaga ctggggttcg atgttacttc
     3181 gtatgtatca acgttggtct gagaagaaag gctttaaagt agagatgctt gattaccaag
     3241 caggggacga agctggaata aaaagtgtca cgttacttat aaaaggccac aatgcttacg
     3301 gctatttaaa agcggaaaaa ggggtgcatc gtctagtgcg tatttcgcca tttgactcat
     3361 ccggcagacg tcatacatca ttcgtttccg tggatgtaat gcctgaatta gatgatgata
     3421 ttgaaattga agtacgtaca gaagacttga aaattgatac gtaccgcgca actggtgcag
     3481 gtggacaaca tatcaataca actgactcag ctgttaggat gacacatatt ccatccggca
     3541 tcgttgtaac gtgccaatct gagcgttctc agcttaaaaa ccgtgaacag gcaatgaaaa
     3601 tgttaaaaac aaaattatac caaaaagaac aagaggaaaa agaacgcgag ctagcagaaa
     3661 ttcgaggaga acaaaaagaa attggttggg gaagccaaat tcgttcctat gttttccacc
     3721 cttactccat ggtgaaagat catcgcacaa attacgaaac cggtaatatt caagcggtaa
     3781 tggatggaga cttagatgaa tttatcaatg catatttgcg ttctaggatt ggataaaaga
     3841 gatggcaaat aaaagaaaga aacaaccgtt atccccagtt gtttctaaat taattgagta
     3901 tatttatgtc attataggtg cagctctcat cgcacttgct tttaatgttt tactactccc
     3961 gaatcacgtt gcttctggcg gagtgagcgg gataagtacg atcattaact atttaacagg
     4021 ttggaatcct gcttttattc agtgggcatt taatattcct ttatttctag cgggattatt
     4081 ctttttaggc tatcaattcg ggttgaaaac ttttgtcggc acgatgcttt taccgttctt
     4141 tgtgtattta acgcaaggct tggagccatg gacgcatgaa cctcttgtag ctgctttgtt
     4201 tggcggcgta cttgtaggaa tgggacttgg aatcgttttt cgaggcaaag catctactgg
     4261 tggcacggat gtcgctgcac aaattttgca taagtattct catctaacat tgggaatttg
     4321 tgtggctttg attgatggat tcgttgttat ttcggcaatg tttgtttttg acattgaatc
     4381 agggctgtac gcacttgtcg gattattcgc tacaagtaaa acaattgatt tggtacaagt
     4441 tggtttaaat caatccaaaa cagtctttat tatttctgaa aatcaagaag caatccgcca
     4501 agcaattctg tttaaaattg accgaggcat tactcggctc tccgcaaaag gtggatatac
     4561 agaggatgac aagcaaattt tattatgtgt gattgcgcaa agtgaatttt caaggttaaa
     4621 agaagttata aaagaaatag acccagaggc ttttgtggtt gtaatgagcg caagtgaagt
     4681 aatgggtgaa ggttttactt cataaaaaag taccatttcc taactttttt agtcaggaaa
     4741 tggtactttt tttaagtttt caggcccgct ttttgacaat ttgatgacag gcgagtttag
     4801 cctagttgca gatctcgagc tattttaact agattggtct attccgctag ctagaactgt
     4861 aatgattttt aatgtacctg taatgttatt tagggtaaaa acaagttaca atgttagcag
     4921 tagaaaagac caatgtgggt tcttttttat tttgtcttaa taacactaga ccgcagacat
     4981 atatataaat tggaaatcaa cgtaataatc gtatttccta ttacaataat cgagatattg
     5041 tcacaccctg aaatataatt gtaatgcaat taacctatag atgaaaaact gtcatggtat
     5101 aattaagctt atgttgtgag tttaaattcg tacctacaaa caactcatct tcatggttac
     5161 catgcattac ctaaaatgta actcagtaga aaggcatagt aaggtgataa aatgatatta
     5221 atggaagatg tttataagaa ataccctaac ggcataacag ctgccaatgg actcaacatt
     5281 aacattggcg aaggggaatt tgtttatgta gtaggcccga gtggtgctgg taaatctacc
     5341 ttcatcaaaa tgatttacag agaagaacga gcgacaaaag gcaaaatcat cgtagacaaa
     5401 tttgatttga ttaatatgaa aaatcgtgaa atcccatatc ttcgtcgtaa cgtaggcgtg
     5461 gtattccaag attacaaatt acttcaaagc aaaacagttt atgaaaacat tgcttatgcg
     5521 atggaagtgg ttgaaacaga gccatccgta attaaagaac gtgttatgga agtactagat
     5581 ttagtcaacc ttaagcataa agtaagaatg ttgccggatg aactttccgg tggtgagcaa
     5641 cagcggatat ccattgcccg ctccattgca aatatgccta aagtattaat agcagatgaa
     5701 ccgaccggta acctagatcc tgatacttca tgggaaatca tgaatatcct tgaagaaata
     5761 agcaatcgcg gaacaaccat cgtgatggca acccacaaca aagaaattgt taacacattg
     5821 aaacaccggg tagtcgctat cgagaatgga agaattgttc gagatgagca gcaaggagaa
     5881 tatggctatg aaatttagga ctgtaggaag acatataaga gaaagtttta agagccttta
     5941 ccggaatggt tggatgacct ttgcagcagc gagtgcagta acagtaacac ttatcttagt
     6001 cagcgtgttt tttgcaatat tgatcaacat gaacaagctt gcaacggatg tagaaaacaa
     6061 tgtacaaatt aacgtacata tttctctaag cgcagacaag aaacagcagc aagaacttga
     6121 gaaaaacatt gagaagattg atggagttga tagtgtcagc ttttcttcta aggatgacga
     6181 attgaagaaa ttagttggtg cgtacggcaa aaacttcgaa ttgtttaaac aagataatcc
     6241 actatacgat gtgtttgttg tagaggctaa agagcccaca caaacaaaga ctattgcaaa
     6301 aaaagtagaa aaattacagt acgtagataa tgtagaatat ggtgagaaaa cagtcgataa
     6361 attgtttgat accttgaaat ggggacgata tgctggtatt atactaagca ttgggttgtt
     6421 actaacagcg atgttcttaa tatcaaacac aatcaagatt gcaattttct cccgtcgaag
     6481 agaaatagaa ataatgaaat tagtaggagc gaccaactgg ttcatacgct ggcctttcgt
     6541 tttagaaggt gcttggctag gattaattgg ctcgattgta ccagttgtgt taacatttat
     6601 aggctatgtt aatatttaca acttggtgaa tccgaagtta gtgacaagct cactatcact
     6661 tctgcctcca acaccattcg cttatcaaat tagtggcttg attattgcaa tcggcgtact
     6721 aatcgggatt tggggaagcg taatatctat ccgcagattc ttgaaagtct aactcagaaa
     6781 attacttaaa tcgaaataaa aataatttaa aagaaaaagc tagggagctt tttaggaggt
     6841 aaactttttg aaaaagaata cgtttattgc gatttcactc gcagcagtta tcagtttgac
     6901 gccagctttt acgactaatg ttttcgcgga cgtgaataca gacattcaaa accaagataa
     6961 aaaaattaac gacatcaagt ctaaaaaaac agatttacaa tcagatcttt ctggtttagt
     7021 agcagacctt gagaaagctc aagaaaaagc taaatctcta caaggagaat ttgataaaac
     7081 aggcaaagaa ctaaa
//
LOCUS       DASEAA010000131         7073 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.131, whole genome shotgun sequence.
ACCESSION   DASEAA010000131 DASEAA010000000
VERSION     DASEAA010000131.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7073
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.131"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..562)
                     /locus_tag="U0342_002206"
     CDS             complement(<1..562)
                     /locus_tag="U0342_002206"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423549.1"
                     /translation="MKVDSLSKKIDGELLLDKITFEVKPGEIIGIVGRNGVGKTTLFR
                     TIMGFYIPDEGDVYLDEALSKNPQLKQKLFMLQDSLNCWDGYKIPTIKKFYQKTYPLF
                     DGAKFDNLLNQVNLATDVKFQNYSKGMKGLFGLVLALSIGAEFILLDEPMEGLDIIAQ
                     KKIMGILLEEVEKRKLGIIISSHRLAD"
     gene            complement(552..947)
                     /locus_tag="U0342_002207"
     CDS             complement(552..947)
                     /locus_tag="U0342_002207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2423550.1"
                     /translation="MFTINTKSQLPIYEQIVQKIKEQVVKGILQEGEKILSIREFASR
                     IGVNPNTVSKAYQELERQEVIVTVKGKGTFIANQQDKVSSPKKLAETKIKLKETILDL
                     VYLGINVEEIHRLSDEYSQDIIGGDMVEG"
     gene            complement(1039..1521)
                     /locus_tag="U0342_002208"
     CDS             complement(1039..1521)
                     /locus_tag="U0342_002208"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylated-DNA--[protein]-cysteine
                     S-methyltransferase"
                     /protein_id="HEM2423551.1"
                     /translation="MTDLYYDTLHFSDTELYFAATKTGLFYVGTKAEKIQSAKRSPEK
                     MNMYKEELVAYLNGELTYFTVPMDLSATPLQLEVFHALEAIPYGETRTYTEIAAQINR
                     PKAVRAVGTAIGRNPLLFIIPCHRVIGKNGKLTGYSGGIGMKESLLKLEKAKINQFSF
                     "
     gene            1667..2227
                     /locus_tag="U0342_002209"
     CDS             1667..2227
                     /locus_tag="U0342_002209"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methylphosphotriester-DNA--protein-cysteine
                     methyltransferase family protein"
                     /protein_id="HEM2423552.1"
                     /translation="MSDYYLTKKRWQAISTNDKTADGTFFYGVTSTKIFCYPSCKSRL
                     PKKENIVIFHSAEEAFSHGYRACKRCKSGGTALPDTEWITNIEMYIKENFAKPLTLQI
                     IADDCHGSPYHLHRTFKRITMITPITYLENVRISYAKMQLTSTNQSIETIGKMAGFPN
                     PSHFSTTFKRHTGLSPNQFRKTIIKN"
     gene            2249..3118
                     /locus_tag="U0342_002210"
     CDS             2249..3118
                     /locus_tag="U0342_002210"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RluA family pseudouridine synthase"
                     /protein_id="HEM2423553.1"
                     /translation="MTHVTLPILEDWEGLSLTTILQEKFHLGKKARHEIRMSQNVLLN
                     NKPLDDWNTPLFVGASLSLPVFLHDKIPVYEYDLEIIYEDDFLLVVNKPVDMKTHPND
                     SYETDTCANAVQYYLEKTGQDANALAVHRLDQTTSGLVLFAKNKLAIAGLSWQMENRA
                     IHRTYLAAVDGTWGLVMQTINKPIGEDRHHGSRRQISPYGQPAVTHVKVLENDNEKNT
                     SLVECQIETGRTHQIRVHLSGIGHPIIGDTLYGGSPRANRIMLHAEKLHLNHPFKGKE
                     MNFSAPAGDDWVF"
     gene            complement(3131..3523)
                     /locus_tag="U0342_002211"
     CDS             complement(3131..3523)
                     /locus_tag="U0342_002211"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2423554.1"
                     /translation="MLHHVEIYVADLEESRLFWSGLLEELSYELYQTWNEGFSYKFAD
                     TYLVFVQTEEPFVAEGYHRKRVGLNHLAFHGGTKERVDDFRAKLKAKGTKLLYEERYP
                     FAGGENHYAVFFEDPNGIKVEICTEVTT"
     gene            complement(3525..4181)
                     /locus_tag="U0342_002212"
     CDS             complement(3525..4181)
                     /locus_tag="U0342_002212"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA alkylation repair protein"
                     /protein_id="HEM2423555.1"
                     /translation="MTDIQMVFRANRSLIDAPPMEAYMKNQFTFLGIRAGERKKLVAE
                     YLKENGAPQDLLGFTIALFAEEEREFQYVAIDLLSRYGKKQPSEAIKVYEQLIVTKSW
                     WDTVDGLAGTVVSNHFKLYPELIPTYNEAWINGDNIWLARTAILFQLKYKEETDVDLL
                     FSNCEKWLDSKEFFIQKAIGWALRQYAKVDSGAVRQFVNSHSLAPLSRREALKHIGEA
                     "
     gene            complement(4178..5062)
                     /locus_tag="U0342_002213"
     CDS             complement(4178..5062)
                     /locus_tag="U0342_002213"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2423556.1"
                     /translation="MTKTLQDRMILPGNETIPYIGLGVFQVTEQEFIAGAVEKAIEVG
                     YRLFDTAAVYNNEAIVGQAIASSAVSREELFISSKVWNGDLGFDETLFAFERTLRNLK
                     LDYLDLYLIHWPVAGKYRDSWRAMERLHDEKLIKSIGVANFKQHHLSDLLVAANEKPV
                     LNQVETHPLLPQNDLRKYLAEQNIAHAAWSPLAKGILMQNPVITEIAKKHQASVDQVI
                     LQWHLNRNTIIFPKSITSSRIEENSRLSYFQLDAIDMEKIDRLETGKRVGPDPDDLEY
                     FLSSIERERAYLSGENAE"
     gene            5449..6069
                     /locus_tag="U0342_002214"
     CDS             5449..6069
                     /locus_tag="U0342_002214"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF47 domain-containing protein"
                     /protein_id="HEM2423557.1"
                     /translation="MAFKNKKDRFASLLHDIAVNLHEGANFFATYNINSVEDLHTFSN
                     KIKEYETAGDSMVHKMIMELNDAFITPIEREDMLELTNRLDDVMDALDETAFSLEICQ
                     ITHYDEYMTKFIQAIQASTVEIEKAVDLVFDKKLKDVRKLAIQIKDYESQCDDVYRES
                     LIQLFQNEKDPIKLIRLREVYEKLEDIADSCQSVANTLESIVMKNA"
     gene            6083..>7073
                     /locus_tag="U0342_002215"
     CDS             6083..>7073
                     /locus_tag="U0342_002215"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="inorganic phosphate transporter"
                     /protein_id="HEM2423558.1"
                     /translation="MEGMFLITLVIVLAALAFDLINGFHDTANAIATSVSTKALKPRH
                     AIILAAVMNFVGAISFTGVAKTITKDIVNPFDLDHGELVILAALLSAIAWNLITWYFG
                     IPSSSSHALIGSIAGAAIASAGFAAIEYSGFTKIIVGLLVSPVLAFVVGYTIYSLFKV
                     FLKNLNLATTNRRFRMIQVGTAALQSYTHGTNDAQKSMGIITMALIASGFQTTDDVQL
                     WVQVSCAIAMAIGTSIGGWKIIKTVGGKIMKIKPVNGVAADLSSVIIIFGATFIHLPV
                     STTHVISSSILGVGTAHRVKGVKWDTAQRMIITWVITLPISATIAALIFYVLRF"
BASE COUNT         2162 a         1465 c         1169 g         2277 t
ORIGIN      
        1 aatcagctaa acgatgggaa gaaataataa tgcctaattt ccgcttctcc acttcttcta
       61 ataatatgcc cataattttc ttttgagcaa ttatatcgag accttccatt ggttcatcga
      121 gcaaaataaa ttcagctccg atagataggg caagaacgag cccaaaaaga cctttcattc
      181 cttttgaata attttgaaat tttacatctg tagctaggtt aacttgattg agtaagttat
      241 caaatttagc tccgtcgaat aatggataag ttttttgata gaattttttt atcgtcggaa
      301 tcttataacc atcccaacaa tttaaactat cttgaagcat gaataatttt tgctttaatt
      361 gagggttttt gcttaatgcc tcatctaagt acacatctcc ctcatcagga atataaaaac
      421 ccataatagt tcgaaaaaga gttgttttac ctacgccatt tcgtccgact ataccaataa
      481 tttctcctgg ctttacttca aatgttattt tatccaataa gagttccccg tcaatttttt
      541 tgctaagtga atcaaccttc aaccatgtca cctccaatga tgtcttgact atattcgtct
      601 gataatctat gtatttcttc aacgttaatt ccaaggtaaa ctaaatcgag aatcgtttct
      661 tttaatttaa tttttgtttc tgctagtttt tttggtgaac ttactttatc ttgttggttc
      721 gctatgaagg tcccttttcc ttttaccgtg acaattactt cttgtcgttc taattcttgg
      781 tacgctttac tcacagtgtt tgggttcact ccgattctac ttgcaaattc acgtatagat
      841 aatatctttt ctccttcttg aagtatccct ttgacaactt gttctttaat tttttggacg
      901 atctgttcat aaatcggtag ttgacttttt gtgttaatcg taaacatctc tccccctgct
      961 ttcatgaatt ctactataga gaactaattg tactagttac tatagtacag tagataaaaa
     1021 aataaatcaa ttctcttttt aaaaagaaaa ttgatttatt tttgcttttt caagttttaa
     1081 gagtgattct ttcatcccta tccccccgct ataacctgtt aatttgccat ttttaccaat
     1141 tactctgtgg catggaataa tgaaaagtag tgggtttctt ccgattgccg ttccaactgc
     1201 gcgcacggct ttggggcgat ttatctgtgc tgcaatttct gtatacgttc tagtttctcc
     1261 ataaggaata gcttccaatg cgtgaaatac ttcaagttgg agaggagtag cggacaaatc
     1321 cattggtaca gtaaaatacg taagttctcc gttcaaataa gcgaccaatt cttctttata
     1381 catgttcatt ttttctgggc ttcgcttggc tgattgaatc ttttctgcct ttgttccaac
     1441 gtaaaatagc ccagttttcg tcgctgcgaa ataaagctct gtgtctgaaa aatgaagcgt
     1501 atcataatat aaatctgtca tttccttcac ctctttctaa tgttaattat acgctaaatt
     1561 gaataacatt tctaaccagt ttcactataa gagcaagatt agaaaagttt tcctcgcaat
     1621 ttaccttcat aacgtttatg attaataaga agttgaggtg ataacattgt cggattatta
     1681 cttaaccaaa aaaagatggc aagcaatttc aacgaatgat aagactgctg atggcacatt
     1741 tttctatggt gttacatcta cgaagatttt ttgctatcct tcttgtaaat cacgattacc
     1801 aaaaaaagaa aacatcgtta ttttccatag tgcggaggaa gctttttcgc atggctaccg
     1861 ggcttgtaaa cgatgtaaat ctggtggtac tgcgctacct gatacggagt ggataacaaa
     1921 tatcgaaatg tatattaaag aaaattttgc caaaccgctc actttacaaa tcattgcgga
     1981 tgattgccac ggaagtccgt accacttaca ccgaacattt aagcgaatca cgatgattac
     2041 acccattact taccttgaga acgtccggat tagttacgca aaaatgcagc taacctcgac
     2101 caaccaatcc attgaaacta ttggaaaaat ggctggcttt ccaaacccct ctcatttttc
     2161 tactacattt aaaagacata ccggtttgtc accaaaccaa tttcgaaaaa caataataaa
     2221 aaattaaatt agaacggatg atttgactat gacacatgta acattaccta ttttagaaga
     2281 ctgggaaggc ctttcactaa ctactatttt gcaagaaaaa tttcatctcg gtaaaaaagc
     2341 gcgacatgaa attcgcatgt ctcaaaatgt tttgctaaac aataagccac tggatgattg
     2401 gaatacgcca cttttcgttg gagcgagtct ttctttacca gttttcttac atgacaaaat
     2461 ccctgtctat gagtacgact tagaaattat ttatgaagat gattttttac tagtagtgaa
     2521 taaaccagtt gatatgaaaa ctcacccaaa tgatagttat gaaacagata cttgcgcgaa
     2581 tgccgtgcaa tattacttag aaaaaacagg ccaagatgcg aacgccctag cagttcaccg
     2641 tcttgatcaa actacttccg gtttagtact gtttgctaaa aacaaattag ctatcgccgg
     2701 cttatcttgg caaatggaaa atagagcgat tcaccggact tatctcgctg cagttgatgg
     2761 tacttgggga ctcgtgatgc aaacaatcaa caaaccaatt ggcgaagatc gtcaccacgg
     2821 ttccagacgc caaatcagcc catacggtca accagcagta acgcatgtta aagtattaga
     2881 aaatgataac gaaaaaaaca cctctcttgt agaatgccaa atcgaaactg gtcggacgca
     2941 ccaaattcgc gttcatttaa gcggaattgg ccatccaatt attggcgata cgctttatgg
     3001 tggttcccct cgtgctaatc gcatcatgct acatgccgaa aaattacatt taaatcatcc
     3061 tttcaaaggt aaagaaatga atttttctgc tccagctgga gatgattggg tattttaaaa
     3121 agccacaaca ttacgttgtg acttctgtac aaatttctac ttttattcca tttggatctt
     3181 caaaaaatac agcataatga ttttcaccgc cagcaaaagg atatctttct tcatatagaa
     3241 gtttggttcc ttttgctttt aatttggctc gaaaatcatc cacccgttct tttgtgccac
     3301 catgaaatgc caaatgattg agcccaactc gtttgcgatg ataaccttcc gcgacaaacg
     3361 gttcctctgt ttgcacaaat actaaatacg tatcggcgaa tttataacta aagccttcat
     3421 tccaagtctg gtataactca taagaaagtt cttctaacag ccctgaccaa aacaagcgac
     3481 tttcttctaa atcagctaca tatatttcca catgatgtaa catatcacgc ctccccgatg
     3541 tgtttaagtg cttctcttcg gcttaacggc gcaagcgagt gactatttac aaactgacga
     3601 actgccccgc tatcgacttt tgcatattgt ctgagcgccc atccaatcgc tttttgaata
     3661 aagaattctt tggaatccag ccatttttcg caattggaaa aaagtaaatc tacatcggtt
     3721 tcttctttgt acttcaattg aaataaaatt gccgttcgag cgagccaaat gttatctcca
     3781 tttatccacg cttcattata ggtaggaatc aactcaggat atagtttaaa atgattactt
     3841 actaccgttc ccgctaggcc atccacagta tcccaccaag atttcgttac aattaattgc
     3901 tcatatactt ttatcgcctc actaggctgt tttttaccgt aacggcttaa taaatcaatc
     3961 gccacatact gaaattcacg ctcttcttca gcaaataagg ctatcgtaaa tccaagtaaa
     4021 tcttgcggcg ccccattttc tttcaaatat tccgctacca atttttttcg ttcaccggct
     4081 ctaattccca aaaaagtaaa ttgatttttc atgtaagctt ccattggcgg agcatctatt
     4141 aaagaacgat tcgcgcggaa taccatttga atatctgtca ttccgcattc tcacctgata
     4201 aataagcgcg ttcccgttca atactactta aaaagtattc taaatcatct ggatctggtc
     4261 caacacgttt ccccgtttct aagcgatcaa ttttttccat atcaatggca tctagttgga
     4321 aataggacaa acgtgaattc tcctcaatcc gactagaagt aattgacttc ggaaaaataa
     4381 tcgtattgcg gttcaaatgc cattgtaaaa tcacttgatc tacagatgct tgatgttttt
     4441 tcgcaatttc tgtaatcacc ggattttgca ttaatattcc tttagccagc ggtgaccagg
     4501 cagcgtgcgc gatattctgt tccgccaaat acttacgaag gtcattttgc ggtaacagtg
     4561 gatgcgtttc cacttgattt aaaactggtt tttcatttgc agcaaccaat aagtcactta
     4621 aatgatgttg cttgaaattc gcaactccaa tagatttaat caatttttcg tcatgaagcc
     4681 gctccatcgc tcgccatgaa tcacggtatt tcccagctac aggccaatga attaaataca
     4741 aatccaaata atccaacttc aaattccgaa gtgttcgctc aaaagcaaat aacgtttcat
     4801 caaagccaag gtctccgttc cacactttcg aactaataaa taattcttct cgtgagactg
     4861 cgctactagc aattgcttgc ccaacaatcg cttcattatt ataaactgcc gctgtatcaa
     4921 acaaacgata acctacttca attgcctttt ccacagcacc agcgataaat tcttgttctg
     4981 ttacttgaaa tacaccaagt ccaatataag gaattgtctc attccccggt agtatcattc
     5041 tgtcttgtaa tgtttttgtc aaaacgaaac cctcctcacg aaaactgttt tgtgaacttt
     5101 ttctcttaaa tgaattatac actattttcg caaatttata ttttaaaacc agtataccga
     5161 aatgcgcctt actctcctaa taaaaagcca caaaaattct acttttttta ttcatttaat
     5221 gaaataccta aaaacagcca ttggaaacgc tgtcagaacg tttatttgca gagccgtcaa
     5281 aaaaaagttt cctatttatt cccatcctat gttagtatta atttgtggta aagatctatc
     5341 aagtttttta tttgttttcg ttaacttatc gttaagaaaa aagctccctt ttcaaagtaa
     5401 aagcgagctg attattaatg accaaaaatg atcgggggaa ttaagaaaat ggcttttaaa
     5461 aataaaaaag accgttttgc ttcgttgttg catgacattg cagtaaattt acatgaaggt
     5521 gcaaatttct ttgcaactta caacattaat tcggtggagg atttacatac tttctcgaat
     5581 aaaatcaaag aatatgaaac agctggagac tccatggttc acaaaatgat tatggaatta
     5641 aacgacgctt tcattacacc aatcgaacgt gaggacatgt tagaacttac taaccgctta
     5701 gacgacgtaa tggatgcact tgatgaaaca gctttctcac tagaaatctg ccaaatcact
     5761 cattatgatg aatacatgac taaatttatc caagctattc aagcaagcac tgttgaaatt
     5821 gaaaaagcag ttgaccttgt ttttgataaa aaactaaaag acgttcgtaa acttgcgatt
     5881 caaattaaag attacgaatc tcaatgtgat gatgtttacc gcgaatcact aatccaactt
     5941 ttccaaaacg aaaaagatcc aattaaacta attcgcctaa gagaagttta tgaaaaatta
     6001 gaagacattg ctgatagttg tcaaagcgtt gcgaatacgc ttgaatcaat tgtcatgaaa
     6061 aatgcgtaag gggcctagat agatggaagg aatgtttctc atcaccctcg tcatcgtact
     6121 tgccgcgcta gcatttgacc tgatcaatgg gtttcatgat acagctaacg caattgcgac
     6181 tagtgtctct acaaaagcct taaaaccacg acatgcgatt attcttgctg ccgtaatgaa
     6241 ctttgtgggt gctatttcat tcacaggggt tgctaaaaca attacaaaag acattgttaa
     6301 cccattcgac ttagatcacg gcgaacttgt tattttagca gcattacttt cagctattgc
     6361 ttggaactta atcacttggt atttcggaat tcctagtagt tcctcccatg ccttgattgg
     6421 atccatcgcc ggtgcagcca ttgcatcagc cggatttgca gcaattgaat acagcggatt
     6481 tactaaaatc attgttggtt tattagtatc tcctgtactt gctttcgtag tcggttacac
     6541 gatatattca ctcttcaagg ttttcctgaa gaacttaaac ttagccacga ccaatcggcg
     6601 cttccggatg attcaagtcg gaactgctgc gctacaatct tacacacacg gaactaatga
     6661 tgcacaaaaa tcaatgggga ttatcacaat ggcattaatt gctagtggtt tccaaacaac
     6721 cgatgatgtg caattatggg ttcaagtatc ctgtgcgatt gccatggcga ttggtacgag
     6781 tattggtggt tggaaaatca tcaaaactgt tggcggtaaa atcatgaaaa tcaaaccagt
     6841 taatggtgta gcggctgatt taagttccgt tatcattatt ttcggtgcta ctttcattca
     6901 tttaccagtt agtacaacac acgtaatcag ctcttctatc cttggtgttg gaacagctca
     6961 ccgtgtcaaa ggtgtcaaat gggatactgc ccaacgtatg attattactt gggttatcac
     7021 acttcctatt tcagcaacaa ttgcagcact tatcttctat gtactaagat tta
//
LOCUS       DASEAA010000132         7073 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.132, whole genome shotgun sequence.
ACCESSION   DASEAA010000132 DASEAA010000000
VERSION     DASEAA010000132.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7073)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7073)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7073
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.132"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..477
                     /locus_tag="U0342_002216"
     CDS             <1..477
                     /locus_tag="U0342_002216"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423559.1"
                     /translation="INNPEETTANEQKKNTVQDEQTEKPAQEDAAEDEQAEEPAQDDV
                     STPSKITSDSIELFNESIDRLISDSSGVLIKVVPFENEYDMLIAYVSQDLKYQDEATK
                     QKNVDYLGSEIQQRALGTLFGGDNNLRPMVEFRYKDETKMAGSSAFDKTNMKLKGK"
     gene            499..1239
                     /locus_tag="U0342_002217"
     CDS             499..1239
                     /locus_tag="U0342_002217"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423560.1"
                     /translation="MKKGMVLLTGFLLAFSIFLVGCGNEKNDIQVTNTNDKSNFKEKE
                     EAQMKLTETEITPNDKGDFSIMGVVDEGASVYIESEEAEVNSSGMFVASSNYTGSEEI
                     QYTVTAKEAGKTDNVQIVTILPPTLKEYSVGDTQEIGGIKVTLTSVEKTNERNQFDDT
                     KPKNVVKISYKVENNSGSEYFVDSDIDVYDSKGTMGERYPLDNTTGKIPNGKNMNADF
                     HAGVNESGNIEIIFNLFSDANLTFHAKI"
     gene            1305..2507
                     /locus_tag="U0342_002218"
     CDS             1305..2507
                     /locus_tag="U0342_002218"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990188.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2423561.1"
                     /translation="MVKKVKGRRYEGSIEQRSKNSWRMRVTVGYDYKGTPIRADRTTR
                     TKNERERERELRNFITELEQNGYTAPARMTFKAFVENEYMPKHAQNNLEVKTWTEYYK
                     SIVARAYPAFGGVQMDKITTLHIVNLVAKLQKPGARLDVKPTDSDEKKNKPLSPRSIR
                     NIYFAINSVFETAVEWKVIPINPAEGVRLPKTTKRPPTIYTPAEIELLNAALVKEPLR
                     LQVMIYIALISGCREAELAALEVKHVNLIEDELTFEQTLVAKAGEGLLLKESTKNDVA
                     GIVSIPAWLTNLIETYISNEVLDLKTEGKWTNHKFLFANMEGKPIRPDSIYQRWKRFL
                     ERHNLPVIRFHDLRHTSATLLLNKGRDIKIIQERLRHKSSVTTSNIYAHVLKDTHKDA
                     ASDFENPF"
     gene            complement(2614..2686)
                     /locus_tag="U0342_002219"
     tRNA            complement(2614..2686)
                     /locus_tag="U0342_002219"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2651..2653),aa:Lys,seq:ctt)
     gene            complement(2774..3730)
                     /locus_tag="U0342_002220"
     CDS             complement(2774..3730)
                     /locus_tag="U0342_002220"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463611.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacid dehydrogenase family protein"
                     /protein_id="HEM2423562.1"
                     /translation="MTASVFVAGKLLPETMEALSEWDVKAFSGEENITEAELIKNVTE
                     VDAIICPLSSPISAKVLESAKNLKIVANIGAGFDNIDVKKAQELGIAVTNTPDVSTEA
                     TAELTLGLILDVARRISEGDRLCRETPEQFKGWAPTFFLGTELSGKTLGIIGLGRIGQ
                     AVAKRAAAFGMKIIYSGHHPKEAAKEWNAEFVSQEELLKRSDVVTIHAAYSPSLKYLL
                     NETTLKTMKSSAFLINAARGPVVEEAALIKALEAGVIAGAALDVFEFEPKIGEDLAKL
                     DNVVLTPHIGNATVETRTAMGKIAIANVEAVLAGKAPLHSVY"
     gene            3861..4499
                     /locus_tag="U0342_002221"
     CDS             3861..4499
                     /locus_tag="U0342_002221"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463610.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pentapeptide repeat-containing protein"
                     /protein_id="HEM2423563.1"
                     /translation="MKKITAPRIPDGDLTVYPNDTYFIEDIGEVSEQIFRKTTLTGEI
                     FEHFHLETIIFDGCVFDSVSLVSANLTDVVFKNCDLSNLDLMGAIIHRVRFENCKLIG
                     VNFSDATLRNCVFVDCYADYVAFRYANLKWVAFEAGAYTNSDFSGAQLVDTYLERLDL
                     NKAQFLNCALNGVDLSSCIFESITAMPQDLKGVSIDFSHAPALMPLFGIRVK"
     gene            complement(4521..5573)
                     /locus_tag="U0342_002222"
     CDS             complement(4521..5573)
                     /locus_tag="U0342_002222"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463609.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional transcriptional activator/DNA
                     repair protein Ada"
                     /protein_id="HEM2423564.1"
                     /translation="MITNQRDIDKYYDMLVEKNSNYEGVFFVGVKTTGILCRPTCPAK
                     KPLKENCEFFSTAKEALLASYRPCKRCEPLSNPTKLSPAVKLLVDAIEKNPEKKWTDK
                     DFDELSISANTARRQFKKQFGMTFIEYARSRRLGLAFKHIRGGNSIINAQIESGYESG
                     NGFRDAFSKTMGEVPHKSNDITILYSAWLETKLGSMLAISDDDSLLLLEFVDRKGLET
                     EIKKLRVRLNAAITPEKTIIIQQIEAELAQYFNGALIDFKTPIRYIGSDFQQSVWNEL
                     RRIPIGETISYKSLAEKLGRPTASRAVARANGANQLSLIVPCHRVINTNGALGGYGGG
                     LARKEWLIKHEKMVPR"
     gene            complement(5570..6343)
                     /locus_tag="U0342_002223"
     CDS             complement(5570..6343)
                     /locus_tag="U0342_002223"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isocitrate lyase/phosphoenolpyruvate mutase
                     family protein"
                     /protein_id="HEM2423565.1"
                     /translation="MTKNFKKLKSLHELPTPLILYNCWDVASARAIQQGGAPVIATSS
                     YAIAESLGAVDGEHLTFDEMFLVISRIAKNVSLPLTVDIETGYARNLEELAQNVERLL
                     AIGVCGVNLEDQLIGVTNPGLCSTEEQCDKIETIKETAAKMSTEIFINARTDVFFQGR
                     DETVDLLEEAIDRAKAYKEAGADAIFIPGLLLPKLIRAFVEKSPLPVNVMRMDGMLSN
                     EDLQKIGVKRISYGPFSFFQANLAIQLEVERIFEGGKAL"
     gene            complement(6770..7073)
                     /locus_tag="U0342_002224"
                     /pseudo
     CDS             complement(6770..7073)
                     /locus_tag="U0342_002224"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009927999.1"
                     /note="internal stop; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         2171 a         1422 c         1326 g         2154 t
ORIGIN      
        1 attaataatc cagaagaaac tacagcaaat gagcaaaaaa agaatactgt ccaagatgag
       61 caaacggaaa aacccgctca agaagacgct gccgaggacg agcaagcaga agaacctgct
      121 caagatgatg tatctacacc ctctaaaatt acatcagata gtatagagtt atttaatgag
      181 tcaattgatc gcttgatttc tgattcgagc ggggtactaa taaaagtggt tccatttgaa
      241 aatgaatatg atatgttaat tgcgtacgta tctcaagatt taaaatatca agatgaagca
      301 actaaacaaa aaaatgttga ttatttagga agcgaaatac agcaacgtgc tctaggtacg
      361 ctctttggtg gagataacaa tctaagacca atggttgagt tcagatataa agatgagaca
      421 aagatggctg gaagtagtgc ttttgataaa actaatatga agctcaaagg aaaataaaat
      481 ataaagggag cagataagat gaaaaaaggg atggttttat taacggggtt tttattagct
      541 tttagtattt ttttagtagg ttgtggaaat gaaaaaaatg atatacaagt tacaaatacc
      601 aatgataaaa gtaatttcaa agaaaaagaa gaagctcaaa tgaagttaac agaaacagaa
      661 attacaccaa atgataaagg cgactttagc ataatgggcg ttgtcgatga aggtgcatct
      721 gtttatattg agtcagaaga agcagaagtt aattcatcgg ggatgttcgt tgcttctagc
      781 aactacaccg gctcggaaga aattcaatat actgttacag ctaaagaagc tggaaaaact
      841 gataatgtac aaattgtaac tatacttcca cccactctga aagaatacag cgttggtgat
      901 acacaagaaa tcggcgggat aaaagtaact ttaactagtg ttgagaaaac gaacgaaaga
      961 aatcaatttg atgataccaa gcctaagaat gtagttaaaa taagttataa agttgaaaat
     1021 aattctggct ctgagtactt tgtcgattct gacattgatg tatacgattc taaaggtaca
     1081 atgggcgaaa gatacccatt ggataacaca accgggaaaa taccaaacgg aaaaaatatg
     1141 aacgcagact tccatgcggg agttaatgaa agtggaaata ttgaaataat cttcaactta
     1201 ttttctgatg caaatttaac gttccatgca aaaatttaaa agagagcctc tgggcttttc
     1261 tttttaccga aaaaagaacg tatgtgcgaa aggaggactt atttatggta aaaaaagtaa
     1321 aaggtaggcg ttatgagggt tctattgaac aacgtagcaa aaattcatgg cgtatgcgcg
     1381 tgactgtagg ctatgactac aaaggtacgc cgattcgggc tgacagaacg acgcgaacaa
     1441 aaaatgagag ggagcgagaa agagagttaa gaaatttcat cacagaatta gagcaaaatg
     1501 gatatacagc tcctgcaaga atgacattta aagcatttgt tgagaatgag tatatgccaa
     1561 aacatgcaca aaataaccta gaagttaaaa cctggacaga atactacaaa tctatagtag
     1621 caagagctta cccagccttt ggcggcgttc aaatggataa aataactaca cttcatatag
     1681 ttaatttagt cgcaaaatta caaaagcccg gcgcaagatt agatgttaaa cctacagatt
     1741 cagacgaaaa gaaaaataag ccactttcgc cacgatctat cagaaatatt tattttgcga
     1801 taaattcagt atttgaaact gcggttgagt ggaaagtaat cccaattaac cccgcagagg
     1861 gtgtaaggct tccaaaaaca actaaaagac cgcctactat ttatactcct gctgaaattg
     1921 aattgttaaa tgcagctcta gtgaaagagc cacttagatt gcaagtaatg atttatatag
     1981 cgctgatttc aggttgtaga gaagctgaat tagcagcatt agaagtaaaa cacgtgaact
     2041 taatagaaga tgagctaaca ttcgaacaaa cgctagttgc aaaagcagga gaaggtttac
     2101 ttcttaaaga atcaactaag aatgatgtag ctgggatagt ttctataccc gcttggttaa
     2161 ctaatttaat agaaacatat ataagcaatg aagttttaga cctaaaaact gaagggaaat
     2221 ggaccaatca caaattttta ttcgccaaca tggaaggcaa accgattagg cctgattcga
     2281 tttatcagcg ttggaaacga tttttagaaa gacacaactt gccggtgatt cgttttcatg
     2341 atttgcgtca cacatctgct acacttttat tgaacaaagg tagagatata aaaattatcc
     2401 aagagcggct tagacataaa tctagtgtga ccacttcaaa catttatgca catgttttga
     2461 aagatacgca caaagatgca gctagcgatt ttgagaaccc tttttaagct ttctgcccca
     2521 cctctgcccc acttaataaa aaaaggcaat tttaaactaa aatttcacaa acaaaaaacc
     2581 gcttaaacgc tttgtttagg cggtttttat atatgggttg tgagggtttc gaacccccga
     2641 cccgctgatt aagagtcagc tgctctacca actgagctaa caacccgttg tcgtattccg
     2701 acaaaaaata ttataccata attcagcgat aaaacacagc cgcagccact cgctgcggct
     2761 atatttttcg gtattaataa acagaatgta gtggtgcttt tcctgctaag acagcttcaa
     2821 catttgcaat ggctattttg cccattgctg tgcgtgtttc cacagttgcg tttccgatat
     2881 ggggtgttaa tacgacatta tccagtttag ccaaatcctc gccaatctta ggctcgaact
     2941 caaacacatc cagcgcagcg ccggcgataa cgcctgcttc taatgcctta atcagtgcag
     3001 cttcctctac aacaggaccg cgagcagcat tgatcaaaaa ggcacttgat ttcatcgttt
     3061 tcagtgttgt ttcgttcaac agatacttca agctgggact gtatgccgca tggattgtta
     3121 caacatcgct gcgcttcaat aattcttcct gactcacaaa ctctgcattc cactctttcg
     3181 ctgcttcttt cggatggtgc ccagaataaa taattttcat tccaaaagca gccgcacgtt
     3241 ttgcaacagc ttgtccgatt cttcctaatc caataattcc gagcgttttg ccacttaatt
     3301 cagtacctaa aaagaacgtt ggtgcccagc ctttgaattg ctcgggtgtt tcgcggcata
     3361 atcggtcgcc ttctgaaatt ctccgtgcta cgtccaaaat caatccaagc gttagttccg
     3421 ccgttgcttc cgttgacaca tctggcgtat tggtcactgc aatgcccaat tcttgcgctt
     3481 tttttacatc gatattgtca aaaccggcac caatattcgc cacgatttta agattttttg
     3541 ccgattccaa tacttttgcc gaaattgggg aagaaagcgg gcaaataatc gcatccactt
     3601 ccgttacatt ttttattaac tctgcttctg taatattttc ctcacctgaa aaagctttaa
     3661 cgtcccattc actaagagct tccatcgttt ctggtagtaa ttttcctgcc acaaatacgc
     3721 tcgctgtcat cacgttcact cctcaactgc catttttatt ctacattcat tgtaatccgt
     3781 tttttatgaa aggtaaacga ttttccgctc cttttcctag caaaatacgg tataatgaaa
     3841 gcggaagtga ggtcgatata atgaaaaaaa ttactgcgcc gcggattcct gatggggatt
     3901 tgacggttta tccgaatgat acatatttta ttgaagatat tggagaagtt agtgagcaaa
     3961 tctttagaaa aacaacgcta actggggaaa ttttcgagca ttttcattta gaaacgatta
     4021 tttttgatgg ttgtgttttt gattcggttt ctcttgtaag tgcgaatttg actgatgttg
     4081 tatttaaaaa ttgcgattta tcgaatttag atttaatggg cgcaattatt caccgagttc
     4141 gttttgaaaa ttgtaaatta attggcgtga attttagtga tgctacgctt agaaattgcg
     4201 ttttcgttga ttgttatgcg gattatgttg cctttcgtta tgctaacttg aaatgggtgg
     4261 cgtttgaggc gggcgcgtat acgaatagtg attttagcgg ggctcaactg gtcgatacct
     4321 atttggaacg gcttgatttg aataaagcgc agtttttaaa ttgcgcgcta aatggtgttg
     4381 atcttagctc atgtattttt gagtctatca ctgcaatgcc gcaagatttg aagggcgtga
     4441 gcattgattt ttcgcatgct cctgctttga tgccgttgtt tgggatacgg gttaaataat
     4501 tgaaaaaaga tggttccgcg ttaccttgga accatctttt catgtttaat tagccattct
     4561 ttgcgcgcaa gaccgccacc gtagcctcct aatgctccgt tagtattgat tacacgatgg
     4621 cacgggacga tgagggataa ttggttagcc ccatttgctc ttgccacagc tcgacttgct
     4681 gttggccgcc ctagtttttc tgccaaactt ttgtacgaaa ttgtttcgcc tatcggaatt
     4741 cgtcgcagtt cattccagac actctgttga aaatctgacc cgatatagcg aatcggtgtt
     4801 ttaaaatcaa tcaatgctcc attaaaatat tgcgctaatt cggcttctat ttgttgaatt
     4861 attattgttt tttcaggtgt aatagccgcg tttaagcgca ctcgtaattt tttaatttct
     4921 gtttccaatc cttttcgatc aacaaattcc agaagcaata gactatcatc atcagaaatt
     4981 gcgagcattg atccaagttt agtttcaagc caagcggaat acaaaatggt gatatcgttt
     5041 gatttatgag gaacctcccc catcgttttt gaaaaagcat ctcggaaccc atttccagac
     5101 tcataaccac tttcaatttg tgcattaatg atcgaatttc caccccgaat atgcttaaaa
     5161 gcaagaccga gacgccgcga acgcgcatac tcaataaaag tcatcccaaa ctgcttctta
     5221 aactggcgcc gcgctgtatt tgcgctaatg gataattcat caaaatcttt atccgtccat
     5281 tttttctctg gatttttctc aattgcatca acaagcaact tcacagctgg cgacaatttc
     5341 gtcggattgg agagtggttc acaacgcttg caaggccggt aagatgcaag tagcgcctcc
     5401 ttggctgtac tgaaaaactc acaattctct tttaaaggtt tcttcgccgg acacgttggg
     5461 cgacaaagta ttcccgtcgt tttcactcca acaaaaaata cgccttcata attcgaattt
     5521 ttctccacta acatatcata atatttatca atatcccgct gattcgttat cacaaggctt
     5581 tccctccttc gaaaatccgc tcaacttcca gctgaatcgc taaattagcc tgaaaaaaac
     5641 taaacggccc ataactaatt cttttcacac cgattttttg taagtcctcg tttgagagca
     5701 tcccatccat cctcatgacg ttgaccggaa gcggtgattt ctccacaaat gcgcgaatta
     5761 attttggtaa tagcagaccc ggaataaaaa tagcatctgc cccagcctcc ttgtatgcct
     5821 ttgccctgtc aatcgcttct tccaacaagt ctaccgtctc atcccgccct tggaaaaaga
     5881 catctgtacg cgcattgata aaaatttccg tgctcatttt cgccgccgtt tctttgattg
     5941 tctcgatttt atcacattgc tcctcagtac tgcataaccc cggatttgta acgccaataa
     6001 gctgatcttc caagttcaca ccacaaacac caatcgctag caaccgctcc acattctgag
     6061 ccagttcctc taaatttcta gcatacccag tctctatatc caccgttagc ggcaaactca
     6121 cattcttggc aatgcgcgaa ataactaaaa acatttcgtc aaaagttaaa tgctccccat
     6181 ccacagcgcc gagtgactct gcaattgcat aactgcttgt cgctattact ggtgctccgc
     6241 cttgttggat tgctctggca gaagcgacgt cccagcagtt gtagaggatt agtggggtgg
     6301 gtagttcgtg tagggatttt agttttttaa agttttttgt cattggtttc aactccattt
     6361 gttaggatgg agttagtata gcaggtgggg agattggagg taccaggaaa attaacatgg
     6421 atgttttttg gtagatgtat gtagaactgt aaactcttgc atacgctaag tagcctaaaa
     6481 ttctcttcct catcttaagc tacttgttcc cgtatatagt taatttcatt ctctctttga
     6541 aatttgttgt agaattttgt cacttgtctt tttattggtt tttaatgcta ctttagtttc
     6601 tttttctcta taattattaa taaaaagcag cactatctac aaccatcctt accaatccca
     6661 gttttccgta aaagtttatt tgaatgacaa taatttaata aatctatttt caatatcact
     6721 agtgagttta gcaattacaa tcctgtttac tcttttgtac tctaaatttt cacttccccc
     6781 atagcgggca ggagtattct ggcggttccc cacctttctc tcttcgacga ttcgataaaa
     6841 ccctactttg cataatattt aaaaatttat ccatagcatc aaaaacatta ttaaactcat
     6901 atttccccac tacactagct ctatcagctg tcatataaac ttcaaactta tcttcattct
     6961 tctcaactct aacttgatat tattgtcgat tatttttctc gccttcgaat atagcgtatc
     7021 ttaattcctg ataacccaat aaataaatat cttcttctaa aattttttta tat
//
LOCUS       DASEAA010000133         7030 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.133, whole genome shotgun sequence.
ACCESSION   DASEAA010000133 DASEAA010000000
VERSION     DASEAA010000133.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 7030)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 7030)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..7030
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.133"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..3630
                     /locus_tag="U0342_002225"
     CDS             <1..3630
                     /locus_tag="U0342_002225"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2423566.1"
                     /translation="NLDVHSNRITNTSVIHDLPSLETFYAQNNLITNIGTMDNLPELT
                     YVDLSFNRIPSLAPIGDLPKLEILKVTDNYSYLRSLGTMDGVSKLRNLELQNNYLNYT
                     GTEGNLSALSDLTNLTELNLRDNGYISDISGLSTLSRLIYLNLDSNKIKDISALSNLT
                     TLQELTLENNQIEDISALSDLDNLNKLALSKNKIIDISPAANMVNRGASVTASNQTYT
                     LPTVLSYQSSFTIDNPVVWYDGTPLAPSSIAHSGTYKDGEITWTNMTAASSSTEFNFN
                     RLKDGLTFSGTITQPYKSAVKVTANAEQTYTIGDTISEEQFLKDVNAKSSDGAPVTSD
                     FATVVDLNTFGEYEVTLTSEKDGIQGDSCKVIVKVLHGAPVISADQTINYDKHATITE
                     KQFLEDVHASTDLNTAITTNFSTAVNLNKGGDYTVALNSENEDGVKAETVYVTVTVDK
                     DPAPIISAKTDITYDKFSKKTEAAFLDDIDADTNDGSIITSNFATAVNLDKAGDYTVT
                     LNSINSDGVASTPTAIIVHVEKEKIATISANTAQQYEKYAEINETQFLKDVHASINAS
                     PTTAVLESDFETVVKLDVPGTYTVTITATNEDGGVSAPKEVSVIVKKLPAPEITADKE
                     ITYPKFDEVSEAEFLSDIHATINEKNVTITSNFSADVNLNKAGDYTVTLNATNEDGVK
                     ATPVEVIVHVQQGERPVITADATISYDKFANITEAKFLEDIHATSSDGQSSTVITSNF
                     ETATNFKTAMSYTVTLNAVNEDGISAEPVAVTVTINKEPAATLKADAEVSYAKNEAVT
                     ESDFFKDVHLEGAEAPSTAKATSNFDSVVDRSKTGDYTVTINATNEDGAVSTPIEVIV
                     HIGAESAPVITANAEVKYNKHEQTDERRFLYDSDAKIDEANVEIKTDFAEKVDINKVG
                     TYTVTLTATNEDGQAANPVEVSVIVSDAAAEKVNVKYVDENGAEISAAETLTGNLDDA
                     FSIDAKSIAGYKCDATLSGVFSTVEQTVVFHYKAIEPGVVTIKYEDANGKAVAEDKQI
                     TGEVGDDFEAEAQTVSGYSCRAIASGKITEEPQTITFTYTTATPSKKSGEITVQYVDE
                     SGKKLADSKKVTGDIDDSYSVEAKAIDGYSVVGDDSAKGVFTEKSQTVTFKYKKNTQV
                     SKDEPKVKGKTNQPPSADTKLKVDNNTLPATGDTENMALAVLIGFNMLLVASIFLFRK
                     PKTNQ"
     gene            3854..4378
                     /locus_tag="U0342_002226"
     CDS             3854..4378
                     /locus_tag="U0342_002226"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-directed RNA polymerase I"
                     /protein_id="HEM2423567.1"
                     /translation="MNKMIIYSSQYGTSKKYATELSQKKAIPMYSVESIPESIVEADE
                     IIYVGAIYMGKVLGFDKFSKNYKTLSSKLIVISAGMYDPTRKENTDNIELTVKENLQK
                     TNFLLKDIFCLKGRLDTQQLRLKHKMLVNALYKSAKRKKESDLNDNERDIVRAYEDDS
                     QIDLNKLDGILDRV"
     gene            4591..4875
                     /locus_tag="U0342_002227"
     CDS             4591..4875
                     /locus_tag="U0342_002227"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 domain-containing protein"
                     /protein_id="HEM2423568.1"
                     /translation="MREIKVSEVTFQQHATKLASKSSGRYLPLKNGNMAYSRANSIDQ
                     LRSALIDLVGVVEDFQHVTKQDAGRLKKMGIAYAKQDQVMGQKINQLEVR"
     gene            4876..5244
                     /locus_tag="U0342_002228"
     CDS             4876..5244
                     /locus_tag="U0342_002228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P"
                     /protein_id="HEM2423569.1"
                     /translation="MDSAHRQLEQQLQQIKKAKIMAETDVDQTRRKQNEQDWLEEDSH
                     QLTQEKLVLLDFLRSGWQGEEASGFHRFLEEQQHEESQAWRRDLQDKRSDLDTELQEN
                     KARLHTLETKQATLQKEWSK"
     gene            5241..6677
                     /locus_tag="U0342_002229"
     CDS             5241..6677
                     /locus_tag="U0342_002229"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009928199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
                     /protein_id="HEM2423570.1"
                     /translation="MSRIDIAELNDFLHGLRSSNAEAKAMIRKIKEAAMDYAQDNRLK
                     GEAVSTSKRYFSSTYTSICQSIIEALDESEERLAQYIREFGSQVDSSPSARIDAEILQ
                     EAMAKVSQLQRKEEDLHRQLTAPNTKPDMQQVYAVKSRSVHTQLLKAIEKENILERYL
                     AFEQSHGQFFSALDELIRATGRAVQELLHHVTFNDKTGTYSVPKSAVNSLLLMKKALD
                     NARTENDQDPFPKAFEDYTVLAYTYVNDQGETVTMWLLEKDGKRVENKELQDFLEKHG
                     QELDPLLYTNLSGEELERKVNDSWKEGINYLNGQKVSGFSGATLRSSAYVASMKDWTD
                     DAGLTDMALGLGFGIAAARNKAIIPKKSSGLKFDDIEKLENHFTKHGGEFKGAYSNIN
                     EYLKGANNVIKNGEKVQYNYTLKDGTTELRTGYVKFMGNTSKGKAKFEFVGTNLSGDI
                     TTYHVKRGEDVYKLLNGNKHINVINPIE"
     gene            6689..>7030
                     /locus_tag="U0342_002230"
     CDS             6689..>7030
                     /locus_tag="U0342_002230"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423571.1"
                     /translation="MRYEAKIISENPNIEEELKIKIKDIELLCFVEEYKCSVEVGQEY
                     IVELETVVFDDLDIEKSTLQAKEITQVADSFAYFIRGVFHPSSKKIDSGIEIDLADED
                     ISDFWYLENQFV"
BASE COUNT         2595 a         1108 c         1468 g         1859 t
ORIGIN      
        1 aacctagatg tgcattcaaa tagaattaca aatacatccg ttatacatga tttaccaagt
       61 ttggagacgt tttatgcgca aaataatttg attaccaata ttggtacgat ggataattta
      121 ccagaattaa cttatgtaga tttatctttc aacagaatac catcacttgc tccaattggc
      181 gacttaccca agttagaaat attaaaagtt acagacaatt attcttattt aagaagccta
      241 ggaacgatgg acggtgtttc taagctgaga aatttagaat tacaaaacaa ttaccttaat
      301 tacactggaa cagaagggaa cttaagtgca ttaagtgatc taacaaatct aacggaatta
      361 aatttgcgag ataatggtta tattagtgat ataagtgggc tttccaccct atcaagacta
      421 atctacttaa atttagattc caataaaatt aaagatattt ctgccttatc taatttgacg
      481 actcttcaag aattaacact tgaaaacaac cagattgaag atatttcagc acttagtgat
      541 ctggataatt taaacaagct agctctatca aaaaataaaa ttattgatat tagtcctgcc
      601 gctaatatgg ttaatcgggg ggcgagtgtt actgcgagta atcaaacata tacattgcca
      661 actgtattat catatcaaag ctcatttacc atagataatc cggttgtttg gtatgacggc
      721 acaccactag cgccatcatc tatagcgcac tctggtactt acaaggatgg ggaaataact
      781 tggactaaca tgaccgcagc ctccagttcc actgaattta actttaatag gctaaaagat
      841 ggtttaacct tctcaggaac aatcacccaa ccttataaat ctgcagttaa agtaactgca
      901 aatgcagagc aaacttatac aattggtgat actatttcag aggagcagtt tttaaaagat
      961 gttaatgcaa aatcatcaga cggtgcacct gttacaagtg attttgctac agtggtggat
     1021 ttaaacactt ttggtgaata tgaagttact ctaacttctg aaaaagatgg aatccaaggg
     1081 gatagttgca aagtaattgt caaagttctt cacggagcgc ctgtcatttc ggcagaccaa
     1141 acaattaatt atgataaaca tgcgactatt acagagaaac aatttttaga agatgttcat
     1201 gcgagtacgg atttaaatac agctattaca actaatttta gtacagcagt taacttgaat
     1261 aaaggcggag attataccgt tgcgctaaat tctgaaaatg aggacggcgt gaaagctgaa
     1321 acggtctatg tcactgttac tgtagacaaa gatccggcgc cgattataag tgcgaaaact
     1381 gacatcactt atgacaaatt ctctaaaaaa accgaagcag ctttcttaga tgatatagac
     1441 gcagatacaa atgatggctc tataataact tctaactttg ctacagcagt taatttagat
     1501 aaagcaggtg attatactgt tactctgaat tctattaata gtgatggtgt agcgtctacg
     1561 ccaactgcaa ttattgtcca tgtggagaaa gagaaaatag caacgattag cgcaaatacg
     1621 gcacaacaat atgaaaaata tgcggagatt aatgaaacgc aatttctaaa agatgttcat
     1681 gctagtatta acgcgagccc aacaaccgca gttttggaaa gtgattttga aacagtagtt
     1741 aaactagacg tcccaggaac gtacacagta acgattactg ctacaaatga agatggcgga
     1801 gtatcggcac caaaagaagt ttctgtcata gtaaaaaaac ttccagcgcc agaaatcact
     1861 gctgataagg aaataaccta tccgaaattt gatgaagtaa gtgaagcaga atttttaagt
     1921 gatattcatg caactattaa tgaaaaaaat gtaacgatta caagtaactt cagtgccgat
     1981 gtgaatttaa ataaagctgg cgattacacg gtaacattaa atgctacgaa tgaagacggc
     2041 gtaaaggcta caccggttga agtaattgta catgttcaac aaggagaacg tcctgttata
     2101 acagccgatg caactatttc ctatgacaag ttcgctaaca taacggaagc gaagttctta
     2161 gaagatattc atgcaacaag tagtgatggt caaagctcaa ctgtaatcac ctctaatttc
     2221 gagaccgcga caaacttcaa aacagccatg agctacacag ttacgcttaa tgctgtaaat
     2281 gaagacggca ttagcgcaga accagtagca gtgaccgtta caataaataa agaaccagcc
     2341 gcgacgttaa aagctgatgc agaagtaagc tatgcgaaaa atgaagctgt aaccgaatct
     2401 gatttcttca aagatgttca tttagaagga gcggaagccc caagtacagc aaaagcaaca
     2461 agtaattttg attccgtagt agatagaagt aaaacaggag attatactgt tacgataaat
     2521 gctacaaacg aagatggggc tgtctctaca ccaattgaag taattgttca cattggagca
     2581 gaaagtgcac cagtaattac agcgaatgca gaagtaaaat ataacaaaca tgaacaaaca
     2641 gatgaaagaa gatttttata tgatagtgat gcaaaaatcg atgaagctaa cgtggaaatt
     2701 aaaaccgatt ttgcagaaaa agtagatatt aataaagttg gaacttatac ggtcacactg
     2761 actgctacga atgaagatgg ccaagctgcc aatccagtag aagtaagcgt cattgtaagt
     2821 gatgctgctg ctgaaaaagt aaatgtgaaa tatgtagatg aaaatggagc agaaattagt
     2881 gcagcggaga ccttaactgg taatctagat gatgcatttt ctattgacgc gaaatctata
     2941 gctggataca aatgtgatgc cactttaagc ggcgtatttt caacagttga gcagacagtt
     3001 gtgtttcatt ataaagcaat cgagcctggt gttgtaacga ttaaatacga agatgcaaat
     3061 ggaaaagcag ttgccgaaga taaacaaata actggcgaag taggagatga ttttgaagct
     3121 gaggcgcaaa cggtgagtgg ttattcatgc cgagcaattg caagtggtaa gataacagaa
     3181 gaaccgcaaa ctattacttt cacatacact acagcaacgc cttccaaaaa atcaggcgaa
     3241 ataacagttc agtatgtaga tgagtcaggt aagaaattgg ctgattctaa aaaggttaca
     3301 ggggatattg atgatagtta tagtgtagaa gccaaggcaa ttgatggcta tagcgtagtt
     3361 ggcgatgatt ctgctaaagg tgtttttacc gaaaaatcgc aaacagttac ttttaaatac
     3421 aagaaaaata cacaagttag taaagatgag cctaaagtta aagggaaaac aaaccaacca
     3481 ccaagtgctg atacgaagct aaaagtagac aataatacgt tgcctgccac cggagatact
     3541 gaaaatatgg cattagcagt tttaatcggt tttaatatgc tactcgttgc tagtatattc
     3601 ctttttagaa aaccaaaaac gaaccaataa atggataatc tttaaataat agaagcctta
     3661 tagaattcat taaataatga tattttataa ggcttttatt acttattgaa ccaaatctaa
     3721 caggaagtaa tgatgaaaag cttccttcta atttctaatg tgaactataa aacgttcatg
     3781 aaatgcacac aaacaatttg tttttgaatg ttataataat atggaagctt ataaagaagg
     3841 gagcaggaag atgatgaata aaatgattat ttattcaagt caatacggca ccagtaagaa
     3901 atatgcaaca gagcttagtc agaagaaagc tattccaatg tattctgtgg aatctattcc
     3961 tgaatcaatc gttgaagccg atgaaatcat ttatgttggt gcgatctata tgggaaaagt
     4021 actcggattt gataagtttt ctaaaaatta taaaactttg tcaagtaaat taatcgttat
     4081 ttcagctgga atgtatgatc caacacgcaa ggaaaatacg gataacatcg aattaacggt
     4141 caaagaaaac cttcaaaaaa ctaatttttt attaaaagac atattttgtt taaaagggag
     4201 actagataca cagcaactcc gcttgaaaca taaaatgtta gtcaatgctt tatataagag
     4261 tgcaaaaaga aaaaaagaga gtgacttaaa tgataatgaa agagatatag tgcgtgctta
     4321 tgaagacgat tcgcagattg atttgaataa gttagatggt attttagata gagtgtagct
     4381 gacaaccaaa agaaaatagc ccaaaagcct gtctttaaag agaggctttt tggtattgac
     4441 ttagttagaa gatgaaatgt taattttttc acttaaaaag ctgattttaa gctgtttttc
     4501 aatgaattgt ttcacagaat gctcacaaaa gaggtgtgct accggtgcta taatgagggg
     4561 gaaggattta catagagagg aagcatgcag atgagagaaa taaaagttag cgaagtaacc
     4621 ttccaacaac acgcaaccaa attggcaagt aaaagttcgg gaagatactt accattaaaa
     4681 aacgggaaca tggcttattc cagagccaat tcaattgatc aattgcggtc ggcattgatt
     4741 gatttggtag gcgtagtgga ggattttcaa cacgtgacca agcaagatgc gggccgatta
     4801 aagaaaatgg gtattgccta tgccaagcaa gaccaggtca tgggacaaaa aatcaatcag
     4861 ttggaggtgc gttaattgga tagcgcacac cgccaactag aacaacaact ccaacaaatt
     4921 aaaaaagcga aaataatggc agaaacggat gtcgatcaaa cgagaagaaa acaaaatgaa
     4981 caagattggt tagaagagga cagccaccaa ttaacacaag aaaaactggt gttattagac
     5041 tttttacgca gtggctggca aggtgaagaa gccagtggtt ttcatcgttt tttagaagag
     5101 cagcaacacg aagaatctca ggcttggagg cgtgatcttc aggataaaag aagcgattta
     5161 gacacggaat tacaagaaaa taaggccagg ctccacacgt tagaaaccaa acaagccacc
     5221 ttacaaaagg agtggagcaa gtgagccgga tagatattgc ggaattgaat gactttctcc
     5281 acggtttgcg aagtagtaat gcggaagcca aagcgatgat tagaaaaatt aaagaagcag
     5341 cgatggatta cgcccaggac aatcgtttaa aaggggaagc agttagtacc tccaaacggt
     5401 atttttctag tacctataca agtatttgcc agagcatcat tgaggcactg gatgaaagcg
     5461 aagagcgact agcgcaatat attcgcgagt tcgggagcca agtggatagt tcgccttctg
     5521 ccagaattga tgcagaaatc ttacaagaag cgatggccaa ggttagccag ttacagcgaa
     5581 aagaagaaga cttgcatcga caattgacgg cgccgaacac gaagccggat atgcaacaag
     5641 tctatgcagt gaaatcaaga agtgttcata cacaattatt gaaggcaatc gaaaaagaga
     5701 acatcctaga aagatattta gcttttgaac aaagtcatgg ccagtttttt agtgcgttag
     5761 acgaactcat tcgagcaacc ggacgtgcgg tgcaagaatt gctacatcat gtgactttta
     5821 acgataaaac agggacttat tccgtgccga aaagtgcggt aaacagcttg ttgcttatga
     5881 aaaaagcgct ggataacgca cgaacagaaa atgaccaaga cccctttccg aaagcttttg
     5941 aagattacac cgtgttagct tatacttatg tcaatgatca aggcgaaacc gtgacgatgt
     6001 ggttacttga aaaagatgga aaacgagtag aaaacaagga attacaagat ttcttagaaa
     6061 aacatggtca ggaattagac ccacttcttt ataccaacct ttctggagaa gaactcgaac
     6121 gaaaagtgaa tgattcttgg aaagagggta tcaactattt aaatggtcaa aaagtatctg
     6181 gattttctgg agccacactg cggtcatccg cttatgtggc tagtatgaaa gattggacag
     6241 atgatgctgg gttgacagat atggcattag gtttagggtt tgggattgca gcagctagaa
     6301 ataaagcgat aatacctaag aaatccagtg gacttaaatt tgacgatata gaaaaattgg
     6361 aaaaccattt tacaaaacat ggaggggagt ttaaaggtgc atattcgaat ataaatgaat
     6421 atctaaaagg ggcgaataat gtaattaaga atggtgaaaa agtacaatat aattatacat
     6481 tgaaggatgg aacaaccgag ttgagaactg gctatgtgaa gtttatgggg aacactagta
     6541 aaggaaaagc aaaatttgaa tttgttggta ctaacttatc tggagatatt acgacctacc
     6601 atgtgaaacg cggcgaggat gtatataaat tattgaatgg aaacaagcat ataaatgtga
     6661 taaatccaat agaataggag aataataaat gagatatgaa gcaaaaataa tttcagaaaa
     6721 tcctaatatt gaagaagagt tgaaaattaa aataaaagat attgaacttt tatgttttgt
     6781 tgaagaatac aaatgttcag tagaggttgg ccaagaatat attgttgagt tagagacggt
     6841 cgttttcgat gatttagata ttgagaaaag tactttacaa gctaaggaaa taactcaagt
     6901 agcagatagt tttgcatact ttatcagagg cgtttttcat ccttctagta agaaaataga
     6961 ttcagggata gagattgatt tagcagatga ggatatttct gatttttggt atttggaaaa
     7021 tcaatttgtt
//
LOCUS       DASEAA010000134         6993 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.134, whole genome shotgun sequence.
ACCESSION   DASEAA010000134 DASEAA010000000
VERSION     DASEAA010000134.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6993)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6993)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6993
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.134"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..918)
                     /locus_tag="U0342_002231"
     CDS             complement(<1..918)
                     /locus_tag="U0342_002231"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2423572.1"
                     /translation="MARNRKKAVRIDYSIIFLMMLLCIIGLVAIYVAGLVNDQYTNNF
                     LLQQSIWIVISTGVVVVIVLFFDYDKLQWAAYYLYGIGNLLLVLVLIVGDERKGSKSW
                     ISIGSLGSLQPSELMKSFLILALAKVIWDHNKKYKLHTVSLDMQLLLKIGIVSILPLG
                     LVALQPDLGTILVFIAIIIGMVFISGVTWKILLPVFSSIALIGGTLIYLVMYNQEFLQ
                     KLGFKPYQFKRITSWLRPEEDPLGDGMQLLRSMQAIGSGQLQGNGIGNQAIAIPENHN
                     DFIFSIIGGNFGFIGGCVLIMLYFLLIYQI"
     gene            complement(1060..1851)
                     /locus_tag="U0342_002232"
     CDS             complement(1060..1851)
                     /locus_tag="U0342_002232"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423573.1"
                     /translation="MKSALELKNVSFSRKRDFEMKNVSASIPEGKITTLIGPNGSGKS
                     TMLRLMMRLLTPDSGEIFLNDKNITEIPSKDLAKKMTMLSQAPEGLVDVMVHDLVAYG
                     RLPHRSWLSTLQEEDEAVIHWAIKVCNLEELAYRPLHSLSGGERQRAWLAMALAQKTP
                     ILLLDEPTTYLDIAHQLELLDLLVHLNKEYNLTIVLVLHDLNQAAIYSDHVFVCENGQ
                     LVKDGSPTEVFTTELLREVFHITADITEKDGKQHIHPLASTRFEY"
     gene            complement(1848..2858)
                     /locus_tag="U0342_002233"
     CDS             complement(1848..2858)
                     /locus_tag="U0342_002233"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465953.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2423574.1"
                     /translation="MTTVKAHDPRRKRRRITFIVVIILLILAFFYGLTTGSVKITYSD
                     AWQTLTGGGSDLANQLIWNLRLPRLLIAFLVGAALAIAGCLLQGVMRNPLADPGVIGV
                     SAGGGFVAILMTLAFPALASFVPIGAFLGAFGTAILIYLLAWDRGVSPLRVILSGVAI
                     NAFIGAMTSGVMVLYSNRVQSVISWMTGTLSGKSWYHLDMIWPYMLVGFVLSGFAIRS
                     SNVLLLGDDAAKLLGFSVERHRFFIIMLAAFLSGVAVSVAGLIGFVGLVVPHIFRLII
                     GNDYKYLLPLSALGGALLVGFADTAARSWFGSIELPVGILLAMIGAPFFLFLLQRGRV
                     AS"
     gene            complement(2858..3829)
                     /locus_tag="U0342_002234"
     CDS             complement(2858..3829)
                     /locus_tag="U0342_002234"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2423575.1"
                     /translation="MKKITILTLSITAALLLASCGNDTATDTNNETTKTENKSQAALT
                     ITDMAGRDVSFDKKPERIIALTNADMNIIYALGGTVVGRQTTDASGVPDGAKKATEVG
                     NTHDLNLEKIASLGADAIVASSEQNLKDVPAMEGVGPKVVLTGANSIDEIKKQTAVLG
                     ELLGKETKAKELEANIDQKVAEVKKKQQGKKVRSLLVLGAPGSNYAALPSSLSGNVLE
                     IAGGENVAKDFKGVENFPQYASMNVEKIVAADPEVIFLMIHGGDEKETEAAFKKEMKQ
                     NEAWNSTSAVKNDHIVVLPAELFGTNPGIKIDQALDYMTDEINKVDN"
     gene            3985..4149
                     /locus_tag="U0342_002235"
     CDS             3985..4149
                     /locus_tag="U0342_002235"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465955.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423576.1"
                     /translation="MTDNLFPNLAHENCKETMPPVTTEQFKEAAILEKNRKLEEILNI
                     VDKKKPSIKK"
     gene            4282..5040
                     /locus_tag="U0342_002236"
     CDS             4282..5040
                     /locus_tag="U0342_002236"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465956.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase family protein"
                     /protein_id="HEM2423577.1"
                     /translation="MAILELNFKSVCLAMQTSVTVILPETDALYHGSIPKYKTLYILH
                     GLSNNHTTYVRNTNIERYATEKGLAVVMPAADHSFYSNMVHGRDFFEFVSTELPHVMK
                     NWFPLSDKKEDTFIAGHSMGGYGAFKVALTFPEKFQAAASMSGVMDINYIIKEDCFEN
                     FSTRAITGEMASQTGTENDLFHLLETNLQNQVPLPALFQNCGTEDFLYEDNLRFRDFA
                     LEKNAPLEYREGPGDHDWDFWDKSIKEIIDWLPL"
     gene            complement(5080..6483)
                     /locus_tag="U0342_002237"
     CDS             complement(5080..6483)
                     /locus_tag="U0342_002237"
                     /EC_number="4.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HEM2423578.1"
                     /translation="MLYSEDDKRKQESYRIPLFGSEEESTSIPKYVLKKEPMEPRIAY
                     QLVKDQLMDEGNARQNLATFCQTYMEKEAEILMAETLEKNAIDKSEYPQTAELENRCV
                     NILADLWNAPKDMSYLGTSTVGSSEACMLGGLAMKFRWRNHAEKRGLDIQAKRPNLII
                     SSGYQVCWEKFCVYWDVDMRVVPMDKEHLSIDVDKVFDLVDEYTIGIVGILGITYTGK
                     FDDIQLLDEKVEAYNEANEHQLVIHVDGASGAMFTPFVNPELPWDFRLKNVVSINTSG
                     HKYGLVYPGVGWILWKDKEYLPKELIFEVSYLGGSMPTMAINFSRSASQIIGQYYNFL
                     RYGFEGYREIHEKTKKTALYLAKSVEKSGYFEIINDGANLPIVCYKMKEGLDVEWTLY
                     DLADQLLMKGWQVPAYPLPADLSDTIIQRFVCRADLGYNVAEEFAVDFADALHNLEHA
                     RVLYHDKERNDSYGFTH"
     gene            6610..6918
                     /locus_tag="U0342_002238"
     CDS             6610..6918
                     /locus_tag="U0342_002238"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SdpI family protein"
                     /protein_id="HEM2423579.1"
                     /translation="MFDLIFPLLLIILGVIYRVNPPKNKESRFSYRTKASLKNEISWQ
                     KAHQSLGIYWIVIGVSLLVLSLVLAFIPMHAFIRSSILLTTSIFAVLLSVILVEKKLQ
                     "
BASE COUNT         2138 a         1589 c         1160 g         2106 t
ORIGIN      
        1 tatttggtaa atcagtaaaa agtataacat aataagtaca cagccaccaa tgaaaccaaa
       61 attcccacca ataatggaga aaataaaatc attatggttt tccgggatcg caatggcttg
      121 attaccgatt ccattccctt gtaactgccc agaaccaatc gcttgcatcg accgaagtag
      181 ctgcattccg tcaccaagtg gatcctcttc cggccttaac caagaagtaa tccgtttaaa
      241 ttggtaaggt ttaaatccta gtttttgtaa gaactcttga ttatacataa ctaagtagat
      301 taatgtccca ccaatgagcg caatcgaact aaaaactggt aataaaattt tccaagtaac
      361 accactaata aataccatac cgataataat agcaataaat actagaatcg tcccaaggtc
      421 tggttgaagt gctacaagac caagcggaag aatagaaaca atacctattt ttaacagtaa
      481 ctgcatatct aagctcacgg tatgtaattt atatttttta ttatggtccc aaatgacttt
      541 tgcaagtgct aaaatcaaaa aacttttcat taattccgat ggttgcaagc tcccaagcga
      601 tccgatacta atccagctct tggatccttt tcgctcgtca ccaacgataa gtacgagtac
      661 aagcaataag tttcctatcc cataaagata atacgccgcc cattgcaact tatcatagtc
      721 gaaaaaaagt acaataacaa caacgacccc agtagaaata acaatccaaa tagactgttg
      781 caataagaaa ttatttgtat attggtcgtt aacaagcccc gcgacataaa tcgctactag
      841 accaataata cacagcaaca tcattaaaaa tataatcgaa taatctattc gaactgcctt
      901 ttttctattt ctggccatta ttttccgtcc ttttgtgttt gaatttaaat gtaaaaaagc
      961 tgctattctt aaaaagagca acagccttca tctattataa taaagtttac cttggatagg
     1021 aagctttttc accaaattct aatcttcttt ctgttttctt taatattcaa aacgagtcga
     1081 agcaagtgga tgaatatgct gctttccgtc tttttcggta atatccgccg taatatgaaa
     1141 aacctcgcga agaagctctg tcgtgaaaac ttctgtaggc gagccatctt tgactaattg
     1201 tccattttcg catacaaaaa catggtcact gtaaattgct gcctgattta aatcatgtaa
     1261 aacgagcacg atagttaaat tatattcttt atttaaatgc acgagtaaat ctaaaagctc
     1321 cagttgatgc gcaatatcta aataagtcgt gggctcatct agtaataaaa tcggtgtttt
     1381 ttgtgcaaga gccatggcga gccaagcgcg ttgtcgttct ccgcctgata acgaatgtag
     1441 cgggcgataa gccaattctt ctaagttgca cactttaata gcccagtgaa tgaccgcctc
     1501 gtcctcctct tgcaaagtgg agagccagct tcggtgcggc aaacggccat acgccactaa
     1561 atcatgcacc atcacatcta ccaaaccttc tggagcttgt gataacatcg tcattttttt
     1621 cgctaaatct ttagatggga tttcagtaat gtttttatca tttaagaaaa tctccccgct
     1681 atccggtgtc aaaaggcgca tcatcaaacg cagcatagtc gattttcccg agccgtttgg
     1741 accgataagc gtagtgattt tcccttctgg aatactcgcg ctcacgtttt tcatttcgaa
     1801 atctctttta cgtgagaaag aaacattttt tagttctaat gctgatttca tgaagcaacc
     1861 ctccctcttt gaagtaagaa taagaagaat ggtgcgccta tcattgcaag caggattcca
     1921 acaggaagct cgatggatcc gaaccaactt ctagctgctg tatcagcaaa gccaactaat
     1981 aaagccccgc cgagtgcgga tagtggcagt aagtatttat agtcatttcc aatgatcaaa
     2041 cggaaaatat gtggcacaac aagtccaaca aagccaataa gtccagctac actaaccgca
     2101 accccactga gaaaggccgc caacattata ataaaaaagc gatgccgttc cacagaaaag
     2161 ccaagtaatt tcgccgcatc atccccaagt agcaatacat tagaagaacg aatcgcaaaa
     2221 ccacttaaaa caaacccgac cagcatatac ggccaaatca tatccaaatg ataccaactt
     2281 tttccggaaa gtgtccctgt catccaagaa ataacacttt gaacccggtt gctataaagc
     2341 accattacgc cagacgtcat cgcaccaata aacgcattaa tcgccacccc agacaaaatt
     2401 acacgtaaag gagaaacacc gcgatcccat gcaagcaaat aaatcaaaat agctgttcca
     2461 aacgccccta aaaacgcacc aatcggcaca aaggaagcta acgcaggaaa tgctaatgtc
     2521 attaaaatgg ccacgaagcc accaccggct gaaaccccaa ttacgcctgg gtcagctaat
     2581 ggattccgca tcacgccttg cagcaagcat ccagcaatcg ccagcgctgc tcctactaag
     2641 aaagcaatta ataaccgcgg caagcgcaag ttccaaatca attggttcgc taggtcactt
     2701 cccccgccag ttagcgtctg ccaagcatca ctatatgtaa ttttcacgga ccccgttgtc
     2761 agtccgtaga aaaaagctaa aataagtaaa atgattacta caataaaagt tatccgtcta
     2821 cgttttcgcc gcggatcatg cgccttcaca gttgtcatta gttatccacc ttatttatct
     2881 catctgtcat ataatccaat gcttgatcaa tcttaattcc aggatttgtt ccgaatagct
     2941 ctgcaggaag tacgacaata tgatcatttt taacggcgct tgttgaattc caagcttcat
     3001 tttgtttcat ttctttcttg aatgctgctt ctgtttcttt ttcgtcccca ccgtgaatca
     3061 ttaagaaaat cacttccggg tcagcagcaa caatcttttc tacgttcatc gaagcgtatt
     3121 gtgggaagtt ttcaacgcct ttaaaatctt tcgctacatt ttctccacca gcaatttcta
     3181 aaacatttcc acttaatgag gatggtagcg ccgcgtaatt actgccagga gcccctagaa
     3241 caagtaatga gcgcactttt ttaccttgtt gcttcttctt cacttccgcc actttttggt
     3301 caatattcgc ttctaactct ttggcttttg tctctttgcc taaaagctcg ccaagcacgg
     3361 ctgtttgttt tttaatttcg tcaattgagt tggctccggt caacacgact ttcggtccga
     3421 cgccttccat cgcaggaaca tcttttaagt tttgttctga acttgcgaca atagcatcag
     3481 caccaagaga ggcaattttt tctaaattca aatcatgggt attgcccact tctgtagctt
     3541 tcttcgcacc atctggaaca ccactcgcgt ctgttgtttg gcgacctacc accgttccac
     3601 caagtgcata gataatattc atatccgcat tcgtcagtgc gataatccgt tctggttttt
     3661 tatcaaaaga aacatcacgc ccagccatat ctgttatcgt tagagccgct tgcgatttat
     3721 tttccgtttt agttgtttca ttattcgtat cagttgccgt atcatttcca cacgatgcaa
     3781 ggagtagtgc ggctgttata cttaacgtca atatagttat tttcttcata attcccctcc
     3841 acaacactgt ccttttcatt ttactaaatt ataacacgat attcaaaaag acgaacccct
     3901 aattgagaat tattttcatt tatgttcaaa tagtcgatat ttctcagccg atactttata
     3961 attaacttaa ggaggcgatg aaaaatgacc gataatcttt ttcctaatct agcgcatgaa
     4021 aattgcaaag aaacgatgcc cccagtcaca acagaacaat tcaaagaagc agccattctc
     4081 gaaaagaatc gcaaactcga agaaatctta aacatcgttg ataaaaagaa accaagtatt
     4141 aaaaaataac gaggacctgt tcgcgcaggt tctttatttt acatttaatt ccgagttaac
     4201 tcataagata agttatattt attttatttc gctcaaaaat catgtatact agaaaaaaag
     4261 acacgtcagg aggcccctac attggctatt ttagaactta atttcaaatc agtttgttta
     4321 gctatgcaaa caagtgtaac ggtgattttg cccgaaacag atgcacttta tcatggctca
     4381 attccgaaat ataaaacatt atatattctt cacggtttgt cgaataacca cactacttat
     4441 gtacgcaata caaatatcga acgctatgcc actgaaaaag ggctcgctgt tgtcatgccc
     4501 gcagcagatc atagctttta ttctaacatg gttcatggtc gcgacttttt tgagtttgtt
     4561 agtacggaac tgccgcacgt tatgaaaaac tggttcccac tttcagataa aaaagaagat
     4621 acttttatag ctggtcattc catgggaggt tacggtgcgt tcaaggttgc acttactttt
     4681 ccagaaaaat tccaagccgc ggccagtatg tccggcgtca tggatattaa ttatatcatt
     4741 aaagaagact gcttcgaaaa tttcagcacg cgtgccatca cgggtgaaat ggctagccaa
     4801 actggtacgg aaaatgattt atttcattta ttagaaacta atctccaaaa ccaagtgcca
     4861 ttaccagccc ttttccaaaa ttgtggcacg gaagattttc tatatgaaga taatcttcgt
     4921 ttccgagatt ttgcgcttga gaaaaatgct ccgctagagt atcgcgaagg ccccggtgac
     4981 catgattggg atttttggga taagagtatc aaagaaatta tcgactggct tccactttaa
     5041 taaaaagaag actcggactc accatccaag tcttcttttt tagtgcgtaa atccgtatga
     5101 gtcgttgcgt tctttgtcat gatacagcac tctagcatgt tccagattat gaagcgcgtc
     5161 tgcaaaatca accgcaaact cttcagccac gttatagcct aagtccgccc gacaaacaaa
     5221 ccgttgaata atcgtatcac ttaaatcggc cggaagtgga taggctggaa cttgccatcc
     5281 tttcattaaa agctgatcag ccaagtcata tagcgtccac tctacatcca gtccttcttt
     5341 cattttgtaa caaacaatcg gtaaattagc gccatcatta ataatttcaa agtagccact
     5401 tttttctaca ctttttgcca agtaaagggc tgttttcttt gttttttcat gaatttctcg
     5461 gtaaccttca aaaccatatc gtaaaaaatt ataatattga ccaataattt gactggcact
     5521 acgagagaag ttaatcgcca tcgtcggcat cgaaccacct aagtagctga cttcaaatat
     5581 aagctctttt ggtaaatatt ctttgtcttt ccataaaatc caaccaacgc caggataaac
     5641 caatccgtat ttatgaccgg aagtatttat agaaacaaca tttttaaggc ggaaatccca
     5701 aggtaattcc ggatttacaa atggtgtaaa catcgcgcca cttgctccgt caacatgaat
     5761 gactaattga tgctcgttcg cttcattata tgcttctact ttttcatcta ataattgaat
     5821 atcatcaaat ttaccagtat aagtaatgcc taaaatcccg acaatcccaa ttgtgtattc
     5881 atcaaccaaa tcaaacactt tatctacatc gatactgaga tgctctttat ccattggcac
     5941 aacacgcata tctacatccc agtacacaca gaatttttcc caacatactt ggtagcctga
     6001 tgaaataatt aagttcggtc gtttcgcttg aatatctaga cctcgttttt ccgcatggtt
     6061 acgccagcga aatttcattg ccaaaccgcc aagcatacac gcttccgaag agcctactgt
     6121 cgaagtcccc aagtaagaca tatcttttgg agcattccac aaatcggcta aaatattgac
     6181 gcagcgattt tccagttcag ctgtttgcgg atattcggat ttatcaattg catttttctc
     6241 gagcgtttct gccatcagta tttctgcctc tttttccatg tatgtctgac aaaaagttgc
     6301 taagttttgc cgcgcatttc cctcatccat caactggtct ttcactagtt ggtacgcaat
     6361 acgtggttcc atcggttcct tttttaatac atatttcggg atactcgtgc tttcttcctc
     6421 agatccaaag agtgggattc gataactttc ctgttttcgc ttgtcgtctt cactataaag
     6481 catctttttt cctcctttaa aataactgat caccttctct caccaatacc cattaaacct
     6541 tagagacaaa ccgttcaatt tttcacaata atttgttata ctacgatggt acttataagg
     6601 aggttcgtta tgtttgattt aatctttcca cttttactta ttattctcgg tgtcatctac
     6661 cgggtgaatc cacctaaaaa taaagaaagt cgctttagtt atcgaacgaa agcatcttta
     6721 aaaaatgaaa tctcttggca aaaagcgcat caatctctag gaatctactg gatagttatc
     6781 ggggtttctc ttctagtttt gtcacttgta cttgctttta tcccgatgca tgcctttatt
     6841 cgtagctcga ttttattaac aacaagtatt tttgccgtat tactttctgt cattttagta
     6901 gaaaaaaaac tacaataaaa aagcaccgcg ctaagcagta cttttctgta atccattaca
     6961 tataagtcca aaaaaatttt actcttcttt tat
//
LOCUS       DASEAA010000135         6980 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.135, whole genome shotgun sequence.
ACCESSION   DASEAA010000135 DASEAA010000000
VERSION     DASEAA010000135.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6980)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6980)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6980
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.135"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..432
                     /locus_tag="U0342_002239"
     CDS             <1..432
                     /locus_tag="U0342_002239"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEM2423580.1"
                     /translation="FISYTYYEDLAPHLTFIPYPGSDTADGLSIILQELRTETAYYNV
                     LGFAIIFIVAIIVVHMLASLVGGLTKIPVLRQINGLLAAVFGVVKSYLIIFVVLFIMA
                     IYPANWSENLIDSSTVAQWMLENTPILSEQFYDWMTDILPK"
     gene            524..2236
                     /gene="polX"
                     /locus_tag="U0342_002240"
     CDS             524..2236
                     /gene="polX"
                     /locus_tag="U0342_002240"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase/3'-5' exonuclease PolX"
                     /protein_id="HEM2423581.1"
                     /translation="MATNKKEIIRLLEEIATYMELKGENSFKISAFRKAAQAIELDSR
                     SLSEIDDFTKISGIGKTTGEIIQRYLDSGECPELEALKKEVPAGLVPLLDVPGLGGKK
                     LSRLYHELGVVDKDTLLQEAENGHIEALKGFGKKSAEKMAEAVREMGERPDRYPLNDV
                     LPIIQKVEAYLADIAPIETFAQAGSLRRLRETVKDLDYVIATEKPEEVQKALLAFPLI
                     TDVIGAGETKVSAVLEDNITISVDFRLVEKKAFATTLHHFTGSKDHNIKMRQLAKQSN
                     EKISEYGVEQEDGSVRHFESEKAFFEHFKIPFLPPEVRRDGTEIERVTKDTKFLELSD
                     IRGDLHMHTTWSDGAYAIPEMIEACIAKGYEYMVITDHGKFLRVANGLDEKRLLEQQA
                     EIKKIAANYPEIDVYSGVEMDILADGSLDFDDETLKQLDFVIASIHSSFQQSEEEIMK
                     RLKTACENPYVRLIAHPTGRIVVKRKPYHVNMKELIQLAKNTGTALELNANPQRLDLN
                     REHLEMAHAAGVPIAINTDAHDTKHLDFMSIGVRAATKAWLDKSAILNTKTAAEFKHF
                     LQNK"
     gene            2259..4616
                     /locus_tag="U0342_002241"
     CDS             2259..4616
                     /locus_tag="U0342_002241"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease MutS2"
                     /protein_id="HEM2423582.1"
                     /translation="MEKKVEAILEFDKIKKQLTEFASSSLGEQAILELAPATDFQVVQ
                     KTQLETEEGAKIIRLRGSAPITGLTDVFAHLKRLEIGGDLNGLEIYQIGSNLRVSRQM
                     KNFMNDLLEIGVELPLLGALSDELLVLKEVEEDIAISVDESGKVLDTASEALSTIRRT
                     LRRTEDRVREKLESYLRDRNASKMLSDAVITIRNDRYVIPVKQEYKGHYGGIVHDQSA
                     SGQTLFIEPQSVVDLNNERKALQAKEKQEIERILAEISASLAAWINEIHHNTFILGRF
                     DFIFAKARFGKAMKAVTPHLSDAGVVHLIAARHPLLDAAKVVANDIYLGEDFTTIVIT
                     GPNTGGKTITLKTLGLLTLMAQSGLQIPAQEDSTIAVFEHVFADIGDEQSIEQSLSTF
                     SSHMTNIVSILGNVNQKSLILYDELGAGTDPQEGAALAIAILDASHAKGASVVATTHY
                     PELKAYGYNRVHATNASVEFNVETLSPTYKLLIGVPGRSNAFDISRRLGLSENIITEA
                     RSLVDTESADLNDMISSLEEKRNLAETEYEEARELARGADNLLKDLQKEISNYYQQKD
                     KLIEQASEKAATIVEKAEAEAEEIIHELRTMQLNGAAGIKEHELIDAKTRLGNAKPKT
                     INKTIPQAPKQKPHVFQEGDNVRVLSLGQKGTLLNKISDKEWNVQIGIIKMKIKTTDL
                     EYIQPEKPKKQRIITSVHSSGSPAKSELDLRGERYEDALQKVDKYLDEALLAGYPQVA
                     IIHGKGTGALRTGVTEYLKNHRMVKSIRFGAAAEGGNGVTIVEFK"
     gene            4697..5008
                     /gene="trxA"
                     /locus_tag="U0342_002242"
     CDS             4697..5008
                     /gene="trxA"
                     /locus_tag="U0342_002242"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin"
                     /protein_id="HEM2423583.1"
                     /translation="MVKEITDATFEQETSEGLVLTDFWATWCGPCRMVAPVLEEIQEE
                     RGEALKIVKMDVDENPETPGSFGVMSIPTLLIKKDGEVVETIIGYRPKEELDEVINKY
                     V"
     gene            5084..6895
                     /gene="uvrC"
                     /locus_tag="U0342_002243"
     CDS             5084..6895
                     /gene="uvrC"
                     /locus_tag="U0342_002243"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="excinuclease ABC subunit UvrC"
                     /protein_id="HEM2423584.1"
                     /translation="MSSEHIQNKLALLPDQPGCYLMKDRQGTIIYVGKAKILKNRVRS
                     YFSGTHDSKTQRLVQEIVDFEYIVTSSNVEALLLEINLIKKHDPRFNIRLKDDKTYPF
                     IKITNERHPRLIITRQVKKDKGKYFGPYPNVYAANEVKRILDRLYPLRKCSTLPNKVC
                     LYYHLGQCLAPCVFDVEASKYKEMQDEIVAFLNGGYKTVKNDLMKKMQEAAENMEFEK
                     AGEFRDQINAIETTMEKQKMTMNDFVDRDVFGYAIDKGWMCVQVFFIRQGKLIERDVS
                     QFPFYNDADEDFLTFIGQFYQKANHIPPKEIYLPDDVDSEAVQAVVPDTKIIVPQRGN
                     KKDLVKLAYKNAKIALNEKFMLLERNEERTVGAVERLGEAMGIPTPSRVEAFDNSNIH
                     GTDPVSAMVTFLDGKPSKNDYRKYKIKTVEGPDDYATMREVIRRRYWRVLKEELPMPD
                     LILIDGGKGQIDSAKDVLTNELGLDIPVAGLAKDDKHRTSQLLFGDLLEIVPLERNSQ
                     EFYLLQRMQDEVHRFAITFHRQLRSKTGFQSILDGIPGVGPGRKKKLLKHFGSMKKLK
                     EASVEEIKEAGVPLNVAEEVHKHITAFNEKAKNTEQK"
BASE COUNT         2415 a         1317 c         1430 g         1818 t
ORIGIN      
        1 tttatctcgt atacgtatta cgaagattta gcgccacatt taacgtttat accttatcca
       61 ggtagtgata ctgcagatgg attatccatt attttacaag aattacgaac agaaacggcc
      121 tattataacg tacttggatt tgcgattatt tttattgtcg caatcattgt cgttcatatg
      181 cttgcatcac ttgttggtgg cttgactaag attccagtcc tgcgccaaat taatggattg
      241 ttagcagctg tttttggtgt tgttaagtcc tacttaatta tttttgttgt cttgttcatc
      301 atggcaattt acccggcgaa ttggtctgaa aaccttattg atagctcaac ggttgcccag
      361 tggatgcttg aaaacacgcc aattttatcc gaacaatttt atgactggat gacagacatt
      421 ctgccaaaat aaaagaaaca ttcgatacca gatgtatact cttagccaat tttggatagg
      481 atttctctgg tattttttaa tgattttaca gggaggaata aagatggcta ctaataaaaa
      541 agaaattatt cgtttactcg aagaaattgc cacttatatg gaattaaaag gagaaaatag
      601 ctttaaaata tctgctttcc gcaaagctgc acaagcaatt gaattagata gtagaagttt
      661 atctgaaatt gatgatttta cgaagattag tggcatcgga aaaacaacgg gcgaaattat
      721 ccaacgttat ttagatagcg gagaatgtcc agaacttgag gcgcttaaaa aagaagtacc
      781 agctggtctt gttccacttt tagatgtgcc agggctagga ggcaagaaat tatcgcgtct
      841 ttatcatgag cttggtgtgg tggataaaga tacattactc caagaagcag aaaatggcca
      901 tatcgaagca ttgaaaggtt ttggtaaaaa gtctgctgaa aaaatggccg aagcagtgcg
      961 cgaaatgggt gagcgccctg atagatatcc gctaaatgat gttttaccaa tcattcaaaa
     1021 agtagaagct tatcttgcgg atattgctcc aatcgaaact tttgctcaag ctggaagtct
     1081 acgcagattg cgggaaacgg tgaaagattt agattatgtt attgcgacgg aaaaaccaga
     1141 agaagttcaa aaagcattac tggcatttcc attaattacg gacgttattg gagctggtga
     1201 aacaaaagta tcagctgtat tagaagataa tattaccatt tccgtggatt tccgtttagt
     1261 agaaaagaaa gcttttgcaa cgacactaca tcattttacg ggttctaaag atcacaacat
     1321 caaaatgcgc caattagcta aacaatccaa tgaaaaaata agtgagtatg gagtcgagca
     1381 agaagatgga agtgttcgtc actttgaatc ggaaaaagca tttttcgagc attttaagat
     1441 tccgtttctc ccacctgaag ttcgccgaga tggtacagaa attgagcgcg tgacgaaaga
     1501 tacaaaattc cttgagttaa gcgatattcg cggggacttg cacatgcata caacttggtc
     1561 ggacggagcc tacgcgattc cagaaatgat tgaagcatgt atcgcaaaag gatatgaata
     1621 catggttatt acagatcacg ggaaattttt gcgagtagct aatggtctgg acgaaaaaag
     1681 attattggag cagcaagcag aaattaaaaa aatagcagct aattatccgg aaattgatgt
     1741 ttattccggc gttgaaatgg atattctggc agatgggtcg cttgattttg atgatgagac
     1801 tttgaagcag ttggattttg ttatcgcatc catccattcc agtttccaac aatcagaaga
     1861 agaaattatg aagcgattaa aaacggcctg tgaaaatcca tatgtgcgtc tgattgcgca
     1921 tccgacaggt agaattgtcg tgaaaagaaa gccatatcat gttaatatga aagaactaat
     1981 ccagttagcg aaaaatacag gaactgccct agaattaaat gccaatccgc aacgtcttga
     2041 tttaaaccgt gagcatttag aaatggcaca cgctgccggg gtaccgattg cgattaacac
     2101 agatgcgcac gacacgaagc accttgattt catgtctatt ggcgttcgag ctgctacaaa
     2161 agcctggctc gacaaatcgg ccattctaaa tacgaaaaca gcagctgaat ttaaacattt
     2221 tttacagaat aaataacttt taaaaagaag gatgactaat ggaaaaaaaa gtagaagcca
     2281 ttttagaatt tgataaaata aaaaaacaac tcaccgaatt tgcttcttcg tcactggggg
     2341 agcaagcgat tttggaactc gctccagcaa ctgattttca agtagttcaa aaaacgcaac
     2401 ttgaaacaga agaaggagcc aagattattc gtttacgggg aagtgcgcca attactggtc
     2461 taacagatgt ttttgcacat ttgaaacgtt tagagattgg tggcgattta aacgggctag
     2521 aaatttacca aataggtagt aacttgcgcg ttagccgtca aatgaagaat tttatgaacg
     2581 atttactgga aatcggtgtc gaattgcctt tactcggcgc cctttcggat gaacttttag
     2641 tactaaaaga agtagaagag gatattgcga tttcagtaga tgaaagcggg aaagtgttag
     2701 atactgcgag tgaagcgctt agtacgattc gccgaacact ccgccgtacc gaagaccgcg
     2761 tacgtgaaaa actagaatct tatttgcgcg atcgtaatgc ctctaaaatg ttaagcgatg
     2821 cggttattac gattcgaaat gatcgttatg ttatcccagt taaacaagaa tacaaaggtc
     2881 attatggtgg tatcgttcat gaccagtctg cttccggtca aacgcttttc atcgagccac
     2941 aaagtgtagt ggatttaaac aacgaacgaa aagcacttca agcaaaggaa aaacaagaaa
     3001 tagaacgcat tcttgctgaa atttctgctt cactagctgc ttggattaat gaaattcatc
     3061 ataatacttt catcctcggg cgctttgatt ttattttcgc caaagcacgt ttcggaaaag
     3121 cgatgaaagc tgtaacgccg catttgagtg atgctggtgt cgtccattta atcgccgcac
     3181 gccacccgct tttagacgct gcgaaagttg tagcgaatga tatttattta ggcgaagatt
     3241 tcactaccat cgttatcacc ggtccaaata caggtggtaa aacaattacc ctgaaaacat
     3301 tgggattact aacactcatg gcacaatctg gacttcaaat tcccgcgcaa gaagattcta
     3361 ctatcgctgt ttttgagcat gtatttgccg atattggtga cgaacaatcc atcgaacaaa
     3421 gtttaagtac gttctcatct cacatgacga atattgtttc cattttggga aatgttaatc
     3481 agaaatcgct tattttgtac gatgaactcg gagcgggaac agacccacaa gaaggtgcgg
     3541 ctttagcaat cgccattctt gatgcaagcc atgcaaaagg tgcaagtgtt gttgcgacga
     3601 cccattatcc ggaactaaaa gcatatggat ataatcgcgt tcacgcaacc aatgcatctg
     3661 ttgagttcaa tgtcgaaaca cttagcccaa cttataaatt attaatcggt gtacccggtc
     3721 gaagtaatgc ttttgatatt tcacgccgct taggattaag cgaaaatatt atcactgaag
     3781 caagaagcct tgtcgatacc gaaagtgccg atttaaatga tatgatttcc agcctagaag
     3841 agaaacggaa cttagcggaa accgagtatg aggaagcacg tgaattagct cgcggggctg
     3901 ataacctttt aaaagattta caaaaagaaa tcagcaacta ctatcaacaa aaagataaat
     3961 taatcgaaca agcgagtgaa aaagcagcaa ctattgtgga aaaagccgaa gccgaggccg
     4021 aagaaatcat ccacgaattg cgcaccatgc aattaaacgg agcagcagga atcaaagaac
     4081 atgaacttat cgatgccaaa acaagacttg ggaatgctaa accaaaaaca ataaacaaaa
     4141 ccatcccaca agcgccaaaa caaaaaccac atgtattcca agaaggcgac aatgttcgtg
     4201 tcctctccct tggccaaaaa ggcacacttt taaataaaat tagcgataaa gaatggaacg
     4261 tccaaatcgg catcatcaaa atgaaaatca aaactactga cttagaatac attcaaccag
     4321 aaaaaccaaa aaaacaacgt atcatcacat ctgttcatag tagtggttca ccagctaaaa
     4381 gcgaactcga tttacgcggc gaacgatatg aagacgcgct acaaaaagtc gacaaatatc
     4441 tagatgaagc actactcgca ggatatcctc aagttgccat tatacacggt aaaggaactg
     4501 gtgcccttag aaccggggtc acagaatatc tgaaaaacca ccgcatggtc aaatcaatcc
     4561 gttttggcgc agcagcagaa ggcggaaatg gcgtaacgat tgttgagttc aagtaaacaa
     4621 ctgagcaaaa acatggctcc aaataggtct aggtgctata ctgtgtgtac gaaagtcata
     4681 aggagtgaat taaatcatgg taaaagaaat tacagatgca acatttgaac aagaaactag
     4741 tgaaggctta gtattaacag atttctgggc aacatggtgt ggtccttgcc gcatggtggc
     4801 tccagtttta gaagaaatac aagaagaacg cggcgaagca cttaaaatcg tcaaaatgga
     4861 cgtagatgaa aacccagaaa caccaggaag ctttggtgtg atgagtattc caacacttct
     4921 tatcaaaaaa gacggcgaag tagtagaaac aattatcggc taccgtccaa aagaagaact
     4981 ggatgaagtc atcaacaaat acgtttaaaa ttatgctaaa atgaaagaag cttagaacaa
     5041 acattctaag cttcttttta aatgtgtaac tggagttgat aaaatgtctt ctgaacatat
     5101 ccaaaataaa ctagcgcttc tgccggacca acctggttgt tatttgatga aagatagaca
     5161 aggaaccatt atttatgttg ggaaagcaaa aattttaaaa aatcgtgttc gatcctattt
     5221 ttcaggaaca cacgatagta aaacgcaacg cttagttcaa gaaattgtgg actttgaata
     5281 tatcgtaaca tcatccaacg tagaagcctt gctactagaa atcaatttga tcaaaaaaca
     5341 tgatcctcgt tttaatattc gcctaaaaga tgataaaact tatccgttta ttaaaatcac
     5401 gaacgaacga catccacgcc taattattac ccgtcaagta aaaaaagaca aagggaaata
     5461 ttttggtcca tatccaaatg tgtatgctgc taatgaagta aaacgtattt tagatcgact
     5521 gtatccatta cgtaaatgca gtacgctacc aaataaagtg tgtttgtact atcacctcgg
     5581 acaatgcctt gccccgtgtg tatttgacgt ggaagcaagt aagtataaag aaatgcaaga
     5641 cgagatagtc gcattcctaa atggcggcta taaaactgtc aaaaatgatt taatgaagaa
     5701 aatgcaagaa gcagctgaaa atatggaatt cgaaaaagcg ggtgaattcc gcgaccaaat
     5761 caacgcaatc gaaacaacaa tggaaaaaca aaaaatgacg atgaacgatt tcgttgaccg
     5821 tgatgtcttt ggttatgcca ttgataaagg ctggatgtgc gtccaagtat tcttcattcg
     5881 tcaagggaaa ctaattgagc gcgatgtctc ccagtttcca ttttataatg atgcagatga
     5941 agatttcctc acatttattg gtcaatttta ccaaaaagcc aatcatattc cgcctaaaga
     6001 aatttattta ccagatgatg tcgatagcga agccgttcaa gcggtcgttc ctgacacaaa
     6061 aatcatcgta ccacaacgcg gaaataagaa agatctcgta aaacttgcat acaaaaatgc
     6121 gaaaattgcc ttaaacgaaa aatttatgct acttgaacgt aatgaagaac gcacagtcgg
     6181 agcagttgaa cggcttggag aagcaatggg aatcccaaca ccgtcacgcg tcgaagcttt
     6241 cgataactcg aatattcacg gtacagaccc agtttccgcg atggtcacat tcctcgatgg
     6301 caaaccaagt aaaaatgatt accgtaaata caaaatcaaa accgtagaag gacctgatga
     6361 ttacgcaaca atgcgcgaag ttattcgacg tcgttactgg agagtactta aagaagaact
     6421 accaatgccg gatttaatct taattgatgg tggtaaaggg caaattgata gtgccaaaga
     6481 tgtcctaacg aatgagctag gcttagatat tccagtagca ggacttgcaa aagacgacaa
     6541 acaccgtact agccaactat tattcggtga cctacttgaa atagtcccac tcgaacgaaa
     6601 cagccaagaa ttctacctat tacaacgaat gcaagatgaa gtccaccgtt tcgctattac
     6661 attccaccgc caacttcgca gcaaaacagg cttccaatcc attcttgacg gcatcccagg
     6721 agtaggaccc ggtcgcaaga aaaaattact taaacacttc ggctccatga aaaaattaaa
     6781 agaagcatcg gtagaagaaa ttaaagaagc cggtgtccct ttgaatgttg cagaagaagt
     6841 gcataaacac atcacagcat tcaatgaaaa agcaaaaaat accgagcaaa aatgattttc
     6901 aacacgattt taaacgccaa taactttgat gttattggcg ttttattgca taaaaattgt
     6961 tactaacatg tcagattaaa
//
LOCUS       DASEAA010000136         6930 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.136, whole genome shotgun sequence.
ACCESSION   DASEAA010000136 DASEAA010000000
VERSION     DASEAA010000136.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6930
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.136"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(22..1290)
                     /locus_tag="U0342_002244"
     CDS             complement(22..1290)
                     /locus_tag="U0342_002244"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463703.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HEM2423585.1"
                     /translation="MIMNANLEVNAEVVKESYVYLLSRYLVLRQENFDTKEDKIPYNT
                     LKHNSISPADANFVNPNFDVVYSEAWIAVDDENAVILEVPEIKNRYYTVQLLDGWGEV
                     VTNINERNYPEHPHGKFAFVKKGTNPSVPSDAVKIELPSEKVKVLLRVEQKDDPEGAV
                     KLQKAFKFDAPDNIKIKEPLEIPHFTNAEFLLEEIYSNLEELLATYPDKMPRATEFQD
                     KARQVAAYIELGDEQKAEVRNLIVKEAIPYFTNGAKGFGTQKGGWSVTYVAGAFENDI
                     LARAIINYGGIWANSIQEALYFIGQKGTDNELLTGDKVYKIHFPADELPSELADAFWS
                     VTLYSVPDYHVIPNKLNKFCINNYSGPKLSEDGSLTLYIASEKPADVDPGNWLPSKAG
                     KEFSLNFRLYVPKKEVLEGKVFLPPLEVIK"
     gene            complement(1352..2209)
                     /locus_tag="U0342_002245"
     CDS             complement(1352..2209)
                     /locus_tag="U0342_002245"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463702.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GRP family sugar transporter"
                     /protein_id="HEM2423586.1"
                     /translation="MNIVIALIPAVMWGIMPLVVSKIGGKPRQQIIGTTFGALAFAIG
                     VFIFTNPEYTATIIIASFISGAFWSLGQMNQFRAFTQVGVSKTMPLSTGMQLVGTSLF
                     GVFAFHEWGTTSKLVLGFSALALIIIGIFLTSYQQHKDENSGQNMKKGIITLLISSVG
                     YVGYVVITRWFDISGWDAILPQAIGMVVAGLLFSIKSEEKRFTKQTWLNMIPGVMWAT
                     GNLALLFSNKLVGIATGFSLSQMGVVISTIGGILFLGEKKTKKELILVIIGVVLVIIG
                     GTMIGIAKS"
     gene            2323..2607
                     /locus_tag="U0342_002246"
     CDS             2323..2607
                     /locus_tag="U0342_002246"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463701.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AbrB/MazE/SpoVT family DNA-binding
                     domain-containing protein"
                     /protein_id="HEM2423587.1"
                     /translation="MKSTGMVRKIDELGRVVIPIEIRRTMNLNVKDPLEIFTDEDAIV
                     LKKYSAGLVCDVTGEFSVDNKKFVDGKLTLSKEGAAELMEEIKRRFGDTL"
     gene            complement(2652..3533)
                     /gene="rsmI"
                     /locus_tag="U0342_002247"
     CDS             complement(2652..3533)
                     /gene="rsmI"
                     /locus_tag="U0342_002247"
                     /EC_number="2.1.1.198"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463700.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="16S rRNA
                     (cytidine(1402)-2'-O)-methyltransferase"
                     /protein_id="HEM2423588.1"
                     /translation="MIKSQKSFSGASQGALYLVPTPIGNLEDMTFRAIRMLKEADIIA
                     AEDTRNTVKLLNHFEITTRMTSYHQFTKENKEDNIIQRMLDGEVVALVSDAGMPSISD
                     PGYELVQSALNANIPVIPLPGANAALTALIASGLAPQPFYFYGFLPRQNKERTQAIEK
                     LAAREETWILYESPHRLKETLKAIIKITGNDRKIVLCRELTKRFEEFLRGTVEDALNW
                     AMDEEVRGEFCLIIEGNANPPLAEEQLWWQELDIKTHVSTIMEQENVSSKDAIKTVMK
                     ARNLPKREVYSAYHEIK"
     gene            complement(3530..3799)
                     /locus_tag="U0342_002248"
     CDS             complement(3530..3799)
                     /locus_tag="U0342_002248"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463699.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM2423589.1"
                     /translation="MAKASEHFFYVLKCSDNSYYGGYTTDVIRREAEHNAGIRCKYTK
                     TRRPVKVIHFEKFETRSEATKAEAAFKKLSRKNKDAYLIQREESE"
     gene            complement(3783..4535)
                     /locus_tag="U0342_002249"
     CDS             complement(3783..4535)
                     /locus_tag="U0342_002249"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463698.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA1(Val) (adenine(37)-N6)-methyltransferase"
                     /protein_id="HEM2423590.1"
                     /translation="MEKLELIGDERLDYLLAENLRIIQSPSVFSFSIDAVLLAKFSYL
                     PIRKGKIIDLCSGNGIIPLLLSTRTKAKIVGVEIQERLADMAKRSVAYNQLEDQIEII
                     EYDLKKITDLIPKERADIVTCNPPYFATPDTSLKNTNEHFRIARHEVMCTLEDTIRVA
                     ASLLKQGGKANFVHRPERLLDIIDIMRKYRLEPKRIQFVHPRSDREANTVLVEGIKDG
                     KPGVKYVPPVIVYDELGEYTPVIKEILYGESE"
     gene            complement(4593..4982)
                     /gene="yabA"
                     /locus_tag="U0342_002250"
     CDS             complement(4593..4982)
                     /gene="yabA"
                     /locus_tag="U0342_002250"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463697.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA replication initiation control protein YabA"
                     /protein_id="HEM2423591.1"
                     /translation="MDKKAIFDSVSNMEEQIGELYQQLGDLKTNLGEMLEENNRLNLE
                     NEHLRRRLSLTDEATPEPKAEIEAEHGVMAPNRKEAMQQMIELGEGYDNLVQLYKEGF
                     HVCNVHFGSPRGNDEDCLFCLSLLNKK"
     gene            complement(4993..5826)
                     /locus_tag="U0342_002251"
     CDS             complement(4993..5826)
                     /locus_tag="U0342_002251"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463696.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="stage 0 sporulation family protein"
                     /protein_id="HEM2423592.1"
                     /translation="MLKIVGVRFKDVGKIYYFSPGELEITENQGVIVENAQGIEFGKT
                     VIEPRYVDEEDVVLPLKKVLRIATEADYKCVAENGDSCQKAFLLCDEKIRERELEMSL
                     VDVDYTFDRNKIIFYFTAEGRVDFRELVKDLASVFRTRIELRQIGVRDEAKLLGGIGP
                     CGRMLCCSTFLGDFEPVSIKMAKDQNLSLNPTKISGLCGRLMCCLKYENDEYEQAKRE
                     MPDVGVKVKTPEGIEARVSGINLLSRILQVSLPEEETVIEYELDELRPYNEFLKQPAK
                     S"
     gene            complement(5832..6824)
                     /gene="holB"
                     /locus_tag="U0342_002252"
     CDS             complement(5832..6824)
                     /gene="holB"
                     /locus_tag="U0342_002252"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463695.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta'"
                     /protein_id="HEM2423593.1"
                     /translation="MGLQDELTVMQPVVMKIFSKSVRENRLSHGYLFEGARGTGKKRT
                     ALWLAQSLFCLESTETELACGKCANCTRIASHNHPDVHLLEPDGASIKIDQVRALKQE
                     LSKRGMESDQKVVIIYDAEKMTVQSANSLLKFIEEPEGGLLLLFLTTNPGQILPTIQS
                     RLQPVTFKSLTFDSLLASLTAAGISEQKARIYASITGSVEEAKAFEESEWFSEARNVV
                     IKLYEGIHHQGTSPLIIIQESWMPLFKEKDKMALGLELLLLLYRDRLHLTLDENYEPI
                     CTAQKEMLGQDALRKSLSETTGEIEKILAAKSKLDSNMNTQLLMEQLVLEIQGR"
BASE COUNT         1939 a         1466 c         1214 g         2311 t
ORIGIN      
        1 tgcatactta gctttttagg tttattttat aacttccagc ggtggtaaga atactttccc
       61 ttccaacact tcttttttcg gaacatatag tcggaaattt agtgaaaact cttttccagc
      121 cttgcttggt agccagtttc ccggatctac atcagctggt ttttctgacg caatgtagag
      181 cgtcaagctg ccatcttcac ttagttttgg acctgagtaa ttattgatgc agaatttgtt
      241 taatttattt gggataacgt ggtaatctgg aacactgtat aaggtaacgg accaaaaagc
      301 atctgccagt tctgatggaa gttcatctgc cggaaaatgg attttataaa ctttatcgcc
      361 agttaataac tcattatccg tacctttttg accgatgaag tatagtgctt cttgaataga
      421 attcgcccaa ataccgccgt aattaatgat tgctcgcgct aaaatatcat tttcgaacgc
      481 gccagctacg taagtaacag accatccgcc tttttgtgta ccaaatcctt ttgcaccatt
      541 tgtaaaatat ggaatggctt ctttcacaat taagtttctt acttcagctt tttgctcatc
      601 accaagctcg atataggctg ccacttgtct tgctttatct tggaattcag ttgctcttgg
      661 cattttatct ggataagttg ctagtagttc ttccaaattg gaataaattt cttctaataa
      721 gaactctgca ttagtgaaat gtggaatctc aagtggttct ttgattttta tattgtctgg
      781 tgcatcgaat ttgaatgctt tttgaagttt tactgcacct tcaggatcgt ctttttgttc
      841 tacgcgaaga agtactttta ctttctctga tggtaattcg atttttacag cgtcacttgg
      901 aacggaagga tttgttcctt ttttaacgaa agcaaatttt ccatgtggat gctctggata
      961 gttacgttca ttgatatttg ttaccacttc gccccagccg tctaaaagtt gcacagtata
     1021 gtagcgattt ttaatttctg gtacttctaa aataacggca ttttcgtcat ctacagctat
     1081 ccaagcttct gaataaacca catcaaagtt cggatttaca aaatttgcat ctgctggtga
     1141 aatcgaattg tgcttaagtg tgttatatgg aattttatct tcttttgtat caaaattttc
     1201 ttggcgtaaa acgagatatc gcgataataa ataaacatag gattctttta caacctcagc
     1261 atttacttct aaattcgcat tcattatcag tataaccacc tttaatttag attaatttaa
     1321 gtatagcatt gtatcctctc gaaagctgtt cttagctttt tgcaattcca atcatcgtac
     1381 caccgataat tactaagaca accccgataa tgaccagaat aagttctttc ttggttttct
     1441 tctctcctag gaaaaggatt ccaccaatgg tcgaaatgac aacacccatt tgtgagagcg
     1501 aaaaacctgt agcgattcca actaatttat ttgagaatag tagagccaag ttaccagtag
     1561 cccacatcac ccctggaatc atatttaacc aggtttgctt tgtaaaacgt ttttcttcag
     1621 acttaataga aaataataat cctgcgacta ccatcccaat tgcttgaggt aaaatcgcgt
     1681 cccacccact aatatcaaac caacgagtga taacgacata tcctacataa cctacggatg
     1741 aaataagtaa agtgataatt ccttttttca tattttggcc ggaattttcg tctttatgtt
     1801 gttgataact tgttaagaaa atcccgataa taattaatgc taatgcggaa aatcctaata
     1861 ctaatttgga agttgtaccc cattcatgaa aagcaaatac accaaaaagc gatgtaccta
     1921 ctaactgcat tcctgtcgaa agtggcattg tttttgatac gcctacttgt gtaaatgccc
     1981 ggaactgatt catttgacct aagctccaaa atgcccctga aataaaacta gcaataataa
     2041 tggttgctgt atattctgga tttgtaaaaa taaaaactcc gattgcgaaa gctagtgcgc
     2101 cgaatgttgt accaatgatt tgctgcctcg gtttaccgcc aatttttgaa acaactaatg
     2161 gcataatccc ccacatcact gccggaatta atgcgataac tatgttcatt tttattcccc
     2221 ctaattcttc tgcttatggt ctataccctt ttcctcatga aatcattcct attcccgtaa
     2281 ttatctgtta aaatgaatta aaattatcaa gaaggtgaga aaatgaaatc aactggaatg
     2341 gtaagaaaaa tcgacgaact tggtcgtgtg gttataccga ttgaaataag aagaacgatg
     2401 aacctaaatg taaaagaccc tttagaaata tttacagatg aagatgcgat tgtattgaaa
     2461 aagtattccg ctggcttggt ttgtgacgtt accggagaat tttctgttga taacaagaaa
     2521 tttgtggacg gtaaattgac actcagtaaa gaaggcgctg cggaattaat ggaagaaatt
     2581 aaacgccgct ttggtgatac attataaaaa aaatcatgcg cgagttccca ttaaaggatt
     2641 cgcgcatgat tttattttat ttcatgataa gcagagtaaa cttctcgttt tggtaaattt
     2701 ctcgctttca taaccgtttt aattgcatct ttagaactaa cattttcctg ttccattatg
     2761 gtgcttacgt gcgttttaat atcgagttct tgccaccaga gttgctcttc tgcaagcggt
     2821 ggattggcat ttccttcaat aatcaagcaa aattctccgc gaacttcttc gtccattgcc
     2881 cagtttaacg catcttcaac cgttccacgt aaaaattctt caaatctttt tgtgagctct
     2941 cgacacaaga caattttccg atcatttcca gtgattttga tgattgcttt tagtgtttct
     3001 tttaaacgat gtggtgattc atataaaatc cacgtttctt cgcgcgccgc taatttttca
     3061 atcgcttgag tacgttcttt gttttggcgt ggaagaaatc cgtaaaagta aaacggctgc
     3121 ggggcaagac cagatgcaat cagtgcagtt aatgcagcat tggctcctgg tagagggatg
     3181 acaggaatat tagcatttag cgcactttga acaagttcgt atcccgggtc agaaatagat
     3241 ggcatccccg catcactaac aagcgccacc acttcaccgt ctaacatccg ctgaataata
     3301 ttatcttctt tattttcctt cgtaaactga tggtagctcg tcattcgggt tgtaatttca
     3361 aaatgattta aaagtttcac ggtgttccgc gtatcttccg ctgcaataat atccgcttct
     3421 ttaagcatgc gaattgcacg aaaagtcata tcttctaaat taccaatcgg cgttggcact
     3481 aaatataatg ctccttggct ggctccactg aaactctttt ggctttttat cattcggact
     3541 cctcccgttg tattaaatag gcgtctttat ttttacgtga taattttttg aacgcagctt
     3601 ctgcttttgt agcttcactt cttgtttcga atttttcaaa atgaatgact tttaccgggc
     3661 gacgtgtttt tgtatattta catctaattc ccgcattatg ttccgcttct cggcgaataa
     3721 catctgttgt atagccacca taataggaat tgtcactaca ttttagcaca taaaagaaat
     3781 gttcactcgc tttcgccata taaaatctcc ttaattactg gtgtatattc ccctagctca
     3841 tcatatacga taacaggtgg aacatatttc acgccaggtt tcccgtcttt gattccttct
     3901 acaagtaccg tattcgcttc tctatctgag cgcgggtgca cgaattgaat gcgtttcggt
     3961 tccaagcgat attttctcat tatatcaatg atgtctagta atcgttccgg acgatgaaca
     4021 aaattcgctt ttccaccttg ttttaaaagg cttgcggcta cacgaatagt atcctctagc
     4081 gtacacataa cttcatggcg agcaatccga aaatgttcat tggtattttt caaacttgta
     4141 tccggggttg caaaataagg tggattacag gtaacaatgt ccgcgcgctc ttttggaata
     4201 agatctgtaa tttttttcaa atcatattcg attatttcga tttggtcttc cagttgatta
     4261 taagcaacac ttcttttcgc catatctgcc agacgttctt gaatttcaac accaactatt
     4321 ttcgcttttg ttcgcgtact aagtagtaaa ggaataatcc catttccgct acacaaatca
     4381 attattttcc ctttacggat tggtaaataa ctaaatttag cgaggagaac cgcgtctatc
     4441 gagaaagaaa ataccgatgg gctttgaata atccgcaaat tttctgctag taaataatct
     4501 agtctttcat caccaattaa ttcgagtttt tccaaatgat tcaccttttc tagcaaaaag
     4561 cccttctctt gaattgagaa aggcccgtca tgttattttt tattgagcaa ggataagcaa
     4621 aataaacaat cttcatcatt accacgcggg ctgccgaaat gtacattgca aacatgaaat
     4681 ccttccttgt aaagttggac aagattgtca taaccttccc caagttcaat catttgctgc
     4741 attgcttcct tacgattagg cgccatcaca ccgtgttccg cctctatttc ggctttaggt
     4801 tctggtgtcg cttcatccgt caaagaaagt ctgcgtcgca aatgttcgtt ttcaaggttt
     4861 aatcggttat tttcttccaa catttcgcct aagtttgtct ttagatctcc aagttgctga
     4921 tacaattcgc caatttgctc ctccatatta ctgactgagt caaaaatagc ttttttatcc
     4981 aattttttca cctcaagact ttgccggttg ttttagaaat tcgttatatg gacgtaactc
     5041 atccaactcg tattctataa ccgtctcttc ttcgggcaaa ctcacttgta ggattctaga
     5101 cagcaagttg attcccgaaa cacgtgcttc tatgccttct ggagttttta cttttacacc
     5161 aacatctggc atttcacgtt tagcttgctc atattcatcg ttctcatatt tcaagcaaca
     5221 cattaatcgt ccacataaac cagaaatttt cgttgggtta agggacaggt tttggtcttt
     5281 cgccattttg atggaaactg gttcgaaatc acctaagaaa gtggagcagc agagcatacg
     5341 accgcatggg ccaatcccac cgagcaattt cgcttcatca cgtacaccaa tttggcgaag
     5401 ttcgatgcga gtccgaaaaa cagatgctaa atctttcacg agctcccgga aatcgacgcg
     5461 accttctgcg gtgaaataaa aaatgatttt attacggtca aatgtgtaat caacatcaac
     5521 taaactcatt tcaagttcgc gctcgcggat cttttcatca caaagtaaaa aggctttctg
     5581 acacgagtcg ccattctcag caacgcattt ataatccgct tctgttgcga tacgcagtac
     5641 tttcttaagt ggtaaaacga catcttcttc gtccacgtag cgcggttcaa tgactgtttt
     5701 accaaattca attccttgtg cattttcaac aataacacct tggttttctg tgatttccag
     5761 ttcgccaggt gagaaataat atattttacc aacgtcttta aaacggacgc ctacaatttt
     5821 aagcatagcg attacctccc ttggatttcc agaactaact gctccattag aagttgcgtg
     5881 ttcatattgg aatccagttt tgatttcgca gcgagaatct tctcgatttc ccctgtggtt
     5941 tcggacagtg atttacgcag cgcatcttgt ccgagcattt ctttttgcgc agtacaaata
     6001 ggttcgtagt tctcgtcaag tgtaaggtgt agccggtcgc ggtacagcag taacaataat
     6061 tcgagcccaa gcgccatctt atctttctct ttaaaaagtg gcatccatga ttcttgaatg
     6121 ataattaatg ggctggttcc ttgatggtga attccttcat ataacttgat gacaacattt
     6181 cttgcctcac taaaccactc actctcttca aaagccttcg cttcttccac actcccagta
     6241 atgctagcat aaatccgcgc tttttgttcg gaaatgcctg ctgctgttag tgatgcgagt
     6301 aaactatcaa aagtcagtga tttgaatgtg acaggttgca gtcttgattg aatcgttggc
     6361 aaaatttgcc cggggtttgt tgttaaaaat aataataaca aaccgccttc tggttcttct
     6421 ataaatttca gcagactatt ggctgattga acagtcattt tttctgcatc gtaaatgata
     6481 actacttttt gatccgattc cattccgcgt ttactaagtt cttgcttcag cgcgcgaacc
     6541 tgatcaatct taatactagc tccatctggc tctagcaaat gaacatccgg atgattatga
     6601 cttgctattc tcgtgcaatt ggcacacttc ccacaagcaa gctcggtttc agtgctttct
     6661 aaacaaaaaa gactctgagc taaccaaagt gctgtgcgtt tcttgcctgt acctcttgct
     6721 ccttcgaata aatagccgtg agataatcga ttttcgcgga cactttttga aaaaatcttc
     6781 atgaccactg gttgcatcac tgtaagttca tcctgtaatc ccacaaaaaa cttcctttct
     6841 atccatattg taatattata ccatgaccaa gcttaaatag cttcggaatt ttaacaaaaa
     6901 aataacgttg gattggttaa ctaatattac
//
LOCUS       DASEAA010000137         6925 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.137, whole genome shotgun sequence.
ACCESSION   DASEAA010000137 DASEAA010000000
VERSION     DASEAA010000137.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6925)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6925)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6925
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.137"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            21..293
                     /gene="rpsP"
                     /locus_tag="U0342_002253"
     CDS             21..293
                     /gene="rpsP"
                     /locus_tag="U0342_002253"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S16"
                     /protein_id="HEM2423594.1"
                     /translation="MAVKIRLKRIGSKKKPFYRIVVADSRFPRDGRSIETIGTYNPLL
                     DPVEVKIDEEATLKWMHNGAKPSDTVRNLLSREGIMEKFHNQKLGK"
     gene            310..540
                     /locus_tag="U0342_002254"
     CDS             310..540
                     /locus_tag="U0342_002254"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="KH domain-containing protein"
                     /protein_id="HEM2423595.1"
                     /translation="MEELILSIVKPLVDHPEDVVITPEETDTSLTYKLSVSKEDMGRV
                     IGKQGRIAKAIRTLVYAVGSKNDKKIRLEIIE"
     gene            651..1385
                     /locus_tag="U0342_002255"
     CDS             651..1385
                     /locus_tag="U0342_002255"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="gamma-glutamyl-gamma-aminobutyrate hydrolase
                     family protein"
                     /protein_id="HEM2423596.1"
                     /translation="MKPVIGITGNRLVKGVDVFYGHRVTYTQQRYVDAIQKVGGFPIA
                     LPIDDPSVAVQAISLVDGLLLTGGQDITPQFYLEEPSQEIGAYFPPRDSYEIALVRAA
                     LDAGKPIFAICRGMQLVNVALGGSLYQDISQVETKALQHLQRVDEQLGSHTIDIEPTS
                     ELAKHHPNKKLVNSLHHQFIKKLAPSFKVTARTADGMIEAVEGDNLPSWYLGVQWHPE
                     LMFQTDPESEQLFRALVDESKKTMVK"
     gene            1413..1799
                     /locus_tag="U0342_002256"
     CDS             1413..1799
                     /locus_tag="U0342_002256"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlqD family protein"
                     /protein_id="HEM2423597.1"
                     /translation="MEIIQKVVVKQILTEASKQELIEYYTEQKRQIEQECDQLHFEQK
                     KMERKSKFQPERVADYFTHELDLRREKKKLIQFQMEQLEVLELGSEIREREMETIIDV
                     QVGDKWDKSIFDKTIVVKDGIIVEIR"
     gene            1809..2327
                     /gene="rimM"
                     /locus_tag="U0342_002257"
     CDS             1809..2327
                     /gene="rimM"
                     /locus_tag="U0342_002257"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome maturation factor RimM"
                     /protein_id="HEM2423598.1"
                     /translation="MEKMYNVGKIVNTHGLIGEIRVIATTDFPEERFQVGNTVYLFEK
                     NSKKPEKLIIRSHRKHKNFDLLMFEGFTGIHQVERMKEGVLKIKEAQLTDLEENEFYF
                     HEIIGCIVVTTDGEELGEITEILTPGANDVWVVKGSDKKEKLIPYIADVVKEININDK
                     KITIEVMEGLLD"
     gene            2327..3064
                     /gene="trmD"
                     /locus_tag="U0342_002258"
     CDS             2327..3064
                     /gene="trmD"
                     /locus_tag="U0342_002258"
                     /EC_number="2.1.1.228"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (guanosine(37)-N1)-methyltransferase TrmD"
                     /protein_id="HEM2423599.1"
                     /translation="MKIDILSIFPDMFSGVTGNSIIKKAIENERVAVEVTDFREYAEG
                     KHHIVDDYPYGGGAGMLLKAQPIFDAVQAVKEKQPETKPRVILMDPAGKRFDQKMAEE
                     FAEEEHLVFICGHYEGYDERIREHLVTDEVSIGDYILTGGEIGAMIVMDSVIRLLPGV
                     LGNKDSAVTDSFSTGLLEHPHYTRPADFRGMKVPDILLSGNHAWIEEWRDKESLKRTY
                     ERRPDLLKNYPLTDKQKTWLKEWSDSK"
     gene            3084..3473
                     /locus_tag="U0342_002259"
     CDS             3084..3473
                     /locus_tag="U0342_002259"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423600.1"
                     /translation="MAIFGTPDEKETKKSERQKEREAYVQEENDQKRIGQRWQDIQVS
                     TGPINVNHDILTVVFAKSVRPRIKSDPEAYLETVGFENLLQELQKKALDAGGNGLIHC
                     SFTEQFVDGLVYQLAYGTAVNIKITRF"
     gene            complement(3504..4220)
                     /locus_tag="U0342_002260"
     CDS             complement(3504..4220)
                     /locus_tag="U0342_002260"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2423601.1"
                     /translation="MKITAKHQYWQITTLPYLFPVNCYLILEKDGLTLIDTGILSNAK
                     GIIALIHKLNLPLKRILLTHAHGDHIGGLVAVKAAFPEALVMIGSREKLLVETKEIYA
                     FEAQKPLKGGYSDQLPVSIDHILKDGDMIGSLLIIDTPGHTPGSISFFDERNGHLFVG
                     DLFQTRGGAAICGEKRWLFPFPAMGSWDLPTSIASAENLQLFDVTEIACGHGPVKAMA
                     DFDLTNVLKRAKKQATNEKD"
     gene            complement(4217..4828)
                     /locus_tag="U0342_002261"
     CDS             complement(4217..4828)
                     /locus_tag="U0342_002261"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739212.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)H-dependent oxidoreductase"
                     /protein_id="HEM2423602.1"
                     /translation="MAKIVAIIGDPREKGTSRDLFQKYLAVFQEQPTIEVKIYDIRKL
                     AFDPNLPEGYRTEQTPDIIALKNDVRSADLLLFSYPVWWFNVPAVLKGVIDHLFWPGE
                     SYSFKDKKYFLTGPWRKKRARLIYTIGGMEIQHRLFARPALTALRYPLWMSGVFSVKV
                     TSIDRLDLSIRRTDDYYDKKVTRAAKRDIQFLLKKQIRKKVFA"
     gene            complement(4828..5262)
                     /locus_tag="U0342_002262"
     CDS             complement(4828..5262)
                     /locus_tag="U0342_002262"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2423603.1"
                     /translation="MEQWTVKEMAAYVGISADTLRYYEKNKIIVPNRLENGYRVYNTE
                     HLLELKFILVMKYARFSLSEIKLMMEWLRSEPSVACNTASKELLALKAAEIKQTIAHY
                     TKIAALLEELPQIDEVQDYSTVQKDVNTFVEHIFTDIRKDGF"
     gene            5471..5815
                     /gene="rplS"
                     /locus_tag="U0342_002263"
     CDS             5471..5815
                     /gene="rplS"
                     /locus_tag="U0342_002263"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L19"
                     /protein_id="HEM2423604.1"
                     /translation="MNKLIDEITKSQLNPDVPNFRPGDTVRVHAKVVEGTRERIQLFE
                     GVVIKRRGAGISETFTVRKISNSVGVERTFPVHTPRIAKLEVIRRGKVRRAKLYYLRN
                     LRGKAARIKEIR"
     gene            6602..>6925
                     /gene="inlC"
                     /locus_tag="U0342_002264"
     CDS             6602..>6925
                     /gene="inlC"
                     /locus_tag="U0342_002264"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 3 internalin InlC"
                     /protein_id="HEM2423605.1"
                     /translation="MKKNNWLQNAVIAMLVLIVGLCINTGSGTKVQAESIQRPTPINQ
                     IFPDPGLANAVKQNLGKQSVTDLVSQKELSGVQNFNGDNSNIKSLAGMQFFTNLKELH
                     LSHNQI"
BASE COUNT         2340 a         1289 c         1376 g         1920 t
ORIGIN      
        1 tatggaggtg taattaaact atggcagtta aaattcgttt aaaacgtatt ggttctaaaa
       61 agaaaccttt ctaccgtatt gtagtcgctg attctcgttt cccacgtgat ggccgttcaa
      121 tcgaaactat tggtacttat aatccattac ttgatccggt tgaagtgaaa atcgacgaag
      181 aagcaacttt gaaatggatg cataatggtg cgaaaccatc tgatacagtt cgcaatcttc
      241 ttagccgcga aggtatcatg gaaaaattcc ataaccaaaa attaggtaaa taaggaggtc
      301 tcggcgcgaa tggaagaact cattctctca atcgtgaaac ctcttgttga ccacccggaa
      361 gacgttgtta tcacgccaga agaaacggat acatcgttaa cctacaaatt gtctgtcagt
      421 aaagaagaca tgggacgcgt gattggtaag caaggtcgta ttgcgaaagc gattcgtacg
      481 cttgtctacg cagttggctc caaaaacgat aagaagattc gtcttgaaat tatcgaataa
      541 caaaaactcg tcaatttggc gagttttttt ataactattt ttaaataatc atcagagaag
      601 caattacctc actaaatgtt gtaaaataga atagaaatgg aggaattgtg atgaagccag
      661 ttattggaat taccggaaat agattagtaa aaggtgtgga cgttttttac ggacaccgtg
      721 tgacttatac gcaacagcga tatgtagatg ctattcaaaa agttggcgga tttcctatcg
      781 ctttgccaat agatgacccg tctgttgccg ttcaagcaat ttctctcgta gatggtttgc
      841 ttttaaccgg tggacaagac attacgccac aattttattt agaagagccg tcccaagaaa
      901 tcggcgctta ttttccacct cgggacagct atgaaatcgc cttagttcga gcagcattag
      961 acgctggaaa accgattttt gctatttgcc gcgggatgca actagttaat gtggcgttag
     1021 gcggctcact ttatcaagat atcagccaag tcgaaacgaa agccctccaa catttgcagc
     1081 gcgtcgatga acaactcggc tctcatacaa ttgatattga accgacaagt gaactcgcaa
     1141 agcatcaccc gaataaaaaa ttagtcaatt cattgcatca ccaatttatc aaaaaattag
     1201 cgccaagttt taaagtaaca gcgcgtactg cggatggaat gattgaagct gtagaaggtg
     1261 acaatttgcc aagttggtat ttaggtgttc agtggcaccc agaattaatg ttccaaacag
     1321 atccggaaag tgaacaatta ttccgggcat tagtagatga atccaaaaaa actatggtaa
     1381 aataaggaca taatcgctag tggaggtgtc cagtggaaat catccaaaaa gttgtcgtca
     1441 aacaaattct aaccgaagca agtaaacaag aattaatcga gtattatacc gagcaaaaac
     1501 gacaaatcga acaagaatgc gatcagttgc attttgaaca aaagaaaatg gaacgaaaaa
     1561 gcaaatttca accagaacga gtggccgatt actttaccca cgaactcgac ctgcgccgag
     1621 aaaagaaaaa actaattcag tttcaaatgg aacaattaga agtcctcgaa cttggcagtg
     1681 aaattcgcga acgagaaatg gaaacgatta ttgatgtaca agtaggagac aagtgggata
     1741 aatccatttt tgataaaacc attgttgtaa aagatggaat catagtagaa atacgctaga
     1801 ggtgacttat ggagaaaatg tataatgtag gaaaaattgt taatactcat ggcttaatcg
     1861 gtgaaattcg agttatcgca acgaccgatt ttccagaaga acggttccaa gttgggaata
     1921 ccgtgtactt atttgaaaaa aacagcaaaa agcctgaaaa actaatcatt cgctcacacc
     1981 gcaaacataa gaactttgat ttgctgatgt ttgaaggatt cactggaatt catcaagtgg
     2041 aacgtatgaa agaaggcgta cttaaaatca aagaagcgca actaactgat ttagaggaaa
     2101 acgaatttta ttttcatgaa atcatcggtt gtatcgttgt aactactgac ggcgaagagc
     2161 ttggcgaaat cacagaaatt ctaacaccag gcgccaatga tgtatgggtt gtaaaaggca
     2221 gcgacaaaaa agaaaaacta attccttata ttgccgacgt tgtaaaagaa atcaatatta
     2281 atgacaaaaa aattacaatc gaagtcatgg aaggactgct agattaatga aaattgacat
     2341 tctatccatt ttcccagata tgttttcggg agtgaccgga aattccatta taaaaaaagc
     2401 catcgaaaat gagcgtgtcg cggttgaagt gactgatttc agggaatatg cagaaggaaa
     2461 gcatcatatt gtcgatgatt acccttatgg tggcggggca ggtatgttac tcaaagcgca
     2521 accgatattt gatgccgttc aagctgtcaa agagaaacaa ccagaaacaa agccaagagt
     2581 tattttaatg gacccagcag gcaaacgctt cgaccaaaaa atggcagaag aatttgccga
     2641 agaagagcat cttgttttta tttgcggtca ctatgaaggt tacgacgaac gaattcgcga
     2701 acaccttgtt acggatgaag tgtcgattgg agattacatt ttaactggtg gcgaaattgg
     2761 tgcaatgatt gtaatggaca gtgttatccg acttttaccg ggagtacttg gtaataaaga
     2821 ttccgctgtg acagattctt tctcgaccgg tttgcttgaa catccacact acacgcgacc
     2881 agccgatttt agaggaatga aagtgccaga tattttactc agcggaaatc atgcatggat
     2941 agaagaatgg cgcgacaaag aatcgctcaa aagaacctac gaacgccgcc cagatttact
     3001 taaaaactat cccttaacag acaagcaaaa aacttggctc aaagaatggt ctgacagtaa
     3061 ataatcaaag gacgtgattt taaatggcaa tttttggaac acctgatgaa aaagaaacca
     3121 aaaaatccga gcgtcaaaaa gaacgagaag cctatgtaca agaagaaaat gaccaaaagc
     3181 gaattgggca aagatggcaa gacatacaag tttccactgg accgattaat gtgaatcatg
     3241 atatcctcac ggttgttttc gccaaaagtg tccgcccaag aatcaaaagt gatccagaag
     3301 catacttaga aacagtgggc tttgaaaatt tactacagga attacaaaag aaagcattag
     3361 atgcaggcgg gaatggctta attcactgtt cgtttaccga gcaattcgtc gatggcctcg
     3421 tttatcaact cgcatatgga acagccgtaa acatcaaaat tacgagattc taaaaaaaga
     3481 ctagaaagcc agtaattggt tttctagtct ttttcatttg ttgcttgttt ctttgctcgc
     3541 tttagtacat tcgttaagtc aaaatcagcc atcgctttca ccggtccatg cccacaagca
     3601 atttccgtca catcgaaaag ctgtaaattt tccgccgatg cgatacttgt tggaagatcc
     3661 caagaaccca tcgctggaaa agggaacaac catcgcttct ccccacaaat agccgctcct
     3721 ccacgagttt gaaataaatc tcctacaaat aaatgcccat tacgctcatc aaaaaaggaa
     3781 atggagccag gtgtatgtcc cggcgtatcg ataattaaca gggagccaat catatcacca
     3841 tcttttaaaa tgtgatcaat gcttactgga agttgatctg aataaccgcc ttttaacggc
     3901 ttctgtgctt caaaagcata aatttctttc gtttctacaa gcaatttttc tctgcttcca
     3961 atcattacaa gcgcttctgg aaaagctgct ttcactgcga ctaaaccgcc aatatggtca
     4021 ccatgcgcat gcgttaataa aatccgtttt aaaggtaaat ttaatttgtg gatgagtgca
     4081 atgattcctt tcgcgttcga caaaatccca gtatcaatca atgttaagcc gtctttttct
     4141 aaaattaagt aacaattcac cggaaaaaga tacggcaatg tcgtaatttg ccaatattga
     4201 tgtttggcag taattttcat gcaaaaacct tctttctaat ttgctttttt agcaagaatt
     4261 gaatatcgcg ttttgctgca cgtgtaactt ttttatcata gtagtcatca gtccttctga
     4321 tagaaagatc cagtcgatca attgaagtca ctttcaccga aaacacgcca ctcatccata
     4381 atgggtaacg caaggcagta agagcagggc gggcgaaaag tcgatgttgt atttccattc
     4441 cgccaatcgt ataaatcaac cgcgctcgtt tttttcgcca aggtccagta agaaaatatt
     4501 ttttatcttt aaaactatag ctctccccag gccaaaacaa atgatcaata acacctttta
     4561 acacagccgg aacgttaaac caccaaaccg gataagaaaa tagaagtaaa tcagcggaac
     4621 gaacatcatt tttaagcgca attatgtcag gggtttgctc cgtacgatag ccttcaggta
     4681 aattagggtc aaaagctaat ttgcggatat catagatttt tacctcgatt gttggttgtt
     4741 cctgaaaaac agctaaatac ttctgaaaca aatctcttga tgtacctttt tcccgtgggt
     4801 caccaataat cgccacaatc ttagccatta gaacccgtcc tttctgatgt cagtaaaaat
     4861 atgctccaca aaagtgttaa catctttttg aacagtgctg taatcttgga cctcgtcaat
     4921 ttgcggcaat tcttctaaaa gagcagcgat ttttgtatag tgtgcaatcg tctgtttgat
     4981 ttccgctgct ttaagcgcaa gtaactcttt tgatgccgta ttacaagcga cagaaggctc
     5041 gcttctcaac cattccatca tcaattttat ttcagaaaga gaaaatcggg catatttcat
     5101 tactaaaata aactttaatt ctaatagatg ttccgtgtta tacacacgat acccgttttc
     5161 cagccgatta ggtacaatta tcttgttttt ttcataatat cgtaatgtat ccgctgaaat
     5221 acctacataa gcagccattt cttttactgt ccattgttcc atctctgaca cctccatttg
     5281 atatactaaa ggtaacatta aaccatactc caaggtcaag cttttttatc aaaagaaaaa
     5341 gtaagaaaaa aactttacag cgaaactagt ttatggtaac ctaaataagg tgactggaga
     5401 gaccagtctg ataacgatat tccgcttcat tattaatatg aatgaatgtt tgttggaagg
     5461 agagaaaaac atgaacaaac tgattgatga aatcacaaaa agtcaactaa acccagatgt
     5521 tccaaatttc cgtccgggtg atactgtacg tgtacatgcg aaagtagtcg aaggtactcg
     5581 cgaacgtatc caattattcg aaggcgttgt aatcaaacgt cgcggagctg gaatcagcga
     5641 aactttcact gttcgtaaaa tttctaacag tgttggcgtg gaacgtactt tcccagtaca
     5701 tactccacgt atcgcaaaat tagaagttat tcgtcgtggt aaagtacgtc gtgcgaaact
     5761 ttactaccta cgtaacctac gtggtaaagc ggctcgtatt aaagaaattc gttaatcatt
     5821 taacggctga aacccttgag aaatcaaggg tttttgtttt gcttggaatt agaatgctaa
     5881 aatgtgaaat tttcaccttt cgtttttact tacaaaagtg ggggtgttcc aatagggaaa
     5941 atcgttttgt caaattatgc gttacacttc aaaggtgggg cttgggatac tgcggcatag
     6001 aaagtagagt ccgccaaaac caaaacgaca gataaatatg cgcggaaagt tgggtatgac
     6061 ttacatggtc cgggatggta tactatacaa gcgtatggtt caaaaagata ctttgaatta
     6121 agaagtacaa gaaagttaac ttcattagac aaaaagaaaa aacaggcaag aatagtacat
     6181 agttataaat actgtggaga gtgaggtgta atatgggagc agctgatttt tggggtttca
     6241 tatatgtagt ttcaagatag ctattgttgc ggcagtggtt tacttcttat acttattgag
     6301 aaaaattgca aataaataga aaaaaagcct tgtcaaacga ggcttttttt tatgcaaaaa
     6361 atacgacgaa tgaagccatg tgagacaact tggactagca gacaacaaag aaggtagaac
     6421 atgttttgaa aaatttactg attttcgatt atttttaacg cttgttaatt taaacatctc
     6481 ttatttttgc taacatataa gtatacaaag ggacataaaa gattcacagc gtttgttaaa
     6541 taggaagtat atgaaaatcc tcttttgtgt ttctaaattt atttttaagg agtggagaat
     6601 gttgaaaaaa aataattggt tacaaaatgc agtaatagca atgctagtgt taattgtagg
     6661 tctgtgcatt aatacgggtt ctgggacaaa agtacaagct gagagtattc aacgaccaac
     6721 gcctattaac caaatttttc cagatcccgg cctagcgaat gcagtgaaac aaaatttagg
     6781 aaagcaaagt gttacagacc ttgtatcaca aaaggaacta tctggggtac aaaatttcaa
     6841 tggagataat agcaacatta aatctcttgc cggaatgcaa tttttcacta atttaaaaga
     6901 acttcatcta tcccacaatc aaata
//
LOCUS       DASEAA010000138         6922 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.138, whole genome shotgun sequence.
ACCESSION   DASEAA010000138 DASEAA010000000
VERSION     DASEAA010000138.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6922
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.138"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..551
                     /locus_tag="U0342_002265"
     CDS             <1..551
                     /locus_tag="U0342_002265"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464313.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HEM2423606.1"
                     /translation="YKAKNPSDTVEELVLYNTEVPLLDLELMTAGRELQAGKAFTDLA
                     PDVQKKLNAYNALTEQFLAADKYVFVFPLWNLGIPPLLKAYIDTFVIAGKSFRYTEHG
                     PEALLKDKKAILIHGSGGIYSAGPTSSFTHGEPYLRTILQFIGINVVPSIFVEGIDHN
                     PSKEAEIVAAAKAVAQESAAEF"
     gene            745..2121
                     /locus_tag="U0342_002266"
     CDS             745..2121
                     /locus_tag="U0342_002266"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464314.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="amino acid permease"
                     /protein_id="HEM2423607.1"
                     /translation="MEEQKEELQRGLKNRHIQLIAIGGAIGTGLFLGAGKSIHLAGPS
                     IMLVYLIIGAILFFVMRALGELLIHNPTTGSFTEFAEQFIGPWAGFITGWTYWFCWIV
                     TGIAEITAVGMYVKFWVPDLPQWIPALACVLILLLFNLATVKAFGEIEFWFAIIKVVV
                     IIALIVIGFVLVFIGYKHGTSTASFSNLVDYGGFFPNGIAGFLLAFQMATFSFVGIEL
                     VGVTAGEADDPERTLPKAINNIPIRILIFYIGALLVLMSIYPWSNIDPNTSPFVSVFT
                     MIGIPAAAGIINFVVLTAAMSSCNSGIFSTSRMLYTLSAEGKAPKKMHHLSSNGVPAT
                     ALITSTACLLIGVFLNYFLPEQVFILVTSIATICFIWVWGVILVAHLRFRHKHPEIAE
                     KSKFKMPLSPLMNWVSLIFFGGLLVILGFAADTRIALFVTPVWFLILGIAYQVLKASN
                     RKTKIRHN"
     gene            2386..6816
                     /locus_tag="U0342_002267"
     CDS             2386..6816
                     /locus_tag="U0342_002267"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464315.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-hydroxyacyl-CoA dehydratase"
                     /protein_id="HEM2423608.1"
                     /translation="MIHAGLDVGSTTAKAVALNDQGDILFQTYRRHYSDIKKVTLEIM
                     QDMQKKCGMTEMTFKITGSSGLAISKFLNVPFVQEVIACTEAVEQVIPETDVVIELGG
                     EDAKIIYFSGGIEQRMNNACAGGTGAFIDQIATLLQTDPTGLNELAQNANTIYPIASR
                     CGVFAKTDVQPLLNEGARKEDIAASIFQSVVTQTISGLACGRPIRGKVAFLGGPLTFL
                     DQLRYRFTETLKMKDSDIIAPQNAEYFIALGTAFTGLNDVPLKVDDMIYRLSNMDMTT
                     MATDTVILPALFEKQEDLEAFRARHNQMKAKRAKLEDYEGDAYLGIDAGSTTTKLILM
                     SQTNEILYSFYSSNNGNPLQSVIDATSDLYEILPEKVRVAQSGITGYGESLIKAALKI
                     DVGEIETVAHYRAAREFLPDVDFILDIGGQDMKCMKIKKGALDSLMLNEACSAGCGSF
                     LETFAQTLNLSIEEFAARALEAKAPVDLGSRCTVFMNSKVKQVQKEGVSMEDLSAGLA
                     YSVVKNALQKVIKLRSPKDIGEKVIVQGGTFYNESVLRAFELLTGREVVRPDIAGMMG
                     AYGAALIAREHYETGEVTEMLVLEKLREFSAETSQSRCNLCSNTCQLTVTRFGDDRMF
                     VSGNRCERGERVETKRNLLPNLYAYKLKRTFDYKSLKKSESTRGTIGIPRALNVFENY
                     PLWHTILTNLGFRVVLSSKSSKNLYDKGIETIASEAVCFPAKLTHGHIMDLIKKKADR
                     IFYPSVVYEKPEFGEATNNFNCPVVAGYPEVIRVNVDALEEKNIPMISPFLTLDNEKA
                     LIEQMSLAFPEVPAADMEKAVQAGLEEAELCRKDIQAEGEAALTYIKKNKIKGIVLAG
                     HPYHIDPEVNHGIPELITMNGMAVLTEDSISHLGEMDHKLRVENQWKYHARLYRAASF
                     TAKSEDLEFVQLTSFGCGLDAITTDMCQEIIEGHNKVYTLLKIDEINNLGAARIRVRS
                     LKAAMEEREKNNVKPGIMPKPKERPLFTKEMKKTYTILAPQLAPTHFEMLEAACKVGG
                     YNLEVLPAVTPRAVDEGLRYVNNDACYPAILTIGQMMDALKHGDYDVNNLAVLMTQTG
                     GGCRATNYISMLKKALGEAGLDHIPVISLNANGLEKQPGFKMTPKVLVRFLAGISLGD
                     ALDRMLYRTRPYEVEPGSANKMFRHYLDAGRALMENYSFGAYKKLANEMVRAFDNLPI
                     TNEVKPRVGVVGEILVKFHPGANNNIVDVIEDEGGEAVVPDLTDFILYCCYDDHFAAN
                     TFGRSKVKSFAKQSVAIPLINQFRKPVTDALKKSERFEAPASIESIAEKASQLLSLGN
                     KMGEGWFLTGEMFELLDSNVPNIACLQPFACLPNHITGRGMIKGLKKMYPEANIMSID
                     YDAGSSSVNQLNRIKLMLSIARKQLETTEVITEKETNTRFNPREKILGKAKQVRESAP
                     VEMIGNKVKQARDADPVGAIAQKVKHVASSSSEHVQTDND"
BASE COUNT         2219 a         1227 c         1493 g         1983 t
ORIGIN      
        1 aatataaagc caaaaatcct tctgatacag tagaagaatt agttttatat aatacagaag
       61 taccactatt agatttagaa ttaatgacag ctggtagaga attacaagct ggcaaagctt
      121 tcactgattt agcgccagat gtacaaaaaa aattaaatgc ttataatgcg cttacggaac
      181 aattcttagc agcagacaaa tatgtttttg tgttcccgct ttggaacctt ggaatcccgc
      241 cattattaaa agcttatatt gatacttttg ttattgctgg aaaatctttc cgttatactg
      301 agcacggtcc agaagcactt ttaaaagata aaaaagcaat cttaatccat ggtagtggcg
      361 gtatttattc tgctgggcca acaagttcat ttactcacgg agaaccttat ttacgtacta
      421 ttttacaatt tatcggtatt aatgttgtac catcaatctt tgtagaagga attgatcaca
      481 atccgagcaa agaagcggaa atcgttgcag ctgctaaagc ggtagcgcag gaaagtgctg
      541 cagaattcta aaaagtttgt gaaaaaatta tttcttgcta atgatattaa gacagtatta
      601 tcaactgtct agaccaataa aaacacataa aaagattgct aatcccttta taaattggta
      661 aagtagagaa gtagattgat cgataaagtg ctgaattaac tcggcacttt attcttttta
      721 attactcgaa agggatgaat ttggatggaa gagcaaaaag aagaattgca aagagggctg
      781 aaaaatagac acattcagtt aatcgcgatt ggcggagcaa ttggtacagg gctttttcta
      841 ggagcaggga agtcaattca tttagccgga ccttctatca tgttagttta cttaattatt
      901 ggggctattt tattctttgt tatgagagct ttgggtgaat tattaataca taacccaaca
      961 acaggatctt ttacagaatt cgcagagcaa tttattggac catgggctgg ctttattact
     1021 ggttggacat attggttctg ctggattgtg acaggtattg cagaaattac agcagttggc
     1081 atgtacgtaa aattttgggt gccagactta ccgcaatgga ttccagcact tgcatgtgtt
     1141 ttgatacttc tattgtttaa cttagcaact gttaaagctt ttggtgaaat cgaattttgg
     1201 tttgcgatta ttaaagtggt tgttattatt gccttaattg ttattggatt tgtactcgta
     1261 tttattggtt acaaacatgg cacaagtaca gcttcatttt ctaatttagt agattatggt
     1321 ggctttttcc cgaatggaat tgccgggttc ttgctagcat tccaaatggc gacattttct
     1381 tttgttggaa ttgagcttgt tggggttact gcaggagaag cggatgatcc agagcgtaca
     1441 cttccaaaag ccattaataa tattccgatt cggattttaa tcttttatat tggtgcgcta
     1501 ctcgtattaa tgtcgattta tccgtggagc aatattgatc caaacacaag cccattcgta
     1561 agcgtcttta cgatgattgg gattcctgca gctgccggta ttattaactt tgtggtgtta
     1621 acggctgcta tgtcttcttg taatagtggg attttcagta caagccggat gctttatact
     1681 ctttctgcag aaggaaaagc accgaaaaaa atgcatcatt tgagctctaa tggtgttcca
     1741 gcaacagcgt taatcacatc tacagcatgt ttacttattg gtgtgttttt aaattatttc
     1801 ttaccagaac aagtatttat tttagtaaca agtatcgcga cgatttgctt tatctgggtt
     1861 tggggcgtta ttttagtggc gcatttacgt tttcgtcata aacatccaga aatcgcagaa
     1921 aaaagtaaat tcaaaatgcc attatctcct ttaatgaact gggttagctt aattttcttc
     1981 ggaggattac tagttatcct cggttttgca gcagatacaa gaatcgcact tttcgtcaca
     2041 ccagtatggt tcttgatttt aggtatcgct tatcaagttt taaaagcttc caaccgaaag
     2101 acaaaaattc gccataatta ataactgagc aagcattcgc taaacggagc tattttaggg
     2161 aatgcttgct ttttttcggc atgaaaatgc tccgcgaaat tctttacaaa tgaaaaaaat
     2221 cgtgtagaat gagaggtgtt tagagcattt tgtcgtattt tcgcatatcg agtgagtact
     2281 cactcatttt tagaaataac tatttatgtg aagcaacgta caaatgacag ataatatgtg
     2341 aagttacata catattaagt agtgcgtaat gaaagggatg agaaaatgat tcatgcaggg
     2401 ttagatgtgg gatcaacaac agcaaaggcc gtagcactta atgaccaggg ggatatttta
     2461 tttcaaacct acagaagaca ttattcagac attaaaaaag ttacattaga aatcatgcag
     2521 gatatgcaaa aaaaatgtgg catgacagaa atgacattca aaattacggg atcatccgga
     2581 ttagcgattt ctaaattctt gaatgtacct tttgtgcagg aagtaattgc ttgtacggaa
     2641 gcagtggagc aagtaattcc agagacagac gtagtaatcg agctgggcgg ggaagatgcg
     2701 aagattattt atttcagtgg tgggattgag caacgaatga ataatgcctg cgcgggtgga
     2761 actggtgctt ttattgacca aatcgcgaca ctgcttcaaa cagatccaac aggtttaaac
     2821 gaactggcac aaaatgcgaa tacgatttat ccgattgctt ccagatgtgg cgtgttcgcc
     2881 aaaacagatg tgcaaccact acttaatgaa ggggctagaa aagaagatat tgccgcttca
     2941 attttccaaa gtgtggtgac acaaacgatt agtgggcttg cttgtggacg tccaatccgc
     3001 ggaaaagtag cgtttcttgg aggaccactt actttccttg atcaattgcg ctatcgtttt
     3061 acagaaacat tgaagatgaa agatagtgat attattgcgc ctcaaaacgc ggaatatttt
     3121 attgcacttg gaacagcttt tactggatta aatgatgtac ctttaaaagt agatgatatg
     3181 atttatcgac tttccaatat ggatatgacc acgatggcga cggatacggt cattttacca
     3241 gcactttttg aaaagcaaga agacttagaa gcttttcgtg cgcgtcataa tcaaatgaaa
     3301 gccaaacgag caaaactgga agattatgaa ggggatgctt atttaggcat tgatgcagga
     3361 tcaactacga ccaaattaat cttaatgagc caaaccaatg aaattcttta ctcgttttat
     3421 tctagtaata atgggaatcc gctccaatca gttattgacg caacgagtga tttatatgaa
     3481 attttaccgg aaaaagttcg agttgcgcag tctggaatta caggctacgg cgagtcgctt
     3541 attaaagccg cactaaaaat tgatgttggc gaaattgaaa cagtggcgca ttatcgtgct
     3601 gctcgtgaat ttttaccgga tgttgatttt attttagaca ttggcggaca agatatgaaa
     3661 tgtatgaaaa ttaaaaaagg cgcactggat agcttgatgc ttaatgaagc ttgctcggcc
     3721 gggtgtggtt cgtttcttga aacgtttgcg caaacactta atttatccat tgaagagttt
     3781 gcggctcggg cgctggaagc aaaagctcct gtagacctag gttcccgttg taccgttttc
     3841 atgaattcca aagtgaaaca agtgcaaaaa gaaggcgtga gcatggaaga tttatctgcg
     3901 ggtcttgctt attcagtcgt aaaaaacgcg ttacaaaaag taatcaaact ccgcagtccg
     3961 aaagacattg gtgaaaaagt aatcgttcaa ggtggaactt tttacaacga atcagtcttg
     4021 cgtgcctttg aactgttaac tggacgtgaa gtagttcgac cggatatagc cggaatgatg
     4081 ggagcatacg gggccgcttt aattgcccga gaacattacg aaactggcga agtaacggaa
     4141 atgctcgtac tagaaaaatt acgtgaattt agcgcggaaa cttcgcagtc gcgctgtaac
     4201 ctttgtagta acacatgtca gcttacagtg acaagatttg gcgatgaccg gatgtttgtt
     4261 agtggaaatc gttgtgaacg cggggaacgt gtcgaaacga agcgtaattt actgcccaat
     4321 ttatatgcgt ataaactaaa acgtaccttt gattacaaat cgctgaaaaa atcagaatca
     4381 actagaggga ccattggtat tccacgcgca ttgaacgttt ttgaaaatta tccactatgg
     4441 catacgattt taacgaactt aggtttccga gtggttttat catcgaaatc atccaaaaac
     4501 ctatacgaca aaggtatcga aacgattgcc tccgaagcag tttgtttccc agccaaatta
     4561 acacacggtc atattatgga tttaatcaag aaaaaagcgg atcgcatttt ctacccatct
     4621 gtcgtttacg aaaaaccgga attcggtgaa gcaacgaata actttaactg tcctgttgtg
     4681 gctggttacc cagaagttat tcgtgtcaat gtggatgctt tggaagagaa aaatattcca
     4741 atgatcagtc cgtttttaac tttagataat gaaaaagcat taatcgaaca aatgagtctc
     4801 gctttcccgg aagtcccagc cgcggatatg gaaaaagcag tccaagcagg gctagaggaa
     4861 gcagaacttt gccgcaaaga cattcaagca gaaggagaag cggcacttac ttacattaag
     4921 aaaaataaaa tcaaagggat tgttcttgca gggcatccat accatattga tccagaagta
     4981 aaccacggaa ttccagaact cattacaatg aacggcatgg cggttcttac cgaagattcg
     5041 atttctcatc ttggagaaat ggaccataaa cttcgggttg aaaatcagtg gaaatatcac
     5101 gcaagactgt atcgtgcagc cagctttact gctaaaagtg aagatttaga atttgtgcaa
     5161 ttgacgtcat ttggttgtgg gcttgatgca attacgacgg atatgtgcca agaaatcatt
     5221 gaagggcata acaaagtata cacactacta aaaatcgatg aaattaacaa ccttggtgcc
     5281 gcacgtatcc gcgttcgttc cttaaaagca gccatggaag aacgtgagaa aaataacgtg
     5341 aaaccaggga ttatgccgaa accaaaagaa cgtccattat ttacaaagga aatgaagaaa
     5401 acgtatacta ttttagcgcc acagctagct ccgacccatt ttgaaatgtt agaagcagct
     5461 tgtaaagtgg gcggttataa cttggaagta ttaccagcag ttacaccacg cgcagtggat
     5521 gagggcttac gttacgtcaa taacgacgct tgttatccag caattttaac gattggacaa
     5581 atgatggatg cgctgaaaca cggcgattat gatgtaaata atttagcggt attgatgacg
     5641 caaacaggtg gtggatgtcg ggctaccaac tatatttcga tgctgaaaaa agctctcgga
     5701 gaagctggcc tagatcatat cccagttatt tcgcttaatg ccaacggttt agaaaaacaa
     5761 ccaggcttta aaatgacgcc aaaagttctt gttcgtttcc tagccggaat tagcttagga
     5821 gatgcgctcg accggatgct ttatcgtact agaccatatg aagtggaacc agggagcgcg
     5881 aataaaatgt tccgtcatta tctcgatgct ggtcgtgcgt taatggaaaa ttactctttt
     5941 ggagcatata aaaaattagc aaatgaaatg gttcgcgcct ttgacaactt accaataaca
     6001 aatgaagtga agcctagagt tggtgtcgtt ggagaaattc tcgtgaaatt ccatccgggt
     6061 gctaataaca atattgttga tgttattgaa gacgagggcg gagaagcggt tgttcccgat
     6121 ttaacagatt tcattttata ttgttgttat gacgatcact ttgcagccaa tacatttggt
     6181 cgttccaaag taaaatcatt cgcgaaacaa agcgttgcga ttccacttat taatcaattc
     6241 cgcaaaccag taactgatgc gctgaagaaa agtgaacgct ttgaagcacc ggcgagtatc
     6301 gaatctatcg ctgaaaaagc gagtcaatta ctatcactcg gaaataaaat gggtgagggc
     6361 tggttcttaa caggggaaat gtttgaatta ctcgatagta acgtaccaaa tatcgcgtgt
     6421 ttacaaccat ttgcttgctt gccaaaccat attactggtc gaggcatgat taaagggctt
     6481 aaaaaaatgt atccagaagc taacatcatg tccattgact acgatgccgg ctcaagctct
     6541 gtgaaccaac taaatcgaat caaattaatg ctctccatcg caagaaaaca actagaaacg
     6601 acagaagtaa tcaccgagaa agaaacaaac acacgattca acccaagaga aaaaatcctt
     6661 ggtaaagcaa aacaagtacg agaaagcgcc ccagtcgaaa tgattggaaa caaagtaaaa
     6721 caagcgcggg atgcagaccc agttggcgcg atagctcaga aagtgaaaca tgttgcatca
     6781 tcaagtagcg agcacgtcca aacggataat gattaatgta aagccaccta taaaataggt
     6841 ggctttttta gataaaattc acaaaaatga cacgaaatag aactatatcc gcaataatag
     6901 tatttttgtt aatacattgg ct
//
LOCUS       DASEAA010000139         6847 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.139, whole genome shotgun sequence.
ACCESSION   DASEAA010000139 DASEAA010000000
VERSION     DASEAA010000139.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6847
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.139"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1780
                     /locus_tag="U0342_002268"
     CDS             <1..1780
                     /locus_tag="U0342_002268"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464250.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="methyl-accepting chemotaxis protein"
                     /protein_id="HEM2423609.1"
                     /translation="KTKLSINIVITTIMLIGLGATSFLGFRHVATLSDNMVDNNVAPM
                     KEIAKIQTNMAQINIDILTMFDTINGKSALIKDIDDLYAENDQAIHNFKKANLTAEDK
                     KQLAYFEEKLADMKSSASSVISDTSSALDDAELLGAQNRYYQNVKTKFDDATKQLNVL
                     NEMNYKEVENSSQAISDFGVKISIIFTAVIIAVLISLFIFNAYITRVILKGIRHLQTA
                     VHKVASGDLSYRSTYNGRDELGDITNDLNEMSENLRLMIEDVKKASTDVKSSSDNVII
                     SSEIISAMTTEMDIEMKMMGEQIQTQIGSMKESTDAMDQMTGGVQNVAEYALKVSDLT
                     KDSAEKTNDGIAVINNLVSQMDRISGVMRSSTDVVSQLVNRVGEVEKALDTVTNIADQ
                     TNLLALNAAIESARAGEHGRGFAVVAEEVRKLAEQSRLAVVDINTVLKKIQTESKTTI
                     EVMNTGLSESEAGQKIISETEATFTDLLNRVNDISAQMQNVSQETEEMAAGIEEVNTS
                     ISDVTEISNQIGEKSTAALEFAEVNKMKVDELVVISEEMQKISGSLEGYIANFNTEVS
                     EEAVEVTEEPESETKDPGEPVLAENV"
     gene            1793..2521
                     /locus_tag="U0342_002269"
     CDS             1793..2521
                     /locus_tag="U0342_002269"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464251.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="C39 family peptidase"
                     /protein_id="HEM2423610.1"
                     /translation="MRIWIKSLLVITACIFSLTLLNTKYTFYSPTVKLESAKVVYKLD
                     NEPFNVRLDVPLVNQMDAPTLFNGCEVTSLAMLLQFNGKRVTKNELANNLPTTPIEQN
                     GLHGNPDKAFVGSISGDSPGLGVNHAPIANLAAKYVNEAHVHDISGNSIQDIITVLST
                     GAPVWIITTTDYHAPKNWQTVQTKEGKKKITYSMHSVVITGFDKDNFYINDPYGHKNR
                     AVKRSVLEEGWSAMGKQAIYLSHP"
     gene            complement(2564..2776)
                     /locus_tag="U0342_002270"
     CDS             complement(2564..2776)
                     /locus_tag="U0342_002270"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464252.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2423611.1"
                     /translation="MVFAKKLVASIAVFISLGFIYFRESTAVAFESTNTASFLPSTGD
                     AFSVWPIVIGVVLVALAVVLFIKKKI"
     gene            3223..5028
                     /gene="glmS"
                     /locus_tag="U0342_002271"
     CDS             3223..5028
                     /gene="glmS"
                     /locus_tag="U0342_002271"
                     /EC_number="2.6.1.16"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464254.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamine--fructose-6-phosphate transaminase
                     (isomerizing)"
                     /protein_id="HEM2423612.1"
                     /translation="MCGIVGYIGTNNAKGILLEGLEKLEYRGYDSAGIALQNKDLVTV
                     VKEKGRIADLASLVPSDAFGTTGIGHTRWATHGKPNHENAHPHQSKSGRFTMVHNGVI
                     ENYTLLKEEYLKNHSFVSDTDTEVIVQLIELFAAELSTKEAFKKALSLLHGSYAICLI
                     DQTDTETLYAAKNKSPLLIGKGENFNVIASDAMAVLKETDEFVEIMDKEIVIVTKDGF
                     TLETLEGEEISRASYTAELDASDIEKGTYPHYMLKEIDEQPAVTRKIIQAYQNEAGEI
                     NVDQTILDEILSSDRIHIVACGTSYHAGLVGKNLIEKMVKIPVEVHVSSEFGYNLPLM
                     SKKPLFIFITQSGETADSRQCLVKVKELGYRTLTLTNVPGSTLDREADHSMYLYAGPE
                     IAVASTKAYTAQISVLAVLAVSLGREIGDAEALSINLAAELGIVATAMEAMVSSKEVI
                     EHIAGEYLATSRNAFFLGRNIDYFVAMEAALKLKEISYIQAEGFASGELKHGTIALIE
                     DGTPVLALITQESINWNIRGNVNEVLARGAKTCVFAMENVAQPGDRFVIPQVHPLLTP
                     LASVIPCQLLAYYAALHRDCDVDKPRNLAKSVTVE"
     gene            5141..5881
                     /locus_tag="U0342_002272"
     CDS             5141..5881
                     /locus_tag="U0342_002272"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464255.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423613.1"
                     /translation="MEVSHVTLEPNKDSRPAVLTIGKFDGVHIGHQTILNTALSIKKE
                     NEILTAISFSPHPLWALKQIEIYREMLTPRMEKERWLAHYGVDHLIETAFTPRYAETT
                     PEEFVRDHLTNLNLSHIVVGSEFNFGKGRDSDVDLLRDLCKPYDIGVTSVPVIETNQT
                     KISSTNIRAFIRRGHFQEAEELLGHPWYITGIVENGEMTGLDDYVLPATGTYQTDSGI
                     VNVTNNRTIEVGLSDGLQQLHMKNELSE"
     gene            5964..6443
                     /locus_tag="U0342_002273"
     CDS             5964..6443
                     /locus_tag="U0342_002273"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423614.1"
                     /translation="MKIPTTLKHKPVIVVENYEEVDGKNAYHSDAKGLSLGLAQWNDR
                     GKVDISAKVWRHTGDKWSRQSEELPLHRVLDLAILIARTKVHFKDAYRLPHFYDKENP
                     MLDRIGLQGDALTIAVCEDNEYIDEDMQLFEQVLKNDDELLSERLKTLSKLLQEAGY"
     gene            6457..6795
                     /locus_tag="U0342_002274"
     CDS             6457..6795
                     /locus_tag="U0342_002274"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GIY-YIG nuclease family protein"
                     /protein_id="HEM2423615.1"
                     /translation="MNKDNRKELIRAYKEKSPDAGVYRFISTKSGKSLIDNTMDLKGI
                     ANKLAFGVKIGAGNMLPPEMAKEAKEYGIDTIQFEILEKVDIKPEMTKEDIKEENDVL
                     LSLWLEREDI"
BASE COUNT         2413 a         1287 c         1350 g         1797 t
ORIGIN      
        1 gaaaacaaaa ttaagcatca atattgttat aacgaccatc atgttaatcg gacttggcgc
       61 gactagcttt cttggctttc gtcatgtagc aacactttca gataatatgg ttgataataa
      121 tgtcgcaccg atgaaagaaa tcgcaaaaat ccaaacaaac atggcgcaaa tcaatatcga
      181 catcctgacc atgttcgaca ctattaacgg aaaatcagct cttataaaag atattgatga
      241 tctttatgcc gaaaatgacc aagcaattca taatttcaaa aaagccaatt taacagcaga
      301 agataaaaaa caattagcgt actttgaaga aaaactagcg gacatgaaat catccgcatc
      361 ctcagtaatc agtgacacat caagcgcact agacgacgca gaattacttg gagcgcaaaa
      421 cagatactac caaaacgtca aaacaaaatt tgacgatgca actaaacaat taaacgtttt
      481 aaatgaaatg aactacaaag aagtcgaaaa ttcttctcaa gcaatttctg actttggtgt
      541 aaaaatcagt atcatattca cagcagttat tattgccgtg ctaatttctc tattcatttt
      601 taacgcttat attacaagag tgattctaaa aggaatccga cacttgcaaa cagctgtaca
      661 taaagtagct agtggagatt tgtcgtaccg cagcacttat aacggtagag acgagcttgg
      721 tgatattaca aacgacttga atgaaatgag cgaaaaccta agattaatga ttgaagacgt
      781 taaaaaagct tctacagacg ttaaatcttc cagtgacaac gttattatta gttcggaaat
      841 tatttctgca atgacaacag aaatggacat cgaaatgaaa atgatgggtg aacagatcca
      901 aacacaaatc ggcagcatga aagaaagcac ggatgcaatg gatcaaatga ctggcggcgt
      961 tcaaaatgtg gctgaatacg cgcttaaagt atctgatcta acaaaagatt ccgcagaaaa
     1021 aacgaacgat ggcattgccg ttatcaataa tctcgtgtct caaatggatc gtatcagcgg
     1081 cgttatgcgt tcaagtacag acgttgtttc tcaattagtt aaccgcgttg gtgaagtgga
     1141 aaaagcgctg gataccgtta caaatatcgc tgaccaaacc aacttgcttg ccctaaatgc
     1201 ggcaatcgaa tctgctcgtg ctggtgaaca tggccgtgga tttgcagtcg tagccgaaga
     1261 agtccgcaaa ctagctgaac aatcacgact tgctgttgtt gacattaata ctgttctgaa
     1321 aaaaattcaa acagaatcaa aaactactat cgaagtaatg aacacaggtc tttccgaatc
     1381 agaagctggc caaaaaatca tttctgaaac ggaagcaact ttcacagact tactcaatcg
     1441 tgtcaatgat atttccgctc aaatgcaaaa tgtatctcaa gaaaccgaag aaatggctgc
     1501 gggaattgaa gaagtcaaca cgtcaattag cgacgtaaca gaaatttcca atcaaatcgg
     1561 tgaaaaatcc actgctgcac ttgaattcgc agaagtaaac aaaatgaaag tggacgagct
     1621 agttgttatc tccgaagaaa tgcaaaaaat ttccggttca ttagaagggt atatcgccaa
     1681 cttcaatacc gaagtgagcg aagaagcggt cgaagtaaca gaagagccag aatcagaaac
     1741 aaaagatcca ggagagccag tcctagcaga aaatgtctag gaagcatgta taatgcgaat
     1801 ttggataaaa tcactgcttg tcattacagc gtgtatattt agtttgaccc ttctaaatac
     1861 gaaatatacc ttttattcac caaccgtcaa actcgaaagc gccaaagtcg tttataaatt
     1921 agacaacgaa ccttttaatg taagattaga tgtgccacta gtgaatcaaa tggatgctcc
     1981 tacgcttttt aatggctgcg aagtaacgag tttagcaatg ctcttacaat tcaatggaaa
     2041 gcgtgtaacg aaaaatgagt tagcgaataa tctcccaaca acaccaatcg aacaaaatgg
     2101 tttacacggt aatccggata aagcatttgt tgggagcatt agcggcgata gccctggtct
     2161 aggcgtgaat catgctccca tagctaatct ggctgctaaa tacgttaatg aagcacacgt
     2221 ccacgatatt agcgggaata gcattcaaga catcattact gtactcagca caggcgcacc
     2281 agtatggatt atcactacca ccgactacca tgcacccaaa aactggcaaa ccgtccaaac
     2341 aaaagaaggt aaaaagaaaa tcacgtattc gatgcacagt gtggtaatta ccgggttcga
     2401 taaagacaat ttttatatta atgacccata tggacataaa aaccgtgccg taaaaagaag
     2461 tgtacttgaa gaaggctggt ctgctatggg aaagcaagcc atttacctaa gtcacccata
     2521 aaaaaatcgt ttgaaagcat atctcatgct ctcaaacgat tttttatatt ttcttcttaa
     2581 taaataggac gacagcaagc gcgacaagca ccactccaat aacaatcggc caaaccgaaa
     2641 atgcatctcc ggtagaagga agaaaggaag cagtatttgt actttcaaat gcgacagctg
     2701 tactttctcg gaaataaatg aatccaagtg aaatgaaaac agcaatacta gcaactaatt
     2761 tttttgcaaa aaccattcag ctcgctcctt tttgtatcat aactatatta ttagtcattt
     2821 gttatttttt gtcaatgtat agaccaattt taaacaaacg gctatatata atgcttgacc
     2881 tagtatacat attattgtaa aatgaatttg tttccttgaa aagtagtgaa ggaggatcgt
     2941 acaattaaat agaagcgcca gaactgattg gaacgaaaat acttgaaggt gaaatccctg
     3001 aaaagtaaac agtcagttga cgaggaggag attaatcgaa gtttcggcgg gagtctcccg
     3061 gctgtgcatg cagtcgttaa gtcttactta caaatcactt gggtgaccaa gtggacagag
     3121 tagtaatgaa acatgttttt taccctccaa ggaaaccaaa aaatgtagag ggcttgaaat
     3181 tggataagtc tgccctcaag tttattattg gaggaattta ctatgtgtgg aatcgttgga
     3241 tatattggaa caaataatgc aaaaggcatt ttattagaag gacttgaaaa attagaatac
     3301 cgcggctatg actctgcggg aatcgctttg caaaacaaag acctagtaac agtagttaaa
     3361 gaaaaaggac ggattgcaga ccttgcgagc cttgtaccaa gtgatgcatt cggtacaaca
     3421 ggaatcggac atacacgctg ggcaacgcac ggtaaaccaa atcacgaaaa cgcccacccg
     3481 caccaaagca aatctggtcg ttttacaatg gttcataacg gcgtaatcga aaactatacc
     3541 cttttaaaag aagaatactt aaaaaatcat tcatttgtta gtgatacgga tacagaagta
     3601 atcgttcagc ttattgaact ctttgcagca gaactttcga ctaaagaagc attcaaaaaa
     3661 gcgttatcgt tacttcatgg ttcttacgcg atctgcttaa ttgaccaaac cgatacagaa
     3721 acactatacg cagcaaaaaa caaaagccca ttactaatcg gaaaaggcga aaacttcaac
     3781 gttattgcaa gtgatgcaat ggctgttctt aaagaaacag atgaattcgt ggaaattatg
     3841 gataaagaaa tcgttatcgt tacaaaagac ggttttacat tagaaacatt agaaggggaa
     3901 gaaattagcc gcgcgagcta cactgctgaa ttagatgcat ctgacatcga aaaaggcaca
     3961 tacccgcatt atatgttaaa agaaatcgat gaacaaccag cagtaacacg taaaatcatc
     4021 caagcttacc aaaatgaagc tggggaaatc aatgtcgatc aaacaattct tgatgaaatt
     4081 ttatcttctg accgtattca tattgtcgct tgtggcacga gctatcatgc tggtttagtc
     4141 ggaaaaaatt taatcgaaaa aatggtgaaa attcctgtag aagtacatgt ttctagtgaa
     4201 tttggctata atttaccgct aatgtctaaa aagccgttat tcattttcat tacccaaagt
     4261 ggggaaacag ctgatagccg ccaatgtctt gtaaaagtga aagaacttgg ttaccggacg
     4321 ctgacattaa cgaacgtacc aggctctacg cttgaccgtg aagcggatca ttcgatgtat
     4381 ctctatgctg gacctgaaat tgcggttgca tcaacaaaag catataccgc acagatttcg
     4441 gttttagcag tacttgcagt ttcacttggt cgcgaaattg gtgatgctga agcgcttagc
     4501 attaatttag ctgctgaatt aggtatcgtt gcaactgcaa tggaagcaat ggtttctagt
     4561 aaagaagtta tcgaacatat tgcgggcgaa tacttagcga cttctcgtaa cgccttcttc
     4621 ttaggtagaa acatcgatta tttcgtagcg atggaagcag cacttaaact aaaagaaatt
     4681 tcatatattc aagcagaagg ttttgcaagt ggggaattaa aacatggtac tattgcgctt
     4741 attgaagacg gcacaccagt tttagcgctt atcacgcaag aatctatcaa ctggaatatt
     4801 cgcggaaatg taaatgaagt cttagcgcgt ggagcaaaaa cttgtgtatt tgcaatggaa
     4861 aacgttgcgc aaccaggtga ccgctttgtt attccgcaag tgcatccatt attaacacca
     4921 ctagcgagcg ttatcccttg tcaattatta gcttattacg cagcacttca ccgtgactgt
     4981 gatgtcgata aaccaagaaa cttagcaaaa agtgtcacag tagaataaag tattcaagac
     5041 cttttcgaaa ttagaaaagg tcttttttta tgtaatcaat aaatttgcac gacgcccttg
     5101 ttatactata aacttagaga ggaatggggg aaatcagcca atggaagtat cacacgtaac
     5161 actcgaacca aataaagata gccgccccgc agttttaaca atcggcaaat tcgacggggt
     5221 acatatcggc catcagacca ttttaaatac agccttatcc ataaaaaaag aaaatgaaat
     5281 attaaccgct attagtttca gtccacatcc gctttgggct ttaaaacaaa tcgaaatata
     5341 ccgcgaaatg ctcacaccaa gaatggaaaa agaacgttgg ctcgcgcatt acggtgtcga
     5401 tcatttaatc gaaacagcat tcacacctcg gtatgcggaa acgacaccag aagagtttgt
     5461 cagagaccat ttaaccaatt tgaatttatc gcatatcgtc gttggttctg aatttaattt
     5521 tgggaaaggg cgcgattctg acgtagattt actccgggac ctatgcaagc cctatgatat
     5581 tggtgtcaca tctgtcccgg ttattgaaac aaatcaaacc aaaataagtt ccaccaacat
     5641 tcgagcgttt attcggcgcg gtcattttca agaagcggaa gagctcttag gccatccgtg
     5701 gtatattact ggaattgtag aaaatggtga gatgactggc ttagatgatt acgttctccc
     5761 ggcaacaggt acgtatcaaa cagactcagg aatagtgaat gtaacgaaca atcgtaccat
     5821 cgaagtcgga ttgtcagatg gacttcaaca attacatatg aaaaacgaac tttccgagta
     5881 attaggaaag tttttcttta cattttataa aattagtaat atactaattt agtaaattac
     5941 taaaaattaa aaggagaaat cttatgaaga ttccaactac cttaaaacat aaaccagtaa
     6001 tcgttgttga aaattatgaa gaagtagatg gcaagaacgc ttaccattct gatgcgaaag
     6061 gactttcgct cggacttgca cagtggaatg atcggggtaa agtagatatt tcagccaaag
     6121 tatggcgtca tactggtgat aaatggtcac gccaatccga agaacttccg ctacaccgtg
     6181 tgcttgattt ggccatttta attgctagaa ccaaagtcca tttcaaagat gcttaccgct
     6241 tacctcattt ttatgacaaa gaaaatccta tgcttgatcg catcggtttg caaggagatg
     6301 cgctgactat tgctgtttgt gaagataacg aatatatcga tgaggacatg caattgttcg
     6361 aacaagtttt aaaaaatgat gatgaactcc tcagcgaacg cctcaaaaca ttaagcaaac
     6421 tattacaaga agcaggttat taaggacgtg aaataattga ataaagacaa tcgtaaagaa
     6481 ctaattcgtg catataaaga aaaatctccc gatgccggcg tttaccgttt tatcagtaca
     6541 aaaagtggta aatccttaat tgataacaca atggatttaa aaggaatcgc caataaactt
     6601 gctttcggag tgaaaattgg agcgggaaat atgctaccac cagaaatggc aaaagaagca
     6661 aaggaatatg gtattgacac cattcaattt gaaattcttg aaaaagtaga tattaagccc
     6721 gaaatgacaa aagaagatat taaagaagaa aatgatgtac tccttagttt atggctagaa
     6781 cgtgaagata tctgagacct ttcacttgaa aggtcttttt ttattaaaat tgtacaataa
     6841 aaagata
//
LOCUS       DASEAA010000140         6604 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.140, whole genome shotgun sequence.
ACCESSION   DASEAA010000140 DASEAA010000000
VERSION     DASEAA010000140.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6604)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6604)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6604
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.140"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            45..725
                     /locus_tag="U0342_002275"
     CDS             45..725
                     /locus_tag="U0342_002275"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463689.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423616.1"
                     /translation="MPKNLYNYQEFIRLSHEGKIAFEQIDVPKNASLLTEKIDIDNHI
                     YLVVDGYIALILNDGSQNPKIYSIQGKGTFLNYFTLLDRSNNHFNFKTLSGCSLYKYS
                     KADMEYFLSMFPENFGFQFFIMKNQTTHIYFKSLMASSPASEKLKTTFSNMALLHGVL
                     SDDDTVILPQAIKTSHLLSYSNLSKSCFYKDLQHLKTTNQIEKKEKSWIIHDQELYAM
                     IQNGQTSF"
     gene            complement(729..1535)
                     /locus_tag="U0342_002276"
     CDS             complement(729..1535)
                     /locus_tag="U0342_002276"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463688.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter permease"
                     /protein_id="HEM2423617.1"
                     /translation="MEMFLYGFMQRAFQASMIIAIIAPLLGVFLIIRRQSLMADTLSH
                     VSLAGVAFGLVLNVNPSVTTLIVVVIAALGIEYLRGVYATYSELSIAILMAGGLAVAL
                     VLMSLDQGGITTSVQQYLFGSIVTISKAQVQLLVILGIAIVVLFLVFKRFMFVLTFSE
                     DVAVAEGVPVRLISLLFSVVTGIAIAVIMPIAGALLVSALIILPAAIGMRISKGFLMC
                     VISAILIGLVGMFSGLVSSYQLGTPPGATITLMFIILFIISTVVLKMARK"
     gene            complement(1484..2188)
                     /locus_tag="U0342_002277"
     CDS             complement(1484..2188)
                     /locus_tag="U0342_002277"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal ABC transporter ATP-binding protein"
                     /protein_id="HEM2423618.1"
                     /translation="MKYIDIANIGFKYESEPVLENISFQVSAGEFIILTGENGAAKST
                     LLRIILGILQPDKGSVTFAKKNADGGRLLTGYVPQQIASFNAGFPSTVLELVRSGRFP
                     NGKWFKRLTTKDHAHVEKALKSVEMWDYRHKRIGELSGGQKQRICLARMFATDPDILI
                     LDEPQTAMDKQSKIRFYDLLRHEAQVHGKAILMVTHDSEEMEDFVDKHIRLIRKEDVS
                     WKCFSMDLCKEPSKHQ"
     gene            complement(2201..3142)
                     /locus_tag="U0342_002278"
     CDS             complement(2201..3142)
                     /locus_tag="U0342_002278"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463686.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc ABC transporter substrate-binding protein"
                     /protein_id="HEM2423619.1"
                     /translation="MKKWSFLVVTVLAFVLVLAGCGASNNKVSGDKDKLKVVTTFYPM
                     YDFTKNVAGDNASIEMLIDAGTEPHDYEPSAKDIAKIEAADVFVYNSEDMETWVPSVL
                     KSLDSKKLTVIYASKGIELVEGTEEEDHDHEHEEGHHHEHDPHVWLSPVLAEQEVTNI
                     QNGLTKADKTNADTYKKNAETYKEKLKTLDNKFKTAFEGAKQRDFVTQHAAFQYLAKE
                     YDLHQVAIAGLSPDQEPSPARLAELQKYVKENNISTIYFEEVASPKVAETLANETGAK
                     LEVLSPIEGITDKEQKKGMDYIAYMEQNLQALQKTIK"
     gene            3365..5020
                     /locus_tag="U0342_002279"
     CDS             3365..5020
                     /locus_tag="U0342_002279"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463685.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2423620.1"
                     /translation="MHFLKKTLPIFAILTVLLLTACGNDNEKSTTKTSPDKIKFLETS
                     ELLTLNTTAEEDFASFTAQNQVFEGLYTLDQKDNFVPGVADGMPEISADQTKYTIKLK
                     KNAKWSDGSQVTADDFVYAWRRAVDPKTAPGYSALFKDSIKNATEINEGKLPVTDLGV
                     VATDPTTLEITLKKPVPYFISLLSFETFFPQKESFVKKQGDKYGTDSAHTLYNGPFVM
                     KDWGGNITNKWTYAKNDQYWDKDNVKVNEIDVQVAKDINAGVNLYNTNEADRVPLSGD
                     FAKQYKDKKDFQTEKDALISYLRMNQKRDGKATPLANNSLRHALNLAVDKKQLTDRIL
                     GDGSFPANGLLPKDFVQNPTTGADFRTDSGDHLVYNKEEALKYWKQAQKELGTDKVTI
                     ELLGDDQETTKTIFAYLKAQFEDNLPGVTIKVKNMPSKSATQLTSDGNYDLSLAAWMP
                     DFKDPWTYSSLFLSDYFNNHMSYNSPAYDKLVKSTDTTLATKPEERWNAFVASEKVLL
                     DDDAAILPLYQHQTAVLQRTDITGVQKHAFGSPYSYKFIRVEK"
     gene            complement(5298..5654)
                     /locus_tag="U0342_002280"
     CDS             complement(5298..5654)
                     /locus_tag="U0342_002280"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423621.1"
                     /translation="MINSRFYEGFEGEAEISFVAGDNKLVIWNGYFETILDNLLDCNV
                     EREGVLKEFFNHEGWYDDSPWMIEDNSLTITQLKCFDISKINQTSMKDDLEEVVKTII
                     SFFENNRFSKIYIEYE"
     gene            complement(5660..6454)
                     /locus_tag="U0342_002281"
                     /pseudo
     CDS             complement(5660..6454)
                     /locus_tag="U0342_002281"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917489.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing N-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
BASE COUNT         2022 a         1347 c         1116 g         2119 t
ORIGIN      
        1 ttctgataca attatgttta caaaagaaga ttggagaaga cgtcatgcca aaaaatttat
       61 ataattatca agaatttatt cgtttatccc atgaaggaaa aatagctttt gaacaaattg
      121 atgtaccaaa aaacgccagc ctattaacag aaaaaatcga tatagataac catatttatc
      181 ttgtagttga tggatatatt gctttgattt taaatgatgg tagccaaaat cccaaaatct
      241 attctattca aggtaaagga acatttttga actattttac attactcgac cgaagtaata
      301 atcatttcaa ttttaagact ctctctggat gttcattata taagtattcg aaagcagata
      361 tggagtattt tctttcaatg tttcccgaaa atttcggatt ccaatttttc ataatgaaaa
      421 accagactac tcacatttac tttaaaagct taatggcaag tagtccggct tctgaaaaac
      481 ttaaaacgac cttttcgaat atggctttgt tacacggggt tctgagtgat gatgacacag
      541 taattcttcc tcaagcaatt aaaacaagtc atctactttc ttatagtaat ctttcgaaaa
      601 gctgttttta caaagatttg cagcatctca aaacaaccaa tcagattgaa aagaaagaaa
      661 aaagttggat tattcatgac caagagcttt atgcaatgat acaaaatggt caaacatcgt
      721 tctaaaaatc atttccgtgc catttttaaa acaacggtcg aaataatgaa aagaatgata
      781 aacattaagg taattgttgc gccaggtggg gttcctagtt ggtaggaaga cacaaggccg
      841 gaaaacattc cgactaagcc aatcagaatt gcactaataa cacacatcag gaaccctttt
      901 gaaattcgca taccgattgc agctggtaat ataataagtg ctgaaacgag taacgctccg
      961 gctattggca taataacagc aatcgcaatc ccagtaacca cactgaataa aagcgaaatc
     1021 aaacgcacag ggactccttc tgcaactgca acatcttcac taaaagtaag tacaaacata
     1081 aaccttttaa acactaagaa caatactacg atagctattc ctaaaattac caacagctgc
     1141 acttgcgcct tactgattgt tacaatcgaa ccaaataagt attgctgcac gcttgttgta
     1201 attccaccct gatccaaact catcaacact aacgccacag caagtccacc agccattagt
     1261 atcgcaatgg acaactctga ataagttgca taaaccccgc gcaaatactc aatcccgagc
     1321 gccgcaataa ctactacaat aagcgttgtc acactgggat tcacatttaa aaccaaccca
     1381 aaggccacac ctgcaagcga cacatgcgaa agcgtatccg ccataagtga ctgtcttcga
     1441 ataatcaaga aaactcctaa aagaggagca attatagcaa ttatcattga tgcttggaag
     1501 gctctttgca taaatccata gagaaacatt tccatgacac atcctccttt ctaataaggc
     1561 gaatatgctt atcgacaaaa tcttccattt cttcactatc gtgcgttacc attaaaatcg
     1621 ctttaccatg tacttgtgct tcatgcctta ataaatcata aaaacggatt ttactttgtt
     1681 tatccattgc cgtttgcggt tcatccaaaa ttaatatatc tgggtcggtt gcaaacattc
     1741 gggccaggca aatccgttgt ttttgaccac ctgatagctc accgatacgt ttatgccgat
     1801 aatcccacat ttctacagat ttcaatgctt tttcaacatg cgcatgatct tttgtagtca
     1861 gccgtttgaa ccatttacca tttggaaaac gacctgaccg tactagttcg agaactgtac
     1921 ttggaaaacc cgcattaaat gatgctattt gttgtggtac ataacctgtc aaaagtcgcc
     1981 cgccatctgc gttctttttg gcgaaagtaa cggaaccttt atcgggttgt aaaatgccca
     2041 aaataatacg gagcagtgtt gatttagctg ctccgttttc tcctgttagt ataataaatt
     2101 ctcccgcact cacttgaaaa gaaatgtttt caagcactgg ttcggattcg tatttaaaac
     2161 caatattggc tatatcgatg tatttcattt gatcgcttcc ttattttatt gttttttgca
     2221 aggcttgtaa gttttgttcc atataagcaa tataatccat gccttttttc tgttctttat
     2281 ccgtaattcc ttcgataggg cttagtactt ctagttttgc tcccgtttcg tttgcaagtg
     2341 tttctgcaac ttttggtgaa gctacttctt caaaataaat ggtgctgata ttattttctt
     2401 tcacgtattt ttgtaattcc gctaatcgtg ctgggcttgg ttcttggtca ggtgaaaggc
     2461 cggcgattgc cacttgatgc aagtcatact cttttgctaa atattggaag gctgcatgtt
     2521 gggttacgaa atcgcgttgt tttgctcctt caaaagctgt tttaaatttg ttgtcgagtg
     2581 tttttaattt ctctttatat gtttctgcgt tctttttgta tgtatctgca tttgttttat
     2641 ctgcttttgt aagaccgttc tggatattag tcacttcttg ttcggcaagg actgggctta
     2701 gccatacgtg aggatcatgt tcatggtggt gtccttcttc gtgctcatga tcatggtctt
     2761 cttcttcggt tccttctact agctcgattc ctttactcgc gtaaatcacg gttaattttt
     2821 tcgaatctaa gcttttaagt acgctcggca cccaagtttc catgtcttca ctgttataaa
     2881 cgaaaacatc agccgcttcg attttggcaa tatcctttgc gcttggctcg taatcatgcg
     2941 gttctgtccc cgcatcaatc aacatttcaa tggaagcatt atctcccgca acatttttcg
     3001 taaaatcgta cattggataa aaagttgtca ctaccttgag cttgtcctta tctccactta
     3061 ctttattgtt gctagcaccg catccggcca aaactaaaac gaacgccaac actgttacaa
     3121 ctaaaaatga ccattttttc atattacctc tcctttttcg taatgattac gatttaaaac
     3181 ttaaagttac actatgtaaa ttatgattgc gtatcgcaaa acgtaatcat tcttatttgc
     3241 acaaaatatc ttatcacggg attatttttg cgtcaagcag tttttttgcc aaatcattaa
     3301 cttgacttat cttatcggaa tacttataat aacgataaat acacagatag aaggggagaa
     3361 aaccatgcat tttttaaaga aaacattgcc tatttttgcc attttgacag tacttttact
     3421 tacagcttgc ggaaatgaca atgaaaaatc tacgacaaaa acttccccgg acaaaattaa
     3481 atttcttgaa accagtgaat tactgacttt aaatacgaca gctgaggaag actttgctag
     3541 cttcaccgcg caaaaccaag tcttcgaggg attatacaca cttgatcaaa aagataactt
     3601 tgttcctggg gttgctgatg gaatgccaga aatcagcgct gaccaaacga aatacaccat
     3661 taaattaaag aaaaatgcga aatggtccga tggttctcaa gtaaccgctg atgatttcgt
     3721 ctacgcgtgg cgccgtgccg ttgatccaaa aaccgcacct ggatactccg cgctcttcaa
     3781 agattcgatt aaaaacgcca ctgaaatcaa tgaaggcaaa ctacctgtaa ctgaccttgg
     3841 tgtcgttgct actgacccaa caacgcttga aatcacacta aaaaaaccag ttccctactt
     3901 catttcactt ctttcttttg aaacattttt cccacaaaaa gaaagctttg tgaaaaaaca
     3961 aggcgacaaa tacgggacag atagtgcgca cactttgtac aatggtcctt ttgttatgaa
     4021 ggattggggc ggcaacatta cgaataaatg gacttacgcg aaaaacgacc aatattggga
     4081 caaagataat gtcaaagtaa atgaaattga tgtgcaagtc gcgaaagata ttaatgccgg
     4141 cgtgaacctt tataatacaa acgaagctga ccgcgtgcca ctttcaggcg attttgcgaa
     4201 acaatacaaa gacaagaaag atttccaaac ggaaaaagat gcgctcatca gttatttgcg
     4261 catgaatcaa aaacgcgacg gtaaagcgac tccacttgcg aacaattcct tgcgtcacgc
     4321 gcttaattta gctgtcgata agaaacaatt aacggatcgg attctcgggg acggctcatt
     4381 cccggcgaat ggactgcttc caaaagattt cgtccaaaac ccaacaacgg gcgctgattt
     4441 ccgtacagat agcggcgacc atttagttta taacaaagaa gaagctttaa aatattggaa
     4501 acaagcacaa aaagaacttg gcactgacaa agtaacaatc gaacttctcg gcgatgacca
     4561 agaaacaacg aaaaccattt tcgcttattt gaaagcgcag tttgaagata atttgcctgg
     4621 tgtgacgatt aaagtgaaaa atatgccttc gaagagcgcg acacagctaa cttctgatgg
     4681 taattatgac ttgtcactgg ctgcttggat gcctgatttt aaagatccgt ggacgtatag
     4741 cagcttattc ttatccgatt actttaataa ccatatgagt tacaacagcc ccgcttatga
     4801 taaacttgta aaatcaactg atacaacact tgcgacgaag cctgaagaac gttggaatgc
     4861 gttcgtagct tctgagaaag ttctgcttga tgatgacgcg gcgatcttac cactttatca
     4921 acatcaaaca gcagtgttgc aacgtacgga tattaccggc gtgcagaaac atgcttttgg
     4981 ttcgccttat agttataagt ttattcgggt ggagaagtaa ttcgccagtt tggaaaaagc
     5041 cagcaatttt aaaaattgct ggctttttga tttataaatt ctatctttgc aagtaagcgt
     5101 gtatcttatt tactaacgac accaatcaga taaatgaact taatttatat attaaaaagt
     5161 atcgcaaata taacaatagg ctggaacata taggattctg aaaagcctca agtgttccaa
     5221 cctattattt aatcattaat atttaacgga atttcttctt tcttattttc ggataagtcg
     5281 tggtatgcct tttattctta ttcgtattca atatagattt tactaaatcg attattttca
     5341 aaaaatgaaa taattgtttt aactacttcc tctaaatcat ctttcattga agtctgattg
     5401 attttgctaa tatcaaaaca ttttaattga gtaatggtaa gagagttatc ttcaatcatc
     5461 cacggtgaat catcatacca tccctcatga ttaaagaatt ctttcagaac tccctctctt
     5521 tctacattac aatctaataa gttatctaaa atagtctcaa aataaccgtt ccaaattaca
     5581 agtttattat caccagcaac gaaggaaatc tctgcttctc cttcaaaacc ttcataaaac
     5641 ctactattaa tcatttagtt cattccttcc aatgaccttt atctaaaatt tttatttgtt
     5701 ctggagtagc atttcctgct tttcttgcgt ttatagcatc ataccattta tatccttcta
     5761 cccactcatc atcaccaatt ttgaagaatg tttgtggctt gtcccctcca tttccaggaa
     5821 ctgttctttg gacaacccat gtattcccct gctctaaagg tgcttctgga gttcttgtat
     5881 gccatcgcac ttcatactta aattgaccat cattccattt ataagtaatt tgttcatagc
     5941 cagctttttt tgtctgggct tttattttag cgttatctgg aattgcgatt ggtgcttttt
     6001 tcttgtattt atttgctagt ttcaattgtt ccttttcgga taaagtagat agtttgggtg
     6061 ctttcgaacg cctattctta atattgttta ataatttttt aggaatcttc aatttttttc
     6121 ctttataccc accagaagtg tagtaaaaga taaagccact tataatacta aacccttgcg
     6181 ctttacttat ctcttgccca gtaaccgggt ctattccttc tttcaccgat tgaataactg
     6241 cctgcaacaa ctcggcttct tcttgcgctt cattgctttc atgtggtaat tccccgttaa
     6301 gcacggcggc attgtacgcg ttcgttgctt caacatctac tataccattt ttcattagca
     6361 cccacatttg accacggtac gttttttgat attcgtcaaa attgaatgtt gtttcgttgt
     6421 tttttagcgc ttttcctaag gcgttttgca tccgaggcta tgaggaaggt tttgaaagtg
     6481 aagtaaataa agaatatata ctgctacata gagaatgatt ggaatgagtt aactttaaat
     6541 gtcaaaaata ttgaataaaa caaaggacac ctttatatat tctaaaggtg ccctttgttt
     6601 tatt
//
LOCUS       DASEAA010000141         6585 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.141, whole genome shotgun sequence.
ACCESSION   DASEAA010000141 DASEAA010000000
VERSION     DASEAA010000141.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6585)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6585)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6585
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.141"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..118
                     /locus_tag="U0342_002282"
     CDS             <1..118
                     /locus_tag="U0342_002282"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2423622.1"
                     /translation="GLRLGHNASSDVMYQYSTSKTTLSTNDKQSYDAAYKKY"
     gene            134..754
                     /locus_tag="U0342_002283"
     CDS             134..754
                     /locus_tag="U0342_002283"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465178.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2423623.1"
                     /translation="MKKTTMGIIASAISILTIGCFLTINTYAEKAEPKKKEVPTYAIF
                     SDYTLDVDNPDEVVEDADYVFVGKVTEETGTIYKNKTPIEQEDGSIEYIGEAYTNYKV
                     EVISNLKNELTLNKEIALEKQGGIREDGSAYDVFEDDQLPEEGEIYIFTAYTQDDGSL
                     LVAGGNSTISFDEKTKNIDTEKEVSKTEEFELYEEAVENQVTSNEN"
     gene            1158..2927
                     /locus_tag="U0342_002284"
     CDS             1158..2927
                     /locus_tag="U0342_002284"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465177.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2423624.1"
                     /translation="MKIYKALGWFFKENWKSYAFGVTILFTIALLQLVPPQIIGYTVD
                     AVTNDSLTKDKLIKWMIILVVAAILAYGGRYVWRMLIFGSDNKLQRTLRLRLFEHFTK
                     MSPFFFQRYRTGDLMAHATNDITAIQQVAGIGVLTLSDSVLTGGTVIATMAITIDWRL
                     TLIALLPMPFMVLGSSILGKKLHDRFHGAQAAFSMLNDKTQESISGIKVTRTFGQEKE
                     DIQDFAKQTKEVVQKNISVAKVDAMFDPMISIIVGISFVLSLGFGAKFVVDGELTIGQ
                     VIAFSNYLFLLIWPMLAFGFLYNIIQRGNASYDRVQHLLAEKEDVLDQEGALDTVPVG
                     DLQVAMDKFTYPDESEPVLSDIHFELKAGETLGIVGRTGSGKTSLLKLLMREYDTYEG
                     KIAFANVKIQDYTVRALREAIGYVPQDQFLFSTTVRDNIRFGKPDAPQEEVTKIAKLV
                     AVDEDILGFENGYDTIVGERGVSLSGGQKQRLAIARALIMNPELLILDDALSAVDAKT
                     EEQILANLKENRSDKTTIISAHRLSSVEHANLIIVIDKGQIVERGTHKELMALDGWYA
                     EMFHEQQLEEALEEGGAADGSDE"
     gene            2911..4716
                     /locus_tag="U0342_002285"
     CDS             2911..4716
                     /locus_tag="U0342_002285"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423625.1"
                     /translation="MEAMNEQDEMLVMSGKEHREVLKRMLSYTKYHIPSLIWTGVLVL
                     LVTLADVFAPILIKIFLDDYLTPMNLEMQALLILGAGYLGLTIGKSVVWYFQLLFFQK
                     IALEIVQQMRIDIFTKLHSLGMRYFDKTPAGSIVSRVTNDTEAVKDMFINVLSTAIQS
                     LFMLVGIYAAMFALNVQLALYSLLLFPLIVFIIFVYRKYSSQFYRARREKLSQLNAKI
                     AESISGMSIVQQFNQERRLVKEFEKINKDYYDVGMKNIKFNALLLGPAIDLIYALAVV
                     IILSFFGAESLIGPVAIGTIYAFISYFDRFLEAIYNVMERLAMYQEAITAASRVFRIM
                     DETEEVPAQLNDPEAKITRAKIEFKDVSFAYEGGRDVLKNISFTAEPGQTVALVGHTG
                     SGKSSIINLMMRFYEFERGDILIDGKSIKSHEITELRKKTGLVLQDSFMFYGDINTNI
                     RLYDKSITDEQIVDAAKFVQADGFIQTLSDEYNHKVIERGASFSSGQRQLISFARTVV
                     TNPQILVLDEATANIDTETESLIQTGLKRMREGRTTIAIAHRLSTIKDADLILVLSKG
                     RIIERGTHDTLIAEEGVYHSMYQLQNSGMDLDEAL"
     gene            4797..5285
                     /locus_tag="U0342_002286"
     CDS             4797..5285
                     /locus_tag="U0342_002286"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CcdC family protein"
                     /protein_id="HEM2423626.1"
                     /translation="MSLIISIIITLVFGAGIIMIRMKASKRPASVKGIIIPPIMMSTG
                     ALMFVIPFFRVSWVDILEAIAMGLVFSVILIWTTKFEIRHKYVFIKRTKAFPVILMGL
                     LLIRIFIKYWISGSLEVGELSGMFWIMAFAMIVPWRIVMYFQYKNTEKELNKVEVSGE
                     YE"
     gene            5459..5974
                     /locus_tag="U0342_002287"
     CDS             5459..5974
                     /locus_tag="U0342_002287"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465174.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423627.1"
                     /translation="MKKWLLVVLTLALGLSLAACSGSNSSDKKEDTKKETTSDKDKVL
                     NYYMDLVDVVNENNGDYNAYVGAVGADPKPSEADLAALAKPASESALKVSEALASEKT
                     PDLGKSTDDFKAAVKQLSDAYKLEADALKASGRDTTKADEAMAKADEAIAGVLKDAGL
                     NPSSITTDTAS"
     gene            complement(6016..>6585)
                     /locus_tag="U0342_002288"
     CDS             complement(6016..>6585)
                     /locus_tag="U0342_002288"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465172.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-acyl-sn-glycerol-3-phosphate acyltransferase"
                     /protein_id="HEM2423628.1"
                     /translation="LIIIGGRFQVQNKDKIIEAPYVVVSTHTSWIEILYLGFALSPTP
                     VHYMAKQELFKGKFLNWLMTHLNAFPVNRDNPGPSAIKAPIRMLKSGKVVGIFPSGTR
                     KTTNLHLKRGAVTIAHKAKVPMLPAVYDGPKTFGEILKRKKIIIRFGDPVLFNDTELD
                     QKELLEVKSQELMATFEQLQNEINQTKNK"
BASE COUNT         2101 a         1021 c         1445 g         2018 t
ORIGIN      
        1 cggcttgcga ctcgggcata atgcttctag tgacgtaatg tatcagtata gcacgtccaa
       61 aactacttta tctacaaatg ataaacaatc ctatgatgca gcatataaaa aatattaaaa
      121 aggggtacta acattgaaaa aaacaactat gggaataatc gcttcagcaa ttagtatttt
      181 aactatcggg tgttttttaa caataaacac atatgccgaa aaagctgaac caaagaagaa
      241 agaagtacca acatatgcca ttttttctga ttatacactg gatgtagata atccagatga
      301 agtggtcgag gatgcagatt atgtgtttgt agggaaagta acagaagaaa ctggaacaat
      361 ctataaaaat aaaacgccaa tcgaacaaga agatggttca atcgagtata ttggtgaagc
      421 ttatacaaat tacaaagtag aagtcatttc gaatttgaag aatgaactaa cgctgaataa
      481 ggaaattgca cttgaaaaac agggtggtat tcgtgaagat ggttctgctt atgatgtttt
      541 tgaagatgac cagttaccag aagaaggcga aatctatatt ttcactgctt atacgcaaga
      601 cgatggatca ctccttgtag caggtgggaa ttctaccatt tctttcgatg aaaaaacgaa
      661 aaacattgat acagaaaaag aagtgagcaa aacggaagag tttgaattat atgaagaggc
      721 cgttgaaaat caagttactt ccaacgaaaa ttaaataagc cattataaag catagcgatt
      781 ctggcatgaa tcgttatgct tttttatata gtcgaaggat ttcgagaaaa agcctaataa
      841 aaataatttt taaacaattt gcaattattt gttgcgcttt caaaaaaaat cggttaaact
      901 aataacgttg cataataaaa caaaggagga atggacgatg aataattata tgaagacttc
      961 aaacaaggca ttattgcgct taaaaataga atttatttca ccggatcatt tcacgaacaa
     1021 gggaactctc ctttaatttg gttttatttt atacaaagtg gtgacaaata aatatatttt
     1081 ttcgggtaat aatgggcaga aataggtcca ttatttttat ttgtccaatt ttaaggagaa
     1141 aagggaggga ttgttgtttg aaaatttata aagcattggg ttggtttttt aaagaaaatt
     1201 ggaaatctta tgcatttgga gtaaccattt tgtttacgat tgcgctttta cagttagttc
     1261 cgccgcaaat tattggctat acggttgatg ccgtaacgaa cgactcactg acaaaagaca
     1321 aattgattaa atggatgatt attctagttg tagcagcgat tcttgcatac ggtggtcgct
     1381 atgtttggcg gatgttaatt tttggttctg ataataaatt acaacgcact ttacgtttac
     1441 gattatttga acattttacc aagatgtcgc catttttctt tcaacgttat cgtactgggg
     1501 atttaatggc ccatgcgacg aatgatatta cagctattca acaagttgcg gggattggcg
     1561 ttttgaccct atcagattct gttctaacag ggggaacggt tattgcgaca atggcaataa
     1621 cgattgattg gcgcctaacc ttgattgcat tacttccaat gccgtttatg gtactcggaa
     1681 gttcgatttt aggtaaaaag ttacacgacc gtttccacgg ggcacaagct gctttttcaa
     1741 tgttgaatga taaaacgcaa gagagtattt ctggcattaa agtaacacgg acatttggac
     1801 aagagaaaga agatattcaa gattttgcaa aacaaaccaa agaagtcgtt caaaaaaata
     1861 tttctgtcgc taaagtggat gcgatgtttg atccgatgat ttccattatt gtggggattt
     1921 catttgttct ttcactagga tttggcgcga aattcgttgt ggatggagag ttgactattg
     1981 gacaagtgat tgctttttcg aactacttat tcttattaat ttggccgatg ttagcatttg
     2041 gatttttgta caatattatt caacgcggga atgcttctta tgatcgtgtg caacatttac
     2101 tcgccgaaaa agaagatgta cttgaccagg agggcgcact agatacggtt ccagttgggg
     2161 acttacaagt tgcaatggac aaatttacct atcctgatga gagtgaacca gtcttgtcag
     2221 atattcattt tgaattaaaa gctggggaaa cactgggtat tgttggtcga actggttctg
     2281 ggaaaacatc cttattaaag cttttaatgc gagaatatga tacgtatgaa ggtaagattg
     2341 cttttgctaa cgtgaaaatt caagactata cggttcgagc tttacgagaa gcaattggct
     2401 atgtgccgca agatcagttt ttattctcca caacggtacg agataatatt cgttttggaa
     2461 aaccagatgc accgcaagaa gaagtgacga agattgcaaa gcttgtggct gtagatgaag
     2521 atattcttgg ttttgaaaat ggctatgata cgattgtcgg cgagcgcggg gtttcactct
     2581 ctggtggtca gaagcagcgt cttgctatcg cacgagcgct aattatgaat cctgaattgc
     2641 ttattttaga tgatgcactt tcggcagtag atgcgaaaac agaagaacaa attttagcta
     2701 atttaaaaga gaatcgttcg gataaaacga caatcattag cgcacacaga cttagctctg
     2761 tcgaacatgc gaatctaatt atcgtgattg ataaagggca gatcgtggaa cgtggaacgc
     2821 ataaggaact aatggcttta gatggctggt atgcagaaat gttccacgag caacaactgg
     2881 aagaagcact agaagaaggg ggtgcagcag atggaagcga tgaatgaaca agatgaaatg
     2941 ttagtgatgt ccggtaaaga acatcgcgag gttttaaaaa gaatgcttag ttataccaaa
     3001 tatcatattc cgagtttgat ttggacaggt gtgcttgttc ttctcgtaac gcttgcggat
     3061 gtctttgcac caatcttgat taagatattt ttggatgatt atttaacacc gatgaatttg
     3121 gaaatgcagg ctttgctaat tcttggtgcg ggatatttgg gacttacgat tgggaaatca
     3181 gttgtttggt atttccaact gctgttcttc caaaaaatcg cgcttgaaat tgtgcaacaa
     3241 atgcggattg atatttttac aaaacttcat tcgctaggta tgcgttattt tgacaaaacg
     3301 cctgcaggaa gcattgtgtc gcgcgtgaca aatgataccg aagcggtgaa agatatgttt
     3361 attaatgtgc tttcaacagc gatccaaagt ttgtttatgc ttgtagggat ttatgcggcg
     3421 atgtttgcgc tcaatgttca attagcgtta tatagtttgc tgttattccc acttattgtc
     3481 tttattattt ttgtttaccg gaaatacagt tcgcagtttt accgggcgag acgagaaaaa
     3541 ttaagtcaat taaatgcaaa aattgctgag tcgatttcag gaatgtcgat agttcaacaa
     3601 tttaatcaag agcgtcgttt agtaaaagaa tttgagaaaa tcaataaaga ttactatgac
     3661 gtcggaatga aaaatatcaa atttaatgcg ctattacttg gaccggcgat tgatttgatt
     3721 tacgcgttgg ctgtagtgat tattcttagt ttctttggtg cagagtcatt aataggaccg
     3781 gtagcgattg gtacaattta tgcctttatt agttactttg atcgtttttt agaagctatt
     3841 tataatgtaa tggaacggct agcaatgtat caagaggcga ttacggcggc ttcccgagta
     3901 tttcgtatta tggatgaaac agaagaagtg ccagcccaat tgaacgatcc agaggcaaaa
     3961 atcacacgcg ctaaaattga gtttaaagat gtttcgtttg cttatgaagg tgggcgtgac
     4021 gttcttaaaa atattagctt tacggctgaa ccaggacaaa cggtggcgct tgttggccat
     4081 actgggagcg ggaaaagttc cattatcaat ttaatgatgc gtttttatga atttgaacgt
     4141 ggcgatattt taattgatgg taagtcgatt aagtctcacg aaattacaga actgcgtaag
     4201 aaaactggac tagttttgca agatagtttt atgttttatg gggatattaa tacaaatatt
     4261 cgcctctacg ataaaagcat tacagatgaa caaattgtgg atgctgcgaa atttgttcaa
     4321 gcggatggct ttattcaaac attatccgat gagtacaacc ataaagtgat tgagcgaggg
     4381 gcttcgtttt caagtgggca aagacagctg atttcatttg ccagaacggt tgtgacgaat
     4441 ccgcaaattc tcgttttaga cgaagcgaca gcgaatattg atactgaaac agaaagctta
     4501 attcaaactg ggttaaaacg aatgagagaa ggacgtacga cgattgcgat tgcgcatcga
     4561 ctttcgacaa ttaaggatgc cgatttaatt ttagttttat ctaaaggacg aattattgaa
     4621 cgtggtacac atgatacatt aattgcagaa gaaggagtgt accattccat gtatcaatta
     4681 caaaatagcg gaatggattt agacgaagca ctttaagcag agaagtttat ttcaaacggt
     4741 aaaaggaata taatgaggag cgaagtgtta cagcagatta gtagggggaa ttaaaagtgt
     4801 cattaatcat ttcaattatc attacacttg tttttggagc tggaattatc atgataagaa
     4861 tgaaagcatc gaagcgtcca gcaagtgtga aagggattat cataccacca attatgatgt
     4921 caacaggcgc tctcatgttt gttattcctt ttttccgtgt ttcgtgggta gatattttag
     4981 aagctatagc aatggggctt gtgttttctg ttattttaat ttggacaaca aaattcgaaa
     5041 ttcgtcataa gtacgtattt attaaacgta caaaagcttt tccagttatt ttgatgggac
     5101 tgttactcat tcgaatcttc atcaagtact ggattagtgg tagtctggaa gtgggagagt
     5161 tgtctggaat gttctggata atggcgtttg cgatgattgt accttggcga attgtgatgt
     5221 atttccaata taaaaatacc gaaaaagagc ttaataaagt agaagttagt ggagagtacg
     5281 aataatagtg aaagcatttt ctaaaacagc ttgaattatt ccgtatgaat agcttataat
     5341 gaataatgtt acatcgtgag taatgttact tgccggatgg gtgaagcata tccgagactg
     5401 acgcggccag ttacaaaagg gcttccgagt ttggcttgaa aaaaaggagg acatcatctt
     5461 gaaaaaatgg ttattagtag ttttaacttt agcactagga ttgtcgcttg cggcttgttc
     5521 cggttctaac agttctgaca aaaaagaaga cacaaaaaaa gaaacaacaa gtgataaaga
     5581 caaagtacta aattattaca tggacttagt agacgttgtt aatgaaaaca atggcgatta
     5641 caacgcttat gtaggagcag ttggcgcaga tcctaaacca tctgaagcag accttgcagc
     5701 tcttgcgaaa ccagctagtg aatcagcact taaagtatct gaagcacttg ctagtgaaaa
     5761 aacaccagac cttggtaaat ccacagatga tttcaaagca gctgtgaaac aattaagtga
     5821 tgcttacaaa ttagaagcag acgcacttaa agctagtggt cgtgatacaa caaaagcaga
     5881 cgaagcgatg gcaaaagcgg acgaagcaat tgctggcgta ttaaaagatg ctggacttaa
     5941 tccttcaagc attacaactg atacagcttc ctgataataa aaaagacagt ttcctaatgg
     6001 aagctgtctt ttttattatt tattttttgt ttgattaatt tcattttgaa gttgttcaaa
     6061 agtcgccatt aattcttgag atttaacttc tagtagctct ttttggtcaa gttcggtatc
     6121 attgaataat accggatcgc caaaacgaat aatgattttt ttgcgtttta aaatttctcc
     6181 aaatgttttt ggcccatcat aaacggcagg tagcattgga acttttgctt tatgagcgat
     6241 agttactgca ccgcgtttta aatgaaggtt ggtcgttttt ctagttccac tcgggaaaat
     6301 cccaactact ttaccggatt ttaacatccg gattggggct ttaatggcgc ttggtccggg
     6361 gttatcgcga ttgactggaa aggcgttaag gtgcgtcatg agccagttaa ggaatttacc
     6421 tttgaaaagc tcttgtttcg ccatataatg taccggtgtt ggcgataggg cgaaaccaag
     6481 gtataagatt tcaatccatg acgtatgcgt ggacacaaca acgtatggtg cttcaatgat
     6541 tttgtctttg ttttgtactt gaaatcgtcc accaataata attaa
//
LOCUS       DASEAA010000142         6583 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.142, whole genome shotgun sequence.
ACCESSION   DASEAA010000142 DASEAA010000000
VERSION     DASEAA010000142.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6583)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6583)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6583
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.142"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..743
                     /locus_tag="U0342_002289"
     CDS             <1..743
                     /locus_tag="U0342_002289"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423629.1"
                     /translation="NQQSIYVHIDHVINNVATSGISFCDFLNGVGQPPENILLIKHNI
                     EDASYNAHTAFHYLEPGDLANISKENFNPLCWIDFEDVELLNQLTPQEVAEMLYLAHT
                     GRHLRSPFYYKLQNNFVYLTREDGRYNKVYYRNLNHFYMLLSYVIARKTAELVNEKGI
                     FSFGKKKYVAEPPVELLKKMADHFKDGACIALDDVVRTRTQIEVPIGHGLTEEMTELE
                     ISSKIYYEEEVAKLVYDLKQNEWKYIEK"
     gene            823..1377
                     /locus_tag="U0342_002290"
     CDS             823..1377
                     /locus_tag="U0342_002290"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2423630.1"
                     /translation="MTKKLIKEVALTLFAEKGYDGTALSEIAKAVGIKTPSLYAHFAS
                     KEALFLEVYQDSIQMELTELGKVAERDDLVGEKKLQSIFFVATDFSSNPDEKKFFQRA
                     VFYPPKSLFQELKEETKTYEQLTNRILRETLEKIVSEEALVRWMHVFYALLDGLSVEH
                     GIYDETEFELRRKSAWAVLASLLK"
     gene            1394..1735
                     /locus_tag="U0342_002291"
     CDS             1394..1735
                     /locus_tag="U0342_002291"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEM2423631.1"
                     /translation="MAWFYLIMAGLSEIVWAFGLKESHGFTMLGWSLLTIAFLIVSFG
                     LFSISMKSIPIGTAYAVFTGIGAAGTAIIGMIFLSEGVSFWKIVSLIVLLTGIIGLKL
                     VDGNESEKEAK"
     gene            1738..2058
                     /locus_tag="U0342_002292"
     CDS             1738..2058
                     /locus_tag="U0342_002292"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux SMR transporter"
                     /protein_id="HEM2423632.1"
                     /translation="MDWIFLLVAGLCEMVFVVMLKLSDGFKKVGYAILTIIFMSASFF
                     LLSLALKTIPIGTGYAIWTGIGAVGSVTLGMIVFKERKSVGKLLFITMIIAGVVGLKL
                     TSGV"
     gene            2208..3320
                     /locus_tag="U0342_002293"
     CDS             2208..3320
                     /locus_tag="U0342_002293"
                     /EC_number="6.3.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464381.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="D-alanine--D-alanine ligase"
                     /protein_id="HEM2423633.1"
                     /translation="MKTKLILLYGGKSAEHEVSLQTAFSVINALDLEKFEAAPIYITN
                     EGEWIQGPLLSGKLDFVEQLRFSATDTIKLATTESEKSEGEAISPAVLEADGQETVVF
                     PLLHGPNGEDGTVQGLFEVLNIPYVGNGVLASSAAMDKIVMKKIFADAGIPQVPAVAV
                     RLIDWKNYQAEMVAEMEEVLTYPVFVKPANLGSSVGISKATNKKELADAMTEAFLYDR
                     RVVVEQGVVAREIEMGVLGNDTPVCSVPGEILPEGAVATFYDYKAKYQDNNTALIIPT
                     EVDPEILEQMKEYAVQAFLGLDASGLVRADFFLTEDNQLFLNEVNTMPGFTPYSMYPL
                     LWQETGLPYGALIERLVDLAKERHAAKNALKYKLED"
     gene            3384..4757
                     /locus_tag="U0342_002294"
     CDS             3384..4757
                     /locus_tag="U0342_002294"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464382.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-
                     alanine ligase"
                     /protein_id="HEM2423634.1"
                     /translation="MKKTVGEVVAMLDSSIHVDAFRDVVITGVCFDTRQIKSGDLFVP
                     FVGNVRDGHEFVSQAREMGAVATFWQKDVPNPPMDFPVILVEDTLLALQELAAKYIQQ
                     VKPKVIAITGSNGKTTTKDIMAAIVETTYKVHYTGGNFNNHIGLPYTILTMPEDTEVA
                     VLEMGMNHRHEIEVLSKIAKPDIAIITNIGEAHIEYLGSREEIAKAKLEITAGLNPSG
                     ILIYPHEETLLLGNINGDFRQLTFGKSEAAEIYPLEIRAEAEGTSFITNWEPELEIFV
                     PIIGEHNVFNTMAAMLAAREIGIEGEKIQSALKNMERSKSRLEWITTKSGARILNDAY
                     NSSPTALKTVLKTFMHMDSSGKPKYLVLADMLELGDLSTKLHQESAEVLEKGMIEKIF
                     LYGEAMKAFGDIAEAKIGQGKVHHFNTKESLETALLSEMNGNEWILVKGSYGMGLKDV
                     VENLIIK"
     gene            4824..5537
                     /locus_tag="U0342_002295"
     CDS             4824..5537
                     /locus_tag="U0342_002295"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464383.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta fold hydrolase"
                     /protein_id="HEM2423635.1"
                     /translation="MVACLCIHGFTGSPSEVKPLADYLREHTDWDVLAPTLPGHDHLR
                     HLKNVTYKDWIVFVDSILSQMLKEDDEVYIIGFSMGGLLAGWLARHYPEVKKLVLLST
                     AVNAMEWPQLVENSKQVLTEAKEVTLKNSPMFKRYQKKVTETPWTSTLQFKKMVALAK
                     PVFEHIEIPTFIAQGSADQVVPAEKSVNFLMESIPGPKELFILEGSKHVICQDEQADK
                     LFAAVLTFLQKDVAVLNAQ"
     gene            complement(5549..6574)
                     /locus_tag="U0342_002296"
     CDS             complement(5549..6574)
                     /locus_tag="U0342_002296"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464384.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2423636.1"
                     /translation="MKKVTMQDIADRLNITKNSVSQALGNKNGVSEQTKLAVFKMADE
                     LGYKYKREIAREVVKEKFALLATSFALSQRSFFGEIIDNMKQSIIAHQAELIIFPVTD
                     EEASTNQLPEQLTSENWTGIFLLSHINTDYSKKVIDLGMPVVLIDHHDPHLKADAVIS
                     QNKDGAFMAVEFLIQNKHQKIGFLGDVTFSPSYEERLEGYKKALHYYHIPFNEKYAIT
                     RIKEEQTTLYRTLDELDELPTAWFCVNSGLGFILNTYLQSKGYNIPNDLSIICFDNTE
                     FTVLSNPQLTTMCTNLSYMGEKAVELMYNRIRKPDEGFVHLALATNLIARDSVGENKK
                     ADSASES"
BASE COUNT         2067 a         1084 c         1437 g         1995 t
ORIGIN      
        1 ttaaccaaca atctatttat gtgcatattg atcatgttat taataatgtg gcgacaagcg
       61 gcatttcttt ttgtgatttc ttaaatggcg tgggacagcc ccctgaaaat attttgttaa
      121 ttaagcataa tattgaagac gcatcctaca atgcacacac agcttttcac tacttagagc
      181 caggcgattt agcaaatatt tccaaagaga attttaatcc actgtgttgg attgattttg
      241 aagatgtaga acttttgaac caactaaccc cacaagaagt agcggaaatg ctttatcttg
      301 cacatactgg gcgtcatttg cgctcaccat tttattataa attacaaaat aattttgttt
      361 acttaactag ggaagacggt cgttacaata aagtatatta tcggaatctt aatcattttt
      421 atatgttact aagttacgtc attgcacgta aaacggcaga actagttaat gagaagggta
      481 ttttttcgtt tggtaagaaa aaatatgttg cggagccgcc agttgaactt ttgaaaaaaa
      541 tggcagatca ttttaaagac ggtgcttgta ttgcgctcga tgatgtcgtg agaacgcgca
      601 cacaaatcga agtaccaatt gggcatggac tcacagaaga aatgacagaa ctagaaatct
      661 cttctaagat ttattatgaa gaagaagttg caaaattagt gtatgattta aaacaaaatg
      721 aatggaaata tatcgaaaaa taaaaaatca aactttttcc tttacgtttg gttttttatt
      781 tgttaaaatt taactaatga acgttagtta ggagggtgct ttatgacgaa aaagctaatc
      841 aaagaagtcg cattaactct ttttgcagaa aaaggctatg atggaacagc gctttcggaa
      901 atcgcgaaag ctgttggaat taaaacacca tcgttatatg cccattttgc atcaaaagaa
      961 gccctatttt tagaagttta tcaagatagt attcagatgg aattaacaga actagggaaa
     1021 gtagcagagc gagatgattt ggttggggaa aagaagctac aatctatttt ctttgtagcg
     1081 acagattttt ctagcaatcc tgatgaaaag aaatttttcc agcgtgccgt cttttatcca
     1141 cctaagtcgc tttttcaaga attaaaggaa gaaacaaaga catatgaaca actgacgaat
     1201 cggatattac gcgaaacgtt agaaaaaata gtatccgaag aagcacttgt aagatggatg
     1261 cacgtttttt atgcacttct tgatggactg agtgtggaac acggcattta tgatgaaacg
     1321 gaatttgagt tgcgaagaaa atctgcttgg gcagttctcg caagtttact caaatgaatt
     1381 ggaggtaagg aaattggctt ggttttattt aattatggca ggattatcag aaattgtttg
     1441 ggcttttgga ctaaaagaat cgcatggttt cacgatgtta gggtggagcc ttttgacgat
     1501 agcatttttg atagttagtt ttggtttgtt ttcgatttcc atgaagtcca ttccaattgg
     1561 gacggcgtat gcggttttta ctggaattgg ggctgctggg acagcgatta ttgggatgat
     1621 tttcctttca gaaggtgttt ctttttggaa gattgtttcg cttatcgtat tattaacagg
     1681 gattattggt ttgaaattag tggacggcaa tgagtctgaa aaggaggcta aataacgatg
     1741 gattggatat ttttactcgt agcaggttta tgcgaaatgg tcttcgttgt catgctaaaa
     1801 ttatcagatg gctttaaaaa ggttggatat gcgatactga cgattatttt tatgtctgca
     1861 agtttctttt tactatccct cgcgcttaag acgattccaa tcggtacagg ttatgcgatt
     1921 tggaccggaa ttggtgccgt tggtagtgtg acacttggaa tgattgtttt taaagaacgt
     1981 aaaagtgtcg gcaaattgct ctttattacg atgattattg ccggcgtggt cggtttgaaa
     2041 ttaacatctg gtgtttaata ttttaggttg aaaaagtcct ttttggaata agcgtgcacg
     2101 gttcttattt aaaaaagaag attttttcaa cctatttttt agttatacct tttcatcctg
     2161 tcaaaacatg gtaaaataga taaagcgaat aatgacggag gggtattatg aaaaccaaat
     2221 taattttgtt atacggtggg aaatctgctg aacacgaagt ttccttacaa acagcatttt
     2281 cagttatcaa tgctttggat ttagaaaaat tcgaagctgc gccaatatat attacgaatg
     2341 aaggtgagtg gattcaagga ccacttcttt ctgggaagtt agattttgtt gaacaattac
     2401 gtttttcggc tacagataca ataaaacttg caacaactga atcagaaaaa tcagaagggg
     2461 aagcgattag cccggccgtt ttagaagcag acggacaaga gacagtcgta ttcccgcttt
     2521 tacatggtcc aaacggagaa gatggcactg ttcaaggatt gttcgaagta ttaaacattc
     2581 catatgttgg taacggggtc ttggcatctt ctgctgcaat ggacaaaatc gtgatgaaga
     2641 aaatctttgc agatgctgga atcccgcaag ttccagcagt tgctgttcga ttaattgatt
     2701 ggaagaacta tcaagcggaa atggttgcgg agatggaaga agtacttacc tatccagttt
     2761 tcgtaaaacc agcaaacctt ggttcgagtg ttggtattag taaggcaacg aacaaaaaag
     2821 aattagcgga cgcaatgaca gaagcatttt tatatgaccg tcgtgtggtt gttgaacaag
     2881 gtgttgttgc gcgcgaaatc gaaatgggcg tacttggaaa tgatacgcca gtttgctctg
     2941 ttccgggtga aattttgcca gaaggtgcag ttgctacgtt ttacgattac aaagcaaaat
     3001 accaggataa taatactgcg ttaattattc cgactgaagt agatccggaa atcttggaac
     3061 aaatgaaaga atatgcggtt caagcattcc tagggcttga tgcaagcgga ctagtgcgag
     3121 cggacttttt cttaacggaa gataatcagt tattcttaaa tgaagtgaat acaatgcctg
     3181 gtttcacacc gtacagcatg tatcctcttc tttggcagga aacgggctta ccttacggag
     3241 cgttaattga acgattagtc gatttagcga aagaacgcca cgcagccaaa aatgcactta
     3301 aatataaatt agaagactaa aataaacaag aaagcagttt tcatatgcgg aagctgcttt
     3361 tttatggaag agagagattt aatttgaaaa aaacagtagg cgaagtagta gcaatgttag
     3421 atagttccat ccatgtagat gcatttcgcg atgtcgtcat tactggcgtt tgttttgata
     3481 caaggcaaat aaagtcaggg gatttatttg ttccatttgt tgggaatgta cgcgatggac
     3541 atgaatttgt gagtcaagcg cgagaaatgg gtgcagtggc tactttctgg caaaaagatg
     3601 tacccaatcc accgatggat ttcccggtta ttttagtaga agatactttg ctcgcacttc
     3661 aagaactagc ggcgaaatat atccaacaag taaagccaaa agttattgcg attaccggaa
     3721 gcaatggtaa aacgacgaca aaagatataa tggcagcgat tgtagaaaca acgtacaaag
     3781 tgcattatac tggtgggaat tttaataatc atatcggctt accgtacacc attttaacga
     3841 tgccagaaga taccgaagtt gctgtacttg aaatgggcat gaatcatcgt catgaaatcg
     3901 aagtgctttc caaaattgcc aaacccgata tcgcgattat tacgaatatc ggcgaggcgc
     3961 atattgaata tcttggttcg cgtgaagaaa ttgccaaagc aaaactggaa attactgccg
     4021 ggcttaatcc aagcgggatt ttaatttatc cgcacgaaga aactttgctg ctaggaaata
     4081 ttaatggcga tttcagacaa cttacttttg gtaagtcgga agctgcggaa atttatccgt
     4141 tagaaattcg tgcggaagcg gaaggcactt cttttataac taattgggag ccggagctag
     4201 aaatttttgt ccctattatt ggtgaacata atgttttcaa tacaatggcg gcgatgcttg
     4261 cggcaagaga aattggaatt gaaggtgaaa aaattcaatc tgcgctgaaa aatatggaac
     4321 gttctaaaag tcgtttagaa tggattacaa cgaaaagtgg cgcgcgtatt ttgaatgacg
     4381 cttataactc tagtccaaca gcattaaaaa cggttttaaa aacatttatg catatggatt
     4441 cgagcggcaa acctaaatat ttggtccttg ctgatatgtt ggaacttgga gatttgtcga
     4501 caaagttaca tcaagaatca gccgaagtat tagaaaaggg tatgattgag aagattttct
     4561 tgtatggtga ggcgatgaaa gcttttggtg acatagcgga agccaaaatt ggtcagggaa
     4621 aagttcatca ttttaacacg aaagaatcgc ttgagacggc gcttctttca gaaatgaatg
     4681 gaaatgaatg gatactggtc aaaggttctt acggaatggg cttgaaagat gtggtagaaa
     4741 atcttattat taagtaacga ctaaaattgg acagaacata ttaccgctta attggtaata
     4801 atttggacag gaggaaaggc ataatggttg cttgtttgtg tattcatggt tttactggtt
     4861 cgccgtccga ggtgaagccg ctcgctgact atttgcgaga gcatacagat tgggatgttt
     4921 tagcacccac attacctggc catgatcacc tgcgccactt aaaaaatgtg acgtataaag
     4981 attggattgt ttttgtagat agtattttaa gccaaatgct aaaagaagac gatgaagtat
     5041 atattattgg tttttccatg ggtggactgc tcgctggatg gctcgcgaga cattatccgg
     5101 aagtaaaaaa actagtactt ctgagcacag ccgtaaatgc aatggaatgg ccgcaacttg
     5161 tcgaaaattc caagcaagta ttaacggaag caaaagaagt aacgctcaaa aacagcccga
     5221 tgttcaaacg ttatcaaaag aaagtaacgg aaacgccttg gacttccacg ctacaattca
     5281 aaaaaatggt agctttagca aagccggttt ttgagcatat tgaaattcca acttttattg
     5341 cacaaggcag tgccgaccaa gtagttcctg ctgaaaaaag tgttaatttc ttaatggaaa
     5401 gtattcctgg tccaaaagaa ttatttatat tagaaggttc gaaacacgtg atttgtcagg
     5461 acgaacaagc ggacaaatta tttgcagctg ttttaacatt tttgcaaaaa gatgtcgctg
     5521 ttttaaatgc tcaataaaga aaaccgattc agctttcact cgctgaatcg gcttttttgt
     5581 tttcaccaac agaatctcgg gctattaaat tagtagcaag cgccagatga acaaaccctt
     5641 catctggttt tcttatgcga ttatacatga gttcgacagc cttctcaccc atatagctta
     5701 ggttggtaca cattgtagtt agctgtggat tgcttagtac agtaaactcg gtattatcaa
     5761 agcaaataat cgataagtca ttagggatat tatagccttt tgattgcaaa taagtattga
     5821 gaataaaccc aagtcctgag ttgacacaaa accaagcagt agggagttcg tccagttcat
     5881 ctaaagttct atataatgtc gtttgttctt ctttgatacg agtgatggcg tatttttcgt
     5941 taaaaggaat gtgatagtag tgcaaagctt ttttgtatcc ttctagccgc tcttcataac
     6001 ttggagagaa agtaacatca ccgagaaaac cgattttctg atgcttattt tgaattaaaa
     6061 attctacagc cataaaagca ccatctttat tttgactgat aaccgcgtcg gcttttagat
     6121 gcggatcatg atgatctata agcacaacgg gcatgccgag atcgataact tttttactat
     6181 aatccgtgtt tatatgcgaa agtaagaaaa tcccagtcca gttctcgctt gtgagctgct
     6241 ctggtaattg attagtagac gcttcctcat ccgtaactgg aaaaataata agttcggctt
     6301 ggtgagcgat aatgctttgt ttcatattat cgataatttc gccaaaaaaa ctgcgctgcg
     6361 aaagggcgaa agaagttgct aaaagcgcaa atttttcttt cacaacctca cgcgcgattt
     6421 ctcttttata tttatagcct agctcatctg ccatcttaaa aacggctagt ttagtttgtt
     6481 cgctaacccc atttttattg cctaaagctt gcgagactga attcttggtt atatttagcc
     6541 tgtcagcaat atcctgcatc gtaactttct tcatggttcc cct
//
LOCUS       DASEAA010000143         6562 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.143, whole genome shotgun sequence.
ACCESSION   DASEAA010000143 DASEAA010000000
VERSION     DASEAA010000143.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6562)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6562)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6562
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.143"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(160..978)
                     /locus_tag="U0342_002297"
     CDS             complement(160..978)
                     /locus_tag="U0342_002297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465911.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1963 domain-containing protein"
                     /protein_id="HEM2423637.1"
                     /translation="MEQLFDILPSEWAERFLETEKERIELHFKDVGKLSLLQSKAGGR
                     GYLPREQGYPVTEEGKPLSLLTQINFSEMPQMENYPEFGLLAFYVDYQDDLYGLNFEN
                     PTSQEGFRVFFFDDLGSESLTAEEQDAFFEDVAKSDFYPVVNGEFKIAGQVSDQILLQ
                     DSFDFENEFGSNFYELADQIFAEDEDKSEALYQLGKECSQIGGYPFFTQEDPRMYTEN
                     PHHDTLLFQLASEDFDESRMAIMWGDCGVGNFFINKQDLINRDFSNIMYNWDCS"
     gene            complement(1063..2274)
                     /locus_tag="U0342_002298"
     CDS             complement(1063..2274)
                     /locus_tag="U0342_002298"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465912.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2423638.1"
                     /translation="MSKPKIVILGAGYGGLKTLRKLQQRNLEAEIVLVNKNDYHHETT
                     WLHEAAAGTIEPEKLMYPLDKVVNNTKTTFIQDTVVKINKDEKTVTLDANGDISYDYL
                     LIALGSEAETFGISGLKEYAFTITSVESVKKIRAHIEAQFAKWKTDPRDELLTIIVGG
                     AGFTGIEFLGELTNRIPELVKEYDVPREKVRIYCMEAAPKVLPQFDAKLVDYGVGVLE
                     DRGVEFHVGKPVKEATADGVKYAESENEVREIKAATIIWAAGVRGNSVIEASGFEAGR
                     GRVKVNNNLTVPGNEEILIVGDCSLIINPANDRPFPPTAQIAMQQADVAAVNLAKLVK
                     GETDLQDFVYHEKGTVCSLGDNDAIGVVFGKNLKGYPASVMKKVIDDRALLLIGGSGV
                     LASKGKFKFYK"
     gene            2724..3719
                     /locus_tag="U0342_002299"
     CDS             2724..3719
                     /locus_tag="U0342_002299"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465913.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2423639.1"
                     /translation="MDEKTKIYDITIIGGGPVGLFAAFYAGMRNASVKIIESLPQLGG
                     QLSTLYPEKYIYDIPGYPAVRAQELVNNLIQQMKPFDPTIALEEAVQSVEKQVDGTFE
                     IITKKDTHYSKAVIITAGNGAFEPRRLDLPEAEQYEGKNIHYFINDLSRFSGRRVAVC
                     GGGDSAVDWALMLEKVASSVAIVHRRNAFRAHEHSVNNLEKSSIAIKTPFIPTEVLGN
                     GDKLTHITLQEVKGDTRETLEIDDFIINYGFVSSLGPIKNWGLELERNSIVVNSKMET
                     SIPGIYCAGDICTYDGKVKLIATGFGEAPTAVNNAMNFIDPKTRVQPMHSTSLFE"
     gene            3807..4436
                     /locus_tag="U0342_002300"
     CDS             3807..4436
                     /locus_tag="U0342_002300"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2423640.1"
                     /translation="MNVLVIGANGKIGRLLVEKLAMEKGFFVRAMVRKAEQVSELEKL
                     GAKPIIADLKKDFHYAYDEIEAVIFTAGSGGHTPASETINIDQNGAIKAIETAKEKGV
                     RRFIIVSSYGADNPENGPESLIHYLKAKQAADEELKRSGLDYTIVRPVGLSDDPATGK
                     IAEVSEKPTTTIPRADVADFISEALSEKSSFYKTYTIESGDTPIKHFFD"
     gene            complement(4482..4715)
                     /locus_tag="U0342_002301"
     CDS             complement(4482..4715)
                     /locus_tag="U0342_002301"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzB family protein"
                     /protein_id="HEM2423641.1"
                     /translation="MNPIVEFCVNNLASGADAAFAKLDADDSLDVIEYDCLTYCDLCA
                     TSLFALVDGEVVRGETAEELVANIYTFLEENPF"
     gene            complement(4737..5063)
                     /locus_tag="U0342_002302"
     CDS             complement(4737..5063)
                     /locus_tag="U0342_002302"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YuzD family protein"
                     /protein_id="HEM2423642.1"
                     /translation="MVNEAKLYVYGSTTICASCVGAPSSKETEEWLRAAIGRKFSGQP
                     FVVEYVDIFNPPNEKALADMANKIVEEDYMYPVIVVDGEIIAEGNPRLKDIYQVMTDR
                     GYLATM"
     gene            complement(5304..5486)
                     /locus_tag="U0342_002303"
     CDS             complement(5304..5486)
                     /locus_tag="U0342_002303"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423643.1"
                     /translation="MCGGRILREGLHARFTRMHIWPVTRFASNGPNKNTFLRLRKERA
                     LSTGKVERQLGCAPNC"
     gene            6135..>6562
                     /locus_tag="U0342_002304"
     CDS             6135..>6562
                     /locus_tag="U0342_002304"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423644.1"
                     /translation="MQKAIKIMLVLFLMTTVFLPFSNVRAASTDVVNIPDPYLNEGLK
                     SIVGNPFLTELTEANLETISVADISYMNGVPGYAVTGLISDLTGLEKAVNMTKLYFSN
                     QTEIKNLNQIKDLPNLKKIVGVTTGLNDIKALGEMPALEEL"
BASE COUNT         2045 a         1419 c         1087 g         2011 t
ORIGIN      
        1 cttttacttt ttcattaaac aaatgtatct cctcctacta gttttactta gtttagcagg
       61 attagagtta agacctatgt ggaaattaca cactattttg gtatctttat atagatttta
      121 ttacagtgga tatatctata ttcaaaaaat agtacttctt tatgagcaat cccagttata
      181 cataatgtta gaaaaatcac gattgattaa atcttgcttg ttgatgaaaa agttaccgac
      241 accgcagtcc ccccacataa ttgccattct actctcatca aaatcctcag atgctaattg
      301 aaacaaaagc gtgtcatgat gcgggttttc tgtatacata cgcggatctt cttgtgtaaa
      361 aaaaggatat ccgccaattt gactacattc tttacccagt tgatataatg cttcagattt
      421 atcttcatcc tccgcgaaaa tttggtcagc cagctcataa aaattacttc caaattcatt
      481 ttcaaaatca aagctatctt gtaatagaat ctgatctgaa acttgcccag ctattttaaa
      541 ctcaccatta acaacggggt aaaagtccga ctttgctaca tcttcaaaaa atgcatcttg
      601 ttcttcagca gttaagctct cacttcccaa gtcatcaaag aaaaacactc gaaaaccttc
      661 ttggctcgtt ggattttcaa aattaagtcc gtacaaatca tcttgataat ccacataaaa
      721 agcgagtaag ccaaattccg gataattttc catttgtggc atttctgaaa aattaatttg
      781 tgttaataaa gacagcggtt taccttcttc ggtcactgga tagccttgct ctctcggcaa
      841 gtaaccacgc ccaccagctt tactttgcaa caatgaaagc ttaccaacat ccttaaaatg
      901 cagttctata cgctctttct ctgtttctaa aaatcgttcg gcccattcac taggaagtat
      961 atcaaaaagt tgttccatga cttaccttct ttcttttttt ctaattataa catgaaaaaa
     1021 gcgccatatc tgacaaaagc agatacagcg cttcttgaat ttttatttat agaatttgaa
     1081 tttcccttta cttgccaaga cgcctgaacc accaattagt aatagcgcgc ggtcatcaat
     1141 gacttttttc ataacggaag ctggatagcc tttcaagttt ttaccgaaaa cgacaccaat
     1201 tgcatcgtta tcgcctagag agcaaactgt tcctttttca tgataaacaa agtcttgtag
     1261 atctgtttcg cctttaacta atttagctaa gttcactgca gccacatcgg cttgttgcat
     1321 tgcgatttgg gcagttggtg ggaatggacg gtcgtttgct gggttgatga ttagtgagca
     1381 gtcaccaaca attaaaattt cctcgttacc aggaacagtt aaattgttgt ttactttcac
     1441 acgaccacga ccagcttcaa agccagatgc ttcaattacg ctattgccac gaacacctgc
     1501 agcccaaata atggttgctg ctttgatttc acgaacttca ttttcacttt ccgcatattt
     1561 tacgccatca gcggtagctt ctttgactgg tttaccgaca tggaattcta cgccgcgatc
     1621 ttccagtaca ccaacaccat aatcaaccag tttcgcatca aattgtggta atacttttgg
     1681 agctgcttcc atacaataaa tgcgcacttt ttcgcgaggc acatcgtact ctttcactag
     1741 ttctggaatg cgattagtta attccccaag aaactcaatt ccagtaaagc cagcgccacc
     1801 aacgataatt gttaataatt catcgcgtgg atctgttttc catttagcaa attgcgcttc
     1861 aatgtgcgca cggatttttt tgacggattc tacacttgta atagtgaagg catattcttt
     1921 caaaccactg attccaaatg tttctgcttc tgacccaaga gcaattaata aatagtcata
     1981 gctgatatcg ccatttgcat ctagtgtgac tgtcttttcg tctttattaa tttttactac
     2041 agtatcttgg ataaatgtag ttttcgtatt gtttacgact ttatcaagtg gatacattag
     2101 tttttctggc tcaattgttc cagctgctgc ctcgtgtaac caagtcgttt cgtggtgata
     2161 gtcattctta ttcactagaa cgatttcggc ttccaagttt ctttgttgta acttgcgtaa
     2221 agtttttagt cccccgtatc ctgctccgag aatgacaatt tttggtttac tcatctgtta
     2281 tcacatctac tttcccttat atttttcttc acaaaaaaaa ttgcattaag aatttcttac
     2341 tgcacctatg tagattgcgc taaaaatcta ctgcaaacaa tgaataaagt gaaaatggta
     2401 agtaccaata tattccctat ttcacagctt acaaactata tcatagactt tttcacattc
     2461 attttcaaga aagcgaactc aagggtttaa gcttctttgt agcatggttc gagtggtata
     2521 cgattttttt cacaataaag ctttgagatg gcttgatttt cgtaaatatc ttttatttga
     2581 tggataattg gtctagttca ttattatact atttttattg cagcaatccc gtaaacattc
     2641 ttttttcata atctatgcta aaatatgctt attgcaactt tagcgatttc atagggaaat
     2701 tacgaactag ggggtgatgt attttggatg aaaaaacaaa aatttatgat atcacgatca
     2761 ttggtggtgg accggttggg ctatttgctg cgttttatgc cggaatgcgc aatgcgagtg
     2821 tgaaaataat agaaagttta ccgcaattag gtggacaact ttccacgctt tatcccgaga
     2881 aatatattta tgatattccg ggctatcctg ctgtacgcgc acaggaactt gttaataact
     2941 tgattcaaca aatgaaacca tttgatccaa ccattgcgct agaggaagcg gttcaaagcg
     3001 tagaaaaaca agttgatggc acatttgaaa tcatcacgaa gaaagataca cattacagta
     3061 aagctgttat tattaccgct ggaaatggcg catttgaacc aagacgtttg gatcttccag
     3121 aagcagagca atacgaaggg aaaaacattc attatttcat caatgattta agtcgctttt
     3181 cggggcgtcg cgttgccgtt tgtggtggtg gggattccgc agtggactgg gcactcatgc
     3241 ttgaaaaagt tgccagttct gtcgcgatcg ttcatcgtcg taatgctttt cgtgcgcacg
     3301 aacatagcgt gaacaattta gaaaaatctt ccattgccat caaaacacca tttatcccaa
     3361 ctgaagtact cggtaacggc gataaattaa cgcatattac tttgcaagaa gtcaaaggtg
     3421 atacaaggga aacactggag attgacgatt tcatcattaa ctatggtttc gtttcttcgc
     3481 ttggtccaat taaaaattgg ggcctagagc tagaacgcaa ttcgattgtc gttaattcaa
     3541 aaatggaaac gagtatccca ggaatttatt gtgcaggtga tatttgcacg tatgacggta
     3601 aagtaaaact aatcgcgacc ggattcggtg aagctccaac agctgttaat aacgcgatga
     3661 atttcattga tccaaaaaca cgcgtgcaac caatgcactc cacatcttta ttcgaataac
     3721 aaccgaaacc acgaggcgac ttgtggtttt attttttact caccgggaaa agttctttgt
     3781 agatattttt taggaggaga ttagcaatga atgtactcgt aattggcgca aatggcaaaa
     3841 tcggccgtct tttagtagaa aaacttgcca tggaaaaagg ctttttcgtc cgagcaatgg
     3901 ttcgaaaagc cgaacaagta agcgaacttg aaaaacttgg cgctaagccg attatcgccg
     3961 atttaaaaaa agatttccac tatgcctatg atgaaattga agctgttatt ttcacagcag
     4021 gatccggtgg tcatacgccc gcttccgaaa ctatcaacat tgaccaaaac ggcgccatca
     4081 aagccatcga aactgctaaa gaaaaaggtg tacgtcggtt catcattgtt agctcttatg
     4141 gcgccgacaa tccagaaaac ggtcccgaat ccctcatcca ttatttaaaa gccaaacaag
     4201 cagccgatga agaactaaaa agaagcggtc tcgactacac catcgtccgc ccagttggcc
     4261 tttcagatga tccagctact ggcaaaatcg ctgaagtttc cgaaaaacct acaacgacta
     4321 tcccgcgcgc tgatgttgca gattttatta gtgaagcttt atccgaaaaa tctagtttct
     4381 ataaaaccta taccatcgaa agtggcgaca cacccattaa acattttttt gattaataaa
     4441 aagcgatgag ccaaattacg cgctcatcgc ttttttctat attaaaacgg attctcttcc
     4501 aaaaatgtat atatattcgc aaccaattct tctgctgttt ctccgcggac cacttccccg
     4561 tccactaaag caaacaaact cgtcgcgcat aaatcacaat atgtcagaca atcatattca
     4621 atcacgtcta aactatcatc cgcatctaat ttcgcaaaag ctgcatctgc cccgctcgcc
     4681 aaattattca cgcaaaattc cacaatcgga ttcatttcca cttgcctcct agactgttac
     4741 atcgttgcca agtaaccacg gtcggtcatt acttgataaa tatctttcaa ccgaggattg
     4801 ccttccgcga taatttcacc atcaaccaca atgactgggt acatataatc ttcctcgaca
     4861 attttattcg ccatatccgc taaagccttc tcattcggcg gattaaaaat atccacatac
     4921 tccaccacaa acggctgccc tgaaaacttc cgaccaattg cagctcgaag ccattcctct
     4981 gtttccttcg aggatggcgc tccgacacaa ctcgcacaaa tagtcgttga accataaaca
     5041 tataatttcg cttcatttac catcacgctt cacctcacta ttattgtaca aaaacccacc
     5101 aaaaaaagcg actaagctgt ttcacgaagc ataactatta aattttatga atttttataa
     5161 agatatgaat tgacacgaat ttacagatat attataatat ttccaataca ttgctaatct
     5221 ttaaagcagt agtgtattaa tatgataaat tatctctagg ttgtacccgt gatttcacgg
     5281 tcaacatata agtaacactc cctttaacaa ttgggcgcgc aacccaattg tctttcaacc
     5341 ttaccagttg aaagagcacg ttcctttctg agccttagga acgtgttttt gtttggcccg
     5401 ttcgaagcaa agcgagttac gggccaaata tgcatgcgag tgaaacgagc atgtaatcct
     5461 tcccgtaaaa tgcgccctcc acacaacctt tcacccagca tcaaaatcct tccaccatct
     5521 atcgaaaacc cacactccca ttcacccgtt cgaagcaaag cgagttacgg gccaaatatg
     5581 catgcgagtg aaatgagcat gtaatccttc ccgtaaaatg cgccctccac acaacctttc
     5641 acccagcatc aaaatccttc caccatctat cgaaaaccca cactcccatt cacccgttcg
     5701 aagcaaaacg aattacggcc caaatatgca tgcgagcatg taattcttcc cgaaaaatat
     5761 atcctccaaa caaatacttt tcaatacttt cagaataata taaaatcatt gcccaattta
     5821 tatgttatat atatccatct acatcctttt aacgtctgtc tattgaagaa aaacctagct
     5881 ctatcaacac attcccatcg taaaacagta ctaaaaacaa ttatgtcgaa accttgaacc
     5941 tcactctatt ttaagtaaat cccatcaaaa aaaccatgct taataaagat tcctcatgat
     6001 attataactt tgcttagaaa tgtattcggt tggaaatact actttaatca attaattttg
     6061 ttgttgaaat agttaatttt aacgaataaa taattacgaa tacatttcaa aaaaacaagg
     6121 aggaaattaa acatatgcaa aaagcaatca aaataatgtt agttttattt ttaatgacaa
     6181 ccgtattttt accttttagt aatgttcggg cagcatcaac tgatgtagta aatataccag
     6241 atccgtattt aaacgaaggt cttaagagca tcgtaggaaa tccattctta accgaattga
     6301 ctgaagcgaa tcttgaaacc attagtgtcg ctgatatctc ttatatgaat ggagtacctg
     6361 gttatgctgt cactggttta attagtgatt taaccggact cgaaaaagca gttaatatga
     6421 ccaaattata tttttcaaac caaacagaaa ttaaaaattt aaatcaaata aaagatttac
     6481 ctaatctgaa gaaaattgtt ggtgttacta caggtttaaa tgatattaaa gcccttggtg
     6541 aaatgcccgc actcgaagaa ct
//
LOCUS       DASEAA010000144         6557 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.144, whole genome shotgun sequence.
ACCESSION   DASEAA010000144 DASEAA010000000
VERSION     DASEAA010000144.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6557)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6557)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6557
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.144"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..677)
                     /gene="gpmA"
                     /locus_tag="U0342_002305"
     CDS             complement(<1..677)
                     /gene="gpmA"
                     /locus_tag="U0342_002305"
                     /EC_number="5.4.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2,3-diphosphoglycerate-dependent
                     phosphoglycerate mutase"
                     /protein_id="HEM2423645.1"
                     /translation="MKLVLIRHGQSEWNKLNLFTGWHDVDLSQEGVVEAMTAGKRIKE
                     AGLEFDVAFTSVLTRAIKTLNYVLEESDQMWVPVHKSWRLNERHYGALQGLNKQETAE
                     KYGADQVQKWRRSYDTLPPLLEENDERQAKNDRRYQLLDTHAIPAGENLKVTLERVIP
                     YWMDTIAPEIKEGRRVVIAAHGNSLRALVKFLEGIGDDEIMDLEIPTGVPLVYELNDD
                     LKPVNKY"
     gene            complement(768..3368)
                     /gene="clpB"
                     /locus_tag="U0342_002306"
     CDS             complement(768..3368)
                     /gene="clpB"
                     /locus_tag="U0342_002306"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent chaperone ClpB"
                     /protein_id="HEM2423646.1"
                     /translation="MDLQKFTQQVQQTIADAQNLAIASEHQEIDVAHVFKVLLTESDF
                     AKRVYDVAEVDIDALQKTVEDALTKIPVVSGSGVNYGQAMSQALFQLMRDAEKEQKQL
                     DDDFVSTEHLILAVMDQKSNPITMNLKKQHKSKKQIQEAILKIRGGKKVTSQNAEENY
                     EALTKYGRDLVAEVRSGKLDPVIGRDAEIRNVIRILSRKTKNNPVLIGEPGVGKTAIV
                     EGLAQRIVRKDVPEGLKDKTIISLDIGSLIAGAKYRGEFEERLKAVLQEVKQSDGQIL
                     LFIDEIHTIVGAGKTDGAMDAGNMLKPMLARGELHCIGATTLDEYRQYIEKDAALERR
                     FQKVLVPEPTVEDTVSILRGLKERFEIHHGVNIHDNALVAAASLSNRYITDRFLPDKA
                     IDLVDEACATIRVEIDSMPSELDEVTRKVMQLEIEEAALKEEKDPASERRLEILQREL
                     ADYKEEANQMKSKWESEKNEISKIREVREQIDHLRHELEEAENNYDLNKAAELRHGKI
                     PAVEKELLELEAENREKTAQEDRILQEEVTENEIAEIVGRWTGIPVTKLVEGEREKLL
                     KLADELHQKVIGQDDAVQLVSDAVLRARAGIKDPKRPIGSFIFLGPTGVGKTELAKAL
                     AFNMFDSEDHMIRIDMSEYMEKHSVSRLVGAPPGYVGYEEGGQLTEAVRRNPYSIVLL
                     DEIEKAHPDVFNILLQVLDDGRITDSQGRLIDFKNTVIIMTSNIGSNLLLERTEEGEI
                     SPELESDVMQILQSEFKPEFLNRVDDIILFKPLTLADIKGIVEKLVEELQIRLADQEI
                     TITISDNAKAFIAEEAYDPVYGARPLKRYIVRHVETPLAREIVSGKIMPHSSVEIDLA
                     DKEFTFKVTE"
     gene            complement(3516..4193)
                     /locus_tag="U0342_002307"
     CDS             complement(3516..4193)
                     /locus_tag="U0342_002307"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Bax inhibitor-1/YccA family protein"
                     /protein_id="HEM2423647.1"
                     /translation="MNEINHTSERANTEKRTEKQIIMQKILNWFVFSLLLASIGAAIG
                     SKLSPELYLPLVVLEVALLITAMVVRRSKTINKVVGYPVVLAFAFVTGLTLGPTLTYY
                     FGAGQGAAVLMAFVTATVTFTTLAFIGAKMKKDLSFLSSALFAAIIILVIFSFVGVFL
                     PLGSMLSTIISAGGTIIFSLYILYDFNQIMKRDVELADVPMLALNLYLDFLNLFMFLL
                     RLFTGRD"
     gene            complement(4305..5075)
                     /locus_tag="U0342_002308"
     CDS             complement(4305..5075)
                     /locus_tag="U0342_002308"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2423648.1"
                     /translation="MKPRGICFFDMDGTLLNSESKVLDTSLQALDKLRENNVIPVIAT
                     GRTLIEISHQMKITGIESAVMMNGQMAIFEGEKVYEDVIDADLLARLTEEAKSQNVEV
                     CYYNDKRIGATASTPVVKAHYDFLGEPMPEVRPNMYKEENINMALLLLETGDDYFPER
                     FPELQFVRNTPFSNDVLRKGGSKAVGISKLLEVMGYQDVPTYAFGDGMNDLEMFGAVD
                     YAIAMENAVPLLKEKATFVTKDNNSDGIMLGLKQFDLI"
     gene            complement(5139..5924)
                     /locus_tag="U0342_002309"
     CDS             complement(5139..5924)
                     /locus_tag="U0342_002309"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423649.1"
                     /translation="MIRKLTVSDNEEVMALLKPEATLNLFIIGDIENFGYESDVQDLW
                     GEFDSEDKLHALLLRFDTFFLPYSKDANFDAKAFSEIIAKHDTYEVSGISRVTKELEP
                     FLPELAEKRQDTYFCECEHVNRISVNQDVIVRTAVAEDVAPIIKMRKHIKEFGSRDEN
                     EELIIRQIEKGVKRIYYIEQDQEVVAVAETSAENSFSAMITGVATSDGYRQRGFASTL
                     LKKLCCDVLAEGKKPCLFYDNPVAGEIYHRLGFEHTGDFVMYK"
     gene            complement(6045..6389)
                     /locus_tag="U0342_002310"
     CDS             complement(6045..6389)
                     /locus_tag="U0342_002310"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465734.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423650.1"
                     /translation="MKNKAEKQRIATNLSLYMKINGYTHRTFALAVGISQNTLKALMI
                     GKMRNENKFQKYISQITESLALEEKFFEQPKEAITAAPITFQDTNKMHLGDEKFNAIS
                     LMLKIGEIHYES"
BASE COUNT         1826 a         1317 c         1075 g         2339 t
ORIGIN      
        1 taatatttat ttactggttt taaatcatcg tttaattcat atactagtgg cacgcctgtc
       61 ggaatttcta aatccattat ttcatcatcg ccaatacctt ctagaaattt cactaatgct
      121 cgtaaactgt taccatgcgc cgcgatgact actcgccgtc cttctttaat ttctggagca
      181 atcgtgtcca tccaataagg aataacgcgt tctaatgtta ctttcaagtt ttcacctgcc
      241 ggaatagcgt gtgtatcaag gagttgataa cggcgatcat ttttggcttg tctttcgtcg
      301 ttttcttcta gtaatggtgg aagagtatca tagcttctgc gccatttttg tacttggtca
      361 gcaccatatt tttcagcagt ctcttgtttg ttaagacctt gaagtgcgcc ataatgccgt
      421 tcgttcaagc gccaagattt atgaactggt acccacattt ggtcagattc ttctaacaca
      481 taattaagtg ttttaatagc tcgcgttaaa acagaagtga aggcaacatc gaattctaag
      541 cccgcttctt taattctttt tcctgcagtc attgcttcta caacgccttc ttgtgacaag
      601 tcaacatcat gccaacctgt aaataaattc aatttgttcc attcactttg accatgacga
      661 attaatacta atttcatctt cctcatcctt ccattttcgt ctattatcta aacgactaat
      721 ccaaccaaag ttttcccttt caagcgaggt gtcaaacctt ttctatgtta ttctgtgact
      781 ttaaaagtaa attctttatc tgctaaatca atttctacag atgaatgtgg catgatttta
      841 cctgatacaa tttctctagc aagtggcgtt tcaacatgac gcacaatata gcgtttaagt
      901 ggtcgtgcgc catataccgg atcatatgct tcttccgcaa taaatgcttt tgcattatcg
      961 gaaatagtaa tcgtaatttc ttggtcggct aaacggattt gaagttcttc tactaatttc
     1021 tccacaatgc ctttaatatc agctagtgtt agtggtttaa atagaataat atcatctacg
     1081 cggtttaaga attccggttt gaattcactt tgtaaaattt gcattacatc cgattctaat
     1141 tccggtgaaa tttcgccttc ttcggttctt tcaagtaata aattagagcc aatatttgac
     1201 gtcataataa ttactgtatt tttaaaatca attaatcgac cttgtgaatc tgtgatacgt
     1261 ccatcatcaa gtacttgtaa tagtatgtta aatacatctg gatgagcttt ttctatttca
     1321 tcaagtagga cgattgaata aggatttcgt cttacagctt cagtaagttg accgccttct
     1381 tcatagccaa catagcctgg aggagctccg acaagtcttg atacggaatg tttctccatg
     1441 tattcagaca tatcaattcg aatcatatga tcttctgaat caaacatatt aaatgcgagt
     1501 gctttggcaa gttctgtttt accaacacct gttggcccta ggaaaatgaa tgagccaatt
     1561 gggcgtttcg gatctttaat accagcgcgt gcacgaagta cagcatcact aactaattga
     1621 acagcgtcat cttgaccaat tactttttga tgaagttcat ctgctaattt aagcagtttt
     1681 tcgcgttctc cttctactaa cttggtcact ggaattcctg tccaacgtcc gacgatttct
     1741 gcaatttcat tttctgttac ttcttcttgt aaaatccggt cttcttgtgc agttttttcg
     1801 cgattttctg cttctaactc tagtaattct ttttccacag ccgggatttt accgtgtcgt
     1861 aattctgctg ctttatttaa atcataatta ttttctgctt cttctaattc atgacgcaaa
     1921 tgatcgattt gttctcggac ctcacgaatt ttactaattt cgtttttctc agattcccat
     1981 ttcgatttca tttgattggc ttcttctttg tagtcagcta gttcgcgttg caatatttct
     2041 aaacggcgtt cactcgctgg atctttttct tcttttaaag ccgcttcctc aatttctaat
     2101 tgcattactt ttctcgttac ttcgtcgagt tcacttggca tcgagtcaat ttcgacacga
     2161 atagttgcgc atgcttcatc tactaagtcg attgctttat ctggtaagaa gcggtccgta
     2221 atataacgat tagaaagact cgctgctgca actaaagcat tatcatgaat atttacccca
     2281 tgatgaattt caaagcgttc ttttaaccca cgtaaaatgg atactgtatc ttccactgtt
     2341 ggttctggga caagtacttt ttggaaacgt ctttcgagtg cggcatcttt ttcaatatat
     2401 tggcggtatt catctaacgt agttgcgccg atacagtgta gttcaccgcg ggcaagcatc
     2461 ggttttaaca tatttccggc gtccattgcg ccatctgttt tacctgcgcc gacaatcgta
     2521 tgaatttcat caataaatag taaaatttga ccgtcacttt gtttcacttc ttgaagtact
     2581 gctttcaaac gttcttcaaa ttcaccgcga tatttagctc cagcaataag ggaaccgata
     2641 tcaagcgaga taatcgtttt atctttcagc ccttctggaa cgtcttttcg aacgattcgt
     2701 tgtgctaaac cttcgacaat ggctgtttta ccaacgcctg gttcacctat cagaactgga
     2761 ttattttttg tttttctaga taaaattcgg ataacgttac gaatttctgc atcgcgtccg
     2821 attactggat cgagtttacc acttctaact tccgcgacta aatcacgtcc atattttgtt
     2881 aaggcttcat agttttcttc tgcattttga gaagtcactt ttttccctcc tctgattttt
     2941 aaaatagctt cttgaatttg ttttttagat ttatgttgtt tttttagatt cattgttatt
     3001 ggatttgatt tttgatccat gacagctaag attagatgtt ctgttgatac aaaatcatcg
     3061 tctaattgtt tttgttcttt ttcggcatcc cgcatcaact gaaaaagtgc ttggctcatt
     3121 gcttgaccat agtttacacc gcttccagag accacaggaa tttttgttaa agcatcttct
     3181 actgtttttt gaagtgcatc tatatctact tctgctacat catatacacg tttggcaaaa
     3241 tcactctctg ttaataacac tttaaaaaca tgagcgacgt cgatttcttg atgttcggat
     3301 gcaattgcta aattttgagc gtccgcaatt gtttgctgga cttgttgcgt aaatttttgt
     3361 aaatccattc attcgtcctc cttataaaag ataagtctga ccttttttga ccttaacttt
     3421 attatagttt tttatcttgc ttttgtctaa caaaaaccat cttttttata gaaaaagatc
     3481 tgccaatttt taggttggca gatcttctga atttcttaat cacgacctgt aaataggcgg
     3541 agtaagaaca tgaataagtt aaggaaatca aggtataaat tcagcgcaag cattggtaca
     3601 tctgctaatt ccacatcgcg cttcatgatt tggttgaagt catacaaaat atatagtgag
     3661 aaaataatcg ttccgcctgc tgaaataatt gttgatagca tagaacctaa tggtaaaaag
     3721 actcctacaa agctaaatat aacgagaata ataatcgcag cgaataaagc actgcttaag
     3781 aaagataagt cttttttcat ttttgcgcca ataaaagcta gcgttgtgaa agtaacggtt
     3841 gctgtaacaa atgccattag aacggcggca ccttgccctg caccaaaata atatgtcaaa
     3901 gttggtccaa gcgttaagcc tgtgacaaac gcaaatgcta gtactactgg gtatcctacc
     3961 actttattaa tagttttact tcgacgcact accatcgctg tgataagtaa cgcgacttct
     4021 aagacgacaa gaggcaaata aagttctgga cttaatttac tcccaatcgc agcaccgata
     4081 gatgcaagta gcaaagaaaa tacaaaccaa ttaagtattt tttgcataat aatttgtttc
     4141 tcagttctct tttctgtgtt tgctcgctcg gatgtgtgat tgatttcgtt cattaacatt
     4201 tctcctcttc caattgatta gttttattat atcaaaagaa ttattacaat tctatcggtc
     4261 ttgcgttgga atttcacaaa aaaagaagcg cacgaggcac ttctttaaat taaatcaaat
     4321 tgtttcaagc caagcataat gccgtcacta ttgttatctt tcgttacaaa agtagctttt
     4381 tcttttaata atggtacggc attttccatt gcaatggcat aatccactgc gccaaacatt
     4441 tctaaatcgt tcattccatc accaaacgca taagttggaa cgtcttgata gcccattact
     4501 tcaagtagct tcgagatacc aactgcttta gatccgcctt ttcttaagac gtcattacta
     4561 aatggtgtgt tgcgaacaaa ttgtaattct ggaaagcgtt ctggaaaata atcatcacca
     4621 gtttcgagta aaagaagagc catattgatg ttttcttctt tatacatatt aggccttact
     4681 tctggcattg gctcgcctaa aaaatcatag tgtgctttta caactggtgt acttgcggtt
     4741 gcgccaattc ttttatcatt ataatagcaa acctctacat tttgtgattt agcttcttcc
     4801 gtcaaacgag caagtaaatc agcatcaatc acatcttcgt acactttttc tccttcaaag
     4861 atagccattt gtccgttcat cattactgcg gattcaatgc cggtaatttt catttgatga
     4921 ctgatttcta tgagcgtccg accagtagca ataacaggaa taacattatt ttctcgaagt
     4981 ttatcaagtg cttgaagcga ggtatcaagt actttggatt cactatttaa cagtgttcca
     5041 tccatatcaa aaaaacaaat tccacgtggt ttcacattat tcatccttta ctaacataat
     5101 atatccatca taccaatctt acggatacaa agtaaaggct atttgtacat aacaaaatct
     5161 cctgtatgct caaaaccaag acggtggtat atctcaccag caactggatt atcgtaaaat
     5221 aaacatggtt tctttccttc tgctaataca tcgcaacata atttttttag aagtgtactt
     5281 gcaaaaccac gctgtctata tccatcactt gtcgctacac ctgtaatcat tgctgaaaag
     5341 gaattttctg cagatgtttc tgctacagca acaacttctt ggtcttgttc aatataataa
     5401 attcgtttca cgcctttttc aatttggcga ataattaatt cttcattttc atcgcgtgaa
     5461 ccaaattctt taatgtgttt gcgcatttta ataattggag ctacgtcttc tgccactgcc
     5521 gttctgacaa taacgtcttg atttacagaa atacgattta catgttcgca ttcgcaaaaa
     5581 taagtgtctt gtcttttttc ggcaagttct ggtaaaaatg gttccaattc ctttgtgaca
     5641 cgagaaatac cgctaacttc gtatgtatca tgcttagcaa taatttctga gaaagctttt
     5701 gcatcaaaat tagcatcttt tgaatacggt aagaaaaacg tatcgaatcg aagtaacaat
     5761 gcatgtaatt tgtcttctga atcgaattca ccccaaagat cttgcacatc actctcgtaa
     5821 ccaaaatttt cgatatcccc aataataaat aagttgaggg ttgcttcggg ttttaaaagt
     5881 gccattactt cttcattatc agatacagtt agttttctaa tcatgtgcca cactcctatt
     5941 ttgaaaattg tcttcatttt acgtgagtta ggtaggttcg tcaagccctg aatcttacta
     6001 ttttgcgcca tataaaaaag ctcgggacaa ttagtcccaa gcttttatga ttcgtaatga
     6061 atttcgccaa ttttcaacat taagctgata gcgttgaatt tttcatctcc aagatgcatt
     6121 ttgtttgtat cttgaaaagt gataggtgct gctgtaatcg cttctttcgg ttgttcaaag
     6181 aacttttctt caagtgccaa actttctgta atttgcgata tgtatttttg gaatttattt
     6241 tcgtttctca ttttcccaat catcaatgct tttaaagtgt tttgagaaat cccgactgca
     6301 agcgcgaatg ttctatgagt gtatccattt attttcatat aaagtgacaa attagtggca
     6361 attctttgtt tttctgcctt gtttttcatt tgggtgaacc tcctgtcttt ctatagttat
     6421 cattatgccc ggtgaagatg agaatttgat taaaacttca tagtatttag ctaaaaatat
     6481 tgaaaacgtt ttctttgttt taaaaaaata tgccggaata acgaatatcc cggcaagtac
     6541 tttatttaat tgctata
//
LOCUS       DASEAA010000145         6501 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.145, whole genome shotgun sequence.
ACCESSION   DASEAA010000145 DASEAA010000000
VERSION     DASEAA010000145.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6501)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6501)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6501
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.145"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..464
                     /locus_tag="U0342_002311"
     CDS             <1..464
                     /locus_tag="U0342_002311"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM2423651.1"
                     /translation="DQNVVVDAYGISPDEAEKHVTSLDHLISVLNGTVSPRLLVVGGA
                     ASLQIDEDGNTLLESKGLREAPYYPTARAQAKQLEHLKSHQAEFSWTYISPSAMFEPG
                     ERTGDYQIGKDHLLFGSDGNSFISMEDYAIAVLDEIERPNHLNERFTVAGK"
     gene            579..1280
                     /locus_tag="U0342_002312"
     CDS             579..1280
                     /locus_tag="U0342_002312"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464320.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF554 domain-containing protein"
                     /protein_id="HEM2423652.1"
                     /translation="MVLLGALVNGLGILIGSVIGMKLHNIPERMKDTVMKGMGLSVIV
                     LGIQMAFKTSNSLIVILSICFGAVIGEWLNIDYHLNQLGHWIERKVGAKGKSNVSKGF
                     VTATLIFVIGAMGIIGALDSGIRGNHDVLYTKSVMDGFIALLLSTTLGWGVMLSAIPV
                     FLFEGIIALFATQINQFVPADLMALIIKELTATGGIMILAIGLNLLGLTKIRVANLVP
                     GILVVALIVTGLYYF"
     gene            complement(1315..2205)
                     /locus_tag="U0342_002313"
     CDS             complement(1315..2205)
                     /locus_tag="U0342_002313"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464319.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen hydrolase family protein"
                     /protein_id="HEM2423653.1"
                     /translation="MNTIKIALIQQKAVPNNKEANLKLAIKYIKEAHEKGADLVLFPE
                     MWSNGYAPPFEDAFNHPLATDFDNERTKWLNEAITEDSAYFLTLKELAKELKIGICAT
                     YLSKTEQKPQNTAIIIDRKGEIILDYAKVHTCDFSLEILLQSGEEFKVCEFDGIKLGG
                     MICYDREFPESARVLMLKGAEIILVPNACDMNPARLNQLNSRAFENMVGVAMANYPGE
                     KWGRSTAFSPIVFDENGDYRDNTIIETDDVSEGIFIAEFNLDEIRTYRENETWGNAYR
                     KPQTYTDLISLDVEAPFKRN"
     gene            complement(2311..2961)
                     /locus_tag="U0342_002314"
     CDS             complement(2311..2961)
                     /locus_tag="U0342_002314"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464318.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5105 domain-containing protein"
                     /protein_id="HEM2423654.1"
                     /translation="MKKGLFSMVLVLAMVLVLSACGASRVEPKKAGEITVNAVVYNKD
                     TDKVKDVYGEDGSKFEKEFETSFKESFISTFTASFSSDVNLDKQVDEFYDALRKQVNE
                     KTSYTTKVTNDDKESPEIQFAVKGLDMKGVQTELVEELTKAATADPSLATDDQKMAEK
                     TMEIYTKAVQNADAVSEAKTVTLKLKADPDDDSLWKMENDMAFMQELTTAFFMGGM"
     gene            3085..3561
                     /gene="ybaK"
                     /locus_tag="U0342_002315"
     CDS             3085..3561
                     /gene="ybaK"
                     /locus_tag="U0342_002315"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464317.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cys-tRNA(Pro) deacylase"
                     /protein_id="HEM2423655.1"
                     /translation="MNKKTNACRILDKQKVNYELREYAWSEDSLDALHVAAETGNNPA
                     QIFKTLVLTGDKTGNIVACIPADKTLHLKHLAKISGNKKCELIAVDTLEKLTGYIRGG
                     CSPIGMKKLFPTFIDNSAESLDTILISAGKRGLQIELAPTDLKKVVRAEFAMIKEE"
     gene            3588..4436
                     /locus_tag="U0342_002316"
     CDS             3588..4436
                     /locus_tag="U0342_002316"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464316.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PhzF family phenazine biosynthesis protein"
                     /protein_id="HEM2423656.1"
                     /translation="MNLSVYVASAFSKNNKGGNKAGVVLNEPTLATAQKMAIAKQLGY
                     AETAFLTESNCADYKLEYFTPKEEVDLCGHATIGTFAILMHLNKIHKSQYTIETNSGV
                     LTITIKDGTIFMEQNQPTFYDTIPPNKLTGCFNLNLLNTNYPIQIVSTGLKDILIPIK
                     SEADLYALEPNFEEVKKVSKHYEVVGMHLYTFNADQIICRNFAPLYDINEEAATGTSN
                     GALACYLYKNHYLRKENYVFEQGYSLHSPSEIFVNLVISNKDEIEKVYVGGKGYYCEM
                     QDLSME"
     gene            complement(4553..>6501)
                     /locus_tag="U0342_002317"
     CDS             complement(4553..>6501)
                     /locus_tag="U0342_002317"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423657.1"
                     /translation="PDKISDYKNLNTLLALNGTISEIPTSITKLTKLTRINVDNNNFQ
                     EFPMILLQMPSLSSIEINRNKIKEIPSEITTLSPHLGSLDVRYNELITLPDNIFTTEW
                     ESKLSLLTTGNQLVSDIPADWLDNFNQADNMLEFYNNPPNDYHQKQDQLTYSGARIEV
                     PLNTDLKTLTPDKTKLGLKSGRTLFEQHEFMYYDDGTSNNILTNGVATATGNGYITIK
                     STLSTNSNPFAKVRVPITVTPPVKGGDVTVQYKDTTGVVLADSITLSGNVGENYTTTA
                     KTIDGYSLTTTPTNANGTFSTNPQTVTYTYKKDPIAQPVTVNYIDTDGKTIAPTETLS
                     GNVGENYTTTAKTIDGYSLTTTPANANGTFSTNPQTVTYTYTKDPIAQPVTVNYIDTD
                     GKTIAPSETLTGNISENYTTTAKTIDGYSLTTTPANAKGTFSTEPQIINYIYAKNAET
                     AQPITVNYRNSTGQKIAKSEVLTGNIGESYSTQPKTIAGYTLTTIPPNAKGTFTTNAQ
                     TVTYMYTPIAISALPVTVNYLDENGKEIADSVVLNGRVGEAYNTLAKEIDGYTLIKTP
                     TNANGVFSAEAQSIDYIYRKNKPVVIVNPPIKNPIIKIDSSTNVIKEETSVLPKTGDS
                     NPYNDFLAGILLLSSAMFLWKNHK"
BASE COUNT         1890 a         1118 c         1260 g         2233 t
ORIGIN      
        1 cagaccaaaa tgtcgttgtt gatgcttatg gcatcagtcc agacgaagca gaaaaacatg
       61 tcacttccct tgatcactta atttctgttt taaatggaac tgtgtctccg cgcttacttg
      121 tcgttggcgg agcagctagt ctgcaaattg atgaagacgg aaacacgctt ttagagtcca
      181 agggcctacg ggaagcgcct tactatccaa ctgcacgtgc gcaagcgaaa caattagagc
      241 atttaaaatc acatcaagca gaattcagtt ggacttacat tagcccttct gccatgtttg
      301 agcccggcga acgcactgga gactatcaaa taggaaaaga tcatctctta tttggtagcg
      361 atggtaatag ttttatcagt atggaagact atgcaattgc tgttttagat gaaattgaac
      421 gacctaatca cttaaatgaa cgctttacag tagccggaaa atagacttaa agtcgaagga
      481 tcactttgat ccttcgactt ttttgtacaa aataaaactc ccaattggcg aaaacttcct
      541 gtatactatt gctatatgta aaaaaaggga ggaagaaaat ggttctactt ggtgcgctag
      601 tgaatgggct tgggattttg attggctctg ttattggcat gaaattacat aatatccctg
      661 aacgtatgaa agacacggtc atgaaaggga tgggtttatc cgttatcgtc cttggcattc
      721 aaatggcatt taaaacgagc aactcgctta ttgtcatttt aagtatttgt tttggagccg
      781 ttattgggga atggcttaat atagattatc acctgaatca gctcgggcac tggattgaac
      841 gtaaagtcgg tgccaaggga aaaagtaatg tttcaaaagg ctttgtgaca gctacactta
      901 tttttgtgat tggtgcgatg gggattattg gtgcgcttga tagcggcatt cgcggcaatc
      961 atgatgtact ttatacgaaa tcggtgatgg atggatttat cgccctactt cttagtacga
     1021 cacttggttg gggcgttatg ctttctgcga ttccagtgtt tctctttgaa ggcattatcg
     1081 cgttattcgc aacccagatt aatcaattcg ttccggcaga cctgatggca ctaattataa
     1141 aggaattaac ggctacaggc gggattatga ttttggcaat tggtctaaac ttgcttggtt
     1201 taaccaagat tcgggtcgcg aaccttgttc cggggatttt agtcgttgcg ctgattgtta
     1261 ccgggcttta ttatttttaa aagaaaaaac agagaatcgc tcatctctgt ttttttaatt
     1321 tcgtttaaat ggcgcttcta catctaaact tattaaatct gtatatgttt gcggttttcg
     1381 gtaggcattt ccccacgttt cattttcccg gtaagttcga atctcgtcta aattaaattc
     1441 agcaataaaa ataccttctg aaacgtcgtc tgtttcaata atcgtattat cgcggtaatc
     1501 cccattttca tcaaaaacaa tcggggaaaa agcagtggat ctgccccatt tttcgccagg
     1561 atagtttgcc atcgctacgc caaccatgtt ttcaaaagca cgagaattta gttgattaag
     1621 tctggctgga ttcatatcac aagcatttgg aacgaggata atttctgccc cttttaacat
     1681 gagaactctg gcactttctg gaaactcgcg gtcatagcaa atcatgcccc ccagcttaat
     1741 accatcaaac tcacaaactt taaattcctc gccactttgt agtaatattt ctaaagaaaa
     1801 atcacacgta tggactttgg catagtctaa aattatttct ccttttcggt caataataat
     1861 agcagtattt tgtggttttt gttccgtttt agacaaatac gtagcgcaaa tgccaatctt
     1921 caactctttg gcaagttctt tcagtgtcaa aaaatacgca ctgtcttctg tgatagcttc
     1981 atttaaccac ttggttcttt cattatcaaa atcagtagct agtggatgat taaaagcatc
     2041 ttcaaaaggt ggcgcataac catttgacca catctcaggg aaaagtacta aatctgctcc
     2101 tttttcatgc gcttctttta tatatttaat ggctaatttc aaattggctt ccttattatt
     2161 tggtactgct ttttgttgga ttaatgcgat ttttatagta ttcatatagc gcctcccatt
     2221 agtaaatctt tatgttatta taacatttat tcttggaaac aaaaaaacac caacaacccg
     2281 aaagttattg gtgttttgcc atataaaagc ttacatgccg cccataaaga atgctgttgt
     2341 taattcttgc atgaatgcca tgtcattttc cattttccac aaagaatcgt catctggatc
     2401 tgcttttaat ttaagtgtaa ctgttttagc ttctgatact gcatctgcgt tttgaacagc
     2461 tttcgtatag atttccattg ttttttcagc cattttttga tcatctgttg caagagatgg
     2521 atcagctgtt gctgcttttg ttaattcttc aactaattct gtttgaacgc ctttcatatc
     2581 aagcccttta acagcgaatt gaatttctgg actttctttg tcgtcatttg ttactttagt
     2641 agtatacgaa gttttttcgt ttacttgttt gcgaagtgca tcataaaact catccacttg
     2701 tttgtctaag tttacatcac tagaaaagct tgctgtaaat gtactgataa agctttcttt
     2761 aaaactagtt tcaaattctt tttcgaattt agaaccatct tcaccatata catcttttac
     2821 tttatccgta tctttgttgt agactacggc attaactgtg atttctcctg ctttttttgg
     2881 ttctaccctt gatgcgccac atgcacttaa tacaagtacc attgctagca caagaaccat
     2941 actaaataac ccttttttca ttagtaaatc tccctttctt atttgaattc cacttcattg
     3001 tacagaatga aaagggaaaa gccaactatt tcacaaaaag tgtcataaat tatacatatt
     3061 tctgaattaa ttgaggtgaa agacttgaat aaaaagacaa atgcgtgtcg gattttagat
     3121 aaacagaagg taaactatga attacgtgag tatgcctgga gcgaggattc ccttgatgcg
     3181 cttcatgttg cggcagaaac agggaataat cccgcacaga tttttaaaac attagtcctg
     3241 actggtgaca aaacaggaaa tattgtagcg tgcattcctg ccgataagac tttgcattta
     3301 aaacatttgg caaagattag cggtaataaa aaatgtgaat tgattgcggt agatacgtta
     3361 gagaagctga ctggctatat tcgcggtgga tgttcgccga ttggaatgaa gaaattattt
     3421 ccaacgttta ttgataacag cgctgaatcg cttgatacta tactgatttc ggctggaaaa
     3481 agaggattac aaatcgaact agcccctact gatttgaaaa aagtagtacg tgcggagttt
     3541 gcgatgatta aggaagaata aagtttttac aagggagttt tatttttatg aatttatctg
     3601 tttatgttgc aagtgcattt agtaagaata ataaaggtgg aaataaggcg ggtgtcgtat
     3661 tgaacgaacc aacactcgcc actgctcaaa aaatggccat tgcaaaacaa ttaggctatg
     3721 cggaaactgc tttcctaact gaatctaact gtgctgatta taaattagaa tattttactc
     3781 cgaaagaaga agtcgattta tgtggtcatg cgacaatcgg cacttttgcg attttgatgc
     3841 atttaaataa aattcataag agccagtata caattgaaac aaatagcggt gtactgacga
     3901 ttacgataaa agatggcact atcttcatgg aacaaaatca accaactttt tatgatacaa
     3961 ttccccccaa taaattaaca ggttgtttta acttaaattt actaaatact aactacccta
     4021 ttcaaattgt gtcaactggt ttaaaagata tattaattcc aattaaaagt gaagcagatt
     4081 tatatgccct agagccgaat tttgaagagg ttaaaaaagt cagtaagcat tatgaagtag
     4141 tcggaatgca cctgtatact tttaatgctg accaaattat ttgtcggaat ttcgcgccac
     4201 tatacgacat taatgaagaa gctgcgactg ggacctctaa tggtgctttg gcctgttatc
     4261 tttataaaaa tcactactta cgaaaagaaa attatgtatt tgaacagggc tattctttgc
     4321 actcgccttc cgaaatcttc gttaatctag tcataagtaa taaagacgaa atagagaaag
     4381 tgtatgtggg cggtaaagga tattactgtg agatgcagga tttaagcatg gagtaactca
     4441 tggtaaatat attccacttc acttcatttc attataataa aaaaactgta ggcaaagtat
     4501 ttttatactt cgcctacaat ctcagccgaa aagaaaggtg tcttttcggt ttttatttat
     4561 gatttttcca aagaaacatc gctgaagata gtagtagaat tcctgccaaa aagtcattgt
     4621 atggattgga atcgccagtt tttggtaaga cagacgtttc ttcttttatt acgttggtac
     4681 tagaatctat tttaataatc gggtttttga ttggtggatt tactattact actggtttat
     4741 ttttacggta gatataatcg attgattgtg cttccgccga aaacacacca ttagcatttg
     4801 taggagtttt tatcaacgtg tagccatcta tttctttagc tagtgtatta taagcctctc
     4861 ccacacgacc atttagaact acagagtcag caatttcttt accattttca tctaaatagt
     4921 tcactgtcac tggtaaggcg gaaatagcaa tcggcgtata catataagtt actgtttgcg
     4981 catttgttgt aaaggttcct tttgcatttg gaggtattgt tgtgagtgtg taaccagcaa
     5041 ttgttttcgg ttgagttgag taagattctc cgatattacc agttaaaacc tcacttttcg
     5101 cgattttttg acctgtagag tttctataat taacggtaat aggttgggct gtctcagcgt
     5161 ttttcgcata gatataatta attatttgag gttctgtcga aaaagtcccc ttggcattgg
     5221 caggtgtagt tgttaaagaa tagccgtcaa ttgttttagc tgttgtcgta tagttttcac
     5281 taatatttcc ggttaaggtt tcagaaggag caattgtttt tccatctgta tcgatataat
     5341 taacagtaac tggttgcgct ataggatctt ttgtgtaagt atatgtgaca gtttgtgggt
     5401 ttgttgaaaa agttccatta gcattggcag gtgtagttgt taaagaatag ccgtcaattg
     5461 ttttagcagt tgtcgtataa ttttcgccca catttccgct taatgtttca gtgggagcaa
     5521 ttgtttttcc atctgtatca atataattaa cagtaactgg ttgcgctata gggtcttttt
     5581 tataagtata tgtgacagtt tgtgggtttg ttgaaaaagt tccattagca ttggttggtg
     5641 tagttgttaa agaatagccg tcaattgttt tagctgttgt cgtataattt tcgcccacat
     5701 ttccggataa agtaatggag tctgctaaca ctactccagt tgtgtcttta tattgaacgg
     5761 taacatctcc tccttttact gggggcgtta ctgtgatagg aactcgtact tttgcaaaag
     5821 ggttggaatt ggttgataaa gtacttttga ttgttatata gccatttcct gtggcagtag
     5881 caacaccgtt agttagaatg ttattagagg tcccgtcatc ataatacata aattcatgtt
     5941 gttcaaataa cgttctgcct gattttaagc ccagttttgt tttatcagga gttaatgttt
     6001 ttagatctgt atttaatggg acttcaattc ttgctccact atacgttagc tggtcttgtt
     6061 tttgatgata atcatttggt ggattgttgt aaaattcgag catgttatct gcttgattaa
     6121 aattatctaa ccaatcagca ggaatgtcag aaactaattg atttcctgta gttagtaatg
     6181 agagcttact ttcccactca gtagtgaaga tattatccgg aagcgtaatt agctcattat
     6241 agcgtacatc cagcgatcct aaatgagggg ataatgtggt tatttctgaa ggaatctctt
     6301 taattttatt tctatttatc tcaatagaac ttagagaagg catctgtaat agaatcatcg
     6361 gaaattcttg aaaattatta ttgtctacgt tgattcttgt tagttttgtt agtttagtga
     6421 tactagttgg aatttctgaa atcgttccat taagggcaag taaagtattg agattcttat
     6481 aatcagaaat tttgtcgggt a
//
LOCUS       DASEAA010000146         6477 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.146, whole genome shotgun sequence.
ACCESSION   DASEAA010000146 DASEAA010000000
VERSION     DASEAA010000146.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6477)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6477)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6477
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.146"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(109..960)
                     /gene="prmC"
                     /locus_tag="U0342_002318"
     CDS             complement(109..960)
                     /gene="prmC"
                     /locus_tag="U0342_002318"
                     /EC_number="2.1.1.297"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor N(5)-glutamine
                     methyltransferase"
                     /protein_id="HEM2423658.1"
                     /translation="MTQISQLLKNAEAILLEKGLDQNAAEILLETRMGLSRSELWMEI
                     SRELEPNHEKQFEEDFARYLAGEPVQYILKTAPFYGYDFLVTEDVLIPRPETEELVAC
                     AEDFLKKHPVKNVLDVCTGSGIIAIALKKAFPDISMTASDISAPALAVAKKNALLLNA
                     DVRFVETDLLEAFKQNEERFDMIVANPPYISEAEKAEMSDYVLKNEPSLALFAENDGL
                     AIYERFVDNLQYVLNSSFWVGVEIGYTQGERVKQLFEKSYPHSTVIIHKDINSKDRYV
                     TCSNILV"
     gene            complement(947..2023)
                     /gene="prfA"
                     /locus_tag="U0342_002319"
     CDS             complement(947..2023)
                     /gene="prfA"
                     /locus_tag="U0342_002319"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide chain release factor 1"
                     /protein_id="HEM2423659.1"
                     /translation="MYDRLQAVEDRYDELNELLSDPDVVSDPKRLRDLSKEQSGITAT
                     VETYREYKNVNEQINETKELLGEKLDDEMREMAKEEFAELQKEKADLEERLKLLLVPK
                     DPNDDKNVILEIRGAAGGDEAALFAGDLFRMYSKYAESRGWKVEIMDANPTGIGGYKE
                     IIAMMNGNDAFSRMKYENGAHRVQRVPETESGGRIHTSTATVAILPEAEEVEIELHDK
                     DIRTDTFASTGAGGQSVNTTMSAVRLTHIPTGIVVSMQDERSQLKNKDKAMKVLRARV
                     YDKFEREAREEYDANRKSAVGTGDRSERIRTYNYPQNRVTDHRIGLTIQKLDQIMEGK
                     LDEIIDALILEDQTSKLEHLNDAN"
     gene            complement(2046..2621)
                     /locus_tag="U0342_002320"
     CDS             complement(2046..2621)
                     /locus_tag="U0342_002320"
                     /EC_number="2.7.1.21"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thymidine kinase"
                     /protein_id="HEM2423660.1"
                     /translation="MAQLFFRYGSMNSGKTIEILKVAHNYEEQNKTVAIFTSGIDDRD
                     QVGFISSRIGLKREATPIFSDTNIFEIVANIKPKPNCVLLDESQFLEKEHVFQLAKIV
                     DELNIPVIAYGLKNDFRNELFEGSKYLLLYADKLEEMKTICWFCAKKATMVLRVDDKG
                     KPVYTGEQIMIGGNDHYYPVCRKCHANPPIK"
     gene            complement(2733..3599)
                     /locus_tag="U0342_002321"
     CDS             complement(2733..3599)
                     /locus_tag="U0342_002321"
                     /EC_number="2.7.1.39"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine kinase"
                     /protein_id="HEM2423661.1"
                     /translation="MRIRVPATTANLGPGFDSCGLALTLYLTLDIGAEADSWYIEHNI
                     GGGIPHDETNVIIETALNLAPNLTPHHLVMTCDIPPARGLGSSSAAVVAGIELANTLA
                     ELNLSKEEKVRIAAEIEGHPDNVAPAVLGNWVVGAKLDGEDFYVRHLFPDCALIAFIP
                     KAELLTSESRGVLPDTLPFKEAVQASSIANVMIAAILRNDMALAGEMMERDLWHEKYR
                     SQLVPHLTQIRDVAKSQGAYAACLSGAGPTVLVFAPRNLANTLQTSLQTLEIDADVLL
                     LDVEGSGAEVFR"
     gene            complement(3599..4654)
                     /locus_tag="U0342_002322"
     CDS             complement(3599..4654)
                     /locus_tag="U0342_002322"
                     /EC_number="4.2.3.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="threonine synthase"
                     /protein_id="HEM2423662.1"
                     /translation="MYKGLLEKYKEYLPVTDKTPMISLAEGNTPLIPLPNLSKELGVT
                     LYGKYEGLNPTGSFKDRGMVMAVAKAKEEGAEAVICASTGNTSAAAAAYATRAGLKAY
                     IVIPEGKVALGKLAQAVMYGADIISIQGNFDEALKSVRELAETEAVTLVNSVNPYRLE
                     GQKTAAFEICEQLGSAPDVLAIPVGNAGNISAYWKGFKEWNEAKASGLPRMHGFEAEG
                     AAAIVQGKPIDNPETIATAIRIGNPASWELAEAARDESGGYIHSVTDDEIVNAYKKIA
                     AQDGVFIEPGSAASLAGVIQHVANGTIKKGETVVCVFTGNGLKDPDTAMSVHEIPISH
                     VDDIEAMRTHLRSGVKA"
     gene            complement(4657..5943)
                     /locus_tag="U0342_002323"
     CDS             complement(4657..5943)
                     /locus_tag="U0342_002323"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="homoserine dehydrogenase"
                     /protein_id="HEM2423663.1"
                     /translation="MEAKLQVGVLGFGTVGSGVIHILEEHQEKISQVTGYHISVKKVL
                     VRDLEKNRRYETKGFELTTNPSDVLDDPEIAVVVEVMGSITTAREYILQALKAGKHVV
                     TANKDLIALHGDELVAVAQANNCDLFYEASVAGGIPILRTIVNSLAADKIQKVMGIVN
                     GTTNFMLTKMTTEKKSYEDVLAEAQALGFAESDPTNDVDGIDAARKMVIMTRLAFGMN
                     VNLDNVETNGIRGISPEDIDVAYQLGYKIKLVGTAEETNGTVNVNVGPVLLPKAHPLA
                     GVNYENNAVFVTGAAVGETMFYGPGAGELPTATSVVSDLITVAKNSRLGTNGNAFNSY
                     KHETKHTPKEQVFSKYYLRLTMDDKTGTFLKLTQIFAEAGVGFDKILQQPYDDFTATV
                     VIVTHSTSQAQLEQAIARVKDEPEMQMLAKYSVVEG"
     gene            complement(6165..6410)
                     /locus_tag="U0342_002324"
     CDS             complement(6165..6410)
                     /locus_tag="U0342_002324"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type B 50S ribosomal protein L31"
                     /protein_id="HEM2423664.1"
                     /translation="MKTGIHPEYRPVVFVDTSTDFKFLSGSTKSSSETIKWEDGNEYP
                     LLRVEISSDSHPFYTGKQKHATADGRVDRFNKKYGLK"
BASE COUNT         1761 a         1439 c         1157 g         2120 t
ORIGIN      
        1 cattttcttt attaagattt gattaaaaaa attttttgca caacatttta tccacagttt
       61 tgtggataac tttccaaaga aaaagacgct tcttttatag aaacgccttt ataccaatat
      121 attagaacat gttacgtagc gatcttttga attgatatct ttgtggataa taactgtaga
      181 atgtggataa cttttttcga ataattgttt tacacgctcg ccttgtgtat aacctatctc
      241 cacccctacc caaaaagagg aatttaggac atattgtaag ttatccacaa atcgttcata
      301 aatagcaagt ccatcatttt cagcaaataa tgctaatgaa ggttcgtttt ttagcacata
      361 atccgacatt tctgcttttt ctgcttcaga aatatagggc ggattggcga caatcatatc
      421 gaatcgttct tcgttttgtt taaatgcttc aagtaaatct gtttcgacaa aacgcacatc
      481 cgcatttaat aacaatgcat tctttttcgc cacggcaagt gctggagcag aaatatcaga
      541 agccgtcatc gaaatatcag gaaatgcttt tttgagcgca atcgcgataa tcccgcttcc
      601 ggtgcataca tctagtacgt ttttaactgg atgttttttc aaaaaatcct ccgcacaagc
      661 gactaactct tctgtttcgg gacgcggaat aaggacatct tctgtcacta aaaaatcata
      721 gccataaaaa ggtgctgttt ttaaaatata ctgcaccggc tcaccagcta agtatctagc
      781 aaaatcttcc tcgaattgct tttcatgatt tggttcaagt tcacgactta tttccatcca
      841 aagctcagaa cgcgaaagtc ccattctggt ttctagtaaa atttctgctg cattttggtc
      901 tagccctttt tcaagaagga tggcttcagc attttttagc aactgactaa tttgcgtcat
      961 ttaaatgctc caatttactt gtttgatctt ctaggataag cgcatcaatg atttcatcga
     1021 gtttaccttc cataatttga tctagctttt gaatggttaa gccgatgcga tggtcggtta
     1081 cgcggttttg cggatagttg taagtccgga tacgttcgga gcggtcaccc gtacctacag
     1141 ctgatttacg gttggcatca tattcttcgc gagcttcacg ttcaaattta tcatatacac
     1201 gtgcgcgtaa tactttcatc gctttgtctt tattttttag ctgggaacgt tcatcttgca
     1261 tcgatacgac aatcccggtt ggaatatgcg ttagacgtac agctgacatc gtcgtattga
     1321 cactttgtcc accggcacca gtagacgcaa atgtatcagt gcggatatct ttatcgtgca
     1381 gttcaatttc tacttcttcc gcttctggca aaatggctac tgtcgctgtt gatgtatgga
     1441 ttcgaccgcc tgattctgtt tctggtactc gttgaacacg gtgcgccccg ttctcatatt
     1501 tcattcggga aaaggcatca tttccgttca tcatcgcaat aatttctttg taaccgccaa
     1561 taccggtcgg gttcgcgtcc atgatttcta ctttccagcc gcgtgattcc gcatatttgc
     1621 tgtacatacg gaataaatcg ccggcaaata aagctgcttc atctcctcca gctgctccac
     1681 ggatttctaa aataacgttt ttgtcatcat taggatcttt tggaacgagt aatagtttta
     1741 gtcgttcttc taagtctgcc ttttcttttt gaagttccgc gaattcttct ttggccattt
     1801 cgcgcatttc atcgtctagt ttttctccta ggagttcctt tgtttcgtta atttgttcgt
     1861 tcacattttt gtattcgcgg tacgtttcga ctgtcgccgt aatgccggat tgttctttgg
     1921 aaaggtcgcg tagtcgtttt ggatccgata ctacatctgg atcacttaat aactcattta
     1981 gttcatcata acggtcttcc accgcctgta atcgatcata cattgtattt caacacctct
     2041 tttaattatt ttattggtgg attggcatga catttgcgac acacagggta atagtggtca
     2101 tttccgccaa tcataatttg ttcacctgta taaactggtt ttcctttgtc atccacgcgc
     2161 agaaccatcg ttgccttttt agcacaaaac cagcaaattg ttttcatttc ttctagttta
     2221 tctgcatata atagcaagta tttcgagcct tcgaataatt catttcgaaa atcatttttt
     2281 aaaccataag caataactgg gatatttaat tcatccacaa ttttcgctaa ctgaaatacg
     2341 tgttcttttt ctagaaattg cgattcatct aaaagaacgc aatttggttt tggtttaata
     2401 ttcgctacga tttcaaaaat atttgtgtca ctaaaaatag gagttgcttc tcgtttcagt
     2461 ccaattcgac ttgaaatgaa gccaacttgg tctctatcgt caatacctga agtaaagata
     2521 gccactgttt tattttgttc ttcataatta tgtgcgactt ttagaatttc aatggttttc
     2581 ccactattca tggaaccata acggaaaaat aattgtgcca ttaagaccgc tccctttaac
     2641 tttataaact cttttcctat tttatcatag agcggcacaa attgggacat atagttaaaa
     2701 aaagctacgc cgcatagggg catagcttga ttttaacgaa aaacttctgc gccgctccct
     2761 tcgacatcaa gaagaagaac gtctgcatcg atttccagtg tttgtaaaga tgtttgcagt
     2821 gtgttagcga ggtttcttgg agcgaatact aagacagttg ggcccgcacc gctcaaacaa
     2881 gcagcatagg ctccttggct ttttgcaaca tcgcgaattt gtgttaagtg tggcactaat
     2941 tgactgcgat atttttcatg ccataaatca cgttccatca tttcaccagc tagcgccata
     3001 tcattgcgta aaattgctgc aatcattaca ttggcgatac tgctcgcttg gacagcttct
     3061 ttgaatggaa gcgtatcagg caaaacaccg cgactttccg aagtaagaag ttctgccttt
     3121 ggaataaaag caattaaagc acaatccgga aaaaggtggc gtacatagaa atcttctcca
     3181 tctaatttcg ctcctacgac ccagtttcca agaacagcag gcgcaacatt atcgggatgc
     3241 ccttctattt cagcagctat ccgaactttt tcctcttttg aaaggttaag ttcagcaagt
     3301 gtattggcta attcaatccc cgcaacaacc gctgcagaac tactaccgag tccacgagct
     3361 ggcggtatat cacaggtcat cactaaatga tgcggcgtta aattaggcgc caggtttaag
     3421 gccgtttcga taattacatt ggtttcatca tgcggaatcc cgccgccaat attatgttcg
     3481 atataccaag agtctgcttc cgctccaata tcaagcgtta aatataacgt taacgctaaa
     3541 ccacacgaat caaagccagg gccaagattg gccgttgttg ccggtacacg aatacgcatt
     3601 aagctttcac tcctgaacgt aaatgtgtgc gcattgcttc gatatcatcc acatgagaaa
     3661 ttggaatttc atgcacactc atcgcagtat ccggatcttt caagccgttt ccagtaaaga
     3721 cacaaactac tgtttcgcct tttttaattg ttccatttgc tacatgttgg atgacaccag
     3781 ctaatgaagc ggctgaacct ggctcgataa agacaccatc ttgtgctgca atttttttat
     3841 acgcatttac aatttcatca tctgttacag aatggatata tccgccagat tcatcgcgag
     3901 ctgcttctgc aagctcccaa ctagctggat ttccgatacg aatcgccgtt gcaattgttt
     3961 ccggattatc aatcggttta ccttgaacaa tcgcagccgc accttccgct tcaaaaccat
     4021 gcatccgtgg aagtccagaa gccttggcct cattccactc tttaaaccct ttccagtagg
     4081 cagaaatgtt tccggcatta cctactggga ttgcaaggac atctggagca gaacctaatt
     4141 gctcacaaat ttcgaatgca gctgtttttt gaccttctaa acgataagga tttaccgagt
     4201 ttacaagagt tactgcttct gtttcagcca gttcacgaac cgattttaac gcttcgtcaa
     4261 aattaccttg aattgagata atatctgcgc cgtacataac tgcttgcgct aattttccta
     4321 gagcgacttt gccttctgga ataacaatgt acgcttttaa tcccgcacgt gttgcgtatg
     4381 ccgcagccgc agcagaagta ttcccagtgg atgcacaaat aaccgcttcg gcaccttctt
     4441 ctttcgcttt agcaacagcc ataaccattc cacggtcttt aaaagaaccg gttggattta
     4501 agccttcata ttttccgtat aaagtaacac ccagttcttt ggacaaattc ggtaatggaa
     4561 taagtggtgt atttccttcc gcaagtgaga tcattggtgt tttatcagtt actggtagat
     4621 attctttata tttttctagt aaacctttat acatatttaa ccctccacaa cggaatattt
     4681 tgcgagcatt tgcatttctg gctcatcttt gaccctagcg attgcttgtt ctaattgtgc
     4741 ttgactagtt gaatgtgtca cgataacaac ggtcgccgta aaatcatcat acggttgttg
     4801 caaaatttta tcaaaaccaa caccggcttc tgcaaaaatt tgcgtcaact taaggaaggt
     4861 tcctgtttta tcgtccattg ttagacgaag atagtatttc gagaaaactt gttctttcgg
     4921 tgtatgcttc gtttcgtgtt tgtagctgtt aaaagcattc ccattagtac caagacggct
     4981 atttttagca acggtaatta aatcactaac cacactggtc gcagttggta attcgccagc
     5041 accaggtccg taaaacattg tttctccgac tgctgcacca gttacaaata cggcattatt
     5101 ttcatagtta acacctgcaa gcggatgagc ctttggtaat aaaaccggcc ccacgttgac
     5161 attaactgtg ccgtttgttt cttccgccgt acctactagt ttaattttat aacctaattg
     5221 gtaagctaca tcgatatctt caggcgaaat cccgcgaata ccatttgttt ctacattatc
     5281 taaattcaca ttcataccaa atgcgagtct tgtcataata accatttttc ttgcggcatc
     5341 gattccgtct acatcatttg ttggatcaga ttcggcaaaa cccagcgctt gtgcttctgc
     5401 taaaacatct tcatatgact ttttctctgt cgtcattttt gttagcatga aattggttgt
     5461 cccgttgacg attcccatta ctttttgaat tttatctgct gcaaggctgt ttacgatcgt
     5521 acgtaaaatt ggaattccac ctgcaacact tgcttcataa aacaaatcac agttattagc
     5581 ttgtgcaact gccactaatt cgtcgccgtg tagcgcaatc aaatccttat tcgcagttac
     5641 tacatgcttt ccagctttca aggcctgcaa aatgtattcc cgcgcagttg tgatgctgcc
     5701 cataacctcg acaacaacag caatttctgg atcatccagt acatcagacg gattggtggt
     5761 tagttcaaaa ccttttgttt cataacggcg atttttttct aagtcacgaa ctagcacttt
     5821 cttaacagaa atatggtatc cagttacttg actaattttt tcttgatgct cttctaaaat
     5881 atgaataaca ccgctaccta ccgttccaaa tcctaacaca cctacttgta actttgcttc
     5941 cacttgaaaa cctccttatt attgtttaac aaaacagaaa atttaacttt tttaatacct
     6001 actcataaaa aaagtaatta gtgatattat acgcaacttc acagggaaaa gtaaaccctt
     6061 gaaaggaaag tttttatttt tagtagttct gagaaataat tccataaaaa aacacaccca
     6121 gcaaaagctg agtgcgcaaa ttatttcgtt cgttacatac agtcttattt gagaccgtat
     6181 tttttgttga agcggtccac acggccgtct gcagtcgcat gtttttgttt accagtatag
     6241 aacgggtgcg aatcagaaga gatttcgaca cgtagtaatg gatactcgtt gccatcttcc
     6301 catttaattg tttcgcttga gctcttagta gaacctgaca aaaatttgaa atcagtacta
     6361 gtatcaacaa ataccactgg acggtactca ggatgaattc cagttttcat ttcttttcaa
     6421 ctccttcgcc ctgaatcatc tgaaacagag taattaagtg cttttacaca cagtata
//
LOCUS       DASEAA010000147         6473 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.147, whole genome shotgun sequence.
ACCESSION   DASEAA010000147 DASEAA010000000
VERSION     DASEAA010000147.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6473
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.147"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(1..1287)
                     /locus_tag="U0342_002325"
     CDS             complement(1..1287)
                     /locus_tag="U0342_002325"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM2423665.1"
                     /translation="MEKITFEQVKEAVFHEKMANGLQVYLLPKQGFSKTYAVFTTNYG
                     AIDNNFVPIGETEFTKVPDGIAHFLEHKMFEKEDGDVFFKFGEKGAFTNAFTSFTKTA
                     YLFSSTSRVEENLETLIDFVQEPYFTEETVEKEKGIIGQEIRMYDDDPDFRAYFGVIE
                     NMYHNHPVKIDIAGTVESIAEINKDLLYLCYNTFYHPSNMVLFVVGNLEPEQMMDLIR
                     ANQAKKEFAEAAPIKRHFPEEPKTVAVKERKIHFPVQIAKNLVGIKEDIGSLEGQAAL
                     KQEIIGDVALEMLFGTTSDTYLKLYNEGIIDDTFGYDYTLQDSFSFVLVGGDAKDPDK
                     QTEKIKEAMKEAAKNGLNESDLALVKRKRIGQFLRSLNSPEFIANQFSQYVMKSASLF
                     DILPLLEEVTLEEVNAFVKNLDQEERTTSFQLLPEQ"
     gene            complement(1268..2560)
                     /locus_tag="U0342_002326"
     CDS             complement(1268..2560)
                     /locus_tag="U0342_002326"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="insulinase family protein"
                     /protein_id="HEM2423666.1"
                     /translation="MTDKIFQEKVGPVALTIVPTQKYKSNKIVFKFRAPLERETVTKR
                     ALLSILLETNSEKYPTQTAFRKQLANLYGANFYTTTAKKGNEHVLTVIFDMIDGQYVS
                     DGIHILEDAFAFIEQALFHPNVTNGAFNDETLAREKENLKSSLEGIYDDKIRFASKRL
                     VEEMFRDDEFRFGSAGVLEDIDAITAKDLYEYYLQFIAEDAIEIFICGDVTKEEVLPL
                     IEKMAFAPRAERKGVFYTKEAPNVVRTIHEQQAINQGKLVLGYQTETLFGDDDFVALQ
                     LANGLLGGFANSKIFINVREKASLAYYASSRIDSFKGYMIISAGIDEVNYEQALKIIE
                     EQVVAMKQGNFTEDELNQTKEMLINQLLETNDQAQGLIELVYNNVLRKANLDLENWIA
                     KIKQATKEEVVAVINKIKPDTIYFLSKGGEELHGKNHI"
     gene            complement(2677..3627)
                     /locus_tag="U0342_002327"
     CDS             complement(2677..3627)
                     /locus_tag="U0342_002327"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464916.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423667.1"
                     /translation="MTAILATIISSTLLMAGPLIFTALGGVYSERGGVVNIGLEGMMV
                     MGAFSAIVFNLTFQDTFGNLTPWISLIAAMVVGGLFSLVHAVATINFRADHVISGVAI
                     NFLATGLSLFLVKVIYDKGQTDQIKYYFGKPDIPVLSDIPVIGDIFFKNIPVMSYVAI
                     LFAIASWFIIYKTRFGLRLRSVGEHPLAADTMGIKVRWMRYQGVIISGILGGLGGAVY
                     AQSFTLDFGHATISGQGYMALAAMIFGKWNPLGAMGAAIFFGFAQCLAITGGSLPFFK
                     DIPDVYLQIAPYVLTILALVGFIGKSEAPKADGVNYIKGK"
     gene            complement(3624..4676)
                     /locus_tag="U0342_002328"
     CDS             complement(3624..4676)
                     /locus_tag="U0342_002328"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423668.1"
                     /translation="MSKRLQALVIPVTAVILGLICGAIIMLIFGYDPIAGYSALIQGV
                     IGENFYIGETIRQATPYILVGLSVAVAFKAGLFNIGAEGQMLMGWLGSIIIAVNFDGL
                     TKWIHLPLAIITGMVFGALWAFIPGILKATLRVNEVIVTIMLNYTALYIFNYVVQNLL
                     TDGLDKTQEIHASASLQSELLQSLTDYSSLHWGILIALGFALIIWLMLNKTTFGYEIE
                     AVGFNENASQYAGMSVKKTIIFSMVIAGALAGLGGVMEGLGTYGTAYVLTSSPGIGFD
                     GIAVALLGGSSPIGIVFSAILFGALKVGALNMPAVAGVPNELVNVIIALIIFFVASSY
                     IIRWAMAKFKKGAKAE"
     gene            complement(4669..6210)
                     /locus_tag="U0342_002329"
     CDS             complement(4669..6210)
                     /locus_tag="U0342_002329"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423669.1"
                     /translation="MDFVIEMLGIRKEFSGFVANDNITLQLKQGEIHALLGENGAGKS
                     TLMNVLFGLYEPDGGEIRVRGTKENINSPNKANELGIGMVHQHFMLVDKFTVAENIIL
                     GKEPSKLGVIEKKKAIEEIKEISDRYGLRVDPNAVVRDISIGMQQRVEILKTLYRGAD
                     ILIFDEPTAVLTPQEIKELIQIMRSLIKEGKSIILITHKLKEIMDVCDRVTVIRRGKG
                     MGTVNVPETTPQDLANLMVGREVVFTTEKIDAKPGKDVLEVKDLVVKESRGVESVRGL
                     NLTVRAGEIVGIAGVDGNGQSELISAIAGLSKVTSGSILLNGEHIENKKPRKITEAGL
                     GHIPEDRHKHGLVLEMSLGENIALQTYYKKPISSKGFLNHKAMYDFARELIEEYDVRA
                     SSEYVAAKSLSGGNQQKAIIAREIHRNPDFLIAAQPTRGLDVGAIEFIHRRLIEQRDN
                     GKAVLLMSFELDEIMNVSDRIAVIYEGKIVAIVDPKETTEQELGLMMAGSSKQEAEMG
                     EKEHV"
BASE COUNT         1927 a         1348 c         1100 g         2098 t
ORIGIN      
        1 ttattgttct ggaagtaatt ggaaacttgt tgttcgctct tcttgatcca aatttttaac
       61 aaatgcattt acttcttcta gggtaacttc ctccaataaa ggtaaaatat cgaataaaga
      121 agctgatttc ataacgtatt ggctaaattg gttcgcaata aactccggag aattcagcga
      181 acgcaaaaat tgaccaattc gtttgcgttt tactaatgct aaatcagatt catttaagcc
      241 gtttttggca gcttctttca ttgcttcttt gattttttcg gtttgtttat ctggatcttt
      301 ggcatctcca ccaactaata cgaacgagaa gctatcttgt aaggtgtaat catagccaaa
      361 tgtgtcgtca atgattcctt cgttgtataa cttcaagtaa gtgtcagagg ttgtgccaaa
      421 gagcatttcc aaggctacat ctccaataat ttcttgtttt aaagcagctt ggccttctaa
      481 agagccaata tcttctttaa tccctacaag gttcttagca atttgaacag ggaaatgaat
      541 tttacgctct ttcactgcaa ctgtttttgg ttcttcaggg aaatgacgtt tgatcggtgc
      601 agcttcagcg aattcttttt tcgcttgatt ggcgcgaatc aggtccatca tttgttctgg
      661 ttctaaattc cctacaacaa aaaggaccat gttgctaggg tgatagaatg tgttatagca
      721 aagatacagt aaatctttgt taatttcggc aatcgattca acggttccag caatatcgat
      781 ttttactgga tgattatgat acatattttc gattacgcca aaataagcgc gaaaatcagg
      841 atcatcatca tacattctga tttcttggcc gataatacct ttctcttttt caacagtttc
      901 ttctgtgaaa tacggctctt gtacaaagtc aatcagcgtt tccaagtttt cttccactcg
      961 agaagtactc gagaaaagat aagctgtttt tgtgaaagag gtaaatgcat tcgtaaacgc
     1021 gcctttttcg ccaaatttga agaatacatc gccgtcttct ttttcaaaca ttttatgttc
     1081 taagaaatgg gcaataccat ctggtacttt cgtgaattct gtttcaccaa ttgggacgaa
     1141 gttattatca attgcaccgt aatttgttgt gaatacagca taagtcttac taaaaccttg
     1201 ttttggaaga agatacactt gtaagccatt tgccattttt tcatgaaaga ctgcttcttt
     1261 tacttgctca aatgtgattt tttccatgaa gttcttctcc tcccttactt aagaaataaa
     1321 tggtatctgg tttaatttta ttgataacag caactacttc ttctttggtt gcttgtttga
     1381 ttttcgcaat ccaattttct aagtctaagt ttgctttacg cagaacattg ttatatacaa
     1441 gttcgattaa cccttgcgct tgatcatttg tttcaagcaa ttgattaata agcatttctt
     1501 ttgtttggtt taattcatct tctgtaaaat tgccttgttt cattgctact acttgttctt
     1561 caataatttt taaggcttgt tcgtaattta cttcatcaat tccagctgaa ataatcatat
     1621 aacctttgaa agaatcaatt cggcttgaag cataataagc cagactcgct ttttcgcgaa
     1681 cgttgataaa gattttcgaa ttagcaaatc cgccaagaag cccatttgca agttgaagtg
     1741 caacgaaatc atcatctcca aataaggttt ctgtttgata accaagtaca agtttccctt
     1801 gattaatcgc ttgttgctca tgaatagtgc gcactacatt tggagcttct tttgtataaa
     1861 aaacaccttt tcgttcagca cgtggcgcaa aagccatttt ttcgataaga ggcaatactt
     1921 cttcttttgt tacatctcca caaataaata tttcgatagc atcttctgca ataaattgta
     1981 agtagtattc atataaatct ttcgctgtga tagcatcaat gtcttctaaa acgccagctg
     2041 agccaaaacg aaactcatca tcgcggaaca tttcttctac tagtcgttta gaagcaaaac
     2101 gaattttgtc atcgtaaata ccttctaaac tacttttcaa gttctctttt tcgcgagcaa
     2161 gtgtttcatc attgaaagcg ccgtttgtca catttggatg gaataatgct tgttctataa
     2221 aagcaaaagc atcttccaaa atatgaattc cgtccgatac atattgccca tcaatcatat
     2281 cgaaaataac agttaatacg tgttcattac cttttttagc tgttgttgta taaaaattag
     2341 caccgtaaag attcgctaat tgctttctga aagctgtttg agttgggtat ttttcactat
     2401 ttgtttctaa taatattgaa agtaaagccc gtttagttac tgtttctctt tctaatggag
     2461 cgcgaaattt gaaaacaatt ttattggatt tatatttttg ggttggaaca attgttagtg
     2521 caaccggacc aactttttct tgaaatattt tgtctgtcat tataatgctc ctttcaagca
     2581 atgatctcac tttcctattg tatcttaagt tgttgccacg cacaattttc tagcataaaa
     2641 aacagcctag aatttaatct aggctgttta ctcgtattat ttacctttaa tgtagttcac
     2701 accatctgct tttggtgctt cggatttacc gataaagcca acaagcgcta agatagttaa
     2761 tacataaggc gcaatttgta agtaaacgtc tggaatgtct ttgaagaatg gtagcgatcc
     2821 gccggtaatt gccaaacatt gcgcaaatcc gaagaaaata gctgccccca ttgctccaag
     2881 tgggttccat ttaccaaaaa tcatcgctgc aagggccata taaccttgac cggaaatagt
     2941 tgcgtgtccg aaatcaagtg taaaggattg ggcgtaaacc gcgccaccta gaccgccaag
     3001 gataccagaa atgataaccc cttggtatct catccagcga actttgattc ccatcgtatc
     3061 tgctgcaaga ggatgttccc ctacagaacg aagacgaaga ccaaaacgcg ttttataaat
     3121 aataaaccaa gatgcgattg caaatagaat cgccacataa ctcattaccg gaatgttttt
     3181 gaagaaaata tcaccaataa ctggaatatc acttaaaaca ggaatatccg gtttaccaaa
     3241 gtagtactta atttgatctg tttggccttt atcataaatt acttttacaa ggaataaaga
     3301 tagaccggtt gctaaaaagt taatcgctac accactgatt acgtggtcag cgcggaagtt
     3361 aatagttgca acagcatgta caagagagaa taatccccca acgaccatcg ccgcaataag
     3421 tgaaatccaa ggagttaaat tgccgaaagt gtcttggaaa gtaaggttaa agacgatagc
     3481 agagaatgct cccataacca tcataccttc tagtccaata ttaaccacac cgcctcgttc
     3541 tgaataaacg cccccgagag cagtaaaaat tagtgggcct gccataagca gtgtactaga
     3601 aataattgtc gctaaaatgg ctgtcattct gctttcgccc ccttcttaaa ttttgccatc
     3661 gcccagcgga taatgtagct ggatgccaca aagaagataa tcagagcgat aattacattg
     3721 accaattcgt ttggaacgcc tgcaactgct ggcatgttta gtgctcctac ttttagagcg
     3781 ccgaacaaga tggcagagaa gacaatccca attggagaac ttcctccgag taatgcaacg
     3841 gcaataccgt caaaaccaat ccctggagaa gaagttaata cataagccgt tccgtatgtt
     3901 ccaagacctt ccattacacc accaagacca gcaagcgctc cggcaataac catggaaaag
     3961 ataattgttt tctttacact cataccggca tattgcgatg cattttcgtt aaatccaact
     4021 gcttcgattt cgtaaccaaa agtagttttg tttaacatta accaaataat aagtgcaaaa
     4081 cctagggcta ttaaaatccc ccaatgtaga gacgaataat ctgtaagtga ttgtaataat
     4141 tcagattgta aggaagcgga cgcatgaatt tcttgcgttt tgtccaaacc atctgtaagt
     4201 aaattttgta cgacatagtt gaaaatataa agtgccgtgt aattaagcat gattgttacg
     4261 ataacttcat tcacacgtaa agttgctttt aatatacctg ggatgaatgc ccaaagtgca
     4321 ccaaaaacca taccagtaat aatcgcaagt ggtaaatgaa tccatttagt taaaccgtca
     4381 aagtttacag cgatgataat ggaacctaac catcccatca gcatttgacc ttccgcacca
     4441 atattgaaaa gtccggcttt aaatgcaact gcaacagata gaccaactaa aatgtacggt
     4501 gtagcttggc ggattgtttc accaatatag aaattttctc cgataacacc ttgaatcaga
     4561 gccgaataac cagcaattgg gtcatatcca aaaataagca tgataatcgc accgcagata
     4621 agtccaagga taacggctgt aactgggata actaatgctt gtagtcgttt agacatgctc
     4681 tttctccccc atttccgctt cctgtttgga tgaaccagcc atcatcagac caagttcttg
     4741 ctccgttgtt tctttcggat caacaatagc aacgattttc ccttcgtata taaccgcaat
     4801 acggtcactt acattcatga tttcatctaa ttcgaacgac ataagtaaaa cagcttttcc
     4861 attatctcgt tgttcaatca agcgtctatg aatgaattca attgctccaa catctagtcc
     4921 acgtgttggc tgagccgcaa ttaagaaatc tggattacgg tgtatctccc ttgcaataat
     4981 tgctttttgt tggttaccac cagaaagcga ttttgctgct acgtattcgc tacttgcacg
     5041 aacatcgtat tcttcaatta actcacgcgc aaagtcgtac attgctttat gatttaagaa
     5101 gcctttgcta gaaataggtt ttttataata tgtttgtaaa gcaatatttt ctcctagaga
     5161 catttcgagt actaaaccat gtttatgacg gtcttctgga atatgtccta aaccagcttc
     5221 cgtaatttta cgaggttttt tgttttcgat atgctcgcca ttaagaagaa tactaccact
     5281 agttacttta gaaagacctg caatcgctga aataagttca ctctgaccat taccatcgac
     5341 tccagctatt ccgacgattt cgccagctct gacagtcaaa ttaagtccac gaacactttc
     5401 aactccgcgg ctttctttca caactaaatc ttttacttct aaaacatctt tgccaggttt
     5461 ggcatctatt ttctctgttg taaagaccac ttcacgacca accattaaat tagccaaatc
     5521 ttgtggtgtt gtttccggaa cattaacagt acccatacct ttaccacggc gaataacagt
     5581 tacacggtca caaacatcca tgatttcttt tagtttatgt gtgattaaaa tgatggattt
     5641 gccttcttta ataagggaac gcataatttg gattaattct ttgatttctt ggggtgtcaa
     5701 aacagctgtt ggttcatcaa aaatcaagat atctgcacca cggtaaagcg tttttagaat
     5761 ttccacacgc tgttgcatac cgattgaaat atctcgtaca actgcatttg gatcaacgcg
     5821 taagccgtaa cgatcagaaa tttctttaat ttcttcaatc gcttttttct tttcgataac
     5881 accgagtttg cttggctctt taccaaggat gatgttttct gcaaccgtga atttatccac
     5941 taacatgaaa tgttgatgga ccattccgat tccaagctca tttgctttgt tcgggctatt
     6001 gatattttct ttcgtaccac gaacacgaat ttcgccacca tctggttcat ataaaccaaa
     6061 caagacattc attagcgtag atttacctgc gccattctca cctaacaaag catgaatttc
     6121 tccctgcttt aactgtaagg taatgttatc atttgctaca aatccagaga attccttcct
     6181 gattcctaac atttcaataa caaagtccac ttcttcactc cccttgtcgt ctggttcaaa
     6241 ctggaaaaac agccacacgc gcgattctct cgaaggacgc cgcctctccc cgtacttcct
     6301 cccgaagaag gttccgagtt ttttatccgt ttgttgttca atgacttttc agcttaaata
     6361 ctttggtatg ttgtaaaatg cgatttataa taccatctat gtacgaaagt ttactttgca
     6421 tttttaagct attaaaaaag ccatctcctt attttatttc taaatggcat tca
//
LOCUS       DASEAA010000148         6419 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.148, whole genome shotgun sequence.
ACCESSION   DASEAA010000148 DASEAA010000000
VERSION     DASEAA010000148.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6419)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6419)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6419
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.148"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..79)
                     /locus_tag="U0342_002330"
     CDS             complement(<1..79)
                     /locus_tag="U0342_002330"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CvpA family protein"
                     /protein_id="HEM2423670.1"
                     /translation="MILNAIILILLVCGFFAGFRTGLIKQ"
     gene            complement(79..342)
                     /gene="zapA"
                     /locus_tag="U0342_002331"
     CDS             complement(79..342)
                     /gene="zapA"
                     /locus_tag="U0342_002331"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464754.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein ZapA"
                     /protein_id="HEM2423671.1"
                     /translation="MANERNKVVTTIYGREYTIVGVETTDHLRKVAREVDEKMHEIGS
                     QNHALDSGRLAVLTAVNATHDYLKLEQKYLELEQELARIKGRD"
     gene            496..1422
                     /locus_tag="U0342_002332"
     CDS             496..1422
                     /locus_tag="U0342_002332"
                     /EC_number="3.1.26.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease HIII"
                     /protein_id="HEM2423672.1"
                     /translation="MANTVILVDQPTLEKMKQTYLPFSNPKLPPGAVFAAKKTGVSIT
                     GYKSRKVMFQGVNGEVEAKKWVATLPESKTKAPSVSKGILPANFASKNVIGSDEVGTG
                     DFFGPITVCAAYVDAEMMPLLKELGVKDSKAMKDPEICRIAEKIMPLVPHSVLLCPNP
                     KYNELQKRGMNQGQMKALLHNRAIENVLKKLAPVKPEAILIDQFAEKNTYYRYLAKEP
                     SIIREDVFFATKAEGLHLSVAAASIIARYKFVQAFDAMSKEVGIPLPKGAGPHVDAVA
                     AEIIERFGLETLAKYTKQHFANTEKALKMVKK"
     gene            complement(1460..2134)
                     /locus_tag="U0342_002333"
     CDS             complement(1460..2134)
                     /locus_tag="U0342_002333"
                     /EC_number="3.2.2.27"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uracil-DNA glycosylase"
                     /protein_id="HEM2423673.1"
                     /translation="MIKLGNDWDELLKDEFNQPYYLTLRQFLKKEYQTKKVFPDMYDI
                     FNALKYTACKDVKVVILGQDPYHGPGQAHGLSFSVQQGVQIPPSLQNIYLELHNDLNC
                     EIPNNGYLIRWADQGVLLLNTVLTVRAGQANSHRGQGWEILTNRIIEIINQKEEPVVF
                     LLWGNNAKEKLQLLTNPKHTAFTSVHPSPLSASRGFMGCKHFSKTNQFLEQNGVKPID
                     WQIPSI"
     gene            complement(2238..5438)
                     /locus_tag="U0342_002334"
     CDS             complement(2238..5438)
                     /locus_tag="U0342_002334"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MMPL family transporter"
                     /protein_id="HEM2423674.1"
                     /translation="MKWIMKLRWAILAFWLAAAVVLMIIAPPMADLVREKGELKLPDG
                     YPSSLATEMQKKHNPDDKGSAYIAVYTADHKLTGTELNDIQDSLNSIEKDKDELHVTN
                     VLSSFNQPELKDKFLSKDGKTMVASLTVDDTDASVKSIRNALDKKMDVKGVDTYLTGN
                     KLIQEDVVQGSEDGLHKTEGITVVFILVVLFLVFRSAVAPFIPLVTVGISYLVAQSTV
                     AFLIDIFNFPVSTYTQIFMVCIMFGIGTDYCILLMSRFKEEMGAGLNPREAVHATYRT
                     AGKTVIYSGVAVLVAFTSLYFVQFDLYRSAVAVGVGIVVLLAALYTLVPFFMSTLGTH
                     LFWPLNKNISHKENKIWGAAGKFTFARPWIALLIVAAITLPPILLHTGTESFNSLDEI
                     SDKYPSKKGFEIVSDSFGAGQVAPTQIFIENDDNMRTTDYIAQIEKISDDLSHLKGID
                     MVMSASRPAGKRVDDIYIKNQAGQVNDGVGQATDGVGEVKKGLDSASSELKKSEPALD
                     KAVAGVSDLQKGTVATQEGINQLQTALAQIQTGIESGATGAGDLKQGVAEAKSQLATL
                     QNGEAQIQAGYVEIQKNLQNVADQLKGFEDPSSQAIDTSKLEEQFKKIGASFQAFAAA
                     HPEVRNDPRFQKLAADIQGLETAGNELKTSAGQQMAALQAKMKELNQGIQQLATAMNQ
                     LNEQSKQISDGLSAFSTGLGQIETGLDQLEKGLNQAADGQGQVVSKMPEISNALTQIA
                     AGQGALKDGFAGISGQMGQLTDGLTSGADGLGKVESGLNTANGLIDDWSKVPYASSGI
                     YVPDALLKNADFQKVLDQYISSDGKLATINVILTKNPYSNEAMDSIDDINEQLSASMK
                     GTKLENAKIGIGGMTSANYDTRDMSTADYHLVLVIVLASVFVTLVIVLRSLVMPIYLI
                     ASLVLTYFAALGFAEIIFMRILGYSGLTWATPFFGFVVLVALGIDYSIFLMSRFNEYN
                     GLSVRDRMIKAMKNMGGVIFSAVIILGGTFAAMMPAGVLSLLEIATVVLIGLVLYAVV
                     ILPLFVPVMVKLFGRGNWWPFITRKGDHQENVPPKK"
     gene            complement(5454..5906)
                     /locus_tag="U0342_002335"
     CDS             complement(5454..5906)
                     /locus_tag="U0342_002335"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2423675.1"
                     /translation="MERQKVKQLIKSYQQTYIFAMNQIHQAISEISASTVDLSIEQFF
                     VLREIATYDGISATELAATLAVNKSAITPKLKKLEEKGYIRRERNQQDKRAVVLTISE
                     KGNNVYEECEKQLELLVNEWLEILGEKDSEQFFELFQKITKSVVEPRQ"
     gene            complement(6004..>6419)
                     /locus_tag="U0342_002336"
     CDS             complement(6004..>6419)
                     /locus_tag="U0342_002336"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464749.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423676.1"
                     /translation="TLDSLNIVIVVLITSAALLAFVVLYNLTNINVSERIRELSTIKV
                     LGFYPKEVTMYVYRENIILTLMGIAAGFVLGFFLHRFIITTAEVDQMMFSPAISWTSY
                     LFSGILTLVFATVVMVVMHIKLKRIDMIEALKSVE"
BASE COUNT         1817 a         1309 c         1222 g         2071 t
ORIGIN      
        1 gttgtttgat aaggcctgtt ctaaatcctg cgaaaaagcc gcaaacaagt aaaattaaaa
       61 taatcgcatt taaaatcatt aatctcttcc tttaattcga gccagttctt gctctaactc
      121 tagatatttt tgttctagtt ttaagtaatc gtgtgtcgca ttcacagctg tcagtacagc
      181 aagcctacca ctatctagtg catgattttg ggagccgatt tcgtgcattt tttcatcgac
      241 ctcgcgagct actttacgta agtggtctgt tgtttctacg ccaacaatcg tatattctct
      301 accgtaaatt gttgtcacta ctttatttct ctcatttgcc acgtatattc ctcctcgccc
      361 aaattcattt aggccgctac ttgtcataat cttatcacga aaaagcagga aagaaaagag
      421 tcaaccaccc gtttagccga tattcagtct ttcgtcgtag tatgttacaa tagaactttg
      481 aaaggatgat gccttatcgc aaatacagtt atcttagtcg atcaaccaac acttgaaaaa
      541 atgaaacaaa catatctccc attttctaat ccaaagctac caccaggagc tgttttcgct
      601 gcaaaaaaaa ccggtgtttc catcactggc tacaagtcgc gcaaagtgat gttccaagga
      661 gtaaacggag aagtagaagc aaaaaaatgg gtggcgactc ttccagaatc aaaaacaaaa
      721 gcaccttccg tctctaaagg aattcttccg gcaaacttcg catcaaaaaa tgtcattggt
      781 tcagatgaag ttggcaccgg tgattttttt ggaccgatta cggtttgtgc cgcatatgtg
      841 gacgccgaaa tgatgcccct gttaaaagag ctaggtgtaa aggactcgaa agcaatgaaa
      901 gatccagaaa tttgtcgtat tgctgagaaa atcatgccac ttgttccgca cagtgtgctg
      961 ctttgcccta atcctaaata caacgaactc caaaaaagag gcatgaacca aggacaaatg
     1021 aaagctttac tacataaccg cgcgattgaa aacgtcttga aaaagctcgc acctgtcaaa
     1081 ccagaagcga ttttaattga tcaatttgct gaaaaaaata cgtattatcg ctatttagca
     1141 aaagaaccaa gcattattcg agaagatgtg ttttttgcga caaaagcaga aggattacat
     1201 ctttccgtcg ctgctgcttc gattattgct cgttataaat ttgtgcaagc ttttgatgcg
     1261 atgtcaaaag aagttggcat cccacttcca aaaggcgcag gacctcatgt ggatgctgtt
     1321 gcagcggaaa tcatcgaacg atttggtctg gaaacattag cgaaatatac aaaacagcat
     1381 ttcgctaata cagagaaagc attaaaaatg gttaaaaagt aaaaaaacat ctcgtcaata
     1441 aatggcgaga tgtttttatt tatatagaag gaatttgcca atcaattggt tttacaccat
     1501 tttgttctaa aaattgattc gtcttagaaa aatgtttgca tcccataaaa ccgcgcgatg
     1561 ctgagagtgg actgggatgt acggatgtaa acgcagtatg tttcggattt gttaacaatt
     1621 gcaacttttc tttcgcattg tttccccata gtaaaaagac tacgggctct tctttttggt
     1681 taatgatttc aataatgcgg tttgttagta tttcccagcc ttgtcctcgg tgtgagttgg
     1741 cttgaccggc gcgaacagtt agaaccgtat ttaatagtag cactccttga tctgcccacc
     1801 gtatcaaata accattgttt ggaatctcac aattcaagtc gttatgtaat tccaaataaa
     1861 tattctgcag tgatggtgga atctgcactc cttgttgaac ggaaaatgag agcccgtgtg
     1921 cttgacctgg tccatgatat gggtcttgac cgagtattac cactttgaca tccttacaag
     1981 cggtatattt taacgcattg aaaatgtcgt acatatccgg aaatactttt ttcgtttggt
     2041 attctttttt taggaactgg cgaagggtta aataatacgg ttggttaaac tcatctttta
     2101 gtaactcatc ccagtcattt ccgagtttta tcatgatttt ttcctccttc attcatctaa
     2161 ctatatctta gcaaaatagt ctttggaagc aaactaaaaa ccgcatcccc ttttttaaag
     2221 gaatgcggtt tattatgtta ttttttcggt ggtacgtttt cttgatggtc gccttttctt
     2281 gtaataaatg gccaccagtt gccacgtccg aatagtttaa ccattactgg aacgaagagt
     2341 ggtaaaataa cgacggcata gagtactaag ccgattaaaa cgaccgtcgc aatttcgagt
     2401 aaggaaagca cgccagctgg catcattgcg gcgaatgttc caccgaggat aatgaccgct
     2461 gagaagataa cgccacccat atttttcatg gcttttatca ttctatcgcg tacagaaagt
     2521 ccgttgtatt cgttaaatct tgacatcaag aagatcgaat aatcgatacc gagcgcgacg
     2581 agtactacaa atccgaagaa cggtgttgcc cacgttagac cactgtatcc aagaattcgc
     2641 atgaagataa tttctgcgaa cccaagtgca gcaaagtacg ttaatacgag tgatgcaatc
     2701 agataaattg gcattactag agaacgcaag acgataacaa gtgtcacgaa aacactcgct
     2761 agaacgatta caagaaccaa atgatagtca gctgttgaca tatctctcgt atcgtaattg
     2821 gcactcgtca ttccacctat accaattttc gcattttcca gttttgttcc tttcatgcta
     2881 gctgagagtt gttcattaat gtcatcaatt gaatccatcg cttcattgga atatggattt
     2941 ttcgtcaaaa tcacattaat cgttgccagt tttccatcag aagagatgta ttgatctaat
     3001 actttttgga aatcagcatt ttttagtaga gcatccggta cataaattcc ggaacttgcg
     3061 taaggaactt ttgaccaatc atcaataagt ccgttcgctg tgtttagacc actttctact
     3121 ttgcctaggc cgtctgcgcc agaagttaag ccatctgtta attgacccat ttgaccgcta
     3181 atgcctgcaa agccatcttt tagggcacct tgtccagcag cgatttgcgt tagtgcatta
     3241 gagatttccg gcattttgga aacaacttgt ccttgaccat ctgcggcttg attgagacct
     3301 ttttctaatt gatcaagtcc tgtttcgatt tgaccaagtc ctgtactaaa agcgctaagt
     3361 ccatcagaga tttgtttgga ctgctcgttt aattgattca tcgctgttgc gagttgttga
     3421 ataccttgat ttagttcttt catttttgct tgaagtgctg ccatttgttg tccagcagag
     3481 gttttcagtt cgttaccagc tgtttctaag ccttgaatat ctgcggctag tttttggaaa
     3541 cgagggtcat ttctcacttc tggatgcgct gctgcgaacg cttggaaaga agcaccaatt
     3601 tttttgaatt gctcttcaag tttggaagta tcaattgctt gagagctagg gtcttcaaag
     3661 ccttttagtt ggtcagctac gttttgtagg tttttctgaa tttctacgta tcctgcttgg
     3721 atttgcgctt ctccattttg taacgtagct agttgtgatt tggcttctgc tacgccttgt
     3781 tttaaatcac cagcaccagt tgctccgctt tcaatgcctg tttggatttg tgcgagtgct
     3841 gtttgtagtt ggttaattcc ttcttgtgtt gcgacagtgc ctttttgtaa atcgctcact
     3901 cctgcaacag ctttatccaa ggcgggctcg gattttttga gttctgaact tgctgaatct
     3961 agtccttttt tcacttcccc tacgccatca gttgcttgac caacaccgtc atttacttgt
     4021 ccggcttggt ttttaatgta aatgtcatct acccgttttc cggctggacg tgaggcactc
     4081 ataaccatat cgatgccttt taaatgagat aaatcatcgg aaattttttc aatttgcgcg
     4141 atgtaatctg tagttcgcat attatcgtca ttttcgataa aaatttgtgt tggcgctact
     4201 tggcctgctc cgaaactgtc cgatacgatt tcaaaacctt ttttggaagg atatttgtca
     4261 ctaatttcgt ctaatgagtt aaatgattct gttcctgtat gcaataagat tggcggcaac
     4321 gtgatagctg caacgattaa taaagcaatc cacggtcttg caaaagtgaa tttaccagca
     4381 gcgccccaaa ttttattttc tttatggcta atatttttat ttaacggcca gaataaatgg
     4441 gttccgagtg tgctcataaa gaatggtacg agcgtgtaca gcgcggcaag taaaacgaca
     4501 atcccaacgc cgactgctac tgcggaacga tataaatcaa attgtacaaa atatagcgaa
     4561 gtaaatgcta cgagaacagc tacaccacta taaatgactg tttttcctgc tgtacgatac
     4621 gttgcatgaa cagcttctcg tggattgaga ccggcaccca tttcttcttt aaatcgactc
     4681 attaagagaa tacaatagtc tgtcccaatt ccgaacataa tacaaaccat aaagatttgc
     4741 gtgtatgtag agactgggaa attaaagata tcaattaaga atgctaccgt gctttgcgca
     4801 acgaggtaac taattcccac tgttacaagt ggaataaacg gtgccactgc tgagcggaat
     4861 acaaggaata atacaactaa aataaagaca acggtgatgc cttctgtttt atgtaaaccg
     4921 tcttcagatc cttgaactac atcttcttga attagtttat tacctgttaa atacgtatca
     4981 acacctttta catccatttt cttatctaat gcgttacgta tgcttttaac cgaggcatcc
     5041 gtatcatcta cggttaaact tgctaccatt gttttaccat cttttgataa gaacttatct
     5101 ttaagttctg gttggttaaa actagataac acgtttgtta catgaagttc gtctttatct
     5161 ttttcgatag agttgagtga atcctgaata tcgtttaatt ctgttccagt taacttatgg
     5221 tcggcagtat aaacagcgat gtaagctgaa cccttgtcat ctggattatg tttcttttgc
     5281 atttccgttg ctagtgatga cggatagcca tcaggcagct ttaattcgcc tttttcgcgt
     5341 acaagatctg ccatgggtgg tgcaataatc attagtacga ctgctgctgc aagccaaaat
     5401 gctaaaatgg cccagcggag tttcataatc catttcatgc caaatctctc cttttattgt
     5461 ctaggctcaa caaccgactt ggtaatcttt tgaaataatt caaaaaattg ttcgctgtcc
     5521 ttttccccta gtatttcgag ccattcattc acgagtaact ctaattgttt ttcgcattct
     5581 tcgtaaacgt tattcccttt ttctgagata gttaaaacta cggcgcgttt atcttgttgg
     5641 tttcgttctc gtctaatgta gcctttttct tctaattttt tcagtttagg tgtaatagcg
     5701 ctcttattta ctgctaaagt ggctgctagt tctgttgcgc taataccatc ataggtagca
     5761 atctcacgca aaacaaaaaa ctgctcaatg gaaaggtcta cagtacttgc tgaaatttct
     5821 gaaatagctt gatgtatttg attcatcgca aatatgtatg tttgttggta actttttatc
     5881 agttgtttta ctttttgtct ttccaaataa agttcacccc cttaactatt tttcagttta
     5941 agctttattt atttttaagt caaatgaaaa gaacttgccg ataaaaacaa gttcttttca
     6001 tcatcactca actgatttca gtgcttcaat catgtcgatt cgttttagtt taatgtgcat
     6061 gacaaccatt acaacagttg caaaaacgag ggtgagtatg ccggaaaata ggtagcttgt
     6121 ccaactaatt gccggactga acatcatttg gtctacctct gctgtggtga tgataaaccg
     6181 gtgcaagaag aatccaagga caaatccagc cgcaatgccc attaaggtta aaataatatt
     6241 ttcccggtag acatacatag tcacttcttt tggataaaac ccgagtactt tgatagtaga
     6301 aagttctcgt atccgttctg aaacattaat atttgtcagg ttgtaaagca cgacaaacgc
     6361 aagtaatgcc gcagacgtaa tgagtaccac gataacaata ttcagactat ccaaagttt
//
LOCUS       DASEAA010000149         6387 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.149, whole genome shotgun sequence.
ACCESSION   DASEAA010000149 DASEAA010000000
VERSION     DASEAA010000149.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6387)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6387)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6387
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.149"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(32..1243)
                     /locus_tag="U0342_002337"
     CDS             complement(32..1243)
                     /locus_tag="U0342_002337"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2423677.1"
                     /translation="MTTRTRNLYILMLANLLMSASMTMIMPFLSLYIETFGDYSNAYV
                     QRWAGYIFGVTFLIAFIFSPIWGRIGDKHGYKGILILTSVGLSICIFLMGFAHSVTYL
                     LILRIFMGVVTGFIGVSNAFIARQTPRNEAGKILGTLQLGGVTGMLFGPLIGGAMADL
                     FGFKDTFTITGIAMMVAALIVAFGVKEIRTEEQKEAAKVVYSRRAVLKQIFTLRVLFT
                     VMVITALIQIANFSVQPLLALYVGDMTQSDNIAFLSGLAFSATGFGNLVMTRKWGQLG
                     DKYGYEKILNILLIMAAVFVIPQAFATNLWVFIFFRFLFGIAIGGMVPCTTAYIRLAA
                     PGVMQGEMLGYNQSARFLGNVIGPILGGTLAGFTGIPSVFLFMSFMFLVAFFILLYAL
                     HSDRKRHVNVD"
     gene            1475..2059
                     /locus_tag="U0342_002338"
     CDS             1475..2059
                     /locus_tag="U0342_002338"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM2423678.1"
                     /translation="MTYPQLSKEVAPNEIEAEMITNRGTIRIKLFPEIAPKTVENFVT
                     HSKNGYYDGLIFHRVIPEFMIQGGDPDGRGTGGESIWGESFEDEFSTEAFNLRGALSM
                     ANAGPNTNGSQFFIVQKPDMPADMLGQMEQAGFPVEIIEAYKQGGTPWLDGRHTVFGH
                     VIEGMDVVDEIANLPTGMQDKPVNDVVIEKINIK"
     gene            2141..2536
                     /locus_tag="U0342_002339"
     CDS             2141..2536
                     /locus_tag="U0342_002339"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465898.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423679.1"
                     /translation="MEKSHPIKINNQLIYGRDKTWLESLHQNTNQLIITVEIDFEDES
                     TLQKMVFNGLIFYSSTELDTYEKSKWSSSWLQSQSNFEIIEQSNLINERVKIRSDYNI
                     QDFKHYRISTYDYIIDVIAKNYQLKEAHK"
     gene            complement(2578..3939)
                     /locus_tag="U0342_002340"
     CDS             complement(2578..3939)
                     /locus_tag="U0342_002340"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465897.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM2423680.1"
                     /translation="MKVIKFGGSSLASGIQLNKVFQLVAEDPDRKIVVVSAPGKRFKE
                     DTKVTDLLIDCAAKALLGEDTSELFESVIARYAGIALDTGMSDEIINQIRADLQATIS
                     SDKSDPDKFLDRMKASGEDNNAKLIAAYFKFKGLNANYINPKDAGLLVTDEHASAQVL
                     PESYDRLFALREREGIIVFPGFFGYTKDGEISTFSRSGSDITGAIVANGAQAELYENF
                     TDVDAVYAVNPAIVKNPKKVLELTYREMRELSYAGFSVFHDEALIPAFHAGIPVHIKN
                     TNNPDSCGTRVVHERENNNGPVVGIASDDGFCSIYISKYLMNREIGFGRKVLQILEDA
                     GLNYEHMPSGIDDLTIIIRENQFGEDTEQTIMSRLKEELNADQVIMQHGISLIMVVGE
                     TMRHNVGITSRASKALSDAKVNIEMINQGSSEVSIMFGVKEEQENTAVRALYNEFFSE
                     VFV"
     gene            4184..4498
                     /locus_tag="U0342_002341"
     CDS             4184..4498
                     /locus_tag="U0342_002341"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465896.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIB"
                     /protein_id="HEM2423681.1"
                     /translation="MKNIVLVCAAGMSTSLLVTKMRKAAEERGETCEIEAYSIAEVSN
                     LIDDADVVLLGPQVRYQKKTVDELAAGKIPVDVIDMAAYGTMNGEKVLGQALDLINGF
                     QK"
     gene            complement(4541..5221)
                     /locus_tag="U0342_002342"
     CDS             complement(4541..5221)
                     /locus_tag="U0342_002342"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465895.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423682.1"
                     /translation="METLLSFDKVYKDYPSGPSIIHALKETNFEAKKGELIAIVGPSG
                     SGKSTLLSLAGALLTPTGGTISINGKSVGNLSSKEQTALRLEEIGFIFQAAHLVPYLH
                     VKDQISFIGKMAGKSAAELEKDTASLLSQLGISDRANFYPKDLSGGQKQRVAIARALI
                     NQPSVILADEPTASLDTERSREVVELIRNEVVQTSRTAIMVTHDERMLDLVNHVYRME
                     DGILTQES"
     gene            complement(5221..6324)
                     /locus_tag="U0342_002343"
     CDS             complement(5221..6324)
                     /locus_tag="U0342_002343"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423683.1"
                     /translation="MFLGLRELVYSKLRYILVTGIMVLIMLLSLILSGLANGLAYDNA
                     SSVADNGVPYYVLSKDAQDKLSRSQFPESKLADVKKDANVKDAAVLGQSMQTLKRESD
                     DKKFSVALFGIQPDSFLAPKISDGANIQVTKPDEIVVDSSLKSDGIKIGDVLMDDILN
                     RELTVVGFTENQKYSHAPVVYINIATWQEINPVLYHQKIPQTSTIAIKTENPDKGVTL
                     SDKDLTTIDHKGFLNQIPGYSAEQMTLNMMIFFLIIIGGFILTAFFYVMTLQKTTQFG
                     ILKALGTKTSYLVKSIITQVVIISIISILISVGVTLILPSIMPAAMPFRLSPMTIALY
                     SGLFFLVALFGALLSLRRIAKVDALDAIRGGDE"
BASE COUNT         2081 a         1332 c         1156 g         1818 t
ORIGIN      
        1 aaacctaaga aaaaacttag gtttgtcaaa ttcaatccac gttcacatgc cgtttccggt
       61 cggaatgaag ggcataaagc aaaatgaaaa atgccacgag gaacataaaa ctcataaata
      121 agaacacact cggaattcct gtgaaaccag cgagcgtccc accgaggatt ggtccaataa
      181 catttcctaa aaagcgagca ctttgattat agccaagcat ttcgccttgc ataacaccag
      241 gcgccgcaag ccgaatataa gctgtcgtac atggcaccat accaccaatc gcaatcccga
      301 ataaaaagcg gaagaagata aacacccaaa gattcgtcgc gaatgcctgt ggaataacaa
      361 aaacagccgc cataatcaac aatatattta gtattttctc atacccatat ttgtctccaa
      421 gctgtcccca ttttcgcgtc atcaccaagt tcccgaatcc cgtcgcagaa aacgccagcc
      481 cggacaagaa agcaatattg tctgattgcg tcatatctcc tacataaagc gcaagcaacg
      541 gttgaacact aaagttcgca atttggataa gtgctgtaat aaccatcacc gtgaatagaa
      601 ctcgtagcgt aaaaatttgt tttaaaactg cacgacgaga ataaacgact ttggcagctt
      661 ctttttgttc ttctgtacga atttccttga caccaaaagc gacaattaaa gccgcaacca
      721 tcatcgcaat tccggtaatt gtaaaggtat ctttaaagcc aaataaatcc gccatcgcgc
      781 cgccaatcaa gggaccaaac agcatcccag tcacgcctcc gagttgcaaa gtaccgagaa
      841 tttttccagc ttcattacga ggagtttgcc gtgcaataaa ggcattacta acgccaataa
      901 agccagtcac aacccccatg aaaattcgta aaatcagtaa gtaagtgaca gaatgcgcaa
      961 atcccatcag aaaaatacaa atcgataaac caactgaagt cagaatcaaa atccctttat
     1021 aaccgtgctt atcaccaata cgtccccaaa tcggcgaaaa gataaaggca attaaaaatg
     1081 ttacgccaaa aatataaccg gcccaccttt gcacgtaagc attgctataa tcaccaaatg
     1141 tttcaatgta aagagataaa aaaggcataa tcattgtcat actggctgac atcaacaggt
     1201 ttgccagcat taagatgtac aaattccgtg ttcgagttgt cataaaagaa tcatctctat
     1261 tcgtattatt gttaaaactg tccttttcat tatagaataa aagatagcga atgaaaaata
     1321 aagtgaagga tgtgcatttt tggttaaaaa aattgtcatt tgggtttcag ctgttatact
     1381 agtactgtat ctgattgctg tcgttgttaa tttgcttatt atttggctac gttagtaaac
     1441 aataaattta aacaaaagaa ggagttttta caatatgact tacccacaat tatcaaaaga
     1501 agtggcacct aacgaaattg aagcagaaat gattacaaac cgaggaacta tccgcatcaa
     1561 attgttccct gaaattgcac caaaaacagt agaaaacttt gttacacatt ccaaaaacgg
     1621 ctactatgat ggccttattt tccaccgtgt tattcctgaa ttcatgatcc aaggtggcga
     1681 cccagacggc cgtggtactg gtggcgaaag tatttggggc gaatcttttg aagatgaatt
     1741 ctctacagaa gctttcaatt tacgcggagc tttatccatg gcaaacgctg gtccaaacac
     1801 aaacggcagt caattcttca tcgttcaaaa accagatatg cctgctgaca tgcttggtca
     1861 aatggaacaa gctggcttcc cagtagaaat tatcgaagct tacaaacaag gcggaacacc
     1921 atggttagac ggccgccaca cagttttcgg tcacgtaatc gaaggcatgg acgtagtaga
     1981 cgaaatcgcc aacctaccaa ctggcatgca agacaaacca gtgaatgatg ttgtgattga
     2041 gaagattaat attaaataac tatacttaga gcactttcat agaaagtgct cttttcgagt
     2101 gaacttttaa tagtaatttc agataggagt tgagaaatct gtggaaaaat cccacccaat
     2161 aaaaatcaac aaccaactaa tttacggcag agacaaaaca tggcttgaaa gcttacacca
     2221 aaacaccaac caacttataa taacggttga aattgatttt gaagatgaaa gcacgctcca
     2281 aaaaatggtt tttaacggac ttattttcta ttcatccacc gaactcgaca cctacgaaaa
     2341 aagtaaatgg agttctagtt ggttacaaag ccaaagcaat ttcgaaataa tcgagcagtc
     2401 aaatttaata aacgagcgag tgaaaataag aagtgactac aacatccaag atttcaagca
     2461 ttaccggatt agtacgtatg actacattat tgatgtaata gcaaaaaact atcaattaaa
     2521 ggaagctcat aaataaaaca agtttctcgt cagctaagat gagaaacttg ttttatttta
     2581 aacgaatact tctgaaaaga attcattata tagtgcgcga accgcagtat tttcctgctc
     2641 ttccttcacg ccaaacatta tgctcacctc agaagaacct tgattaatca tttcaatatt
     2701 tactttcgca tcggataaag cttttgaagc acgagacgta atcccgacat tatggcgcat
     2761 ggtctcacca acaaccataa tcagcgaaat cccgtgttgc ataatcactt gatctgcgtt
     2821 caattcttct ttcaaacgag acataattgt ctgctcggta tcttcgccaa actgattttc
     2881 gcgaataata atcgttaaat catcaatccc agacggcata tgttcatagt tcaacccagc
     2941 atcttccaga atttgcaaca ctttccgtcc gaagccgatc tctcggttca tcaaatattt
     3001 actaatataa atgctacaaa agccgtcatc actagcaatt ccaacgactg gaccattgtt
     3061 attttcgcgt tcatgaacga cacgcgtacc acaagaatca ggattgttcg tatttttaat
     3121 atgcaccgga atacctgcat ggaaagccgg aattaaagct tcatcatgaa aaacagagaa
     3181 gccggcatat gaaagttcac gcatttcccg gtaagttagt tcaagaactt tcttcggatt
     3241 tttcacgata gcgggattga ctgcgtagac tgcatccaca tccgtaaagt tctcgtataa
     3301 ctcggcttgg gcgccgtttg ccacaatcgc tccagtaata tcagagccac ttctagaaaa
     3361 cgtgctaatt tcgccgtctt tcgtataacc gaaaaatcct gggaaaacaa taatgccttc
     3421 tctttctcga agtgcaaaca aacgatcata ggattctggt aaaacttgcg cactagcatg
     3481 ttcatctgtc acaagtaaac cggcgtcttt tggattaata taattggcgt ttaagccttt
     3541 aaatttaaag taagcggcga ttaattttgc gttattatct tcgccactag ctttcattcg
     3601 atctaaaaat ttatcaggat cgcttttgtc cgatgagata gttgcttgta aatctgcgcg
     3661 aatttgattg ataatttcgt cgctcatccc tgtatctagc gctatccctg catatcttgc
     3721 aatgacagat tcaaacaatt cacttgtatc ttccccgaga agtgcctttg ccgcgcaatc
     3781 aataagtagg tcagtcactt ttgtatcttc cttgaaacgt ttacctggtg cagaaacaac
     3841 aacgattttc ctatcaggat cctccgctac aagttggaaa accttattta attggatccc
     3901 cgatgctaaa gagcttccgc caaatttaat tactttcatg caacacactc ctgatctgaa
     3961 ttttttagct tccgaaagcg ttgtttttgg atgatgcgaa attttctgac ctttcggata
     4021 aagttattgt ctattatcgc tctttttccg tgaaatcgca atgttttttc gtgtttttaa
     4081 ttattttctc tcgactccag tagtttactt gtttaaaaag ctaaaggtag ttataataag
     4141 agtgtacaaa aaaagcagcc ttaatctgaa aggaaagatt acgatgaaaa atattgtttt
     4201 agtatgtgcg gcagggatgt caacaagcct tttagtaaca aaaatgcgta aagcagcaga
     4261 agaacgcgga gaaacttgtg aaattgaagc gtactccatt gctgaagtaa gtaacttaat
     4321 tgacgatgca gatgttgtac ttttaggacc acaagtgcgt taccagaaaa aaacagttga
     4381 tgaactagct gctgggaaaa ttccagtaga tgtaatcgac atggcagctt acggtacgat
     4441 gaacggtgaa aaagtactag gtcaagcatt agacttaatc aacggtttcc aaaaataaac
     4501 aataaaaaaa cctgtgtggc acttaagcca cgcaggtttt ttagctttct tgggtaagta
     4561 ttccgtcttc catacgatac acatggttga ctaaatctag catacgctca tcatgtgtta
     4621 ccatgattgc tgttcggctt gtttgcacaa cttcattccg tataagctcg acaacttcac
     4681 gacttctttc agtatcaaga ctcgcagttg gttcgtcggc taaaataacg gaaggttggt
     4741 tgataagagc acgagcaata gcgacacgtt gcttttgacc gccagataaa tcttttggat
     4801 agaaatttgc gcgatcacta atgccaagtt ggcttagaag tgaagctgta tctttttcaa
     4861 gctccgccgc acttttccca gccatttttc caataaagct gatttgatct tttacgtgta
     4921 aataaggaac taagtgagct gcttggaaaa taaagccaat ttcttctaaa cgaagagcag
     4981 tttgttcttt ggaagataaa ttcccgactg attttccgtt aatagaaatc gttccgccag
     5041 tcggtgttaa tagcgctccg gcaagagaaa gcagtgtact tttaccagaa ccactcggac
     5101 caacaatcgc gattagttca ccttttttag cttcaaagtt tgtttccttc agtgcatgaa
     5161 taattgaagg accggacggg tagtctttat acactttatc aaaagatagt agagtttcca
     5221 ttattcatca cctcctcgaa tggcatctaa cgcatctact ttagcaattc gtctaagtga
     5281 tagaagggcg ccgaatagag caactaagaa gaacaaacca ctataaagcg caatcgtcat
     5341 cggacttaat ctaaatggca tcgctgctgg catgatactt ggtaaaatca gcgttacacc
     5401 gacactaatt aaaatactaa taatcgaaat aatcaccact tgagtaataa tgctcttaac
     5461 taagtaactt gttttcgttc caagtgcttt caaaatacca aattgcgttg ttttttgaag
     5521 cgtcataaca tagaagaatg cggttaaaat aaatccgcca ataatgatta agaagaaaat
     5581 catcatatta agcgtcattt gttccgcgga ataacctgga atttgattta agaaaccttt
     5641 atgatcaatc gttgttaaat ctttatccga aagggttacg cctttatcag gattttctgt
     5701 tttaatcgca atagtacttg tttgcgggat tttttggtga tataaaacag gattgatttc
     5761 ttgccaagtc gcgatattaa tataaacaac gggagcatgg ctatattttt gattttccgt
     5821 aaagccgaca accgttaatt ctctattcaa aatatcatcc atcaaaacat cgccaatttt
     5881 gattccgtct gatttcaagg aagaatcaac gacgatttcg tcaggttttg tcacttgtat
     5941 gttagctcca tcagaaattt ttggagcgag aaagctatct ggttgaatac cgaaaagtgc
     6001 gacgctaaac tttttatcgt cactttcccg ttttaacgtt tgcatagatt gaccgagaac
     6061 cgcagcatct tttacattcg catctttttt cacatcagcg agtttggatt ctgggaactg
     6121 agatcgagat aatttgtctt gggcgtcttt gctgagaaca taatatggaa ccccgttatc
     6181 tgctacagat gaagcattat cgtaagccag cccgtttgcc aaccctgata aaataagtga
     6241 tagtaacata attaagacca tgatgcctgt tactaaaata tagcgcaact tagaataaac
     6301 taattcacga agccctaaaa acatcgatta taccaactcc tttaaattta tgtaaacgga
     6361 aaatgaacac tatttcactt tccaaag
//
LOCUS       DASEAA010000150         6316 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.150, whole genome shotgun sequence.
ACCESSION   DASEAA010000150 DASEAA010000000
VERSION     DASEAA010000150.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6316)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6316)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6316
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.150"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1208
                     /gene="hpt"
                     /locus_tag="U0342_002344"
     CDS             <1..1208
                     /gene="hpt"
                     /locus_tag="U0342_002344"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hexose phosphate transporter Hpt"
                     /protein_id="HEM2423684.1"
                     /translation="STTELGMIGLAFSVMYGIGKTILGYAVDGRNAKKIMSFLLGISA
                     IISIIIGILLVTKQATVGILFILWGANGFVQSPGGPASYSTITRWTPKLKRGRWLGFW
                     NASHNIGGALAGIVAFWGATTFFNGGAGGMFIVPGIIAIIIAIICFSVGHDEPEELGW
                     NSAAEIFEEREEQGESETKDLSRFQILCRFVINNPWVWTLCVINIFIYIVRIGIDNWA
                     PVYCIQALGWSTKDAIMTISFFEIGALLGSLSWGWLSDIMKGRRMLCSIIAVVIEFFM
                     LISYSQVTSVYSMYTVLFILGFLVFGPQLLIGVSVIEFVPRNALAVTNGLTGTFAYLF
                     GDSFAKVFLGYIADPTKAGIQIFGYTLHGWGATFTIMFTALIIAGLMMIPVALKQEKI
                     IRQAKVLHL"
     gene            complement(1316..2527)
                     /locus_tag="U0342_002345"
     CDS             complement(1316..2527)
                     /locus_tag="U0342_002345"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetracycline resistance MFS efflux pump"
                     /protein_id="HEM2423685.1"
                     /translation="MSSTKSIINKKTLLFGLISVFLCGMGFSIIMPVVPFLVTPYVTN
                     ASDQALMVTLLTSVYALCVFFAAPGLGALSDRFGRRPVLLICFIGSAIGYFIFGLGGA
                     LWVLFLGRIFEGITGGSISTLFAFFADITPQEERTKYFGWVSAAAGAGAALGPAFGGL
                     LAHFGYAMPFFFGAAITFINFLFGYFYMPESLEEANRLKRIPLMRLNPFSQLLKILTI
                     KNLGRLLIAAFFIWVPNGSLQAVMSQFAIDSFSWKPVLIGMMFSIMGIQDILSQAFVM
                     PKLLLKLTDKQIAILGMIAEIIGYLLIAASSIFTLAPLLVIGMFVFGFGDSIFGPSFN
                     GMVSKSASASEQGRIQGGSQAIQSVARIIGPVIGGQLYITLGHAAPAIMGVLLITVAI
                     FILYKKTSLAK"
     gene            complement(2657..3127)
                     /locus_tag="U0342_002346"
     CDS             complement(2657..3127)
                     /locus_tag="U0342_002346"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464366.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2423686.1"
                     /translation="MDKNEQVMANVRDLFNKLAWINKVKMEKALEGYKPSEVHCIEYI
                     AKNEDPNVTKLAEAFYMTKSAISKITKKLMDKGYIESYQKPENKKEIYFRLTAKGAEI
                     NQVHDDLHQEFLDRDKVVFEDVTDAQYAEVLKFVDKYSRHLDNEMQKVYNQKSE"
     gene            3329..5971
                     /locus_tag="U0342_002347"
     CDS             3329..5971
                     /locus_tag="U0342_002347"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464367.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="calcium-transporting ATPase"
                     /protein_id="HEM2423687.1"
                     /translation="MEIYRKSAAETFTQLEATEQGLTTSEVTKRQEKYGFNELKNKKK
                     DPLWKLFLETFKDPMVIVLVVAALVQLVLGEVVESLIIFLVLIVNSIISVVQTRKAES
                     SLDALREMSAPVAKVIRDGSKQSIHARELVPGDVVILDAGDFVPADGRLFESGSLKID
                     EGMLTGESEAVEKYIDTIPDEVGLGDRVNMVFSGSLVVYGRGMFVVTGTASETEIGKI
                     AGLLETAEAKQTPLQRKLESFSKKLGLGILALCVLIFAVEAGRVLLGDNSADMATAIL
                     NAFMFAVAVAVAAIPEALSSIVTIVLAVGTNKMAKQHAIIRKLPAVETLGSTSVICTD
                     KTGTLTQNKMTVVDYYLPDGTKENFPESPENWSEGERRLIHIAVLCNDSNINSEGKEL
                     GDPTEVALIAFSNKNNQDYNEIREKFIREGEIPFDSDRKLMSTLHTFNGNKAMLTKGG
                     PDVMFARCSYVFLDGEEKPMTEEILAKLKETNEEFSNQALRVLAYGYKRMPADTTELK
                     LEDEQDIVLVGLTAMIDPPREAVYASIEESKKAGIRTVMITGDHKTTAQAIGRDIGLM
                     DADDIALTGQELDAMPEEELDKKLEHIAVYARVSPENKIRIVKAWQKKGKITAMTGDG
                     VNDAPALKQADIGVAMGSGTDVAKDSAAMILTDDNFVSIVDAVGVGRTVFDNIKKSIA
                     YLFAGNLGAIIAILFALVLDWINPFTALQLLFINLVNDSLPAIALGMEKAEPDVMKRK
                     PRDINEGIFAGGTMRAVISRGVLIGIAVIISQYIGLQISPGMSVAMAFTTLILARTLQ
                     TFAARSNVQTAFGAGFFSNKYVIGAVLLCFVLYGITVLPGAREIFSIPASFGLHEWSI
                     AAGLALAAVVMMEIIKLVQNKFFK"
BASE COUNT         1980 a         1164 c         1335 g         1837 t
ORIGIN      
        1 tcagcaccac agaactagga atgattggtt tagctttttc tgttatgtac ggaattggaa
       61 aaacgatttt agggtatgcc gtggatggaa gaaatgctaa aaaaataatg agttttttat
      121 tagggatttc cgccattata tcaattatta ttggaatact tttagttaca aagcaagcaa
      181 cagtgggtat attgtttatc ctttggggag caaatggatt tgtgcaatca ccaggtggac
      241 cggcttccta ttcaactatc acacgatgga cgccaaaatt gaaaagagga agatggttag
      301 gtttttggaa tgcctcgcat aatataggtg gtgctttagc gggaattgtt gctttttggg
      361 gtgcgactac tttctttaat ggcggggcag ggggaatgtt tatcgttccg ggtatcattg
      421 cgatcatcat tgcaattatt tgcttctccg tggggcatga tgaaccagaa gaattaggat
      481 ggaactctgc cgctgaaatt tttgaagagc gggaagaaca aggagaatcg gagacaaaag
      541 acctttctag atttcaaatt ttgtgtcgat ttgttattaa taatccttgg gtatggactt
      601 tatgtgtcat aaatatattc atctatattg ttagaattgg tattgataat tgggcgcccg
      661 tttattgtat tcaagcgcta ggatggagca caaaagatgc aattatgact atttcttttt
      721 ttgaaattgg agcattgcta ggttcattat cgtggggctg gctctcagat attatgaaag
      781 gccgccgtat gctttgctcg attattgcag ttgtcattga atttttcatg ttaattagtt
      841 attcgcaagt tacaagtgtt tatagcatgt atacggtatt atttatttta ggattcttag
      901 tatttggccc ccaactttta attggtgtgt cggtgatcga gtttgttcct agaaatgctt
      961 tagctgtaac aaatggctta actggaacgt ttgcatactt attcggagat tcttttgcta
     1021 aagtctttct aggatatatc gcagacccaa caaaagcggg tatacaaata tttggctata
     1081 ctttacacgg ctggggcgca acttttacca ttatgtttac agctttaatt attgcaggct
     1141 taatgatgat tccagttgca ttaaaacaag agaaaatcat ccgacaagca aaagttttac
     1201 atctataagt tgaaaagtaa tgagtgaaga taaactaatt actaaaaagg tatcctaatt
     1261 aatagtataa ggataccttt ttcattgcaa aatggtttgt taaatacgaa aaaaattatt
     1321 ttgctaaaga agtcttttta taaagaataa aaattgcaac agtgattaaa aggacaccca
     1381 taatagcagg agcggcatgg ccaagcgtaa tataaagttg cccaccgata acgggtccga
     1441 taatacgcgc caccgactga atggcttggc tacctccttg aatccgacct tgttcgctag
     1501 cgctagcaga ttttgaaacc atgccgttaa acgaaggtcc gaaaatcgag tcgccaaaac
     1561 cgaaaacgaa cattccgata acaagtagcg gtgcaagtgt gaaaatcgag gaagctgcaa
     1621 taagcaaata gccaataatc tcagcaatca tccccaaaat agctatttgt ttgtccgtta
     1681 acttgagtag taattttggc ataacaaaag cttgcgacaa gatatcttga attcccataa
     1741 tggaaaacat catcccaatt aaaactggct tccaactgaa actatcaatg gcgaattgag
     1801 acatgacagc ttgcaaggaa ccattaggaa cccaaatgaa aaatgcagca atcagtaaac
     1861 gtcctaagtt tttgatggtc agaattttaa gcagctggga aaacggattg agtcgcataa
     1921 gcggaattcg ttttaaacga tttgcttctt ctaaactctc aggcatgtag aaataaccga
     1981 ataaaaagtt gatgaaagta atcgctgctc caaagaaaaa tggcattgcg taaccaaagt
     2041 gggcaagcaa tccaccgaaa gccggaccaa gcgcagcacc cgcaccagct gcagcgctaa
     2101 cccaaccaaa gtatttcgtc cgctcctctt gaggcgtaat atcagcaaag aaagcaaata
     2161 gtgtacttat gctaccacca gtgattcctt caaaaattcg accaagaaag agcacccaaa
     2221 gcgccccacc aagaccgaaa ataaagtaac caatcgcaga gccgataaaa caaatgagta
     2281 acactggtcg tctgccaaat ctgtcactta aagcaccaag accaggcgca gcaaagaaca
     2341 cgcaaagcgc ataaacagat gtgagcagtg tcaccataag cgcttgatca ctagcatttg
     2401 ttacgtaagg tgttacgaga aacgggacaa cgggcataat aatactaaaa cccatcccac
     2461 aaaggaagac agatataaga ccgaaaagta aagttttctt attaataata gatttagttg
     2521 aagacatgta atactcctat cgattgtaat tagtgtccta ggaaacataa ttagcttaac
     2581 tcgtttttgt ttccttgtca acaaaaataa aacaataaaa aacaacctaa cttgaaaaat
     2641 taggctgtta ctaggtttat tcggattttt gattgtaaac tttctgcatt tcattatcta
     2701 aatgacgact atatttatcc acaaatttta acacttccgc atattgtgca tccgttacgt
     2761 cttcgaaaac taccttgtca cgatcgagga attcttgatg caaatcatcg tggacttggt
     2821 taatttcagc gcctttagct gttagacgga aataaatttc tttcttattc tccggttttt
     2881 gataactttc aatatagcct ttatccatca gcttttttgt aattttgcta atcgcgctct
     2941 ttgtcatata gaaggcttcc gcgagtttcg ttacattagg atcttcattt ttggcaatgt
     3001 attcgatgca gtggacttca gaaggtttat atccctctag cgctttttcc atcttcactt
     3061 tattaatcca agcgagctta ttaaataaat ctctgacgtt cgccatgact tgttcatttt
     3121 tatccatgcc atgccctcct actctatctg cttgtagtat agctgttttt tgtgtccggt
     3181 tcaactattt attgcctttc gtagctaaaa ggggaacttg aaagcgctgt ttgttaagag
     3241 tgtgtaaatt tccagtgtta tcaatattat ttcactgtta agatttgtta tacttaacac
     3301 ataaactgtt tggaaggggc tgacatgatt ggagatatac cgcaaaagcg cggcagaaac
     3361 atttacacaa ctagaagcaa cagaacaagg cttaacaact agtgaggtaa caaaacgaca
     3421 agaaaaatac ggttttaacg aactgaagaa taaaaagaaa gatccacttt ggaaactttt
     3481 cctggaaaca tttaaagatc caatggttat tgttttagtc gttgctgcct tagtgcagtt
     3541 ggttttaggc gaagtggttg aatcgcttat tatcttttta gtacttattg tcaactcgat
     3601 tattagcgta gttcagacga ggaaagcaga aagttcgctt gatgcattac gagaaatgtc
     3661 tgcgccggtt gccaaagtaa ttcgtgatgg ctctaagcaa agtattcatg cgcgcgaact
     3721 tgttccgggt gacgtcgtta ttttggatgc tggtgatttc gtcccagcag acggccgttt
     3781 gttcgaaagc ggctctttaa aaatcgacga agggatgctt accggtgaat cggaagcggt
     3841 cgagaaatat attgatacca ttccagatga agtggggctt ggcgaccgtg tgaatatggt
     3901 tttcagcggt tccctcgttg tatatggtcg tgggatgttt gttgtaacag gcacagcgag
     3961 cgaaacagaa atcggaaaaa tcgccggact tcttgaaaca gcagaagcaa aacaaacacc
     4021 actacaaaga aaactagaat cattcagtaa aaagctagga ctcggtattt tagctctctg
     4081 tgtacttatt tttgcagttg aagctggtcg cgtattactc ggcgacaatt cagcggatat
     4141 ggcaacggcg attttaaatg cctttatgtt tgccgtggcc gtagctgtag cagcgattcc
     4201 ggaagcactt tcttctattg taacgattgt acttgcagtt ggaacaaaca aaatggcaaa
     4261 gcagcacgcg attattagaa agctcccagc agttgaaaca cttggctcca caagcgttat
     4321 ttgtacagac aaaaccggaa cgttaacgca aaataaaatg acggtcgtcg attactattt
     4381 acccgatggc acaaaagaaa atttcccgga aagtccagaa aattggtcag aaggggaacg
     4441 ccgtttgatt catattgcgg tactttgtaa cgattcaaat attaacagtg agggcaagga
     4501 gttaggcgac ccgaccgaag tggcgctaat tgcctttagt aataaaaata atcaagatta
     4561 caatgaaatt cgcgaaaaat tcattcgtga aggcgaaatt ccctttgatt cagatcgtaa
     4621 gttaatgtct acgcttcata cctttaatgg aaacaaggca atgctaacaa aaggcggacc
     4681 agacgtgatg ttcgcgcgtt gcagttatgt tttccttgat ggggaagaaa agccaatgac
     4741 agaagaaatt ttagcgaaat taaaagaaac aaatgaagaa ttttcgaatc aggcgctccg
     4801 ggtccttgct tacggctaca aacggatgcc tgctgataca actgaattaa aattagaaga
     4861 tgagcaagat atcgttctag ttggcttaac tgcaatgatt gatccgccac gtgaagccgt
     4921 gtatgcatcg attgaagagt ccaaaaaagc tggcattcgt acagtcatga tcaccggtga
     4981 ccataaaaca acggcacaag caatcggccg tgacattggt ttaatggatg ccgatgatat
     5041 cgcattaaca ggccaagaac tagacgcaat gccagaagaa gaactcgaca aaaaactaga
     5101 acatatcgca gtctacgccc gagtttcacc agaaaataaa atccgtatcg tcaaagcttg
     5161 gcagaaaaaa ggcaaaatca cagcaatgac tggcgacggt gtcaatgatg cacccgcttt
     5221 aaaacaagcc gatattggtg tcgcaatggg tagcggaacc gacgttgcga aagactctgc
     5281 cgcgatgatt ctgaccgatg ataatttcgt ttcgattgtg gatgcggttg gcgttggtag
     5341 aaccgttttt gacaatatta agaaatcaat tgcttatcta tttgcaggaa acctaggtgc
     5401 gattattgcg attttattcg cgctagtgct ggactggatt aacccgttca ctgcgttaca
     5461 attactattt atcaacttag tcaatgactc cttaccagca atcgcactag gtatggaaaa
     5521 agcagaacct gacgtaatga aacgcaaacc gagagatatt aacgaaggca tttttgctgg
     5581 tggaacgatg cgcgccgtta tcagccgcgg tgtattaatc ggtatcgctg ttatcatctc
     5641 acaatatatc gggttgcaaa tttcaccagg gatgagtgtt gcaatggcat ttactacgct
     5701 tatcctagca cgtacattac aaacatttgc agctcgctcg aatgtccaaa ccgcatttgg
     5761 cgcaggattc ttcagtaaca aatacgtaat cggtgcggta ttactttgtt tcgtcctata
     5821 cggaattaca gtattaccag gagctcgaga aattttctca atcccagcat catttggcct
     5881 acatgaatgg tcgatagcag cggggctagc acttgcagca gttgtgatga tggagattat
     5941 taaattagtt cagaataagt ttttcaaata aattatataa acacagaaat cactcgtttg
     6001 gcggaggatt tctgtgtttt ttctttctat ccaaaataac ttatgagaat gataagtagt
     6061 cattgcgcag gtgaaaatta ataattagtt gttttattgg aaaaagtact aaaaaggtaa
     6121 aaaaacgatg agatgaattg tgtatgtggt gaattttatt ggtgaatggc tctgtaaaag
     6181 ggaagtggag aatcttttaa aaattactaa cgattcttca tttgttaaat atgtcggaat
     6241 tgtgtcggaa accgcttttt tatatgacga acttttgtat aaaattctta tattcattct
     6301 ttattttaaa aactca
//
LOCUS       DASEAA010000151         6257 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.151, whole genome shotgun sequence.
ACCESSION   DASEAA010000151 DASEAA010000000
VERSION     DASEAA010000151.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6257)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6257)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6257
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.151"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1405)
                     /gene="gtfA"
                     /locus_tag="U0342_002348"
     CDS             complement(<1..1405)
                     /gene="gtfA"
                     /locus_tag="U0342_002348"
                     /EC_number="2.4.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601614.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sucrose phosphorylase"
                     /protein_id="HEM2423688.1"
                     /translation="MQIKNKAMLITYSDSLGKNMEELSKVMETYFEDAVGGIHLLPFF
                     PSTGDRGFAPSDYTTVDSDLGSWEIIEKLGEKYYLMFDFMINHISRESLFFQDFKKEH
                     LNSKYKDMFIRINDFFPPGRPNEKDLDLIYKRKDKAPFQEVEFADGGTELVWNTFGEE
                     QIDLDVTAEVTKEFIRQTIKNMAAHGCSILRLDAFAYAIKKLDTNDFFVEPEIWGLLD
                     EVKAEAAKYDMELLPEIHEHYSIQMKIANHDYYIYDFALPMVMLYSLYSGRVERLAKW
                     LEMSPMKQFTTLDTHDGIGVVDARDLLTDEELDYTSAELYKIGANVKKIYSSEKYNNL
                     DIYQINSTYYSALGDDDKSYLLARVIQCFAPGIPQIYYVGLLAGKNDIDLLEETKEGR
                     NINRHYYTIDEIKNEVKRPVVKALCNLLRFRNTSEAFDLEGSIEIETPSSNEIVIIRK
                     NKTNKITAILKANLSTKT"
     gene            complement(1406..3103)
                     /locus_tag="U0342_002349"
     CDS             complement(1406..3103)
                     /locus_tag="U0342_002349"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha-glucosidase"
                     /protein_id="HEM2423689.1"
                     /translation="MEITETKEWWKESVVYQIYPRSFQDSNGDGIGDIRGIIERLPYL
                     KDLGINVIWLCPVYKSPMDDGGYDISDYYEIDPMFGTMSDMDELIEKAEKLGIKILMD
                     LVVNHTSDEHEWFEKAIADPKSKYRDYYIFREGVNGNPPNNWRSYFGGSAWEAVPGEE
                     NMFYLHAFSKKQPDLNWENIVVRNECIQMINWWLEKGLGGFRIDAILNLKKRIEYGTF
                     PADGEDGLVFIGHWILNQPGIEEWLKEIDERTFKKHNAFTVAEADVPEERLSEFIGEN
                     GHFRMVFDFSYTDIDTPETGEWFKNSEWTVKELKEKIITNELVTQRNGWGAKYLENHD
                     QPRSINKYLPQEYQDDRSKKMLGTLFMMLHGTPFIYQGQEIGMSNTRMESIDDYNDIA
                     THDQYHRAILSGMSPEEALEGMYRRSRDNSRTPMQWNNQKNAGFSDSDEIWLKANPNY
                     LDINVEQEQIDDNSVLNFYKKLIHLRSDSSKYKEVAVYGELLPVESSDEVIAYKRKTD
                     DAELLIIVNFSDSENQLCIEGTYEQVLANVALPEMVENVLEIPAYTGAVFSRVLEVD"
     gene            complement(3118..3948)
                     /locus_tag="U0342_002350"
     CDS             complement(3118..3948)
                     /locus_tag="U0342_002350"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2423690.1"
                     /translation="MKRATVWPNLLLIVLGCIWIFPIIWIVLTAFRAESGQFVSYIFP
                     KEYTLDHFAYLFENHENFPFMLWVKNTMIVAVCSCLLSTFITVSMAYVLSRLRFRFKK
                     TMLKTALVLNMFPAFMSMIAVYYILKAFGLTQSLTALVLIYSSTAALTFYIAKGFFDT
                     IPKSLDESAMMDGATKLSIFTKITLPMSKPIIVYTALMAFMLPWMDFIFAKVIMGDNV
                     PKYTVSIGLYSMLNQTTANTMYTTFAAGCILIAVPITILFIYLQKYYVEGITSGAVKG
                     "
     gene            complement(3950..5287)
                     /locus_tag="U0342_002351"
     CDS             complement(3950..5287)
                     /locus_tag="U0342_002351"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601612.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2423691.1"
                     /translation="MMVKKNYFNIFKNGSVSTRLSYVIMGAGNLAHKQIAKGLLFLFS
                     ELAFLFFLVFYGITLIQGMATLGTVNQSWNFDKSLGIMVRTPGDNSMLMLIYGIMTVV
                     ICVLFLFLYLANIRSACQVEGFQRENKKIPTFKEDLKSLLDNKFHVTLLTIPMIGVVV
                     FTIMPLVYMISLAFTNYDHEHLPPRNLFGWVGFVNFKNVLNGDISSTFFPVLGWTLIW
                     ALLATATCFFFGVLLALLINHKGVKFKKFWRTIFVITMAVPPFVSLLVMQNLLHAAGP
                     LNTMLLNWGIIAEPIPFLTDALLAKVSVIFVNMWIGIPVTMLIATGILMNLPKDQLEA
                     ARMDGGNSFHLFRYITFPQILTVMLPSLIQQFIGNINNFNVIYLLTGGGPSNSNFYGA
                     GDTDLLVTWLYKLTVEAADYNLASVIGIVTFILSAAFSLFAYTRTNSYKEGSN"
     gene            complement(5305..>6257)
                     /locus_tag="U0342_002352"
     CDS             complement(5305..>6257)
                     /locus_tag="U0342_002352"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="extracellular solute-binding protein"
                     /protein_id="HEM2423692.1"
                     /translation="VFITPNDRLGQLVESGAVYQLTKYTDDIKKNNTPTSIQAATYQD
                     KMYGFPVTAEAMFMYYDKRVFSEDDIKTFSGITSKGKLGINLAEAGADYRETPWFIAN
                     GTYLYGENGEDPYGTTFNTPEGVQVLNWIGELKNNPNVVAVNADEISALRSGKINAVF
                     SGVWNKDAIREVLGENMGVAVYPKADFGSGQVDMMAFQGSGIYCVNAFTKSPLDAMEL
                     ADYITNADVQEKAFKELGKIPSNLEARTSSTVEKDDVAKAVIDMTSGKHSVLMPKIPE
                     MNVFWQHMNPLLVDTYKGKIKKEDYPEALDKLVKDITPAK"
BASE COUNT         1985 a         1362 c          897 g         2013 t
ORIGIN      
        1 atgttttagt acttaaattc gcttttaata tcgctgtaat tttatttgtt ttgtttttgc
       61 gaataataac gatttcattt gagctaggtg tctcaatttc tatacttcct tccaaatcaa
      121 atgcttcaga agtatttcta aatctcagta aattgcacaa cgctttaaca actggtcttt
      181 ttacttcatt tttaatttca tctattgtgt agtaatgacg attaatatta cgaccttctt
      241 tcgtttcttc taaaaggtca atatcatttt tgccagcaag taaaccaaca taataaattt
      301 gcggaatccc cggcgcaaaa cattgaatta ctcttgccaa caagtaactt ttgtcatcgt
      361 cacccaaagc actataatag gtactattaa tttgataaat atccagatta ttatattttt
      421 cagaggaata tatcttttta acattagctc ctattttgta taattctgct gaagtataat
      481 cgagttcctc atctgttaat aaatcgcgtg catccacaac gccaatgcca tcatgcgtat
      541 ctaaagtagt aaattgcttc atcggactca tttctaacca tttagctaaa cgttccactc
      601 ggccactata taacgagtac agcatcacca tgggtaacgc aaaatcatag atataataat
      661 catggttcgc gattttcatt tggatggaat aatgttcatg aatttctggt aataattcca
      721 tatcatattt ggccgcttct gctttcactt catccagtaa accccaaatt tccggttcta
      781 caaaaaaatc atttgtatct aattttttaa ttgcataagc aaaggcgtca agacgcaaaa
      841 tagaacaacc atgtgcagcc atatttttta tcgtttgacg aataaattct tttgtaactt
      901 cggctgtcac atctaaatca atttgttctt ccccaaaagt attccaaact aattccgttc
      961 ccccatcagc aaattcaact tcttgaaaag gcgccttatc ttttctctta taaattaaat
     1021 ctaagtcttt ttcatttggt ctacccggag gaaagaaatc attgatacga ataaacatat
     1081 ctttatactt tgagtttaaa tgctcttttt taaaatcttg aaagaagagt gattcgcgag
     1141 aaatgtgatt aatcataaaa tcaaacatta aataatactt ttcgcctaat ttctcgatta
     1201 tttcccaaga acctaggtcg ctatctactg ttgtgtaatc acttggcgca aaccctcgat
     1261 ctccagtgga tggaaagaac ggcaataagt gaatcccgcc aacagcatct tcaaaataag
     1321 tttccatcac cttggataat tcttccatat ttttccctaa actatcagaa taagtaatta
     1381 acatagcttt atttttaatt tgcaatcagt ctacctccaa aacccttgag aagacggcac
     1441 ctgtatatgc aggtatttca aggacatttt ctaccatttc tggcaacgct acattagcaa
     1501 gtacctgttc ataagtacct tcaatgcata attgattttc agaatcagaa aaattcacga
     1561 tgattaagag ctcagcgtca tctgttttac gtttgtaagc aataacttca tcacttgatt
     1621 ctactggcag taattctcca taaacagcca cttctttata tttactagaa tcacttctta
     1681 aatggattaa tttcttataa aaattcaata cggaattatc atcgatttgt tcctgctcta
     1741 cgttaatatc aaggtaatta gggtttgctt tcaaccaaat ttcatctgag tcggaaaaac
     1801 cagcgttctt ttgattattc cattgcatcg gtgttcttga attatcccta ctacgccgat
     1861 acattccttc aagcgcttct tccggactca ttccagagag aattgcgcga tggtattgat
     1921 cgtgcgtcgc aatatcgtta taatcatcta tactttccat ccgagtatta ctcataccaa
     1981 tctcttgtcc ttgataaatg aacggcgtac cgtgcaacat cataaataac gtgcctagca
     2041 tttttttgct acgatcatct tggtattctt gaggtaaata cttatttatc gaacgcggtt
     2101 gatcatgatt ttctaagtat tttgcccccc aaccatttcg ctgtgtcacc agttcattgg
     2161 taattatttt ctcttttaat tcttttactg tccattctga attcttgaac cattcgcctg
     2221 tttcaggagt atcaatatct gtatagctaa aatcaaacac catacggaaa tgaccatttt
     2281 cacctataaa ttcagaaagt ctttcttcag gcacatccgc ctcagccaca gtaaatgcat
     2341 tatgtttttt aaatgtccgt tcgtcaatct ccttgagcca ctcttcaatt cccggctgat
     2401 ttaaaatcca atgaccgatg aaaaccaagc catcttcccc gtccgctggg aaagtaccgt
     2461 actcaattct tttcttcaaa tttaaaatgg catcaattct aaagccacct aaaccttttt
     2521 caagccacca gttaatcatt tggatacatt cattacgcac tacaatgttt tcccagttta
     2581 aatctggctg ttttttagaa aaagcatgta ggtaaaacat gttttcctca cctggtacgg
     2641 cttcccacgc agatccccca aaataagaac gccaattatt aggcgggttt ccatttacac
     2701 cctctcggaa aatataataa tctcgatatt tactttttgg gtcagctatt gctttttcaa
     2761 accattcatg ttcatcagat gtatggttta ccaccaaatc catcaatatt tttattccta
     2821 atttttctgc cttctcaatt aattcatcca tatcactcat cgttccaaac attggatcaa
     2881 tctcatagta atcagaaatg tcataaccac catcatccat aggtgattta tagacaggac
     2941 aaagccaaat cacattaata cctaaatctt tcaaataagg aagtcgttct ataattcctc
     3001 taatatctcc aataccatcc ccatttgaat cttgaaaact acgcggatag atttggtaca
     3061 ctaccgattc tttccaccat tctttcgttt ctgttatttc cactattaat ctatctccta
     3121 tcctttaaca gcaccacttg taatgccttc aacataatat ttttgcaaat aaataaacag
     3181 tattgtaatt ggtaccgcaa tcaatataca gccagccgca aacgttgtat acattgtatt
     3241 tgccgttgtt tgattcaaca tggaatataa acctatcgac actgtatatt taggcacatt
     3301 gtctcccata atcactttag caaaaataaa atccatccaa ggcaacataa atgccattaa
     3361 agctgtgtat acaataatag gcttagacat tggtaaagtt atttttgtaa agatacttaa
     3421 tttcgtcgcc ccgtccatca ttgccgattc gtccaaagat tttggtattg tatcaaaaaa
     3481 tccttttgca atataaaaag ttaatgcagc tgtagatgaa taaattaaca caagcgccgt
     3541 tagagattgc gttaatccaa atgctttcaa aatatagtaa actgctatca tgctcataaa
     3601 agcaggaaac atatttaaaa ctagcgctgt ttttaacatc gtctttttaa atctaaagcg
     3661 aagtctagat aacacataag ccatcgaaac ggttataaaa gtgctcaata aacaggaaca
     3721 caccgcaaca atcattgtat ttttaaccca taacataaaa ggaaaatttt catgattttc
     3781 aaataggtac gcaaaatgat ctagcgtata ttctttcgga aagatatacg aaacaaattg
     3841 tccactttcc gctctaaaag ctgtcaaaac aatccagata atcgggaata tccagataca
     3901 cccgagcact atcaacaata gattaggcca tactgtagct cttttcattt cagttgctcc
     3961 cttctttata agaatttgta cgtgtgtagg caaataacga gaatgccgcg ctaagaatga
     4021 atgttacaat cccaataacc gaagctaaat tataatccgc agcttctact gttaatttat
     4081 aaagccatgt cacgagcaaa tccgtatccc cagcaccata gaagttacta ttcgaaggtc
     4141 ctccaccagt caagagatag atcacattaa agttatttat atttccaata aattgttgaa
     4201 tcagacttgg caacatcacc gttaagattt gagggaaagt tatgtatcta aataaatgaa
     4261 aactgttacc tccatccatt cgcgccgctt ccaattgatc tttcggtaga ttcattaaaa
     4321 tccccgtggc gattaacata gttaccggaa tcccaatcca catattgaca aatatgacgg
     4381 atacctttgc tagcaaagca tctgtcaaaa atggtatcgg ctcagctata attccccaat
     4441 taagtaacat cgtattaagc ggtcctgctg catgcaacaa gttctgcatt acgagaagtg
     4501 acacaaacgg aggtaccgcc atagttataa caaagatagt gcgccaaaac tttttgaatt
     4561 taacaccctt atgattaata agaagtgcaa gcaatacgcc aaaaaagaaa caagtagcag
     4621 tagctaaaag cgcccaaata agtgtccatc caagcaccgg aaagaacgta ctggaaatat
     4681 caccatttag cacattttta aagttaacaa atcctaccca tccaaataaa ttccttggcg
     4741 gtaaatgttc atgatcataa ttggtaaaag ccaaagaaat catataaaca agtggcatta
     4801 tcgtaaacac cacaacccca atcatcggga tcgtcagtaa agttacatga aatttattgt
     4861 ctagcaaact ctttaagtct tccttaaatg ttgggatttt tttattttcc cgctggaagc
     4921 cctccacctg gcaagcgctt ctaatattag caaggtacaa gaagagaaat agtacacaaa
     4981 taacaactgt cataatccca tatattagca tcagcatgga attatcgccc ggtgttcgaa
     5041 ccataatacc taaactctta tcaaaattcc acgattggtt aactgtccct aatgtcgcca
     5101 taccttgaat taaggtaatg ccataaaaca caaggaaaaa caagaaagca agttcactaa
     5161 aaagaaatag aagtcccttc gcaatttgct tatgggccaa attaccagcc cccataatta
     5221 cataagataa tctcgtagaa acagaaccat tcttaaaaat attaaaataa ttcttcttaa
     5281 ccatcatata cttaacctac tttcctattt cgctggtgta atatctttga ctaatttatc
     5341 gagcgcctct ggataatctt ctttcttaat cttgccttta taagtatcta ctaatagcgg
     5401 gttcatatgt tgccaaaaaa cgttcatttc aggtattttc ggcattaaaa cggagtgctt
     5461 tccggatgtc atatcaataa ctgctttcgc cacatcgtcc ttttctactg tagaactagt
     5521 tcgtgcctct aaattgctcg gaattttccc taactcttta aaagcttttt cctgcacatc
     5581 cgcattagta atataatcag ctagttccat cgcatctaat ggcgatttag taaatgcgtt
     5641 cacacagtat atcccgcttc cttggaaagc catcatatct acctgaccac ttccaaaatc
     5701 ggccttcgga tatactgcca ctcccatatt ttcacctaaa acttctcgta tcgcatcttt
     5761 attccaaacc ccactaaaaa cggcatttat tttaccggat ctaagcgcac taatctcatc
     5821 tgcatttaca gcgacaacat taggattatt tttcagctca ccaatccagt tcaatacttg
     5881 gacgccttct ggagtgttaa aggttgtccc ataaggatct tcgccgttct caccataaag
     5941 atatgtacca tttgcaataa accaaggtgt ttcacgataa tccgcgccag cttccgcaag
     6001 atttattccg agcttccctt tagacgttat tccagaaaaa gttttaatat catcctctga
     6061 aaaaacgcgc ttatcataat acataaacat cgcttccgcc gtcacaggga aaccatacat
     6121 tttatcttga tatgtagcag cttgaatgga ggttggtgta ttatttttct taatatcatc
     6181 tgtatacttt gtcaattggt aaaccgcacc agactctacc agttgtccta gacggtcatt
     6241 cggagttata aatacat
//
LOCUS       DASEAA010000152         6237 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.152, whole genome shotgun sequence.
ACCESSION   DASEAA010000152 DASEAA010000000
VERSION     DASEAA010000152.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6237
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.152"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..952
                     /gene="mltG"
                     /locus_tag="U0342_002353"
     CDS             <1..952
                     /gene="mltG"
                     /locus_tag="U0342_002353"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465024.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="endolytic transglycosylase MltG"
                     /protein_id="HEM2423693.1"
                     /translation="ASKEKITVEIPAGSSISDISTILEDKKVINNASIFSFYVKYNND
                     TNLKAGNYEFSPSMNTDQIVKKMQEGKTVAPAKLVIPEGYTLDQIADRIVAYQPKLKK
                     ADVLKTMDDPEFVASMIKAYPDTVTNDVLNKSIKHPLEGYLYPATYTFKGTDVSAEQI
                     ITEMVKATDVNIAKYRDELTKQKMSVHKFLTMSSIIEKEATENVDRKMIASVFYNRLA
                     KDMRLQTDPTVLYALGEHKSKTTYKDLEVDSPYNTYKNNGLPPGPISNSGDSSMEAAL
                     YPEKSDYLYFLANTKTGKVYFSKTLEEHNKLKEEHITKNN"
     gene            1028..1681
                     /locus_tag="U0342_002354"
     CDS             1028..1681
                     /locus_tag="U0342_002354"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465023.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="O-methyltransferase"
                     /protein_id="HEM2423694.1"
                     /translation="MNDIIHDYLLKNIPKSSPFFEELEAYAKENEVPIMEPDSLYCLL
                     QILDIQKPKRILELGTAIGYSALKMADKLPDAEIITVERDEERYEQAIHNIQRYGAND
                     RVKVLLTDAIEGAEEILAHGPFDAIFIDAAKAQYEKFFHIYTDSLAENGVIYSDNVLF
                     KGLALDMTPEKQRKLRVARKMRHFNDFLVTHPDFETTTIPLGDGLSISKRKKTGGVS"
     gene            1678..2307
                     /gene="udk"
                     /locus_tag="U0342_002355"
     CDS             1678..2307
                     /gene="udk"
                     /locus_tag="U0342_002355"
                     /EC_number="2.7.1.48"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465022.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEM2423695.1"
                     /translation="MTKKPIVVGVTGGSGSGKTSVTKAICDHFSGHSILMIAQDVYYH
                     DQANISFEDRLKVNYDHPLAFDTDLLISHIAALRRYETIEKPIYDYAKYTRKKEVEIQ
                     EPREVIILEGILILEDKRLRDLMDIKVYVDTDDDIRFIRRLLRDMKERGRTMDSVIEQ
                     YLSVVKPMHNEFIEPTKKFADIIIPEGGENHVAIDLMTTKIESILQKHV"
     gene            2501..2983
                     /gene="greA"
                     /locus_tag="U0342_002356"
     CDS             2501..2983
                     /gene="greA"
                     /locus_tag="U0342_002356"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465021.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription elongation factor GreA"
                     /protein_id="HEM2423696.1"
                     /translation="MATEKVFPMTLDGKAKLENELQELKTVKRKEVVERIKIARSFGD
                     LSENSEYDSAKDEQAFVEGRITTIENMIRNAQIIDAAEAHNGLVTLGNTVTFIELPDG
                     EEETYTIVGSAEADPFEGKISNDSPIAKGLLGHKEGEEVTIQTPAGDMSVKIEKITAS
                     "
     gene            3034..3657
                     /locus_tag="U0342_002357"
     CDS             3034..3657
                     /locus_tag="U0342_002357"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465020.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YrrS family protein"
                     /protein_id="HEM2423697.1"
                     /translation="MADKRQSNNRRIKQNLVEGSRSQQNTKRKKTNLVLNVLIIVVSL
                     LIIGSLYFVLFKTESDPTQQDNKTASSTAKKEDAAKSSEKKKDSSDDKTTETTESDDP
                     NVAKVITKDWKPIGTEQTGDHVNSYSSTSVDWQEKRKAFSAATDIPISNTSLWFVEQG
                     ADPATQAIGTLSTKENPDKAYRVYITWVDGEGWQPTKVEELKTNDKR"
     gene            3707..4408
                     /locus_tag="U0342_002358"
     CDS             3707..4408
                     /locus_tag="U0342_002358"
                     /EC_number="3.2.2.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465019.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5'-methylthioadenosine/adenosylhomocysteine
                     nucleosidase"
                     /protein_id="HEM2423698.1"
                     /translation="MTIGIIGAMEEEVELLKNSMPSVEEIVIGGAKFYVGEIAGKEVV
                     LLESGIGKVNAALGTTLMADRFKPEVIINTGSAGGMAEGLAVGDVIISDRLAYGDVDV
                     TEFGYTYGQVPRMPAFYQGDAVLLKKAETIYREYFAASENKAVYGLVVTNDSFIMRPD
                     QHETIRTFFPDVKAVEMEAAAIAQVAYQFDIPFLIIRAISDLANQEATISFDEFIHLA
                     AKQSATCIIELLKTI"
     gene            complement(4444..>6237)
                     /locus_tag="U0342_002359"
     CDS             complement(4444..>6237)
                     /locus_tag="U0342_002359"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465018.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M3 family oligoendopeptidase"
                     /protein_id="HEM2423699.1"
                     /translation="ALTWDLENIYAGGSGSEELQQTLQEVKADLDSFVVNVSEWDVPE
                     NVEASAEFLLLVNQNADISKILLTAGSFLECLASADINDSRANELSALIYQYVATLAT
                     AEDEWHDKFAQVSDRVWDELMEQNGLSQISFILSEARTNRRKKGSKEQEAAINSLAVD
                     GYRGWSDHYDTIVGKLRMHVTINGEEKDVSAGQALNLLNHPDRAVRQAVFKEYTRVWQ
                     SEARLFSDTLNHLSGFRLATYEIRKWDNILDEPLAINRLDEQTLKSMWNVIQTNKPTF
                     VRFLDRKAKLLGLEKLSFYDVEAPLVFSSEPKKYSYQEGAEFIIEQFNKFSPKMANFA
                     QSAFEKGWIEAEDRDNKRPGGFCTDFPVEKESRIFMTYDGAPGTVATLAHELGHAFHS
                     HVIRDEPFENTDYAMNVAETASTFAEMIIADASVKDAKTKEEKITLLEDKIGRSIAFF
                     MNIHARFIFECNFYEARKQGVVSVDRLNALMEEAQREAYLDALDEYHPQFWASKLHFY
                     IADVPFYNFPYTFGYLFSLGIYHKAQAEGASYEDKYIALLQDTGSMTTEQLAEKHLGV
                     DLRKADFWEEAVALAAKDVEDFLTLTEEYIK"
BASE COUNT         2122 a         1125 c         1205 g         1785 t
ORIGIN      
        1 agcaagtaaa gagaaaatca ccgtagaaat cccagcaggc tctagtattt cagacatttc
       61 tactattcta gaagataaaa aagtaattaa taatgcttct attttctcgt tttatgtaaa
      121 atataataat gatacgaatt taaaagcagg gaactatgaa ttcagtccgt cgatgaacac
      181 agatcaaatc gtcaaaaaaa tgcaagaagg aaaaacggta gcacctgcta aactggtcat
      241 tccagaaggt tacacgttag accaaattgc tgatagaatt gttgcttatc aaccaaaact
      301 aaaaaaagca gatgtactta aaacaatgga cgatcctgaa tttgttgctt ccatgattaa
      361 agcatatcca gatacagtaa caaacgacgt attaaacaaa tctattaaac atccattaga
      421 aggttattta tacccagcta cttacacctt caaaggaacg gatgtatctg cagaacaaat
      481 tattacagag atggtcaagg caacggatgt gaacattgct aagtaccgcg atgaactaac
      541 gaaacaaaaa atgtctgtac acaaattctt aacgatgtct tccattatcg aaaaagaagc
      601 aactgaaaac gtagatcgca aaatgattgc cagcgtattt tataatcgtt tagcaaaaga
      661 tatgcgattg cagacagacc caactgttct ttatgcgctt ggtgaacaca aaagtaaaac
      721 gacttacaaa gatttagaag tcgattcacc atacaacaca tacaaaaaca atggactacc
      781 accaggtcca atttcaaata gtggagactc ttcgatggaa gcagcacttt atccagaaaa
      841 aagtgattac ctatacttct tagcaaatac aaaaactggt aaagtatact tctctaaaac
      901 tttagaagag cacaataaac taaaagaaga gcatattacg aaaaataatt aaaacaacca
      961 cttgtcagaa gcatgtttag catgtttttg gcaggtgctt tgtttgttaa gataggggat
     1021 cctagcagtg aatgatatta ttcatgatta tttattaaaa aacattccta agagcagtcc
     1081 tttttttgaa gaattagagg cgtatgcgaa ggaaaatgaa gtaccgatta tggaaccaga
     1141 ttctttgtac tgcttattac agattttaga tatccaaaaa ccaaagcgca tattggagct
     1201 tgggacggcc attgggtact ccgctttaaa aatggcagat aaacttcctg atgcagagat
     1261 tatcacggtt gagcgcgacg aagaacgata tgagcaagca atacataata ttcagcgcta
     1321 cggggctaat gacagagtga aagttttatt aacagatgct attgaagggg ctgaagaaat
     1381 tttggctcac ggtccatttg acgcaatatt tattgatgca gccaaagcgc aatatgagaa
     1441 atttttccat atttataccg attctttagc tgaaaatggc gttatttata gtgataatgt
     1501 tctttttaaa gggttagcgc tagatatgac accagaaaaa caacgcaaat tacgtgttgc
     1561 taggaaaatg cgccatttta acgatttttt agtgacgcat cctgattttg aaacaacgac
     1621 cattccacta ggggacggcc tatctatttc caaaagaaag aaaactggag gcgtatcatg
     1681 acaaaaaaac caatcgtagt cggcgtaact ggcggttcag gttctggtaa aactagtgta
     1741 acgaaagcca tttgtgatca ttttagcgga cactcgattt tgatgattgc tcaagatgtc
     1801 tattatcacg atcaagccaa tattagtttt gaagatagat taaaagtaaa ttatgatcat
     1861 ccactagctt ttgatacgga cttactcatt tcacatattg ccgcactgcg tcgctatgaa
     1921 accatagaaa agccgattta tgattatgcc aaatatacgc gaaaaaaaga agtagaaatc
     1981 caagaaccta gagaggttat tattttagaa ggaattttaa ttttagaaga taaacgcctt
     2041 agggatttga tggatattaa agtatatgtg gataccgatg atgatattcg ttttattcgc
     2101 agacttttac gcgatatgaa agaacgtggt cggacaatgg attctgttat cgagcaatat
     2161 ctttctgttg ttaaaccaat gcacaatgaa tttatagaac caacgaaaaa atttgccgat
     2221 attattattc cagaaggcgg agagaatcac gttgcaatcg acttaatgac aacaaaaatt
     2281 gaatccattt tgcaaaaaca tgtataaaca acaggtatca cttgtcaaat agagaaattt
     2341 aaggtaaaat ttttctagta aaaagagtgg caattgcttg ctatttctag cgtggcgtgt
     2401 taatctttct gacgagtagt aatatttttg atgaaggtgc ggagcgatat ctccgtgctt
     2461 ttctatacaa taatgaacaa acaaaaagga gcgaaatcga ttggcgacag aaaaagtatt
     2521 tccaatgacc ctagatggga aagcaaaatt agaaaatgaa ttacaagaat taaagacggt
     2581 aaaacgtaaa gaagtagtag aacggatcaa aattgcccgt agttttggtg acttatcaga
     2641 gaactccgag tatgattccg caaaagacga acaagctttt gttgaaggtc gtatcactac
     2701 tattgaaaat atgattcgta acgcacaaat cattgatgct gctgaagcac ataatggttt
     2761 agtaacactt ggaaatacag ttactttcat tgaactacca gacggtgaag aagaaactta
     2821 cacaatcgta ggtagcgctg aagcagaccc gtttgaaggt aaaatttcca atgattctcc
     2881 aattgccaaa ggtttacttg gtcataaaga aggggaagaa gtaactatcc aaacaccagc
     2941 tggtgacatg agcgttaaaa tcgaaaaaat cactgcatct taatattatc ggatgttttt
     3001 atacagcggt tacttataag gtggtgaatg caaatggcag acaaacgaca atcaaataac
     3061 cgtcgaatta aacaaaactt ggtggaagga tctcgttccc agcaaaatac aaaacgaaaa
     3121 aagactaatt tagttttaaa cgttttaatt atcgtggtaa gcttacttat cattggtagt
     3181 ttgtattttg tgctgtttaa aacagagagt gatcctacgc aacaagataa caaaacggca
     3241 tcttccactg caaaaaaaga agatgccgct aaatcatccg aaaagaaaaa agattcttca
     3301 gatgataaaa caactgaaac aaccgaaagc gatgatccca atgtagcgaa agttattacc
     3361 aaagattgga aacctattgg tacagaacaa actggtgatc atgtgaattc gtacagttcc
     3421 acaagtgtag attggcaaga aaaacgtaaa gctttttctg cagcaactga tatcccaatc
     3481 tcaaatacgt cgctttggtt tgtagagcaa ggagctgatc ctgcgacaca agcaattggt
     3541 acactctcta ctaaagaaaa cccagacaaa gcatatcgtg tttatattac ctgggttgac
     3601 ggtgaaggat ggcaaccaac caaagtggaa gagcttaaaa caaatgacaa aagataaaag
     3661 cacagaagtt agctgttaac gactgtgctt ttttggaggt tacataatga caattggtat
     3721 tattggagca atggaagaag aagtagaact tttaaaaaat agcatgccaa gcgtagaaga
     3781 aattgttatt ggcggagcta aattttacgt tggcgaaatt gctggcaaag aagtagtgct
     3841 tttggagtca ggtattggta aagtaaatgc cgcacttgga acaacactta tggcggaccg
     3901 ttttaaacca gaagtaatta ttaacactgg ttctgctggc ggaatggcgg aaggattagc
     3961 cgttggtgat gttattattt ctgaccgatt agcttatggc gacgtagatg taacggaatt
     4021 tggttacact tacggtcaag tcccaagaat gccagctttt tatcaaggag acgctgtact
     4081 tcttaaaaaa gcggaaacca tttaccgtga atattttgct gcaagcgaaa acaaagcagt
     4141 ctatggactc gttgttacga atgattcatt tattatgcgt ccagatcagc acgaaacaat
     4201 tcgcactttt ttcccagatg taaaagcagt tgagatggaa gctgcggcaa tcgcacaagt
     4261 tgcttatcaa tttgatattc ctttcttaat tattcgcgct atttcagatt tagcgaatca
     4321 agaagcgact atttcatttg atgaattcat tcacttagca gcgaaacaat ccgcaacatg
     4381 tatcatcgaa ttactaaaaa caatttaaaa aatgcctgga gtttttaagc tccaggcatt
     4441 tttttatttg atatattctt ctgttaaagt aaggaaatct tctacatctt tggcagcaag
     4501 agcaacagct tcttcccaga agtcagcttt acgtaagtca acgcccagat gtttttctgc
     4561 tagctgttct gttgtcatcg aaccagtgtc ttgtagtagt gcaatgtatt tatcttcgta
     4621 actagcacct tctgcttgag ctttatggta aatgccaagc gagaacaaat aaccgaaagt
     4681 gtacgggaag ttataaaacg gtacatcagc aatgtagaaa tgtagtttag aagcccagaa
     4741 ttgtggatga tattcatcca aggcgtccaa gtatgcttct cgttgcgctt cttccattag
     4801 agcgttaagt cgatcaaccg aaacgacacc ttgtttacgt gcttcataga agttacattc
     4861 aaaaataaag cgagcatgaa tattcataaa gaaggcgata ctacgaccga ttttatcttc
     4921 caacaacgtg attttttctt cttttgtttt tgcatctttc acagaagcat ctgcaataat
     4981 catttctgca aaagttgaag cggtttccgc cacgttcatc gcataatcag tattttcaaa
     5041 gggttcatcg cgaatcacgt gtgaatggaa tgcgtgccca agttcgtgag caagagtagc
     5101 gactgttcct ggagcgccat catatgtcat gaaaatgcga ctttcttttt caacagggaa
     5161 gtcggtacaa aaaccaccag gacgtttatt atcacggtct tccgcttcaa tccaaccttt
     5221 ttcaaacgct gattgcgcaa agtttgccat tttcgggctg aatttgttaa attgctcaat
     5281 aataaattca gcgccttctt gatacgaata tttcttaggt tcgcttgaaa agacaagagg
     5341 agcttctaca tcataaaaac ttaatttttc aaggccaagt aatttcgctt ttctatctaa
     5401 gaatcgaaca aaagtaggct tgttcgtttg gatgacattc cacatagatt ttaacgtttg
     5461 ctcatctaaa cgattaattg caagaggttc atctagaata ttatcccatt tacgaatttc
     5521 atatgtagct aaacggaatc ctgataaatg atttaacgta tcgctaaata aacgagcttc
     5581 actttgccat acacgtgtat attctttaaa aactgcttgg cgaaccgcgc gatcagggtg
     5641 atttaataag tttagcgctt ggccagcaga aacatctttt tcttctccgt taatggtaac
     5701 atgcatgcgg agtttaccga caatggtatc ataatgatca gaccagccgc gataaccatc
     5761 gacagctaaa gaattaatag ctgcttcttg ttctttactc ccttttttac ggcggttcgt
     5821 acgcgcttca cttaaaataa agctaatttg cgataaacca ttttgttcca ttaattcgtc
     5881 ccaaacacgg tcagaaactt gtgcaaattt gtcatgccat tcatcttcgg ccgtagctag
     5941 agttgcaacg tattgataaa ttaacgccga aagctcattt gcacgcgagt cattgatatc
     6001 agcggaagca agacattcta aaaatgatcc ggcagtgagt aaaattttag atatatctgc
     6061 attttgatta acgagaagta aaaattcagc agaggcttcc acattttcag gaacatccca
     6121 ctccgaaaca tttacaacaa agctgtctaa atcagctttt acctcttgaa gcgtttgttg
     6181 taattcttca gagccgctgc cgccagcata tatattttct aaatcccatg ttaatgc
//
LOCUS       DASEAA010000153         6237 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.153, whole genome shotgun sequence.
ACCESSION   DASEAA010000153 DASEAA010000000
VERSION     DASEAA010000153.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6237)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6237)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6237
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.153"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1631)
                     /locus_tag="U0342_002360"
     CDS             complement(<1..1631)
                     /locus_tag="U0342_002360"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2423700.1"
                     /translation="MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSL
                     DTSNIIAEEVAQEKPAEVEQLEEIPITDELMQNPDVLEQPVADSDDTDLTVVSSGDFW
                     TIYRNTVNNEYSLCMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFEAYFRGTVFT
                     VLESVRIEQCNLSGVTSFDMAFYNSGIEKVIIRDNDYPTAPSLLATTYMFSLCRNLSE
                     LDLSGLDTSAVTNIYGMFQNCISLEELDLSNFDTSSVTNMYSTFSGCRSLEKLDVSNF
                     DTSSVTNMQFMFEKCSSLEELDLSNFDTSSVTTMSYMFQLCPALKSLYLDNFTDAAIM
                     TGMFGGTTSLTYLFVSHNLSTFNNLENTSWYDEKNWVQFSNLSQLQTYHRQQSEPTGY
                     RKGAFLSLTMDAMGGQFEDAEEQKVQNKVSGEYWDEIVPVKEGHYFDGWYLNQDCTNK
                     FDFSLPADASITIYAKWIENYTVIIPASISLNETSELKVEGINRGDKNLSVGLNRTAM
                     SVSESNKLTLANTADTTVQCLAPLSWDGSETNPEKA"
     gene            complement(1767..3836)
                     /locus_tag="U0342_002361"
     CDS             complement(1767..3836)
                     /locus_tag="U0342_002361"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2423701.1"
                     /translation="MKKLSIRVILIVTIIFIACGSANVSIAQERDIINKLPEVELGSL
                     YTSNLITEEVAQDKPAEVENLEQAPTTDDLVQNPDVLEQPIADSDDSDLTVVNSGDFW
                     TIYRNTVNGEYSLHMFGNVPSSKPTAWNSYLNRIKHIEIEEATLTGNFSSYFRNNVFT
                     VLESVRIERSNLSRVTSFALAFYGSGIEKVIIRDNNYPTAPSLLTTEGMFKNCSNLME
                     VDLSGLDTSAVTTMWDMFNSCRALEELDVSHFDTSSVTNMSYMFYDNRNLEVLDVSNL
                     DTGSVTNMYAMFEDCTSLEELDVSHFDTSSVTDMYRVFNGCEKLKKLDVSNFDTSSAT
                     AMVQMFRNCSALEKLDVSNFNTSLVTDMRAMFAGCTSLEALDVSNFDTSSVTNMAAMF
                     SDNEKLEKLDLSTFDTSSVTNMGTMFKNCTALKSLFLDNFTHAASSTDMFTGTTSLSY
                     LFVSHNVSNFNGLENTSWYDEKNWVQFSNLSQLQTYHRKQSEPTGYRKGAFLSLTMDA
                     MGGEFEDAEEQKVQNKISGEYWEEVIPVKEGHYFDGWYLDQNFTNKFDFSLPATVSAT
                     LYAKWVENYTVVIPASISLNEATELKVEGINRGSKTLSVGLNYEETTISESNKLTLAN
                     TADTTVQCLAPLSWDGSETNPKKAILTLAPGSEITEGDAVMEIESPENIQAGKYTGNL
                     VFSINYE"
     gene            complement(3972..6125)
                     /locus_tag="U0342_002362"
     CDS             complement(3972..6125)
                     /locus_tag="U0342_002362"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2423702.1"
                     /translation="MKKFSMRVVLIISVLFIALGNANVSIAQERDTTNKLPEEELSSL
                     DTSNIIAEEVAQEKPAEVENLEEIPTTDELMQNPDVREQPVADSDNPDLTVVSSGAYW
                     TIYRNTVNGEYSLHMFGNVPSSIPSAWKSYLSNIKHIEIEEATLTGSFETYFKSKIGG
                     FLALESVRIERSNLSGVTSFREAFFNPILQKVIIRDNDYPTVPSLLTMESMFENSYNL
                     TELDVSGLDTSAVTNMKNMFYKCSVLKELDLSNWDTSAVNNMNSMFGYCESLEKLNVS
                     NFDTSSVNDMHYMFRDCKALEKLDVSDFDTSSVTTMYGMFVNSTSLKELDVSNFNTSS
                     VTTMQGMFSTCRALEKLDVSNFDTSSVTTMLGMFAACNSLEELDVSNFDTSSVTNMYS
                     MFADCELLEKLDVSHFDTSSVTDMRTMFNNCQSLEKLDVSNFDTSLVTNMQGMFQNCT
                     ALKSLYLDNFTTAKTMTDMFTGTTSLTYLFVSHNLQSFYGLANTNWYDEKNWVQFSNL
                     SQLQTYHRNQSEPTGYRKGAFLSLTMDAMGGEFEDAEEQKVQNKISGEYWEEVIPVKE
                     GHYFDGWYLDQNFTNKFDFSLPAAVSTTIYAKWVENYTVVIPASISLNETSELKVEGI
                     NRGSKTLSVGLNQLATSISESNKLTLANTADTTVQCLAPLSWDGSENNPENAILTLAP
                     GSEITEGDAVVEIESPENIQAGKYTGNLVFSINYE"
BASE COUNT         1885 a         1350 c          995 g         2007 t
ORIGIN      
        1 gctttttctg gattagtttc tgacccgtcc caactcagtg gtgccaaaca ttggactgtt
       61 gtgtctgccg tattggctaa agttagcttg ttgctttcag aaacagacat tgctgttcga
      121 tttaatccca cggacaaatt tttatctcct cgattaatcc cttccacttt caattcagaa
      181 gtttcattta aagaaataga agctggaata atcactgtat agttttctat ccattttgcg
      241 tagatagtta ttgatgcatc agcgggcaat gaaaagtcaa acttattggt acaatcttga
      301 ttaaggtacc acccgtcaaa ataatgtcct tctttcacag gaactatctc atcccagtac
      361 tccccagaaa ctttattttg tactttttgt tcttccgcgt cttcaaactg cccacccatc
      421 gcatccatcg ttaaggaaag gaaggcacct tttctgtagc ctgtaggttc gctttgttgc
      481 ctgtgatatg tctgtagttg cgagagattc gaaaactgca cccaattctt ttcatcatac
      541 cagcttgtat tttctaagtt attaaaagta cttaaattgt gactgacaaa caagtaggtt
      601 agggaggtgg ttccaccaaa catacctgtc ataattgctg catccgtaaa attatccaga
      661 tataaagatt ttaacgctgg acaaagttga aacatgtaag acatagtagt cactgaactt
      721 gtatcaaaat tacttagatc taattcttca aggctactac atttttcaaa catgaactgc
      781 atatttgtaa ctgaactcgt atcaaagttg cttacatcca atttctcaag tgatctacaa
      841 cccgaaaacg tggaatacat attagtaacg gaactggtat caaaattact tagatctaac
      901 tcctcaaggc taatacaatt ttgaaacatg ccatatatat tagttacagc actcgtatca
      961 aggccactca aatcaagctc actaagatta cgacataagg aaaacatata cgtagtagcg
     1021 agtaaagatg gtgctgtcgg ataatcatta tccctaataa taactttttc aattcctgaa
     1081 ttataaaatg ccatgtcaaa agacgtcact ccagacaaat tacactgttc aattctcaca
     1141 ctttcaagta ctgtaaaaac agtacctcta aaatacgctt caaaacttcc tgtcagcgta
     1201 gcttcttcaa tctctatatg tttaatgctt ttcaaataac tattccaagc ggttggtcta
     1261 ctgcttggca cgttaccaaa catacacaag ctatattcat tgttcacagt attacgataa
     1321 atcgtccaaa aatcacctga gctgaccact gttaaatccg tatcatcgga atcagcaaca
     1381 ggctgctcca gaacatctgg attttgcatc aactcatccg taattgggat ttcttctagt
     1441 tgctccacct cggctggttt ctcttgcgcg acttcttctg caatgatatt agaggtatcc
     1501 agagaaccta gctcctcttc tggaagctta ttcgttgtgt ccctttcttg tgcgatagaa
     1561 acattagcgc tcccaaaagc aataaaaagc acagaaataa taaggaccac tcgcatggaa
     1621 aactttttca tcagctcccc tccttctttc ctaattagtt tctagatgcc gaactttcta
     1681 gctgcaattt aattatagag gagtcgaaaa gcttttccgg ccataaaatt ttaacttctt
     1741 aaaattctat ggcttgctta gcaaagttat tcataattaa tcgaaaatac taagttcccc
     1801 gtatattttc cagcctggat attttctggg gattctattt ccatgactgc atcgccttct
     1861 gttatttccg aacctggagc gagggttaaa atcgcttttt tcggattagt ttctgacccg
     1921 tcccaactca gtggcgccaa acattggact gttgtgtctg ccgtattggc caaggttagc
     1981 ttgttgctct cagaaatggt tgtttcctca taattcaaac ctacggataa agttttactt
     2041 ccacgattaa tcccttctac cttcaattca gtagcttcat ttaaggaaat agacgctgga
     2101 ataaccaccg tataattttc tacccatttg gcgtagaggg ttgctgaaac agttgctggc
     2161 aatgagaagt caaacttgtt agtgaaattt tgatcaagat accacccgtc aaagtaatgt
     2221 ccttctttta ctggaatcac ttcttcccag tactccccag aaattttatt ttgtactttt
     2281 tgttcttccg catcttcaaa ttctccaccc atcgcatcca ttgttaagga aaggaaggca
     2341 ccttttctgt agcctgtagg ttcactttgt ttccggtgat atgtctgtag ttgcgagaga
     2401 ttagaaaact gtacccaatt cttttcgtca taccagcttg tattttctaa cccattaaaa
     2461 ttgcttacat tgtgactgac aaacaagtaa gataaagagg ttgttccagt aaacatatct
     2521 gtcgagcttg ctgcatgtgt aaaattatct agaaataaag attttaacgc tgtacaattt
     2581 ttaaacatgg tacccatgtt agtcactgaa ctggtatcaa aggtacttaa atcaagcttc
     2641 tccagttttt cattatcaga aaacatggca gccatattag ttactgaact cgtatcaaaa
     2701 ttacttacat ctaacgcttc aagactagta caaccagcaa acatggcacg catatcagtt
     2761 actaagctcg tattaaaatt acttacatcc aacttctcaa gggcgctaca atttctaaac
     2821 atttgaacca ttgcagtagc ggaactggta tcgaaattac ttacatctag tttcttcagt
     2881 ttttcacagc cattaaacac tctatacata tcagttactg aactcgtatc aaaatgactt
     2941 acatccagct cttcaagact agtacaatct tcaaacatgg catacatatt agttactgaa
     3001 ccggtatcaa ggttgcttac atccagcacc tcaaggtttc tattatcata aaacatgtaa
     3061 gacatattag ttactgaact cgtatcaaaa tgacttacat ccagttcctc aagtgcccta
     3121 cagctgttaa acatatccca catagtagtt accgcactag tatcaagacc actcaaatca
     3181 acctccataa ggttggaaca atttttaaac ataccttccg tagtgagtaa agatggtgct
     3241 gtcggataat tattatctct aatgataact ttttcaattc ctgaaccata aaatgcgagt
     3301 gcaaaagacg tcactctaga tagattcgaa cgttcaattc tcacactctc aagtactgtg
     3361 aaaacattat ttctaaaata cgatgagaaa tttcctgtca aagtagcttc ttcaatctct
     3421 atatgtttaa ttctgttcaa ataactattc caagcggttg gtttactact tggcacgtta
     3481 ccaaacatat gcaagctata ttcaccgttc acagtattac gataaattgt ccaaaaatca
     3541 cctgagttta ctactgttaa atccgaatca tccgaatcgg caataggctg ctcaagaaca
     3601 tctggatttt gcaccaaatc atccgtagtt ggggcttgtt ctagattctc gacctctgcc
     3661 ggtttgtctt gcgcgacttc ttctgtaatg agattagagg tataaagaga acccagctca
     3721 acctctggaa gtttatttat tatatccctt tcttgtgcga tagaaacatt agcgctccca
     3781 caagcaatga aaataatggt aacgattagg atgactcgta tggaaagctt cttcatcagc
     3841 tcccctcctt cttccgtaat tagtttctag ttgctaaaca ttctagctgt tattttatta
     3901 tagaggagta agggggtacc tcgagccata aaattttaac ttcttaaaat tttatggctt
     3961 gcttagcaaa gttattcata attaatcgaa aatactagat ttcccgtata ttttccagcc
     4021 tggatatttt ctggggattc tatttccacg actgcatcgc cttctgttat ttccgaacct
     4081 ggggctaggg ttaaaatggc attttccgga ttattttcgg aaccatccca actcagcggt
     4141 gccaagcatt ggactgttgt gtctgccgta ttggccaagg ttagcttgtt gctctcagaa
     4201 atagatgttg ctaattggtt taatcccacg gacaaagttt tacttccacg attaatccct
     4261 tctactttca attcagaagt ttcatttaaa gaaatagaag ccggaatgac cactgtatag
     4321 ttttctaccc atttggcgta gatagttgta gatacagcag ctggcaatga aaagtcaaac
     4381 ttattagtga aattttgatc aagataccac ccgtcaaagt aatgtccttc ttttactgga
     4441 atcacttctt cccagtactc cccagaaatt ttattttgta ccttttgttc ctccgcgtct
     4501 tcaaattctc cacccatcgc atccattgtt agagaaagga aagcgccttt tctatagcca
     4561 gtaggttcac tttgatttcg atgataggtc tgtagttgcg agagattaga aaactgtacc
     4621 caattctttt cgtcatacca gtttgtattt gccaacccat aaaaagattg taaattgtga
     4681 ctgacaaaca agtaggttag ggaggtggtt ccagtaaaca tatctgtcat agtctttgcg
     4741 gtagtaaaat tatccagata taaagatttt aacgctgtac aattttgaaa catgccctgc
     4801 atattagtaa ccagactagt atcaaaatta cttacatcta atttctcaag tgattgacag
     4861 ttattaaaca tggtacgcat atcagtaaca gaactcgtat caaaatgact tacatctaat
     4921 ttctcaagta attcacaatc agcaaacatg ctatacatat tagtaacgga actcgtatca
     4981 aaattactta catctaactc ttcaaggcta ttacaagcag caaacatgcc cagcatagta
     5041 gtaacggaac tcgtatcaaa attacttaca tccaatttct caagtgctct acaggtacta
     5101 aacatgccct gcattgtagt tactgaacta gtattaaaat tacttacatc taattcttta
     5161 agactggtac tattaacaaa catgccatac atagtagtaa cggaactcgt atcaaaatca
     5221 cttacatcca atttttcaag tgctttacag tccctaaaca tataatgcat atcattcaca
     5281 gaactcgtat caaaattact tacattcaat ttctcaagtg attcacagta tccaaacatg
     5341 ctattcatat tattaacggc actcgtatcc cagttgctta aatccagttc cttaagtacg
     5401 ctacatttat aaaacatgtt cttcatatta gttactgcac tagtatcaag accactcaca
     5461 tcaagctccg taaggttgta actattttca aacatacttt ccatagtgag taaagatggt
     5521 actgtcggat aatcattatc tctgatgatc actttttgaa gtattggatt aaaaaacgct
     5581 tctctaaaag acgttactcc agacaaatta gaacgttcaa ttctcacgct ctcaagcgct
     5641 aagaaaccac caattttact tttaaaataa gtttcaaaac ttcctgtcaa agtagcttct
     5701 tcaatctcta tatgtttaat gttactcaaa taactcttcc aagcacttgg tatactgctt
     5761 ggcacgttgc caaacatatg caagctatat tcaccgttca cagtattgcg ataaatcgtc
     5821 cagtaagcac ctgagcttac cactgttaaa tccggattat ctgaatcagc aacaggctgc
     5881 tctcgaacat ctggattttg catcaactca tccgtagttg ggatttcttc tagattctcg
     5941 acctcggctg gcttctcttg cgcgacttct tctgcaatga tattagaggt atccagagaa
     6001 cttagctcct cttctggaag cttattcgtt gtgtcccttt cttgtgcgat agaaacatta
     6061 gcgttcccca gtgcaataaa aagcacagaa ataataagca ccactcgcat ggaaaacttc
     6121 ttcatcagct cccctccttc tttcgtagtt aatttctaga tgcaaacttt ctagctgcaa
     6181 cttaattata gaggagtcga gaagcatttc tggccataaa attttaactt cttaaaa
//
LOCUS       DASEAA010000154         6181 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.154, whole genome shotgun sequence.
ACCESSION   DASEAA010000154 DASEAA010000000
VERSION     DASEAA010000154.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6181)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6181)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6181
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.154"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            22..1395
                     /gene="glmU"
                     /locus_tag="U0342_002363"
     CDS             22..1395
                     /gene="glmU"
                     /locus_tag="U0342_002363"
                     /EC_number="2.3.1.157"
                     /EC_number="2.7.7.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463729.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional UDP-N-acetylglucosamine
                     diphosphorylase/glucosamine-1-phosphate
                     N-acetyltransferase GlmU"
                     /protein_id="HEM2423703.1"
                     /translation="MSKRYAVVLAAGQGTRMKSKLYKVLHPVCGKPMVEHVVDQISTL
                     NVDKVVTIVGHGAEKVQEHLAGKSEFVKQEEQLGTAHAVLQAKAELAGKDGVTLVVCG
                     DTPLIEASTMEALLKYHHEKRAKATILTTVIEDPTGYGRIIRDDLGIVEKIVEHKDAT
                     EKEQRISEINTGTYCFDNKALFEALENVSNDNVQGEYYLPDVIKILKDSDEVVAAYRM
                     ESFEESLGVNDRIALAEASRLMQRRINENHMRNGVTLVNPENTYIDIDVKIGQDTVIE
                     PGVMLHGETVIGDDCVVTSGSEIVNSVIGERVHVRTSSIFESKVGDDVQIGPYAHLRP
                     ESDIHDHVKIGNYVETKKAVVGEGTKLPHFIYMGDAEIGKNVNVGCGSIAVNYDGKNK
                     AKTIIGDNVFVGCNSNLIAPVKVGDRAFIAAGSTITKDVPDDALGIARAKQDNKLGYA
                     KHLNHGK"
     gene            1446..2402
                     /locus_tag="U0342_002364"
     CDS             1446..2402
                     /locus_tag="U0342_002364"
                     /EC_number="2.7.6.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463730.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribose-phosphate diphosphokinase"
                     /protein_id="HEM2423704.1"
                     /translation="MSNEYFDPKLKIFSLNSNRELAEEIAKEVGIELGKSSVTHFSDG
                     EIQINIEESIRGCHVYVIQSTSNPVNQNLMELLIMIDALKRASAATINIVMPYYGYAR
                     QDRKARSREPITAKLVANLIETAGATRMITLDMHAPQIQGFFDIPIDHLNAVRLLSDY
                     FSERHLGDDLVVVSPDHGGVTRARKMADRLKAPIAIIDKRRPRPNVAEVMNIVGNVEG
                     KVCIIIDDIIDTAGTITLAAKALREAGATKVYACCSHPVLSGPAMKRIEESPIEKLVV
                     TNSIALPEEKWIDKMEQLSVAALLGEAIVRVHENASVSSLFE"
     gene            complement(2446..3159)
                     /gene="prfA"
                     /locus_tag="U0342_002365"
     CDS             complement(2446..3159)
                     /gene="prfA"
                     /locus_tag="U0342_002365"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463731.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="listeriolysin O transcriptional regulator PrfA"
                     /protein_id="HEM2423705.1"
                     /translation="MNAQAEEFKKYLETNGIKPKQFHKKELIFNQWDPQEYCIFLYDG
                     ITKLTSISENGTIMNLQYYKGAFVIMSGFIDTETSVGYYNLEVISEQATAYVIKINEL
                     KELLSKNLTHFFYVFQTLQKQVSYSLAKFNDFSINGKLGSICGQLLILTYVYGKETPD
                     GIKITLDNLTMQELGYSSGIAHSSAVSRIISKLKQEKVIVYKNSCFYVQNLDYLKRYA
                     PKLDEWFYLACPATWGKLN"
     gene            complement(3432..4385)
                     /gene="plcA"
                     /locus_tag="U0342_002366"
     CDS             complement(3432..4385)
                     /gene="plcA"
                     /locus_tag="U0342_002366"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463732.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphatidylinositol-specific phospholipase C"
                     /protein_id="HEM2423706.1"
                     /translation="MYKNYLQRTLVLVLCFILCFFTFPLGGKAYSLNNWNKPIKNSVT
                     TKQWMSALPDTTSLAALSIPGTHDTMSYNGDMTWTLTKPLAQTQTMSLYQQLEAGIRY
                     IDIRAKDNLKIYHGPIFLNASLSGVLETITQFLKKNPKETIIMRLKDEQNSNDSFDYR
                     IQPLINIYKDYFYTTPRTDTSNKIPTLKDVRGKILLLSENHTKKPLVINSHKFGMQFG
                     ASNQVIQDDYNGPSVKTKFKEIVQTAYQASKADNKLFLNHISATSLTFTPRQYAAALN
                     NKVEQFVLNLTSEKVRGLGILIMDFPEKQTIKNIIKNNKFN"
     gene            4628..>6181
                     /gene="hly"
                     /locus_tag="U0342_002367"
     CDS             4628..>6181
                     /gene="hly"
                     /locus_tag="U0342_002367"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463733.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cholesterol-dependent cytolysin listeriolysin O"
                     /protein_id="HEM2423707.1"
                     /translation="MKKIMLVFITLILVSLPIAQQTEAKDASAFHKENLISSMAPPAS
                     PPASPKTPIEKKHADEIDKYIQGLDYNKNNVLVYHGDAVTNVPPRKGYKDGNEYIVVE
                     KKKKSINQNNADIQVVNAISSLTYPGALVKANSELVENQPDVLPVKRDSLTLSIDLPG
                     MTNQDNKIVVKNATKSNVNNAVNTLVERWNEKYAQAYPNVSAKIDYDDEMAYSESQLI
                     AKFGTAFKAVNNSLNVNFGAISEGKMQEEVISFKQIYYNVNVNEPTRPSRFFGKAVTK
                     EQLQALGVNAENPPAYISSVAYGRQVYLKLSTNSHSTKVKAAFDAAVSGKSVSGDVEL
                     TNIIKNSSFKAVIYGGSAKDEVQIIDGNLGDLRDILKKGATFNRETPGVPIAYTTNFL
                     KDNELAVIKNNSEYIETTSKAYTDGKINIDHSGGYVAQFNISWDEINYDPEGNEIVQH
                     KNWSENNKSKLAHFTSSIYLPGNARNINVYAKECTGLAWEWWRTVIDDRNLPLVKNRN
                     ISIWGTTLYP"
BASE COUNT         2023 a         1021 c         1245 g         1892 t
ORIGIN      
        1 gaatattgga ggttctatat aatgtcaaaa cgatatgctg tagtgcttgc tgctggccaa
       61 ggcacacgga tgaaatcaaa actttacaaa gtattgcatc ctgtttgtgg aaaaccaatg
      121 gtcgaacatg tagtagatca aatttcgacg cttaatgttg ataaagtggt tacaattgta
      181 ggtcacggag ctgagaaagt acaagagcat ttagctggta aaagcgagtt tgtaaagcaa
      241 gaagagcaac tcggaacggc gcatgcagta ctgcaagcga aagcggaact tgcaggtaaa
      301 gatggtgtga cgctcgttgt ttgtggggac acgcctttaa tcgaagctag tacgatggaa
      361 gctttactga aatatcacca tgaaaaacgt gcaaaagcaa ctattcttac aacggttatt
      421 gaagatccta caggttatgg tcgtattatt cgtgatgacc taggcattgt agaaaaaatc
      481 gtagaacata aagatgcaac agaaaaagaa caacggattt cggaaattaa cactgggaca
      541 tattgctttg ataataaagc tctttttgaa gcgttagaga atgtttctaa cgataatgtg
      601 caaggagaat attacttacc agatgttatt aagattttaa aagattcgga tgaagtcgtt
      661 gcggcttaca gaatggagtc ttttgaagag tcacttggag tgaacgaccg aattgcccta
      721 gctgaagcat ccagattaat gcaacgtcga attaacgaaa atcatatgcg taatggagta
      781 acgcttgtta atcctgaaaa cacgtatatt gatatagatg taaaaattgg tcaagataca
      841 gtaattgaac caggagttat gcttcatggg gaaactgtaa tcggtgatga ttgcgtggtt
      901 acaagcggct cggaaatcgt aaacagtgtt atcggtgaac gagtacacgt cagaacttct
      961 tctattttcg aaagtaaagt tggcgatgac gttcaaattg gcccatatgc gcacctaaga
     1021 ccagaatctg acattcacga tcatgtgaaa atcgggaact acgtcgaaac gaaaaaagca
     1081 gtggttggtg aaggaactaa attaccacat ttcatttaca tgggagatgc ggaaattggt
     1141 aaaaacgtca atgttggttg cggaagtatt gctgttaatt acgacggcaa aaacaaagcg
     1201 aaaaccatca ttggggataa tgtctttgtt ggctgtaatt caaacctgat tgcacctgtc
     1261 aaagtgggag atcgagcttt catagctgct ggttccacga ttacaaaaga tgttcctgac
     1321 gacgcgctag gcattgctcg tgcgaaacaa gacaataaac ttggttatgc gaaacatttg
     1381 aatcacggta aataatttcc atttgggaat tttaaaattt taataaaaaa tagtggaggc
     1441 tgattatgtc aaacgagtat tttgatccaa agttgaagat tttctcgcta aattctaatc
     1501 gtgaactagc tgaagagatt gcgaaagaag ttggtattga gttagggaaa tcaagcgtta
     1561 ctcattttag tgatggagaa atccaaatta acattgaaga aagtatccgt ggttgtcatg
     1621 tatatgttat tcaatcaacg agtaatcctg taaaccagaa tttaatggaa cttttgatca
     1681 tgattgatgc gttgaaacgc gcttccgcag caacaattaa tattgttatg ccttactatg
     1741 gttacgcacg tcaagaccgt aaagcaagaa gtcgtgaacc aatcacagcg aaattagtag
     1801 caaacttaat cgaaactgct ggtgcaacta gaatgattac acttgatatg catgcaccgc
     1861 aaattcaagg tttctttgat attccaatcg atcacttgaa tgcagttcgc cttctaagtg
     1921 actatttcag tgaacgtcat ttaggtgatg atctagtagt agtttcccct gaccatggtg
     1981 gagttactcg agctcgtaaa atggctgacc gtttgaaagc gccgattgct attattgata
     2041 agcgtcgtcc gcgtccaaac gtagctgaag taatgaacat cgttggtaat gtagaaggga
     2101 aagtttgtat cattattgat gatattattg atacagctgg aacaatcaca cttgctgcta
     2161 aagcattgcg tgaagcaggc gcaacaaaag tttacgcatg ttgttcgcac ccagttcttt
     2221 caggtcctgc tatgaaacgt attgaagaat cgccaatcga aaaattagtt gttacaaact
     2281 ccatcgctct tccagaagaa aaatggattg acaaaatgga acaattatct gttgcagctc
     2341 ttcttggcga agcaatcgtt cgcgttcatg aaaatgcttc tgtaagttct ttattcgaat
     2401 aaaatataaa acaggatgcc tcattgagac atcctgtttt ttgatttaat ttaattttcc
     2461 ccaagtagca ggacatgcta aataaaacca ttcatctaat ttaggagcat atcttttgag
     2521 ataatcaaga ttttgtacat aaaagcatga atttttatac acgataactt tctcttgctt
     2581 taatttagaa ataattctgc taacagctga gctatgtgcg ataccgcttg aatagcctaa
     2641 ctcctgcatt gttaaattat ccagtgtaat cttgatgcca tcaggagttt ctttaccata
     2701 cacataggtc aggattaaaa gttgaccgca aatagagccg agcttcccgt taatcgaaaa
     2761 atcattaaat ttggctaggc tgtatgaaac ttgtttttgt agggtttgga aaacatagaa
     2821 aaagtgcgta agattcttgc tcagtagttc ttttagttcg tttattttga taacgtatgc
     2881 ggtagcctgt tcgctaatga cttctaaatt ataatagcca accgatgttt ctgtatcgat
     2941 aaagccagac attataacga aagcaccttt atagtattgt aaattcatga tggtcccgtt
     3001 ctcactaata cttgtaagct ttgtaatacc atcatatagg aaaatacaat attcttgtgg
     3061 atcccattgg ttaaaaataa gttctttttt atgaaattgt tttggtttta tcccgttagt
     3121 ttctaaatat tttttgaatt cttctgcttg agcgttcatg tctcatcccc caatcgtttt
     3181 ttatcgccct tttttaaaat accctaaaaa cattaggcag taacaacaat tgttagctgt
     3241 tgaaagaaag tcacgctaaa taatattttt tacatatagg attttattat acaaattttg
     3301 atttcgcaaa agaaatgcat acatatttaa aaacggattt atttagatgt taaaattgaa
     3361 atagggttag tatatggttc cgatggttgc tcggagatat actaaccctt tttttgtagg
     3421 aataatatat gttagttgaa tttattgttt tttatgatgt ttttgattgt ttgtttttcg
     3481 gggaagtcca tgattagaat gcctaatcct cgaacttttt ccgatgttaa gttgagtacg
     3541 aactgctcta ctttgttgtt taatgctgca gcatactgac gaggtgtgaa tgttaatgaa
     3601 gtggcactaa tatggttaag aaacagtttg ttgtccgctt tagaagcttg ataagcagtc
     3661 tggacaatct ctttgaattt tgttttcaca ctcggaccat tgtagtcatc ttgaattact
     3721 tggttggatg cgccgaactg catgccgaat ttgtgtgaat taatgactaa tggctttttt
     3781 gtgtggttct ctgaaagtaa taatattttt ccgcggacat cttttaatgt agggatttta
     3841 ttgctcgtgt cagttctggg agtagtgtaa aaataatctt tgtaaatgtt gattaatggt
     3901 tggatccgat aatcaaaact atcgttgctg ttttgctcgt cttttaaacg cataataatg
     3961 gtttcttttg gatttttctt taaaaattga gtaatcgttt ctaatacacc tgaaagtgat
     4021 gcatttaaaa aaattggccc atggtaaatt ttgagattgt cttttgctct aatatcgatg
     4081 taccgtattc ctgcttctag ttgttggtac aatgacatcg tttgtgtttg agccagtggt
     4141 ttggttaatg tccacgtcat gtctccgtta tagctcatcg tatcatgtgt acctggtata
     4201 gagagtgctg ctaggctcgt tgtgtcaggt agagcggaca tccattgctt tgtagttaca
     4261 gagttcttta ttggcttatt ccagttatta agcgaatatg cttttccacc taatgggaaa
     4321 gtaaaaaagc ataaaataaa acagagtact aaaactaatg tgcgttgcaa ataattctta
     4381 tacaaaatgg ccccctcctt tgattagtat attcctatct taaagttact tttatgtcga
     4441 ggcattaaca tttgttaacg acgataaagg gacagcggga ctagaataaa gctataaagc
     4501 aagcatataa tattgcgttt catctttaga agcgaatttc gccaatatta taattatcaa
     4561 aagagaggag gggctaaaca gtatttggca ttattaggtt aaaaaatgta gaaggagagt
     4621 gaaacccatg aaaaaaataa tgctagtttt tattacactt atattagtta gtctaccaat
     4681 tgcgcaacaa actgaagcaa aggatgcatc tgcattccat aaagaaaatt taatttcatc
     4741 catggcacca ccagcatctc cgcctgcaag tcctaagacg ccaatcgaaa agaaacacgc
     4801 ggatgaaatc gataagtata tacaaggatt ggattacaat aaaaacaatg tattagtata
     4861 ccacggagat gcagtgacaa atgtgccgcc aagaaaaggt tataaagatg gaaatgaata
     4921 tatcgttgtg gagaaaaaga agaaatccat caatcaaaat aatgcagata tccaagttgt
     4981 gaatgcaatt tcgagcctaa catatccagg tgctctcgtg aaagcgaatt cggaattagt
     5041 agaaaatcaa cccgatgttc ttcctgtcaa acgtgattca ttaacactta gcattgattt
     5101 gccaggaatg actaatcaag acaataaaat tgttgtaaaa aatgctacta aatcgaacgt
     5161 taacaacgca gtaaatacat tagtggaaag atggaatgaa aaatatgctc aagcttatcc
     5221 aaatgtaagt gcaaaaattg attatgatga cgaaatggct tacagtgaat cacaattaat
     5281 tgcaaaattt ggtacggcat ttaaagctgt aaataatagc ttgaatgtaa acttcggcgc
     5341 aatcagtgaa gggaaaatgc aagaagaagt cattagtttt aaacaaattt actataacgt
     5401 gaatgttaat gaacctacaa gaccttccag atttttcggc aaagctgtta ctaaagagca
     5461 gttgcaagcg cttggagtga atgcagaaaa tcctcctgca tatatctcaa gtgtggcata
     5521 tggccgtcaa gtttatttga aattatcaac taattcccat agtaccaaag taaaagctgc
     5581 ttttgacgct gccgtaagtg ggaaatctgt ctcaggtgat gtagaactga caaatatcat
     5641 caaaaattct tccttcaaag ccgtaattta cggtggctcc gcaaaagatg aagttcaaat
     5701 catcgacggt aacctcggag acttacgaga tattttgaaa aaaggtgcta cttttaaccg
     5761 ggaaacacca ggagttccca ttgcctatac aacaaacttc ttaaaagaca atgaattagc
     5821 tgttattaaa aacaactcag aatatattga aacaacttca aaagcttata cagatggaaa
     5881 aatcaacatc gatcactctg gaggatacgt tgctcaattc aacatctctt gggatgaaat
     5941 aaattatgat cctgaaggta acgaaattgt tcaacataaa aactggagcg aaaacaataa
     6001 aagtaagcta gctcatttca catcgtccat ctatttgcca ggtaacgcaa gaaatattaa
     6061 tgtttacgct aaagaatgca ctggtttagc ttgggaatgg tggagaacgg taattgatga
     6121 ccggaaccta ccgcttgtga aaaatagaaa tatctccatc tggggcacta cactttatcc
     6181 g
//
LOCUS       DASEAA010000155         6147 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.155, whole genome shotgun sequence.
ACCESSION   DASEAA010000155 DASEAA010000000
VERSION     DASEAA010000155.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6147)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6147)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6147
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.155"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..82)
                     /locus_tag="U0342_002368"
     CDS             complement(<1..82)
                     /locus_tag="U0342_002368"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LacI family DNA-binding transcriptional
                     regulator"
                     /protein_id="HEM2423708.1"
                     /translation="MNKVTKIGDVAEKTGYSITTISRAING"
     gene            complement(227..1405)
                     /locus_tag="U0342_002369"
     CDS             complement(227..1405)
                     /locus_tag="U0342_002369"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-splicing ligase RtcB"
                     /protein_id="HEM2423709.1"
                     /translation="MLTLKGKYNEAKVFTDNVDDNTIGQIITLCNQPFAKGSKIRIMP
                     DTHGGKGCVIGTTMTIQDKIVPNLVGVDIGCGLYVVKLKPGKLKMDFDKLDKVIRERV
                     PSGSKTHDKPVDEFDLEGIVAPIHRGWVARSIGTLGGGNHFIEVNQGSDGIYLVIHSG
                     SRVLGKEIAEYHQEVAYKRLDILRKELKLDATAAKKRGNLEMANNLNGEREQVKLDYD
                     LSYVTGSDLNNYLNDMEIAQKFAARNRYVMAETILKAMKWDKIVVSAFDCVHNYIDID
                     NHMLRKGATSAQLGEQIIVPLNMRDGSILATGKGNADWNYSAPHGAGRMLSRSKAKAQ
                     ISLESYQAAMKDVWTTSVSKKTIDEAPKAYKSAKQLLVDVEDTMEIQEIIKPLYNFKA
                     "
     gene            complement(1753..2358)
                     /locus_tag="U0342_002370"
     CDS             complement(1753..2358)
                     /locus_tag="U0342_002370"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2423710.1"
                     /translation="MTNNHYYTNDETIKHNRKTWQVMLKGFNMSFTSDNGVFSKNTVD
                     FGSRLLIESFELETKIGKILDVGCGYGPMGLTVAKAFPDSQIEMVDVNLRALELAKEN
                     AEINKITNTHIYESSVYDSVTANDYQAIISNPPIRAGKRIVHAILEGAYDHLQETGEL
                     WIVIQKKQGGPSAEKKMEEVFGNVETVAKDKGYFIFKSVKN"
     gene            complement(2501..2863)
                     /gene="rplL"
                     /locus_tag="U0342_002371"
     CDS             complement(2501..2863)
                     /gene="rplL"
                     /locus_tag="U0342_002371"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L7/L12"
                     /protein_id="HEM2423711.1"
                     /translation="MALNIEEIIASVKEASVLELNDLVKAIEEEFGVTAAAPVAVAAA
                     GGAAAEQTEFTVELASAGDSKIKVIKVVREITGLGLKEAKELVDNAPKALKEGVAKEE
                     AEEIKAKLEEVGANVEVK"
     gene            complement(2942..3442)
                     /locus_tag="U0342_002372"
     CDS             complement(2942..3442)
                     /locus_tag="U0342_002372"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463781.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L10"
                     /protein_id="HEM2423712.1"
                     /translation="MSKVLEAKQSAVEEIKTKLSASASTVIVDYRGLNVGEITELRKQ
                     LRDAGIEFKVYKNSLTRRAVEANGYEGLEGALTGPNAIAFSNEDVVAPAKILNDFAKD
                     HEALEIKAGVIEGKVASLEEIKALATLPSREGLLSMLCNVLQAPVRGLAIATKAVADQ
                     KEGQEA"
     misc_feature    complement(3498..3641)
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00557"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L10 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00557"
     gene            complement(3690..4379)
                     /gene="rplA"
                     /locus_tag="U0342_002373"
     CDS             complement(3690..4379)
                     /gene="rplA"
                     /locus_tag="U0342_002373"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L1"
                     /protein_id="HEM2423713.1"
                     /translation="MAKKGKKYQDALKQIDANKVYTAEEAVELAKKIDFAKFDATVEV
                     AFRLGVDPKKADQQIRGAVVLPNGTGKTQRVLVFAKGEKAKEAEAAGADYVGESEFVE
                     KINQGWFEFDVIVATPDMMGEVGKLGRVLGPKGLMPNPKTGTVTMDVTKAVNEIKAGK
                     VEYRVDKAGNVHAAIGKVSFDAAKLVENFRTVNDVLQKAKPAAAKGTYVKNLSVTTTF
                     GPGIKVDPASL"
     gene            complement(4419..4844)
                     /gene="rplK"
                     /locus_tag="U0342_002374"
     CDS             complement(4419..4844)
                     /gene="rplK"
                     /locus_tag="U0342_002374"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L11"
                     /protein_id="HEM2423714.1"
                     /translation="MAKKVIKEVKLQIPAGKANPAPPVGPALGQAGVNIMGFCKEFNA
                     RTADQAGLIIPVVITVFEDRSFTFITKTPPAAVLLKKAAKVEKGSGEPNKTKVASVTR
                     AQVQEIAETKMPDLNAANVESAMLMVEGTARSMGITIQD"
     gene            complement(4971..5441)
                     /locus_tag="U0342_002375"
     CDS             complement(4971..5441)
                     /locus_tag="U0342_002375"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="immunity 63 family protein"
                     /protein_id="HEM2423715.1"
                     /translation="MDKAKQIYLEFKREADFLELDFPLFLGDGPGFGELCMDYSEQDG
                     YMLYGYERGKRNSEFKTTDFDEFKYEVFLHICWYMGMEFELRHRKEDMRHDDNILEAD
                     TRKIAFEKTLQLLKKVNPAWIDKAAQGYTAYLNLWRENKNVYFDKEAMEFKVNS"
     gene            complement(5496..6029)
                     /gene="nusG"
                     /locus_tag="U0342_002376"
     CDS             complement(5496..6029)
                     /gene="nusG"
                     /locus_tag="U0342_002376"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcription termination/antitermination
                     protein NusG"
                     /protein_id="HEM2423716.1"
                     /translation="MEKNWYVVHTYSGYENKVKANLEKRVESMGMSDKIFRVIVPEEE
                     ETEVKNGKTKTIKRKVFPGYVLVEIVMTDDSWYVVRNTPGVTGFVGSAGSGSKPTPLL
                     PEEADRILKSMGMVEKRAEADFEIGETVMVKEGPFADFSGKVDEMDNDKGKAKVMVNM
                     FGRETPVEVDFNQIEKL"
BASE COUNT         1680 a         1351 c          993 g         2123 t
ORIGIN      
        1 taccattaat tgctcgagaa atagtagtta tagaatagcc cgttttctct gctacatctc
       61 caattttcgt cactttattc atatctatct ccctaaaatt tcaaattcat ctattttaat
      121 ttattatatc agattacaga aaaagtgaga acttatttcc ttataacgct actctaacaa
      181 caaaaagaag aagcagcaaa tagtaatata tgctgcttct tttccatcat gctttgaaat
      241 tgtataacgg tttaattatt tcttgaatct ccatcgtatc ttctacatca acaagcaatt
      301 gtttagctga tttataggct tttggagctt catcaattgt ttttttagaa acagaagtag
      361 tccaaacgtc tttcattgct gcctgatagc tttctaaact gatttgcgct tttgctttag
      421 aacgacttag catccttccc gccccgtgcg gcgccgagta attccaatct gcatttcctt
      481 tacccgttgc aagaatgctg ccatcgcgca tattaagcgg aacgataatt tgctctccaa
      541 gctgagcaga tgtcgcacct tttctaagca tgtggttatc aatatcaatg taattatgca
      601 cacaatcaaa cgctgaaaca actattttat cccacttcat cgcttttaaa atagtttctg
      661 ccatgacgta acgattacgc gctgcaaatt tttgtgcaat ttccatgtca tttaaataat
      721 tgtttaaatc agagcccgtc acataggata agtcataatc caatttcact tgctcacgct
      781 caccgttcaa gttgttggcc atttctaaat tgccgcgttt tttcgcagca gttgcgtcta
      841 atttcaattc tttacgcaat atgtctaatc ttttataagc tacttcttgg tggtattctg
      901 caatttcttt accaagcacc cgacttccac tatggattac aaggtaaata ccatcagaac
      961 cttgattcac ttcaataaaa tggttcccgc caccaagcgt ccctatactt ctagctaccc
     1021 agccgcgatg aattggcgca actatacctt ccaaatcaaa ttcatctaca ggcttatcgt
     1081 gtgttttgct tccagatggc acccgttcgc gaataacttt atctagctta tcaaaatcca
     1141 tttttaactt gccaggtttt agttttacta cgtacagtcc gcaaccgatg tccactccaa
     1201 ccaaattcgg tacaatttta tcttgaattg tcattgtcgt tccaatcaca cagcctttac
     1261 caccgtgcgt gtcgggcatg atccgaatct tactaccctt cgcaaacggt tgattacaca
     1321 gcgtaataat ttgcccgatg gtattgtcgt ccacattatc tgtaaaaact ttcgcttcgt
     1381 tatattttcc ttttaatgtt agcatttcta ttcctcattt tctgtttaat agagaaatga
     1441 aagtctccac ttctcttcct agctgttaaa attctccagt tctcctattg tcattcgact
     1501 cacttctttc aaatttattt ttaggtaaaa aaaaaagtcc ctcaatcaag aaagattgaa
     1561 ggacgtaact tttaacggac gctaccttga aaagacaccg gttggctatg caggaacgtt
     1621 aaagaaatac ctattatctt ctgtcttgat tggttgtttt tttctagtat atttttcatt
     1681 ctaagcatat ccctcagtcc tttcttggta aaatgtattt ctatattagc acgtttccgc
     1741 acttgataca acttaatttt taacgctttt gaaaataaaa tagcccttat cttttgccac
     1801 tgtttcaacg ttgccgaaaa cttcttccat tttcttttca gcagatgggc cgccttgttt
     1861 cttttgaata acaatccaaa gttctccggt ttcttgcaag tgatcgtaag caccttctaa
     1921 aatcgcatga actattcttt tccctgcacg aattggcgga ttactaataa tcgcttggta
     1981 atcgttcgca gttacgctat cataaaccga actttcatag atatgcgtat tcgtaatttt
     2041 attgatttcc gcattttctt tcgcaagttc cagtgcgcgc aaattaacgt ccaccatttc
     2101 aatttggcta tcagggaacg ctttcgctac cgttaacccc atcggaccat agccacaacc
     2161 aacatccaag atttttccta ttttcgtttc taactcaaaa gactcaatca ataatctcga
     2221 accaaaatcg accgtatttt tggaaaacac gccattgtca cttgtaaaac tcatattaaa
     2281 accttttaac atcacttgcc atgtttttcg gttgtgttta attgtttcgt cgtttgtgta
     2341 gtaatgattg ttagtcaaga accgcacctt cctttcgtat ctctagctat tttagcataa
     2401 aatcttactc ggatgtagca tttttggtaa ctcatcttaa acttgattaa ttgcaataaa
     2461 aaagacctta gataacaagt atctaaggtc tttaagttaa ttacttaact tctacgttag
     2521 cgccaacttc ttcaagttta gctttgattt cttcagcttc ttctttagca acgccttctt
     2581 taagagcttt aggagcgtta tcaactaatt ctttagcttc ttttaagcca agaccagtga
     2641 tttcacgaac cactttgatt actttgattt tagaatctcc agcagaagct agttctacag
     2701 tgaattcagt ttgctcagca gcagcgccac cagcagcagc tacagctaca ggtgctgcag
     2761 cagttacgcc aaattcttct tcgattgctt ttactaaatc gttaagttct aatacagatg
     2821 cttcttttac ggaagcaatg atttcttcaa tgtttaaagc cattttgaaa ttcctccaat
     2881 aatataattt tttcggattt aaccgagatt tgtttgtagg gtttcccctg ggtagaacag
     2941 attatgcttc ttgtccttct ttttggtcag caacagcttt agtagcgata gcaagaccgc
     3001 gaactggagc ttgaagtacg ttgcaaagca tagatagcaa tccttcgcgt gatggaagtg
     3061 ttgcaagtgc tttaatttct tcaagagaag caactttacc ttcaataaca ccggctttga
     3121 tttctagtgc ttcatgatct ttagcgaaat cgttaagaat tttcgcaggc gcaactacgt
     3181 cttcattact gaatgcgatt gcgttaggac cagttagtgc tccttctaaa ccttcataac
     3241 cgttagcttc aacagcacgg cgagttagtg agtttttgta aactttaaac tcaataccag
     3301 catcacgcaa ttgtttacgt aattcagtga tttcgccaac gtttaagccg cggtaatcaa
     3361 caattactgt agacgcacta gctgataatt ttgttttaat ttcttctact gcactttgtt
     3421 tagcttcaag aactttactc atttttccac ctccgtccaa caattaaatc taattaaaca
     3481 gacacaagtt ccgtttgatc agcaacaaaa aacctctgac accgtagaca tcagaggttt
     3541 ttgtaaaatg cacgcggacg cacacttcaa aagaaatccc tcgggtggca aatttaagcg
     3601 ataaacgcgc caactgtcta cggtaaggat atttgattgt ttcaactagc ctatcttatc
     3661 aaaagacaag gggctggtca agttaaattt tataagctag ctgggtcgac tttgattcca
     3721 ggtccgaaag tagttgttac ggaaagattt ttcacgtaag tacctttcgc agcagcaggt
     3781 tttgcttttt gtagaacgtc attcacagta cggaagtttt ctactagttt agcagcatca
     3841 aaagatactt taccgattgc agcgtggacg ttaccagctt tatcaacacg gtattctact
     3901 ttaccagctt taatttcgtt aactgcttta gttacgtcca tagttactgt accagtttta
     3961 gggtttggca ttaaaccttt tggtccaagg acacggccta atttaccaac ttcacccatc
     4021 atgtcaggtg tagcaacgat aacgtcaaat tcaaaccaac cttggttgat tttttcaacg
     4081 aattcagatt caccaacgta atcagctcca gcagcctcag cttctttagc tttttcacct
     4141 tttgcgaata ctaatacgcg ttgagtttta ccagtaccgt ttggtaatac aacagcaccg
     4201 cggatttgtt ggtccgcttt tttagggtca acgccaagac ggaatgctac ttcaacagtt
     4261 gcatcgaatt tagcgaagtc aattttttta gcaagttcaa ctgcttcttc tgcagtgtaa
     4321 actttgtttg catcaatttg ttttaaagca tcttgatact ttttgccttt cttagccatt
     4381 tcttttcctc cttaattgtc aaattgtgaa acacacgatt agtcttggat agtgataccc
     4441 atagaacgtg cagtaccttc aaccattagc attgcagatt caacatttgc agcgttaagg
     4501 tctggcattt ttgtttcagc aatttcctgt acttgagcgc gagttacaga tgcaactttt
     4561 gttttgtttg gttcaccgga tcctttttcc actttagctg cttttttaag taatacagct
     4621 gctggtggag ttttagtgat gaacgtaaac gaacggtctt caaatacagt gatcacaaca
     4681 ggaataataa gaccagcttg atcggctgtg cgagcattaa actctttaca gaatcccatg
     4741 atgtttacgc cagcttgacc taatgcaggt ccaactggag gtgcaggatt tgctttacct
     4801 gctggaattt gaagtttaac ttctttaatc actttttttg ccacgagaca tacctcctta
     4861 agtccgtgat gtggttgact ggggctgata tttcccctcc cacgttaaaa catacgtcaa
     4921 aaacgtactt atatatgata ccattttaaa tgtgtagttg caagattatt ttatgaattt
     4981 actttaaatt ccattgcttc tttatcgaaa taaacatttt tattttcacg ccataaattc
     5041 aaatacgccg tgtaaccttg tgctgcctta tctatccatg ccggattcac tttttttagt
     5101 agttgtaatg ttttttcaaa agcgattttt ctggtgtctg cttctaaaat attatcgtcg
     5161 tgccgcatgt cttctttccg gtggcgcagt tcaaactcca ttcccatata ccaacaaata
     5221 tgcaagaaaa cctcatattt aaattcgtca aagtctgttg ttttaaattc actgttacgt
     5281 ttgccacgtt cataaccata aagcatgtaa ccatcttgtt cactataatc catacaaagc
     5341 tcgccaaaac ctggcccatc acctaagaac aatgggaaat cgagttctaa aaaatcggct
     5401 tctcgtttaa attccagata aatctgcttt gctttgtcca ttttgtcgcc tccctaataa
     5461 aacaacctcc acaaataatg tagaggttgc acattttaaa gtttttcgat ttggttgaaa
     5521 tccacttcga ctggcgtttc acgtccgaac atgttaacca tgactttcgc tttacctttg
     5581 tcgttgtcca tttcgtccac tttaccggaa aagtcagcga atggtccttc tttgaccata
     5641 actgtttcac caatttcaaa gtcagcttct gcacgttttt caaccatgcc catgctttta
     5701 agaatgcgat ctgcttcttc tggaagtaat ggtgttggct ttgatccaga acctgctgaa
     5761 ccaacgaagc ctgtaacacc tggagtatta cgaactacat accaagaatc atctgtcata
     5821 acgatttcta ctagtacata accagggaaa actttacgtt taattgtttt tgttttacca
     5881 tttttcactt ctgtttcttc ttcttccggt acgataacac ggaagatttt atctgacatg
     5941 cccattgact ctacacgttt ttctaagttt gctttgactt tattttcata accggagtaa
     6001 gtatgaacta cataccaatt tttttccatt atttagttgg cagcaatcct attttgccgc
     6061 catcctcctt ttagtataat ccaaaataaa aaacccgaaa gttgtacggg ttttgtctca
     6121 agtaatagta tatcattatc tttgtaa
//
LOCUS       DASEAA010000156         6123 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.156, whole genome shotgun sequence.
ACCESSION   DASEAA010000156 DASEAA010000000
VERSION     DASEAA010000156.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6123)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6123)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6123
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.156"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..511)
                     /gene="raiA"
                     /locus_tag="U0342_002377"
     CDS             complement(<1..511)
                     /gene="raiA"
                     /locus_tag="U0342_002377"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466034.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome-associated translation inhibitor RaiA"
                     /protein_id="HEM2423717.1"
                     /translation="MLKYNIRGENIEVTEPIRDYVEKKIDKLERYFTETPDANVHVNL
                     KVYSDKNAKVEVTIPLPNLVLRAEETSGDLYASIDLIVDKLERQIRKHKTKVNRKFRD
                     KGAERDYFAYSDVNGSTPPEENEGDFDLEIVRTKQFSLKPMDSEEAVLQMNLLGHSFY
                     VYTDAETNGT"
     gene            complement(706..1362)
                     /locus_tag="U0342_002378"
     CDS             complement(706..1362)
                     /locus_tag="U0342_002378"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466035.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComF family protein"
                     /protein_id="HEM2423718.1"
                     /translation="MTNCLLCFQPVRQSASWEISWLFEPLPICCDACLAGFEKLTGLL
                     CKNCSKESLDDVCEDCRSRTHFLDSNKSIYRYNDFAKDYMKKFKFQGDYEIGAIFKKE
                     LRNFLSEKKEKIVPIPVSEMRKVERGFNQTTAILKQSGILYEELLAKKHTEKQSKKTK
                     RERLASEQTFYFSGKEIYESTEVILFDDIYTTGSTLNLAAQILKEAGVYKVSALTIFR
                     "
     gene            complement(1355..2674)
                     /locus_tag="U0342_002379"
     CDS             complement(1355..2674)
                     /locus_tag="U0342_002379"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466036.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase"
                     /protein_id="HEM2423719.1"
                     /translation="MDIFPGRLYQEREIESKEGLREVVAIESNKCFRCGNTDVQLFGK
                     MSCALCKREDCIYCRNCIVMGRVNSCQKLYYQHARLLLETKEVLLRWEGALSAGQRKA
                     SNAIVVNLKAKTDMLLWAVAGSGKTEMMFEGMDWALRQGFRICVASPRVDVCLELLPR
                     LKEAFPSIDIVCLYGDSKDNYQGEQFVIATTHQLIRFYEAFQVIFIDEVDAFPYAKDP
                     FLEYAVMKARTKEGSTIIITATPEKKWQEECVRGKRNFVKIPGRYHRKKLPVPRTCWI
                     GPWKKNLAKGKITPKLIQWMNDVKKKDQPALIFFPEIDAMNKFANALENKGYASPVTV
                     HSADELRKEKVEWLRKGKIKLLLTTTILERGVTFTDVQVAVFGSEARIFTEAALVQIS
                     GRAGRKLSHPTGDVCFFHYGKTIEMKQAISHIQKMNQQGVIEGMLDD"
     gene            complement(2870..3721)
                     /locus_tag="U0342_002380"
     CDS             complement(2870..3721)
                     /locus_tag="U0342_002380"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DegV family protein"
                     /protein_id="HEM2423720.1"
                     /translation="MNEKIAVVTDSTTYLPNEVKEQLRINVVPLSVIIDGKSYREGEE
                     LSAADFYRKVKEAENFPTSSQPAPGDFIHLFEQLKEQGFDTVISIHLSSGISGTFQNA
                     ASAGELIEGLNVVAYDSELSCMAQGMFVVKAAEMALANEPLDQIIQKLDKIKQAQDAY
                     FMVDDLNNLQRGGRLNGAQALVGSLLQIKPILHFNDKQIVLFEKVRTQKKALKRIEDI
                     LQKAVQNKTAEKAYVIHGNDLAKGEAWLAQLEAKFPEVTFELSYFGPVIGTHLGEGAL
                     GLTWSIK"
     gene            complement(3742..4428)
                     /gene="degU"
                     /locus_tag="U0342_002381"
     CDS             complement(3742..4428)
                     /gene="degU"
                     /locus_tag="U0342_002381"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466038.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator DegU"
                     /protein_id="HEM2423721.1"
                     /translation="MALKIMIVDDHQLFREGIKRILELEDSFEVVAEAENGKNIVAKV
                     REYKPDIVLMDINMPTVNGLDATEMLVRQFPSIKVIVLTIHDTDEYVTEALRAGAVGY
                     LLKEMDAHELVEAVKIVDNGGAYIHPRVAIKLIREYRHLASTNTSQGVYGYQQPEVKM
                     PLHILTHRECEVLQLLTDGKSNRGIGETLFISEKTVKNHVSSILQKMKVNDRTQAVVT
                     AIKHGWVYIR"
     gene            4813..5448
                     /locus_tag="U0342_002382"
     CDS             4813..5448
                     /locus_tag="U0342_002382"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466039.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YigZ family protein"
                     /protein_id="HEM2423722.1"
                     /translation="MLDHYLTIHSDGKHEIIIEKSRFICHIKRATTETEAQTFIQEIK
                     KEHRDATHNCSAYIIGENDQYQKAHDDGEPSGTAGVPMLEVLKKKSLKNVAVVVTRYF
                     GGTKLGAGGLVRAYGNAVSEAIQAIGIVECKLATIVECSFAYPLLGKIENALELKAYQ
                     IDKKEFTEKVVLHIFVDNDELQDFFNWITEISNGQLEYKEGPQKYREKDVT"
     gene            5450..5995
                     /locus_tag="U0342_002383"
     CDS             5450..5995
                     /locus_tag="U0342_002383"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003742943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423723.1"
                     /translation="MSTNVFIQLPDTILTKRTILKKTSIADATTLFDIWSDDEVAQFM
                     NIEKFSTILQAEEMIQAIENEPNACRYTIFTTDDSLHAIGSLGINDINKTNQTIEIGY
                     ELAKSHWRQGFMFEILTTFLTTVKPYLPYKVLTAKVLPDNVASIKLLKKLGFELTTTG
                     QELDLHSGRICEISNYRMLLK"
BASE COUNT         1838 a         1283 c          938 g         2064 t
ORIGIN      
        1 tggtaccgtt tgtttccgca tcagtgtaaa catagaaact atgacccagc aaattcattt
       61 gtaaaacagc ttcttcacta tccatcggtt ttaatgaaaa ttgttttgtt cttacaattt
      121 caagatcaaa atctccttca ttttcttctg gtggggtgct gccgttaaca tcagaataag
      181 caaaataatc tctttctgcc cctttgtcac ggaacttgcg gtttactttt gttttatgtt
      241 tgcgaatttg tctttctaat ttatctacaa ttaagtcgat gctagcatat aaatctccac
      301 ttgtttcttc tgcacgtagc acaagatttg ggagcggaat ggtcacttca actttcgcat
      361 ttttatcgga atatactttt aaattaacat gaacgttagc gtctggagtc tccgtaaaat
      421 atcgttctaa tttatcgatt ttcttttcaa cataatctcg gatcggttct gttacttcaa
      481 tattttctcc acgaatgttg tacttaagca tagcaattcc tcctttgaaa taaaacaaaa
      541 taacgataaa gaagagtatt cttcttaccc ttagtctacg tgaaaacgat gtgttttgca
      601 aacatttgca caaagagcta agaagcttac attcacttat ctttatttag tattttattc
      661 cactaatacc gcttccgcaa acctctttta gaagataaat atcatctatc tgaatatcgt
      721 tagcgcactc accttgtaca ctccggcttc ttttaagatt tgcgctgcta ggttaagtgt
      781 gcttcctgtg gtgtaaatat catcaaataa tattacttct gttgactcat aaatttcttt
      841 tccagaaaag taaaatgttt gttcagatgc taatcgttcc ctctttgttt ttttagattg
      901 cttttctgta tgctttttgg ctaaaagctc ttcatatagg atgccagatt gttttaatat
      961 cgcggttgtt tgattaaatc cacgttctac tttccgcatc tcgcttactg gaattggtac
     1021 aatcttctct ttcttttctg atagaaagtt ccttaattcc tttttgaaaa tagcccctat
     1081 ttcataatcc ccttgaaatt taaacttctt catatagtct ttggcgaaat cattgtaacg
     1141 ataaatggat ttattactat ctaaaaaatg tgttctactt cggcaatcct cgcagacatc
     1201 atctaaggat tctttactac aatttttaca tagtaagcca gttagttttt caaatcccgc
     1261 taagcatgca tcacaacaaa ttggcaaagg ttcaaataac caacttattt cccaactggc
     1321 gctttgccta actggctgaa aacaaagtaa gcaattagtc atctagcatc ccttctatca
     1381 ctccttgttg attcattttt tgaatgtggg agatagcttg cttcatttct attgttttac
     1441 cgtaatgaaa aaagcaaacg tctccagtcg gatgagataa tttcctacct gcccttcctg
     1501 aaatttgaac taaagcagct tccgtaaaaa tacgagcttc acttccaaac accgctactt
     1561 gcacatctgt aaaagtaaca cctctctcta aaattgtagt tgttaataac agcttgattt
     1621 tcccttttcg tagccattcc actttctctt tacgcaattc atcggctgaa tgaactgtca
     1681 ctgggctggc atagccttta ttttcaagtg catttgcaaa tttattcata gcatcaattt
     1741 ctggaaagaa aattaaagcc ggctgatctt tcttcttcac atcattcatc cactggataa
     1801 gcttaggagt tattttccct ttagctagat tctttttcca cgggccaatc cagcacgttc
     1861 tcggcacagg cagtttcttt cggtgatatc gtccgggaat tttcacaaaa ttacgttttc
     1921 ctcttacaca ctcttcttgc cactttttct ctggggttgc tgtgattatt attgttgaac
     1981 cttcttttgt tctggctttc ataacggcat attctaaaaa aggatctttc gcataaggaa
     2041 atgcatctac ttcatcaata aaaataactt gaaacgcttc ataaaagcga ataagctgat
     2101 gggtcgtcgc tatcacgaac tgctctcctt ggtagttatc ttttgagtct ccatatagac
     2161 aaacaatatc tatgctaggg aaagcttctt ttaaacgtgg aagaagctct aaacaaacat
     2221 ccactctcgg agaagcaaca caaattctaa aaccttgtcg caaagcccag tccattcctt
     2281 caaacatcat ctccgttttt ccagatccgg caactgccca tagcaacata tccgtttttg
     2341 cttttaaatt aacgactatc gcgttggatg cttttcgctg tcccgctgac aaagctcctt
     2401 cccacctcaa taatacttcc tttgtctcta gtaataacct agcatgttga tagtataatt
     2461 tttggcaact atttactcgt cccatcacaa tgcaatttct gcaataaata caatcctctc
     2521 tcttacataa tgcacaggac attttgccaa ataactgcac atccgtattt ccacatcgaa
     2581 agcatttgtt tgattctatt gctactactt ctcttaagcc ctctttactc tctatttcac
     2641 gttcttgata aagccttccc gggaagatgt ccatctgtat tcacctcccc ttagttatac
     2701 actttttctt tttttattgc agaaacgaaa tccttgtttt cgaccgcata cttataaaca
     2761 aaacaagtat ttcttttaga cgaaaacgag tatttttgcc atccaaaact actgaaaaaa
     2821 caaatttagt ctccatgaaa aaaatctcca gcttttagct ggagattttt tattttattg
     2881 accaagttaa gccaagcgca ccttcaccca agtgagttcc aatgactgga ccaaaataac
     2941 ttaattcaaa tgttacttct gggaatttcg cttctagttg tgcaagccat gcttcaccct
     3001 tcgctagatc attgccatga atgacataag ctttttctgc cgttttgttt tgaacggctt
     3061 tttgaagaat atcttcaatt cgtttcaatg cctttttttg cgttctaacc ttttcaaaga
     3121 ggacaatttg tttatcatta aaatgaagaa tcggtttaat ttgaagcaag ctaccaacaa
     3181 gggcttgtgc tccattcaaa cggccgccac gctgtaaatt atttaaatca tctaccataa
     3241 aataagcatc ttgtgcctgt tttattttat ctagtttttg gataatctgg tccagcggct
     3301 catttgccaa agccatttca gctgctttaa ctacaaacat tccttgcgcc atgcaagaaa
     3361 gctcagaatc ataagcgacg acatttagcc cctcaattaa ctctcctgct gaagccgcat
     3421 tctgaaacgt tccactaata ccgcttgata gatgaatact aattacagta tcaaaacctt
     3481 gttctttcag ctgttcgaac aagtgaatga aatctcctgg ggcaggttga gaggaagttg
     3541 ggaaattctc agcttctttt acttttctgt aaaaatcagc cgcagataac tcctcacctt
     3601 cacgataaga ttttccgtca attattacag aaagtggcac gacattaatt cgtagctgct
     3661 ctttcacttc atttggcaaa taagttgtgc tgtcagtaac cactgctatt ttttcgttca
     3721 tatagtcccc ctgatatttc tttagcgaat atatacccag ccgtgcttga ttgccgttac
     3781 caccgcttga gtcctatcat tcactttcat tttttgtaaa atactactta catggttttt
     3841 tactgttttt tcactaatga aaagtgtctc cccaattccg cggttacttt ttccatcggt
     3901 aagaagttgc aatacctcgc actctctatg cgttaagatg tgtagtggca ttttgacttc
     3961 aggttgttgg tagccataaa caccttgaga agtgttagtg cttgctaaat ggcggtattc
     4021 acgaattaat ttaatcgcta cacgtggatg aatatacgcg cctccattat caacaatttt
     4081 tacagcttct acaagttcat gggcatccat ttcttttaat aaataaccga ctgctccagc
     4141 tctaagcgct tctgttacat attcatctgt atcatgaata gtcaagacga ttactttgat
     4201 gctaggaaat tgacgtacta gcatttcagt tgcatctagt ccgttgacag ttggcatatt
     4261 aatatccatt aaaacaatat ctggtttata ttcgcgaact tttgctacga tatttttacc
     4321 attttcagct tccgctacga cctcaaaaga atcttccaac tctaaaattc gcttgatacc
     4381 ttcgcgaaac aactgatgat catctacaat catgattttg agtgccataa tgactactcc
     4441 tccttcactt atctaatttc accaagcctc tttgcaatcg aaaacatcat cctttttaag
     4501 tagcaaaacc gcttaacctt ataatccctg ccataaaatt ggcaattaaa catttctctt
     4561 ttaagtacta tttactcaaa cttacctatt ttcaacacaa actatacctt gattatactg
     4621 catagcccaa gaaaattact cctatatgcc tataaaatgt aattgaaaac cagtctaaag
     4681 taatagtagt ttttattata acacgaattt gccgtcactt cacccactgc acttagaaaa
     4741 atatctatac aatcgctttg ctttcggata aaataaaagc aggctaaatg catcaactta
     4801 tggaggttcc ttatgttgga tcattattta accatccata gcgatggaaa acacgaaata
     4861 attattgaaa agtcccgctt tatctgccac attaagcgag ctacaacaga aactgaagca
     4921 caaaccttta ttcaagaaat caaaaaagag catcgtgatg ctacccataa ttgttctgct
     4981 tatattatag gagaaaatga ccaatatcaa aaagcgcatg acgacggaga accaagtgga
     5041 acagctggcg ttccaatgct agaggtctta aaaaagaagt ctttaaaaaa tgttgctgtt
     5101 gtagttactc gttattttgg aggaacaaaa ctaggtgcag gcggcttagt ccgcgcatat
     5161 ggtaatgctg ttagtgaagc tattcaagca atcggtattg tcgaatgcaa actagccact
     5221 attgttgaat gctcttttgc ttatccactt ttaggaaaaa tcgaaaatgc gcttgaacta
     5281 aaagcatatc aaatcgacaa aaaagagttc actgaaaaag tagtacttca tatttttgtt
     5341 gataacgacg aactgcaaga ttttttcaac tggatcactg agatttcaaa tggacaactt
     5401 gaatataaag aaggaccaca aaaatataga gaaaaggatg tcacttagta tgtccacaaa
     5461 cgtatttatc caattaccag atactattct tactaaacga actatattaa aaaaaacctc
     5521 tattgcagat gctactacat tatttgatat ttggtctgat gatgaggtag ctcagtttat
     5581 gaacatcgaa aaattctcta ctattcttca agcagaagaa atgattcaag caattgaaaa
     5641 tgaaccaaat gcttgcagat acaccatttt cacaactgat gattctttac atgcaattgg
     5701 ttcgcttgga attaatgata ttaacaaaac gaaccagaca atcgaaattg gctatgaact
     5761 agcaaaaagt cattggcgcc aaggttttat gtttgaaatt ttgacaacat ttttaaccac
     5821 tgtaaagccc tatcttccct ataaagtgct tacagcaaaa gttctaccag ataatgtagc
     5881 ttcaatcaaa ctactgaaaa agcttggttt tgagcttacc acaactgggc aagaactaga
     5941 tttacattct ggtaggattt gtgaaatcag taattatcga atgctactga aataggacaa
     6001 atattacatt tttgaaagat atcatctttt ttgtattttt tttcgagtaa tttctgtata
     6061 ataacatcaa agtttaaaaa ttaaagaaac cgtaaatcgg gcgtaacatt ctttaatgca
     6121 aca
//
LOCUS       DASEAA010000157         6019 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.157, whole genome shotgun sequence.
ACCESSION   DASEAA010000157 DASEAA010000000
VERSION     DASEAA010000157.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6019)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6019)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6019
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.157"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..869)
                     /gene="hemH"
                     /locus_tag="U0342_002384"
     CDS             complement(<1..869)
                     /gene="hemH"
                     /locus_tag="U0342_002384"
                     /EC_number="4.98.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465735.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferrochelatase"
                     /protein_id="HEM2423724.1"
                     /translation="MTKKVGLLVMAYGTPYKDEDIERYYTDIRHGHKPSEEMIADLRG
                     RYHAIGGLSPLAKITEAQAYGLEKALNESQDEVEFKAYIGLKHIEPFIEDAVEAMHKD
                     GIEEAISIVLAPHYSSFSVEAYNKRAKDAADKLGGLRIKAINDWYKQPKFIQMWADRI
                     NETAKQIPADELLDTVLIVSAHSLPEKIKQHNDPYPDQLQETADFIFEKVVVPHYALG
                     WQSEGKTGEPWLGPDVQDLTRELYGREKYKHFIYTPVGFVAEHLEVLYDNDYECKVVT
                     DEVGAIYHRPPMP"
     gene            complement(866..1927)
                     /gene="hemE"
                     /locus_tag="U0342_002385"
     CDS             complement(866..1927)
                     /gene="hemE"
                     /locus_tag="U0342_002385"
                     /EC_number="4.1.1.37"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465736.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uroporphyrinogen decarboxylase"
                     /protein_id="HEM2423725.1"
                     /translation="MTKITNDLFLKAARKEQVDRIPVWYMRQAGRSQPEYRKLKEKYS
                     LFEITHQPEICAYVTKLPVDQYGVDAAILYKDIMTPLPGMGVDVEIKSGIGPVIHNPI
                     RSFQDVEKLTMFKPEIEVPYVLDTIKLLADDMLDVPLIGFAGAPFTLASYMIEGGPSK
                     NYHQTKSFMYREPEVWAILMEKLGRMTANYLIAQINAGASAVQLFDSWVGALSRADYA
                     EYIRPVIEMIVREVKAVHPTTPIIMQAVGASHLLAEWETMPLDVVGVDWRETITSARK
                     KVPTKAIQGNLDPSTLLAPEKCLKEANRILQEGVLEPGYIFNLGHGVFPEVPPEMLKK
                     LTNYIHERSEILLKKDDIK"
     gene            2124..2627
                     /locus_tag="U0342_002386"
     CDS             2124..2627
                     /locus_tag="U0342_002386"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465737.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="antibiotic biosynthesis monooxygenase"
                     /protein_id="HEM2423726.1"
                     /translation="MKKVFITTGTEHYLRQLMANYIGGNVTLLQNFSQSLLYQESTGE
                     KLFQEGAEYRVLQSSGSLKGFGVVVFEYIHLRDEEIPIFLQMYQRASLHFSETPGLQS
                     TKLTKAMNMNKFLIISFWDSEVFFHDWKKTPLSKEITNIMKKNNTQSGFSHEDIYHYP
                     EFSHDAK"
     gene            complement(2666..3889)
                     /locus_tag="U0342_002387"
     CDS             complement(2666..3889)
                     /locus_tag="U0342_002387"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465738.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423727.1"
                     /translation="MKMIFDSKALWKERFSAYTTEVMRYLRYMFNDHLLFVLVIGLGA
                     GIFYYAGWVKTLEPTFPVIPLMVILLTASIAISPVATLLKKPDIVYLIVQEKAMDSYF
                     TQAKIASFFMQLYVFVIVLGVCMPMYVEVTKVPYSQFFTLFIVLSMLKVWNIYFGWES
                     MKLEEADTTWMFIRVILNAILIYIALVAAPYISIPLVLVVLVASYYWLRTKTAKVTLR
                     WEYLVDKEEARMNRFYRLVNLFTDVPHLRGTVRRRSYLDFLYQPIPYAKRKTFAYLFS
                     RTFIRTNEYAGLYIRLTVIAVILLVFVQGFYLNIIFSLLFLYLTGFQFIPMLKHYDAQ
                     IMLRLYPINDRYRHRSFIHFLRILLLAQALLFSVIGIAQNGTISGMIILGINLAFVVI
                     FTFLYAPARMKKMYE"
     gene            complement(3873..4625)
                     /locus_tag="U0342_002388"
     CDS             complement(3873..4625)
                     /locus_tag="U0342_002388"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423728.1"
                     /translation="MALVEVEHLTGGYTKRPVLKDISFAIEEKQIVGLIGLNGAGKST
                     TIKHITGLMHPKQGTIKINNHQLVEDTETYRKQFSYIPETPVLYEELTLKEHLELTGM
                     AYGISEEELQARMKPLLKEFRLEKKLNWFPAHFSKGMKQKVMIMSAFLIEPKLYIIDE
                     PFVGLDPLGIQSLLNWMDEMRSKGASILMSTHILATAEKYCDTFIIIHQGEIRAEGTL
                     KDLQTNFEMPGASLDEIYIQLTKEEEADEDDI"
     gene            4786..5208
                     /locus_tag="U0342_002389"
     CDS             4786..5208
                     /locus_tag="U0342_002389"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HIT family protein"
                     /protein_id="HEM2423729.1"
                     /translation="MDDCIFCKIVRGEIPSAKVYEDDEVYAFLDLGQVTEGHTLVIPK
                     KHARNTFDLPDETAAELFRRVPKIARALKEALPIQGLNILNNNEEVAFQSVFHCHIHL
                     IPRYSKSDDFGLKWKDNADWYTQERYQEIAELIAAKVD"
     gene            5238..5600
                     /locus_tag="U0342_002390"
     CDS             5238..5600
                     /locus_tag="U0342_002390"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YtxH domain-containing protein"
                     /protein_id="HEM2423730.1"
                     /translation="MNKKSLIFGILAGGAIGAAASVLFAPKSGNELRKDIVAKSGEAS
                     VILKELAYNANELIQSVQVLGTEGSTLLKDVSSDIMESVSKWNEEMEPEKKRLKDEIK
                     DMQKTISDLEKTLKKDNK"
     gene            5783..>6019
                     /locus_tag="U0342_002391"
     CDS             5783..>6019
                     /locus_tag="U0342_002391"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3267 domain-containing protein"
                     /protein_id="HEM2423731.1"
                     /translation="MRCLKSINTERRDEFNRLFLKGILVWLAAVCICFLTQHLIYPDQ
                     LTNDYQLASFLGIILIYPIHKLLHILGCFKYREGT"
BASE COUNT         1912 a         1175 c         1012 g         1920 t
ORIGIN      
        1 tttggcattg gtggtcggtg ataaatcgcg cccacttcat cggtaactac tttacattca
       61 taatcattat catataaaac ctctaaatgt tcagccacaa atccaactgg tgtatagata
      121 aagtgtttat atttttctcg accgtaaagt tctcttgtta aatcttgtac atcaggtccg
      181 agccacggct ccccagtttt cccttcactt tgccaaccta acgcgtaatg aggtactact
      241 actttttcga aaatgaaatc tgctgtttct tgcagttgat ctgggtacgg gtcattatgt
      301 tgtttaattt tctccggtaa actgtgtgcg gaaacaatta aaacagtatc caataattca
      361 tcagctggaa tttgttttgc tgtttcgtta attctatcag cccacatttg aataaatttg
      421 ggttgtttgt accaatcatt gattgctttg atacgaaggc cacctagttt atcagctgca
      481 tcttttgctc ttttgttgta agcttcgacg ctaaagctag agtagtgtgg cgctaaaaca
      541 atcgagattg cttcttctat tccatcttta tgcatagctt ctacagcgtc ttcaataaaa
      601 ggttcaatat gttttaaacc gatatatgcc ttgaattcta cttcgtcttg cgattcattt
      661 aacgcttttt ctaatccata ggcttgtgct tcagtaattt ttgcgagtgg agataatcca
      721 ccaattgcat ggtatcttcc gcgcaaatcc gcaatcattt cttcacttgg cttatgacca
      781 tgacgaatat ctgtatagta acgttcaata tcttcatctt tgtacggtgt cccgtatgcc
      841 attacaagta gacctacttt tttagtcatt ttatatcatc cttttttaat agaatttcgc
      901 tacgttcatg gatgtaatta gttagtttct tcaacatttc tggtggtact tccgggaaaa
      961 cgccatgtcc taaattaaaa atataacctg gttctagtac gccttcttgc aaaatacgat
     1021 ttgcttcttt taaacatttc tctggtgcaa gaagtgtgga cggatccaga tttccttgaa
     1081 ttgcttttgt tggaactttt ttccgagcac ttgtgatggt ttcacgccaa tcgacgccaa
     1141 caacatcaag cggcattgtt tcccattctg ctaaaagatg actcgcgcca actgcttgca
     1201 taataattgg ggttgttgga tgaactgctt tcacttctct aacaatcatt tcgattactg
     1261 gtcgaatgta ttcagcatag tcagctcgac taagtgcccc tacccaagaa tcaaacaatt
     1321 gcaccgcaga agcgcccgca ttaatttgcg caattaaata attcgcagtc attcgaccaa
     1381 gtttttccat tagtattgcc caaacttctg gctcgcgata cataaaactt tttgtttggt
     1441 gataattttt cgatggacca ccttctatca tatagctagc caaagtaaat ggtgcacctg
     1501 caaagccaat taaaggtaca tctagcatat catctgccaa taattttatc gtatctagga
     1561 cataaggaac ttctatttct ggtttgaaca ttgtcagttt ttctacatct tggaaagatc
     1621 taataggatt atgtatgact ggaccaatac cagatttgat ttcaacgtct actcccatcc
     1681 ccggaagtgg tgtcataata tctttgtata aaatggctgc atcaacacca tattgatcta
     1741 ctggtaattt ggttacgtaa gcacatattt ctggctgatg agtaatttca aatagagagt
     1801 atttttcttt taatttgcgg tattctggtt gagatctccc tgcttgtctc atataccaaa
     1861 ccggaattcg gtcaacttgt tcttttcgcg ctgcttttaa aaataaatca ttcgttattt
     1921 ttgtcattga gtcgcttccc ttctttgttc atttacacac aatgggcaac agaacaataa
     1981 ataacttctc cagataaaag gatactagaa aatttgtata aaaccaaaca aattgcctat
     2041 cagctgtttc aattatgaaa aacgtggaaa ataaaggtgt aatcattttt cttaatggaa
     2101 taaaactgaa agaaggactt attatgaaaa aagtatttat cacgactgga acggagcact
     2161 atcttcgtca attaatggca aattatattg gcggaaatgt gacacttcta caaaactttt
     2221 cccaatcact tttgtatcaa gagtcgactg gtgaaaaact tttccaagaa ggcgctgagt
     2281 atcgagtatt gcaaagcagt ggttccttaa aaggttttgg agtagtcgtc tttgaatata
     2341 tccacctccg cgatgaagaa atccctattt tcttgcaaat gtatcaacga gcgagtctgc
     2401 attttagtga aacgcctggc ttgcaaagta caaaactcac aaaagcgatg aatatgaata
     2461 aatttttaat tatttccttt tgggattctg aagtattttt tcatgactgg aaaaaaacac
     2521 ctttatccaa agaaattacc aatatcatga aaaaaaataa tactcaatct ggattctcac
     2581 atgaagatat ttatcattat ccagaatttt cccatgatgc taaataggaa aaagcgattt
     2641 ggaccactca tccaaatcgc tttttttatt cgtacatttt tttcattctg gctggtgcat
     2701 aaaggaacgt aaagataact acaaaagcca aattaattcc taaaatgatc atcccactga
     2761 tggtcccatt ttgtgcaatg ccaatcacac taaagagtag tgcttgagcg agtaacaaaa
     2821 tccgtagaaa gtgaataaaa ctgcgatgac gataacgatc attaatcgga taaagtcgta
     2881 gcataatttg tgcatcataa tgttttaaca tcgggatgaa ttgaaaacca gttaaataca
     2941 aaaatagtag tgagaaaatg atatttaaat aaaaaccttg aacaaacacg agtaaaatca
     3001 cggcaattac ggtaagtcta atgtaaagac cggcatattc atttgttcta ataaatgtcc
     3061 gactgaacaa ataagcaaat gtttttcttt tcgcataagg aattggttga taaagaaaat
     3121 cgagataact ccgtctccga accgttcctc gcaaatgagg tacatccgta aatagattca
     3181 ctaaacgata gaaccgattc atccgcgctt cttctttatc cactaaatat tcccagcgta
     3241 aagttacttt tgccgtttta gttcgaagcc agtagtaact cgccacaagt actaccaaaa
     3301 ccaaaggaat agaaatgtaa ggtgcggcga ctaacgcaat ataaattaaa atagcattaa
     3361 ggataacacg aataaacatc cacgttgtat ccgcctcttc taatttcata ctttcccaac
     3421 caaaataaat gttccacact tttagcatac tgaggacaat aaacaaagtg aaaaactggc
     3481 tgtacggaac ctttgtcact tccacataca tcggcataca aaccccaagc acaattacaa
     3541 aaacatataa ttgcataaag aagctcgcta tttttgcttg ggtaaaataa ctatccattg
     3601 ctttttcctg tacaattaag taaacaatat ccggtttttt cagcaacgtg gcaacaggac
     3661 taatggcaat tgaagcagtg agtaaaataa ccattaacgg aataacggga aatgtgggtt
     3721 caagcgtctt cacccaacca gcgtaataaa aaatccccgc tccaagtcca atcacaagca
     3781 caaaaagcaa atgatcatta aacatataac gaagatagcg catgacttcg gtcgtatagg
     3841 cactaaaacg ttctttccaa agcgctttgc tgtcaaatat catcttcatc agcttcctct
     3901 tcctttgtca actgaatgta aatttcatca agtgaagctc ccggcatttc gaagtttgtt
     3961 tgcaagtctt tcagcgttcc ctctgcgcga atctcgcctt gatgaataat aatgaacgta
     4021 tcgcaatatt tctcagccgt tgcaagtata tgcgttgaca ttaaaatgct tgcaccttta
     4081 ctacgcattt cgtccatcca gttaagtaat gactgaatac caagcggatc taaaccaaca
     4141 aaaggctcat caatgatata taatttaggt tcaattagga aagccgacat aatcattact
     4201 ttttgtttca tccctttaga aaaatgggct ggaaaccaat taagtttttt ctctaaacga
     4261 aactccttta aaagaggctt cattcttgct tgcagttctt cttctgatat accataagcc
     4321 atacctgtta attctaaatg ttcttttaag gttaattctt catataatac aggtgtttca
     4381 gggatataag agaattgctt tctatatgtt tctgtatctt ccactaattg gtgattattg
     4441 attttaatcg ttccttgttt aggatgcatt agaccagtta tatgcttaat ggtcgtactt
     4501 ttccctgccc cgtttagccc aattaagcca acaatttgtt tttcttcaat cgcaaacgaa
     4561 atatctttta agactggacg tttggtatac ccgcccgtca ggtgttcaac ttctactaaa
     4621 gccatttcca tacctcctta cgtaatcttt agttaataat agcatattcg tcccttgaac
     4681 tgtcaaaata atccaccatc tactatctaa cacatgcttt tcactgcttt ttatgttaaa
     4741 ttaaaatagt acataattat atgtaatgaa aggtggtcat acttaatgga cgattgcatt
     4801 ttctgcaaaa tagttcgtgg cgaaattcct tctgccaaag tgtatgaaga tgatgaagta
     4861 tatgctttcc tcgatttagg ccaagttaca gaaggtcata cactcgtaat tcccaaaaaa
     4921 catgctagga acacattcga tttacccgat gaaacggccg ctgaattatt ccgccgcgta
     4981 ccaaaaatcg cgcgggcatt aaaagaagct ttaccgattc aaggattaaa tattttaaat
     5041 aataatgaag aagttgcttt ccaatctgtt tttcattgtc atatccattt aataccaagg
     5101 tatagcaaat cagacgactt tgggttaaaa tggaaagata acgcagactg gtatacacaa
     5161 gaacgttacc aagaaattgc tgaacttatt gcagcaaaag tagactaaaa tgactttatg
     5221 gatggagtgg agtataaatg aataaaaaat cacttatttt cggtatttta gctggtgggg
     5281 caattggagc cgcagcctcg gtattatttg ctccaaaatc cggcaatgag cttcgaaaag
     5341 atattgtcgc taaatcaggt gaagcaagtg ttattttgaa agaactcgca tataatgcaa
     5401 atgaacttat ccaatccgtt caagttctcg gcacagaagg ttccacttta ttaaaagatg
     5461 tttcttctga catcatggaa tctgtttcca aatggaatga agaaatggaa cctgagaaga
     5521 aacgcctaaa agacgagatt aaagatatgc aaaaaacaat ttccgactta gaaaaaacgc
     5581 taaaaaaaga taataaataa gtagagaaac tgggcgactg ctcagttttt ttatttgtct
     5641 aaagtccctt tcaaaaaaac gtcataatta gacaataaat tctctaaaaa aagcttgaat
     5701 tttgtagcat ttgagcatac aatactatgg tgccttctga tggaagagca ctattttagc
     5761 tataactgga ggaaagctta caatgcgctg cctaaaatca atcaacacag agcgacgaga
     5821 cgaatttaat cgacttttcc taaaaggaat tcttgtctgg ctagctgccg tatgtatttg
     5881 ttttttaaca caacatttaa tctatcctga tcaacttaca aatgattatc aacttgctag
     5941 ctttttaggt attattttaa tttacccaat tcataaatta cttcatattc ttggatgctt
     6001 taaataccgt gaaggaact
//
LOCUS       DASEAA010000158         6015 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.158, whole genome shotgun sequence.
ACCESSION   DASEAA010000158 DASEAA010000000
VERSION     DASEAA010000158.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 6015)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 6015)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..6015
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.158"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1342)
                     /locus_tag="U0342_002392"
     CDS             complement(<1..1342)
                     /locus_tag="U0342_002392"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Nramp family divalent metal transporter"
                     /protein_id="HEM2423732.1"
                     /translation="MKKDKTERTKQSWRKAQNAPSLSEVNNSVAIPKNAKFFRKLFAF
                     MGPGALIAVGYVDPGNWATSIAGGSEFGYTLLSVILISNILAVLLQSLASKLGIVTGR
                     DLAQASSDHFSKPFGFVLWILAELAIIATDIAEVIGSAIALNLLFGIPLIWGVCITAL
                     DIFLVLFLQHKGFRYIEVIVITLMVTILVCFGAEMVMSHPDMQAIAKGFIPQSEIVTN
                     PAMLYIALGILGATVMPHNLYLHSSIVQTRQYARTKEGKKEAIRFSFIDSTFSLTIAL
                     LINASILILAAAAFYTTGQHNVAGIEDAYKLLNPTLGSSIASTVFAVALLASGQNSTL
                     TGTLAGQIVMEGFLNIRLKPVVRRLLTRVLAIVPAVIITALYGANGINELLIFSQVIL
                     SMQLSFAVIPLVMFTSDKQKMGEFVNPTWLKIISWAVAIFIAVLNIYLLFYTLTS"
     gene            complement(1455..2126)
                     /locus_tag="U0342_002393"
     CDS             complement(1455..2126)
                     /locus_tag="U0342_002393"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423733.1"
                     /translation="MDTLKQLIDYYQTNGSYVMEEFWRHFLMSAYGVIFAAIIAIPLG
                     VYIARKKRLAGWVIQIANIIQTIPALAMLAVLMLIMGLGTNTVVLSLFLYSLLPILKN
                     TYTGIRNVDGALLESGKAMGMTKWQVLRLIEMPLALSVIMAGIRNALVIAIGVAAIGT
                     FVGAGGLGDIIVRGTNATNGTAIILAGAIPTAVMAILADVLLGWVERTLNPVKNKRKS
                     LTEAL"
     gene            complement(2141..3067)
                     /locus_tag="U0342_002394"
     CDS             complement(2141..3067)
                     /locus_tag="U0342_002394"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="osmoprotectant ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2423734.1"
                     /translation="MKKKFIALFSVLLLTSSLFLSSCSLPGLGGSSKDTIRIGAMATT
                     ESQIVSNILKELIEHDTGLKVEIVNNLGSTIVQHQAMLNGDVDITATRYTGTDLVGPL
                     GEEAIKDPEKALAAVKKGFEERFHQTWFDSYGFANTYVFMVRQDTAKKYNLNTVSDMR
                     KVENELTAGVDNSWMEREGDGYKAFSKAYDIEFKKIFPMQIGLIYTALKNNQMDVALG
                     YSTDGRIPTYNLKLLKDDKKFFPPYDASALATDEILKKHPELKTTINKLKGKISTEEM
                     QKLNYEADGKLKEPSIVAQEFLQKNNYFEGKN"
     gene            complement(3069..3725)
                     /locus_tag="U0342_002395"
     CDS             complement(3069..3725)
                     /locus_tag="U0342_002395"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423735.1"
                     /translation="MDAIVTFFQENGHNLLVQTWQHLFISLSAVILGIAVAVPTGILL
                     TRSPKVANFVIGVVSVLQTVPSLAILAFIIPFLGVGTLPAIIALFIYALLPILRNTFI
                     GVRGVDKNLIESGRGMGMTNWQLIINVEIPNSISVIMAGIRLSAVYVIAWATLASYIG
                     AGGLGDFIFNGLNLYRPDLILGGAIPVTILALVVEFALGKLEYRLTPKAIREAREGGE
                     "
     gene            complement(3729..4922)
                     /locus_tag="U0342_002396"
     CDS             complement(3729..4922)
                     /locus_tag="U0342_002396"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464953.1"
                     /note="Members of the family are the ATP-binding subunit
                     of ABC transporters for substrates such as betaine,
                     L-proline or other amino acids, choline, carnitine, etc.
                     The substrate specificity is best determined from the
                     substrate-binding subunit, rather than this subunit, as it
                     interacts with the permease subunit and not with substrate
                     directly; Derived by automated computational analysis
                     using gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="betaine/proline/choline family ABC transporter
                     ATP-binding protein"
                     /protein_id="HEM2423736.1"
                     /translation="MLKFEHVTKTYKGGKKAVNDLTLNIDKGEFVCFIGPSGCGKTTT
                     MKMINRLIEPTEGKIFINDKDIMAEDPVKLRRSIGYVIQQIGLMPHMTIRENIVLVPK
                     LLKWSEEKKQERAKELIKLVDLPEEFLDRYPYELSGGQQQRIGVLRALAAEQNLILMD
                     EPFGALDPITRDSLQEEFKNLQKELGKTIIFVTHDMDEAIKLADRIVIMKAGEIVQFD
                     TPDEILRNPANSFVEDFIGKDRLIEAKPDVTQVAQIMNTNPVSITADKSLQAAITVMK
                     EKRVDTLLVVDEGNVLKGFIDVEQIDLNRRTATSVMDIIEKNVFYVYEDTLLRDTVQR
                     ILKRGYKYIPVVDKDKRLVGIVTRASLVDIVYDSIWGTVEDATENQEEQADSKTTEPE
                     MKQEG"
     gene            complement(5215..5775)
                     /gene="thiT"
                     /locus_tag="U0342_002397"
     CDS             complement(5215..5775)
                     /gene="thiT"
                     /locus_tag="U0342_002397"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464954.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="energy-coupled thiamine transporter ThiT"
                     /protein_id="HEM2423737.1"
                     /translation="MQNKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYV
                     IAIRRGFWAAGFAGLLWGLLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRS
                     NLAANQLKKAIEWAWGTMIIGGVARYFWHYVAGVLFWGAYAFQGWGAQLFSIVMNGAS
                     CLGTVLVSGIIISILLKTSPKLFLPK"
     regulatory      complement(5843..5953)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00059"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="TPP riboswitch; Derived by automated computational
                     analysis using gene prediction method: cmsearch."
                     /bound_moiety="thiamine pyrophosphate"
                     /db_xref="RFAM:RF00059"
BASE COUNT         1877 a         1211 c         1057 g         1870 t
ORIGIN      
        1 atgacgtcaa agtataaaat aacaagtaga tgtttaagac tgcaataaaa atggcgacag
       61 cccaagaaat gatttttaac catgttggat tgacgaattc gcccatcttt tgtttatcac
      121 ttgtgaacat aactaatggg ataactgcga acgataattg cattgataga ataacttggc
      181 taaaaatgag tagttcattg ataccatttg ccccgtaaag tgctgtgata ataacagctg
      241 gaacgattgc aagtacacgt gttaacaaac ggcgcactac tggttttaaa cggatattaa
      301 ggaaaccttc catgacgatt tgaccagcta atgttcctgt taaagtagaa ttttgccctg
      361 atgcgagtaa tgctactgca aaaacagtgc tggcgatact gcttccaagt gttggattga
      421 gtaatttgta agcatcctca ataccagcga cattatgctg accggtcgta taaaaagcgg
      481 cagccgctaa aattaaaatc gatgcattga ttaataatgc aatcgttaaa gaaaaagtgg
      541 aatcgataaa ggaaaaacga atcgcttctt tcttcccttc ttttgttcga gcgtattgtc
      601 tggtttgaac aatagatgaa tgcaaatata aattatgtgg catcactgtt gccccaagaa
      661 taccaagtgc aatataaagc atagctggat tagtaacaat ttctgattgt ggaataaaac
      721 cttttgctat tgcttgcata tcaggatgag acatcaccat ttccgcacca aaacatacaa
      781 gaatcgtaac cattaaagta ataacaataa cttctatgta gcggaaacct ttatgttgta
      841 aaaataatac gagaaaaata tctaatgcag taatacaaac tccccaaatt aatggaatcc
      901 caaatagtaa attaagcgca atcgcactac cgatgacttc tgcgatatct gttgctataa
      961 tcgctaattc agctaaaatc caaagaacga atccaaatgg tttagaaaag tgatcacttg
     1021 aagcttgggc taaatcgcga ccggtgacaa tgcctaattt tgatgcaagt gattgtaata
     1081 aaacggctag aatattagaa attaaaataa cggataacaa tgtgtaacca aattctgacc
     1141 cgccggcaat agaagttgcc cagttccctg gatcgacata gccgaccgca ataagtgcac
     1201 ctggccccat aaaggcaaat aatttacgga aaaattttgc gtttttagga atagctacgg
     1261 aattatttac ttcgcttaag ctgggagcat tctgtgcttt tctccagctt tgttttgtac
     1321 gttctgtttt atcctttttc atgctccctg accttctttc gtttatgata aaaagtttac
     1381 tacgggaaac attctttgtc aaacgaaaaa cacaaccgtt ttatagaaat gataggttgt
     1441 gttttcgtat atttttataa ggcttcagtt agtgattttc ttttgttttt aactgggttt
     1501 agtgtgcgtt cgacccaacc gagaagtaca tcggctaata tggccataac tgcggttggg
     1561 atagcaccag ctaaaatgat agcagtacca tttgttgcat ttgttccgcg tacaataata
     1621 tcaccgagac ctcccgctcc aacgaatgtc ccaattgccg ctacaccaat agcaataaca
     1681 agtgcatttc gaatacctgc cataataaca gataatgcga gtggcatttc tatgaggcgt
     1741 agtacttgcc attttgtcat ccccatcgct ttaccagatt ctaaaagtgc gccatcaacg
     1801 tttctaatgc ccgtataggt gttttttaga attggtagta aagaatatag gaataaggat
     1861 aagacgactg tattcgtccc taagcccatt ataagcataa gtacggctaa cattgctagt
     1921 gccggaattg tttggatgat attagcgatt tggataaccc agccagctaa gcgttttttt
     1981 cttgcaatat atactccgag cggtattgcg atgattgctg cgaagataac tccgtaagca
     2041 ctcatcaaga aatgccgcca gaactcttcc atgacataac ttccatttgt ttggtaataa
     2101 tcaattaatt gttttaatgt gtccatcttt tggcacctcc ttagttttta ccttcaaagt
     2161 aattattttt ttgcaagaat tcttgcgcta cgatggacgg ttctttcaat ttgccatccg
     2221 cttcataatt aagtttttgc atttcttctg tcgaaatttt accttttaat ttattgatag
     2281 tcgtttttaa ttctggatgt ttctttaaaa tttcatctgt tgctagagct gaagcatcat
     2341 atggtgggaa gaatttttta tcatctttta atagttttaa attgtaagtt gggatacgtc
     2401 cgtctgttga ataaccaagc gccacatcca tttgattgtt tttaagcgct gtgtagatta
     2461 agccaatttg cattggaaat attttcttga attcaatatc ataggctttt gaaaatgctt
     2521 tatagccatc gccttcacgt tccatccaag aattatcgac accagctgtg agctcatttt
     2581 ctacttttcg catatcactt acggtgttta aattgtattt tttcgcagtg tcttggcgta
     2641 ccataaacac atacgtatta gcaaagccgt aagaatcaaa ccaggtttgg tggaaacgtt
     2701 cttcaaaacc tttcttaaca gctgctaaag ctttttctgg atctttaatt gcttcttcac
     2761 caagtggacc aactaaatct gtaccggtat atcttgttgc agtaatatct acatccccat
     2821 ttaacatcgc ttggtgctga acgatagttg atccaaggtt gttgacgatt tctactttta
     2881 ggccagtatc atgttcaatt aattctttta aaatattcga aacgatttga gattcagttg
     2941 ttgccattgc accgatgcga atagtatctt tggaactgcc tccaagtcct ggtaaagaac
     3001 agctagataa gaaaagagaa ctagttagta gtaatacgct gaataacgcg ataaattttt
     3061 tcttcatgtt attctccccc ttcccgagct tcacggatgg cttttggagt tagacgatat
     3121 tctaattttc caagcgcgaa ttctactaca agggctaaaa tggtaacagg aattgcccca
     3181 ccaagaatta aatctgggcg gtataagttt aaaccattaa aaataaagtc tcctagtcca
     3241 cctgctccaa tgtaagaagc aagtgttgcc caagcgataa catatactgc agataaacga
     3301 ataccagcca taataacgga gatggagtta ggaatttcga cattaataat tagttgccaa
     3361 ttcgtcatcc ccatgcctcg accagattcg attaaatttt tgtcgactcc tcgaacacca
     3421 ataaacgtgt ttcgtaaaat tggtaaaagt gcgtaaataa ataacgcaat aatcgctggt
     3481 aaagtaccaa caccaagaaa cggaataata aacgccaaaa tggcaagaga aggaacggtt
     3541 tgcaaaacac taacaacacc aattacaaaa tttgctactt ttggtgagcg tgtaagtaaa
     3601 atcccagttg gtactgcaac cgcaatacct aaaataacag cagataggga gataaataaa
     3661 tgttgccatg tttgaacaag caagttatgg ccgttttctt ggaaaaatgt aacaattgcg
     3721 tccatagctt atccctcctg cttcatttct ggttctgtcg ttttggaatc cgcctgttcc
     3781 tcctgatttt ctgtcgcatc ttctaccgta ccccaaatgg agtcatacac gatatccact
     3841 aagctggcac gagtaacaat tccgacaagt cgtttatctt tatccactac aggaatgtat
     3901 ttatagccgc gttttagaat ccgttgtaca gtatcgcgaa gcaaggtatc ttcatacaca
     3961 taaaagacat ttttctcgat gatatccatg acagaagttg ccgtacgacg atttaaatca
     4021 atttgctcta catcgataaa tcctttcaac acgttacctt catcgacaac aagtaatgta
     4081 tctactcgtt tctctttcat gacagtaatc gcagcttgga gtgatttgtc cgctgtaata
     4141 gagactggat ttgtgttcat gatttgtgct acttgtgtaa catctggttt cgcttcaatt
     4201 aagcgatctt taccgatgaa atcttctaca aacgaattcg cagggttacg caaaatttca
     4261 tctggagtat caaattgaac aatttcacca gctttcataa tgacgatacg gtccgccagt
     4321 ttaatcgctt catccatatc atgggtaaca aaaataatcg tcttgccaag ttctttttgc
     4381 aaatttttga attcttcttg tagggaatca cgagtaattg gatctagtgc tccaaaaggt
     4441 tcatccatca gaattaagtt ttgctctgct gcaagcgctc ttaaaacacc gatacgttgc
     4501 tgctgtccac cacttaattc gtaagggtaa cggtccaaaa actcttctgg taaatctact
     4561 aatttaatta attcttttgc ccgttcttgt tttttctctt cggaccattt aagtaatttt
     4621 ggtacaagga cgatattttc acgaatcgtc atatgtggca tcaagccaat ttgctgaata
     4681 acataaccaa tagaacgtct tagtttgacg ggatcttccg ccatgatgtc tttatcatta
     4741 ataaatattt ttccttctgt aggttcaata agccggttaa tcatcttcat tgttgtcgtt
     4801 ttcccacaac cacttggacc gataaaacaa acaaattctc ctttatcgat gtttagtgtt
     4861 agatcattaa ctgctttttt gcccccttta taagtctttg ttacgtgttc gaattttaac
     4921 acgcttacac acctccattt tttctttacc aataccaaaa aaattggcaa tcggtaacta
     4981 atttccctaa ctagtataga tttaaacttt ttaaatacaa aaaaacagct taaagacagt
     5041 gttacattca aacggaagtt actaaacaag atgatttcgt acttgtggca cgtgtgacat
     5101 cgatgctaaa ctcgtaatcg tgaaaatgag cattgtaata agctgcaata tagtatttat
     5161 ttaattataa cacacttaaa aaggcccaaa agcaattgct tctggacctt ttggttattt
     5221 tggtaaaaat aattttggtg aagtcttcaa taatatcgaa ataatgatac ctgaaacaag
     5281 gacggtacca aggcaactag ctccattcat cacgattgaa aatagttgtg ctccccaacc
     5341 ttgaaatgca taagcacccc agaataatac tcctgcgaca tagtgccaaa aatatcgagc
     5401 tactcctcca ataatcatgg ttccccacgc ccattcaatt gcttttttga gttgattagc
     5461 agctaaatta cttcgaactt gcttgctaaa gacaccgctg aaagcaataa aactgaatgc
     5521 caaaatatac tcaataattg cctgggaggg cattaatata tatgccttac ctgttaagaa
     5581 atgtagtaac ccccataaca atcctgcgaa tccagccgcc caaaaaccgc gtcgaatcgc
     5641 gataacatac attggaatca ttccaagcga gatggaaaaa ctggaaccaa tgtctagcgg
     5701 gatgaaactt aataccatcg caactgcagc aaagatagca cactcaagta aaatgattaa
     5761 tcgtttgttt tgcataaaaa ataaactccc ctcttctttt tggtcaaaaa cgtaccccag
     5821 aagaaagcag tttctattgt tagaaatgca atcgccacaa tccctacgct cgtattaacg
     5881 aacaggttca aagggtcaga atccaaaaac acgtggactc aatctcagct aagaagcccc
     5941 ccctgtggta acgtctatga aattatcgta caacaattat tatagcatgc acttcttttt
     6001 tgtaaagaat tattt
//
LOCUS       DASEAA010000159         5982 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.159, whole genome shotgun sequence.
ACCESSION   DASEAA010000159 DASEAA010000000
VERSION     DASEAA010000159.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5982
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.159"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..3716)
                     /locus_tag="U0342_002398"
     CDS             complement(<1..3716)
                     /locus_tag="U0342_002398"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423738.1"
                     /translation="MLKKIFIALIALVVIINTVSFTAVSASTPTWLEQTMNSNEPFIK
                     EIEKETGKTRANITQTDLEAITALRVTGASDIPTNIDMLTHLTTLEVKNGTLSSVSNS
                     VGNLKELKILVLNDNNLSTFPMIAFQLPKLEELQVSGGTIEEIPATITNMASHLKFLG
                     ILNNHLVKVPDAIFTTNWTNATGGDLDLMAAGNQIVTNIPANYISQFNNGDNLLEFYD
                     NNYQKQDQLTTTPGYTIDVPVGTDFNQLTPDKTKLALTSGRTLLAQHEFEYYDDGSSS
                     LIHNGVAAAPGQATIFIKSKFSTQSNKFARTQVTVNITALNGGPITVKHEDTKGQELA
                     PPVILNGKDGDPYTTTQKTFPGYTLVATPANQNGTFTMNPATVNYVYSANDYKLTSTF
                     KDAQGQELKAPVVDTKDYHIQDNYTTTAATIPGYSLVATPANQNGTFGAGNVTVNYVY
                     KKDDYTLTSTYKDTNGQELKAPVVDATTYHYQDTYTTTAAVFPGYTLVATPTNATGTF
                     GSSNITVHYVYQANGYQLTSTFKDQQGKTIAPDDVDTKTYHVNDPYTTTAKTIPGYTL
                     VTTPTNNQGNFGTSDITVDYVYKAEDYTLTSTYKDAQGKELKQPVVDSKKYHIQDNYS
                     TSAATIPGYTLVSTPANETGTFHTSDVTVNYVYKLTDLKLTSTYKDAQGTELKPPVVD
                     SKTYHIQDNYATTAAVIPGYTLVATPANQSGTFGSTDIQVNYVYQAVAYKLTSTYKDQ
                     QGNDLALPKVDSKTYHIQDGYTTSDIAIPGYTLVAAPTNQTGTFGASDVTVNYVYKAN
                     DYTLTSTYKDAQGKELKTPVIDSQKYHINDTYTTTGATIPGYTLVAAPANQSGTFGAA
                     NVTVNYVYKADDYTLTSTYKDANGKELKAPVVDSKTYHTKDNYSTSAATIPGYTLVAA
                     PTNQTGTFNTSNVTVNYVYKANEYTLTSTFKNVQGTELKPAIVKKGFIIKDGYATSGV
                     TIPGYTLVATPSNKKGTFGASNVTVNYVYKANGYALITTYKDTQGKDLKPLAIDTKTY
                     NINDPYTATALNISGYTLTTTPANEKGVFGASDETVNYVYKANDYTLTTTYKDANGKE
                     LQAPKVDAKTYHIQDTYKTTAAIIPGYTLVATPKNDQGTFGASNVTVNYVYQTNDYTL
                     TSTFKDAQGNELKAAEIDVQKYHIHDTYTSKAAVIPGYSLEKTPTNETGTFNASDIQV
                     NYVYKANDYQLTSTFKDQQGNEIALPTVDAKTYH"
     gene            complement(3918..4790)
                     /locus_tag="U0342_002399"
     CDS             complement(3918..4790)
                     /locus_tag="U0342_002399"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463856.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2423739.1"
                     /translation="MISYGELIRQIRQSKKISQKEVYTGVISKSYAIEFEKGTHAISS
                     LLLEKIVAKLMVSMEEFFLMYHQEELPEKEDFWETYARTCKTDEASAWESLYQKISLE
                     KGKVNQVKSAAIKLELDHIKGKQVADKKAVQILENYLIEAVFWTLQDIFLFTRMMHYL
                     PLKSRVPFYYKLLNTLDRYRHFERGRSILQSALASIMDDFIERNEIEHMELMIKSLEK
                     ISEDCDGTYFKILCMYYRGIVRWGEGEEREGGEEIEQAVAILRALGYENKAIEYETMY
                     RQFARENNDIKTME"
     gene            complement(4954..5856)
                     /locus_tag="U0342_002400"
     CDS             complement(4954..5856)
                     /locus_tag="U0342_002400"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463855.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XRE/MutR family transcriptional regulator"
                     /protein_id="HEM2423740.1"
                     /translation="MGSYGELIREIRLSKGLTQKEVYTGIISRSYAIGFEKGKHEITL
                     SLFEEILKRIMVPLDEFFFIYRDFSSTEDDSFWIDFVELSGKNDVVGMQALLDKITLE
                     RTEQTEVRKAILHTRIQTINHYLRTNVFDESNISDEYKKIIHDYLWKMQTWTLEEVRI
                     FSNGISFFEEEVQIHFYQIMLKSYEKYRYYDRGRLLFCHLFANLTDELIIQNKINYAN
                     LVLEKLKEASETSGSFNSAFYRIVANYYQGAIWMKEGEVEKGYRQAKRAIQTWKELHY
                     EAIADLYSVVLKQFLEKENIQVED"
BASE COUNT         1566 a         1160 c         1040 g         2216 t
ORIGIN      
        1 atgtgataag tttttgcatc aactgttggt aatgctattt cgttgccttg ttgatcttta
       61 aaagtagaag taagttgata atcatttgct ttatacacat aatttacttg aatatcactt
      121 gcattaaaag tacccgtttc gttcgttggt gttttttcta aactgtaacc cggaatcacg
      181 gctgctttag atgtgtaagt gtcatgaata tggtattttt gtacgtctat ttctgctgct
      241 tttaattcgt ttccttgagc atctttaaat gtcgaagtta gcgtgtaatc atttgtttgg
      301 tacacgtaat tcacagttac attgctcgct ccaaaagtac cttggtcatt cttaggtgtt
      361 gccactaatg tatacccagg aatgattgct gcagttgttt tgtatgtgtc ttggatatga
      421 taagttttcg cgtctacttt aggtgcttgt agttctttgc cgtttgcgtc tttgtaggta
      481 gttgttaacg tataatcatt tgctttatat acgtaattaa ctgtttcatc acttgcgcca
      541 aatacacctt tttcattggc tggtgtagtt gttaatgtgt aacctgaaat gtttagcgcc
      601 gttgcagtgt atgggtcgtt aatattgtat gtttttgtat caatggctag tggttttaag
      661 tctttacctt gtgtgtcttt atatgttgtg attaatgcat aaccattcgc tttatataca
      721 taattaactg ttacattact agcaccaaat gttccttttt tgttcgatgg tgttgccact
      781 aatgtatagc ccggaattgt tacgccgcta gtcgcatagc catccttaat aataaatcct
      841 tttttcacga tagctggttt tagttctgtt ccttgtacat ttttgaaagt ggaagttaag
      901 gtatattcat tcgctttgta aacataattg actgtcacat tgctcgtatt aaatgtacct
      961 gtttgatttg ttggtgctgc cactaatgtg tagcctggaa tggttgctgc gctagtagaa
     1021 tagttatctt ttgtatggta agttttgctg tctacaactg gcgcttttaa ttctttgccg
     1081 tttgcatctt tgtaggtcga agttaatgtg taatcatctg ctttgtatac atagttgact
     1141 gttacattcg ccgcgccaaa tgtacctgat tgattcgctg gtgctgcgac taatgtataa
     1201 cctggaatag tagctcctgt cgtagtataa gtgtcgttaa tgtgatattt ttgactgtct
     1261 atgactggcg tttttaattc cttaccttgc gcatctttat atgttgaagt tagtgtgtag
     1321 tcattggctt tgtagacata attcacggtt acatcactcg cgccaaatgt acctgtttga
     1381 ttcgttggag ccgcgactaa tgtataacct ggaatagcaa tatcactcgt cgtgtaacca
     1441 tcctgaatat ggtacgtttt cgaatctact tttggtaaag ctaaatcatt cccttgttga
     1501 tctttatacg tcgaagttag tttataagca actgcttgat acacatagtt cacttggata
     1561 tccgtgctac caaaagtacc tgattggttc gctggtgttg cgactaatgt atagccagga
     1621 atgacagctg cagttgtagc atagttatct tgaatatgat acgttttact atctacaacg
     1681 ggtggtttta actccgttcc ttgcgcatct ttatatgtcg aagttaattt taagtctgtt
     1741 aatttataca cataattaac cgtgacatcg ctcgtatgga aggttcctgt ttcgttcgca
     1801 ggtgtcgata ctagcgtata acccggaatg gttgctgcac ttgtagaata gttgtcttga
     1861 atatgatatt ttttactatc tacaacgggt tgttttaatt ctttaccttg cgcatctttg
     1921 tacgtcgaag ttaatgtata atcttctgct ttataaacgt aatcaaccgt aatatcgctt
     1981 gttccaaaat taccttggtt gtttgtaggg gtcgtcacta atgtgtagcc cgggatcgtt
     2041 ttggcagttg ttgtataggg atcgttcacg tgataggttt tagtatcgac atcatctggt
     2101 gcgattgtct tcccttgttg atctttaaat gtagaagtta attgatagcc atttgcttga
     2161 tatacgtaat gaacagtgat gtttgacgaa ccaaatgtcc cagtagcgtt ggttggtgtt
     2221 gctactaacg tataacctgg gaaaactgcg gctgttgttg tatacgtgtc ttgataatga
     2281 tacgttgtcg catctaccac tggtgctttt agttcctgac cgttcgtatc tttgtaagtg
     2341 gaagtgagcg tataatcgtc ttttttgtat acataattaa cggtaacatt cccagctcca
     2401 aaagttccgt tctgattagc aggtgttgca actaaagaat agcccggaat ggttgctgct
     2461 gttgtagtat agttgtcttg gatatggtaa tcttttgtat ccacaactgg cgctttcagt
     2521 tcttgacctt gggcatcttt gaaagtagat gttagtttat aatcatttgc gctgtataca
     2581 tagttgactg tagccgggtt catggtgaat gtaccatttt gattggctgg tgttgcaact
     2641 aaagtatagc ctgggaaagt tttttgtgtc gttgtataag ggtccccgtc tttaccattt
     2701 aaaatgacag gtggcgcaag ttcttgtcct tttgtatctt catgtttcac tgtaataggt
     2761 ccgccgttta gcgcagtgat gtttactgta acttgtgttc tggcaaattt gttcgattgc
     2821 gtggaaaact tgctcttgat gaaaatggtc gcttgacccg gtgctgctgc tacgccattg
     2881 tggattagtg aacttgaacc atcatcataa tactcgaatt cgtgttgcgc gagtaaagtt
     2941 cgtccagatg ttagtgcgag tttcgttttg tctggtgtta attgattaaa atcagttcca
     3001 acaggtacat caatggtata tccaggtgtt gtagttagtt ggtcttgttt ttgatagttg
     3061 ttatcgtaaa attctaatag gttatcccca ttattaaact ggcttatata gttagcagga
     3121 atattggtta caatctggtt ccctgcagcc attaagtcta agtctccccc agtagcattt
     3181 gtccagttcg tagtgaaaat tgcgtctgga accttcacta aatggttatt taatatccct
     3241 aagaatttca aatgactcgc catatttgtt attgtggcag ggatttcttc tattgttccc
     3301 ccagaaactt gtaattcttc taacttaggt agttggaaag caatcattgg aaaggtgctt
     3361 aaattattat cattcagaac taagattttt aactccttta aattccccac tgagttagat
     3421 acggaagata atgttccatt cttaacttct aacgtagtta aatgagttaa catatcgata
     3481 ttagtcggaa tatcacttgc ccctgttact cgcaaggcag ttatagcttc taaatctgtc
     3541 tgtgtaatat tcgctctcgt cttaccagtt tctttttcaa tctcttttat aaacggttca
     3601 ttactattca tggtttgttc taaccatgta ggtgtgcttg cagagacagc cgtaaaacta
     3661 actgtattga taataactac aagcgcaatt aatgcaataa atattttctt taaaataaca
     3721 atcttcctcc ttttaacgct aaatttgcag tgtcagttgg caatttattc ctttgccaaa
     3781 gcccctccct tcactgtcaa tatggcttta agccgtactt cagtctatat aatactatgc
     3841 ggagtcttaa aattttctaa tgtcgcatat atactactca aaaaaagaaa accaaaaaga
     3901 atagtccttt ttagctttca ttccatcgtt tttatatcgt tgttttccct cgcaaattgc
     3961 cggtacatgg tttcatactc tatcgcttta ttttcataac ctaatgctcg caaaatagct
     4021 actgcctgct cgatttcttc gccaccctcg cgctcttcac cttctcccca ccgcacaatt
     4081 ccacgataat acatacaaag aattttgaaa taagtaccat cacagtcctc actaattttt
     4141 tctaagcttt ttatcattag ctccatatgc tctatttcat ttctctctat aaaatcatcc
     4201 atgatactag ccagcgccga ttgtaaaatg cttcttcctc gttcaaaatg gcggtatcta
     4261 tccagcgtgt ttaacaattt ataatagaac ggtactcggc ttttcagtgg caaatagtgc
     4321 atcatccgcg taaataaaaa gatatcctgc aatgtccaaa aaaccgcttc aatcaaataa
     4381 ttttccaaaa tttgaaccgc ttttttgtcc gccacttgtt tgccttttat atgatctaac
     4441 tccagtttta tcgccgcgct tttcacttga ttaacttttc ctttttctaa tgatattttt
     4501 tggtaaaggg attcccaagc gcttgcttca tccgttttac atgtccgcgc gtaagtttcc
     4561 caaaaatctt ccttctccgg caactcctct tgatgataca ttaagaaaaa ttcctccata
     4621 ctcaccatta acttagcgac aattttctcg agtaataggc ttgatattgc atgtgtcccc
     4681 ttttcaaatt caattgcata agatttacta ataacccctg tgtacacttc tttttgggag
     4741 atttttttag actgtcttat ttgccgaatc agctcaccat aacttatcat ccgaagacct
     4801 cctcttagct caattcttgc ctttatttta cattcctttc ttttctctct gtaaatagtg
     4861 ctatatatag tacataaaac atctttacca caaacaaaaa aacactaaaa cgactccatt
     4921 ttagtgtttt ttaaatagaa attcttcgga tagttaatct tctacttgga tattttcttt
     4981 ttctaaaaat tgttttaata ccacgctata caaatctgct attgcttcat aatgcagttc
     5041 tttccatgtt tgaatggctc ttttggcttg gcgatagccc ttttccactt cgccttcttt
     5101 catccaaata gccccttgat aataattggc tactattcga taaaaagcac tgttaaaact
     5161 accacttgtt tcagatgctt cttttaattt ttcgagtact agattcgcat aattgatttt
     5221 attctgtatg atgagttcat ctgtcagatt agcaaataga tggcaaaata gcagtcttcc
     5281 tctatcatag tacctatact tttcatacga tttcaacata atttgataaa agtgaatttg
     5341 tacttcttcc tcaaaaaatg atatgccgtt ggaaaaaata cgaacctctt ctaaagtcca
     5401 cgtctgcatt ttccaaagat agtcatgaat aattttttta tattcatcag aaatattcga
     5461 ttcatcaaac acattcgtac gcaaataatg attaatcgtt tgaattctcg tatgaagtat
     5521 cgcttttcta acttctgtct gctccgttcg ctctaaagtt attttatcta gcaacgcctg
     5581 catccctaca acatcatttt tacctgatag ctcgacgaaa tcaatccaaa aactatcatc
     5641 ctctgtcgaa gaaaagtctc tgtaaataaa aaagaattca tctaaaggaa ccatgatccg
     5701 ctttaaaatt tcttcaaaca aactcaaagt aatctcgtgt tttccttttt caaatccgat
     5761 tgcataagac ctagatataa ttcctgtgta tacctctttt tgagtcaaac ctttagatag
     5821 ccgtatttcc cgaatcaatt cgccatatga acccatatga tatcccccta attaagttct
     5881 tccatttcaa aaagtcggaa tgcagtatct atgtctatgc tttaatttct ctactccaaa
     5941 caatttagga atcattgttc ttaaaatata taccctaaac ac
//
LOCUS       DASEAA010000160         5871 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.160, whole genome shotgun sequence.
ACCESSION   DASEAA010000160 DASEAA010000000
VERSION     DASEAA010000160.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5871)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5871)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5871
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.160"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..2660)
                     /locus_tag="U0342_002401"
     CDS             complement(<1..2660)
                     /locus_tag="U0342_002401"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan bound protein"
                     /protein_id="HEM2423741.1"
                     /translation="MLKHNWQKVFVVMVAVALIFQLVPWSNIFAGAEENQTKTTQQIA
                     QSDEQKGADENKTTVTSDNRETTKNLVNGKQLLKGSVDWNFTNKVTDANGNTKQTYAP
                     GDSLKFSISLAIPSYSESVLDETYTFWIQKDFFQGDKVTFVNPAIDGLTPRQNVFTDD
                     SMKNSIGTKTINGVEYIGYTLKFNQSPEALAKYEDEPLTNAKFDMFATINTTITTKDD
                     YKAIVIEDDKDVDISNIEVPVTPPTPDTDNGVLTASKAIDSAWRLDKDTGKYLKVATS
                     STNYTPEKDDLVFYYVYATNNSAENAVLEKMVDELPAGFSIITEGSPEWQALSTASGS
                     SLQRGWVASADQTNLAPGATRYELPFSPAQTISKNGGGIYKTIAAKVTDPTKDLTNVT
                     KSPTKGGEGKSGSVTPSGKDVYDMAITTKISSTYDKNNKYIGAVSSTTTPVSISEGST
                     VGVTYTAINQGNYTKDVVVYAYVPAGYELNNDTSDFKTTNDKWKYETTVPSGGGVWSD
                     IKVYSITLSGGMASGATATATMYMKAIGMPDDGTYSAVDFYMAGEIGSFSNFNGDSTL
                     DGAITDVDSTPDMNPGNDLISNVDGSTVKPIDGFQKEKPHVVKENAKSTATLQDEDDF
                     DFDYVTFIKTPEVIPSEGKVFEKTRLSAADAEKTARNMIGSDIMGSALKDYTPLADDG
                     RITSPKTYMVYEMNINPSGVEDTLNSSFTDTLPKGLKMLEYDIAGLNSSNKHIYGFTT
                     NKFEGTPKFTNADGQDVIVYQKGLYSEKQVCIANPTLNDVGVRYFGNNADKMGVTGSV
                     TKDARTLTLNFGQPAADPMYSETKAAYKVYMIVVIDPDEIDYSSIMQNKATYTYNDKV
                     ITSYENSEMYWDAGGGTAYAKKYVLDNKTNA"
     gene            2963..4642
                     /locus_tag="U0342_002402"
     CDS             2963..4642
                     /locus_tag="U0342_002402"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423742.1"
                     /translation="MWKKHKWLIIAVLLLVIYVAPLFILGGNSHVRIHDNLDSNVTWY
                     KMVLDSGDYTAKVGTANIDQIMDDSVPRDSFDSEFVGIDWLYMIFSTPIAFAMSQLIT
                     RVFAFLGLFLWARDYLIKDKKYLVPLYFVSLAFALTPFWPSGMLSTLGMPLALWAFLN
                     IRNNKRRIWNVVILTLLPFYSSLILGFCFFLVMVGCIWLYDVFKKKQVNIRFLLSMLY
                     MTLLYALVNYRFIYAMFLHPEPDSRSEFSLPELSFLSSIRLSFKNFIIGHTHDQALAG
                     FVIIPVLLLVLALIIIKREWGKEKLFLWLFGFNLFLSFWYGFWWYRGWNVIKEHVEIM
                     RTFNFSRFHFLQPFLFYGLFALAIVYLIKKGNWWRKLAYVVVALQLVVVFANNSEIYY
                     RTGNGSPSINQFYATEQMEEIKDYIGKPQSSYRVGSIGLHPSVSQESGFYTVDGYVNS
                     YPLAYKRAFRKIIAGELDKSPVLEDYYDNWGNRCYIFSAELGKKYDFGKDSKKHIKQL
                     DFNSEAFKKVGGEYILSAVPIDNASEVGLQFEKAFDNKDSYWKIYLYKATK"
     gene            4727..5428
                     /locus_tag="U0342_002403"
     CDS             4727..5428
                     /locus_tag="U0342_002403"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464152.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SGNH/GDSL hydrolase family protein"
                     /protein_id="HEM2423743.1"
                     /translation="MKKTIQSVGVWGDSIMKGVLFNPEKNRYTLLKNNCIKRASEKLG
                     LTFQNHSTMGRTITKGHEILTKDLAKDATNDIAIIEFGGNDCDFNWTEVSENPTAEHI
                     PSTPLNIFETQLLEMIARLKKLDIKPILMTLPPLHAKRYFDFITRNGLNKDNILQFLG
                     GDVEMIYRWQERYSNTISRIAAETGSHIIDVRDSFLAEFHYENLLCADGIHPNEAGHI
                     AMSRKFIQYASFHKA"
     gene            5459..>5871
                     /locus_tag="U0342_002404"
     CDS             5459..>5871
                     /locus_tag="U0342_002404"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464151.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423744.1"
                     /translation="MTASDLEDFLSTAITDYANEKVEAGTWDEEEALAKSQDSFNKLL
                     YDGITTPNEYLYSIISGEKIGYIWFHVDETRSGKHAFIYDFVIFEAFRGKGFGTKTLE
                     ALDALAKEMQITKIELHVFAHNQTAIGLYNKVGFQ"
BASE COUNT         1684 a         1044 c         1106 g         2037 t
ORIGIN      
        1 gcatttgttt tattatctaa aacatatttt ttcgcatagg ccgtaccgcc accagcatcc
       61 cagtacattt cgctattttc ataagaagta ataactttat cgttgtaagt gtatgttgct
      121 ttattttgca tgatactgct gtagtcaatt tcgtctggat caattaccac aatcatatac
      181 actttataag ctgcttttgt ttcactatac atcgggtcag ctgccggttg tccaaaatta
      241 agggttagtg tacgtgcatc ttttgttacg gaaccagtta cacccatttt atccgcgtta
      301 tttccgaaat accttactcc aacgtcattt aaagtagggt tggcaataca aacttgtttc
      361 tcggaatata agcctttttg ataaacaata acatcttgtc cgtctgcatt tgtgaatttc
      421 ggtgtacctt caaatttgtt cgttgtaaaa ccataaatgt gtttattgct agaatttaaa
      481 ccagcaatat catattcaag cattttcaat ccttttggaa gtgtatctgt gaacgaagaa
      541 tttagtgtgt cttctactcc agatgggtta atgttcattt catagaccat atatgttttt
      601 ggtgaagtaa ttctaccatc gtcggcaaga ggcgtatagt ctttcaaggc agaacccatg
      661 atgtcgctac ctatcatatt gcgcgctgtt ttttctgcat cagctgctga tagacgtgtt
      721 ttttcaaaca cttttccttc tgatggaatt acttctggtg ttttaatgaa cgtaacataa
      781 tcaaaatcga aatcatcttc atcttgtaaa gtcgctgttg atttagcatt ttcttttaca
      841 acatggggtt tttctttttg gaagccatca ataggtttta cagtagaacc atcaacattg
      901 ctaatcagat catttcctgg attcatatct ggcgtcgaat ctacatcggt aattgctccg
      961 tctaaagtag aatcaccatt aaagttagaa aatgaaccga tttctccagc catgtaaaag
     1021 tctactgcgc tataagtccc atcatctggc atgccgatag ctttcatgta catggtcgca
     1081 gttgcagttg cacctgatgc catgcctcca gaaagtgtaa tggagtaaac tttgatatca
     1141 ctccacacac cgccaccact aggtacggtt gtttcgtatt tccatttatc attcgtagtt
     1201 ttgaaatcag atgtatcatt atttagttca taacctgctg gtacataggc ataaacgaca
     1261 acatcttttg tataattccc ttgattaatc gctgtatatg ttacgccaac tgtgcttcct
     1321 tctgatatag aaacgggcgt agttgtgcta ctaacagcac caatatattt attgttttta
     1381 tcgtaagtgg aactaatttt tgtcgtaatt gccatgtcat aaacatcttt cccacttggc
     1441 gttacagaac cagatttacc ttcgccgcct ttagttgggc ttttagtaac attagtcaaa
     1501 tctttcgttg gatctgttac ttttgctgcg atcgttttat aaataccgcc accatttttg
     1561 gagattgtct gagctgggga aaatggtaat tcgtacctag ttgcgccagg ggcaaggttt
     1621 gtttggtctg ctgaagctac ccagccgcgt tgaagcgaag agccagatgc agttgataac
     1681 gcctgccatt ctggtgagcc ttccgtaata atggaaaaac cagctggtaa ttcatctacc
     1741 attttttcta aaacggcatt ttccgctgaa ttgttcgtag catacacata atagaaaact
     1801 agatcatctt tttcaggtgt atagtttgta gatgatgtag cgactttaag atattttcca
     1861 gtgtctttat ctaaccgcca agcagaatcg attgctttag acgcggtgag tacaccatta
     1921 tctgtatcgg gagttggtgg tgtcacgggg acttcaatat tactaatatc tacgtcttta
     1981 tcatcttcaa ttacaatagc tttatagtca tctttcgttg taatagtcgt atttattgtt
     2041 gcaaacatat caaatttagc gttagtaagc ggctcatctt catattttgc caaggcttct
     2101 gggctttggt taaatttgag cgtgtaacca atatactcga caccatttat tgtttttgtt
     2161 ccaatcgagt ttttcatgga gtcgtctgta aaaacatttt gtctcggtgt taatccatca
     2221 attgctggat taacaaatgt tactttgtct ccttgaaaga agtctttttg tatccaaaat
     2281 gtataagttt catccaatac tgattctgaa taggatggga ttgccaaact tattgaaaac
     2341 ttgagtgagt ctcccggtgc ataagtttgt tttgtattcc cgtttgcgtc agttacttta
     2401 tttgtaaaat tccagtcaac agagcctttt agtaattgct ttccattaac tagattttta
     2461 gttgtctctc tattgtcaga tgttacggtt gttttgtttt catctgctcc tttttgttca
     2521 tctgattgtg ctatttgttg ggttgttttt gtttgatttt cttctgctcc ggcgaagata
     2581 ttagaccacg gaaccaattg aaaaataagc gcaaccgcaa ccattacaac gaatactttt
     2641 tgccagttgt gttttagcat gataattctc cttttgctac taattattga aattactcat
     2701 agtagacttt ttttgttcta cttgaatagt tttcttaaaa gtatcatact cgctaaaatg
     2761 gctttctgga acaagccaat cagacaaaac tgcctatata gtaaagagaa ttgtgacgtt
     2821 tccgccatat ttacagttca atcacacgta aaaaaatgtt aaaattatac cttttttaat
     2881 gaacaaacct ggtttccttt gatataattg aaaatagttt tctcgggtac atatatagta
     2941 gagataatga aggaggagaa ctatgtggaa aaagcataag tggctaatta ttgctgtatt
     3001 attattggta atttatgtcg ctccattatt tattcttggc gggaacagtc atgtaaggat
     3061 tcatgataac ttggattcta atgtaacttg gtacaaaatg gttttggata gcggggatta
     3121 taccgctaaa gtcgggacag caaatataga tcaaataatg gatgacagcg tccccagaga
     3181 ttcatttgat tcagagtttg ttgggattga ttggctttac atgattttca gcacacccat
     3241 tgcctttgcg atgagtcagt taattacacg tgtatttgca tttttaggat tatttttatg
     3301 ggcaagggat taccttatta aagataaaaa atatctcgtg ccactttatt ttgtttcctt
     3361 agcttttgcg ctaacaccat tttggccatc agggatgttg agtacgcttg gaatgccgct
     3421 tgctctatgg gcatttttaa atattaggaa taataaacgg cgaatttgga atgtggttat
     3481 actgacgttg cttccatttt attctagttt aatattagga ttttgtttct ttttagtaat
     3541 ggttggatgt atttggttgt acgatgtttt caagaaaaaa caagtgaata ttcgattttt
     3601 acttagcatg ctttatatga cgcttctgta tgcacttgta aattatcgtt ttatttatgc
     3661 aatgtttttg caccccgaac cggattcaag gagcgaattt agtctaccag agttatcatt
     3721 tttaagttct atccgactta gctttaaaaa tttcattata ggacacacgc atgaccaggc
     3781 actggctgga tttgttatta tacctgtatt actccttgta cttgcactca ttattatcaa
     3841 acgtgaatgg ggcaaagaaa aactgttttt atggctattt ggctttaatt tattcttatc
     3901 tttttggtat ggattttggt ggtatcgtgg ttggaatgta atcaaagaac acgtggaaat
     3961 catgcggaca tttaactttt cgcgcttcca ttttttacaa ccgtttttat tttatggact
     4021 gtttgcactt gcgattgttt atttaataaa aaaaggaaat tggtggcgaa agttagctta
     4081 tgtggtagtt gcgctgcagc ttgttgttgt tttcgctaat aactctgaga tttactaccg
     4141 cactggaaat ggctcgccaa gcattaatca attttacgcc acggagcaaa tggaagaaat
     4201 taaagattat attggtaaac cgcagtcaag ttaccgtgtc ggaagtattg gtctgcaccc
     4261 gtctgtttcc caagaaagtg gcttttatac tgtcgatggc tatgtgaatt cctatcctct
     4321 tgcttataaa agggctttcc gaaaaattat tgctggtgag ctagacaaga gtcctgtttt
     4381 agaagattat tatgataatt ggggtaatcg ttgttatata ttttctgccg aattaggtaa
     4441 aaaatacgat ttcggcaagg attcgaaaaa acacattaaa cagttagatt ttaattcaga
     4501 ggcatttaaa aaggttggcg gcgagtatat tctatcagcc gttccgattg ataatgcttc
     4561 agaagtcgga ctccagttcg aaaaagcctt cgataataag gattcttact ggaaaatcta
     4621 tttatacaaa gcaactaaat aaaagcgtga ggcgtgattt tttcttaacg aactaatcgc
     4681 gcctttcgct ttttttgtgg tatgattaat aaaaggagtg atgattatga agaaaaccat
     4741 tcagtcagtt ggtgtttggg gcgatagtat tatgaaaggc gttcttttca accctgaaaa
     4801 aaatcgctat acattgctta aaaacaactg cattaaacga gcatccgaaa aacttggcct
     4861 gacttttcaa aatcattcca caatgggtcg tacaatcact aaaggccacg aaattctaac
     4921 aaaagactta gcaaaagatg caacaaatga tatcgccatt atcgaatttg gcggaaatga
     4981 ttgtgatttt aactggacgg aagtttccga aaatccgaca gctgagcaca ttcctagcac
     5041 cccacttaac atttttgaaa cgcaattact tgaaatgatt gcacgactaa aaaaactgga
     5101 tattaaaccc attttaatga cattgcctcc ccttcatgca aaacgttatt ttgatttcat
     5161 tacgagaaat ggactaaata aagataatat tttgcagttt ttaggtggcg atgtagagat
     5221 gatttatcgc tggcaagaac gatatagcaa tacgatttcg cgcatcgcag ccgaaactgg
     5281 tagccatatt attgatgtcc gtgatagttt tctcgctgaa tttcattatg aaaatttgct
     5341 ctgtgctgac ggtattcatc caaacgaggc tggtcatatt gccatgtcac gcaaattcat
     5401 tcagtacgca agttttcata aagcataagg aggaattttt attttacatt tacaaactat
     5461 gactgcttct gatttagaag attttttatc tacagccatt acagattacg caaatgaaaa
     5521 agttgaggcc ggcacatggg atgaagaaga agccttagct aaatcccaag actctttcaa
     5581 caaattgcta tatgacggaa ttactacacc aaatgaatat ctctacagca ttatctcagg
     5641 cgaaaaaatc ggttatattt ggttccatgt ggacgaaact cgctctggta aacatgcttt
     5701 catttatgat tttgtgattt tcgaagcatt ccgtggtaaa ggattcggaa caaaaacttt
     5761 agaagcatta gatgcgcttg cgaaagaaat gcaaattaca aaaatcgaac tacatgtatt
     5821 tgcgcacaat caaacagcta tcggcttata taataaagtt ggttttcaaa a
//
LOCUS       DASEAA010000161         5862 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.161, whole genome shotgun sequence.
ACCESSION   DASEAA010000161 DASEAA010000000
VERSION     DASEAA010000161.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5862
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.161"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..462
                     /locus_tag="U0342_002405"
     CDS             <1..462
                     /locus_tag="U0342_002405"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GHKL domain-containing protein"
                     /protein_id="HEM2423745.1"
                     /translation="ESNNYKISLLQNIHVIELKGLLAVKLIRAQELKIDAILEVVEPI
                     DKISMDSIDLCKVVGILLDNAVEAALTCENPVIRIAFVKKGDSIIIVFANSLPVNMPP
                     IYKIFEEGFSTKGEGRGLGLASLREIMKKYSHVALDTKVTDREVIQELEIM"
     gene            481..1209
                     /locus_tag="U0342_002406"
     CDS             481..1209
                     /locus_tag="U0342_002406"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463584.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2423746.1"
                     /translation="MLPVFICEDNRMQRERLTKYIEDYIMVEHFDMKLELSTGDPFEL
                     VSRMPTHQGMGLYFLDIDLGQPDMNGFELAQEIRKFDPRGFIIFITTHAELSYMTFTY
                     KVEALDYIIKDDIDLLHDRVLACMKQAEERISNDQDMQKYFTFKVSDKKIIHELLDDI
                     LFFETAPTIHKVILHGKNRQVEFYGKLKNIEKMLDESFYRCHRSYIVNKKNIHELDTT
                     KGVVKMSNGENCYASSKLIKSLSL"
     gene            1376..3349
                     /gene="pdeA"
                     /locus_tag="U0342_002407"
     CDS             1376..3349
                     /gene="pdeA"
                     /locus_tag="U0342_002407"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463585.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cyclic-di-AMP phosphodiesterase PdeA"
                     /protein_id="HEM2423747.1"
                     /translation="MSGYFQKRMLKYPLYGLIAATIILSVITFFFSWWLSALVVVGGI
                     ILTVAMFYFEYRLNEDVQLYVSNLTYRIKRSEEEALVEMPMGILLYDEHYKIEWVNPF
                     MSKYFDKAELIGESLEEVGPEFLDVITGNDEKGIMSIAWRDHRFDTIVKRKERILYLY
                     DRTEYYDLNKKFQANKSVFAVIFLDNYDEWAQGMDDRRRSALNNLVTSMLTNWAREHR
                     IYLKRISTDRFMAFLTEEMLKRLEEEKFQILDRIRERTSKQNIPLTLSIGIGYKEDDL
                     IQLADLAQSSLDLALGRGGDQVVIKQPEGKVRFYGGKTNPMEKRTRVRARVISQALQE
                     LITQSDQVFVMGHRYPDMDVIGSSLGVMRIAEMNDRNAYVVVEPGKMSPDVKRLMNEI
                     EEYPNVIKNIVTPQVALENITEKSLLVVVDTHKPSMVINKELLDSATNVVVVDHHRRS
                     EEFVGSPVLVYIEPYASSTAELITELFEYQPDLEQVGKIEATALLSGIVVDTKNFTLR
                     TGSRTFDAASYLRSLGADTILVQQFLKEDITTFTQRSRLVESLEIYHDGMAIATGHED
                     EEFGTVIAAQAADTMLSMEGVQASFVITLRPDKLIGISARSLGQINVQVIMEKLGGGG
                     HLSNAATQLKDVTIAEAEKQLISAIDAYWKGET"
     gene            3352..3798
                     /gene="rplI"
                     /locus_tag="U0342_002408"
     CDS             3352..3798
                     /gene="rplI"
                     /locus_tag="U0342_002408"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463586.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L9"
                     /protein_id="HEM2423748.1"
                     /translation="MKVIFLKDVKGKGKKGETKNVADGYANNFLIKNGYAVEANNAAL
                     STLSAQKKKEDKLAAEELAEAKALKEKMENLTVELKAKSGEGGRLFGSITSKQIAQTL
                     EKTHGIKIDKRKMDLPEAIRALGHTKVPVKLHHEVTATLDVHVSEE"
     gene            3823..5175
                     /gene="dnaB"
                     /locus_tag="U0342_002409"
     CDS             3823..5175
                     /gene="dnaB"
                     /locus_tag="U0342_002409"
                     /EC_number="3.6.4.12"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463587.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="replicative DNA helicase"
                     /protein_id="HEM2423749.1"
                     /translation="MDNNFQDRTPPQNIEAEQAVLGAIFLEPNALITASEILMPDDFY
                     RTGHQIIFETMLDLNDHGKAVDVLTVYEALAAKGNLEDAGGLPYLTELSGAVPTAANL
                     EYYAHIIEDKALLRRLIRTATQIATDGYSREDELDMLMDEAEKSILEVSQRKNVGAFK
                     NIKDVLVKTYDDIEILHNRKGDITGIPTGFNELDKMTAGFQRNDLIIVAARPSVGKTA
                     FALNIAQNVATKTDENVAIFSLEMGAEQLVMRMLCAEGNINAQNLRTGALTSDDWQKL
                     TIAMGTLSNSGIYIDDTPGVRVNEIRSKCRRLKQETGLGMIVIDYLQLIAGSGRGGEN
                     RQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADI
                     VAFLYREDYYDREGENDGTIEIIIAKQRNGPVGDVKLAFVKEYNKFVNLEVRYDDAMA
                     "
     gene            5433..>5862
                     /locus_tag="U0342_002410"
     CDS             5433..>5862
                     /locus_tag="U0342_002410"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEM2423750.1"
                     /translation="MSSVVVVGTQWGDEGKGKITDFLSENAEAIARYQGGNNAGHTIK
                     FDGVTYKLHLIPSGIFYKEKISVIGNGMVVDPKALVEELKYLHDKGVDTSNLRISNRA
                     HIILPYHIRIDEADEERKGANKIGTTKKGIGPAYMDKAARV"
BASE COUNT         1847 a          862 c         1435 g         1718 t
ORIGIN      
        1 gaatctaaca actataagat ttctttgctt caaaatattc atgtgattga actaaagggt
       61 ttgctagctg ttaaattaat acgagctcaa gagttgaaaa ttgatgcaat tttagaagta
      121 gttgaaccga ttgataagat ttcgatggat agcatagatt tgtgtaaagt tgtcgggatt
      181 ttgctagata atgcggttga agcagcgcta acttgtgaaa atccagttat tcgaatcgct
      241 tttgtgaaaa aaggtgatag tataattatt gtatttgcga atagtttacc agtaaatatg
      301 ccaccgattt ataaaatatt tgaagaaggt ttctctacaa aaggagaggg tcgtggatta
      361 ggccttgcta gtttgcggga aattatgaag aaatattcgc acgttgcctt agatacgaaa
      421 gtgaccgata gagaagttat tcaagaatta gaaattatgt agaagaatgg ggatgaattt
      481 atgctaccgg tttttatttg tgaagataac agaatgcagc gagaaaggtt aacgaaatat
      541 attgaagact atattatggt tgaacatttt gatatgaagt tagaactttc aacaggagat
      601 ccgtttgagt tagtatcacg aatgcctaca catcaaggta tggggcttta ttttttagat
      661 attgatttag ggcagccgga catgaatggt tttgaattag ctcaggaaat tcggaagttt
      721 gatccgcgtg gtttcattat ttttattaca acacatgcgg agttaagtta tatgactttc
      781 acgtataagg tggaagcgct tgattacatt attaaagacg atattgattt gctgcatgac
      841 cgggtacttg cctgtatgaa gcaagcagaa gaacggattt ccaatgatca agatatgcag
      901 aagtatttta cgtttaaagt gtcggataag aagattattc atgaactttt agacgatatc
      961 ttattttttg aaacagcccc aactattcat aaagtaattt tacatggcaa aaatcgccaa
     1021 gtggaatttt atggtaagtt gaagaatatc gagaaaatgt tggacgaatc attttatcgg
     1081 tgccacaggt cgtatattgt gaataagaaa aatattcatg agctggatac gacaaaaggt
     1141 gtggtgaaga tgtctaacgg tgaaaattgt tacgcatcat cgaaattaat taaaagcttg
     1201 agtttataaa agtggcctta aaggtcgctt tttttgtaca gtggcaagtt tggatttgat
     1261 gaaatgggta aatataggta aaataatagt gatgaattgt tagttaagtt tatgttatga
     1321 tatagatact caaattcaga caaaaggtat gtaaaaaaat ggggagctgg atgaaatgtc
     1381 aggctatttt caaaaacgaa tgcttaaata tccactatac ggtctgattg cagcgacaat
     1441 tattttgagc gtaatcacgt tctttttttc gtggtggcta tcggcgttag ttgttgttgg
     1501 cggaattatt cttacggttg cgatgtttta ttttgaatat cgcttgaatg aagatgtgca
     1561 actatatgtt tctaatttaa cgtatcggat taagcgtagt gaagaagaag cgcttgttga
     1621 gatgccgatg ggaatacttc tgtatgatga acattacaaa atcgaatggg ttaacccgtt
     1681 tatgtcgaaa tactttgata aggcagagct aattggggaa tctttggaag aagtaggacc
     1741 tgaatttttg gacgttatta ctgggaatga tgagaagggg attatgtcga ttgcttggcg
     1801 tgatcaccgt tttgatacga tagtaaagcg taaggaacgg attttgtatt tatatgaccg
     1861 aacagaatat tatgatttaa ataagaagtt tcaggcgaat aaatctgttt ttgcggttat
     1921 tttcttagat aattatgatg aatgggcgca gggcatggat gatagacgtc gcagtgcttt
     1981 aaataatttg gtgacgtcga tgttgactaa ctgggccaga gaacatcgta tttatttgaa
     2041 acggatttcg acagaccgct ttatggcctt tttgacggag gaaatgttga agcggttgga
     2101 ggaagagaag tttcaaatct tggaccggat tcgcgaacgg acgtcgaagc aaaatattcc
     2161 attaacgctt agtattggga ttggttataa ggaagatgat ttgattcagc tggccgattt
     2221 ggcacagtct agtctggacc ttgctttagg gcgcggcgga gatcaggtcg taattaagca
     2281 acctgaagga aaagtgcgtt tttatggcgg gaaaacaaat ccgatggaaa aacggactcg
     2341 tgttcgcgca cgtgttatct cgcaagcctt gcaagagttg attacgcaaa gtgaccaagt
     2401 ttttgttatg gggcaccgct atccggatat ggacgtaatt ggttcgagtc ttggagtgat
     2461 gcggattgcg gagatgaatg atcggaatgc ttatgtggtc gtggaacctg gcaaaatgag
     2521 tccagatgtg aagcgattaa tgaatgaaat tgaagaatat ccaaatgtga ttaaaaatat
     2581 agttacaccg caagtcgcgc tagaaaatat cacggagaag agtttgcttg tggttgttga
     2641 tacgcacaaa ccttcgatgg ttattaataa ggaattgctt gactcggcta cgaatgtggt
     2701 ggttgtcgat caccatcgtc gttcagagga atttgttgga agcccggtgc ttgtttatat
     2761 cgaaccatat gcgtcatcta ctgccgaatt gattacggag ctgtttgagt atcaaccgga
     2821 tttagagcag gttgggaaaa tcgaggcaac ggcgcttctt tccgggattg tggttgatac
     2881 gaagaacttt acgctacgga ctgggtcgcg aacgttcgat gcggcgagct atttacggtc
     2941 gcttggtgcg gacacgattt tggttcagca atttttgaag gaagatatta ctacttttac
     3001 tcagcggagt cgtttagttg agtcgcttga aatttatcat gatggtatgg cgattgcgac
     3061 tggacatgaa gacgaggaat ttggcacagt tatagctgcg caggcggcag atacgatgct
     3121 ttcgatggaa ggcgtgcagg catcctttgt tattacgcta cgtccggata aattaatcgg
     3181 gattagcgcg agatcgcttg gtcaaatcaa tgtgcaagtc attatggaaa aactaggcgg
     3241 tggcggacat ttatcgaatg cagccacaca gcttaaagat gttacaattg cagaagcaga
     3301 aaaacaatta attagcgcca ttgatgcgta ttggaaggga gaaacataat tatgaaagtt
     3361 attttcttga aagacgtaaa aggtaaaggt aaaaaaggtg aaactaaaaa tgttgctgat
     3421 ggttatgcaa acaatttttt aattaaaaat ggttacgcag ttgaggctaa taatgcggct
     3481 ttaagcactc tttcagcgca aaagaaaaaa gaagataaat tagctgctga agaactagct
     3541 gaagcaaaag ctttgaaaga aaaaatggaa aatttaacag tggaattaaa agcgaagtct
     3601 ggtgaaggcg gcagattgtt tggttctatt acatctaaac aaattgctca aacgcttgaa
     3661 aaaacacatg gtattaaaat agataaacgt aaaatggatc taccagaggc aattcgagct
     3721 ttagggcata cgaaggtgcc ggtgaagttg caccatgaag taacggcaac acttgatgta
     3781 catgtgagtg aagaataatt tttcttaagg gagcgtaaga cagtggataa taatttccag
     3841 gacagaacac caccacaaaa tattgaagcc gaacaagctg tactgggcgc gatatttctt
     3901 gagccaaatg cgctgattac tgcttctgaa attttaatgc cggatgattt ttatcgaact
     3961 ggtcaccaaa tcattttcga aacgatgctt gatttgaacg accacgggaa ggctgtcgat
     4021 gttttaacag tatatgaggc gcttgctgcc aagggtaatt tagaagatgc gggcggtttg
     4081 ccttatttga cggaattatc cggtgctgta ccgactgcgg ctaacttgga atactatgcc
     4141 catattatcg aggacaaggc gcttctaaga cgtttaatta gaactgctac ccaaattgca
     4201 acagatggat attcgcgcga agacgagctc gatatgctta tggacgaagc ggaaaagagt
     4261 atcttggaag tttcgcaacg taaaaatgtt ggtgcattca agaatattaa agatgtccta
     4321 gttaaaactt atgatgatat tgaaattttg cataatcgca aaggtgatat tactgggatt
     4381 ccaactggat ttaacgagct ggataaaatg acagctggat ttcagcggaa tgatttaatt
     4441 attgttgccg cgcgtccttc tgttggtaaa acagcattcg ccctaaacat tgcgcaaaat
     4501 gttgcaacga aaaccgacga gaatgtggcc atttttagtt tggaaatggg tgcggaacaa
     4561 cttgttatgc ggatgctttg tgcggaagga aatattaatg cgcagaattt acggacgggt
     4621 gctttaacga gcgatgattg gcaaaagctg acaatcgcga tgggtacact ttctaattcg
     4681 gggatatata ttgatgatac gccgggtgtt cgggtgaatg aaattcgttc caaatgtcgc
     4741 cgtttaaaac aagaaactgg tcttggtatg attgtgattg attacttgca actgattgca
     4801 gggagcggtc gtggtggcga aaatagacaa caagaagttt ctgaaatttc tcggtcgtta
     4861 aaagctttgg cgcgagaact tgaagtgccg gttattgcac tttcgcagtt atctcgtagt
     4921 gtagagcaac gtcaagataa acgcccaatg atgtcagata ttcgtgaatc tggttcgatt
     4981 gagcaagatg ccgatatcgt agccttttta taccgggaag attactatga ccgggaaggt
     5041 gaaaatgatg gcacgattga gattattatt gcgaaacaac gtaatggtcc agttggtgac
     5101 gtgaaactag cctttgtaaa agaatacaat aagtttgtga atttagaagt gcggtacgac
     5161 gacgcaatgg cttaatgagg aaaccttgtg aaattcaaat tagatttgga gttcgcaagg
     5221 tttttatttt atgcaaaaag gtaacgtatt actattaatg gactttgaaa ttcccgtaaa
     5281 aagattaaaa aagcgaacga taaaattacc ttacaaatca atgttcgtaa atccattgac
     5341 tattttggtg gcaaacggta caatgtatag tggaaaatga agaggctatg aaaacgcata
     5401 gctatcaaag accaattaaa tgaggtgttt aaatgtcttc agttgttgta gtaggaacac
     5461 agtggggcga tgaaggaaaa gggaagatta cagattttct ttccgaaaat gcagaagcga
     5521 ttgctagata tcaaggtggg aacaatgcag gccatacaat taagtttgat ggcgtaacgt
     5581 acaaattaca cttaattcca tcaggtatct tttacaaaga aaaaattagt gttattggta
     5641 acggtatggt tgtggatcca aaagctttag tggaggaatt aaaatatctt catgataaag
     5701 gcgtggatac ttctaatttg cgtatttcta accgtgcgca cattatttta ccatatcaca
     5761 ttcgtattga tgaagctgac gaagaacgta agggcgcaaa caaaatcggt acaacgaaaa
     5821 aaggtattgg cccagcttac atggataaag cagcgcgtgt ag
//
LOCUS       DASEAA010000162         5846 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.162, whole genome shotgun sequence.
ACCESSION   DASEAA010000162 DASEAA010000000
VERSION     DASEAA010000162.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5846
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.162"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..782)
                     /locus_tag="U0342_002411"
     CDS             complement(<1..782)
                     /locus_tag="U0342_002411"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464777.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2423751.1"
                     /translation="MNKNKTGWNIAKIIVGALIFSLAVNVFAIPNNLGEGGVTGLTMM
                     LYYLLGWTPAVTTFIFNGILLIIGYKFLDRMTIVWTIVAISFTSIFLHFSEPLAFVAN
                     QTIVAAIFAGLMMGIGMGLIMNGGGTTAGSAILAKIANKYLGWNTSYALLFFDLLVVI
                     PSVFVIGFENMLFTIVSLYISTKVLDFILEGYNPKKSVTIISDYYEEIATEIDANLER
                     GITLFNGQGFYMRQDKKILYIVISRDQLLPLTKIVNKYDEKA"
     gene            complement(1112..1249)
                     /locus_tag="U0342_002412"
     CDS             complement(1112..1249)
                     /locus_tag="U0342_002412"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014092656.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423752.1"
                     /translation="MTKVILTIFAIIVPAFLGFILAYQIYKKKTATYMPLKNEFVHWA
                     K"
     gene            1400..2113
                     /gene="treR"
                     /locus_tag="U0342_002413"
     CDS             1400..2113
                     /gene="treR"
                     /locus_tag="U0342_002413"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trehalose operon repressor"
                     /protein_id="HEM2423753.1"
                     /translation="MNKKNKFFDIYLELEQDITSGVYPAGTLLPSENVLAKRFSVSRE
                     TIRKALVLLLENGCIQKLQGKGSIVIDRERYSFPVSGLTSFKELQKSEHMNATTEVIR
                     NERTTLPDRIADFAGLPHGSNCLAILRVRYLEGEATILDYDYLLDKTEPIANEILEDS
                     LYQYLENEKGYEISYAQKEITVEPLNAEDKKYLALHGDTHVVVVKSTVFLKDTTLFQY
                     TESRHRLDKFRFIDFARRR"
     gene            complement(2144..3790)
                     /gene="treC"
                     /locus_tag="U0342_002414"
     CDS             complement(2144..3790)
                     /gene="treC"
                     /locus_tag="U0342_002414"
                     /EC_number="3.2.1.93"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha,alpha-phosphotrehalase"
                     /protein_id="HEM2423754.1"
                     /translation="MTKFAQKTIYQVYPKSFYDTTGDGTGDIPGITAKLDYLQKLGIE
                     MIWLNPFYPSPQNDNGYDIADYTAVDPLFGTMDDVTTLIKEAKKRNIGIMIDLVLNHT
                     STEHPWFKKALAGDPFYRDFYYFRPAKADGSPPTNWVSKFGGNAWEKLPDSSEYYLHL
                     YDVTQADLDWANPNVREALFDVVNFWIDKGVEGFRLDVLNVIAKPKFLEDDFEGDGRR
                     FYTDGPGIHAYLKELHERTFGDKPIITVGEMSSTDIDNCIRYSNPDEKELSMVFHFHH
                     LKVDYPDGEKWRLADVNFENLKSIFHTWQVAMSEENGWDALFWNNHDQPRALGRFASD
                     KPEHYYHSATLLGATIHFMRGTPFVYMGEEIGMMNPKFPTIDDYVDVETLNHFDILQK
                     NGLSEQEVMAIIKERSRDNSRTPMQWDDSQNAGFTTGTPWLKVADNASEINVQAALSN
                     KTSIFYFYQKLIALRKEYPVIQTGDYTPYWTDEDLIIAYKRSNEITSLLSIHHFGSTT
                     KKIQLPNEFLNAKVLLSNYERQTISSELELAPYETLTLIR"
     gene            complement(3809..5293)
                     /gene="treP"
                     /locus_tag="U0342_002415"
     CDS             complement(3809..5293)
                     /gene="treP"
                     /locus_tag="U0342_002415"
                     /EC_number="2.7.1.201"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464780.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS system trehalose-specific EIIBC component"
                     /protein_id="HEM2423755.1"
                     /translation="MVDYTKDASALLELIGGKENISSVTHCATRMRFVLQNPDNADVE
                     AIEDIPAVKGTFTQAGQFQVIIGNDVAIFYNEFSKISGVEGVNKEDAKVDAKKNMSIL
                     QRLLAGLAEIFTPLIPAIVVGGLILGFRNVIGDIKFLEDGTKTIVDVYPFWAGVYSFL
                     WLIGEAVFHFLPVGITWSIAKKMGTTQILGIVLGLTLVSPQLLNAYSVVETKAGDIPV
                     WDFGFAQVQMIGYQAQVIPAIMAGFLLAYLEIWLRKFIPNAISMIFVPFFALVPTVLA
                     AHVILGPIGWKIGDAISNVVYAGLTGGLSWLFAALFGFLYAPLVVTGLHHMTNAIDLQ
                     LMSQFGGTNLWPMIALSNIAQGSAVLAIIFLHRGNEKEEQVSIPATISCYLGVTEPAM
                     FGINLKYLYPFVAAMIGSAIAAVVSVSSGVMANSIGVGGLPGILSINPKYYAVFAVCM
                     LITIVVPFILTVLFRKYNILNKVDTAPIRTFGKKEYRESAKTTN"
     gene            5411..>5846
                     /locus_tag="U0342_002416"
     CDS             5411..>5846
                     /locus_tag="U0342_002416"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929572.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2423756.1"
                     /translation="MKHVRTAAIITHQNKILLHSNQEEDYWTLPGGAVENESTKEGLK
                     REMKEELGEDVAILELSIIAENRFLYRGEEIDSIEFYYAVKLLPESSLLNQPTFTKIE
                     EFGQYGEEAYKLHFKWFDIDKLKNITILPTFLETELANLSSKN"
BASE COUNT         1969 a         1137 c         1037 g         1703 t
ORIGIN      
        1 aatgctttct catcatattt gttgacgatt ttggtgagcg gcagtaattg atcacgactt
       61 attacgatat aaagaatttt tttatcttga cgcatataga aaccttgacc gttgaaaagg
      121 gtaataccac gctctaaatt cgcatcaatt tcagttgcaa tttcttcata ataatccgat
      181 ataatcgtga cagatttttt aggattgtaa ccttcaagaa tgaaatcaag tactttggtt
      241 gaaatataaa gcgaaacgat ggtaaatagc atgttttcaa aaccgattac aaaaacagaa
      301 ggaataacaa caagtaaatc aaagaatagc aacgcataac tcgtattcca accaagatat
      361 ttattagcaa ttttcgctaa aatagcgcta ccagcagtag ttccgccacc attcataatt
      421 agtcccatac caattcccat cattaatccg gcaaaaatgg ctgcgacaat cgtttgattt
      481 gccacgaaag caagcggctc agaaaaatgt aaaaagatcg aagtgaaact aatagcaaca
      541 attgtccaga caatcgtcat tcgatcaaga aacttgtaac caataataag taaaatacca
      601 ttaaatataa aagtagtgac tgcgggagtc caaccaagca agtaataaag catcattgtt
      661 agcccagtaa cgccgccttc tcctaaatta ttcgggatag caaaaacgtt gacagctagc
      721 gagaaaataa gcgcccccac gataattttt gcgatgttcc aaccagtttt atttttgttc
      781 atctccattt ctcctttcca tgcaaaaaaa gacccaagaa taccactaaa caggcactct
      841 ggagtctttt tataaaaaaa gcattaactg acatctttgt cattaattgt ctcaccataa
      901 aaaattgcta ttcatttcaa cacaatttac aatataccat aaaaaataag caccttcaag
      961 cctttttaag tataagtaat tagccgaaaa tcgctaaaaa tggcattaaa ttaagtagaa
     1021 ataaacctac aagaacacta ataacaattt tgatgacaag tggtttttca ctttctgttt
     1081 ttttcaattt gttttcctcc ttaatgtgcg cttatttagc ccaatgtaca aattcatttt
     1141 ttaatggcat ataagtggct gtttttttct tatagatttg gtaagcaagt ataaatccga
     1201 gaaacgcagg aacgataatt gcaaaaatag ttaaaataac tttagtcata gaaaatacct
     1261 cctcttaaat caaaacacat gttcagacct tactactaat agtgtaccaa atttcacgtg
     1321 attttggtaa taaagcgagc tagcaaattt cggttacaat tatgggtaaa tgtgctacaa
     1381 tagccttggg tgagtaaatt tgaataaaaa aaataagttt tttgacattt atttagaatt
     1441 agagcaagac attacatcag gcgtttatcc agcaggcaca ctacttccaa gtgaaaatgt
     1501 cctggcgaag cgtttttcgg tatcccgtga gaccattaga aaagcacttg tattattgct
     1561 tgaaaacggc tgtattcaaa agctccaagg aaaaggatcg attgtcattg accgagaacg
     1621 ctattctttt ccagtctctg gtttaactag ttttaaggaa ttacaaaaat ccgaacatat
     1681 gaatgcgaca acggaagtca tccgaaatga acgaaccact ttaccagatc gaattgctga
     1741 ttttgctggt cttccgcacg gctcaaactg cttagctatc ctcagagtgc gctatttaga
     1801 aggagaggca actattttgg attacgatta tttattagac aaaactgaac caattgcgaa
     1861 tgagatttta gaagactctt tgtatcaata cttagaaaat gagaaaggct atgaaatcag
     1921 ttatgctcaa aaagaaataa ccgtggaacc gctgaacgcc gaagataaaa aatacttagc
     1981 attacatggt gatacgcatg tagttgtcgt aaaaagtacc gtgtttttaa aagatacaac
     2041 actttttcaa tacacagaat cgcgtcaccg actggataaa ttccgtttta tagattttgc
     2101 aagaagacgc taaaaagcct gagaattgtt tctcaggctt tttttatcga attaaagtta
     2161 atgtttcata aggtgctaat tccagctcag aactgattgt ttgacgttca taattagaaa
     2221 gaagtacttt agcatttaaa aactcatttg gtagttgaat ttttttcgta gtcgagccaa
     2281 aatggtgaat ggaaagaagc gaagtaattt catttgaacg cttataggct ataatcaaat
     2341 cttcatccgt ccaatatggc gtataatcac ccgtctgaat gacagggtat tctttccgta
     2401 atgcaataag cttttggtaa aaatagaaaa tgctcgtttt attagataag gctgcttgaa
     2461 catttatttc acttgcatta tccgctactt ttagccatgg agtaccagtt gtaaagccag
     2521 cattttgcga atcatcccat tgcataggtg tccgactatt atctcgcgaa cgctctttga
     2581 taatcgccat aacttcttgc tcactaagtc cgtttttttg taaaatatca aaatggttga
     2641 gcgtttccac atccacataa tcatcaatcg taggaaattt tggattcatc atcccgattt
     2701 cttcccccat ataaacaaac ggtgtcccgc gcataaagtg aatcgttgcg ccaaggaggg
     2761 ttgccgaatg ataataatgt tccggtttgt cggaagcaaa gcgaccaagt gctcgaggtt
     2821 ggtcatggtt gttccagaaa agcgcatccc atccattttc ttctgacatc gcgacttgcc
     2881 acgtatggaa aatagatttt aagttctcga aattcacatc cgctaaacgc catttttctc
     2941 catcaggata gtctaccttc aaatgatgga aatgaaaaac catcgataat tctttttcgt
     3001 ctggattact ataacgaatg cagttgtcaa tatctgtaga ggacatttct ccaaccgtta
     3061 taattggctt gtcgccaaaa gttcgttcat gtagttcttt taagtaagca tgtattcctg
     3121 gtccatctgt ataaaaacgg cggccgtcgc cttcaaaatc atcttctaaa aacttaggtt
     3181 tggcaatcac atttaataca tctaaacgaa aaccttccac gcctttatca atccaaaaat
     3241 tcacgacatc aaagagtgcc tcgcgtacat tcggattggc ccagtctaaa tcagcttgcg
     3301 taacatcgta taaatgcaaa tagtactcag aggagtcagg caatttttcc caagcattac
     3361 caccgaattt ggaaacccaa tttgttggag gggaaccatc ggcttttgct gggcggaaat
     3421 agtagaaatc acgatagaat ggatcaccag caagcgcttt tttaaaccaa ggatgctctg
     3481 ttgaagtatg attcaatact aagtcaatca taataccaat atttcttttt ttcgcttcct
     3541 tgataagcgt tgtcacatcg tccatcgtac caaataaagg atcaaccgcg gtatagtcag
     3601 cgatatcata gccgttatca ttttgcggag aaggataaaa tggattcagc caaatcatct
     3661 caattccgag tttttgtaaa taatcaagct tggcagtgat accgggaata tccccagtac
     3721 catcgccagt cgtatcataa aaggatttcg gatacacttg ataaattgtt ttttgagcaa
     3781 actttgtcat aaagggaagc ctcacttttt agttggttgt ttttgcagat tcacgatact
     3841 cctttttacc aaacgtacga attggtgcag tatctacttt gtttaaaata ttatatttgc
     3901 ggaataatac agttagaatg aaaggaacaa caatcgttat taacatacat actgcaaaaa
     3961 cggcgtaata tttagggtta atggacaaga ttccaggtag tcctccgaca ccaattgagt
     4021 tagccataac accactagat acagaaacca cagccgcaat tgccgaacct atcatggcag
     4081 ctacaaatgg atataagtat tttaaattaa tcccgaacat cgcaggttcc gtaacaccaa
     4141 ggtaacaaga aatagttgct ggaattgaaa cttgttcttc tttttcattg ccacgatgta
     4201 agaaaataat tgctagaaca gcggaccctt gggcgatgtt agaaagtgca atcatcggcc
     4261 agagattcgt tccaccaaat tgactcatta attgtaagtc gatggcgttg gtcatatgat
     4321 gcagtcccgt gacaacgagc ggggcatata ggaagccaaa tagtgcggcg aataaccaac
     4381 ttagtccacc agtcaagcca gcataaacga cgttcgaaat cgcgtcgcca attttccaac
     4441 caattggtcc aagaataaca tgagctgcaa gaacagtagg tacgagagca aagaatggaa
     4501 cgaaaatcat cgaaatggca tttggaataa atttacgcaa ccaaatttcg agataggcta
     4561 gtaagaatcc ggccataatg gcaggaataa cttgcgcttg atacccaatc atctgtactt
     4621 gagcaaagcc aaagtcccaa actggaatat cgcctgcttt tgtttcaaca acgctataag
     4681 catttagtaa ttgcggggaa acaagcgtta aaccaaggac aatcccaaga atttgtgtgg
     4741 ttcccatttt tttcgcgatg gaccatgtaa ttccaactgg taggaagtgg aatacagcct
     4801 caccgataag ccataagaaa ctataaacac cagcccaaaa tggataaaca tccacaatcg
     4861 ttttcgtgcc gtcttctaaa aacttaatat ctccaattac gttacggaaa ccgagaataa
     4921 gacccccaac aacaattgct ggaattaatg gagtgaatat ttcagctaaa ccagcaagta
     4981 aacgctgaag aatactcata tttttcttcg catctacttt ggcatcttct ttattgacac
     5041 cttccacacc actaattttt gaaaattcat tataaaaaat agctacatca ttacctataa
     5101 ttacttgaaa ttgaccagct tgtgtaaatg tcccttttac tgctggaatg tcttcgatgg
     5161 cttcaacatc ggcattatct ggattttgca aaacaaaacg cattctcgta gcacaatgtg
     5221 tgacagatga tatattttct ttgccaccaa ttaactctaa aagagcgctt gcatcttttg
     5281 tatagtcaac cataaaactt cctccttttt taacttgtat atacaagttg ttcgccatta
     5341 ctatactata aataatttga aagcgcaacc actttatttg tgctaaaata aaaaagaagg
     5401 aggagtggcc atgaaacacg ttagaactgc agcaattatc acgcatcaaa acaaaatttt
     5461 gctccactca aaccaagaag aagattactg gacacttccg ggcggtgcag tggaaaatga
     5521 atcaacaaaa gaaggattaa aacgtgaaat gaaagaagaa ctcggggaag atgtggctat
     5581 tttagaattg agcattattg cggaaaatcg ctttttatat cgcggcgaag aaatagatag
     5641 tattgagttt tattatgcgg ttaaactgtt accagagagc agtttactta atcaacctac
     5701 atttacaaaa atagaagaat ttggtcaata cggggaagag gcatataaac tgcattttaa
     5761 atggttcgat atagacaagt tgaaaaatat caccatttta ccaacatttc tcgaaacaga
     5821 gctagcaaat ctttcaagta aaaata
//
LOCUS       DASEAA010000163         5832 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.163, whole genome shotgun sequence.
ACCESSION   DASEAA010000163 DASEAA010000000
VERSION     DASEAA010000163.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5832)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5832)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5832
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.163"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(27..1088)
                     /locus_tag="U0342_002417"
     CDS             complement(27..1088)
                     /locus_tag="U0342_002417"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464879.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminopeptidase P family protein"
                     /protein_id="HEM2423757.1"
                     /translation="MSKLTKIQETLGKEKIEAVLVTSEFNRRYVSGFTGTSGVALILP
                     EKAYFVTDFRYTEQAAKQAEGYEIVQHTGPIFDTVEDLLIKNDTKTLHFEADYVTVSE
                     FKQMERVFNRQLIPLTGFFEEMRKVKTASELKAIRTACDIADAAFAHIIQFIKPGMAE
                     IEVSNELEFFMRRAGATSSSFDTIVASGVRSALPHGVASDKKIEVGDFVTMDYGCYYD
                     GYCSDMTRTIAVGEPAEKLKEIYQITLDAQLKVIDSLKPGMTGIEADAIARDYISSFG
                     YGDAFGHSLGHGIGLEIHEGPNLSFKSPQKLEVGHVVTDEPGIYLPGIGGVRIEDDLL
                     ITETGNEILIHSPKELIIL"
     gene            1268..2233
                     /locus_tag="U0342_002418"
     CDS             1268..2233
                     /locus_tag="U0342_002418"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464878.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1385 domain-containing protein"
                     /protein_id="HEM2423758.1"
                     /translation="MSKQNVPSYGGQAVVEGVMFGGRKQTVTAIRRIDGSLEYFYLEK
                     NSPVWVMRMKKIPFLRGIVALIESSAIGSKHLAFATDRYDEDPNNPVEEEKIEKKESK
                     VAMWLGVAVIGILSFVFAKFVMTLIPVFLAELFRPIVPGDTAQVFLESLFKLILLLTY
                     IFAVSQTPIIKRVFQYHGSEHKVINCYEENLPLTVENVQKQSRLHYRCGSSFILFTVI
                     VGMFIYLLVPTDPLWLRVVDRILLIPVVLGVAFEVLQLTNKCRNIPVLKYLGVPGLWL
                     QLLTTKEPSDDQVEVAIASFNELLRVEKEGAPVDVAEPENLELLE"
     gene            2246..2518
                     /locus_tag="U0342_002419"
     CDS             2246..2518
                     /locus_tag="U0342_002419"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423759.1"
                     /translation="MKKYPLIVIILLALVGIGLLMGGFKSFFTLIISVLIGALIFTLL
                     LRFFTNRKTDSNYQKAVKQSKNLHDPKKKTKKKRKSSFKVIDGGKK"
     gene            2580..2960
                     /locus_tag="U0342_002420"
     CDS             2580..2960
                     /locus_tag="U0342_002420"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464876.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhodanese-like domain-containing protein"
                     /protein_id="HEM2423760.1"
                     /translation="MISWIIAIIILVILLGYEIYQFVMRRKAVKVLTEEEFKKGYRKA
                     QLIDVREPNEFDAGHILGARNIPVTQMKNRTTEIRQDLPVYLYCQTAQRSNRAAIMLY
                     KRGYKQVYQLKGGYRKWTGKTKSK"
     gene            complement(3001..4467)
                     /gene="gcvPB"
                     /locus_tag="U0342_002421"
     CDS             complement(3001..4467)
                     /gene="gcvPB"
                     /locus_tag="U0342_002421"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464875.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPB"
                     /protein_id="HEM2423761.1"
                     /translation="MNLEETMPLVFERSIPGRIGFSLPESDVPETKASDYFEQAYIRS
                     VPADLPELSELEIMRHYTNLSNHNFGVDSGFYPLGSCTMKYNPKINEKVARFPGFANI
                     HPNQPESSVQGALELLYDLQTSLVEITGMDEVTLQPAAGAHGEWTGLMLIRAFHEKNG
                     DTKRTKVIIPDSAHGTNPASAAVAGFDVVTVKSNEKGLVDVADLKKVVGEDTAALMLT
                     NPNTLGLFEKDIVEMAEIVHEAGGKLYYDGANLNAIMAKVRPGDMGFDVVHLNLHKTF
                     TGPHGGGGPGSGPIGVKKELIPFLPTPVLTKKEEGYTFDYNYPDSIGRVKPYYGNFGI
                     NVRAYTYIRTMGPDGLKLVTEYAVLNANYMMRKLQEAYDLPFDQVCKHEFVLSGNRQK
                     KLGVRTVDIAKRLLDHNFHPPTVYFPLIVGEAIMIEPTETESKETLDSFIDTMLKIAK
                     EAEENPEIVQEAPHSTYVKRLDETRAARKPILRYQKEV"
     gene            complement(4464..5810)
                     /gene="gcvPA"
                     /locus_tag="U0342_002422"
     CDS             complement(4464..5810)
                     /gene="gcvPA"
                     /locus_tag="U0342_002422"
                     /EC_number="1.4.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464874.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminomethyl-transferring glycine dehydrogenase
                     subunit GcvPA"
                     /protein_id="HEM2423762.1"
                     /translation="MAKHRYLPMTEQDEKEMLDVIGVKSIDDLFQDIPEKIRFKRDYD
                     LKPAKSEPALLRELSKLASKNANTTEYASFLGAGVYSHYIPTVVDHVISRSEFYTAYT
                     PYQPEISQGELQAIFEFQTMIAELTGMDLANSSMYDGGTALAEAAMLASGHTKRKKIL
                     ISGAVHPESSNVLKTYATGQHIEVEVIPELDGKTDIEALKKALSDDIAGFVVQYPNFY
                     GQVEPLAELEKLVHENNSLLLVSSNPLSLGLLTPPGEFGADIVVGDSQVFGIPESFGG
                     PHCGFFAVTNKLMRKVPGRLVGETVDENGKRGYVLTLQAREQHIRRDKATSNICSNQA
                     LNALASSVAMATLGKTGLVEMAKQNLDKSHYAKQKFREKGFEVLFSDGFFNEFVVKLS
                     KPIKEVNESLLDEGIIGGYDLGFYEEKYENHMLVAVTEMRTKEEIDAFVASLEGAK"
BASE COUNT         1755 a         1138 c         1031 g         1908 t
ORIGIN      
        1 aaaacacaca aagttacaaa ggaattttat aaaataatta attcttttgg tgaatgaatt
       61 aaaatctcat tacctgtttc tgtaattaag agatcatctt caattctaac gccaccgatt
      121 cctggtaaat aaattcctgg ttcatccgtc acaacatgtc cgacttctag tttttgaggg
      181 ctcttaaagg ataaattagg tccttcgtga atttctagtc caataccatg tcctaaagaa
      241 tgtccaaatg catcgccata gccaaaagaa gaaatataat cacgtgcaat agcatctgct
      301 tcaattccag tcatacctgg ttttaagcta tcaattacct ttaattgcgc atctaacgta
      361 atttggtaaa tttcttttaa tttttcagca ggttcaccga ccgcgatagt tcttgtcata
      421 tctgaacaat aaccgtcata ataacagccg taatccattg taacgaaatc gccaacttcg
      481 atttttttat cagaagcaac accatgcggt aacgcagaac gaacaccaga tgcgacaatt
      541 gtatcaaacg acgaggaagt agctcccgca cgtctcataa agaattctag ttcattagat
      601 acttcgattt cagccatgcc tggtttgata aattgaatga tatgtgcaaa agctgcatca
      661 gcaatatcac aagctgtgcg gattgctttt agttcacttg ctgttttcac tttacgcatt
      721 tcttcaaaga agccagtaag tgggattaat tgacgattaa atacgcgctc catttgttta
      781 aattcagata cggtcacata atccgcttca aaatgtagtg tttttgtatc atttttaatt
      841 aataaatctt ctactgtatc aaaaatcgga ccagtatgtt gtacaatttc gtatccttct
      901 gcttgttttg ctgcttgttc cgtatatctg aaatcagtta caaaataagc tttttcaggt
      961 aaaattagcg ccacaccact tgttccagtg aaacctgata cataccttct attaaactca
     1021 cttgtgacaa gaacggcttc tatcttttcc ttgcccagcg tttcttgaat tttagttaat
     1081 ttagacattt ttattccccc acttttatca aattttaggc gcgcaaaaat cgcattatta
     1141 gacgcgttcg aaactatttt atcacaattt agaaaaaata acttttttta ggcgttttgc
     1201 gctatacgaa aaactatttt tagcgtaaaa taacatatta gtaaacatga ataggctggt
     1261 gaaaactttg agcaaacaaa acgtgccatc atatggcggt caagctgtag ttgaaggcgt
     1321 catgtttggc ggcagaaaac agaccgtaac agcaattaga cgtatagatg gttcattaga
     1381 atatttttat ttagaaaaaa atagtccggt ttgggttatg cgtatgaaga aaatcccttt
     1441 tttaagagga attgttgcat taattgaatc tagcgctatc ggttccaaac acctcgcttt
     1501 tgcaacagac cgatatgatg aagatccaaa taatccagta gaagaagaaa aaattgaaaa
     1561 gaaagaatcg aaagtcgcga tgtggcttgg tgttgctgtc atcggtattt tatctttcgt
     1621 ctttgcaaaa tttgtcatga cgctcatccc tgtattttta gcggaattat tccgtcctat
     1681 cgtaccaggt gatacggcgc aagtattttt agagagtctt ttcaaattaa ttcttctatt
     1741 aacctatatt ttcgcggttt ctcagacccc tattattaaa cgagtttttc aatatcacgg
     1801 ttctgagcat aaggtaataa attgttacga agaaaattta cctttaacgg ttgaaaatgt
     1861 acagaaacaa tcgcgacttc attatcgttg tggtagtagt tttattttat ttacagttat
     1921 tgttggtatg tttatttatt tgttagtacc aactgatcct ctttggcttc gtgtggtcga
     1981 ccggatttta cttattcctg tcgtacttgg tgtagctttt gaagtacttc aattaactaa
     2041 taaatgccgt aatatcccag ttcttaaata tttaggtgtc ccgggtttat ggctacaact
     2101 tcttacaaca aaagaaccgt ctgatgatca agttgaggtt gccattgcat cctttaatga
     2161 gcttttacga gtggaaaaag aaggtgcacc agtagatgta gcggaaccgg agaatctgga
     2221 acttttagaa taggagtgga ttaatttgaa gaagtatccc ctcatagtta ttattttact
     2281 tgcgcttgtt ggtattgggc ttttaatggg tggttttaaa tcatttttca ccttaattat
     2341 ttccgtatta atcggggcac ttattttcac ccttctactg cggtttttca caaatagaaa
     2401 aactgacagt aattaccaaa aagcagtaaa acaatcgaaa aatttacatg atccgaagaa
     2461 aaaaacgaag aaaaaacgaa aatcttcttt caaagtgatt gatggtggca aaaaataagt
     2521 tataatagaa aaggatgctt taaaaaaagc agttttcagg atgaaagggg tttacacaat
     2581 tgattagttg gattatagca attatcattc tggttattct tctaggatac gaaatttacc
     2641 agtttgtaat gcgtcgcaaa gcagtaaaag ttttaacaga agaagaattt aaaaaaggtt
     2701 atcgtaaagc acagttaatt gatgttcgcg agccaaatga attcgatgct ggacatattc
     2761 ttggagctag aaatatccca gttacacaaa tgaaaaaccg gacaacagaa attcgtcaag
     2821 atttaccagt ttacttatac tgccaaacag cacaacgtag taaccgtgca gcaattatgc
     2881 tttataaacg cggatacaaa caagtttatc agcttaaagg cggctaccgt aaatggacag
     2941 gaaaaactaa atctaaataa gaaaaagcct tgctgcgaag tttcgcaaca aggcttcttt
     3001 ttatacttct ttttgataac gtaaaatcgg ttttctagca gcgcgtgttt cgtctagtcg
     3061 tttcacatag gtgctatgtg gcgcttcttg gacgatttca ggattttctt ccgcttcttt
     3121 cgcaattttt aacatcgtat caatgaaaga atctagagtt tctttcgatt ctgtttcagt
     3181 cggttcaatc atgattgctt caccaacaat tagcggaaaa taaactgttg gcggatggaa
     3241 attgtgatct agcaatcgtt tcgcaatatc aacagttctt acgccaagtt tcttctgtct
     3301 attaccactt aaaacaaatt cgtgtttaca aacttgatca aatggtaaat cataggcttc
     3361 ttgcagttta cgcatcatat agttggcatt taaaacggca tattctgtca ccaatttcaa
     3421 gccatccgga cccattgtgc gaatatacgt atacgcgcga acattgatgc cgaagttgcc
     3481 ataataaggt ttcactcgtc caatagagtc aggatagtta taatcaaacg tgtatccttc
     3541 ttcttttttc gtaaggactg gtgttggtaa gaatggtatt aattcctttt tcacgccaat
     3601 tgggccagaa ccaggaccgc caccaccgtg aggaccagta aatgttttgt gtaaattcaa
     3661 atgaacaaca tcaaagccca tgtctcctgg tctaactttc gccataatag catttaaatt
     3721 ggcaccatca tagtacaatt tcccgccagc ttcatgaaca atttccgcca tttcaacaat
     3781 atctttttca aaaagaccaa gtgtatttgg gtttgtgagc attagtgcgg ccgtgtcttc
     3841 gcctactact tttttcaaat cagctacatc gacaagtcct ttttcattcg atttcaccgt
     3901 cacaacatcg aagcccgcta ctgctgcaga tgcagggttt gttccatgtg cagagtctgg
     3961 gatgattact tttgtgcgtt ttgtatcccc attcttttca tggaatgcac gaatgagcat
     4021 taatcccgtc cattctccgt gtgctccagc agctggttgt agcgttactt catccattcc
     4081 tgtaatttca actaagcttg tttgcaaatc atacagtagt tctagcgcgc cttggacaga
     4141 gctttctggt tggtttggat ggatattagc gaaaccagga aagcgtgcaa ctttttcatt
     4201 gatttttggg ttatatttca tcgtacaaga gccaagcgga taaaaaccag aatcaacacc
     4261 aaagttatga ttggataaat tggtataatg acgcatgatt tcaagctcgc ttaattcagg
     4321 caaatctgct ggtacagaac gaatatacgc ttgttcaaaa taatcactgg cttttgtttc
     4381 tggaacatcg ctttctggta aactaaagcc aattcttcct ggaatagaac gttcaaacac
     4441 taatggcatc gtttcttcta aattcatttt gcaccctcca agctcgccac aaaggcatca
     4501 atttcctctt ttgtccgcat ttcagtaaca gctacaagca tatggttttc atatttttcc
     4561 tcataaaaac caaggtcata cccaccaata atcccttcat ctaaaagtga ttcattcact
     4621 tctttgattg gtttcgaaag ttttacaaca aattcattga aaaagccatc tgaaaataga
     4681 acttcaaagc ctttttcacg gaatttttgt ttggcataat gagatttatc taagttttgt
     4741 tttgccattt ctacaagacc tgtttttcca agggttgcca ttgcgacaga agaagctaat
     4801 gcattcaatg cttgattgga acaaatatta gacgtcgctt tatcacggcg aatatgttgt
     4861 tcgcgtgctt gtaatgttag tacatacccg cgcttcccgt tctcgtctac ggtttcccca
     4921 actaaacgtc caggaacttt acgcattaat ttatttgtta ctgcaaagaa tccacaatgc
     4981 ggtccaccaa atgattctgg gataccaaat acttgcgaat cacccacaac aatatctgca
     5041 ccaaattctc ctggtggtgt taacaaacct agagacaacg gattgctcga tacaagtaat
     5101 aaagaattat tttcatgcac taatttttca agttcagcca aaggttccac ttgtccatag
     5161 aagtttggat attgtacaac aaaacccgca atatcatctg aaagagcttt ttttagcgcc
     5221 tcaatgtctg tttttccatc tagttctgga ataacttcta cttcaatgtg ttggccagtt
     5281 gcataggttt ttaaaacatt gctactttcc gggtgaacag ctccggaaat gagaattttt
     5341 ttgcgctttg tatgtccact tgctagcatc gctgcttctg caagcgctgt tccaccatca
     5401 tacatagagg aattagccaa gtccattcca gtaagttccg caatcatcgt ttggaattca
     5461 aagattgcct gcaactctcc ttgagaaatt tcaggttgat aaggcgtata tgctgtataa
     5521 aattctgagc gagaaataac atgatcgact acagttggaa tgtaatgact ataaactcca
     5581 gcccctaaaa aagacgcata ttcagtagta ttagcatttt tagaagcaag tttcgataat
     5641 tcgcgtaaaa gtgcaggttc agattttgct ggttttaaat cataatctcg tttaaatcta
     5701 attttttctg gaatatcttg aaataagtca tcaattgact taacccctat tacatcaagc
     5761 atttcctttt catcttgctc tgtcattggt aaataacgat gttttgccat attacttcct
     5821 cctttttact tt
//
LOCUS       DASEAA010000164         5809 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.164, whole genome shotgun sequence.
ACCESSION   DASEAA010000164 DASEAA010000000
VERSION     DASEAA010000164.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5809)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5809)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5809
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.164"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..779
                     /gene="yidC"
                     /locus_tag="U0342_002423"
     CDS             <1..779
                     /gene="yidC"
                     /locus_tag="U0342_002423"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM2423763.1"
                     /translation="LLTGCSMDPSQNTDGFFSTYLIQPFTSFIMFVAKFVGGNYGIAI
                     IITTLLIRALIMPLNLRTAKAQMGMQSKMAVAKPEIDEIQARLKRATSKEEQATIQKE
                     MMAVYSKYNINPMQMGCLPLLIQMPILMAFYYAIRGSSEIASHTFLWFNLGSPDMVLA
                     IIAGLVYLAQYFVSMIGYSPEQKKQMKIIGLMSPIMILFVSFTAPSALALYWAVGGLF
                     LAGQTLLTKKLYMNKHPEIKVMEQEEKEFEQIVEEQKKEK"
     gene            complement(816..2267)
                     /locus_tag="U0342_002424"
     CDS             complement(816..2267)
                     /locus_tag="U0342_002424"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464903.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing protein"
                     /protein_id="HEM2423764.1"
                     /translation="MTTSPFSLKSRSLKFKWTFGASAAIFLTFFLFSYAIYQGIGQML
                     LNEEEPEVKELLLATTSTLTNQDLTDNEEIKYLFNNDKTVNRKLQDQVINLYDKDGHF
                     INKYYFSRSQDITSIDFSQYFVSGTDKFIMNKPTIDGQKMMTAQMPIVADDNTTVIGY
                     AQVVNPLTSYNRMMDRLLVTMILLGAVALFISGMLGYLLAQNFLNPLTRLARTMNDIR
                     KNGFQKRIETKTNSRDEIGELTVVFNDMMTRIETSFEQQKQFVEDASHELRTPVQIME
                     GHLKLLTRWGKDDPAVLDESLNASLTELERMKKLVQEMLDLSRAEQISQTKELQITDV
                     NATVEQVRRNFEVMYENFTFTLKEDDTDLRALIQHNHLEQILIIIMDNAVKYSGDGTE
                     VDMHVYKEQKQIHIDVRDYGEGISQEEIDKIFNRFYRVDKARSREKGGNGLGLAIAKQ
                     LVEGYLGTINAVSEPDKGTTIKITLPYIEPKSK"
     gene            complement(2264..2944)
                     /locus_tag="U0342_002425"
     CDS             complement(2264..2944)
                     /locus_tag="U0342_002425"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464902.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2423765.1"
                     /translation="MNRILIVEDEKNLARFIELELQHENYETAVANDGRAGLELALNE
                     EWDAILLDLMLPHLNGVEVCRRVRQVKQTPIIMITARDSVIDRVSGLDHGADDYIVKP
                     FAIEELLARLRSLLRRVENAEQSAKQTTLQYRNLIVEKENRIVKRDEEIIDLTKREYE
                     LLLTLMENVNIVLTREVLLNKVWGYETEVETNVVDVYVRYLRNKIDHPDEESYIQTVR
                     GTGYVMRT"
     gene            complement(3135..4553)
                     /gene="gndA"
                     /locus_tag="U0342_002426"
     CDS             complement(3135..4553)
                     /gene="gndA"
                     /locus_tag="U0342_002426"
                     /EC_number="1.1.1.44"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464901.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent phosphogluconate dehydrogenase"
                     /protein_id="HEM2423766.1"
                     /translation="MAKQEIGVIGMGVMGRNLALNIESRGHTVSIFNRSTEKTKAVME
                     ENADKKLVPTYSLEEFVESLEVPRRILIMVKAGDATDMMIEAVKPFLNEGDILIDGGN
                     AFFKDTIRRNKELSEEGFNFIGTGVSGGEEGALKGPSIMPGGQRKAYDLVAPILREIA
                     AVADGEPCVTYIGPDGAGHYVKMVHNGIEYGDMQLIAEAYTILKEIGGLSHDELADVF
                     EEWNNGELDSYLIEITKNILKVKDEETGKPIVDVILDKAGQKGTGKWTSQSALDLGVP
                     LSLITESVFARYISALKDERVYASTVLSGPSNYRFEGDKKAFVESVRRALYFSKIASY
                     AQGFAQMRAASEENDWDLQYGEIAKIFRAGCIIRARFLQKITDAYNKDKNLKNLLLDP
                     YFKDIAHNYQGDLRTVVAEAVKAGIPVPTFTAAISYYDSYRSEVLSANLIQAQRDYFG
                     AHTYERVDKPGVFHTEWPQVED"
     gene            complement(4698..5795)
                     /locus_tag="U0342_002427"
     CDS             complement(4698..5795)
                     /locus_tag="U0342_002427"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464900.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M20/M25/M40 family metallo-hydrolase"
                     /protein_id="HEM2423767.1"
                     /translation="MMISNVKKYFTELIQTPSVSGKETAILTYIKKHLAKLNIEYSLD
                     EDYGLIARIPATKEKFPTIFFCSHVDTHPNAATPVFQMEQDVFTVEEGTSLGADDKAA
                     VAAMLAAIDYFCAERTAHGEIEFIFTTKEELGMIGMRLFPEEKITAAYGYCLDAPGEV
                     GNYQLQANTLVALEFTIASSEAAQMSPISIARMALHATRPGRIDRENKWEIQSFSGGI
                     NDENQQDAQLEVLFTSAASFRKALLHIQTIRERFAQTCEKYGALLTHDTKLIYEGYRI
                     RSKHPLMNIFQKAAKKQSLETREIFLEGGTDANVLNEKGIPTMLLSAGYENAHTEEET
                     VSVEQLEKLTQLVIDLAESAKNEKILLRKLN"
BASE COUNT         1669 a         1194 c          982 g         1964 t
ORIGIN      
        1 tattacttac aggttgtagt atggaccctt cacaaaatac agatggtttt ttcagcactt
       61 atttaatcca accatttact agttttatta tgttcgttgc aaagtttgtt gggggtaatt
      121 acggaattgc gattattatt acaacgttac ttatccgtgc actaattatg ccactaaact
      181 tgcgtactgc taaagctcaa atgggaatgc aatccaaaat ggccgttgcc aaaccagaaa
      241 ttgatgaaat tcaagctcga ctaaaacgtg caacatcgaa agaagaacaa gccactattc
      301 aaaaagaaat gatggccgtc tattccaagt ataatatcaa tccaatgcaa atgggttgtt
      361 taccattact tattcaaatg ccaatattga tggctttcta ttatgctatt cgcggatctt
      421 ccgaaattgc tagccacaca ttcttatggt ttaacttagg ttcaccggat atggtgctag
      481 caattatcgc cgggcttgtc tacttagcac aatactttgt ttccatgatt ggttattcac
      541 cagaacaaaa gaaacaaatg aaaattatcg gtttaatgtc tcctattatg attttattcg
      601 tttccttcac agctccctct gcactagcgt tatactgggc tgtcggcgga ctcttcttag
      661 caggtcaaac attactaacg aaaaaacttt acatgaataa acacccagaa attaaagtaa
      721 tggagcaaga agaaaaagaa ttcgagcaaa tcgtggaaga acaaaagaaa gaaaaataaa
      781 aaaaaccgca acctcgtcat aaggttgcgg tttttttatt tggattttgg ttcaatgtaa
      841 ggaagtgtaa tttttatcgt tgtaccttta tctggctcac taaccgcatt aatcgttcct
      901 aaatatcctt cgactaattg tttagcaatc gcaagtccga ggccattacc acctttttcg
      961 cggcttctgg ctttatctac acggtagaag cgattgaata ttttatcaat ctcttcttgt
     1021 gagatgcctt ccccgtaatc gcgcacatca atatggattt gcttttgttc tttatagaca
     1081 tgcatatcca cttcggtgcc gtcacctgaa tacttcacgg cattatccat aataataatt
     1141 aaaatctgct ctaaatgatt atgttgaata agtgctcgta aatcagtatc atcttctttt
     1201 aaagtaaacg tgaaattttc atacatcact tcaaaattac gtcttacttg ttctacagtt
     1261 gcatttacat cggtaatttg taattctttt gtttgtgaaa tttgttccgc tcttgataaa
     1321 tcaagcattt cttgtactaa ttttttcata cgttctaatt ccgttaacga agcgtttaat
     1381 gattcatcaa gtacagccgg atcatctttt ccccaacgag tgagtaattt taaatggcct
     1441 tccataattt gcactggggt acgtaattca tgagaagcat cctctacgaa ttgcttttgc
     1501 tgttcaaaac tagtttcaat tcgtgtcatc atatcattaa aaacaacggt caattcgcca
     1561 atttcatcgc gggaattggt tttcgtttcg attcgttttt ggaaaccatt ttttcgaata
     1621 tcattcattg ttcgagctag acgagtcagt gggtttaaga aattttgtgc tagcaagtag
     1681 ccgagcattc cactaataaa gagcgccact gccccaagta aaatcatcgt aacgagaagc
     1741 cggtccatca tccgattata ggaagtgagc ggatttacca cctgcgcgta accaatcacg
     1801 gtcgtattgt cgtccgctac aatgggcatt tgcgccgtca tcatcttctg tccgtcaatc
     1861 gttggtttat tcataataaa cttgtccgta ccactaacaa aatactgcga aaaatcaatg
     1921 ctagtaatat cttgacttct tgaaaaataa tacttattaa taaaatggcc gtctttatca
     1981 tacagattaa ttacttgatc ttgtaatttt cgattcaccg ttttatcgtt attaaataaa
     2041 tacttaattt cctcattatc ggtcaaatct tgattcgtta aagtgctcgt tgttgctaga
     2101 agcagttctt ttacttctgg ttcttcttca tttaacaaca tttgcccaat tccttggtaa
     2161 atggcatagg aaaataagaa aaaagttaga aaaatagctg cactagctcc aaaagtccat
     2221 ttgaatttca aagaacgact ttttaaggaa aatgggctag tcgtcatgta cgcatcacat
     2281 accctgtccc gcgaactgtt tggatataac tttcttcgtc aggatgatca attttatttc
     2341 gtaagtaacg aacgtacaca tccactacat ttgtttctac ttctgtttca taaccccata
     2401 ctttattgag taacacttcc cgcgtaagaa cgatattaac attttccatt aacgtaagta
     2461 aaagttcata ctctcgtttt gttaagtcaa tgatttcttc gtcgcgtttg acaatgcgat
     2521 tttccttttc aacaattaga ttacgatact gtagcgttgt ttgtttagca gattgttctg
     2581 cattttccac ccgacgcaat agcgagcgaa ggcgcgcaag taattcttca atagcgaagg
     2641 gtttgacgat gtaatcatct gctccgtgat ccagtccgga tacacgatcg ataactgagt
     2701 cacgtgcggt tatcataata atgggtgttt gtttcacttg gcgtacacga cgacaaactt
     2761 ctacaccgtt taaatgcggc aacattagat cgagtaaaat agcatcccat tcttcattaa
     2821 gtgcgagttc tagtccagca cgtccatcat tagcaaccgc tgtttcataa ttttcatgtt
     2881 gtaattcgag ttcgataaag cgtgctaagt ttttttcatc ttctacgatt aatattctat
     2941 tcatttggcc taaccctctc tttcggtcat tacactatat tcctattact attgtaacga
     3001 actttagctc aaaaacaact aataacagcg cataaataga tattttcact attttttagc
     3061 actttaccat gatttactaa ttcaaatctc ataaaaaagg cacccactcg ttaaagtgga
     3121 tgccttatct tccatcaatc ttctacttgt ggccattctg tatggaatac gccaggtttg
     3181 tcgactcttt catacgtatg agcgccaaag tagtcgcgtt gtgcttggat tagatttgca
     3241 gataatactt ctgaacgata gctatcgtag tagctaattg ctgcagtgaa tgttggaact
     3301 ggaattccag cttttactgc ttctgcaaca actgtacgaa ggtcgccttg gtagttatgt
     3361 gcaatatctt tgaaatatgg atctaataat aagtttttaa gatttttatc tttattataa
     3421 gcatcagtaa ttttttgtaa gaaacgagca cggataatac aaccagcgcg gaaaattttc
     3481 gcaatttcgc cgtattgtaa gtcccaatcg ttttcttcac tagctgctct catttgtgca
     3541 aaaccttgtg cataagatgc gattttgctg aaataaagcg cacgacgaac agattcaaca
     3601 aatgcttttt tgtcgccttc aaaacgataa ttagatgggc cagataaaac agtacttgca
     3661 taaacgcgtt catctttaag tgcagagatg taacgagcaa atacagattc tgtaattaag
     3721 gaaagtggaa cacctaagtc gagtgcgctt tggctagtcc atttaccagt tcctttttga
     3781 cctgctttat caaggataac atcgacaata ggtttgccag tttcttcgtc ttttactttt
     3841 aggatgtttt tagtgatctc gattaaatag ctatcaagtt ccccgttgtt ccattcttca
     3901 aatacgtcag caagttcatc atggcttaat ccaccgattt ctttcaaaat agtgtaagct
     3961 tctgcgatta attgcatatc gccgtattcg ataccattat gcaccatttt aacgtaatgt
     4021 ccggcaccgt ctgggccaat ataagtcaca caaggttctc cgtctgctac tgcagcaatt
     4081 tcacgtaaaa taggtgctac aaggtcatat gccttgcgtt gaccacctgg catgatagaa
     4141 ggacctttta gtgcaccttc ttctccgcct gatacaccag ttccgatgaa gttaaatcct
     4201 tcttcactta gttctttatt acgacgaatc gtatctttga agaaagcatt accgccatca
     4261 attaaaatat cgccttcgtt taagaaaggt ttaactgctt caatcatcat atctgtagca
     4321 tcgccagctt ttaccataat aaggatacgg cgaggcactt caagagattc gacaaattcc
     4381 tctaaactat aagttggtac taattttttg tccgcatttt cttccataac tgctttcgtt
     4441 ttttcagtcg agcggttaaa gatagatact gtatgaccgc ggctttcaat gtttagagcc
     4501 aagttacgac ccataacgcc cattcctata acgccaattt cttgttttgc cattttgcac
     4561 ttcttccttt ccggtttatt aaggcagaaa aatctgtctt acttcaacat gacacataaa
     4621 agtatcaaca tcatttacta tatcaaagaa ttgcttcttg gacaatgaat caatccgaat
     4681 tatttgactt tttttcacta atttagtttt ctgagaagaa ttttctcgtt ttttgcggat
     4741 tctgctaagt caatgacgag ttgagtaagt ttttctaact gctcaacaga tactgtttct
     4801 tcttctgtgt gcgcattttc gtatccagct gataagagca tggtcggaat acctttttca
     4861 ttcaacacat ttgcatctgt tccgccttct aaaaatattt ctcttgtttc caaagattgt
     4921 ttttttgcgg ctttttgaaa aatattcatt agtggatgct tagagcgaat tcggtaccct
     4981 tcataaatta attttgtatc atgcgtcaaa agagcaccat atttctcgca agtttgcgca
     5041 aatcgttctc taatggtctg gatatgcaaa agcgccttac gaaaacttgc tgctgatgta
     5101 aaaagaactt ctaattgggc atcttgttga ttttcatcat ttattccacc agaaaacgac
     5161 tgaatttccc atttgttttc tcggtcaatt ctgcctggcc gcgtggcatg taacgccatt
     5221 ctcgctatag aaatcggtga catttgggca gcttcagaac ttgcaatagt aaattctaat
     5281 gcgactaacg tatttgcttg taattgataa tttccgactt cacctggtgc atctaaacag
     5341 tatccataag ctgccgtaat tttttcttcc ggaaataaac gcattccaat catgccgagt
     5401 tcttctttcg tcgtgaaaat aaattcaatc tccccatgag ctgttcgttc tgcacaaaaa
     5461 taatcaatag ccgctaacat agctgctact gctgctttat catccgcacc taaagaagtg
     5521 ccttcctcta ccgtaaatac atcttgctcc atttggaaaa ctggcgttgc cgcatttgga
     5581 tgcgtatcca catgactaca gaaaaaaatc gttggaaatt tctctttagt agcaggaatt
     5641 cgagcaatta aaccataatc ttcatccaaa ctatattcaa tgtttaattt tgctagatgt
     5701 ttttttatat acgtcaaaat agctgtttct ttccctgaga cagatggagt ttggattaat
     5761 tcggtaaaat atttttttac attggatatc atcatttttc cacctacat
//
LOCUS       DASEAA010000165         5806 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.165, whole genome shotgun sequence.
ACCESSION   DASEAA010000165 DASEAA010000000
VERSION     DASEAA010000165.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5806)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5806)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5806
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.165"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            255..1778
                     /gene="gadC"
                     /locus_tag="U0342_002428"
     CDS             255..1778
                     /gene="gadC"
                     /locus_tag="U0342_002428"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465885.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate:gamma-aminobutyrate antiporter"
                     /protein_id="HEM2423768.1"
                     /translation="MSKQAKSLTLFGFFAITASMVMTVYEYPTFATSGFHLVFFLLLG
                     GFLWFLPVALCAAEMATVDGWQEGGIFSWVGNTLGERFGFAAIFFQWFQITVGFVTMI
                     YFILGALSYVFDFPALESNPFIKFIGVLIIFWGLTFSQLGGTKNTAKIAKFGFIIGIL
                     IPAIILFILGIAYVAGGNPLHVAFSKEAFIPDFSKASTLVIFVSFILAYMGVEASASH
                     VNEMTNPKRDYPLAMIMLVILAIALNTIGGLTISAVLPLKDLSLSSGVVQTFQALILH
                     FGSGLGWAVKLIAIMIALGVMGEVSAWVVGPSRGMYTAAEQGLLPEKMKKVNKHGVPV
                     PLIMVQGVVVTIWAAILTFGGGGNNLSFLTAISLTVVIYLVGYLLFFIGYLVLIFKKS
                     SLKRTYQIPGGKIVKVIVALIGLVTSVFALCISFVPPASIAAKSDTTYMVILSISFIV
                     TVLIPFIIYAVHDKKDISPKDITHLESSDINKFTHPRARGEHIINPDEKHIMNQDKL"
     gene            1791..3185
                     /locus_tag="U0342_002429"
     CDS             1791..3185
                     /locus_tag="U0342_002429"
                     /EC_number="4.1.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465886.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate decarboxylase"
                     /protein_id="HEM2423769.1"
                     /translation="MLYSKENKESYLEPVFGSSAEDRDIPKYTLGKEPLEPRIAYRLV
                     KDELLDEGSARQNLATFCQTYMEDEATKLMSETLEKNAIDKSEYPRTAELENRCVNII
                     ADLWHAPKNQKFMGTSTIGSSEACMLGGMAMKFAWRKRAEKLGLDIYAQKPNLVISSG
                     YQVCWEKFCVYWDIDMRVVPMDKDHMQLNTDQVLDYVDEYTIGVVGILGITYTGRYDD
                     IYALNEKLEEYNSKTDYKVYIHVDAASGGFFTPFVEPDIIWDFRLKNVISINTSGHKY
                     GLVYPGIGWVLWKDESYLPEELIFKVSYLGGEMPTMQINFSRSASHIIGQYYNFLRYG
                     FEGYRTIHQKTSDVAQYLAHAVEQTGYFDIYNDGSHLPIVCYKLKDDANVKWTLYDLA
                     DRLQMRGWQVPAYPLPKNLENIIIQRYVCRADLGFNMAEEFIQDFQASIQELNNAHIL
                     FHDTQQSGVHGFTH"
     gene            complement(3194..4708)
                     /locus_tag="U0342_002430"
     CDS             complement(3194..4708)
                     /locus_tag="U0342_002430"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725133.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2423770.1"
                     /translation="MLTNYIEKDIKRKCLICDFLLKNKHTNLDEIAEYMETSRVTVRS
                     DIHALNEELDGLIVIQMKECVDNWVYQCRLQNGATERKVLYKLYDNSMFLKCVAFFVT
                     NVEERKFTDFMDTYFISHSHAYRLKHKVEAFLREIDLTLDNNRITGKEYRVRYLIALL
                     QAEYGVLIYPLLDEEKQMIDDFMATLNLRINIDTLAHNAEGHAYFRSLISMAFKRDIP
                     TSAIILDEQCQKYIESSSFLAMVRKSSKETLEKELGQEFSYNDYLYLMLIYYSTNFSI
                     IDASMKKVELEQFNELIMKNADLQVLIDLFEEYFGPEVVNHSLFRAALCYFLKKTLFN
                     LQGLIPSNERLLDKKYEPLYMVVKNVLERWNEASEYRVLLIDSHINYLTIHLYPLIYK
                     WNNPVQICIFSFNLINFESCKFQVEQELGRKVTVHETMFNSVEELNQVLTESSEPTIV
                     LCHPNCEMELKEAVDGMIIPISLAFFDRDLVDVERAIQSLRIKEHEKRLAYLRG"
     gene            complement(5057..5140)
                     /locus_tag="U0342_002431"
     tRNA            complement(5057..5140)
                     /locus_tag="U0342_002431"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5104..5106),aa:Leu,seq:caa)
     gene            complement(5186..5259)
                     /locus_tag="U0342_002432"
     tRNA            complement(5186..5259)
                     /locus_tag="U0342_002432"
                     /product="tRNA-Cys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5225..5227),aa:Cys,seq:gca)
     gene            complement(5279..5350)
                     /locus_tag="U0342_002433"
     tRNA            complement(5279..5350)
                     /locus_tag="U0342_002433"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5316..5318),aa:Gly,seq:gcc)
     gene            complement(5356..5427)
                     /locus_tag="U0342_002434"
     tRNA            complement(5356..5427)
                     /locus_tag="U0342_002434"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5393..5395),aa:Gln,seq:ttg)
     gene            complement(5457..5529)
                     /locus_tag="U0342_002435"
     tRNA            complement(5457..5529)
                     /locus_tag="U0342_002435"
                     /product="tRNA-His"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5494..5496),aa:His,seq:gtg)
     gene            complement(5545..5618)
                     /locus_tag="U0342_002436"
     tRNA            complement(5545..5618)
                     /locus_tag="U0342_002436"
                     /product="tRNA-Trp"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5584..5586),aa:Trp,seq:cca)
     gene            complement(5626..5709)
                     /locus_tag="U0342_002437"
     tRNA            complement(5626..5709)
                     /locus_tag="U0342_002437"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5673..5675),aa:Tyr,seq:gta)
     gene            complement(5729..5801)
                     /locus_tag="U0342_002438"
     tRNA            complement(5729..5801)
                     /locus_tag="U0342_002438"
                     /product="tRNA-Phe"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(5766..5768),aa:Phe,seq:gaa)
BASE COUNT         1805 a         1365 c          980 g         1656 t
ORIGIN      
        1 gccgtgaata aaacaacctc aagtactgtc tcaaaaattt tccttagcca agaaaaaaac
       61 tggaataatt ttcgaaaaca aacgtgctaa tcttatacat gttccaacaa acaatgactt
      121 aggaggtgct tttctcgtgt taactgatga tgttccaaaa aaatcacatt taccattaat
      181 taagcatcat tctaattact tatagcttcg tttagttgta ttttcgcaaa caaaaaattg
      241 ggaggtacta cacaatgtct aaacaagcaa agtctttaac cttattcgga tttttcgcca
      301 ttacggcttc gatggttatg acagtttatg aatatccaac atttgccact tccggctttc
      361 atctcgtatt tttcttgcta cttggcggat ttttatggtt cttacctgtc gctttatgtg
      421 cagcagaaat ggcgacagtt gatggctggc aagaaggcgg tattttttct tgggtgggaa
      481 atacactcgg ggaacgtttt ggttttgccg caatcttctt tcagtggttt caaataacgg
      541 tcggattcgt gacaatgatt tactttattc ttggcgcgct atcgtatgta tttgattttc
      601 ccgcgctcga atcgaaccct tttattaaat ttatcggtgt tttaatcatt ttctggggac
      661 ttactttttc tcaactaggt ggtacgaaaa acacggctaa aatcgcaaaa tttggtttta
      721 ttatcggtat tctcatccca gcaatcattt tatttatcct aggtattgct tatgttgctg
      781 gcggaaatcc ccttcatgtc gctttttcca aagaggcgtt tatcccggat ttctcaaaag
      841 cttcaacatt agtcatcttc gtgtcattta tactcgctta catgggtgtt gaagcttccg
      901 cgagccacgt aaatgaaatg accaatccaa aacgcgatta tccactagcg atgattatgc
      961 tcgttatttt agcgatcgca ctgaatacaa tcggcggcct aaccatttcc gctgtgttac
     1021 ctttaaaaga tttatccctt agctccggtg tcgtccaaac attccaagcg ctaattctgc
     1081 actttggttc cggcttagga tgggcagtaa aactgattgc catcatgatt gcacttggcg
     1141 tcatgggtga agtcagtgcc tgggtagtcg gcccctcacg cggaatgtat actgcagcag
     1201 aacaaggctt acttccagaa aaaatgaaaa aagtaaataa acacggtgtc cctgttccac
     1261 ttattatggt tcaaggcgtc gtcgttacca tttgggcagc tattctcaca ttcggcggcg
     1321 gcggaaataa tttatcattc ctaactgcca tttccttaac cgtagtcatt tatttagtcg
     1381 gctatttact ctttttcatc ggctacttag tacttatttt caaaaaatca agcttaaaac
     1441 gcacctatca aatccctggt ggcaaaattg ttaaagtgat tgtagcgcta atcggcttag
     1501 taacatccgt tttcgcttta tgtatctctt ttgttccacc agcatccatc gccgcaaaaa
     1561 gcgacacgac atacatggtt atcttatcaa tcagctttat cgtcaccgta ctaattccat
     1621 ttatcatcta cgctgtgcac gataaaaaag acatctcacc gaaagatatt acacatttag
     1681 aatcaagcga catcaataaa ttcacccacc caagagctcg tggcgaacac attattaacc
     1741 ccgacgaaaa acatattatg aatcaagaca aattatagga ggaaaaaatc atgttatata
     1801 gtaaagaaaa taaagaaagt tatttagaac cagttttcgg atcaagtgca gaggatcgtg
     1861 atattcctaa atacaccctc ggaaaagaac cactcgaacc tcggattgcc tatcgtttag
     1921 taaaagacga acttttagat gaaggttctg cccgtcaaaa cttagctact ttttgccaaa
     1981 catatatgga agacgaagca accaaattaa tgtccgaaac actagaaaaa aatgcaatcg
     2041 ataaatctga gtacccaaga acagctgaac tagaaaatcg ttgcgtcaat attatcgctg
     2101 acttatggca tgcacctaag aaccaaaaat tcatgggaac ttccacaatc ggctctagtg
     2161 aagcgtgtat gctgggcgga atggcaatga aatttgcttg gagaaaacgt gcggaaaaac
     2221 ttggcttaga tatttatgcg caaaaaccaa acctcgttat ctcctctggc taccaagtgt
     2281 gctgggaaaa attctgtgtc tactgggata tcgatatgcg cgttgttcca atggataaag
     2341 accacatgca actgaatacc gaccaagtcc ttgattacgt cgacgaatat acaatcggcg
     2401 ttgtcggcat cctcggcatc acttacacag gccgctacga tgacatctac gcacttaacg
     2461 aaaaattaga agaatacaat agcaaaacag attataaagt ctacattcac gttgacgcag
     2521 ctagtggtgg cttcttcaca ccatttgtcg aacccgatat catctgggac ttccgcttga
     2581 aaaacgttat ctccattaat acttctggtc acaaatacgg cctcgtttat cctggtatcg
     2641 gttgggtcct ttggaaagat gaaagctacc taccagaaga acttattttt aaagtcagct
     2701 accttggcgg agaaatgcca accatgcaaa tcaatttctc ccgcagtgcg agccacatca
     2761 tcggtcaata ctacaatttc ttacgctacg gcttcgaagg ctaccgcacc attcatcaaa
     2821 aaacaagcga tgtagcacaa taccttgccc atgcagtcga acaaaccggc tactttgaca
     2881 tttataacga cggctcccat ttaccaatcg tctgctataa attaaaagac gacgctaacg
     2941 taaaatggac attatatgat ttagcggacc gcctccaaat gcgcggctgg caagttcccg
     3001 catacccact accaaaaaac ttagaaaaca tcatcatcca acgttacgtc tgccgcgctg
     3061 acctcggttt caacatggca gaagaattca tccaagattt ccaagcctct attcaagaac
     3121 taaacaacgc tcacatcctc ttccatgata cccaacaatc cggcgtccac ggcttcacac
     3181 attaataaaa aggctagcct ctcaaatagg ctagcctttt ttcatgttct tttattctaa
     3241 gcgactgaat cgccctttct acatctacaa gatctctgtc aaaaaaagcc aaagaaatcg
     3301 gaataatcat cccatctacc gcttccttca attccatttc acagttcgga tggcaaagca
     3361 caatcgttgg ctcacttgac tccgttaaaa cctggttcaa ctcctccact gaattaaaca
     3421 tcgtctcatg caccgtcacc ttccgcccca gctcctgctc cacctgaaac ttacacgact
     3481 cgaaattaat taaattaaag gaaaaaatac aaatttgcac cggattgttc catttataaa
     3541 tcagtggata caaatgaatc gtcaaataat taatgtgcga atcaattaat aatactcgat
     3601 attcactagc ctcattccag cgctccaaaa catttttcac aaccatataa agtggctcat
     3661 actttttatc cagtaatcgc tcattactcg gaataagtcc ctgcaaatta aacaacgtct
     3721 tcttcaaaaa gtaacaaagt gccgcccgaa aaagcgaatg attaacaacc tccggaccaa
     3781 aatattcctc aaataaatca atcaaaactt gtaaatccgc atttttcatt atcaactcat
     3841 taaactgctc caactccacc tttttcatgg aagcatcaat gatactaaaa ttagtcgaat
     3901 aataaatcag cattaaatac aagtaatcat tatatgaaaa ttcctgacca agctcttttt
     3961 caagtgtttc cttactactt ttccgaacca tagcaagaaa gcttgaagac tcaatatatt
     4021 tttgacactg ttcatccaat ataattgcac tagtcggaat atccctctta aacgccatcg
     4081 aaatcagcga ccgaaaatac gcatgacctt ccgcattatg cgccaacgta tcaatattaa
     4141 tccgcaaatt caacgtcgcc ataaagtcat caatcatttg cttctcctca tccaaaagtg
     4201 gataaataag cacaccatat tctgcttgaa gaagcgcaat caaataccga acccggtact
     4261 ccttcccagt aattcgatta ttatcaagtg tcaaatcaat ttctcgaaga aacgcctcta
     4321 ccttgtgctt caaccgatac gcatgcgaat gagaaataaa atacgtatcc ataaaatctg
     4381 tgaatttgcg ctcctccaca ttcgtaacaa aaaacgccac acatttcaaa aacatcgagt
     4441 tatcatataa cttatacaaa actttccgtt ccgtcgcccc attttgcaac cgacattggt
     4501 atacccaatt atccacacat tctttcatct gaataacaat caagccatcc aattcctcat
     4561 tcaacgcatg aatatccgac cttaccgtca cccgagaagt ctccatatat tccgcaattt
     4621 catctaaatt cgtatgttta ttctttagta gaaaatcaca aatcaaacat tttctcttaa
     4681 tatccttttc gatataattt gtaagcataa ctatcctctc cgtgaaagat taatacacaa
     4741 caattttcgc cttcttaaca tgttaattta atcacataaa attgcaactt ctcactatat
     4801 aaattttttt aagtagagtt atatcattaa ttttttgtaa gtggtataac atgtcattaa
     4861 actccgtcaa aaggtccttt tgatcaagaa aagtaatatt tccatttttt gtaatttatc
     4921 cttgaaagca tgtaaatata cgcctttcct gctaaattat tttttctcgt ctttatttat
     4981 aacacaactt tcaagcagaa tccatctttg aaataaaaaa taccaacgaa tcgttagaaa
     5041 cgttggtatc atagtatacc ggcggccggg gtcgaaccgg cacgcccttg cgggcacagg
     5101 attttgagtc cagcgcgtct gccaattccg ccacgccggc gtaacaatat aataaattat
     5161 aactttaaaa cattaattat gcaaatggag gcgccaaccg gatttgaacc ggtgataaag
     5221 gttttgcaga cctctgcctt accacttggc tatggcgccg cacaatgttc aatttaaaag
     5281 cggaagacgg ggttcgaacc cgcgaccccc accttggcaa ggtgatgttc taccgctgaa
     5341 ctacttccgc attaactggg ccagctggat tcgaaccaac gcatgacgga gtcaaagtcc
     5401 gttgccttac cgcttggcta tggcccaaca attatattag acttaaaaac aaaaagggcg
     5461 gatgatggga atcgaaccca cgaatgcctg aaccacaatc aggtgcgtta accacttcgc
     5521 cacatccgcc attattttaa tatatggcag gggcagtagg aatcgaaccc acactggagg
     5581 ttttggagac ctcagttcta cctttaaact atgcccctat aaaaatggtg gaggggagtg
     5641 gattcgaacc accgaacccg aaggagcgga tttacagtcc gccgcgttta gccacttcgc
     5701 tacccctcca tattaaaaaa gaaaaaagtg gcttgggaca gaatcgaact gccgacacct
     5761 tgagcttcaa tcaagtgctc taccaactga gctaccaagc cataat
//
LOCUS       DASEAA010000166         5773 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.166, whole genome shotgun sequence.
ACCESSION   DASEAA010000166 DASEAA010000000
VERSION     DASEAA010000166.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5773
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.166"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..389)
                     /locus_tag="U0342_002439"
     CDS             complement(<1..389)
                     /locus_tag="U0342_002439"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464782.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423771.1"
                     /translation="MDNCLAQLQMYDYLLKKYRNKEVFPDTRMIVEIDGKLWTGDFLQ
                     LDDCHIIEIDWEDTRFTRIERTKDAINDEFNEKVTNSNVNVSENRIDSKIGSLKNIEI
                     LYQEIGNFVRQVESSTTTLKPLLYNAY"
     gene            578..1492
                     /locus_tag="U0342_002440"
     CDS             578..1492
                     /locus_tag="U0342_002440"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958877.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2423772.1"
                     /translation="MYKQMKLKATDGLDLHLHIWDEVKNPVGVVQIVHGMAEHGARYG
                     LFAERLNQAGYIVVADDHRGFGKSAIDEASLGHLDGETGFQNMVEDEAVVRTYLKESY
                     PELPYFIFAHSMGSFIIRTFMAKHQVDGVILSGSGLQPIALLKMGQMITKQRVKKDDR
                     KRSGFLNKLAFWGYNKPFNENHRFSWLSRDVAIYEAYEQDPFCGPVVGTSGFFHNLFE
                     AVKVSQQKETLESVPKDLPVLLLSGSDDPVGHFGKDTPKIALSLEKAGVEDVTYKIYE
                     DARHELVNEICKETVFQDVIDWLNEKRR"
     gene            complement(1518..2765)
                     /locus_tag="U0342_002441"
     CDS             complement(1518..2765)
                     /locus_tag="U0342_002441"
                     /EC_number="1.2.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464784.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate-5-semialdehyde dehydrogenase"
                     /protein_id="HEM2423773.1"
                     /translation="MTELIKKGSGAKEAAQFLAQATTKHKNAALLNLSNDLLIHTATL
                     LQENEKDILRAKQKGTPETMIDRLRLTEERIKEISEAVKQVVALKDPIGEVTNMWKNE
                     AELTIGKTRVPLGVIGIIYESRPNVTVDASVLCFKTGNAVILRGGSDAIDSNKALMSV
                     IQDSLEASGFPRSSVQLIEDTSRETARDMMRLNRFLDVLIPRGGARLIQTVLENATVP
                     VIETGTGNCHIYVDKAAEKQMAIDILVNAKCSRPSVCNAAETLLIHRDVAEDYLPAME
                     TALKEYDVELRADERAKEILQEAKAATESDWEDEFLDFILAIKVVDSAEEAIDHINKY
                     GTKHSEAIISNDYATGQAFHQKVDAAAVYINASTRFTDGFAMGFGAEIGISTQKLHAR
                     GPMGLTELTSTKYIIFGDGQIRN"
     gene            complement(2749..3579)
                     /gene="proB"
                     /locus_tag="U0342_002442"
     CDS             complement(2749..3579)
                     /gene="proB"
                     /locus_tag="U0342_002442"
                     /EC_number="2.7.2.11"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate 5-kinase"
                     /protein_id="HEM2423774.1"
                     /translation="MRESLKNSKRLVIKVGTSTLMYGNGHINLRTIEKLAMVLSDLRN
                     EGKEVILVSSGAIGVGCHKLQLSVRPTSIPDLQAVASVGQSELMHIYSKFFGEYGQVV
                     GQVLLTRDVTDFPISRENVMNTLDSLLSRGIIPIVNENDTVAVEELEHVTKYGDNDLL
                     SAIVAKLVQADLLIMLSDIDGFYGSNPATDPEAVMFSEINQITPEIEALAGGRGSKFG
                     TGGMLTKLSAASYCMDSNQKMILTNGKNPTVIFNIMQGEQIGTLFASKKEELSHDRTH
                     "
     gene            complement(3726..4865)
                     /locus_tag="U0342_002443"
     CDS             complement(3726..4865)
                     /locus_tag="U0342_002443"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PrsW family intramembrane metalloprotease"
                     /protein_id="HEM2423775.1"
                     /translation="MSEWYFKKNEQKMGPFTNVEMIALYRKKEINNLTLVQKSPHPEW
                     IAFKQTELYQHIGNHGNSELKISNLFSAVFKKHSKEEGEKVFIAGTKYTTPAISDIPH
                     SWPHPWVFSRVFLVLIVTYFLLLACTYLFDNSNTIPGLMVIGSFAVPFSVLLFFFETN
                     APRNISVFDVVRMFFIGGVAALVATLVIYSIIPVGKLNYFNALLVGFIEETGKMIIVA
                     LFIRSLNSKYILNGLLIGAAVGAGFAAFESLGYAFNYSVDAAFLFKDIHIAGETMLNV
                     IFSRGWQSIGGHVAWAAITGAALVIAKGDQKLGMHHIFTGTFWKWFIIPIALHFIWDC
                     PFNPLPAIAFKQIVLIIVVWFVILRLISKGLKQVSVISAASKAAK"
     gene            complement(4945..5340)
                     /locus_tag="U0342_002444"
     CDS             complement(4945..5340)
                     /locus_tag="U0342_002444"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2423776.1"
                     /translation="MPNLSNRLTLLREKQGWSKAETARRLGLKAPSTYGNWEYGIREP
                     DLEMVTQIATLYDVSVDYLLGQQSIPTYAPSELQNEKDIGKRITKISEDLKYEDDLNL
                     DGQPLNESAAAFLADSINFLYEQAKKIND"
     gene            5491..5610
                     /locus_tag="U0342_002445"
                     /pseudo
     CDS             5491..5610
                     /locus_tag="U0342_002445"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464788.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
BASE COUNT         1859 a         1061 c         1031 g         1822 t
ORIGIN      
        1 caataagcgt tatagagtaa cggttttaat gttgtagtag aactttctac ttggcgaaca
       61 aaattgccaa tttcttgata caatatttca atgtttttta aactaccaat tttggaatcg
      121 atacgatttt cacttacgtt tacattagag ttcgtaactt tttcgttaaa ttcatcattg
      181 atagcatctt tcgtacgttc gatacgcgtg aaccgagtat cttcccaatc aatttcgatg
      241 atatggcaat cgtccagttg aagaaaatca ccagtccaaa gtttgccgtc gatctcgaca
      301 atcattctcg tatcagggaa aacctctttg ttacggtatt ttttgagtaa ataatcatac
      361 atttgtaatt gcgctaaaca gttatccatg tgtgtcatct ccttatggga ctattataac
      421 atattgtgat tatgtgaaca atcttcaata tagaaatgaa tagttggaac tgtaactttt
      481 taactagtta tacaaaagtc ctaaaaaaag tctgtgaaat agtgaaaata actatcaggt
      541 ggtatactaa taataagatg aaatgggagg gagacagatg tacaaacaaa tgaaattaaa
      601 agctacagat ggactcgatt tgcatttaca tatttgggat gaagtgaaaa atccagttgg
      661 tgtagttcaa attgttcatg ggatggcaga acacggggca agatacggct tgtttgcgga
      721 acgtttgaat caggctggat atattgtcgt agccgatgat caccgtggtt ttgggaaatc
      781 agccatagat gaggcatctt taggtcattt agatggagaa actggttttc aaaatatggt
      841 agaagatgag gcggtagtga gaacttattt aaaagaaagc tatcctgaat taccttactt
      901 catttttgcg cacagcatgg gaagttttat tatacgaacc tttatggcaa aacaccaagt
      961 tgatggagta attctcagcg gtagcggact tcaaccgata gctcttttaa aaatgggcca
     1021 aatgattaca aaacaaagag tgaaaaaaga tgatagaaaa agaagtggtt ttctaaataa
     1081 attagcattt tggggttata ataaaccatt taatgaaaat catcgtttta gttggctttc
     1141 gcgggatgtt gcgatttatg aagcctatga acaagatcca ttttgcggtc cagtagttgg
     1201 aacaagtggt tttttccata atctttttga agccgtaaag gtaagtcaac aaaaagaaac
     1261 attggaaagt gtgccaaagg atttgccagt gttgttgctt tctggaagtg atgatccggt
     1321 agggcatttc ggaaaagaca cacctaaaat tgctttatcc ttagaaaaag ctggggtaga
     1381 ggatgttact tataaaattt atgaagatgc tcgtcatgaa ctggtgaatg aaatatgtaa
     1441 agaaactgtt tttcaagatg taattgattg gttgaatgaa aaaagaaggt agcctaaaat
     1501 cataggctac cttcttttta attgcggatt tgaccgtctc caaaaataat atatttagtg
     1561 gatgtaagtt ctgttaagcc cattggtcca cgtgcatgaa gtttttgagt actaatgcca
     1621 atttcagcgc caaatcccat ggcaaaacca tcagtgaatc gagtagaagc attgatataa
     1681 acggctgctg cgtctacttt ttgatggaat gcttgaccag tcgcgtaatc attagaaata
     1741 attgcttctg agtgcttggt gccatattta ttaatatgat caatagcctc ttcagcggaa
     1801 tcgactactt taatagctaa aatgaaatct aaaaattcat cttcccagtc ggactctgtc
     1861 gcagcttttg cctcttgtaa aatttccttc gcacgttcat ccgcacgtag ttcgacatca
     1921 tattctttta gcgcagtttc catcgctgga agataatctt cggcgacatc tcgatgaatg
     1981 agcaaagttt ctgcagcatt gcatacagaa gggcgcgaac acttagcatt aactaaaata
     2041 tctatagcca tttgtttctc tgctgcttta tctacgtaaa tatgacaatt accagtacct
     2101 gtttcgatga ctggaacagt tgcattttca agaactgttt gaattaacct tgcgccccca
     2161 cgaggaatga gaacatctaa aaagcgattt aaccgcatca tgtctctagc agtttctcgt
     2221 gatgtatctt caattaattg gacactagaa cgagggaaac cagatgcctc aagggaatcc
     2281 tgaataacgg acattaaggc tttattggaa tcaatagcat cactaccacc tcgcaaaatc
     2341 accgcatttc cagttttaaa acaaagaaca gaagcatcga cagttacatt gggcctagat
     2401 tcataaataa taccaataac accaagtgga actcttgttt taccaatagt taactcggct
     2461 tcatttttcc acatatttgt tacttcaccg attggatctt ttaacgcgac cacttgttta
     2521 accgcttccg atatctcttt gattctttct tctgtaagac gaagacgatc aatcatcgtt
     2581 tcaggtgttc ctttttgctt agcgcgaaga atgtcctttt cattttcttg caaaagtgta
     2641 gccgtatgga taagcaaatc attacttaaa ttaagcagtg ctgcgttttt gtgttttgtt
     2701 gttgcttgtg ctagaaattg ggcagcttct ttagcgccac tccctttttt aatgagttcg
     2761 gtcatgtgaa agttcctcct ttttacttgc gaataaagta ccaatttgtt caccttgcat
     2821 aatattaaaa atgacggtag ggtttttacc gtttgttaaa atcatttttt ggttagaatc
     2881 catacaataa gaagcagcag aaagcttggt caacatacca ccagtcccaa atttagaacc
     2941 gcgtcctcca gcaagggctt caatttctgg agtgatttgg ttgatttcag agaacataac
     3001 agcctctgga tctgttgcag ggttactacc ataaaagccg tcaatatcag aaagcataat
     3061 aagcaaatca gcttgaacca gtttagcgac aatggctgaa agaagatcat tatccccgta
     3121 tttcgttaca tgctccagtt cttctacagc aacggtatca ttttcattta cgatagggat
     3181 aataccccgg cttaataaac tgtctaaagt attcataaca ttttcgcggc taatagggaa
     3241 gtcagttaca tcacgtgtaa gcaacacctg tccaaccact tgtccatatt caccaaaaaa
     3301 tttactataa atatgcatta gttcactttg accaaccgac gcgacagctt gaaggtcagg
     3361 gatacttgta ggtcttactg aaagctgtaa tttatgacaa ccaacaccga ttgccccaga
     3421 agaaacaaga atgacctctt ttccttcgtt acgtaaatca gataaaacca ttgctaattt
     3481 ttctatagta cgtaaattaa tatggccatt tccatacatt aatgtacttg taccaacttt
     3541 gatgactaat ctcttactat tttttaaaga ttcgcgcatt tctatgaccc ctctgctaat
     3601 aagataatac ttctatttta catgaaaatg cagatatgtc catattagaa tcaagtttat
     3661 gagcttcaga tttttaattt tgagtataaa aataagtcct aagaaatttt cttaggactt
     3721 attttttatt tagctgcttt actcgcggca gaaatgactg aaacttgttt caaaccttta
     3781 ctaataagtc gtaagataac gaaccaaaca acaatgatta aaacaatttg tttgaatgca
     3841 attgctggaa gcggattgaa cgggcaatcc caaatgaaat gtaaagcaat cggaataata
     3901 aaccatttcc agaaagttcc tgtgaaaatg tggtgcattc caagtttttg atcaccttta
     3961 gcgataacaa gtgcggcacc agtaatagca gcccaggcaa catggccgcc gatagactgc
     4021 caaccacggc taaagataac attgagcatc gtttcaccgg caatatgaat atctttgaat
     4081 aaaaaggcag catccacact atagttaaac gcgtacccaa gtgattcaaa tgcagcaaat
     4141 ccagccccaa cagcggcacc gataagtaaa ccatttaaaa tgtacttcga gtttaatgaa
     4201 cgaatgaaga gagcaacaat aatcattttc ccagtttctt caataaaacc aaccaaaagt
     4261 gcattaaaat aatttaattt tccaactgga ataatggagt aaataacaag tgttgcaaca
     4321 agcgctgcta caccaccgat aaagaacatt cgcactacat caaaaacgct gatgttacga
     4381 ggtgcattcg tttcgaaaaa gaataataaa acagaaaacg gaactgcaaa tgaaccaatt
     4441 accataaggc ccggtattgt attactgtta tcaaacaaat atgtacatgc tagaagtaaa
     4501 aaatacgtga cgattaacac taagaaaact cgggagaata cccaaggatg tggccaagaa
     4561 tgagggatat cacttattgc tggagtagta tacttagtac cagcaataaa gactttttcg
     4621 ccttcttctt tagagtgctt tttgaaaaca gcagagaaaa ggttgctaat ttttaattct
     4681 gaattcccgt ggtttccaat atgttgatat aattctgttt gcttaaatgc aatccactct
     4741 ggatgagggg atttttggac caatgtaaga ttattaatct ctttctttct atatagagca
     4801 atcatctcta catttgtaaa aggccccatt ttctgttcgt tctttttgaa gtaccattct
     4861 gacaaatgaa actccccctt tagcttttta ttttgactct attaattatt cccaaaaacg
     4921 ctaaaagtta aacgagcaaa ggaactaatc gtttattttc ttcgcttgtt cataaagaaa
     4981 attaatcgaa tcagctaaaa aagctgctgc ggactcattt agcggttgtc catctaaatt
     5041 taaatcatcc tcatatttta aatcttcact aattttagtt attcttttcc caatatcttt
     5101 ctcattttgg agttcactag gagcataggt tgggatgctt tgttggccaa gtaaataatc
     5161 gacactaaca tcataaagtg ttgcaatttg agtcaccatt tctaaatctg gttcccgaat
     5221 accatattcc caattgccat aagtggaagg tgcttttaaa ccaagccttc tagctgtttc
     5281 tgcttttgac caaccttgtt tttcccgtaa taaagtaagt ctgttactta aatttggcat
     5341 aatttcactc ctttttgttt gattatacaa tatcttactc agtttagcta cattttaaca
     5401 cataacgtat tattttctga ttgacatagt cgtattgtgt tgttagaatt gtattaacaa
     5461 ctcaaattgt gtagataagg agaagatgac atgaaaacag tagacaccag aagaattaat
     5521 acaacaaaaa ttcgagaatt acggttgcag cgaggaatca cccaagcttt cattgcgcga
     5581 cggatgggct ataggtacac atcaccgtat ttgacaaaaa acctataaat aattcttttg
     5641 attgactgac aattatttat aaaaaactta ttttcgttat aaccgcttta ttttcatcat
     5701 cttttacata ttcaattcct tcaataaaca tacttataaa atctgttttt tcagtaggag
     5761 ataatgaagt cca
//
LOCUS       DASEAA010000167         5762 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.167, whole genome shotgun sequence.
ACCESSION   DASEAA010000167 DASEAA010000000
VERSION     DASEAA010000167.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5762)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5762)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5762
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.167"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..394)
                     /locus_tag="U0342_002446"
     CDS             complement(<1..394)
                     /locus_tag="U0342_002446"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2423777.1"
                     /translation="METYLEIETLIKRIFNSFRHEVEAVLDKRLSGSEYRVLSLISSG
                     LTKTSELAKTLDVSASHITAITDTLVEEKFITRHRSEVDRRIIELKLTPNAEEFVKEI
                     DKKKKEMIVKRFAVFSEYEQAEFRKLLKK"
     gene            complement(431..1921)
                     /locus_tag="U0342_002447"
     CDS             complement(431..1921)
                     /locus_tag="U0342_002447"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S41 family peptidase"
                     /protein_id="HEM2423778.1"
                     /translation="MEESPQNEPNNVEKDEEQKAKPGNGYIKMKLFPFIMLLFAFVFV
                     TALVTTIVMSLGDDKQVKVSIPERKEFTKLYDVYDEITSKYYKDTKSTTMIDGAINGM
                     VNSLDDPYSTFMSKKESSEFNDTISASFEGIGAEIQEKDGAIVIVSPIKNSPAEKAGL
                     RPQDIITQVDGKSVKGDTATEATQKIRGEKGTKVTLTIQRSNEDKPFDVTITRDEIPI
                     ETVYKEMGSDKIAHVTISTFSETTYDELEKALKSLEKDGMKGLVLDLRGNPGGLLDQA
                     VSISSLFVPDGKIVVQEQDKDGDKSAIKADSSSHGDYKVKVPTTMLIDGGSASASEIL
                     AAAAKESGGIKLVGTKSFGKGTVQTATTLSDDSTLKLTVAKWLTPNSEWIHEKGITPD
                     VVVNMPDYATMTIPSSTKVYKNGDFGDDVKTIETLLKALDYNVGKVDGLYDTDTEYAV
                     QRFQAANKLDVTGIMTGVTTDKLVELTQKHLKETDPQLQKAKALVK"
     gene            complement(2076..2282)
                     /gene="copZ"
                     /locus_tag="U0342_002448"
     CDS             complement(2076..2282)
                     /gene="copZ"
                     /locus_tag="U0342_002448"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper chaperone CopZ"
                     /protein_id="HEM2423779.1"
                     /translation="MEKLTLNVEGMTCSHCEARVTKALSEVNGVKSAVVSLDEGTATV
                     EFEKGQVTEDALIDAVEEAGYEVA"
     gene            complement(2295..4508)
                     /locus_tag="U0342_002449"
     CDS             complement(2295..4508)
                     /locus_tag="U0342_002449"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991684.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-translocating P-type ATPase"
                     /protein_id="HEM2423780.1"
                     /translation="MSDKYVRQDLNIFGMTCAACSTRIEKSLNKADGVEKANVNLVTE
                     NAAVYYDPEVTSTEDLIKVVKHAGYDAAEKMSKEEKDAVLEKNFKKEVRRFILSAVLS
                     LPLLLTMVTHIPYIHEMAFAETIGNWINPTIQLVLATIVQFYIGWRFYDGAYKALRGK
                     SANMDVLVALGTSAAYFYSVVEYIRHMIDPSVMPHYYFETSAVLITLILLGKLLESYA
                     TSRTTESIAGLLELQAKEATVIREGKEWLVPVDSLKIGDIILVRPGEKVPMDAEIISG
                     ETSIDEAMITGEPVPVEKKPGDSVIGATINFDGAFQAKITKRMEETVLESIIRLVEEA
                     QGIKAPIQRLADRISGIFVPIVLGIAAVTFIIWYLVTGTVDGSLEAAIAVLVIACPCA
                     LGLATPTAIMAGTGKGAESGILFKGGEHLERTSKVDTIVFDKTGTLTEGKLEVSDKKA
                     ANDHFFPYLFLMEQQSEHPIAKAIIKMLEPENIDASAVKQGKIRAKAGHGMTGNLDDS
                     KVELGAYRYVSSLTTIPKEDDELIESWMHAGKTVVAMAIDGVYAGALALSDTPRPEAK
                     EAIQKLKAQGIKTAICSGDQSVVVENMAKDLGIDMFFAEQLPNDKSALVEKLQQDGHI
                     VAFVGDGINDAPALAASDIGISIGTGTDIAIETGDVTLVSHRLTLIPETIELSKATMR
                     NIRQNFFWALAYNCAGIPIAALGLLAPWVAGLAMAFSSVSVVTNALRLKRYKFKS"
     gene            complement(4523..4816)
                     /gene="csoR"
                     /locus_tag="U0342_002450"
     CDS             complement(4523..4816)
                     /gene="csoR"
                     /locus_tag="U0342_002450"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="copper-sensing transcriptional repressor CsoR"
                     /protein_id="HEM2423781.1"
                     /translation="MKHDQPIVPRKEDETKLLQNRLRRIEGQIRGIAQMVEDDRYCTD
                     ILVQISAANKALKNVGLQVLEHHTAHCVVDAAKNGEDDVMEDLLKAIRQFSKT"
     gene            complement(4940..>5762)
                     /locus_tag="U0342_002451"
     CDS             complement(4940..>5762)
                     /locus_tag="U0342_002451"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465380.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="D-alanyl-D-alanine carboxypeptidase family
                     protein"
                     /protein_id="HEM2423782.1"
                     /translation="SSLLTIALAVSISCVHTVEDQYFGGTNADSIAKVEQKSSGNQTL
                     AELEKDPLYPYIDKQNKLTEKDGIKYIENEENMLVLANKDYSLQPTYTPPDLVRPNVT
                     FSFGSQQVEKAQLRKEAATALEEMFVAANKDGKKLFAVSGYRSYKRQQEVFQAEVNAK
                     GDQKAREAVAYPGTSEHQTGLAMDISSENQSYELTEAFGTTPEGKWLQENAHNYGFIL
                     RYMKGREAITKYQYESWHYRYVGKDAATIIYENNWTLEEFFEHVKALQKKVDAAK"
BASE COUNT         1529 a         1244 c          981 g         2008 t
ORIGIN      
        1 attttttgag cagtttgcgg aattctgctt gttcatactc agaaaaaaca gcaaaacgtt
       61 ttacaatcat ttcttttttc tttttatcaa tttctttgac aaattcctcg gcatttgggg
      121 ttaatttcag ttcaataatt cggcggtcta cttctgaacg atgtcgtgta ataaactttt
      181 cttcgactaa agtatccgta atggctgtga tgtgactggc tgaaacatca agcgttttag
      241 ctaattctga tgttttcgta agtccacttg aaatcaagct caagacccga tactcgctac
      301 cacttaacct tttgtcgagt actgcctcta cttcatgacg aaaactatta aaaatccgct
      361 taatcaatgt ttcaatttct aagtatgttt ccattttcgc tacctccagt ttttcaaaaa
      421 agtcgtacgt ttacttcacc aaggcttttg ctttttgtag ttgtggatct gtttctttta
      481 gatgtttttg tgttaattcg actaatttat cggttgttac acctgtcata attcctgtca
      541 catctaattt atttgctgct tggaatcttt gaacagcata ttctgtgtct gtatcgtata
      601 agccatctac tttcccaaca ttgtaatcta gtgcttttag caatgtttca atggttttaa
      661 catcatcacc gaaatcgcca tttttgtaga ctttggtgga agacgggata gtcatagttg
      721 cataatctgg catgttcaca actacatctg gcgtaatacc tttttcatga atccattcgc
      781 tattaggtgt taaccatttt gcgacagtta atttaagcgt ggagtcatca gataaagttg
      841 ttgccgtttg gaccgtacct ttaccaaatg atttcgtgcc gacaagttta atgccaccag
      901 attcttttgc tgcagcagca aggatttctg aagcacttgc actaccacca tctattaaca
      961 tagttgttgg tacttttact ttataatctc catgtgagct actatccgct ttaatggctg
     1021 atttatcacc gtctttgtcc tgctcttgta caacaatttt gccatcggga acaaagaggc
     1081 tagaaatcga aactgcttga tcaagtaacc caccaggatt tcctcgcagg tcaagaacaa
     1141 ggcccttcat gccatctttt tcaagggatt tcaatgcctt ttcaagctca tcataggttg
     1201 tttctgaaaa tgtactaatg gtgacgtgcg caattttgtc actgcccatt tctttgtaca
     1261 ccgtttcgat tggaatttca tcacgagtaa tcgtgacatc aaatggttta tcttcgttgg
     1321 aacgttgaat ggtcagggtt actttggtgc ctttttcacc acggattttt tgtgttgctt
     1381 ctgttgctgt atcgccttta acagacttcc catctacttg tgtaataata tcttgtggcc
     1441 gtaaaccagc tttttcggct ggagagtttt tgattggcga aactattaca atagccccat
     1501 ctttttcttg aatctccgca ccaatacctt caaaactagc agaaattgta tcgttaaact
     1561 ctgaagattc ttttttcgac ataaatgtgg aatatggatc atctaatgaa ttgaccatac
     1621 catttattgc tccatctatc atcgttgtag attttgtatc tttataatat ttgcttgtaa
     1681 tttcgtcgta tacatcgtag agcttggtaa attcttttcg ttctggaatg ctcactttta
     1741 cttgcttgtc atcccctaaa gacattacga ttgtagtcac taatgccgtc acaaaaacaa
     1801 aagcgaatag tagcattata aatgggaata acttcatttt tatataacca ttgccgggtt
     1861 ttgctttttg ttcttcgtct ttctccacgt tatttggttc gttttgtggg gattcttcca
     1921 tctttcttca ccactttcta tgtaaaatgt ggctagtaat agcacatttt atttaactca
     1981 tttattttac cagttttcca ttcattttgg tatctttttt tcatgctaca caaaaaagga
     2041 ggattctgga cagaatcccc cttttcgctt ttaaattaag ctacttcata acctgcttct
     2101 tccacagcat caattaacgc atcttctgtc acttgtcctt tttcaaactc aacagtagct
     2161 gttccttcat caagtgatac tactgcactt ttcacgccat taacttctga taaagctttt
     2221 gttacgcgag cctcgcagtg agaacaagtc ataccttcta catttaatgt taatttttcc
     2281 atgttaaatt cctcctatga tttaaattta tatcttttta agcgaagtgc gtttgtgaca
     2341 acagaaacgg aactaaatgc catcgcaagt cctgctaccc aaggggcaag taagcctagt
     2401 gccgcaattg gaatacccgc acagttatat gctagcgccc agaaaaagtt ttgacggatg
     2461 tttcgcatgg ttgctttgga aagttcgatt gtttctggaa tgagtgttaa acgatgactt
     2521 acaagtgtta catctcctgt ttcaatcgca atgtcagttc cagtaccgat actaatccca
     2581 atatcacttg ccgcaagagc tggagcatca ttaatgccat caccaacgaa tgcaacgata
     2641 tgaccgtctt gctgtaattt ctcgactaag gcgctcttat catttggtag ttgttcggca
     2701 aagaacatat caatacctaa atctttagcc atattttcta cgacaacaga ttggtcccca
     2761 gaacaaattg ctgttttaat accttgtgct tttagttttt ggatagcttc ttttgcttct
     2821 ggtcgtggtg tgtcagataa agcgagggca cctgcgtata caccatcaat tgccattgct
     2881 acgactgttt ttcctgcatg catccaactt tcgattaatt catcatcttc ttttggaatc
     2941 gttgtaaggg aagaaacata gcggtaagca cctagttcca ctttactatc atccagatta
     3001 ccggtcatgc cgtgcccagc tttcgcgcgg attttccctt gtttcactgc ggaagcatct
     3061 atattctctg gctctaacat cttaataatc gctttcgcaa tcggatgctc tgattgttgt
     3121 tccattaaga ataaataagg gaaaaagtga tcattggctg cttttttatc actcacttct
     3181 agtttacctt ctgttaaagt accagttttg tcaaaaacga tagtatccac tttggaagta
     3241 cgttctaaat gttcgccacc tttaaataat atcccacttt cggcgccttt accagttcca
     3301 gccatgatag cggttggcgt tgcaagacca agcgcacagg gacaggcgat aactaatacc
     3361 gcaatcgcag cttcaagtga accatccacc gttccagtaa caagatacca aataataaag
     3421 gttacagcag caatcccaag tacaattggt acaaatatgc cggaaattct atctgccaaa
     3481 cgttgaattg gcgctttaat accttgcgct tcttccacca aacgaataat ggattctaaa
     3541 acggtttctt ccattcgttt cgtaattttt gcttggaaag ccccgtcaaa gttaatcgtt
     3601 gcgccaataa cagaatcgcc tggtttcttc tctactggta caggttcccc agtaatcatc
     3661 gcttcatcaa tactcgtttc accagaaata atttcggcat ccatcggaac tttttcaccc
     3721 ggacgaacaa ggataatatc gccaattttc aatgaatcta ctggcactaa ccattctttt
     3781 ccttctcgaa taacggtcgc ttcttttgct tgtaattcaa gtaaaccagc aatagattcg
     3841 gttgttctcg atgttgcgta tgattcaagt aatttaccta acaagattaa ggtgattaac
     3901 acagcacttg tttcaaagta gtaatgcggc atcacgctcg gatcaatcat gtgacgaatg
     3961 tattccacta cactatagaa ataagcagca gaagtcccaa gtgcgactaa tacatccata
     4021 tttgcacttt tacctcgaag cgctttataa gccccatcat aaaaccgcca accaatataa
     4081 aactgaacaa tcgttgcgag tactaattgg atggttggat taatccagtt accaatcgtt
     4141 tccgcaaacg ccatttcatg aatgtacgga atatgtgtca ccatggtaag aagtaatggt
     4201 aaggaaagaa ccgccgaaag aataaaacgt ctcacttctt ttttgaaatt cttttctaac
     4261 acagcatctt tttcttcttt agacattttt tccgccgcgt cataacccgc atgtttaaca
     4321 actttaatta aatcttctgt cgatgtaact tccgggtcgt aatatacggc tgcattttcc
     4381 gttactaagt tgacattcgc tttttctaca ccatccgctt tatttaacga tttttcaatt
     4441 ctcgtggaac aggccgcaca agtcattcca aaaatgttta aatcttgtct tacatattta
     4501 tcactcatcg tatatacccc cctcaggttt tcgaaaattg acgtattgct ttaagtaagt
     4561 cctccattac gtcatcttcc ccattttttg ctgcatctac aacacagtgt gctgtatgat
     4621 gttctagtac ttgtaaacca acatttttga gcgctttatt cgctgctgaa atttgaacta
     4681 aaatgtctgt acaatatcta tcatcctcga ccatttgagc gataccgcgg atttggcctt
     4741 cgatacgtcg caaacgattt tgaagtaatt tcgtttcatc ttctttgcgt ggaacaattg
     4801 gttgatcgtg tttcattttt tctcctcctt tgtttctaca attaacagta taccccctat
     4861 aggtatttta tgcaaccatt taatttctga gaacaaaaaa aagccataaa caaatgcttg
     4921 tttatggctc aaaatcttgt tatttcgcgg catctacttt cttttgaagt gccttaacat
     4981 gttcaaaaaa ttcttctaaa gtccagttgt tttcgtaaat aatcgttgcc gcatccttac
     5041 caacataacg ataatgccaa gattcatatt gatacttcgt gatagcttct cgccctttca
     5101 tataacgcaa gataaaacca taattgtggg cattttcttg caaccatttg ccttcaggag
     5161 ttgttccgaa tgcttctgtg agttcatatg attggttttc tgatgagata tccatcgcta
     5221 aaccagtttg atgttcgcta gtacctggat acgctactgc ttctctcgct ttttggtcac
     5281 ctttcgcatt tacttctgct tggaagactt cttgctggcg tttgtacgat cgataaccag
     5341 atacggcgaa tagtttctta ccatctttgt tcgcagctac gaacatttct tctaatgcag
     5401 ttgctgcttc ttttcttagc tgtgcttttt cgacttgttg gctgccaaaa gagaatgtaa
     5461 catttggacg aaccaagtca gggggggtat atgttggttg caatgaataa tctttgttag
     5521 ctaaaaccaa catattttcc tcattttcaa tatactttat accatctttt tctgttaatt
     5581 tattttgttt atcaatgtat ggataaagtg gatctttttc taattccgca agtgtttgat
     5641 tgcctgacga tttttgctcc actttagcga tggaatcagc atttgtgcca ccaaaatatt
     5701 gatcttccac tgtgtggaca caactgatgc taacagctaa agcaattgtt aataaagaac
     5761 tc
//
LOCUS       DASEAA010000168         5722 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.168, whole genome shotgun sequence.
ACCESSION   DASEAA010000168 DASEAA010000000
VERSION     DASEAA010000168.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5722)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5722)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5722
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.168"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..608
                     /locus_tag="U0342_002452"
     CDS             <1..608
                     /locus_tag="U0342_002452"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2423783.1"
                     /translation="DIEIMIASHSDADNIGGLPEVMNNIKVKSLYAPKSTNTTAAYKN
                     FVNTAKKKKLTIKTAKAGVKLPVKGVNAQFVGPVKTYGKTDRNNWSAVLHVAYKKNTF
                     LFTGDAQTKAENDMIKAKKTLRADVLKVSTQGSKAATSKAFVNVVKPKYAIISVGKNG
                     YGHPTSQTVNTLTKAKAKVYRTDRNKTVVVTGNGSSYSIGK"
     gene            866..1528
                     /locus_tag="U0342_002453"
     CDS             866..1528
                     /locus_tag="U0342_002453"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463805.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423784.1"
                     /translation="MAYPFNHKEFVAMMEQYNLKSNSITIPEHTILNDLVTENRDCVY
                     LLKSGILAGYIDFDNDKIYSIFTSNFFMGYYTIFDNASLVLTYQTLTECELIIYKKKD
                     IEYSLSLFPENFSFQYTIMRTIAKHGYYKSLLQYRDKKDQLAFVFEMLVKILDIPVED
                     GVAVLPKSISTTVIKNYCTLSKAFFYSQLKELKEAGIISKVKLQWRINMEALSEKNNS
                     IN"
     gene            complement(1565..2068)
                     /locus_tag="U0342_002454"
     CDS             complement(1565..2068)
                     /locus_tag="U0342_002454"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423785.1"
                     /translation="MKRNYHVKFLNEKDVELAEAVCAASEDYYLMEQDKPASKSDALK
                     IITEIPNGKTRFDKFVLAVLDENEKPIGLVDIVSDYPRKGRWFIGLLLLTPDARHNGL
                     GKVLHQTIKEWANDGGADSLALGVLAENEKGRGFFEYLGYTKEETKQANYGGKEQEVS
                     IFTLAIK"
     gene            2204..3016
                     /gene="yidA"
                     /locus_tag="U0342_002455"
     CDS             2204..3016
                     /gene="yidA"
                     /locus_tag="U0342_002455"
                     /EC_number="3.1.3.23"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-phosphatase"
                     /protein_id="HEM2423786.1"
                     /translation="MYKLIAIDIDGTLLTDDHKVTDEVKEAIRQAKLKGVKVVLCTGR
                     PLVGVENYLTDLELREEGDYVISFNGAFVQDTFTKEVISHLTLGIDDLKEIYQVSLDS
                     NLHMHFFDDKALYTPNREIGKYTIVEAYLTGSQLIYKEIENVPEDFIMSKAMFIEEAP
                     ELEVGIAKIPESFREKYHLVRSTPFYLEILNRDASKGNAVKELSEKLGIKQSEVICIG
                     DQENDVTMLEFAGLGIAMGNAPERIKQLADYTTASNNDSGVAKAIQKFVLDK"
     gene            3136..4572
                     /locus_tag="U0342_002456"
     CDS             3136..4572
                     /locus_tag="U0342_002456"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463802.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
                     /protein_id="HEM2423787.1"
                     /translation="MEHQKRSPFPKDFLWGSASAAYQIEGAWDADGKGKSVWDEYVRI
                     PGTTFKGTNGDVAVDHYHRYKEDVKLMADAGLKAYRFSIAWTRIFPNGKGEVNEAGLK
                     FYDNLIDELLKYDIEPLVTLYHWDIPQALFDEYGGWESRQVIEDFTNYSTTLFKRYGD
                     RVKYWVSLNEQNIFVGMGYGQALHPPKVSDPKRMYAVNHIANLANASVIKAFHEIVPD
                     GKIGPSFAYTPHYPIDTDPKNVQAADDAEELNSYFWMDMYAFGRYPKAVWKYLEENDI
                     APVIEDGDMELLASAKPDFMGVNYYQSATVAYNPLDGVGQNNEMNFTGKKGSTKETGV
                     PGVYKKVVNPFVKTTNWDWTIDPKGLQIALRRINSRYALPILITENGLGEFDKLVDGE
                     VNDDYRIDYLSAHATAIRDAISDGVDMLGYCTWSFTDLLSWLNGYQKRYGFVYVDRDV
                     EDDAPMTRIPKKSYYWYKQVIETNGADL"
     gene            4576..5199
                     /locus_tag="U0342_002457"
     CDS             4576..5199
                     /locus_tag="U0342_002457"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728057.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEM2423788.1"
                     /translation="MADLQDWLARIQAKITALKEKDPDLNLFGSESHAYKLNQPLSNQ
                     TLTEFENEHQITLPQDYRAFLEQIGNGGMGPYYGLETLADGLCASLDYKDEKYGVQTL
                     SEPFPHTDDWTAPGYKEGMSDEDYDAWQELCFQDKEVFGLLRIANFGCGVSINLVVNG
                     PSYGEIWVDDRNNDNGVYPDFYFGNEERLGFLEWYELWLDKSIEEIE"
     gene            5333..>5722
                     /locus_tag="U0342_002458"
     CDS             5333..>5722
                     /locus_tag="U0342_002458"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2423789.1"
                     /translation="MKKFILASLACTTLISFSPLVGQVEVSAATTNIATAPEKNLQEA
                     PPATVDQIFPDDALAFKVAQELGVSEDTVVTQEQLDTIETMVYVDFGVEDLTGMEYLH
                     NLKFVDLSQNKISNLENLANLTELETVS"
BASE COUNT         1904 a         1029 c         1096 g         1693 t
ORIGIN      
        1 aagatattga gataatgatt gcttctcatt cagatgcgga taacattggt ggattaccag
       61 aagtcatgaa taatatcaag gtaaaaagcc tttatgcacc aaaatccaca aacacaacag
      121 ccgcttacaa aaattttgtg aacacggcga aaaagaaaaa actaaccatt aaaaccgcaa
      181 aagcaggcgt aaaactccct gtcaaaggag taaatgcgca gtttgttggt cctgttaaaa
      241 cttacggaaa aacagatcga aacaactgga gtgctgttct ccacgtcgca tataagaaaa
      301 acaccttcct tttcacagga gatgcgcaaa caaaagcaga aaacgatatg attaaggcaa
      361 agaaaacctt acgagctgac gtgttaaaag taagtacaca aggttccaaa gctgcaacaa
      421 gcaaagcgtt tgtcaatgtc gttaaaccaa aatacgccat tattagcgtt gggaaaaatg
      481 gatatggcca ccccacttca caaaccgtta acacattgac aaaagcaaaa gcgaaagttt
      541 atcgaacaga tcgtaataaa accgtcgttg taacaggcaa cggctccagt tattctatcg
      601 gaaaataatt tatgcttata cgaaaagcca ataataaaga tacgacttta ttattggctt
      661 tttccaacta tgcgtattgg ttaacctttc tgagttagaa ataactcaaa tatgacaaaa
      721 atattgcggt tacattggct aaaaaagggt attttcataa aaaagaggtt ttttagaagt
      781 ctatttttag tacttgtgca aacttttacg atgatacaat gtatttgtat tagtacaact
      841 gaatctgaag gagacgaagt aaaaaatggc ctatccattt aatcacaaag agtttgttgc
      901 aatgatggaa caatacaatt taaaatctaa cagcatcaca atacctgaac ataccattct
      961 aaatgatcta gttactgaaa atcgggattg tgtgtattta cttaaatctg gtatattggc
     1021 cggatatatt gatttcgaca atgataaaat ttattctatt ttcacatcta attttttcat
     1081 gggatattat acgattttcg ataatgcatc ccttgtttta acgtatcaaa cactaactga
     1141 gtgcgaattg attatctaca agaagaaaga tatcgaatac tcgctctctc tcttccctga
     1201 aaactttagc ttccaataca caattatgag aactatcgcc aaacatggtt actacaaatc
     1261 acttttacaa tatcgcgata aaaaagatca attggctttt gtatttgaaa tgcttgtcaa
     1321 aatcctcgat attccagtgg aagacggcgt cgcagtacta ccaaaatcta ttagtacgac
     1381 agtcattaaa aactactgta ccctgtcgaa agccttcttc tattctcaac ttaaagaatt
     1441 aaaagaagcc gggattattt caaaagtaaa actgcaatgg cgtattaaca tggaagctct
     1501 ttcagaaaaa aacaatagca taaactaaga aaaaggatgc agttttatga gctgcatcct
     1561 ttttttattt aatcgctaaa gtgaaaatac taacttcttg ttcttttccg ccataattag
     1621 cttgtttggt ttcttctttc gtgtagccaa ggtattcaaa gaatccacgc cctttttcat
     1681 tctcagctaa aactcctaag gctaatgaat ctgccccgcc gtcattcgcc cactctttga
     1741 tcgtttgatg aagtactttt ccaaggccgt tatgacgagc atctggcgtt aaaagaagta
     1801 atccgataaa ccagcgccct tttcgcggat agtcagaaac aatatctact aagccgattg
     1861 gtttttcatt ttcatccaat acagctagta caaacttatc gaatcttgtt ttcccgtttg
     1921 gaatttctgt gataattttt aatgcatcac ttttcgatgc aggcttatct tgttccatta
     1981 aataataatc ttcggatgcc gcgcaaacag cttctgcaag ttctacatct ttttcattta
     2041 aaaatttcac atgataatta cgtttcatta tttcactctt ttctttatca agtttccaag
     2101 tcaatcatgc cataaattcc ctgttgtttc aatagatagc cagaaatcca tctgaattta
     2161 tgctatacta gaatgagttt atgatggaaa aggagctagt atattgtata aattaatcgc
     2221 gattgatatt gatggaacac tactgacaga tgatcataag gttacggacg aagtaaaaga
     2281 agccattcgc caagcaaaac taaaaggcgt aaaagtggtt ctttgtactg gacgtccgct
     2341 tgttggtgta gaaaattatc tgactgacct tgaattacgt gaggaaggcg attacgttat
     2401 tagttttaac ggcgcatttg ttcaagatac gtttacaaaa gaagttattt ctcacttaac
     2461 gcttggcatt gacgatttaa aagaaattta tcaagtgagt ttagatagca atttgcacat
     2521 gcatttcttt gatgacaaag cgctttatac gccgaaccgt gaaatcggca aatacacgat
     2581 tgtcgaagct tatcttactg gtagccaact gatttataaa gaaatcgaaa acgtgccaga
     2641 agattttatt atgtcaaaag caatgtttat tgaagaagcc cctgagctag aagttggtat
     2701 tgcgaaaatc ccagaatcat tccgcgaaaa atatcatcta gttcgtagca cgcctttcta
     2761 cttggaaatt ctaaatcgtg acgctagtaa aggtaacgcg gtcaaagaac tttccgaaaa
     2821 acttggcatt aagcaaagcg aagttatctg cattggcgac caagaaaatg atgttacaat
     2881 gcttgaattt gctggtcttg gtattgcgat gggcaatgct ccagaaagaa ttaagcaatt
     2941 agctgactat acgactgcat cgaacaatga tagtggtgta gcaaaagcaa ttcaaaaatt
     3001 tgtgctggat aaataaaaca aaaacgcaga ttcgaatagg aatctgcgtt ttttaactat
     3061 ctttttaaaa gaatatactt taaaatatat tagtagagtt ttttaataaa aatcgcttta
     3121 atggaggtta tattaatgga acatcaaaaa cgttcaccat tcccgaaaga tttcttatgg
     3181 ggttctgcat cggcagctta tcaaatcgaa ggcgcatggg acgcagacgg taaaggtaaa
     3241 tcagtttggg acgaatatgt ccgcattcct ggaactactt tcaaaggtac aaatggcgat
     3301 gtagctgtcg accattatca ccgttataaa gaagacgtaa aactaatggc agacgctggc
     3361 ctaaaagctt accgtttctc tatcgcttgg actcgtattt ttccaaatgg taaaggcgaa
     3421 gtgaatgaag ctggcttgaa attttatgat aacttaattg atgagttgct taaatatgac
     3481 attgaaccac ttgtaacgct ttatcactgg gatatcccac aagcattatt tgatgaatac
     3541 ggtggctggg aatctcgcca agttattgaa gatttcacaa attattccac aacgctattc
     3601 aaacgttacg gcgaccgcgt gaaatattgg gtttccttga atgagcaaaa tatctttgtt
     3661 ggtatgggtt atggtcaagc gcttcaccca ccaaaagtta gcgatccaaa aagaatgtac
     3721 gcagtaaacc acattgcgaa cttagctaat gcgagtgtta tcaaagcttt ccacgaaatc
     3781 gttcctgatg gaaaaattgg accaagtttt gcttacacac cacattatcc aatcgacaca
     3841 gatcctaaaa acgttcaagc tgccgacgat gcagaagaat taaacagtta tttctggatg
     3901 gatatgtatg cttttgggcg ctatccgaaa gcggtttgga aatatttaga agaaaacgat
     3961 attgcgccag ttatcgaaga cggcgatatg gaacttcttg cttctgcaaa accagatttc
     4021 atgggcgtaa actattacca atccgcaact gttgcttaca acccgcttga tggcgttggt
     4081 caaaacaacg aaatgaactt cactggtaaa aaaggtagca cgaaagaaac tggtgtccct
     4141 ggcgtttaca aaaaagtcgt taatcctttt gtgaaaacaa cgaactggga ctggacaatc
     4201 gatccaaaag gcttacaaat tgcgcttcgt cgtattaaca gccgctatgc tttaccaatt
     4261 ttaattacag aaaacggttt aggtgaattt gataaattag tggacggaga agtaaacgat
     4321 gactaccgta ttgactatct aagcgcgcac gcaactgcta ttcgcgatgc aatcagtgat
     4381 ggtgttgata tgttaggcta ttgtacttgg agcttcacag accttctaag ctggttaaac
     4441 ggctatcaaa aacgttacgg ttttgtttat gttgaccgcg atgtggaaga tgatgcgcca
     4501 atgacacgta ttccgaagaa aagttattac tggtataaac aagtgattga aactaatgga
     4561 gcagatttat aaatgatggc tgaccttcaa gattggctag ctagaatcca agcaaaaatc
     4621 actgcgttaa aagaaaaaga tcccgatttg aatttatttg gttcagaaag ccacgcctat
     4681 aaacttaatc aaccattgtc taatcaaacg cttaccgagt ttgagaatga gcatcaaatt
     4741 accttacctc aagattatcg cgcttttcta gagcaaattg gtaatggtgg aatgggtcct
     4801 tattatggct tagaaacact tgcggacggg ctttgcgcct cgcttgatta caaggatgaa
     4861 aagtacgggg tgcaaacatt aagtgagcct tttccacata cagatgattg gaccgctcct
     4921 ggttataaag aaggaatgtc cgatgaagat tatgatgctt ggcaagaact gtgcttccaa
     4981 gataaagaag tatttggact tctgcgtatc gctaattttg gttgtggcgt ttcgattaac
     5041 cttgttgtaa acggtccttc ttatggagaa atttgggtgg atgacagaaa taatgataat
     5101 ggcgtctatc ctgattttta ctttgggaat gaagaacgtt taggctttct tgaatggtat
     5161 gagttatggt tagataaatc tatagaggaa attgaataaa gaaaaaaccg ctaaaaagaa
     5221 gcatactctt tttagcggtt tttttatgca atgttcatat gtgatggctt tttattttta
     5281 aataatttgc atgctatact ccatttatat tatagaaaag gagtaggatg acatgaaaaa
     5341 atttattcta gcaagccttg catgtacgac tttgattagt tttagtcctt tggtaggaca
     5401 agtcgaagta agcgctgcta caacaaacat tgccactgcc ccagaaaaaa atttacaaga
     5461 agctcctcca gccacggttg atcaaatttt cccagatgat gctctagctt ttaaagtcgc
     5521 acaggaacta ggtgtttccg aggatacagt cgttacacaa gaacaactag atactatcga
     5581 aacaatggta tatgtggatt tcggtgtgga agatttaaca ggcatggaat atttacacaa
     5641 cttaaaattt gtagatttaa gccaaaataa aattagcaac ttagagaatc tcgctaattt
     5701 aacagaatta gaaacggtat ca
//
LOCUS       DASEAA010000169         5666 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.169, whole genome shotgun sequence.
ACCESSION   DASEAA010000169 DASEAA010000000
VERSION     DASEAA010000169.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5666)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5666)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5666
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.169"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            30..782
                     /locus_tag="U0342_002459"
     CDS             30..782
                     /locus_tag="U0342_002459"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423790.1"
                     /translation="MAIKKLNDFYFKKLGNWNLIHSFLKGFWRAFFFLLLLLLIADLI
                     VMKFVNDRYFIPVILLSLLCIPLLYYILIYSRAKKFIRTRYQLRSFAELTTMRRYLLY
                     AYLEKSGFSTRADLEKLIRFIHSEMAEEKKNYQPLSTVVGVFIAAFLAILGGTFLFLM
                     DDVVERLIAAVLIMVMAILLYIVGTFIMSIIRSKSENNTKKERVLTKEIIAIQTAMLV
                     SENTSYHPFLAMERKIAENDFLKEIITSRSFL"
     gene            818..1465
                     /locus_tag="U0342_002460"
     CDS             818..1465
                     /locus_tag="U0342_002460"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464299.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2423791.1"
                     /translation="MTTKRKETRESVCYREIKKKIRNGELKPGDRLIENTLSQQLEIS
                     RTPIRKAIGMLAADGYVEYNDFRGAFVRDSIINKERYFEMTEIIGLFLKQAIQKIRTK
                     KIAFNKMRVVAKLVEIEREQPTDPATYFEYEKWFVSDLLTYMKNNYYLKISDDFFNNI
                     QEFGDEEVIKIAQNACVKTIANIQRFIDALDVQDYDKCIAIIDQVIDAHVLVAYR"
     gene            complement(1506..2495)
                     /locus_tag="U0342_002461"
     CDS             complement(1506..2495)
                     /locus_tag="U0342_002461"
                     /EC_number="1.3.1.95"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acryloyl-CoA reductase"
                     /protein_id="HEM2423792.1"
                     /translation="MKSFQALFIEKEADNTSLHFRETTIDNLPENEVTIEVHYSGINY
                     KDGLAVLPDGKIVSEYPFIPGIDASGVVVHSKSDQFQVGDEVIVTSYDFGVSYFGGYS
                     EFIRVPAAWVVPLPDGLSLKEAMILGTAGFTAALSVDALEFSGVTPDAGKIAVSGATG
                     GVGSLSSAILSKRGFSVVASSGKSDAKEFLEKFGVSEIVLREAFQPEKVRALDKQLYA
                     GAIDCVGGKPLSYLLTAVQYGGAVTTCGMSAGGKLDTTVFPFILRGIQLFGIDSVLCP
                     MPKRERIWNRLATDFKLTNLESLVTEVGFSELPEALHQVMNGGVTGRYLVKIK"
     gene            2674..3603
                     /locus_tag="U0342_002462"
     CDS             2674..3603
                     /locus_tag="U0342_002462"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diacylglycerol kinase family lipid kinase"
                     /protein_id="HEM2423793.1"
                     /translation="MGKALLIVNPSSGKEKGKTYQGKTEEVLKKRYDEVEVRLTEKAG
                     DATEFASWAAEQGFEAVIAMGGDGTLNETINGLAIHEKRPDFGFIPLGTVNDLARSVG
                     IPLKPEKAIQALEKAIAVPMDIGRIGDQYFMNVLAIGMIAQAVDQVSVEQKTKFGSVA
                     YFLEGLKAFNRNELLHFKIEYDEEVWEGEAALVVAGLTNSVGGMESWAPDAKIDDGYL
                     HIIILTKLGLLDAANMIPQLIRGNLKNSDGVVYIKTKKLTIDASGDDLSINVDGDPGP
                     GVPAEIEVLGSHLNILAPKKSSKKRFGPFILKK"
     gene            3643..3975
                     /locus_tag="U0342_002463"
     CDS             3643..3975
                     /locus_tag="U0342_002463"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423794.1"
                     /translation="MEEELEVIHKGLANAKNGFKAVPGKLYLTATYIVHKPNDYFDEE
                     INIPLNRVAKIRGVRTKILGKELLSNILEIDMISGVKYQFVVNKQKKWLEAVSEVLES
                     RGESEKLG"
     gene            complement(4013..4879)
                     /locus_tag="U0342_002464"
     CDS             complement(4013..4879)
                     /locus_tag="U0342_002464"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2423795.1"
                     /translation="MTILAFDLGGTAVKFGVLTTAGEILEKGKFKTPDNLDEMLQSLM
                     DVKANYDYTFQGAAFSCPGAVNNETGIIGGASAIPYIHNFPFKQLLEEKLGLPVTMEN
                     DANCAALAEVWIGAAKDKQDIIFMILGSGVGGAVIRGGKVHHGANLHGGEFGYMLMDR
                     DGRTLSELGTVVNAATRIAERLEVPKASIDGLRAFELRAEGNKIAKEELDTMFYYLAR
                     SIFNLQYALDPELVVIGGGVSERADFIQELTEYVAKVKASVPIATISPTVVGCHFGND
                     ANLIGATAFHLA"
     gene            5038..5421
                     /locus_tag="U0342_002465"
     CDS             5038..5421
                     /locus_tag="U0342_002465"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423796.1"
                     /translation="MEIKVQKKLTDGRIAFSSEYGECVGIWADEDPEPSRVYTVEITI
                     PDMISAELLHESEEKHCALEIDEEGLVHVIGKLEDYEEDGFAVLRLEESIICFDTKFS
                     EEIEMLHGRFVEFVIPEIKLSNVGI"
BASE COUNT         1886 a         1016 c         1102 g         1662 t
ORIGIN      
        1 aatttaggaa aaaaggaaaa ggtgtagaaa tggccatcaa aaaattaaat gatttttatt
       61 ttaaaaaatt agggaactgg aatttaatac atagcttttt gaaaggattt tggcgagcat
      121 tttttttctt gctactattg ttactaattg ctgatttgat tgttatgaaa ttcgtgaatg
      181 atcgttattt tattccagtt attttattaa gtttattatg tattcctctc ttatactaca
      241 ttttgattta cagtcgagct aagaaattca tcagaacacg gtatcaattg cggagttttg
      301 ctgaactaac aaccatgcgc cgctatttat tatatgctta tttagaaaaa agtggtttta
      361 gtacacgagc tgatttggaa aaattaattc gttttattca ttctgaaatg gcagaagaaa
      421 agaaaaatta tcaaccactc agtactgttg tgggcgtttt tatagcagca tttttagcaa
      481 ttttaggcgg tacatttcta tttttgatgg atgatgtggt ggagcggctt atcgcagcgg
      541 ttctaatcat ggtaatggca attttacttt atattgtagg cacttttatt atgtcgataa
      601 ttcgctctaa atcagaaaat aatacgaaaa aagaacgggt attaacaaaa gaaattatag
      661 caattcaaac ggcaatgctt gttagtgaga atactagtta ccacccattt ttagcgatgg
      721 agagaaaaat agctgaaaac gattttttga aagagattat tacatcacga tcctttttat
      781 aaacacaagg ttatagacat atttaggagg cagaataatg acaaccaaac gcaaagagac
      841 tagagaaagt gtttgttatc gggaaatcaa aaagaagatt agaaacgggg aactaaagcc
      901 aggcgatcgt ttaattgaaa atacattatc acaacaatta gaaattagtc gtacgccgat
      961 tcgaaaagca atcgggatgc ttgctgcaga tggatatgtg gaatacaacg attttcgagg
     1021 tgcttttgtt cgggacagca ttattaataa agaacgttac tttgaaatga cagaaattat
     1081 tggtttgttt ctaaaacaag ctatccaaaa aatccgtaca aaaaaaatag ccttcaataa
     1141 aatgcgagtt gttgcaaaat tagtcgaaat tgaacgcgaa caaccaaccg acccagcaac
     1201 ttatttcgaa tatgaaaaat ggtttgtgag tgatttacta acctatatga aaaataatta
     1261 ctatttgaaa attagcgatg atttttttaa taatattcaa gaatttggtg atgaagaagt
     1321 cattaagatt gcacaaaacg cttgtgttaa aacaatcgct aacatccaac gttttattga
     1381 tgcgttggat gtacaagatt atgacaagtg catagcgatt attgatcaag tcattgatgc
     1441 ccatgtttta gtcgcttatc gttaaaaaag cattgtcctt actacttaag gacaatgctt
     1501 tttatttatt ttattttcac taaatatcta ccagtcacgc caccgttcat tacttggtga
     1561 agagcttcag gtaactcaga aaagcccact tctgttacta agctttctaa attagttaat
     1621 ttgaaatctg tcgcaagtct attccaaatt cgttctcgtt ttggcatcgg acataaaact
     1681 gaatcaatac cgaataattg aataccacgc aaaataaatg gaaagacagt tgtatctaat
     1741 tttccaccag cagacatacc gcatgtagta actgccccgc catattgaac agctgttagg
     1801 aggtatgaaa gaggttttcc accaacacag tcaatggccc cggcgtatag ttgtttgtct
     1861 aatgcgcgca ctttttcagg ttgaaaagct tctcttaaaa ctatttcaga tacaccgaat
     1921 ttttctagga attcctttgc atcgcttttt ccagaagaag ctacaacaga gaagcctcgt
     1981 ttggaaagta tggctgagct taaactacct acaccgcctg ttgcaccact tacagcgatt
     2041 tttccagcat cgggtgttac gccactaaat tcaagcgcat cgaccgagag tgctgctgta
     2101 aagcccgctg tgcctagtat catcgcttct tttaatgata gaccatctgg caaaggaaca
     2161 acccaagcag ctggaacgcg aataaactca ctatatccac caaaatagct cactccaaaa
     2221 tcataactag tgacaataac ctcatcgcct acttgaaatt ggtcagattt agaatggacg
     2281 accacaccac ttgcatcaat accaggaata aaaggatact cgctcacaat tttcccgtct
     2341 ggaagtacag ccagtccatc tttgtagtta ataccagaat aatgtacctc aatcgttact
     2401 tcattttctg gcaagttatc tatagtagtt tctctaaaat gaagggaagt attatctgct
     2461 tctttttcaa tgaaaagtgc ttgaaatgat ttcatttttt aaattcctcc acaactcaat
     2521 tttgtgttcc ccttcacttt acgacttttt tcgccatttt acaaggctgt gactggtaca
     2581 aatccccatt tcaaggtaaa ctagaataga gaagatgccg atattttgtg taaatttata
     2641 aatagaattt tttggcaaga aagggtgagt gcgatgggga aggcactatt gattgtgaat
     2701 ccatcatcag gtaaagaaaa aggaaaaact tatcaaggaa agacagaaga agtactaaaa
     2761 aaacgttatg atgaggtgga agttcgcctg actgaaaaag caggggatgc aacagaattt
     2821 gcttcctggg ctgctgaaca aggctttgaa gcagtaattg cgatgggcgg agacgggact
     2881 ttaaatgaaa ccataaacgg acttgcaatc catgaaaaac gacctgactt tggcttcatt
     2941 ccacttggaa cagtcaatga tttggctcgt tcggtaggta taccattaaa acccgaaaaa
     3001 gcgattcaag cattagaaaa agctattgca gtgccgatgg atattggccg gattggcgac
     3061 caatacttta tgaacgtcct agctatcggt atgattgcgc aagctgtcga ccaagttagc
     3121 gtcgaacaaa aaaccaaatt tggctccgta gcatactttt tagagggcct gaaagcattt
     3181 aaccgcaatg aattacttca ttttaaaatc gaatatgacg aggaagtttg ggaaggggaa
     3241 gctgcgctag ttgtggctgg cttaactaat tcagttggtg ggatggaatc atgggcgcca
     3301 gatgcaaaaa ttgacgatgg ctacctgcat attattattc taacgaaact tggcttgctt
     3361 gatgcagcca atatgatccc gcaattaatt cgcggtaatt taaaaaacag tgacggtgta
     3421 gtttatatta aaaccaagaa acttaccatt gatgcaagtg gagacgattt aagcatcaac
     3481 gtcgatggcg acccaggtcc aggtgtacca gcagaaatcg aagtgcttgg cagtcacttg
     3541 aatatccttg cacccaaaaa aagcagcaag aagcgcttcg gcccattcat acttaaaaag
     3601 taacctacaa taattgtaga agaataagga gatgaaagct ttatggaaga agaattagaa
     3661 gtcattcata aaggtcttgc caatgcgaaa aatggtttta aagcagtccc cggaaaactt
     3721 tatttaacag caacgtatat tgtccacaaa ccaaatgatt actttgacga agaaatcaat
     3781 attccgctga atcgagtagc aaaaattcgg ggtgtccgca ccaaaatcct tggaaaagaa
     3841 ttactctcca acattttaga aatagacatg atatccggag taaagtacca attcgttgta
     3901 aacaaacaga aaaagtggct ggaagcagtt tctgaagtat tagaaagccg cggtgaatca
     3961 gaaaaattag gatagaaaga agctggcacg aaaaaagtga ccagcttctt ttttatgcta
     4021 aatgaaatgc agttgcacca atgagattgg catcatttcc aaagtgacag ccaacaacag
     4081 tagggctaat agtcgcaatt ggtacagacg cttttacttt cgccacatat tcggtcaact
     4141 cttgaataaa atcagcccgc tcacttacac caccaccaat gacgactagt tcaggatcaa
     4201 gtgcgtactg caaattaaat atacttctcg caagataata aaacatcgta tctagctctt
     4261 cttttgcgat tttatttcct tccgcacgta attcaaatgc ccgaagaccg tctatactag
     4321 cttttggaac ttctaaacgc tcggctattc tcgtcgcagc atttacgact gtaccaagct
     4381 cgctaagtgt gcgtccgtcg cggtccatca acatataacc aaattcacca ccatgcaaat
     4441 tggccccgtg atgtaccttg ccaccgcgaa taactgcgcc accaactcca cttccaagaa
     4501 tcataaaaat aatatcttgc ttgtctttcg ccgcgccaat ccaaacctct gctaaagctg
     4561 cacagttggc gtcattttcc atcgtaacag gaagccccag tttttcttca agtaattgtt
     4621 taaaagggaa attatgtatg taggggatgg cactcgcgcc gccaatgata ccggtttcat
     4681 tattaaccgc acctggacaa ctaaacgcag ctccttggaa tgtataatcg taatttgctt
     4741 ttacatccat aagcgattgc agcatttcat ccaaattatc cggggttttg aatttacctt
     4801 tttctagaat ttctccagct gttgttaaca cgccaaactt cactgctgtt ccacctaaat
     4861 caaatgcaag tatcgtcatt acccaatctc ctttttaata gaaaagtata tacttatcat
     4921 acttttaaac aatacaaatg acaaataaaa agtgaaaata ctttgctaaa aattaacgtc
     4981 cttttctatt ttgtgctata ataaagcaag aatttgaagc gcaggaggaa atggttagtg
     5041 gagataaagg ttcaaaagaa attgactgac ggcagaatcg cttttagtag tgaatatggt
     5101 gaatgcgttg gtatatgggc cgatgaagac ccagaaccaa gtagggttta cacagtagaa
     5161 attacaatac cggacatgat tagcgcagaa ctgctacacg agagtgaaga gaaacattgt
     5221 gcattagaaa tagacgaaga aggcttagtt cacgtaattg ggaagttaga ggattacgag
     5281 gaagatggct ttgcagtgct ccgcttagaa gaaagtatta tttgttttga cacgaaattc
     5341 agtgaagaaa tcgaaatgct ccatggaaga tttgttgaat ttgttattcc ggaaataaaa
     5401 ttaagtaatg ttggtatata gattgaaatg aaagaggcag gaaacagata gtgagagttt
     5461 cctgtctttt ttttgttatt tggaaggagt gcttgaataa ttattcattc gtgaattata
     5521 attaatgtga aataataaaa caaataggta gtaattagcg gttaaatagt tattttatag
     5581 tagtaaatac gaattttttg tgacgaagaa aaattgattg cataaaaagt gaatagtgct
     5641 tcatattgtg taagatttta ttattg
//
LOCUS       DASEAA010000170         5624 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.170, whole genome shotgun sequence.
ACCESSION   DASEAA010000170 DASEAA010000000
VERSION     DASEAA010000170.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5624)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5624)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5624
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.170"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..238
                     /locus_tag="U0342_002466"
     CDS             <1..238
                     /locus_tag="U0342_002466"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465558.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="cell division protein FtsQ/DivIB"
                     /protein_id="HEM2423797.1"
                     /translation="TDKNHIKLYMNDGNQVSADISTFAEKMQHYPAIVAQLAKGQKGV
                     IDIEVGSYFQSYYQQNAEKKAAEEAAKEKKETNE"
     gene            603..1883
                     /gene="ftsA"
                     /locus_tag="U0342_002467"
     CDS             603..1883
                     /gene="ftsA"
                     /locus_tag="U0342_002467"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465557.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsA"
                     /protein_id="HEM2423798.1"
                     /translation="MGDSEIYVSLDIGTASVKVIIAEMADDRLNIIGVGNVESSGIKK
                     GIIIDIDKTVESIKKAIEQAERMVGVEISQVIVGVVSSQVHLEACRGIVAVGSENREI
                     TDEDVWNVMDAAQVVPLSPEREIINTIPDQFVVDGLTGITDPRGMIGVRLEMEGTLIT
                     GSKTILHNTLRCVERAGLEISDIALQPLAEASISLSEDDKEFGTALVNVGAGTTTVSV
                     FEQGRLTYTGVIPVGGDNITKDLSLGLNTSTANADRVKLDHGYAFYDDASPDEVFAID
                     VIGSDQKQHFTQVEVADIIEARMEEIFQLVVEELTRVGKTHLPGGYVLTGGSMAIPGA
                     IDLAGKTLAAHVRLAIPDYIGVREPSFTTAVGLIKYAYQMAELEGRDVSSSASEPRYD
                     DEAPKQKQPKPKQKKSDDEKVSTKMKNFFGAFFE"
     gene            1950..3125
                     /gene="ftsZ"
                     /locus_tag="U0342_002468"
     CDS             1950..3125
                     /gene="ftsZ"
                     /locus_tag="U0342_002468"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465556.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein FtsZ"
                     /protein_id="HEM2423799.1"
                     /translation="MLEFDTSSESLATIKVIGVGGGGNNAVNRMIEHGVQGVEFISVN
                     TDAQALNLAKAETKLQIGTKLTRGLGAGAVPEIGKKAAEESREQIEEALKGSDMVFVT
                     AGMGGGTGTGAAPVIAQIAKEMGALTVGVVTRPFGFEGPKRTKQALTGTEAMKEAVDT
                     LIVIPNDRLLQIVDKNTPMLEAFREADNVLRQGVQGISDLIAVPGLINLDFADVKTIM
                     TNRGSALMGIGIATGENRAAEAAKKAISSPLLETSVDGAKGVLMNITGGSNLSLYEVQ
                     EAAEIVSSASDEDVNMIFGSVINDELKDELIVTVIATGFDEEKQAQQQAQANRRPNQS
                     IQVNRPNYAVQDEQQNDYAQNAPQQANAPVHEQQAEPQQNSSDVDVPAFIRNRNRRG"
     gene            3244..3933
                     /locus_tag="U0342_002469"
     CDS             3244..3933
                     /locus_tag="U0342_002469"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465555.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggS family pyridoxal phosphate-dependent
                     enzyme"
                     /protein_id="HEM2423800.1"
                     /translation="MTKQANLQKVTAQIERACEESNRQPEDVTLVAVTKTIDVAGITE
                     LYDLGIRHFGENRADVFQEKTVALADKEDICWHYIGSLQTRKVKDVLPKIDYLHSLDR
                     SSLAKEIEKRATKPVKCFLQVNISGEESKHGFSKEEALSFLQEANFTFIEIVGLMTMA
                     PITNSDIELHHVFHELKQLQQEIHALQLNNIPCTELSMGMTNDYGVAITEGATFIRVG
                     RALVSDDNMEV"
     gene            3937..4395
                     /locus_tag="U0342_002470"
     CDS             3937..4395
                     /locus_tag="U0342_002470"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell division protein SepF"
                     /protein_id="HEM2423801.1"
                     /translation="MGLSNKFKSFFFLDEEEEYYEEEVAREPEPMQKKTKKEKPNKNR
                     FYAVEEDDAKVVSMQGAQFSSRMVLAEPRVYAEAQELADYLKEYKSVVVNLQRISHDQ
                     ATRIVDFLSGTVYALGGDIQRVGNNIFLCTPDNVEVDGSISEMLDEQNFM"
     gene            4418..4708
                     /locus_tag="U0342_002471"
     CDS             4418..4708
                     /locus_tag="U0342_002471"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YggT family protein"
                     /protein_id="HEM2423802.1"
                     /translation="MQSILYQVVEIILFIIRWLPTLMFIYFLMSWFPGARESKIGQFL
                     ARIFEPILEPFRRIIPPIGMFDISSLVAYFIFQYAMRVLTGLIQVYVIPMLF"
     gene            4833..5609
                     /locus_tag="U0342_002472"
     CDS             4833..5609
                     /locus_tag="U0342_002472"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-binding protein"
                     /protein_id="HEM2423803.1"
                     /translation="MDGIYQHFRAEEYAFIDKILGITMQVENEYTPQLTDFLDPRQRF
                     ITETVIGGYDEINVQFFGGVAHAERRRALIYPDYYTPTEADFEIALFHIRYPVKFTTL
                     THQKILGTLMSLGMKRDIFGDILNNGTEWQLLVESTMKDYLTLQLEKIGKVNVMLEET
                     DLANAVYAPVVWEEMGLTVSSMRLDVIISNAHHISRQKAKQLVTAGLVKVNWKTVENP
                     DFECEEEDVLSARGYGRVKVLSTGGRTKKDKIRIEIGYLK"
BASE COUNT         1905 a          905 c         1235 g         1579 t
ORIGIN      
        1 aactgataaa aaccatatta aattatatat gaacgacggg aatcaggttt ccgcagatat
       61 tagtactttc gctgagaaaa tgcaacatta tccagccatt gtcgctcaac ttgctaaagg
      121 acaaaaagga gttattgata ttgaagtagg ttcttatttc caaagttatt accaacagaa
      181 tgccgagaaa aaggcagccg aagaagcagc taaagagaag aaagaaacaa atgaataata
      241 tttttttctt ctcgccaatt tttggcaaat ttatagataa cagatgtttc aaaaaggtaa
      301 caaaacgatg acctcaagtc aggagatgcc aacacttgtt cgctttttga ataaaatgaa
      361 aaaaatatct taagaatttg ccaaaaaatg ttctttgtgc ttttattacc ttctttctta
      421 gtgtagactg taaataagtg attttgtatg ttaggcagaa tgggcaatca ttctacactg
      481 acgccataaa aataaagaaa tttcatagct tttcaagaaa gttaaaaaac cggcttttgc
      541 tcggtataaa aaaatgaaat aaatacatgt taaatgacta gaataaaagg aggtgccgat
      601 aaatgggtga tagcgaaatt tatgtaagtt tagacattgg aacagcttct gtgaaagtaa
      661 tcatcgcaga aatggctgac gatagactca atattatcgg tgttgggaat gtcgaatctt
      721 ccgggattaa aaaaggaatt attatcgaca tagacaagac tgtagaatcc attaaaaagg
      781 caattgaaca agcagaaaga atggttggcg ttgaaatttc tcaagtaata gttggggtag
      841 tatcgagtca agtgcattta gaagcttgcc gaggaattgt ggcagtaggt agcgaaaatc
      901 gtgaaattac agatgaagat gtctggaatg taatggatgc cgctcaagtt gttcctctat
      961 ctcctgaaag agaaattatt aacactattc cagatcaatt tgttgtagat ggattaactg
     1021 ggattacaga tccacgtgga atgattggtg ttcgtctaga aatggaaggc acattaatca
     1081 ctggttcaaa aacaatttta cataatacat tacgttgtgt ggaacgtgca ggccttgaaa
     1141 tttctgatat tgctttacaa ccacttgcag aggcatccat ttccttatca gaagatgata
     1201 aagaatttgg aacagcactc gtgaatgttg gagcaggaac tacaaccgtt agcgtgtttg
     1261 aacaaggacg actaacttat actggtgtca ttccagttgg tggagataat atcacgaaag
     1321 acttatcact tggactaaac acttctactg caaatgccga tcgcgttaaa ttggatcatg
     1381 gctatgcatt ttatgatgat gcttctccag atgaagtttt tgctattgat gttatcggta
     1441 gtgaccaaaa acaacatttt acacaagtag aagtagcaga tattatcgaa gcgcgtatgg
     1501 aagaaatttt ccaattagta gtggaagaac ttactcgtgt cggtaaaacg catcttccag
     1561 gaggttatgt actaactggt ggttcgatgg ctattccagg agcaattgat ttggctggaa
     1621 aaaccttagc agcgcatgtt agactagcga ttcctgatta tattggtgtt cgggaacctt
     1681 cctttacaac cgcagtaggc ttaattaaat atgcttatca aatggctgaa ttagaaggac
     1741 gcgacgtaag cagttcggca agcgaacctc gttacgacga tgaagcacca aaacaaaagc
     1801 aacctaaacc aaaacaaaag aaatcagatg acgaaaaagt atcaacgaaa atgaagaatt
     1861 ttttcggcgc attttttgaa taaaagcgaa tagctgatag tccagcaaga aaatcgtatc
     1921 gtataaatcg gcaaatagga ggcaataata tgttagaatt tgacactagt tcagaaagtt
     1981 tggcaacaat taaagtaatc ggtgttggcg gtggcggtaa caacgctgta aaccgtatga
     2041 ttgagcatgg tgttcaagga gtagaattta tctccgttaa tacagacgct caagcactta
     2101 acttagcaaa agcagaaaca aaattacaaa tcggtacaaa attaacacgt ggtttaggcg
     2161 cgggagctgt acctgaaatt ggtaaaaaag ctgcagaaga aagccgcgaa caaattgaag
     2221 aagctttaaa aggctctgat atggtattcg taactgctgg aatgggcggt ggaactggaa
     2281 ctggtgctgc acctgttatc gctcaaatcg caaaagaaat gggcgcccta actgtaggtg
     2341 ttgttactcg accatttggt tttgaaggac caaaacgtac gaaacaagcc ttaactggaa
     2401 cagaagcaat gaaagaagcg gtagatactt taattgttat tcctaacgac cgtctacttc
     2461 aaattgtgga taaaaacacg ccaatgcttg aagctttccg tgaagcagat aatgttttac
     2521 gtcaaggtgt acaaggtatt tctgatttga ttgccgttcc aggtttaatt aacttagact
     2581 ttgccgatgt gaaaacaatt atgactaatc gtggttctgc ccttatggga atcggtattg
     2641 caactggtga aaaccgtgct gctgaagctg cgaaaaaagc aatttcttct ccacttcttg
     2701 aaacttccgt tgacggagca aaaggtgtcc taatgaatat tacaggtgga tctaacctaa
     2761 gtctttatga agtacaagaa gcagcagaaa tcgtatcaag tgcatcagat gaagatgtaa
     2821 acatgatttt cggttctgtt attaacgacg aattaaaaga tgaactgatt gtaactgtta
     2881 ttgcaacagg ttttgatgaa gaaaagcaag cgcaacaaca agcgcaagca aatcgccgtc
     2941 caaatcaatc tatccaagta aatcgtccta attatgctgt acaagacgaa caacaaaatg
     3001 attacgcgca aaatgcgcca cagcaagcaa atgcaccagt tcatgaacaa caagctgaac
     3061 cacaacaaaa tagttcagat gttgatgtac cagcatttat ccgtaaccgt aaccgtcgcg
     3121 gataatactt ataacataat ttcacccggc cacttttgaa gcattgccaa gtgaccgggt
     3181 atctgattat aacaagaagc gttttaaata aagcacttcg ggaattatat aaggtgataa
     3241 aaaatgacaa aacaagctaa tttacaaaaa gtaacggcac aaatagagcg tgcctgtgaa
     3301 gaaagtaatc gtcagccgga agatgtaacg ttagtagctg ttacaaaaac gattgatgta
     3361 gctggaatca cagagcttta tgatttaggt atccgtcact ttggtgaaaa tcgtgcagac
     3421 gttttccaag aaaaaacagt agcacttgca gataaagaag acatttgttg gcattacatt
     3481 ggttctttac aaacacgtaa agtaaaagat gttttaccaa aaatcgatta tttgcattcg
     3541 cttgaccgat catcgctagc aaaggaaatc gaaaagcgag ctactaaacc agtgaaatgt
     3601 ttccttcaag tgaatatttc tggtgaggaa agcaaacatg gattttccaa agaagaggcg
     3661 ctatcttttt tacaagaagc gaattttacg ttcattgaga ttgttggttt aatgacaatg
     3721 gcacctatta caaatagcga catagagctg catcacgtat ttcatgagtt aaagcaattg
     3781 cagcaagaaa ttcacgcgct tcagttaaac aatattccat gtacagagtt atctatgggg
     3841 atgacgaatg attatggagt tgcaattacg gaaggtgcaa catttatacg agtaggaaga
     3901 gctttggtga gtgacgataa tatggaggtg taacaaatgg gactatcgaa taaatttaag
     3961 tcattctttt tcttagatga agaagaggaa tattatgaag aggaagtagc gagggaacca
     4021 gaacctatgc aaaagaaaac gaagaaagaa aaaccaaata aaaatcgttt ttatgctgta
     4081 gaagaagatg atgcgaaggt ggttagtatg cagggagctc agttttctag tcgtatggta
     4141 cttgctgaac cgcgtgtgta tgcagaggca caagaacttg cggattattt gaaagaatat
     4201 aaatctgttg ttgtaaactt gcaacgtatt agccatgatc aagcgacacg tattgtcgat
     4261 ttcttgagtg gaacagtata tgcattaggt ggagatattc aacgcgttgg caataatatt
     4321 ttcttatgta ctccagacaa tgtggaagtg gatggctcta tttccgaaat gctcgatgaa
     4381 caaaacttta tgtgatgaag tagaggtgtg agctagattg caaagtattt tatatcaagt
     4441 ggtggaaatc attttgttta ttatcagatg gttgccaaca ctcatgttta tttatttctt
     4501 gatgagctgg tttcccggtg caagagaatc aaaaatcggc caatttttag ctcgtatttt
     4561 tgaaccgatt ttagagcctt ttagaaggat tattccgccg attggtatgt ttgatatttc
     4621 gtcccttgtg gcttatttca ttttccaata cgcgatgaga gttttaaccg gtttaattca
     4681 agtgtatgtc attccaatgc tattttaaaa agcgcgcccg ttttcaaaat gggtggcttt
     4741 ttttattaat aagcaagatt agcctagtag cagctgtttt catggtataa tagggctaaa
     4801 gactcggaac ggattgaaag ggagaaatta ggatggatgg aatttatcag cattttcgcg
     4861 cggaagaata cgcatttatt gataagattt tagggattac gatgcaagtt gagaatgaat
     4921 acacgccaca acttacggat ttcttggatc cgaggcagcg ttttattacc gaaacagtta
     4981 tcggtggtta tgatgagatc aatgtacaat tttttggtgg agtggcgcac gcagaacgac
     5041 ggcgcgcact gatttatcca gattattata cgccgacaga agcggatttt gagattgctt
     5101 tgttccatat acgctacccg gtaaaattca cgaccctcac acatcaaaaa atccttggaa
     5161 cactgatgtc gcttggaatg aagcgtgata tttttggaga tattttaaat aatggcactg
     5221 aatggcagtt attagtagaa agtacaatga aggattattt aacattacaa ctagaaaaaa
     5281 tcgggaaagt aaatgtgatg ttagaggaaa cggatttagc taatgctgtt tatgccccgg
     5341 tcgtttggga agaaatgggc ttaactgttt ctagtatgcg acttgacgtg attattagta
     5401 atgcacatca tatttctaga cagaaggcga aacaattggt tactgcggga ctagtaaaag
     5461 tcaactggaa aacagtggaa aacccggatt ttgaatgtga agaagaagat gtattgtctg
     5521 ctcgcggata tggtcgggta aaagtactat caactggcgg cagaacgaaa aaagataaaa
     5581 ttaggattga aattggctat ttaaaataaa aacgaaagca gttg
//
LOCUS       DASEAA010000171         5563 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.171, whole genome shotgun sequence.
ACCESSION   DASEAA010000171 DASEAA010000000
VERSION     DASEAA010000171.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5563)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5563)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5563
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.171"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            98..1138
                     /locus_tag="U0342_002473"
     CDS             98..1138
                     /locus_tag="U0342_002473"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464086.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactonase family protein"
                     /protein_id="HEM2423804.1"
                     /translation="MSKNQATAYIGTYTKAESQGIYRLVIDKTTGEIKENKLAGKMDN
                     PTYLKISDDEKFVYSVAKDGDKGGVAAFSVEEDGSLTFIGQDVQTGNPPCYVDASHDG
                     SIVVSANYHLGTIVSYPTENGALKPSVSTIQHTGKSVHERQEKPHAHFAGFTPDQKYV
                     ITCDLGTDKVTTYSATAGKLEKVTELDVKPGSGPRNLVFHPNAKYVYIMTELTSEVIF
                     AEYDEATGALNVIQTIASLPEGFDKENKGSAIHISPDGRFLYVSNRGQDAIVSYAVAE
                     NGTLTLAATTPVEGVGPRDFDLSYTGEILVATNENSNNVTVFGVNKETGALTLLQKDV
                     KVPEPVCIKFVK"
     gene            complement(1180..1875)
                     /locus_tag="U0342_002474"
     CDS             complement(1180..1875)
                     /locus_tag="U0342_002474"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464085.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2423805.1"
                     /translation="MATGKLNVYLVRHGKTMFNTSRRVQGWSDTPLTNEGIEVAEFLG
                     RGLRETPFDAIYTSDRGRTIETAGIILRESKQTHLEINELRDFREFGFGKFEGEYEDI
                     MFGKVMEHLGFQSMEEAFEKFGDDGYQIISETVEKIDETGMSENWDEMVARLKNALDT
                     VSAENQVENANVLVVSHGMAINTIISFFDKSLINPDLANASVTRLAFENGKWTIETVN
                     DLSYIEAGKLVLV"
     gene            complement(1876..2583)
                     /locus_tag="U0342_002475"
     CDS             complement(1876..2583)
                     /locus_tag="U0342_002475"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2423806.1"
                     /translation="MESSSRVVIYLTRHGKTILNTLDRVQGWADSPLTEEGALVAHDL
                     GRGLKGTNFVAAYASDRGRAIETARIVMKESDNYHLKLEKLAEMREFGFGKFEGEYNQ
                     AVLKMVAKAHGFESIESYYDKTSENNSNIVIDTVHKMDETGMTENSAIFEERLTAGLD
                     TILADANKRGGGDVLVVAHGMVIHRIIEMIDPSKNLRIIENASVTKVIFEDGAYSIEE
                     PGNMFYVEAGKKAQGGV"
     gene            complement(2712..4190)
                     /locus_tag="U0342_002476"
     CDS             complement(2712..4190)
                     /locus_tag="U0342_002476"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464083.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide MFS transporter"
                     /protein_id="HEM2423807.1"
                     /translation="MSTKKEKTFFGHPRGLATLFNTEFWERFSYYGMRALLLYYMYTA
                     VADGGLGFSQSTATAIMSIYGSLVFMSGVIGGWFADRVLGARQTIFYGGVLIMVGHIV
                     LALPNGGAAALFGSMAFIILGTGLLKPNVSNVVGDLYPAGDNRRDAGFSIFYMGINLG
                     AFIAPPIVSAVSDNAGSFHAGFGVAAVGMAIALVVYVLTGKRYLKDAGKKAPNPLQKS
                     EAKSLIFKIIGIVLGIGLLIAVLTLITGSLTIDTIILAVTVMGVGVPLAYFIMMMTSK
                     KTEADEKSRLTAYIPLFLIAVLFWMIEEQGSSTLALFAAERTDLSIWGMNLNPANFQS
                     LNPVFVITLSPIFAWIWTKLGDRQPSTPRKFALGLFFAGLSFVVMMLPGILHGNTTTL
                     VSPLWLVLSFFICIFGEMFISPVGLSATTKLAPKAFASQTMSLWFLSDAMGQSFNAQL
                     TQLFNADTEIAYFGITGFVAIAFAVALFIFAPFLKKYMKGVH"
     gene            complement(4280..5461)
                     /locus_tag="U0342_002477"
     CDS             complement(4280..5461)
                     /locus_tag="U0342_002477"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464082.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron-containing alcohol dehydrogenase"
                     /protein_id="HEM2423808.1"
                     /translation="MQKEMLNFDYYNPTHIIFGKNRFNELNEVIPQDKKVLILYGGGS
                     VERFGTLDKVKTALKSREVGEFGGIEANPTYETLIKAIRLVKEENYDFLLAVGGGSVI
                     DGTKFVAAGALFDGEPMDIFGSGIGEKRPITKALPFGTVLTLPATGSEMNSGGVITFV
                     EKKAKLGFGSAYTYPVFSLLDPELTYTLPKRQLANGIMDAYVHVMEQYMTYPVGALLQ
                     DRYAESLLQTLIEIGPDVIKEDNHDYNTRATFMWSATNALNGTLSRGVPQDWASHSLG
                     HEITALYGIDHARTLAIVLPSLLNVRRSEKHEKLVQYAERVWGIKSGSDEEKIDAAIL
                     KTREFFESLGAGTRFSDYGLGEEVVDLLVDQLERHGLTNISERGDQTLEVSRQIYTNA
                     L"
BASE COUNT         1747 a         1229 c          918 g         1669 t
ORIGIN      
        1 atttgtaaca ttaatgcaat aatcgtgata tttttctatc ttttctttac tatgctatag
       61 ttaactagga aatatcttat atataggagg aattggcatg tcaaaaaatc aagcaactgc
      121 ttatatcggt acatatacca aagccgagag ccaaggtatc tatcgcttag taatcgacaa
      181 aactaccggc gaaatcaaag aaaataaatt agctgggaaa atggacaatc caacatatct
      241 taaaatttca gatgacgaaa aattcgttta ttctgtagca aaagatggcg ataaaggtgg
      301 ggttgcagct ttttctgtgg aagaagacgg ttcgcttact ttcatcggtc aagatgttca
      361 aacaggtaac ccaccatgtt acgtagatgc ctctcatgac ggttctatcg ttgtatctgc
      421 aaactatcac ttaggcacaa tcgtaagcta tccaacagaa aatggtgcat taaagccttc
      481 tgtttctacc attcaacata ctggtaaaag tgttcacgaa cgccaagaaa aaccacacgc
      541 gcactttgca ggattcacac cagaccaaaa atacgttatc acatgtgacc ttggaacaga
      601 caaagtaacg acttattccg ctactgctgg caaacttgaa aaagtaactg agctagacgt
      661 aaaacctgga agcggtcctc gtaacctagt cttccatcca aatgctaaat atgtgtacat
      721 catgacagaa ttaacttccg aagttatttt tgctgaatat gatgaagcta ctggcgcatt
      781 aaacgtgatt caaacaatcg cttctcttcc agaaggtttt gacaaagaaa ataaaggtag
      841 cgctatccat atttctcctg atggtcgttt cctatatgtg tcaaatcgtg gccaagatgc
      901 catcgttagt tatgcagttg ccgaaaacgg cacactaaca cttgcagcaa caacaccagt
      961 agaaggcgta ggtccacgtg acttcgacct gagctacact ggcgaaatct tagttgcaac
     1021 aaacgaaaac agcaataacg ttactgtttt tggtgttaac aaagaaactg gtgcacttac
     1081 attacttcaa aaagatgtaa aagttcctga accagtttgt attaaattcg taaaataact
     1141 taaaaaatcc agaatggcct cagtgccatt ctggattttt tatactaaaa ctaatttacc
     1201 tgcttcaatg taacttaaat cattcactgt ctcaattgtc catttgccat tttcaaatgc
     1261 aagtcttgta acacttgcat tagctaagtc tggattaatt aatgacttat caaagaaaga
     1321 aataatcgta ttaatagcca ttccgtgaga aacaactaaa acgttggcat tttccacctg
     1381 attttctgca ctaactgtat ctaaagcatt ttttaatcta gcaaccatct catcccaatt
     1441 ctcggacata ccagtttcat caattttttc tacagtttcc gagataattt gataaccatc
     1501 atcgccaaat ttttcaaaag cttcttccat cgactggaaa ccaagatgct ccatcacttt
     1561 tccaaacata atatcttcat actcaccttc aaatttacca aaaccaaact cacggaaatc
     1621 acgtagttca ttgatttcca aatgcgtctg cttgctttca cgtaaaatga tgcctgccgt
     1681 ttcaattgtt cgaccacgat cactcgtata aatagcatca aagggagttt cacgaaggcc
     1741 acgacctaaa aattctgcca cttcgattcc ttcatttgtt aatggtgtat ctgaccagcc
     1801 ttgcacacga cgagatgtat tgaacatcgt tttgccatgc ctaactaagt acacattcag
     1861 ttttcctgtt gccacttaaa ctcccccttg cgcctttttt ccagcttcta cataaaacat
     1921 gtttccaggt tcttcaatcg aatatgctcc atcttcaaaa ataacttttg tcacactggc
     1981 attttcgata attcgtaaat ttttactagg atcaatcatt tcaataatgc gatgaataac
     2041 cataccgtgc gctactacta acacatctcc accaccacgc ttattagcat cggcaagaat
     2101 agtatcgagt cccgcagtta gtctttcttc aaaaatagcc gagttttccg tcattccagt
     2161 ctcatccatt ttgtgcaccg tatcaatgac aatattggaa ttattttcag aagttttatc
     2221 ataatagctt tcaatagatt caaaaccatg cgcctttgct accattttta aaacagcttg
     2281 attatattcc ccttcaaatt tgccaaagcc aaattcacgc atttcagcta atttttctag
     2341 ttttaaatga tagttatcgc tttctttcat tacaattcgt gcagtttcga tggcacgtcc
     2401 tcggtcactt gcgtaagcgg ctacaaaatt agtccctttt aagccacgac ccaaatcatg
     2461 cgcaacaagt gctccttctt cagtaagcgg tgagtccgcc cagccctgca cccgatcaag
     2521 tgtgtttaaa atcgtctttc catgtcgcgt taaataaata actaccctgc ttgatgattc
     2581 catgtataca ctcctttaaa ttatcacttc tccctttaat agtagcaatc ttaggagtta
     2641 atggcaaact aatttattcc tagcataaaa aaacacttcc tccaaataag gagaaagtgc
     2701 gcttaattcc tttaatgaac gcccttcata tattttttca agaatggcgc gaaaatgaat
     2761 aatgctaccg caaaagcaat tgctacaaaa ccagtaatac cgaaataagc aatttcagtg
     2821 tcagcattaa ataattgtgt taattgtgcg ttaaatgatt gccccattgc atctgacaag
     2881 aaccataagc tcatcgtttg tgaagcaaaa gcttttggcg ctagtttggt agtcgcagat
     2941 aatccgactg gtgagataaa catttcaccg aaaatacaga tgaagaaact tagtactaac
     3001 caaagcggac ttacaagcgt tgttgtgttt ccgtgcaaga tacccggaag catcataaca
     3061 acgaaagata aaccagcgaa gaatagtcca agggcaaatt tacgtggtgt agatggttgt
     3121 ctatcaccaa gtttcgtcca aatccatgcg aaaattggcg aaagtgtaat aacaaacact
     3181 gggttaagcg actggaaatt ggctggattt aagttcatac cccaaataga taaatccgtt
     3241 ctttctgccg cgaaaagcgc caatgtggac gagccttgtt cttcaatcat ccaaaatagt
     3301 acagcaatta aaaataacgg tatgtatgca gttaatcgtg atttttcgtc cgcctcggtt
     3361 ttcttgctag tcatcatcat aataaagtaa gcgagtggaa cccccacgcc catcaccgtt
     3421 acagcaagga taatcgtatc aattgttaag ctacctgtaa ttagtgttaa aacagcaatt
     3481 aataatccta tgcctaaaac aatgccaatt attttgaata taagactttt tgcttctgat
     3541 ttttgaagcg gatttggcgc ttttttgcca gcgtctttta agtaacgttt tcctgtaaga
     3601 acataaacaa caagtgcaat tgccatacca acagctgcca caccaaaacc agcatggaaa
     3661 cttccagcat tatcagaaac tgccgaaaca ataggcgggg caataaatgc acctaagtta
     3721 atccccatgt agaagatact aaaaccagca tcacgacgat tatcgccagc tgggtataaa
     3781 tcgccaacga cattagaaac attcggttta agtagcccag ttccgagaat tataaatgcc
     3841 atcgaaccaa ataatgccgc tgctcctcca tttggtaaag ctagtacaat atgccccacc
     3901 ataataagga ctccaccgta aaaaatggtc tgtcgtgccc ccaagacacg gtcagcgaac
     3961 catccaccaa tgactcctga cataaatact agtgaaccat aaatagacat aattgctgtt
     4021 gcggtagact ggctaaaccc aagtccacca tctgctactg cagtatacat ataataaagt
     4081 aataatgcac gcattccgta ataggagaat cgctcccaaa attcggtgtt aaataatgta
     4141 gctaggccgc gcggatggcc gaaaaacgtc ttttccttct tggtactcaa gaaatttcgc
     4201 cctctttcat tttctattga tttttattta agtaagcaaa tttcttctct aatgatttgc
     4261 gcaaaagttt cgttatccat tataaagcat ttgtataaat ttgacgagat acttctagcg
     4321 tttggtcgcc gcgttctgaa atattcgtta aaccgtgacg ctctaattga tcaacgagta
     4381 agtccactac ttcctcgcca agcccataat cactaaatct agttcctgct cctaagcttt
     4441 caaagaactc gcgtgttttg agaatagcag cgtctatttt ttcttcatca ctaccactct
     4501 taatccccca cactcgttcc gcatattgca ctaatttctc atgcttttca ctgcgacgaa
     4561 catttaaaag agacgggaga actattgcta acgtacgtgc atggtcaatc ccataaagtg
     4621 cggtgatttc gtgacctaaa ctgtggcttg cccaatcttg cggaacgcct ctggataatg
     4681 ttccattgag tgcatttgta gctgaccaca taaaagtagc acgtgtatta taatcatgat
     4741 tatcttcttt gataacatct ggaccaattt cgattaaagt ttgtagtaga ctttcggcat
     4801 aacgatcttg cagcaaagca cctactggat aagtcatata ttgttccatt acatgcacat
     4861 acgcgtccat aataccattt gcaagttgac gttttggaag tgtgtatgta agttctggat
     4921 caagtaaaga aaaaacagga taagtataag cactaccaaa gccaagtttc gctttcttct
     4981 ccacaaaagt gattacacca ccgctattca tttcagaacc agttgcagga agtgttagta
     5041 ctgttccaaa aggaagcgct tttgtaatcg gacgtttttc gccaattccg ctaccaaaaa
     5101 tatccatcgg ttcaccgtcg aacaatgctc ccgctgcaac gaattttgtt ccgtcaatca
     5161 ctgaccctcc accgactgca agtaaaaagt catagttttc ttctttaact agtcggatag
     5221 ctttaattaa cgtttcgtat gtaggattcg cttcaatgcc accaaattcg cctacttcgc
     5281 gtgatttaag agcggttttt actttatcta aagttccaaa acgttctaca cttccaccac
     5341 catacaaaat caatactttt ttatcttgag gaatcacttc atttaattca ttaaaacggt
     5401 ttttaccaaa aataatatga gtagggttat aataatcaaa gttcaacatt tctttttgca
     5461 tgttaacgtc cttctttctg tttataaatt tacatagcat agttaataat acactttttt
     5521 tagaaaattt aaaccttatg ccaaaagttt ccatttatat aag
//
LOCUS       DASEAA010000172         5500 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.172, whole genome shotgun sequence.
ACCESSION   DASEAA010000172 DASEAA010000000
VERSION     DASEAA010000172.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5500)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5500)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5500
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.172"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            171..797
                     /gene="isdC"
                     /locus_tag="U0342_002478"
     CDS             171..797
                     /gene="isdC"
                     /locus_tag="U0342_002478"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465710.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme uptake protein IsdC"
                     /protein_id="HEM2423809.1"
                     /translation="MKKVLVLAAFIALFSFSFLSTGLTAQAALKDGTYSVDYTVLQGD
                     SDSVSMANDYFDKPATVTVNGGKSTVSLQVNHSKWITGLWVEGSAVSVTSKNTANDTR
                     KVSFPVSTLSSPVNAKIKVDIDDDDLNYHHEYQIKLRFDEGSAKALAGAVKSSDNNDT
                     ATPATKSDSSNKVANPKSSDSSQMFLYGIIFVAAGTGLVLLKRRAIFK"
     gene            810..2519
                     /gene="hbp2"
                     /locus_tag="U0342_002479"
     CDS             810..2519
                     /gene="hbp2"
                     /locus_tag="U0342_002479"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465709.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hemin/hemoglobin-binding protein Hbp2"
                     /protein_id="HEM2423810.1"
                     /translation="MKKLWKKGLVAFLALTLIFQLIPGFANAADSRLKDGGEYQVQVN
                     FYKDNTGKTTKESSEADKYIDHTATIKVENGQPYMYLTITNSTWWQTMAVSKNGARPE
                     KPAQADVYQDRYEDVQTVSTDAAKDTRVEKFKLSSLDDVIFSYMHIKVDAISYDHWYQ
                     VDLTIDPSTFKVISEPAITTPVTLSDGIYTIPFVAKKANDDSNSSMQNYFNNPAWLKV
                     KNGKKTVAMTVNDNKTVTALKTNLAGALQDVKVVSEDKDANTRIVEFEVEDLNQPLAA
                     HVNYEAPFNGSVYKGQADFRYVFDTTKATAASSYPGSDETPPVVDPGETKPPVTKPDP
                     GTTNPPVTTPPTTPSKPAVVDPKNLLNNHTYSIDFDVFKDGTTETSMMESYVMKPALI
                     KVENNQPYVYLTLTNSSWIKTFQYKANGVWKDMEVVSGDINKNTRTVKYPVKDGRANT
                     DVKTHVLIEDMPGFSYDHEYTVQVKLNAATIKDITGEDVTLKEPVKKDILNTGNVANN
                     NNAGPKLAKPDFDDTNSVQKTASSTEKNAKTNDSSSMAWYVTLFGASFLYLAYRLKRK
                     RLS"
     gene            2606..3478
                     /gene="isdE"
                     /locus_tag="U0342_002480"
     CDS             2606..3478
                     /gene="isdE"
                     /locus_tag="U0342_002480"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme ABC transporter substrate-binding protein
                     IsdE"
                     /protein_id="HEM2423811.1"
                     /translation="MRKMAVISLMLLLFLVGCGKEEAAQKPEQKSEKEPKIVATTVAI
                     TEIMDKLDLPLVGIPTSSKKLPERYADVKETGSPMGPDLEIIRMLKPDMVLSTKTLEA
                     DLKAGFEGADLKADFLDFTSIASMQTEIKKLGAEFDRKEEAAKLNGDLTNEIDKVKSS
                     VAKKKKPTVLILMGVPGSYLVVTEHAYIGDLVKLAGGENVIKDQKVEYLASNTEYLQS
                     ANPDIILRAAHGMPAEVVKMFDEEFKTNDIWKHFDAVKNNRVYDLDENLFGMTASLNA
                     PEALQEMEKMLYDN"
     gene            3468..4457
                     /locus_tag="U0342_002481"
     CDS             3468..4457
                     /locus_tag="U0342_002481"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465707.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="iron ABC transporter permease"
                     /protein_id="HEM2423812.1"
                     /translation="MTIKQKSSFGAVIILLIGTILWAVQAGSLSMSIPAFLSGVFSGG
                     NEMVNVVIDLRFPRIIIALLAGAALSVSGLLLQAVMRNPLADAGVIGISAGAKFFSFV
                     IILFLPELYFWLPLFSFIGGALAFFLVFLFSYRSDFNPLRFIIIGIAINAVFTGLSDA
                     LSSQVALVSSQSASSAASLAMKKWSDVETLLIYVTIGLICALLLAKWCNVLGLENKMA
                     RGFGVPVNKTRIWLALIAVLLASITTAVVGVIAFVGLLVPHIARKLVGGNYQILVPFS
                     ILFGALLLLFADTLGRTLFQQMEIPASVIMLIIGGPFLIFLMRKGDFYGSKGR"
     gene            4438..5217
                     /locus_tag="U0342_002482"
     CDS             4438..5217
                     /locus_tag="U0342_002482"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465706.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423813.1"
                     /translation="MEVRDVNFSYNGTESTLKNVSFTIQKNKINTIVGPNGSGKSTLL
                     EILARLLSPDSGDVLLEGKSIFEWKAKEFAQNVAIVHQNNVLPNELTVKELLYFGRLP
                     YKNWRMTRTKADDLAVEQALMQTELTEKAEKFVDSLSGGERQRVFIATALVQDTPILL
                     LDEPTTFLDMYFQLEILELVKRLNQEKNLTIVMILHDLNQALMYSDHLIVMKNGKVVA
                     KGVPGELLTTELIAETYGVVAKVLNDANTGKYIVPQKRKEF"
     gene            5221..>5500
                     /locus_tag="U0342_002483"
     CDS             5221..>5500
                     /locus_tag="U0342_002483"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465705.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SrtB family sortase"
                     /protein_id="HEM2423814.1"
                     /translation="MKIKSFLGKSLTLVVLVVFLFSGWKIGMELYENKHNQTILDDAK
                     AVYTKDVATTNVNGEVRDELRDLQKLNKDMVGWLTIADTEIDYPILQST"
BASE COUNT         1726 a          808 c         1269 g         1697 t
ORIGIN      
        1 tggttttttt gcgtttttaa tttgtgaaaa agcaatctgt tgttgacaat gataatcatt
       61 atcaattaaa atgataatta acgtatcctt ttacataaac ttttactcca cttttattag
      121 tgggggtttt ttataaatag tagtttttat taaagaaggg agatttaagt atgaagaaag
      181 ttttagtttt ggctgctttt attgccttat tcagtttttc gtttctttct acgggattaa
      241 cggcacaagc tgctcttaag gatggcacct attcggttga ttatacggta ctacaagggg
      301 atagtgattc cgtatctatg gcgaatgact attttgataa gcctgcaacg gtaactgtaa
      361 atggaggcaa atctactgtt agtttgcaag tgaaccatag taagtggatt actggtttat
      421 gggtcgaagg tagtgcggtt agcgtgactt cgaaaaatac agcgaatgat actcgaaaag
      481 tgtcgtttcc tgtgtcgact ttaagtagtc ctgttaatgc aaaaatcaaa gtagatattg
      541 atgatgacga tttaaattat catcatgagt atcaaatcaa gttacgtttt gatgaaggtt
      601 ctgctaaagc attagctggc gcggtaaagt cttctgataa taacgataca gcaaccccag
      661 caacaaaaag tgactcaagt aataaagtag caaatccgaa gtctagtgat tctagccaaa
      721 tgtttttata tggaattatt tttgttgcag cagggacagg gttagtttta cttaaaagac
      781 gtgcgatttt taaataaagg gggattatga tgaagaaatt atggaaaaaa ggtttagtag
      841 ctttcttggc tttgacactt atttttcaat tgatacctgg ttttgctaat gcggctgatt
      901 ctcgtctgaa agatggcggg gaataccaag ttcaagtgaa tttttataaa gataatacag
      961 ggaaaacaac gaaagaatct tcagaggcag ataaatatat tgaccataca gcaacgatta
     1021 aagtagaaaa tggtcaacct tatatgtact taacaattac aaatagtact tggtggcaaa
     1081 caatggcggt ttcaaaaaat ggggctcgtc cagaaaagcc agcacaagcg gatgtttatc
     1141 aagatcgtta tgaagatgtt caaacagtga gcacagacgc agcgaaagat acgcgtgtag
     1201 agaaattcaa gcttagttct ttagatgatg ttattttctc ttatatgcat attaaagtag
     1261 atgcaattag ttatgatcac tggtatcaag tggatttaac cattgatcca agtactttca
     1321 aagttatttc agaaccggct attacaacac ctgtgactct ttcggacgga atttacacga
     1381 ttccttttgt agcgaaaaaa gcaaatgatg atagcaactc aagcatgcaa aattatttta
     1441 ataatcctgc ttggctgaaa gtgaaaaatg ggaagaaaac tgttgcaatg acagtaaatg
     1501 ataataaaac agtaacagct ttaaaaacaa atcttgctgg agctttgcaa gatgtcaaag
     1561 tagtttctga agataaagat gcaaacacgc gtattgtgga atttgaagtg gaggatttaa
     1621 atcaaccact tgcggctcat gttaattatg aagcgccgtt caatggttct gtatacaaag
     1681 gacaagcaga cttccgttat gtgtttgata caacgaaagc aactgcggct agttcgtacc
     1741 ctggtagtga tgagacgcct cctgtagtag atccaggcga aacaaaacca ccagtaacaa
     1801 aacctgatcc aggtacaacg aatccaccag tgactacgcc gccaacaaca ccaagtaaac
     1861 cggcagtagt tgatcctaaa aatttactga ataaccatac gtactccatt gattttgatg
     1921 tatttaaaga cggaacaacg gaaacttcta tgatggaaag ctatgtgatg aaaccggctt
     1981 taatcaaagt agaaaataac caaccttatg tttatttaac tttaacaaac agtagctgga
     2041 ttaaaacttt ccagtataaa gcaaatggtg tttggaaaga tatggaagtt gtttccggag
     2101 atatcaacaa aaatacgaga accgtcaagt atcctgtaaa agatggcagg gctaatacag
     2161 atgtaaaaac gcatgtatta attgaagata tgccaggctt ctcttacgac catgagtata
     2221 cggttcaagt aaaacttaat gcagcaacaa ttaaagatat taccggggaa gatgtaacgt
     2281 taaaagaacc ggtgaaaaag gatattttaa atactggcaa tgtagcgaat aacaataatg
     2341 ctgggccaaa attggcaaaa cccgattttg atgacacaaa ttctgttcaa aaaacggcaa
     2401 gtagcacaga aaaaaatgcg aaaacgaatg attcatcaag tatggcatgg tacgttacgt
     2461 tatttggagc ttccttcctt tatttagctt atcgattaaa acgtaaaaga ttgagttaat
     2521 aaaactagta aaagcgagtt aggttggggg tttcctttgc ttaactcgct ttaccgattt
     2581 tattttataa atgggggaat tagtgatgag gaaaatggct gtcatatctt tgatgttatt
     2641 acttttttta gttggctgtg gaaaggaaga ggcggctcaa aagcctgaac aaaaatcgga
     2701 gaaggagcca aaaattgtgg cgactacggt agcgattacg gaaattatgg ataaacttga
     2761 tttgccactc gttggaattc cgactagttc taaaaaactt ccggagcgtt atgcagatgt
     2821 aaaggaaact gggtcgccta tggggcctga tttggaaatt attcggatgt tgaagccaga
     2881 catggtcctt tcaacgaaaa cgctagaagc ggacttaaag gctgggtttg aaggggccga
     2941 tttaaaagcg gactttctag actttacgag tattgcctcg atgcaaacag aaattaaaaa
     3001 acttggagca gaattcgatc gtaaagagga agcagctaaa ttaaatggtg atttaacgaa
     3061 tgagattgat aaggtgaagt cgagcgtggc gaaaaagaaa aagccaactg ttcttattct
     3121 gatgggggtt ccgggcagct acttagttgt aacggaacat gcgtatattg gtgatttggt
     3181 caaacttgct ggtggagaaa atgtcattaa ggaccaaaaa gtagaatatt tagcttctaa
     3241 tacagaatac ttacaaagtg ccaatcctga tattattttg cgggcggctc atggtatgcc
     3301 tgctgaagtg gttaaaatgt ttgacgagga atttaaaaca aatgatattt ggaaacattt
     3361 tgatgcggtg aaaaataatc gggtgtatga tttggatgaa aatttatttg gtatgacagc
     3421 gagtttgaat gcaccagaag cactacagga aatggaaaag atgctttatg acaattaagc
     3481 aaaaaagttc ttttggggct gtaattattt tattgattgg gactattttg tgggcagttc
     3541 aggcgggaag tttgtcgatg tcgattccag cttttttgag tggggttttt agtggcggaa
     3601 atgagatggt gaatgtcgtg attgatttgc gatttccgcg aattattatt gccctgctag
     3661 ctggtgcggc gctatcggtt tcagggttgt tacttcaagc tgtgatgcgg aatccgcttg
     3721 ctgatgctgg ggtgattggg atttctgcgg gtgcgaaatt ttttagtttt gtgattattt
     3781 tatttttacc ggaattatat ttttggttgc cacttttttc ttttattggg ggagcactgg
     3841 ctttttttct agtctttttg tttagttatc gttctgattt taatccgctt cgttttatta
     3901 ttattgggat tgcgattaat gcggttttta cagggctgag tgatgcgtta tcttcgcaag
     3961 tggcgcttgt ttctagtcag tcggccagta gtgctgcaag tttggcaatg aaaaaatggt
     4021 ccgacgtgga aactttattg atatatgtaa cgattggact gatttgcgcg cttttacttg
     4081 ctaaatggtg caatgtgttg gggcttgaga ataagatggc tagaggcttt ggtgtgccgg
     4141 ttaataagac acgtatttgg ctggcattga ttgctgtact ccttgcgtca attaccacgg
     4201 cggtagttgg tgttattgcg tttgttggtt tacttgtacc acatattgcc agaaaactag
     4261 ttggcggaaa ttatcaaata cttgtgccgt tttcaatatt atttggggct ttattgctac
     4321 ttttcgcgga tacgctaggc agaacgttat ttcagcaaat ggaaatcccg gcatctgtga
     4381 ttatgcttat tattggtggt ccattcttaa tctttttaat gcgaaagggt gatttttatg
     4441 gaagtaaggg acgttaattt tagttataat ggaacagagt ctaccttaaa aaatgtctca
     4501 tttacgatcc agaaaaataa aatcaatacg attgttgggc caaatggtag tgggaaatct
     4561 actttattag aaattttggc tagacttctt tcgcctgatt ctggggatgt tttactggaa
     4621 gggaaatcga tttttgaatg gaaagcaaaa gaatttgcgc aaaatgtagc gattgttcat
     4681 caaaataacg ttcttccgaa tgaactaacg gtgaaggaat tgctttactt tggtcgtcta
     4741 ccttataaaa attggcgaat gactcggacg aaggcggatg atctggctgt tgagcaggct
     4801 ttgatgcaaa cggagctaac tgaaaaagcg gagaaatttg ttgatagtct ttctggagga
     4861 gagcggcagc gtgtttttat agcaacagca ttggttcaag atacacctat tttgctgttg
     4921 gacgagccga cgacatttct ggacatgtat tttcaactag aaattttaga gttagtaaaa
     4981 cggttaaatc aagaaaaaaa tttgactatt gtaatgattt tgcatgactt aaaccaagcg
     5041 ttgatgtata gtgaccattt gattgtgatg aaaaatggga aagtggttgc aaaaggagta
     5101 ccaggagaat tactaacaac ggagctgatt gctgaaactt atggtgtagt tgcgaaggtt
     5161 ttaaacgatg cgaacactgg gaaatacatt gttcctcaaa agcgaaagga gttttaaaga
     5221 gtgaaaataa aatcgttttt ggggaaaagt ttgaccttgg ttgtgttagt ggtttttctt
     5281 ttttctggat ggaaaattgg aatggaactg tatgaaaata agcataacca gacaatccta
     5341 gatgatgcga aagctgttta cacaaaagat gttgctacta caaatgtgaa tggtgaagta
     5401 cgtgatgagc ttagagattt gcaaaaatta aataaagata tggttgggtg gctgacgatt
     5461 gcagatacgg aaatagatta tccaattttg caaagtacgg
//
LOCUS       DASEAA010000173         5495 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.173, whole genome shotgun sequence.
ACCESSION   DASEAA010000173 DASEAA010000000
VERSION     DASEAA010000173.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5495)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5495)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5495
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.173"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(16..1842)
                     /gene="lepA"
                     /locus_tag="U0342_002484"
     CDS             complement(16..1842)
                     /gene="lepA"
                     /locus_tag="U0342_002484"
                     /EC_number="3.6.5.n1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor 4"
                     /protein_id="HEM2423815.1"
                     /translation="MNKEEMNARQKKIRNFSIIAHIDHGKSTLADRILEQTGALTHRE
                     MKNQLLDSMDLERERGITIKLNAVQLKYKAKDGETYIFHLIDTPGHVDFTYEVSRSLA
                     ACEGAILVVDAAQGIEAQTLANVYLALDNDLEILPVINKIDLPAADPERVREEIEDVI
                     GLDASDAVLASAKSGIGIEDILEQIVEKVPEPSGDVNKPLKALIFDSVFDAYRGVIAN
                     IRIMDGVVKAGDRIKMMSNGKEFEVTEVGVFSPKATPRDELLVGDVGYLTAAIKNVGD
                     TRVGDTITLANNPAEEALDGYRKLNPMVYCGLYPIDSSKYNDLRDALEKLELNDSALQ
                     FEAETSQALGFGFRCGFLGLLHMEIIQERIEREFNIDLITTAPSVIYHVNLTDGSNIV
                     VDNPAEMPEPGVIESVEEPYVKATVMVPNDYVGAVMELAQNKRGNFITMEYLDDIRVS
                     IVYEIPLSEIVYDFFDQLKSSTKGYASFDYELIGYKASKLVKMDILLNAEKVDALSFI
                     VHRDFAYERGKIIVEKLKELIPRQQFEVPIQAAIATKIVSRSTIKALRKNVLAKCYGG
                     DVSRKRKLLEKQKEGKKRMKQIGSVEVPQEAFMAILKMDESK"
     gene            2087..2341
                     /locus_tag="U0342_002485"
     CDS             2087..2341
                     /locus_tag="U0342_002485"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465005.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S20"
                     /protein_id="HEM2423816.1"
                     /translation="MPNIKSAIKRVKTAETRNSRNASQRSAMRTAIKKFDEAAANNAD
                     NAKDLYVEASKKLDSAVSKGLIHKNNAARNKSRLAAKLAK"
     gene            complement(2427..3458)
                     /gene="holA"
                     /locus_tag="U0342_002486"
     CDS             complement(2427..3458)
                     /gene="holA"
                     /locus_tag="U0342_002486"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465006.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase III subunit delta"
                     /protein_id="HEM2423817.1"
                     /translation="MLPEWKQIRSKKIMPVYLIIGTEDYIINETKQLLIDNILEGEEV
                     EFNYANLDLEEMPIEVVIQEAESMPFFGDKRLVMANNPLFLTTEKSKNKVEHDTAKLE
                     AYLNEPVDYSVLCFVARVEKLDERKKLTKLLKKTATVIEAKRPNENELKKWIEAKLSE
                     NNMQMSQEAITRLVELTSGQLTTAMNELQKLMLYCFDSKEITIQDVESLVVRSLEQNI
                     FLLLDKMIAMDISGALRIYYDLLKQKEEPIKILALISSQFRLLNQLKLLEQQGYSQQQ
                     AATKLKVHPFRVKLASKQAKNFTELQLNQALKRLAEIDLEMKTGFGDKEQKLEWFLFE
                     LQDNRQKRV"
     gene            complement(3526..>5495)
                     /locus_tag="U0342_002487"
     CDS             complement(3526..>5495)
                     /locus_tag="U0342_002487"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA internalization-related competence protein
                     ComEC/Rec2"
                     /protein_id="HEM2423818.1"
                     /translation="VRCEKEKFQLSYKITTEEEQQKLKKLHYGQFISVSANIETPSVN
                     RNQNQFNYQTYLKNQNVHYILRASNLAISSQFSPSFLMKLQNIRLKIITHLTEKISPT
                     ISPYCLALISGEKNGFSPEMYEVYQQMGVVHLLAISGLHVNLLIGAIYFLLLKFGITR
                     DRAITCLLVFLPFYVILTGANPPVIRAATMTALLLLSEKYTTKWSSFSAICLSFILFF
                     LLQPYIIREVGFQLSYAVSFGIILSSRQILTRQQNAFTKSLAISFISTIMSSAVMMYH
                     FYSFSWVGIFFNLIYVPIFTMIILPGCLTVFVLSFFSTEIFHFPEAMLTFFIQLVEKL
                     TYIFAKIPHQTIVTGRPNTVILVLTIITIIIVFSQWQKKKFPLGIFICFCLLCYLASF
                     NFSGKVSFIDVGQGDSILIQLPYNQGNYLIDTGGQLPFEKEAWAKKRKPFTIGGSTLS
                     PVLKSKGINSLDKVIITHSDADHMEGLDDLQKNITIKELIFAKGAENKPIMKEALAAM
                     PKVKQTIILAGAKWQIGENSFECLYPDKAGEGGNDDSIVLKAVLDGKIWLFTGDLEAN
                     GEKGISEQPIKADILKVGHHGSKTSSSKEFIQKVKPTFAVISCGLNNRFGHPHAETIN
                     TLEKAGVTILRTDVQGEITYTFGKGFEATLK"
BASE COUNT         1667 a         1035 c          915 g         1878 t
ORIGIN      
        1 agcacaactt ttttattatt tggattcgtc cattttcaag attgccataa atgcttcttg
       61 cgggacttca actgaaccga tttgtttcat tcgtttttta ccttcttttt gtttctctaa
      121 aagttttcgt ttacgagata cgtccccacc gtaacattta gcaagtacgt tttttcgcaa
      181 cgctttaata gtagaacgag aaacaatttt tgtggcaatt gctgcttgaa taggtacttc
      241 aaattgttgt cttggaataa gttcttttaa tttctccacg atgatttttc cacgctcata
      301 agcaaaatca cggtgaacga taaagctaag tgcatcaact ttttctgcat ttaaaagaat
      361 atccattttc acaagtttag aagctttata gccaattaat tcataatcaa aggacgcata
      421 accttttgta gatgatttta attggtcaaa aaagtcatat acgatttcgg ataatggaat
      481 ttcgtacaca atacttacgc gaatatcatc taagtactcc atcgtaatga agtttccacg
      541 tttgttttgt gccagttcca tcactgcacc aacataatca tttggaacca tcacagttgc
      601 ttttacatat ggctcttcca cgctttcaat aacaccaggt tctggcattt cagcaggatt
      661 atcaaccaca atgttagaac catctgtcaa gttgacatga tagataacac ttggagcagt
      721 ggtaattaaa tcaatgttaa attcacgttc gattcgctct tgaataattt ccatatgtag
      781 taatcctaag aaaccacaac ggaaaccaaa acctaatgct tgagaagttt ccgcttcaaa
      841 ttgcaaagca gagtcattta attctagttt ttctaaagca tcacgaagat cattatattt
      901 agaggagtcg attggatata gaccacaata aaccattgga tttaatttac ggtaaccatc
      961 cagcgcttct tcagctggat tattcgcaag tgtgattgta tcacctacgc gcgtatctcc
     1021 aacatttttt atagctgctg ttaagtaacc aacgtcacca acaagtaatt cgtcacgtgg
     1081 tgttgccttt ggtgagaata caccaacctc cgttacttcg aattctttgc cattggacat
     1141 cattttaatt cggtcgcctg cttttacaac accatccatg atacggatat tagcaataac
     1201 accacgatat gcatcaaaaa cagagtcaaa aatgagcgct tttagtggtt tatttacatc
     1261 accagatggc tcaggaactt tttcgacaat ttgttctaga atgtcttcaa taccaatacc
     1321 agatttcgca gaagcaagta cagcgtcaga agcatctaaa ccaattacat cttcaatttc
     1381 ttcgcggact ctttccggat cggccgctgg taaatcgatt ttgttaatga ctggtaaaat
     1441 ttctaaatcg ttgtctagtg ctaaataaac attagcaagg gtttgtgctt caattccttg
     1501 cgcagcatct acaacaagga ttgctccctc acatgcagct aaacttcttg atacttcata
     1561 ggtgaaatcg acatgcccag gcgtatcaat cagatggaag atatatgttt ctccatcttt
     1621 tgctttatat tttaattgta cagcatttaa ttttatggtt atcccgcgtt cacgttctaa
     1681 atccatcgaa tctagtagct gatttttcat ttcacgatgc gtcaaagcac ccgtttgttc
     1741 taaaatccga tcagcgagtg tagatttacc atgatctatg tgcgcgataa tcgaaaagtt
     1801 tctaattttc ttttgtcttg cattcatttc ttctttgttc atttccccag ctcctgatta
     1861 gaactcatcg cataaatccg atggcaagct atccttgatt atatcagtag aacgcttaac
     1921 attcaatgac ttctttatta attacgtata aatttaaaat aaaatagaaa gtattattgc
     1981 aatatggctg tgatttcggt ataatagcat ttgttctgat ataatttaaa aaggtatgtt
     2041 atatgaaata aatactacct cattagtttg gacggaggtg aatggaatgc caaatattaa
     2101 atctgcaatt aaacgtgtaa aaactgctga aactcgcaac agccgtaatg catctcaacg
     2161 ttctgcaatg cgtactgcta tcaaaaaatt tgacgaagca gctgcaaaca acgcggacaa
     2221 cgcgaaagat ctttacgtag aagcatcgaa aaaattagat agcgctgtga gcaaaggatt
     2281 gattcacaaa aacaatgctg ctcgcaacaa atctcgctta gctgctaaat tagctaaata
     2341 ataccgagtt cggtataaaa catcacacct tgtgtggtgt tttttgtttg caaaaatagc
     2401 tttgtcttaa atgacaaagc tattttttat actctctttt gccgattatc ttgtaattcg
     2461 aataagaacc attcgagttt ctgttcttta tcaccaaagc cagttttcat ttccaagtcg
     2521 atttcagcta atcgttttaa agcttgattt aattgtaatt ccgtgaaatt cttcgcttgt
     2581 tttgatgcta acttaacgcg gaatggatgc acttttagtt tagtcgcagc ttgttgttgc
     2641 gaataacctt gttgttctaa tagctttaat tggtttaaca acctgaattg actagaaatt
     2701 aatgccagta tcttgatagg ctcttctttt tgttttaata agtcgtaata aatccgaagt
     2761 gccccgctga tatccatagc aatcatctta tcaagtaaca aaaagatatt ttgttcaagt
     2821 gaacgtacaa ctaaagattc tacatcctga atggtaattt cttttgaatc aaaacaatag
     2881 agcattaatt tttgcagttc attcatggca gttgttagct gaccactagt taattccacc
     2941 agtcgagtaa tagcctcttg tgacatttgc atgttgttct cgcttaattt tgcttcaatc
     3001 cattttttca actcattctc attaggtcgt tttgcctcta taacagtagc tgttttcttg
     3061 agtaacttag taagcttttt acgctcatct aacttttcta cgcgcgctac aaagcataat
     3121 acggaataat ccactggttc attgagataa gcctctaatt ttgcagtatc atgctccact
     3181 ttgtttttac ttttttcagt tgttaaaaaa agcggattat tggccattac taaacgttta
     3241 tcaccgaaaa aaggcatgct ttctgcttct tgaatgacca cttctattgg catttcttct
     3301 aaatctaaat tagcgtagtt aaattctact tcttcgcctt ccaaaatgtt atctattaaa
     3361 agttgcttcg tttcgttaat aatataatct tccgtaccaa tgattaaata caccggcatt
     3421 atttttttgg agcgtatctg tttccattct ggcagcattc atttcgcctc gcttcactct
     3481 tatttctctt tctatggtaa aacatgaaat aagagatagc aagttttatt tcaaagtcgc
     3541 ttcaaagcct tttccaaatg tataagttat ttccccttgt acatctgttc gtaaaattgt
     3601 tactcctgcc ttttctagcg tattaatagt ttctgcgtgt ggatgaccaa agcgattgtt
     3661 taacccgcat gaaataactg caaaagtcgg cttcactttt tgaataaatt ctttggaact
     3721 ggaggtcttg ctaccatgat gccctacttt caaaatatct gctttgatag gctgttctga
     3781 tatgcccttt tctccgttcg cctctaaatc accagtaaaa agccatattt taccatctaa
     3841 tactgccttt aatacaatag agtcatcatt tcctccttct cctgctttat cgggatataa
     3901 gcattcgaaa ctgttttcgc caatttgcca cttggcaccg gccaaaataa ttgtctgttt
     3961 cacttttggc atcgcagcga gagcttcttt catgatgggt ttgttttctg ctcctttagc
     4021 aaaaataagc tctttaatag taatgttttt ctgtaaatca tcaagtcctt ccatgtggtc
     4081 agcatcgcta tgtgtaataa ttactttatc taagctatta attccttttg attttaacac
     4141 tgggctaagt gtacttccgc ctattgtaaa tggttttctt ttcttagccc atgcttcttt
     4201 ttcaaatgga agttggcctc cagtatctat taaataattc ccttgattgt atggtagttg
     4261 aattaaaatg ctatcccctt gccccacatc gataaaacta acttttccac taaaattaaa
     4321 actagctaaa taacataata aacaaaaaca aatgaatatc cctaaaggaa actttttctt
     4381 ttgccactgg ctgaagacga tgatgatagt tataatggtt agcactaata taacggtgtt
     4441 tggcctccct gttacaatag tctgatgcgg aatcttggcg aaaatgtagg ttaatttttc
     4501 taccaattgt ataaagaatg taagcattgc ttcaggaaaa tgaaatattt ctgttgaaaa
     4561 aaaagacagc acaaacacag ttagacaacc tggcaaaata atcatcgtaa aaatgggcac
     4621 ataaattaaa ttaaagaata tccctaccca tgaaaatgag taaaaatgat acatcatgac
     4681 agctgaagac atgatggttg aaatgaagga aatagcaagt gacttagtaa atgcgttctg
     4741 ctgtctggtt agtatttgtc ttgacgataa aataattcca aacgatactg cataagatag
     4801 ttgaaaacct acttctctaa tgatatacgg ttgcaagagg aaaaacagaa taaaggacaa
     4861 acaaatggca gaaaacgaac tccatttagt agtatatttt tctgacaata aaagtaatgc
     4921 tgtcattgta gcagctcgta tgactggcgg atttgctcct gtaaggataa cgtaaaatgg
     4981 taagaaaaca agtagacaag tgatggctct atcccttgta ataccgaatt ttagtaggag
     5041 aaaatatatt gcccctatta ataaattcac gtgaagtcca gagatagcta gcaaatggac
     5101 aacacccatt tgttgataaa cttcatacat ttcgggggaa aagccgtttt tctctccact
     5161 aattaatgcg agacaataag gagaaatggt tggagatatt ttttcggtta aatgggtaat
     5221 tattttcaaa cgtatatttt gaagtttcat taggaaagat ggtgagaatt gactggaaat
     5281 agcaagatta cttgctcgaa gtatatagtg tacattttgg ttctttaaat aagtttggta
     5341 attgaattga ttttgattgc ggttgacgga aggtgtttct atatttgcag aaacagaaat
     5401 aaactgtccg taatggagct tttttagttt ttgttgttcc tcttccgttg taattttata
     5461 actcaattga aatttttctt tttcgcagcg tacaa
//
LOCUS       DASEAA010000174         5470 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.174, whole genome shotgun sequence.
ACCESSION   DASEAA010000174 DASEAA010000000
VERSION     DASEAA010000174.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5470
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.174"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..284
                     /locus_tag="U0342_002488"
     CDS             <1..284
                     /locus_tag="U0342_002488"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA-binding protein"
                     /protein_id="HEM2423819.1"
                     /translation="TNIVYTAWENTRQIQMESGQLYNQFLPDIREKVVNHVMGIVPIV
                     ARLIRNPETGQRGFLLTENNGNFAKNQLDNREFALQEDLFQIGDVDVKA"
     gene            348..1604
                     /locus_tag="U0342_002489"
     CDS             348..1604
                     /locus_tag="U0342_002489"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929537.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DEAD/DEAH box helicase family protein"
                     /protein_id="HEM2423820.1"
                     /translation="MRCCSLWLGAGKSVILSEIIRMTTRNKNHVLFLVHRKELIDQIR
                     NTLIMNEVDMEFVKLGMVQTIVGRLNKTSEPSLIIIDESHHVLANSYKKIIHHFSNAK
                     VVGFTATPVRINGGGLGDINDMLIEKVNVKWLIENQFLAPYKYFAPEIVQTETLDIKR
                     TGEFDMTGLDDQFNKRMIWGDVIKHYQKLANGEQAILYASSLYQSEKMAMSFESVGIT
                     SAHIDGKTPKSIRDDIIQRFREGEIKVLCNLDLIGEGFDVPDCSTVIMLRPTQSLSLY
                     IQQSMRGMRYRTGKTAIIIDHVGNVNRFGLPDMERKWSLEPRKGSNSTKAEAPVKICK
                     ECFMTVSQTAKKCEHCGHEFKVEVKPMQVDEAAELQEITEAVFKVNYSSPSECTNMKE
                     LYEYAKEHNYKRGWAFHQGKARGFIK"
     gene            1627..2112
                     /locus_tag="U0342_002490"
     CDS             1627..2112
                     /locus_tag="U0342_002490"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011702027.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF669 domain-containing protein"
                     /protein_id="HEM2423821.1"
                     /translation="MFKVDHNDVFTNGVENGTYEVVLYNANEDATKNGAEFINIDLII
                     RNDVNQKFQNAHIFHRVWKAKATNEYSQTALNTIAKAIQLPNGKDYNTLDELLKDLLT
                     KTCQVTVKNEESEYNGQIYKNLNVKAWAESKITGPLQHVFKKKENELPPVEVNESNLP
                     F"
     gene            2135..4423
                     /locus_tag="U0342_002491"
     CDS             2135..4423
                     /locus_tag="U0342_002491"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA primase"
                     /protein_id="HEM2423822.1"
                     /translation="MYEQIPDELKKLKQWCAFQLVWDEERGKNKKIPMNANNGSYGNS
                     VDERTWADFETALDSLEKYQFDGLGFYFKKPYFGVDIDDIKDEIEDYLYGNTENIAGE
                     FIQTLSSYTEYSVSGTGIHIIAKGSFPEGGRRKGNIEMYPDGRFFVMTGQVIDNYRQV
                     NEATSAIQYLHTKYIGTNEVRQINNLQSTVDLPVSDIIQRAERSKQGAQFKTLYDGLW
                     DGLYPSQSEADLAFANMLAFWTGCNAEKMDEIFRSSGLYRTKWDQKRGAQLYGEMVIN
                     KAIANTSEVYQPGSDLEGYSITVKNQNRTARKVYGLDDTGNAERFRDKFHDIVRFSYI
                     NKGFYFYDSKVWKYDNIGAVKTLVDDVIKDMKSEFAYMENESDAEKAFMKHLKATRSN
                     KGKTNMLKEAQHLMPVLPDEFDRYKYFLNTQNGYINLQNGELINHDRQKMFTKISNIE
                     YTDKIDAPLWQAFLKDIFAGDKELIDYIQKAVGYSLSGSTSEQVMFILFGNGRNGKSV
                     FLDIINDIFGSYATNIQPQTIMVKQQSSNANSDIARLHGARFVTTTEPNEGVRLDEGL
                     VKQLTGGDKVTARHLYKDEFEFTPEFKIWMATNHKPIIRGRDDGIWRRLHLVPFTVKI
                     PDEKVDKQLKYKLRSELTGILNWAVEGFLKWQREGLGMPKAVEKASSEYKSEMDVITA
                     FIEDCCETGENKQINAKTLYETYREWARDNGQYLMSSTKFGKEMGLKFEKKRSNGQTA
                     YKCITLNKEYNPMNKPFFSTSY"
     gene            4757..5074
                     /locus_tag="U0342_002492"
     CDS             4757..5074
                     /locus_tag="U0342_002492"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601407.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VRR-NUC domain-containing protein"
                     /protein_id="HEM2423823.1"
                     /translation="MTAEMDIQNSIRLELSRHGHYVFRANVGKVKLPNGRIFDTGLPK
                     GFPDLFGFRGTDGKMFFIEVKNEIGKLRQEQKNFQQAMEITPAICGVARSAAEAVRIV
                     EEG"
     gene            5076..5288
                     /locus_tag="U0342_002493"
     CDS             5076..5288
                     /locus_tag="U0342_002493"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423824.1"
                     /translation="MKLRDITNSKCDVREYMNVDFPDWLLEQLKDEIDFDIIEALKEY
                     AVIYVKHNALEKEIEPFDIYKKVEEG"
BASE COUNT         2027 a          830 c         1148 g         1465 t
ORIGIN      
        1 acacaaatat agtatataca gcttgggaaa acacgcgtca aatacagatg gaaagtgggc
       61 aactgtataa tcaatttttg cctgacatta gagaaaaggt agttaatcac gttatgggaa
      121 ttgttcctat agtcgcaaga ttaataagaa atcctgaaac aggtcagagg ggtttcttac
      181 tcacagaaaa caatggtaat tttgcaaaaa atcagctaga taatagagag tttgccttgc
      241 aagaagacct attccaaata ggtgatgttg atgttaaagc ttagagaata tcaacaagaa
      301 attataaatg atgtaaaggg ggctttttta cagggatata acagaccgtg cgttgttgct
      361 ccctgtggct aggcgctggt aaatcagtta ttttatcaga aataattcgc atgacaacgc
      421 gcaataaaaa ccatgttctt ttcctagttc accgaaaaga gttgatagac caaatcagaa
      481 acacactcat tatgaatgaa gtggatatgg aatttgtcaa attgggtatg gtacaaacga
      541 tagttggacg tttaaacaaa acttcggagc cttcgttaat cataattgat gaaagtcatc
      601 atgtgttagc aaatagctat aaaaaaataa ttcatcactt ttctaatgcg aaagtggtcg
      661 gatttacagc aacaccagtg agaataaatg ggggtggttt aggagatata aacgatatgt
      721 taatcgaaaa ggttaatgtg aaatggttaa ttgaaaatca attcttagca ccttacaaat
      781 attttgctcc cgaaatcgtt caaacagaaa cattagatat caaacgaact ggtgaatttg
      841 acatgacagg acttgatgat caattcaata aaagaatgat ttggggcgat gtcatcaaac
      901 attatcaaaa gttagcaaac ggagaacaag caatacttta tgcctcttct ctttatcaaa
      961 gcgaaaaaat ggcaatgagt tttgaatcag taggcattac atccgcacat attgacggga
     1021 aaacacctaa atccattcgt gatgacatta tacaacgatt tcgagaaggc gaaataaagg
     1081 tgctttgcaa cttagattta attggtgaag gattcgatgt tccagactgt tctactgtga
     1141 ttatgctaag accaactcaa tctctatccc tgtatattca gcaatcaatg cgaggtatgc
     1201 gataccgaac tggtaaaaca gctattatta ttgaccacgt tggaaatgtc aatcgctttg
     1261 gtttgccaga catggaacga aaatggtcct tagaacctcg taaaggaagt aactccacga
     1321 aagctgaggc acctgtgaaa atttgcaaag agtgttttat gacagttagc cagacagcaa
     1381 aaaaatgtga acattgtgga catgaattca aagtagaagt aaaaccaatg caagttgatg
     1441 aggcagcaga gctacaagaa ataacagaag cagtttttaa agtgaattat agtagtccaa
     1501 gcgaatgtac gaacatgaaa gaattatatg aatatgcaaa agaacacaat tataaaagag
     1561 gatgggcatt ccatcaagga aaagcaagag gatttatcaa ataaaaacga aagaaggaat
     1621 ttaaaaatgt ttaaagtaga tcataatgat gttttcacaa atggagtaga aaatggtacg
     1681 tatgaggtgg ttttatacaa cgcaaatgaa gatgcgacaa aaaacggagc ggagttcatt
     1741 aatattgatt taattattcg taatgatgta aatcaaaaat tccagaatgc gcatattttt
     1801 caccgagtat ggaaagcaaa agcaacaaat gaatatagtc aaacggcatt aaatacaatc
     1861 gctaaagcaa tccaattacc taacggcaaa gattataata cattggatga attattaaaa
     1921 gacctgttaa ctaagacatg ccaagttact gtgaaaaatg aagagtctga gtataatggt
     1981 caaatttata aaaatttaaa tgtgaaagca tgggctgaaa gtaaaattac cggaccatta
     2041 caacatgtat ttaaaaagaa agaaaatgaa ttaccaccag tggaagtaaa cgagagtaat
     2101 ctaccgttct aagcaatgag aggagcgcac aaacgtgtat gaacaaattc cggacgaatt
     2161 aaaaaaatta aaacaatggt gcgcttttca acttgtttgg gatgaagagc gtggcaaaaa
     2221 caaaaaaata ccgatgaacg caaacaacgg ttcatacggt aatagtgtag acgagcggac
     2281 atgggcagat tttgaaactg cccttgattc ccttgaaaaa tatcaatttg atgggttagg
     2341 tttttacttt aagaaaccat attttggtgt ggatattgat gatataaagg atgaaattga
     2401 agattacctt tatggtaata cagaaaatat tgctggtgaa tttattcaaa cactgtctag
     2461 ttacacagaa tacagtgtga gtgggacagg aattcatatt attgcaaaag gcagttttcc
     2521 ggaaggtggt cggcgtaaag gaaacatcga aatgtacccg gacggtcgat ttttcgttat
     2581 gacaggtcaa gtaattgata actacagaca agtcaatgaa gcgacgtctg caatacaata
     2641 tttgcatacg aaatacattg ggactaatga agtaagacaa ataaataatt tacaatctac
     2701 agttgatttg cctgtaagtg atattattca acgtgctgaa cgaagtaaac aaggcgcaca
     2761 atttaaaaca ctttacgacg gattatggga tggattatat ccctcacaat ccgaagcaga
     2821 cttagctttt gcaaatatgc tggcattttg gacaggatgt aatgcagaaa aaatggacga
     2881 aattttccgt tcaagtggtt tgtatcgaac aaaatgggac caaaaacgtg gagcgcaatt
     2941 atatggagaa atggttatta ataaagcgat tgccaatacg tcagaggttt atcaaccagg
     3001 aagtgattta gaaggttact cgatcactgt gaaaaatcag aatcgaactg ctcgaaaagt
     3061 atatggttta gatgatactg gaaatgcaga acgtttccgt gataaatttc atgacattgt
     3121 tcgtttttca tacattaaca aaggattcta tttctacgat tcgaaagttt ggaaatatga
     3181 caacataggc gctgtaaaaa cacttgttga tgatgtgatc aaagatatga agagtgagtt
     3241 tgcttacatg gaaaatgaat cagatgcaga aaaagcattt atgaaacatt taaaagcaac
     3301 aagaagcaac aaaggtaaaa cgaatatgtt aaaagaagca caacatttaa tgccagtttt
     3361 gcctgatgaa ttcgatcgct acaaatattt tttgaacaca caaaacggat atatcaattt
     3421 gcaaaatgga gaacttatca atcatgacag gcaaaaaatg tttacaaaaa ttagcaacat
     3481 cgaatataca gataaaattg atgcgccact ttggcaagcg tttttaaagg atatttttgc
     3541 tggtgataaa gagttaatcg attatattca aaaagcagtc ggttattcat tatcaggatc
     3601 cacgtcagag caagtcatgt ttatcctttt cggcaatggg cgaaatggga aatcggtttt
     3661 tcttgatatt atcaacgata tttttggttc ctatgcgacc aacatccagc cacagacaat
     3721 catggtcaaa cagcagtcta gtaatgcaaa cagtgatatt gcccgtttac atggcgccag
     3781 gttcgttaca accaccgaac caaatgaggg tgtacgttta gatgaaggac tagttaaaca
     3841 gctcacaggt ggcgacaagg tcactgcacg acacttgtat aaggacgaat tcgagtttac
     3901 acccgaattc aaaatctgga tggcaaccaa ccataaacca attatccgag ggagagacga
     3961 tggaatatgg cgaagattac acttagtacc gtttaccgtg aagatacccg atgaaaaggt
     4021 agacaagcag ttaaagtata aacttcgaag cgaactcact ggaatattga attgggcggt
     4081 cgagggcttt cttaaatggc aacgagaagg tttaggaatg ccgaaagcag tagaaaaagc
     4141 aagctccgaa tacaagtcag aaatggacgt tatcactgca tttattgaag actgttgcga
     4201 aacaggcgag aacaaacaga tcaatgctaa aactctctac gaaacatata gagagtgggc
     4261 gagagacaat ggacagtatt taatgagcag cacgaaattt ggtaaggaaa tgggtttgaa
     4321 gtttgagaag aagaggagta acggacaaac tgcatataaa tgcataactt tgaataaaga
     4381 atacaatcct atgaacaaac cattcttttc aacaagttat tagcagtgca ggttcatcta
     4441 aacttgcact gtgtggaatg tattgcagca gaacgagttt gacggtttta gttagttgac
     4501 agtgcaggtt tgcgccaaaa tccataaact tctctataaa aatttttcct aggaaacttt
     4561 tcttatttta ctactaactt gcactattaa taaaaaaagt attaataaag taagtgatag
     4621 caatggattt gggacagtgc aggtttgaac caacttgcac taaacttgca ctgacctgca
     4681 ctgttttagc taataattta gcgattttta atcaacacat aacatatgtt cgtatttttg
     4741 aggaaggagc aattccatga cagcagaaat ggatatacag aattctatac gtttagaact
     4801 ttcccgccat gggcattacg ttttccgtgc caatgttggc aaagtgaaat taccaaacgg
     4861 acgaatattt gatacaggat taccgaaagg ttttccagat ttattcggat ttcgcggaac
     4921 agatggaaaa atgtttttta ttgaagtgaa aaatgagata gggaagttac gacaagaaca
     4981 gaaaaacttt caacaagcga tggaaataac gccagctatc tgtggagtag caagaagtgc
     5041 tgcagaagcc gtgcgaattg tggaggaggg gtaaaatgaa gctaagagat attacaaaca
     5101 gtaaatgcga tgttagggag tatatgaatg ttgattttcc agattggctt ttagaacaac
     5161 taaaggacga aatagatttt gatattattg aggcgttaaa agagtatgcc gttatctatg
     5221 tgaagcataa tgcgctggaa aaagaaatag aaccttttga tatttataaa aaagtagagg
     5281 aggggtaaaa aatgaagagc gacgattaaa gatgtgatga atttagagac caaggcagtc
     5341 aaaatcaatg gaaagactgc acgggtttat cagaagtgtt aattgtgtat ttattaggaa
     5401 atattctgac aatggttaca aaaaatatgt aacccagagc gaaaaacgta acttccaaaa
     5461 atcgcatagt
//
LOCUS       DASEAA010000175         5458 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.175, whole genome shotgun sequence.
ACCESSION   DASEAA010000175 DASEAA010000000
VERSION     DASEAA010000175.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5458)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5458)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5458
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.175"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            40..729
                     /locus_tag="U0342_002494"
     CDS             40..729
                     /locus_tag="U0342_002494"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FadR family transcriptional regulator"
                     /protein_id="HEM2423825.1"
                     /translation="MVEKIERKSLAEQVYDQIKAEITNGTWKIGERIPKEADLMAEFG
                     ISRNTLREAIRALSHIGLLETKQGDGTFVRNNSELNAIMQRRVRESTVQEILEIRHAL
                     DREAVILACDRRTEEDVKTLEKYRHQCQLATEKNDVGAFVKADSALHLTIVKAAHNDL
                     LLDMYVNILEEIQFSITSTTEMSPEANQHNGHAALVKAIEKRNKEQAAHEVTEYITLF
                     KRIDAKNGEKK"
     gene            726..1943
                     /locus_tag="U0342_002495"
     CDS             726..1943
                     /locus_tag="U0342_002495"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464472.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CynX/NimT family MFS transporter"
                     /protein_id="HEM2423826.1"
                     /translation="MNSDLTNKKILTRSSKVMLVLGIILIAANLRTPITSVGPLLGMI
                     QSDLHLTNTMAGLLTTIPLLAFAGLSPFVSKLSRALGIEVLIFVALLTLVLGSLLRPF
                     GGELNLFAGTFMIGLAIAVGNVILPSLIKKEFPFKLGLMTGVYSISMNLCAAIAAGLT
                     VPIAMNNRFSWHGSMVFWAILGIVALVIWLPQLKYNQRSTEKIATHLVTTSVWKSPLA
                     WKISLFMGSQSAIFYISIAWLPNILADQGLSSTSSGLMLSLMQFAVMPITFIIPIVAG
                     RMKNQQLLVGISILFFLIGIFGIMFASGSVLILSIAIIVYGIGSGMSFSLSMMFFNLR
                     TTSATESADLSGMAQSIGYLFAASGPILFGTLHDALGSWQPTLYVLVGITMLMLYCGL
                     DAGRNKFLFPQKK"
     gene            complement(2142..2369)
                     /locus_tag="U0342_002496"
     CDS             complement(2142..2369)
                     /locus_tag="U0342_002496"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464471.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3006 domain-containing protein"
                     /protein_id="HEM2423827.1"
                     /translation="MKKAILDRIEDGKAVFLLEPDQTEWQIDKEKLDSSIKEGDVVTF
                     SETNEIMKHPQETEEMKNRIAEKLERLRGRN"
     gene            complement(2379..3509)
                     /locus_tag="U0342_002497"
     CDS             complement(2379..3509)
                     /locus_tag="U0342_002497"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2423828.1"
                     /translation="MTKKLVICISLIAIFLSGCSFSEPSTSKSNITEKTLNGASFTFF
                     DVGQGDSTLIQAEDGTTILIDTGRQDDDRILTYLKEANIKKIDLLLLTHPHADHIGNA
                     DKVIATYKPKEIWMDGLTFSSSIYEKVIDAALASDAKYKEPRRGEKATFGPFNLEVLS
                     PDKLENDANNDSIAVKITYKDISAIFTGDAEKGREREMVDSGADLEADILDLGHHGSS
                     TSNQPFFLDKVKPQVAVYSAEMANSYGHPHVEVLEWLKERDIKTYGTDVNGTVIIETD
                     GEKIHVQTEKSGTPKAGSSYNKENSTQKTEDATSEELPDSINLNTASSEELQLLPLIG
                     PALAEKIIAERPYQSIDDLKKINGIGDGIVRQIKEQGIAVTK"
     gene            complement(3622..3924)
                     /locus_tag="U0342_002498"
     CDS             complement(3622..3924)
                     /locus_tag="U0342_002498"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HesB/YadR/YfhF family protein"
                     /protein_id="HEM2423829.1"
                     /translation="MNIEVTDQANKWFHDEFDVANGNGIRLFAKYGGSNSSLHPGFSI
                     GLTAEKPQEAAVAEKKEDLIFFIEDHDYWYFKDHDWKIDYEPKTEEVLFSFKEKVK"
     gene            complement(4158..4628)
                     /gene="fri"
                     /locus_tag="U0342_002499"
     CDS             complement(4158..4628)
                     /gene="fri"
                     /locus_tag="U0342_002499"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="non-heme iron-binding ferritin Fri"
                     /protein_id="HEM2423830.1"
                     /translation="MKTINSVDTKEFLNHQVANLNVFTVKIHQIHWYMRGHNFFTLHE
                     KMDDLYSEFGEQMDEVAERLLAIGGSPFSTLKEFLENASVEEAPYTKPKTMDQLMEDL
                     VGTLELLRDEYQQGIELTDKEGDNVTNDMLIAFKASIDKHIWMFKAFLGKAPLE"
     gene            4831..>5458
                     /locus_tag="U0342_002500"
     CDS             4831..>5458
                     /locus_tag="U0342_002500"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEM2423831.1"
                     /translation="MENYSHRFQVNLAGMIDILSNHLYDEKDVYIRELLQNATDAIRT
                     RKKIDSTLEGKIHASLTGDNNEKTLIVEDNGIGLTEDEVHAFLATIANSSKGEKNFDG
                     ESSNDFIGRFGIGLLSCFIVSDEIVMISTSKKDGGTTEWRGKADGTYSVRKIETETRE
                     PGTQVYLRLRADLDEHPECEDVEELINTLKKYGSSLESNIIVEINGLEE"
BASE COUNT         1575 a         1002 c         1012 g         1869 t
ORIGIN      
        1 agaaccaatc atcctacctt tagaaatgga gtgaatagta tggtagaaaa aattgaacgc
       61 aaatcgcttg cagagcaagt ttatgatcaa ataaaagcag aaattactaa cggtacttgg
      121 aaaatcggtg aacgcattcc gaaagaagcg gatttaatgg ctgaatttgg cattagtcgt
      181 aatacgctac gtgaagccat tcgtgcccta tctcatatcg gtttactgga aaccaaacaa
      241 ggtgacggga cttttgttcg taacaatagt gaactaaatg ctatcatgca gaggcgtgtc
      301 cgcgaatcca cggttcaaga aatcctggaa attcggcatg cgcttgacag agaagcagtt
      361 attctggcct gtgatcgacg cacggaagaa gatgtaaaaa cactagaaaa atatagacac
      421 caatgccaac tagcgacgga aaaaaatgat gttggtgctt ttgtgaaagc tgattctgcc
      481 cttcatttaa caattgtaaa ggcagctcat aacgatttgt tgttagatat gtatgtcaat
      541 attttagaag aaatacagtt ttccatcacg agtacaaccg aaatgagccc agaagctaat
      601 cagcataatg ggcacgctgc gcttgtcaaa gcgattgaaa aacgaaataa agaacaagca
      661 gctcatgaag taacagagta tattactctt ttcaaacgaa ttgatgctaa gaatggagaa
      721 aagaaatgaa ttcagattta accaataaaa aaatccttac acgctcgagt aaggtaatgc
      781 ttgttttagg aattatttta attgcggcaa acttacggac accaattacc tctgtaggtc
      841 cgttacttgg aatgattcaa tcagatttac atttaaccaa tacgatggct ggattactta
      901 caacaattcc gctacttgca tttgcaggac tatccccgtt cgtttctaag ctaagtcgag
      961 cacttggtat agaggtatta atttttgtag cactattgac acttgtactt ggtagcttac
     1021 ttcgaccttt tgggggcgaa ctcaatttat ttgctggaac gtttatgatt ggtcttgcta
     1081 ttgctgtcgg aaatgtcatt ttgccaagtt tgataaaaaa agaatttcca tttaaattgg
     1141 gtctaatgac tggagtttat tccatttcga tgaatttgtg tgcagcgatt gcagctggct
     1201 taacggttcc aattgctatg aacaatcgct ttagctggca tggaagtatg gttttctggg
     1261 caattcttgg aatcgttgct ttagtcattt ggcttccaca gttaaaatat aatcaacgct
     1321 cgacggaaaa aattgcaact cacttggtta caacttcggt ttggaagtct ccgcttgcgt
     1381 ggaaaatttc tttatttatg ggttcgcagt cagcaatttt ttatatttcg attgcctggt
     1441 taccaaatat tttggcggac caaggattat ctagtacttc tagtggctta atgctctcct
     1501 taatgcagtt tgcggttatg ccgattacgt ttattattcc tattgttgcc ggacgaatga
     1561 aaaatcagca attactagtt ggaatttcta ttttattctt tttaattggg atttttggca
     1621 ttatgtttgc ttctggtagc gtgcttattt tatcgattgc tatcattgta tacggaattg
     1681 gttcggggat gtcatttagt ttgtcgatga tgttctttaa tttgcgaaca acaagcgcta
     1741 ccgaatcagc ggatctctct ggaatggcgc aatctatcgg ttacttgttt gccgcttccg
     1801 gtccgatatt atttggtacc ctgcatgatg cgcttggtag ctggcaacca accttatatg
     1861 ttttagtcgg tattaccatg cttatgctat actgcggcct agatgctgga cgcaataaat
     1921 ttctctttcc acagaaaaag tgatttttgc gcataaaaaa actagtgcgg aaaaagggag
     1981 taaaccgcac tagctaaaag ggagtttggg attttcattc taaaaaggga aagaaatgaa
     2041 aatgttttgc ttgttgttag cttatacata taataacttt tcaaaaaaag aatgtgctga
     2101 aagaaagatg ataatttcat gagagtttaa aaaagttttt ctcagtttct ccctcttaat
     2161 ctttctagct tttctgcaat tctatttttc atttcttccg tttcttgggg atgtttcatt
     2221 atttcattag tttctgaaaa agtgacgaca tctccttctt ttatggatga atcgagcttt
     2281 tctttgtcaa tttgccattc tgtttggtct ggttctaata aaaaaactgc tttgccatct
     2341 tctatccgat ctaaaattgc ttttttcacc ctaatcacct actttgttac ggcaatgcct
     2401 tgttctttga tttggcgcac aatgccatcg ccaatgccgt taattttttt caagtcatct
     2461 atggactgat atggtcgctc ggcaatgatt ttttctgcaa gcgctggccc aattagtggt
     2521 aataattgta attcttcact agatgctgta tttaaattaa tgctgtctgg taattcttct
     2581 gatgttgcat cttctgtttt ttgcgtgcta ttttctttat tatagctgct acctgctttt
     2641 ggtgtacctg atttttcggt ttgcacatgg attttttcac cgtctgtttc aatgattacc
     2701 gttccattca catctgttcc atatgttttt atatcacgct cttttaacca ctccagcact
     2761 tccacatgag gatgtccgta actattggcc atttcagcag agtaaacagc cacttggggt
     2821 tttactttat ctaggaaaaa tggctggttg gatgtggacg atccgtggtg ccctaaatct
     2881 aaaatatccg cttctaaatc ggcaccgctg tctaccattt ctctttctcg acctttttct
     2941 gcgtcacctg taaaaatagc ggaaatatct ttataggtga tttttacagc gatagaatca
     3001 ttattagcgt cattttccaa tttatcaggg cttaaaacct ctagattaaa tggaccaaaa
     3061 gtcgcttttt cgccgcgtct cggttctttg tatttggcat ctgaagctaa tgctgcgtca
     3121 attactttct cgtaaatact actagaaaaa gttaagccat ccatccaaat ttctttcggt
     3181 ttgtatgtag cgattacttt atcagcatta ccgatatggt ctgcgtgcgg gtgtgtcagt
     3241 agcagcaaat ctattttctt tatattcgct tcttttaaat aggttaaaat acggtcatca
     3301 tcttggcgac ctgtatcaat caaaatagtt gtaccatctt ctgcttggat aagtgtgcta
     3361 tccccttggc caacatcaaa aaatgtaaaa cttgcaccat tcaatgtttt ttcggtaatg
     3421 ttcgatttac tcgttgatgg ttcggaaaaa ctacaaccgc ttaaaaatat cgcgattaaa
     3481 cttatacaga ttactaattt ctttgtcatc tttctcctcc tgctctctta gtagaatagc
     3541 aaaggaaggc gaaacagtaa agtttttaaa acaaaaaccg cctgaaatca atttgattac
     3601 acgcggtcat ttatgttgga ttcatttcac tttttcttta aaggaaaaaa gtacttcttc
     3661 cgtttttggt tcatagtcaa ttttccagtc gtggtctttg aaataccaat agtcatggtc
     3721 ttcaatgaag aaaattaagt cttctttctt ctcagcgact gctgcttctt gcggtttttc
     3781 ggcagttaaa ccgatagaga aaccaggatg caaggaactg ttagaaccac cgtatttcgc
     3841 aaaaagtcga attccattac cattagctac atcaaactca tcatgaaacc atttatttgc
     3901 ttggtccgtt acctcgatat tcatactttt cactcctcgt ttccaatttt ttcgtaatga
     3961 ttgttattca agaatagcag atttcttggt gaatttcact ttttctgctt tttgttatga
     4021 agataatata cctctttcaa agaaacttta aaccacattg tgttaagaca atgtaaaaat
     4081 aaggaaattg tactataaca gactggggca aaaaaaactg tgtgagacga ttaatcccac
     4141 acagttttta taactcttta ttctaatggc gcttttccta agaatgcttt gaacatccag
     4201 atatgtttgt caatgcttgc tttgaaagca attaacatat cgtttgttac gttgtcgcct
     4261 tctttgtcag taagctcaat accttgttga tattcgtctc taagtaattc taatgttcca
     4321 actaagtctt ccattaattg atccattgtt tttggtttcg tataaggagc ttcttcaacg
     4381 ctcgcatttt ctaaaaactc ttttaaagtc gagaatggac ttccgccgat tgctagtaag
     4441 cgttctgcta cttcgtccat ttgttcgccg aattcgctat ataaatcatc cattttttca
     4501 tgtaaagtga agaagttgtg gcctctcata taccaatgaa tttgatgaat ttttactgtg
     4561 aatacgttta ggttcgctac ttggtgattc aaaaattcct ttgtgtctac tgagttgatt
     4621 gttttcataa ttatcttcct cctattttat aataattatc acttaataat aagtataatc
     4681 tatttccaca tcaatgtcca gtgtggaaac catcacaaag tatttaccac tgatataaat
     4741 tcttaaacat ctattattgt tttctcatta tttatctctt cttttatgat agaataaaaa
     4801 ggacttttgt acaactagga ggaccaagct atggaaaatt attctcaccg ctttcaggtg
     4861 aacttggctg gtatgattga cattctctca aaccaccttt atgacgaaaa agatgtttat
     4921 attcgcgaat tactgcaaaa tgcaaccgat gccattcgca ccaggaaaaa aatcgattca
     4981 actttagaag gtaaaatcca tgcatctcta actggagata ataatgaaaa aacattaatt
     5041 gtagaagaca acggaattgg tttaacggaa gatgaggttc acgcttttct agctactatt
     5101 gctaattcat caaaaggcga aaaaaacttt gatggagaaa gttccaatga ctttattggt
     5161 cgttttggga ttggtttact ttcttgtttt attgttagtg atgaaattgt aatgatttct
     5221 acttccaaaa aagatggtgg cacaacagaa tggcgcggaa aagcggacgg aacttattcg
     5281 gttcggaaaa tagaaacgga aactcgcgaa ccaggtacac aagtgtattt gcgcttacga
     5341 gctgatttag acgagcaccc tgaatgcgag gacgtagaag aattaatcaa tacactcaaa
     5401 aaatatggtt cctctttgga aagtaatata atagtagaaa ttaatggttt agaagaag
//
LOCUS       DASEAA010000176         5453 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.176, whole genome shotgun sequence.
ACCESSION   DASEAA010000176 DASEAA010000000
VERSION     DASEAA010000176.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5453
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.176"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            133..1278
                     /locus_tag="U0342_002501"
     CDS             133..1278
                     /locus_tag="U0342_002501"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2423832.1"
                     /translation="MTKSIRPELRDIQVSGIRTFNTRVTGIPDMIRLTLGEPDFPTPE
                     HVKQAAISAIEENFTNYTPNAGMPELLEAASTYFHEKYDLSYNNKEIIVTVGATEAIS
                     VALQTILEPGDEVILPDPIYPGYEPLITLNRAHPVKVDTTETNFKLTPEQLRAHITPK
                     TKALIIPYPSNPTGVTLSKKELFALAEVLNETGIFVIADEIYSELTYHEEHVSIAPLL
                     REQTIVINGLSKSHAMIGWRIGFLLAPEALTQEMLKIHQYSVTCASSISQKAALEALT
                     NGKDDAFQMRTEYKTRANFTQDRLEKMGFTVIPPDGAFYFFVKLPDEITENAFDWAVK
                     LAEEAKVAVVPGNAFSEKGDRYFRLSYATSFNNLAEALDRMAQFIAK"
     gene            complement(1315..2175)
                     /locus_tag="U0342_002502"
     CDS             complement(1315..2175)
                     /locus_tag="U0342_002502"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464530.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM2423833.1"
                     /translation="MEKIGFVGTGVMGSSMAGHLLEAGYEVLVYTRTKTKAEDLLEKG
                     ALWIKTPGELANKVDILISMVGYPKDVEELYLGENGFLENLAVGTVAIDMTTSSPALA
                     KKMAEFGREKGIGVLDAPVSGGDIGAKNGTLAIMVGGSEDVFLKVKPIFDILGSSVIL
                     QGDAGAGQHTKMVNQIAIASNMIGVTEAIIYAEAAGLNPSSVLDSISGGAAGSWSLAN
                     LIPRVLKDDFSPGFFIKHFIKDMGIAISEAKQMGLELPGLTLAEKMYQTLAEQGLSEE
                     GTQALIKYYR"
     gene            complement(2188..3222)
                     /locus_tag="U0342_002503"
     CDS             complement(2188..3222)
                     /locus_tag="U0342_002503"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464529.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM2423834.1"
                     /translation="MVIYLLAGFFLLLFIVLSFIDRRRISNGIILTMALFFSVLSVVY
                     ATFSKGNELLVSVMGTVLLLLVLLIPFFVVGIATMLIVNGRLMLKREGRKLANMLPLI
                     IGLGILALIITWFGSILKTGSPILGIVVVFIVALVGYFSFLFLSFLLSTFLYQFNFPR
                     YNQDFLIVLGSGLIGGDRVPPLLASRLNRAIKFYDKQYAKKGKRATFIVSGGQGANET
                     ISEAEAMRGYLIEKGIDENFIIMEDQSVNTLQNMKFSKAKMDAIMSNYNSLFSTNNFH
                     LFRAGIYARKAGLKSQGIGAKTALYYMPNALIREFIAITVMYKKVHMVLLGLLLLFFA
                     FLAIIGVTFR"
     gene            complement(3335..5053)
                     /gene="ptsP"
                     /locus_tag="U0342_002504"
     CDS             complement(3335..5053)
                     /gene="ptsP"
                     /locus_tag="U0342_002504"
                     /EC_number="2.7.3.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464528.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphoenolpyruvate--protein phosphotransferase"
                     /protein_id="HEM2423835.1"
                     /translation="MAKELKGIAASDGIAIAKAYLLVEPDLSYEKTEVTDVESEVKRF
                     ESALEVSRTELSMIREKAAKDLGEDKAQIFDAHLLVLNDPELTGPIEESIKNSKTNAE
                     TALQETTDMFIGMFESMDNEYMRERAADIKDVRKRVLSHLLGVTIPNPALIDEEVVVV
                     AADLTPSDTAQLNRNFVKGFVTDIGGRTSHSAIMARSLEIPAVVGTKEVTASVAKNDI
                     VIIDGLEGNVIIHPTEEQIAHYEKIKSDFALQQAEWDKLKNEKTVSKDGVHVELAANI
                     GTPNDLEGVISNGGEAVGLYRTEFLYMGRDNFPTEEEQFEAYKAVVSGMDGKSVVVRT
                     LDIGGDKTLPYLELPEEMNPFLGFRAIRLCFANEELFRTQLRALLRASVYGNLKIMFP
                     MIATVNEFRQARDILLDEKAKLKAAGTEVSDSIELGIMIEIPAAAVLADQFAKEVDFF
                     SIGTNDLIQYTMAADRMNERVSYLYQPYNPSILRLVKMVIDASHKEGKWTGMCGEMAG
                     DQTAVPLLLGLGLDEFSMSASSILKSRSLIKRLDQSEMVKLAEEALNKSTAEEVVELV
                     EKYTAE"
     gene            complement(5053..5319)
                     /locus_tag="U0342_002505"
     CDS             complement(5053..5319)
                     /locus_tag="U0342_002505"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphocarrier protein HPr"
                     /protein_id="HEM2423836.1"
                     /translation="MEQASFVVIDETGIHARPATLLVQAASKYSSDVQIEYTGKKVNL
                     KSIMGVMSLGIGKGADITIYTEGSDEKEAIEGLTEVLKKEGLAE"
BASE COUNT         1713 a         1173 c          880 g         1687 t
ORIGIN      
        1 aagtgcaagg ttttttaggt atattttcag acattttgct tttcttcctt tttaagctat
       61 aatggaatga aatcacgaag cttactccca cctgattttc acgggatttt cttataaaga
      121 aaggtgacga aaatgacaaa atctattcga ccagaattac gcgatattca agtaagtggt
      181 atcagaactt ttaatacacg agtgacgggt attcctgata tgatccgttt aacacttggc
      241 gaacctgact ttccaacgcc tgagcatgtc aaacaagcgg ccatttcagc aatagaagaa
      301 aatttcacca actatacacc caatgccggg atgccagaat tactcgaagc agcttccact
      361 tattttcatg aaaaatatga cttgtcctat aataataaag aaattatcgt tacggtcggc
      421 gctacagagg ctatctccgt tgccttgcaa acgattttgg agcctgggga tgaagttatc
      481 ttaccagacc ctatttatcc aggttacgag cctctaatta cgttaaatag agcgcacccg
      541 gttaaagttg atacgaccga aactaatttc aaattaacac ctgaacaatt acgagcacat
      601 atcacaccaa aaactaaagc acttatcatt ccttatccat ccaatccgac cggtgttaca
      661 ctctctaaaa aagaactttt cgcattagca gaagtactaa atgaaacagg tatttttgtc
      721 attgctgatg agatttacag tgaattaact tatcacgagg agcacgtgag cattgcgcct
      781 ttactaagag agcagacaat cgttatcaac ggtttatcaa aatctcacgc aatgattggt
      841 tggcgaattg gctttttact tgcaccagaa gcccttacac aagaaatgtt gaaaatccat
      901 caatattcgg ttacttgcgc aagttccatt tcccaaaaag cagcactaga agctcttact
      961 aacggcaaag acgatgcttt tcaaatgcga actgaataca aaacacgcgc taatttcact
     1021 caagatcgac tagaaaaaat gggctttact gtcatcccgc cagatggtgc attttacttc
     1081 ttcgtcaaac ttcccgatga aataaccgaa aatgctttcg attgggctgt aaaacttgct
     1141 gaagaagcca aggttgcagt tgttcctgga aatgcttttt ccgaaaaagg cgatcgttac
     1201 ttccgtcttt cttatgctac ttcctttaat aatcttgctg aagcattaga tcgaatggct
     1261 cagtttatag caaaataaaa aaacatccac taacttaaat tagtggatgt ttttttaacg
     1321 ataatattta atgagcgctt gcgtcccttc ttcactcaaa ccttgttcag ctagcgtttg
     1381 atacattttt tcagctaaag ttagcccagg aagttctaag cccatttgtt ttgcttctga
     1441 gattgcgatt cccatatctt ttataaaatg cttaataaag aaacccggag aaaaatcatc
     1501 cttaagtaca cgtggaatca agtttgcaag cgaccaactg cctgctgcac cacctgaaat
     1561 tgaatcgaga acacttgatg gattaagtcc agccgcctcc gcataaatga tcgcttcagt
     1621 cacaccaatc atgttggaag caattgcaat ttgattcacc attttggtat gttgtccagc
     1681 acctgcatca ccttgcagaa tcacactgct accaagaatg tcaaaaattg gtttcacttt
     1741 taaaaatacg tcttcagatc ctcctaccat aattgcgagc gtgccatttt tcgcgcctat
     1801 gtcgccacct gaaacaggag catcgagtac accgattcct ttttcacggc caaattcagc
     1861 cattttttta gctaatgccg gtgaggaagt tgtcatatcg attgctactg tgccaaccgc
     1921 taaattttct aaaaagccat tttcgcctaa gtaaagctct tccacatctt ttggataacc
     1981 aaccattgaa attaatatat ccactttatt agccaattct cctggtgttt ttatccatag
     2041 tgctcctttt tcaagtaaat cttctgcttt tgtttttgtg cgagtataca ccaatacttc
     2101 ataaccagcc tccagtaaat gccctgccat actcgaaccc attacgcctg taccaacaaa
     2161 tccaattttc tccatcaggc taacctccta tctaaaagta acacctataa tcgctaaaaa
     2221 cgcaaaaaac aatagtaata aaccaagtaa gaccatatgt acttttttat acattacagt
     2281 aatagcaata aattctcgaa ttaacgcatt aggcatatag tataaagctg tttttgcacc
     2341 aatcccttga ctcttcaagc ccgcttttct tgcataaata cctgctctaa ataaatgaaa
     2401 attattcgtt gaaaataaac tattatagtt tgacataatt gcatccattt ttgcctttga
     2461 aaatttcata ttttgcagtg tattaacgga ttgatcttcc ataataataa aattttcatc
     2521 aatgcctttt tctattaaat aacctcgcat cgcttctgct tctgaaatag tttcattagc
     2581 accttgtcca ccagatacga taaaagtagc tcgtttgcct tttttggcgt attgcttgtc
     2641 gtagaactta atagcgcgat tcaaccgact agcaagcaat ggaggtactc tatcaccgcc
     2701 tatcagacca cttcctagta caatcagaaa atcttgatta tatcttggga aattaaattg
     2761 atagagaaaa gtcgataaaa gaaacgataa aaataaaaag gaaaaataac caactaatgc
     2821 cacaataaaa actaccacaa tcccaagaat cggactacct gtttttaaaa tactaccgaa
     2881 ccatgtaata ataagtgcta aaatgcctaa accaataatt aaaggaagca tattggctaa
     2941 tttacgccct tcacgtttca acattaatcg tccatttaca atgagcatcg ttgctatccc
     3001 tacaacaaaa aatggaataa gtaaaactaa taaaagtaac accgtcccca taaccgagac
     3061 gagtagttca ttcccttttg aaaaagtagc ataaaccacc gaaagcacag aaaaaaatag
     3121 tgccattgtc aaaataatcc cattgctaat acgtcgtcta tctataaacg acaagacaat
     3181 gaacagaagc agaaaaaaac ctgctaatag atagataacc aatcttgttg ccccctttta
     3241 aaactaactg tatttccaat tatacttggg cggaggctat ttcacaacat aaaaagacct
     3301 agacaacaaa attgtctagg tctttattca gatattattc tgcagtatat ttttcaacta
     3361 attctacaac ttcttctgct gtagatttat ttaaagcttc ttccgctaat ttcaccattt
     3421 cagattgatc taaacgtttg attaacgaac gagatttaag aatgcttgaa gcactcattg
     3481 aaaattcatc taagcctagg cctaaaagaa gtggtacagc cgtttgatct ccagccattt
     3541 ctccacacat accagtccat ttgccctctt tatgagaagc atcgataacc attttgacta
     3601 aacgtaaaat ggatggattg tatggttggt aaaggtaaga aacgcgttca ttcatacggt
     3661 ctgcagccat tgtatactga attaagtcat ttgttccgat agagaagaaa tcaacttctt
     3721 tcgcaaattg atcagcaaga acagcagcag caggaatttc aatcataatt ccaagttcga
     3781 tggaatcaga tacttctgtt ccagcagctt ttagttttgc tttctcatct agtaaaatat
     3841 cacgcgcttg acggaattca tttactgttg caatcatcgg gaacataatt tttaagttac
     3901 catatacact tgcgcgaagt aaggcgcgaa gttgtgtacg gaataattct tcattcgcaa
     3961 aacaaagacg gattgcacgg aatcctaaga atgggttcat ttcttcagga agttctaggt
     4021 atggtaatgt tttatcgcca ccgatatcta atgtacgaac aaccacagat tttccgtcca
     4081 ttccggaaac tactgcttta taagcttcga attgctcttc ttctgttggg aaattgtcgc
     4141 gacccatgta caagaattct gtacgataaa gtccaactgc ttccccaccg ttagaaataa
     4201 caccttctaa atcattcgga gttccgatgt ttgctgcaag ctccacgtga acgccgtctt
     4261 tagaaacggt tttttcattt ttaagtttat cccattctgc ttgttgtaaa gcaaaatcag
     4321 atttaatttt ttcatagtga gcgatttgtt cttctgttgg gtggatgata acattacctt
     4381 ccaaaccatc aataataaca atatcgtttt tcgctacgct agcagtaact tcttttgttc
     4441 caactactgc tggaatttca agagaacgtg ccataatagc ggagtgagaa gtacgtccac
     4501 caatatccgt tacgaaacct ttaacaaagt tacggttaag ttgtgcggta tcggaaggcg
     4561 ttaaatcagc tgcaacaaca actacttcct catcaattaa agctggatta ggaatagtta
     4621 cacctagtaa gtgagaaaga acacgtttac gtacatcttt aatatccgct gcacgttcac
     4681 gcatgtattc gttgtccata gattcaaaca taccaataaa catgtctgtc gtttcttgta
     4741 aagctgtttc tgcattcgtt ttagaatttt tgatactttc ttcaattggt cctgttaatt
     4801 caggatcatt taacactaga agatgcgcgt caaaaatttg tgccttatct tcgcctaagt
     4861 ctttagcagc tttctcacga atcattgaaa gttctgttct agaaacttct aacgcgcttt
     4921 caaaacgctt tacttcactc tcaacatccg taacttctgt tttttcatag gaaagatcag
     4981 gttcaacgag cagataagct ttcgcaatgg caatcccatc agatgctgcg atacctttca
     5041 actctttagc cattattcag ccaatccttc tttcttaaga acttcagtta gtccttcaat
     5101 tgcttctttt tcatcgctac cttcagtgta gatagtaatg tcagcgcctt taccaatacc
     5161 aagagacata acgcccatga ttgatttaag gtttactttt ttgccagtgt attcaatttg
     5221 aacgtcagag ctgtatttac ttgcagcctg caccaataga gttgccgggc gtgcgtgaat
     5281 tcctgtttca tcgattacta caaaacttgc ttgttccata atttacattc tcctttgtaa
     5341 agaaatttgt tgtaaccttt taagccgaaa aaacttcagc caaaaagact atccctcaat
     5401 taaaaagagt accatgtttt acctattgtt acaactattt gattaaaaat ttt
//
LOCUS       DASEAA010000177         5409 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.177, whole genome shotgun sequence.
ACCESSION   DASEAA010000177 DASEAA010000000
VERSION     DASEAA010000177.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5409)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5409)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5409
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.177"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            110..2140
                     /locus_tag="U0342_002506"
     CDS             110..2140
                     /locus_tag="U0342_002506"
                     /inference="COORDINATES: protein motif:HMM:NF014581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type IV secretory system conjugative DNA
                     transfer family protein"
                     /protein_id="HEM2423837.1"
                     /translation="MSFIFGIKALKITRQAFYKYRVKPEELVKKGDSRWTTILELFEI
                     YRAIPEKVLVFPGYGGTPISHYRDKLFIDPTPTNNCIIGTTRSGKGETEVFATIDNIS
                     RAEKQDSMVLNDPKGELFTASYKTLRKRNFDVLAFNLTEPDEGVAYNLLETIKQYYTR
                     GDIERAQALTNSLTYSLYRAATAGKGGTDDFFNSCAASLVNALILGLLDICARTNEME
                     KVTMDNVAYMLNTMGSDVKRSFERVEDQKVLVETNALDEFFQQFPNNHVAKKQYATSN
                     FSTDKTRASIYTTAMEKLNIFSMDNIARMTSSNDIDLDLIGFPQRIEIVGNPNSRCKI
                     LLKRGAKKIYQDQISLNRRGVGLLRFNCDIQEGDRLEIFINQSGKAFGENAWKKETYS
                     IHYSPVMNDDKPVIDEYTGKVEYHVAMKLKLLESACEGEKIQVKMLNKTKPTAIFMIL
                     PDYDASNHVIASIFIRQLYFILADNATRTRGIKCHRRVRFILDEFGNMPAIEGMENII
                     TVCLGRNISFDLYVQDYAQIISKYGEKVGETIKSNCGNHIYILTTNGDTAKEFSRNLG
                     TKTVYGKEKSYGQGDLKSNVSERSDDKQLLDATQLLQLKEGESVILRPLKRQDRKRNR
                     VRAYPIFNRGSTAMKFRYEYLNEDFDTTQFFSDLNIRGEHADFDLESNRIAI"
     gene            2223..2444
                     /locus_tag="U0342_002507"
     CDS             2223..2444
                     /locus_tag="U0342_002507"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="CopG family transcriptional regulator"
                     /protein_id="HEM2423838.1"
                     /translation="MTTITFRVSDKEKAFIQEMAKLNGISISELSRKQIIEGLEDQID
                     LQSYERAIKAHQVKDESISFDEMKKELEL"
     gene            2441..2716
                     /locus_tag="U0342_002508"
     CDS             2441..2716
                     /locus_tag="U0342_002508"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003866042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II toxin-antitoxin system RelE/ParE family
                     toxin"
                     /protein_id="HEM2423839.1"
                     /translation="MSKHFHVRFEKEAQKVLKKMDRFQAKLILSWIEKHIEGTDDPRQ
                     HGKSLVGNRSGQWRYRVGDYRLIAEIQDNEVIVLILNIGHRRDIYDK"
     gene            2888..4873
                     /locus_tag="U0342_002509"
     CDS             2888..4873
                     /locus_tag="U0342_002509"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423840.1"
                     /translation="MGIIEKASTSDVFFYLSKGSEYMNDDEILKILLKFADFFSINSF
                     AKDVFRDIFIWLIKGLVTINSVMENVFFYSVKLISWPTTKAMETLINDPKKGLIIIAV
                     TLMGLTLMFIGGKIILGDRMSPQEFTRNFIMVTLVLIGLTGFMGSLEKLTFAGVDVGK
                     NAFSSEENSKISYQIVKDNITDLKALDAAGWKTTTPKKANYLNEDSWKTVNFNEVIDE
                     EFKHAEGLAKKRIDQDDNGQNIVEDLDSSFWMPSTDDYYYRYHVGFTAIIIQEVFILL
                     VFAFSTLIIVETSFELGVKGVIGPFIAASDMATGQRIKNLLIDLIGAYVKIVVLVFII
                     QLYRLFMNWTQSIHFSDSLVETTVLKCLIVVGAFFAVLKGSSSVQRLLGIDVSQSFGQ
                     QALMGTMAGAQIMKGAGGLASGLTKGTARQFGKNGFIGRRAQSLSNKRQEKAKKEALT
                     ESLGGKENYKEKMNPRRLAQREGFNEAQQILATEQAMKQQESSGTNSKNEGSNKNNPG
                     SSNKNTLSTNSSDNKGKNSIRPVHKGTSSANSSIAEQKDIQSNDTNTKKGSNAVNRLN
                     QQKANKPNSGKQTAPLGKQYSKNTSTSANGTTKTSFNKTESEEKKQYSTKVNRDSQKS
                     VKTASKKTASKMVPKKPQKTQINKKSIIKVTEPKVTD"
     gene            4890..5162
                     /locus_tag="U0342_002510"
     CDS             4890..5162
                     /locus_tag="U0342_002510"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423841.1"
                     /translation="MYQIPKSTRTEVKLFLGLFFVDIAVIGIGVFFGIQTMGYVAGLW
                     RIIYIFALAGLSIFLIVRYNGHRMYRVLFQAIKKDTKKYYSVMGED"
     gene            5164..>5409
                     /locus_tag="U0342_002511"
     CDS             5164..>5409
                     /locus_tag="U0342_002511"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423842.1"
                     /translation="MAKSNIRKTVIDALPIANMDNNVILQFKNGIFYTILLLRSTDIN
                     ALNEDESIKAIGQFARFNTQYIDPYKIISMRFPADTKD"
BASE COUNT         1992 a          724 c         1027 g         1666 t
ORIGIN      
        1 actttcgata tttgaatttg atcaagttga atttgtctcc tttcactggg aatggttatt
       61 tcaaccattc cttttttttc attcaattcc atttttaatg tatctgatat tgtcttttat
      121 attcggtata aaggcattaa agataactcg tcaagctttt tacaaatata gagttaagcc
      181 agaagaattg gtaaaaaaag gtgatagcag gtggacgact atactagaat tattcgaaat
      241 atatcgagct attcctgaaa aggtactggt atttccagga tatggcggaa cccctataag
      301 tcattaccgt gataaactat tcattgaccc aacaccaact aataattgta ttatcggtac
      361 tacgcggtca ggtaagggcg aaacagaagt atttgcaaca attgataata tatcacgtgc
      421 cgaaaagcaa gatagtatgg tgcttaatga tccaaagggt gaactcttta cagcgagtta
      481 taaaacactt cgtaagagga actttgacgt tttagccttt aatctgacag agccagatga
      541 aggcgtagca tataatttgt tagaaacaat aaaacaatat tatactcgag gagatattga
      601 acgggctcaa gcattaacta atagtcttac ttactcttta tatcgtgcag ctactgctgg
      661 taaaggaggc acggatgatt tctttaattc ttgtgctgct tctttagtga atgctctaat
      721 tttaggatta cttgatatat gtgcaagaac taatgaaatg gaaaaagtaa caatggataa
      781 tgtagcatat atgcttaaca ccatgggtag tgatgtaaaa cgttcgtttg aaagagtaga
      841 agatcaaaag gtacttgtag aaacaaatgc tttagatgaa ttcttccaac aatttcctaa
      901 taatcatgta gcgaaaaaac aatacgcaac ctccaatttt agtactgata aaacgcgtgc
      961 atctatttat acaacagcta tggaaaaact aaatattttt tcaatggata atattgcgcg
     1021 tatgacctct tcaaatgata tagatttaga tctgattggt tttccacaaa gaattgaaat
     1081 tgttggcaat ccaaattctc gatgtaaaat attacttaaa cgaggcgcaa aaaaaattta
     1141 tcaagatcaa atttcactta accgaagagg agttggctta cttcgtttta actgtgatat
     1201 tcaagaagga gatcgtctag aaatattcat taatcagtca ggaaaagcat ttggagaaaa
     1261 cgcgtggaaa aaagaaactt attcaattca ctatagccct gtaatgaatg atgataagcc
     1321 tgttattgac gaatatacag gtaaggttga atatcacgta gccatgaaat taaaattgct
     1381 agaatcagct tgtgagggcg aaaagattca agtgaaaatg cttaacaaaa ccaagccaac
     1441 agctatattt atgattcttc ctgattacga tgcttctaat catgttattg cgagtatttt
     1501 tattcgtcag ttatatttta ttttagctga taatgcgaca agaacgcgcg gaataaagtg
     1561 tcatcgacgt gttcgtttta tcctagatga attcggtaat atgccagcta tagaaggtat
     1621 ggaaaatatt ataacagttt gtttaggtcg taatattagt tttgatttat atgtacaaga
     1681 ttacgcacaa attatcagta agtatggtga aaaagtaggt gaaacaatca agtccaactg
     1741 tggtaatcat atatatatat taaccacaaa tggagataca gcaaaagaat ttagtcgtaa
     1801 tttaggtaca aaaactgtat atggaaaaga gaagagttac ggtcagggcg atttgaaatc
     1861 aaatgtaagt gaacgatctg atgataaaca actgttagat gcaactcaat tattacaatt
     1921 gaaagaaggc gaatcagtta tcctcagacc gctgaaacga caagatagaa aacgaaatcg
     1981 cgtgagagct tatccgattt ttaatcgcgg atcaacggca atgaaattcc gttatgaata
     2041 tttaaatgag gattttgata ctactcaatt cttttcagat ttgaatattc gaggagaaca
     2101 tgccgatttt gatttggaga gtaatcgtat agcaatataa atgatttttc ttcccctacg
     2161 tacacatatg tgttacaatt gatttaagat aaatgtgtat gtgtagaaag gagtgttaat
     2221 caatgactac cattacattt cgagtatctg ataaagaaaa agcgtttatt caagaaatgg
     2281 ctaagcttaa cggtatctct atttcagaac ttagtcgtaa acagattata gaaggtttag
     2341 aagatcaaat tgatttacaa tcgtatgagc gtgctataaa ggcgcatcaa gtgaaagatg
     2401 aaagtatttc ttttgatgaa atgaaaaagg aacttgaatt atgagtaaac attttcatgt
     2461 gagatttgaa aaagaagctc aaaaagtatt aaaaaagatg gatagatttc aagcaaaatt
     2521 gatattatcc tggattgaaa aacatattga aggtactgat gatccaagac aacatggtaa
     2581 aagtcttgtt ggtaaccgga gtggacaatg gcgatatagg gttggagatt atcgcttaat
     2641 tgcagagatt caagataatg aagtgatagt gttaatttta aacatcggac acaggagaga
     2701 tatttacgat aaataaaaag agaggtgaaa aataatatgg cgatattttt tataatcatt
     2761 atttttgggt ttctggcaat aattgctttt ggagcgatta agttaatgtt taaattaatt
     2821 ggttttatta ttgatcaaac tttgggattt attttcgtaa aaagagatca acataaactt
     2881 aaaaaatatg ggcattattg aaaaggcatc tacttcagat gtcttttttt atttgtctaa
     2941 gggaagtgaa tatatgaatg atgatgaaat tttaaaaatt ctattaaagt ttgcagattt
     3001 ttttagcata aactcatttg caaaagatgt ttttcgagac atatttattt ggttaatcaa
     3061 aggattagtc actataaata gcgtaatgga aaatgtcttt ttttattcgg ttaaattgat
     3121 tagttggcca acaactaaag caatggaaac actaattaat gatcccaaaa aaggactaat
     3181 tattatcgct gtaactctta tgggtttaac tttaatgttc attggtggaa agataatctt
     3241 aggtgaccga atgtctcctc aagaattcac acgaaatttt attatggtta cattagttct
     3301 tatcggatta actggtttta tgggaagttt ggaaaaatta acatttgcag gtgtagatgt
     3361 gggtaagaat gcatttagtt cagaagaaaa tagtaagata agctatcaaa ttgtaaaaga
     3421 taatattact gacttgaaag cgctagatgc agcaggttgg aaaaccacaa cacctaagaa
     3481 agcaaactat ttgaacgaag atagttggaa aacagtaaat tttaatgaag taatagatga
     3541 agaatttaaa catgctgaag gattagctaa aaagagaata gatcaagatg acaatggaca
     3601 aaatatagta gaagatttag atagcagttt ttggatgccg tcaacagatg actattatta
     3661 tcgctatcat gttgggttta cagctatcat tattcaagaa gtatttattc ttttagtgtt
     3721 tgcattctca actttaataa ttgttgagac atcgtttgaa ttaggagtaa aaggtgttat
     3781 cgggcctttt attgcagcat ctgatatggc aacagggcag cgaattaaaa atctcttgat
     3841 agatttgata ggagcttacg ttaaaattgt tgtattagtt tttatcattc aactttatag
     3901 gctctttatg aattggactc aaagtataca tttttcagac tcactagtag aaacaactgt
     3961 attaaagtgt ttgattgttg taggagcatt tttcgcagta ctaaaaggat ctagttcagt
     4021 acaaagactg ttgggtattg atgtatctca aagttttgga cagcaagctt taatggggac
     4081 gatggctggc gcacaaatta tgaaaggtgc tggtggttta gcaagtggat taactaaagg
     4141 tacagcgaga caatttggca agaatggttt tattggcaga cgagcacaat ctttatctaa
     4201 taagagacaa gaaaaagcta aaaaagaagc tcttactgaa tctttaggtg gaaaagaaaa
     4261 ttataaagaa aaaatgaatc ctagaagact agcgcaacgt gaaggtttta atgaagcgca
     4321 acaaatttta gctacagaac aagcaatgaa gcaacaagaa tcatcaggta ctaattcaaa
     4381 aaatgaaggt agtaataaaa ataatccggg ttctagcaac aaaaacacat tatctactaa
     4441 cagttcagat aataaaggta aaaattctat aagacctgtc cataaaggaa caagtagtgc
     4501 aaattcatct attgccgaac agaaagacat tcagtcaaat gatactaata caaaaaaagg
     4561 ttcaaatgca gtgaacagac taaatcaaca aaaagctaac aaacctaatt cgggtaagca
     4621 aactgctcca ttaggcaaac agtattcaaa aaatacttct acttctgcaa atggtaccac
     4681 gaaaacaagt ttcaataaaa ctgagtcgga agagaaaaaa caatattcta ctaaagtgaa
     4741 tagggatagt caaaagagtg taaaaacagc tagtaaaaaa acagctagta aaatggttcc
     4801 taaaaagcct caaaaaacgc aaataaataa aaaaagtatt attaaagtga cagaaccaaa
     4861 agtcacagat taataaagga ggatataaaa tgtatcagat tcctaagtca acaagaacag
     4921 aagttaaact atttttagga ttgttcttcg ttgatatagc tgttataggt attggagtgt
     4981 tctttggaat acaaacgatg ggttacgtgg ccggtttgtg gagaattata tatatatttg
     5041 cacttgccgg gcttagcata tttttaattg ttcgttataa cggtcatcgt atgtatcgag
     5101 ttctttttca ggcgattaag aaagatacta aaaaatatta ctctgtgatg ggagaagatt
     5161 gatttggcta aaagtaatat tagaaagaca gttatagatg cattaccaat tgctaacatg
     5221 gataataacg ttattttgca atttaagaat ggtatatttt atactattct tttactcaga
     5281 agcacggata taaatgcatt gaatgaagat gaatctatta aagcaatagg acaattcgct
     5341 cgatttaaca cacaatatat tgatccatat aaaattattt ctatgcgttt tccagcagac
     5401 acgaaggat
//
LOCUS       DASEAA010000178         5353 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.178, whole genome shotgun sequence.
ACCESSION   DASEAA010000178 DASEAA010000000
VERSION     DASEAA010000178.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5353
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.178"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            178..501
                     /locus_tag="U0342_002512"
     CDS             178..501
                     /locus_tag="U0342_002512"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003747248.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2423843.1"
                     /translation="MTTFERVKVLAEKQKISLKELALKLNMGENAIYSWKVKTPGADK
                     LKAVADYFNVSTDYLLGRTDNPQIGKDITEEVVTLAAHIDPSATEEDMKKILEYIDFI
                     QQKYK"
     gene            518..970
                     /locus_tag="U0342_002513"
     CDS             518..970
                     /locus_tag="U0342_002513"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM2423844.1"
                     /translation="MWLDIYREQYPELTIIEDRNMEYAHKGLYINQHILVNPNQNDTE
                     MRCTLAEEIGHYKLTVGNITKQKTINDIKQEKLARNWGYKSLVPLRKIIDAYYEGFTE
                     YYEVSEFLEVTEDFLKHSIEYYRSKFGNTIECNGYIIILRSSIQIIAC"
     gene            1017..1493
                     /locus_tag="U0342_002514"
     CDS             1017..1493
                     /locus_tag="U0342_002514"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423845.1"
                     /translation="MKKIFLIINLLLAFSFALTACGNDDVKSKNTTEKEESTRKNNEK
                     DKLEKSKKSSKKTNLKISDASVITQVQFYIEKYDKIDNVKWSWNSDKYNITKMPAVKS
                     TEDGKSFNDVYSAHGTYSWNDKKYNYAITVNFPNENSSQLISLKTDMGTNIEIPTE"
     gene            1627..2772
                     /locus_tag="U0342_002515"
     CDS             1627..2772
                     /locus_tag="U0342_002515"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917608.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2423846.1"
                     /translation="MDKRIKSYLNSKNEISYMFRVYAGIDNMTGKRKQTTRRGFKTER
                     EAKMELKRIEMQIFEEGGLKTQKKALKFEEVYSTWLELYTQTVKESTLERTKIFFNHH
                     ILPVFSDKFIDKIDIHFCQQVINAWSKSNPTSYKRLKNLTSRVFKYAISLHLIESDPF
                     AFVVVPRGEMIEKEEKDITFYDKYELRSFLDTVKDDTFKYTFFYLLAFTGLRKSEALA
                     LTWNDVDLNNKRLYVNKTLSRGEHARILVNATKTKAGKRDISIDASTVDVLKKWKSYQ
                     RGNHQILRLDKVQIIFDNEGNYYNPSSTYSWLDNIFKHHTELKKITSHGFRHTHASLL
                     FEAGASLKDVQERLGHADIQTTSNIYTHVTQEKKDSTASLFSDFMLK"
     gene            2852..2941
                     /locus_tag="U0342_002516"
     tRNA            2852..2941
                     /locus_tag="U0342_002516"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:2888..2890,aa:Ser,seq:cga)
     gene            complement(3010..3603)
                     /locus_tag="U0342_002517"
     CDS             complement(3010..3603)
                     /locus_tag="U0342_002517"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464164.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2423847.1"
                     /translation="MKHHHNHHGEAGFKRKVDYLDRPERSEVLSPEDFLQAMPIGKTA
                     SILDLGAGTGFLTIPAAKFVDNTVFALDLDAKMLELIESKAKEAGLANVETLEASMDD
                     IPLEANSVDVVLASLVLHEADSLADVLREVSRVVKTGGYFASLEFDTKGTDLKGPPME
                     IQISAEKLKEELAGFGFEVVKNWQLDEGMYVSIAEKK"
     gene            complement(3616..4032)
                     /locus_tag="U0342_002518"
     CDS             complement(3616..4032)
                     /locus_tag="U0342_002518"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464163.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2423848.1"
                     /translation="MKFSKATNYALHTMVYLANLSPEKSVGVKELATKQNVSPTYLSK
                     VLTMLVKAGFIESVTGVNGGYKLAEPASSISFLDVIQAIEGKGAFFHCDPKNHSESQP
                     HCLIGEVMNKAEQQMEDYLSKQTVGSIVVEIEKHQH"
     gene            complement(4137..4841)
                     /locus_tag="U0342_002519"
     CDS             complement(4137..4841)
                     /locus_tag="U0342_002519"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464162.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAD family hydrolase"
                     /protein_id="HEM2423849.1"
                     /translation="MINLIFDIDDTVYDQLKPFENAFKTVFGKADHLKIENLYIKSRF
                     YSDEVYHRVVQGEMPKAAMHVYRITQALNDFDYQITKKEAEAFQHAYEQNQRKIELTS
                     GIKEILTWAKKNEITMGIITNGPKEHQQHKINDLQINDWIPTEHTFISGKVGIEKPDK
                     KIFKLVEEQIGIKGAETYYIGDSFENDVIGSKSAGWKSIWLNRRGHLIPTEAAFQPDY
                     CVENEQQLFAILQEIF"
     gene            complement(4927..>5353)
                     /locus_tag="U0342_002520"
     CDS             complement(4927..>5353)
                     /locus_tag="U0342_002520"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464156.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="isochorismatase family protein"
                     /protein_id="HEM2423850.1"
                     /translation="RKNKIEIVYIRHDDGPNTELTEGKEGFEIYEKFQPTTLERIFDK
                     SVNSAFKGTGLLAYLKEKGTKKIVVAGLQTDFCIDATVKCGFEHGFQMIVPTHANSTE
                     ENHFMSGENSYKYYNEWMWPDRYATCISIEETINEMENN"
BASE COUNT         1768 a          984 c          908 g         1693 t
ORIGIN      
        1 acaagccttc ttaaaagcca taaatcgttg gggaacgagt attatatggg ttatttggtg
       61 tcttgattag ctaaataatt agcttatgaa catagtatag tactctttag aataatagtc
      121 aagtgtttta ttattctttt tcgtactttc atatgtttct ttggagggaa tattgacatg
      181 actacgtttg aaagggtaaa ggtattagca gaaaaacaaa aaatatctct caaagaactg
      241 gcgttaaaat tgaatatggg agaaaatgct atttactcat ggaaagtaaa aacacctggc
      301 gctgacaaat taaaagcagt agcagactac ttcaacgtct ctaccgatta tcttttaggg
      361 cgtactgaca acccgcaaat tggcaaagac atcacagaag aagttgtaac actagccgcg
      421 catattgatc catccgcaac agaagaagac atgaaaaaaa ttcttgagta tattgatttc
      481 attcaacaaa aatataaata agaaatgaga tgaacgtatg tggctagata tatacagaga
      541 gcaatatcca gagctaacta tcatagaaga cagaaacatg gaatatgctc ataagggact
      601 gtatatcaat cagcatattc ttgtaaaccc aaatcagaac gataccgaga tgcgttgcac
      661 attggcagag gagattgggc attacaaatt gactgttggt aacatcacta agcagaaaac
      721 gattaatgac ataaagcaag aaaagcttgc gagaaactgg ggttataaat cattagtccc
      781 cttgcgtaaa attattgatg cttattatga aggttttact gagtactacg aggtttcaga
      841 gtttttagaa gtaactgaag attttttaaa gcattcaatt gaatattata gaagcaagtt
      901 tggaaatacg attgagtgca atggatatat aattattctt agaagtagta tacagattat
      961 tgcttgttag gtatttgcac aaatgtgttt atatagaaat taaatggagg aatgaaatga
     1021 aaaagatatt tttaataatt aatttattgc ttgcatttag cttcgctttg actgcttgtg
     1081 gtaatgatga tgtaaaatca aagaatacta ccgaaaaaga agaaagtact agaaagaaca
     1141 atgaaaaaga taaactagaa aaaagcaaga aatccagtaa gaaaacgaat ctaaaaatat
     1201 ctgacgctag tgttattact caagttcaat tttatattga gaaatacgat aaaattgaca
     1261 atgttaaatg gtcatggaat agcgacaaat ataacattac taaaatgcca gccgtaaagt
     1321 ccacagaaga tggtaaatca tttaatgatg tgtacagtgc acacggaact tattcctgga
     1381 atgataaaaa atataactat gcgattactg tcaatttccc caatgaaaat agttcacaat
     1441 taatttcatt gaaaactgat atgggtacaa atattgaaat accaacagaa tgagtaaaat
     1501 aaacaaaaaa cgccctcccc gcaagagata agcgttttca aatacacaca taggagtatg
     1561 caaattcatt ttaccataat ttgctttacc cttcaaaaga acatacattc ggtcaggagg
     1621 ataaaaatgg ataaacgtat taaatcgtat ttgaattcaa aaaatgaaat tagttatatg
     1681 tttcgagttt acgctggcat agataacatg actggaaaac gaaaacagac tacacgtaga
     1741 ggatttaaaa cagagagaga agctaaaatg gagctaaagc gcattgaaat gcagatattt
     1801 gaagaaggtg gattaaaaac tcaaaaaaag gcgctgaaat ttgaagaagt atattccacg
     1861 tggctagaac tttacacaca aacagtcaaa gaaagcacgt tagaacgcac taaaatattt
     1921 tttaatcatc acatattgcc agtttttagc gataagttta ttgataaaat agacatacac
     1981 ttctgtcagc aagtcataaa tgcatggtca aaatctaatc cgacgtcata taaacgtttg
     2041 aaaaatttaa cttctcgtgt cttcaaatat gctatttcgt tacatttaat agagagtgat
     2101 ccctttgcgt ttgttgttgt acctcgcgga gaaatgatag aaaaagagga aaaagatatt
     2161 acattctatg acaagtatga attacgttcg tttttagata ctgtcaaaga cgacactttc
     2221 aaatatactt ttttctatct gttagctttc acgggattga gaaaatcaga agcgctagcg
     2281 ctgacatgga acgatgtaga tttaaacaat aaacgtttgt atgtaaacaa aactctctca
     2341 cgtggtgagc atgctcgcat tttagtgaat gctactaaaa caaaagctgg aaagagagac
     2401 ataagtatag atgcatctac agttgacgtg ttaaagaaat ggaaaagtta tcagcgtggt
     2461 aatcatcaaa ttttaagatt agataaagta caaatcatat ttgacaatga aggaaattat
     2521 tataatccca gctctactta ttcgtggtta gataacattt ttaaacatca cactgaatta
     2581 aaaaaaataa cttctcacgg cttccgtcac acacacgctt cacttttatt tgaagctggt
     2641 gcttcgctga aagacgtaca agaacgatta ggacatgcag atatacaaac tacatctaat
     2701 atttatacac atgttacgca agaaaagaaa gattccacag cttctctttt ttctgatttt
     2761 atgctaaaat aaaatctgtt gaaattgatt tgatagtcaa aatgatagtc aaaaaatcat
     2821 aaatactctc aaatcgttga tacgactgca tggagaaata cccaagtccg gctgaagggg
     2881 acagactcga aatctgttag gcggtgtatg ccgcgccggg gttcgaatcc ccgtttctcc
     2941 gtagaaataa aaaggttcac gcttaaaaat agctttgatt gctattttta gacgtgaacc
     3001 tttttgctgt tacttcttct ccgcaatact cacatacatt ccctcatcca actgccaatt
     3061 tttcaccact tcaaacccaa atcccgcaag ttcttccttc aatttctccg cagaaatctg
     3121 aatttccatt ggtgggcctt tcaaatcagt ccctttcgtg tcaaattcca aactagcaaa
     3181 gtagccgcca gtcttcacaa ctctactcac ttcgcgcaaa acatctgcga gcgaatctgc
     3241 ttcatgtaac acgagcgatg cgagcacaac atccacggaa tttgcctcaa gtggaatatc
     3301 atccatgctg gcttctaacg tttctacatt agccaaacct gcttccttcg ctttcgactc
     3361 aattaattcc aacattttcg catctaaatc taatgcaaaa actgtattat caacgaattt
     3421 tgcagctgga attgttaaaa atcctgttcc cgctcctaaa tctaaaatac ttgctgtttt
     3481 tccgattggc attgcctgca aaaaatcctc tggcgacagc acttcactcc gctctggtcg
     3541 atccaaataa tctactttcc gcttaaaacc agcttccccg tgatgattat gatgatgttt
     3601 cattttagca ctcctttaat gttgatgttt ttcaatttct acgacaatac tacctactgt
     3661 ttgtttgctt aaataatctt ccatttgttg ctccgcctta ttcatcactt cgccaatcaa
     3721 gcagtgcggc tggctttcgc tgtggttttt agggtcacaa tggaaaaagg cgcccttccc
     3781 ttcaatcgct tgaatgacat caagaaaact aatactactt gctggttccg ctaacttata
     3841 cccaccattg acgcctgtta ctgactcaat aaagccagct ttcactagca tcgtcaacac
     3901 tttagataga taagttggcg acacattttg cttggttgca agttctttca caccgacaga
     3961 cttttctggt gacaaattag ctaaataaac catcgtatgt agtgcataat tggttgcttt
     4021 ggaaaatttc atattttcac cttcttaatt aaagacttaa ccactctata atatctctta
     4081 taatcagaag tgtcaattca taactaaaaa accttttcca aaaatggaaa aaggtcttaa
     4141 aatatctcct gtaaaattgc gaataattgt tgctcatttt caacacaata atctggctga
     4201 aatgctgcct ctgttggtat caaatgtcct cgtctattca accaaattga tttccaacca
     4261 gcactttttg aaccgataac atcattttcg aaagaatcgc caatataata ggtttcggca
     4321 cccttaatac cgatttgttc ttctactagc ttaaatattt tcttgtctgg tttttcgata
     4381 ccgactttac cagaaatgaa cgtgtgctcg gttggaatcc aatcattgat ttgtaaatca
     4441 tttattttat gttgttgatg ttcttttggt ccgtttgtaa tgattcccat cgtgatttcg
     4501 ttctttttcg cccatgtgag aatttcttta atccctgacg taagttcgat tttgcgttgg
     4561 ttttgttcgt aggcgtgttg aaaggcttct gcttcttttt tagtaatttg ataatcaaaa
     4621 tcatttagcg cctgcgtaat ccggtaaacg tgcattgctg ctttcggcat ttcgccttgg
     4681 acaacgcggt gatacacttc atcactataa aatcgacttt taatatataa attttcgatt
     4741 ttcaggtggt ccgcttttcc aaaaacagtt ttaaatgcgt tttcaaatgg ttttaattgg
     4801 tcataaactg tgtcatcaat atcaaaaatt aaattaatca tcatttcctc ctgcaaaatt
     4861 cactcctttt actctaccat taaatcaaaa aagtaggaag agcctaagcg taatgcttag
     4921 actctcttag ttattttcca tttcattaat tgtttcttct atagatatgc aggtcgcgta
     4981 acgatcaggc cacatccatt cattataata cttgtaacta ttctcccccg acataaagtg
     5041 gttttcttcc gtcgaattgg cgtgggtggg aacaatcatc tggaagccat gttcaaaacc
     5101 acatttcact gtggcgtcaa tgcaaaaatc ggtttgcaat cctgctacta caattttctt
     5161 cgttcctttt tctttgagat aagcaagtaa gcctgttcct ttaaaagcgc tattaacgct
     5221 tttatcaaaa attctttcga gtgtggttgg ttggaatttt tcgtaaattt cgaagccttc
     5281 ttttccttct gtaagttctg tattaggtcc gtcgtcatgt cgtatataaa ctatttctat
     5341 tttatttttt cga
//
LOCUS       DASEAA010000179         5243 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.179, whole genome shotgun sequence.
ACCESSION   DASEAA010000179 DASEAA010000000
VERSION     DASEAA010000179.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5243)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5243)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5243
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.179"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..283
                     /locus_tag="U0342_002521"
     CDS             <1..283
                     /locus_tag="U0342_002521"
                     /inference="COORDINATES: protein motif:HMM:NF014566.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM2423851.1"
                     /translation="SPVVEEYINRYILFLLPLKILRKSIPYFQRNWGVFFIAMISSLI
                     FAVFHGEQFLWPYLAMGLIYCWVSYQSNFWGSILLHISNNLLFFVLNMI"
     gene            310..675
                     /locus_tag="U0342_002522"
     CDS             310..675
                     /locus_tag="U0342_002522"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423852.1"
                     /translation="MSENNIDSVVEELLVKAVEENPTLNIRNANKGALTALSKISSAI
                     KSDGFEKSLRISGDAVTLIKLEKDINDLTKHKAVLGKGKGFYENEWHLDVPFVEKGKE
                     TSFKEHSNFIDTRNSQIQR"
     gene            697..2838
                     /gene="topB"
                     /locus_tag="U0342_002523"
     CDS             697..2838
                     /gene="topB"
                     /locus_tag="U0342_002523"
                     /EC_number="5.6.2.1"
                     /inference="COORDINATES: protein motif:HMM:TIGR01056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA topoisomerase III"
                     /protein_id="HEM2423853.1"
                     /translation="MKTVILAEKPSQAKEYASAMEMHSIKKGYIEIKDKLFPEGAIVT
                     YGFGHLVELCLPGDYGEEYNKWSLANLPIFPEMKYRVAKDKIEQFSIVKGHLQKATQI
                     IIATDCDREGELIAWLIINQAGIKRNEKKIDRLWINSLEKEAIRKGFKSLKSANETYD
                     KFLEAQTRQKSDWLVGMNLSPLYTLTLQEKGVQGVFPIGRVQTPTLMMVYKRQQAIEN
                     FISKKYFEVELRGNQNNNQWTAKLKEKQQFDSKESCKKFLENGKLKEGNQNVLVANIQ
                     KEMKETKSPRLFSLSALQVVMSKKEKVSPKKVLESVQKLYEKKLLTYPRTDSVYITEN
                     ELEYLLSLKESYQKLFSINQHLDHVDKKTRFVNSKKVQEHHAIIPTKKIPSQTDLKSL
                     TDLERNIYELVTRTTLAMFAETYQYEETTVDLVSNNVAFVAKGKVEKLLGWKSILNDV
                     IEKETEEFTLPSLELDTFIEMDLQVISKDTKPPKSFTEGTLIQAMKTAGKELENEEAQ
                     SILKDVEGIGTEATRADVIEKLKSQDYINVVKNQLEVTKKGKQIGKVLESDKLFSSAE
                     MTAVWEKDLKSISEDALTQDVFLKRIKHLVKSYIKQVPQNLANISKGTEWQEMQKAQS
                     VGVCPNCGKDIVDRGKMYGCVGYKDKPSCSFTLMKKIMGKTLPQKDVSLLLSDGSTRT
                     IKGFVSKKGNKFDAQLKWDKDKITFVFPNKK"
     gene            2890..3090
                     /locus_tag="U0342_002524"
     CDS             2890..3090
                     /locus_tag="U0342_002524"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423854.1"
                     /translation="MTLCLLVEVNADFSEAVLFDIEKQENTTVLLSKNDYESLSTITA
                     STDEEIFLEIDMFKKQIVWNNQ"
     gene            3107..4189
                     /locus_tag="U0342_002525"
     CDS             3107..4189
                     /locus_tag="U0342_002525"
                     /inference="COORDINATES: protein motif:HMM:NF037521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423855.1"
                     /translation="MKKATYQLKSREEKELEVQDLMDSMYKKMEGYTTNVDQVKEYLN
                     FMSNFYKYSSRNQQLIQTQYPGAQGVGSFAFFKEKGFSVRKGEKGIKIFVPMRMKMFD
                     RNGAMEYISHATQEEKKKIKSGEIYSVERTHFKLSSVFDITQTNAKVSDYPSLFPNRI
                     QEFKVENNDLREVKQVLENIADGRGIQLNTVDSLGAVKGNFTQYLNTETNEIKKIINL
                     NGKNTPSEEIQVFVHELAHERLHNYERLQNENKNGGSITYSTEVKELQAEMTSYIVCH
                     HIGMDTEDFSLPYIANWTKNGDEIEDKIAVLKEVKNASSDLIEEINNELDRSKNKDLS
                     IENSYSVEKENNQQGYYTPNSAALSR"
     gene            4276..>5243
                     /locus_tag="U0342_002526"
     CDS             4276..>5243
                     /locus_tag="U0342_002526"
                     /inference="COORDINATES: protein motif:HMM:NF024554.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toprim domain-containing protein"
                     /protein_id="HEM2423856.1"
                     /translation="MTEIEKKAFIRKNIKEFKDADEMLTELKARAHGRYFLCTCPSCQ
                     HHEAYMYKDKMNLIFCNRQNECGETTRVILTENDNTSDLQEKYKDKNEKKWLSKAEKE
                     ELKILTANIRYFIDGNASFDMEKGETFRGISRGVYQNHLLVTPDLKFGNRLLNAFPLL
                     MRRYGQSEESIKRFENRDVVIPFFDEKGQVDRLLLRSTSPDVEYSNEYPKEIHCIVQY
                     QKQEVKNFQHNLTKEGVSPILISETLINALSVKEIDHDVEFIAATGVNHVRQMKEYIL
                     ENKEIFQERGVVLAFDPDKAGNLAKEKLKTILSNENIPTRDFPYDN"
BASE COUNT         2069 a          635 c         1008 g         1531 t
ORIGIN      
        1 atctcccgtc gtagaagaat atatcaatag atatattctt tttttattgc ctttaaaaat
       61 tctgagaaaa agtattcctt acttccaaag aaattggggt gtgtttttta tagctatgat
      121 cagtagttta atattcgctg tttttcatgg agagcaattt ttatggccat atttagcgat
      181 gggattaatt tactgctggg tttcttatca atctaacttt tggggaagta ttcttttgca
      241 tattagtaat aacttgttgt tttttgtatt aaacatgatt tgaagaattt aaagaatagg
      301 tgggtttata tgtcggaaaa taatattgat tcagtagtag aggaattact agttaaagca
      361 gtagaagaaa atcctactct aaatattaga aatgcaaata aaggtgcatt aacagctttg
      421 tctaaaatat caagtgctat aaaaagtgac ggatttgaaa agtcattgag gatttctggc
      481 gatgcagtaa ctttgattaa actagaaaaa gatattaatg atttaacaaa acataaagcg
      541 gtattgggta aaggtaaggg cttctatgaa aatgaatggc atttagatgt accttttgtt
      601 gaaaaaggaa aagaaactag ttttaaagag catagtaatt ttattgatac aagaaattct
      661 caaatacaac gataagataa tagaggagag aatataatga aaacagttat tttagcagaa
      721 aaaccaagtc aggcaaaaga atatgcgtct gcgatggaaa tgcattctat taaaaaagga
      781 tatattgaaa ttaaagataa attatttcct gagggtgcaa tagtaacata tggatttggg
      841 cacttagttg aactctgttt accaggagat tatggagaag agtataataa atggtcatta
      901 gctaatctgc ctatttttcc cgaaatgaaa tatagagtag caaaagataa aattgaacaa
      961 ttttcaattg taaaaggtca tcttcaaaag gcgactcaaa ttattattgc tacagattgt
     1021 gatcgtgaag gtgaattgat tgcatggctt ataattaacc aagcaggtat taaaagaaat
     1081 gagaagaaaa tagatcggtt atggattaat tctttagaaa aagaagcgat taggaaaggt
     1141 tttaaatcat taaaaagtgc aaatgaaacg tatgataaat tcttggaagc acagacaaga
     1201 caaaaaagtg attggcttgt aggcatgaac ttatctccgt tatatacatt gactttacaa
     1261 gaaaaaggtg tacagggtgt ttttccaatt ggccgtgtgc aaactccaac gttaatgatg
     1321 gtttataaac ggcaacaagc gattgaaaat tttataagca aaaaatactt tgaagttgaa
     1381 ctaagaggca atcaaaataa taatcaatgg acagcaaaac taaaagaaaa acaacaattt
     1441 gatagtaagg aaagttgtaa aaaattttta gagaatggaa aattaaaaga aggtaatcaa
     1501 aatgtgctag tagctaatat tcaaaaagaa atgaaagaaa cgaagagccc acgcctattt
     1561 tcgttaagtg cattgcaagt agttatgagt aagaaagaaa aagtatcacc aaaaaaagtt
     1621 ttagaatctg ttcaaaaatt gtacgaaaaa aaattactca catatcctcg aacagattca
     1681 gtttatatta ctgaaaatga actagaatat ttgttatcac tgaaagagtc ttaccaaaaa
     1741 cttttttcta ttaatcagca tttagatcat gttgataaga aaacaagatt tgtgaattct
     1801 aaaaaagttc aggaacatca cgcaattatt cctactaaaa agattccatc acaaacagat
     1861 ctaaaatcgt tgacagattt agaaagaaac atctatgaat tagtgacacg aacaacttta
     1921 gctatgtttg ctgaaacata tcaatatgaa gaaaccactg tagacttggt aagtaataat
     1981 gttgcttttg tagcaaaagg caaagtggaa aaattactag gttggaagag tattttaaat
     2041 gatgtgatag agaaagaaac agaggagttt acacttccgt ctctagagtt agatacgttt
     2101 attgaaatgg acttacaagt gatatctaag gatactaagc caccaaaatc atttactgaa
     2161 ggcactctaa ttcaggcgat gaaaacagct ggaaaggaac ttgaaaatga agaagcacag
     2221 tcaattttaa aagatgttga aggaattgga acggaagcta ctagagcgga tgttattgaa
     2281 aaattaaaat cacaagatta cattaatgtt gtgaaaaatc aattagaagt taccaaaaaa
     2341 ggcaaacaga ttggaaaagt acttgaaagt gataaattgt ttagtagtgc agaaatgact
     2401 gctgtttggg aaaaagattt aaaatcaatt agtgaggacg ccctcacaca agatgttttt
     2461 ttaaagagaa ttaaacactt agttaaatca tatataaaac aagttccgca aaatttggcc
     2521 aatattagta agggaactga atggcaagaa atgcaaaagg cgcaaagtgt tggtgtatgc
     2581 ccgaactgcg gaaaggatat tgttgataga ggaaaaatgt atggttgcgt tggttacaaa
     2641 gataaacctt cttgttcatt taccctaatg aaaaaaataa tggggaaaac attaccacaa
     2701 aaagatgtgt cacttctttt aagtgatggg tctacacgaa ctataaaagg atttgtaagt
     2761 aaaaaaggaa acaaatttga tgcacagcta aagtgggata aagataaaat tacttttgtc
     2821 tttccaaata agaaatgatc agtaaagcct cttattatag gggctttttt gttgaaagga
     2881 ggtgaaatta tgactttatg tttattagtt gaagtaaatg cagatttttc agaagctgtt
     2941 ttatttgata tcgagaagca agaaaataca acagtcttat tgtcaaagaa tgactatgaa
     3001 tcattatcaa caattacagc atcgactgat gaagaaatat tcttagaaat tgatatgttt
     3061 aagaagcaaa ttgtatggaa taaccaatga aaggagcaaa atttatatga aaaaggcgac
     3121 gtatcagctt aaatcaagag aagagaaaga gctagaagta caagatttaa tggatagcat
     3181 gtacaaaaaa atggaaggct atacaactaa tgtagatcaa gttaaagaat atttaaactt
     3241 tatgagtaat ttctacaaat attcttcacg caatcaacag cttattcaaa cacagtatcc
     3301 tggagcgcag ggtgttggtt cttttgcatt ttttaaggaa aaaggttttt ctgttcgtaa
     3361 aggtgaaaaa ggaattaaaa tttttgttcc aatgcgaatg aaaatgtttg acagaaacgg
     3421 agcgatggaa tatataagcc atgctacgca agaagaaaag aaaaaaatta aaagtggaga
     3481 gatttattct gtagaaagaa ctcattttaa gctatcgtct gtttttgata ttactcagac
     3541 aaatgcaaaa gttagtgatt atccaagtct ttttccaaac agaatccaag aattcaaggt
     3601 cgagaacaac gatttaagag aagtaaagca ggttcttgag aatattgcag atggaagagg
     3661 tatacagctc aatacagttg atagtctagg cgcggtgaag ggtaacttca cacagtattt
     3721 aaacacagag acaaacgaga ttaaaaaaat aattaatctg aatggaaaaa atacgccttc
     3781 agaagaaata caagtatttg tgcatgaatt agcacatgaa cgtctgcata attatgaacg
     3841 attacagaat gaaaataaaa atggtggaag cataacatat tcaactgaag tgaaggaact
     3901 tcaagcagag atgacatctt atattgtttg tcaccatatt ggaatggata cagaggattt
     3961 ttcattacca tatattgcaa attggacgaa aaatggagat gaaattgagg ataaaattgc
     4021 agtattaaag gaagtaaaga atgcatcatc tgatctaatt gaagaaatta ataatgagct
     4081 tgatagatcg aaaaataaag atcttagtat tgaaaattct tattctgttg aaaaagaaaa
     4141 taatcaacaa ggctattata caccaaacag cgctgcactt agtagataga gaaacgaata
     4201 gaagaattat gatgtaatgg ggcttctcgg tgaggagtcc tatttatatt gatttttgaa
     4261 aggagtagtg taaagatgac tgaaattgaa aagaaagctt ttatacgtaa gaatataaaa
     4321 gagtttaaag atgcagatga aatgctgaca gagttaaaag ctagagctca tggaaggtat
     4381 tttttatgta catgcccatc gtgtcagcat catgaggcgt atatgtacaa agataaaatg
     4441 aatttaattt tttgcaatag acaaaacgaa tgcggagaaa caacaagagt aatactgaca
     4501 gaaaatgata acactagtga tcttcaagag aaatataaag ataagaatga aaaaaaatgg
     4561 ctttctaaag ctgagaaaga agaattaaaa attttaactg caaatatacg ttattttatt
     4621 gatggcaacg cttcttttga tatggaaaaa ggagaaactt tccggggtat tagtcgaggt
     4681 gtttatcaaa atcatttact ggtaactcca gatttaaaat ttggtaaccg tcttcttaat
     4741 gcgtttccat tgctcatgag gcgttatggc caatcagaag aatctattaa acgttttgaa
     4801 aatagagatg ttgttattcc gttttttgat gaaaaagggc aggtagatcg cttattatta
     4861 cgatcaactt ctccagacgt agaatatagt aatgaatatc caaaagaaat tcattgtatt
     4921 gtgcaatatc aaaagcaaga agttaaaaat tttcaacaca atttaactaa agaaggggta
     4981 tccccaatcc tgatatctga aactcttata aatgctcttt ctgttaaaga aattgatcat
     5041 gatgtagagt ttattgctgc tactggggtt aatcacgtgc gacaaatgaa agagtatatt
     5101 ctcgaaaata aggaaatatt tcaggaaaga ggagttgttt tagcatttga tcctgataaa
     5161 gctggcaatt tagcaaaaga aaaattgaaa acaattttaa gtaatgaaaa tataccaact
     5221 cgtgattttc cctatgataa tga
//
LOCUS       DASEAA010000180         5228 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.180, whole genome shotgun sequence.
ACCESSION   DASEAA010000180 DASEAA010000000
VERSION     DASEAA010000180.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5228)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5228)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5228
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.180"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..392
                     /locus_tag="U0342_002527"
     CDS             <1..392
                     /locus_tag="U0342_002527"
                     /inference="COORDINATES: protein motif:HMM:NF018914.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DnaD domain protein"
                     /protein_id="HEM2423857.1"
                     /translation="SNNNLTSELEERERRAAAEIPIDLNVSPLITYEGSLGLLNTFQR
                     EDLFHWESELSRPIVNFAIYHASMRGARGYPLIKDILCKWHQNNIKNLSEAVAFEKEQ
                     KSKAQIKGGAYVRGGKRTNQQNQNFDW"
     gene            340..1161
                     /locus_tag="U0342_002528"
     CDS             340..1161
                     /locus_tag="U0342_002528"
                     /inference="COORDINATES: protein motif:HMM:NF013828.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEM2423858.1"
                     /translation="MSVEENEPINKIKISTGDREPLTFGNIQFVENRTCRDCGNEYPV
                     YSRNGIEADFCINCDNNRVQKDMQKRYEETERQRPNRLMKEFSFVPDEIKSQSFKTFK
                     PETTEEHEALQQVLHFVKSFPNDQTLVLAGSVGTGKTHLAYSAAREIIKKGYIVIFVT
                     VPELLESIRSTFKNADLSETEVKRIYKEADLLILDDIGAEYIKDYGNGSWAAEIIFDI
                     VNARTTKSTIYTTNLAGKDIEEHYGGIQGKRIVSRMKKNSTAIKLTGKDRRTSEW"
     gene            1161..1352
                     /locus_tag="U0342_002529"
     CDS             1161..1352
                     /locus_tag="U0342_002529"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731484.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423859.1"
                     /translation="MVEATQVEYIGFSGPEAAHVIIWKLLDKKIAKTMCYTAEEVEEQ
                     LKLHAWKFDGYEVLSDENF"
     gene            1339..1560
                     /locus_tag="U0342_002530"
     CDS             1339..1560
                     /locus_tag="U0342_002530"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731485.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423860.1"
                     /translation="MKTFKIWLKIYWISGLCQNRSFEVEARTFKEAFDNAEKMVPRKK
                     VKKIKHLQGDIVGYIFEPPTKGANNFETN"
     gene            1517..1756
                     /locus_tag="U0342_002531"
     CDS             1517..1756
                     /locus_tag="U0342_002531"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423861.1"
                     /translation="MSRQRKELIILKRIEYVEIIKKIPGTPFRLGGIYEIERMGSANA
                     RVRINNSIYQVPKEALQVVEQVERERWEENDKIHD"
     gene            1737..2174
                     /locus_tag="U0342_002532"
     CDS             1737..2174
                     /locus_tag="U0342_002532"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RusA family crossover junction
                     endodeoxyribonuclease"
                     /protein_id="HEM2423862.1"
                     /translation="MIKFTINIPPHPQERPRFRNAGNFVQTYDPPKSKEYKKKIANVA
                     KMYAPGTPISTPIKIKLIFFVPIPKSKSKAWKQRAVLGQEFPAVRPDIDNFTKAVLDA
                     LNGIMFSDDGKIVELIAYKRYSDLPRTEVSITELVSEVQTKLF"
     gene            2195..2815
                     /locus_tag="U0342_002533"
     CDS             2195..2815
                     /locus_tag="U0342_002533"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423863.1"
                     /translation="MINCYAEVRNVQVKPNDTVEIKLVVGVEELSGQNEELMKLVGRE
                     VNTSLESNQISYREKVDPETREPVLKYIVHKDGTVAMYSQEKLDLELEELPEEERSSV
                     INKSEIDEYILACDSGPMTIPGGIFEGKEVLQKLSEGEDIEDLAKFYGTPVKEMQDTL
                     DEYRKFVAAKAKAWQEWKNNSEQTADSEEQESENDGQATLEFETEE"
     gene            2856..3236
                     /locus_tag="U0342_002534"
     CDS             2856..3236
                     /locus_tag="U0342_002534"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731489.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423864.1"
                     /translation="MPSEELNLFDLMDYYPEQAAKKKRKEEALKPIKTHRNDRIDYPA
                     ARAEIERILGKKVTTVCGYYDHPINKELRWIFNFEIGFCYINDKCQLYEMQPGLEGFR
                     YRGKVHEEVFYNADDRKRATTTIE"
     gene            3196..3372
                     /locus_tag="U0342_002535"
     CDS             3196..3372
                     /locus_tag="U0342_002535"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423865.1"
                     /translation="MQTIEKELLQRLSDRRIGVQHQIASLVHTEKCTLLEALKMTDKE
                     IDSTFNEMRMELDS"
     gene            3384..3806
                     /locus_tag="U0342_002536"
     CDS             3384..3806
                     /locus_tag="U0342_002536"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423866.1"
                     /translation="MTTVEKLSIREQALNKMLTEMNEAHSGAEDVIHNWLCNQVEEAI
                     FEGIMKDDRSISGAVKYCSSRASKHQAEGVAMIDDKTVFSWVRKYFISEKVSKSIVKA
                     TVKATATKPEKTKVKAKKKPKKTTAQEGYEQLDLLDFL"
     gene            3803..5164
                     /locus_tag="U0342_002537"
     CDS             3803..5164
                     /locus_tag="U0342_002537"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PcfJ domain-containing protein"
                     /protein_id="HEM2423867.1"
                     /translation="MKREAQNYIDNKLKPPKAFFEWCFSQIPTYKWSNKKETILASNR
                     KNCSVIEQKLRKNSRLTFFGKLNVFGIVLVTSKRIEIQSYAFWNRVVEGKEIIEFDLV
                     NFEQFAEGEHVKVASSDGKMWFGLIPVYGGMSGGPYSMIQLFENDWKEKIRSKSELKY
                     LEIPHLDFKEIETIYKYRVEIEFLQKIKARQLAKEVMYPVTQYTNGSFRKTVDMRTIN
                     AKWLKENKPFFKNSDRGFMEFELARRIQKRRGKVVSGIEKYLDYRAINKIPEGVGIVR
                     FQNWIIKNKVDFSYYLDYLNLMRDLNIAIDSENIIMPKNLVIAHDNAVKLLYQMKHEV
                     EEQQYKVRFEKIKDLEKTIDNYAFIVPKQASDLLTEGKALSHCVGGSNYIKQHIEGKT
                     TIIFVRDKQDLEKSFYTLEYKNGQIYQLRGKHNCDPTKDVQEAANKWAKLLKSKTKVL
                     QHS"
BASE COUNT         1976 a          778 c         1154 g         1320 t
ORIGIN      
        1 atagtaataa taacttaact agtgaactag aagaaagaga gcggcgagca gcagcagaaa
       61 tccctattga tttaaatgta tctcccttaa tcacctacga aggtagtcta ggtctattaa
      121 atacttttca aagagaggat ttatttcact gggaatcgga gttaagtcga ccgatagtca
      181 attttgctat ttaccacgca agtatgagag gcgcacgtgg gtatccgttg ataaaagaca
      241 tcctgtgcaa atggcatcaa aataatataa aaaatctttc agaggctgtc gcatttgaaa
      301 aggaacaaaa aagtaaagca caaataaaag gtggtgctta tgtccgtgga ggaaaacgaa
      361 ccaatcaaca aaatcaaaat ttcgactggt gatagagagc cactgacttt cggaaacatc
      421 caatttgtag aaaataggac ttgtagggat tgtggaaatg aataccccgt ttactcaaga
      481 aatggcattg aagcagattt ttgcatcaat tgtgacaata atcgagttca aaaagatatg
      541 cagaaacgct acgaagagac agagagacag cgacctaaca gactgatgaa agaattttct
      601 ttcgttcctg atgagatcaa atcgcaatct tttaaaacat ttaaaccaga aacgacagag
      661 gagcatgaag ctttgcaaca agttcttcat tttgtaaagt catttcctaa tgatcagact
      721 ttagtgctag ctggttctgt aggaactggt aaaactcatt tagcatattc tgcagcaaga
      781 gaaatcataa aaaaaggtta catcgtcatt tttgttaccg ttccagaatt gttggaaagt
      841 attcgttcca cttttaaaaa cgcagacctt tcagaaacgg aggtaaaacg aatttataaa
      901 gaagctgatt tactgatttt agacgacatt ggggctgaat atattaaaga ctacggaaac
      961 ggtagctggg cagcagaaat aatattcgat attgtgaacg ctcggacaac gaagtcgacg
     1021 atttacacta caaatttggc aggaaaagat attgaggaac attacggtgg cattcaagga
     1081 aaacgaattg tatcccgtat gaagaagaat agtacagcaa taaaattaac tggcaaggat
     1141 aggaggacaa gtgaatggta atggttgaag caacacaagt agaatatatt ggcttttctg
     1201 gtccggaagc ggcgcacgtt attatctgga agctattaga caagaaaata gcgaaaacga
     1261 tgtgctacac ggccgaagaa gtcgaagagc agctaaagct gcacgcttgg aaatttgatg
     1321 gttatgaggt cttgagtgat gaaaactttt aagatctggc tgaaaatcta ctggatttct
     1381 ggcctttgtc aaaatagaag ttttgaggta gaagctagaa ctttcaaaga agcatttgat
     1441 aatgcagaaa aaatggttcc acggaaaaaa gtgaagaaaa taaaacatct gcagggagat
     1501 attgtaggtt acatttttga gccgccaacg aaaggagcta ataattttga aacgaattga
     1561 gtacgttgaa atcattaaaa aaattcccgg gacacctttt agattaggag ggatatacga
     1621 aatagaacga atgggttcag caaatgcacg tgtgagaatt aacaacagta tttatcaggt
     1681 gccaaaagaa gcactacaag tagttgaaca agtggaacgt gaacggtggg aagaaaatga
     1741 taaaattcac gattaatatt cctccacatc cacaagaacg accgcgtttt agaaatgcag
     1801 gcaatttcgt acaaacgtac gacccgccta agtcaaaaga gtacaaaaag aaaatagcaa
     1861 atgtggcaaa aatgtatgcg ccaggaacgc caataagcac gcctattaaa ataaaattaa
     1921 ttttctttgt gccaatccct aaatcaaaat ctaaagcctg gaagcagcga gcggtccttg
     1981 gccaagagtt tccagctgta aggccagata ttgataattt cacaaaggct gtgctagacg
     2041 cattaaacgg catcatgttt agtgacgatg gaaagattgt tgaattaatc gcttataaga
     2101 gatattcaga cttacctaga acggaagtta gcataacaga attagtttca gaagttcaaa
     2161 cgaaattatt ttaaaaaaat tggaggaaca agaaatgatt aattgctacg cagaggttag
     2221 aaatgtacag gtgaaaccga atgacacggt tgaaattaaa ctagttgttg gtgtagaaga
     2281 attatctggc caaaacgagg aacttatgaa gctcgtaggt agagaagtaa atacttctct
     2341 cgaaagcaac caaatatctt accgtgaaaa ggttgatcca gaaacacgag agcctgttct
     2401 taagtatatt gttcacaagg acgggactgt agcgatgtac tcgcaggaaa agcttgattt
     2461 agaattagaa gaattgcccg aagaagagcg ttctagcgtg ataaacaaat cagagattga
     2521 tgaatatatt ctcgcttgtg atagcggacc tatgaccatt cctggaggga tttttgaagg
     2581 gaaagaagtg cttcaaaaat tatcagaggg tgaagacata gaggatttgg ctaagtttta
     2641 tggaacgccg gttaaagaaa tgcaagacac tttagatgaa tatcgtaaat tcgtagctgc
     2701 caaagcaaaa gcgtggcaag aatggaaaaa taattctgaa caaacagctg atagtgaaga
     2761 acaagaatct gaaaatgatg gtcaagcaac tttagagttt gaaaccgaag aataaaatgc
     2821 tgggcgggaa accgcccttg taaagaggtg aggaaatgcc atcagaagaa ttaaatttat
     2881 tcgatttaat ggattactat cctgagcagg ctgctaaaaa aaagcgaaag gaagaagcct
     2941 taaaaccgat taaaactcat agaaacgata gaatagatta tcctgcggca agagccgaaa
     3001 tagagcggat tttaggtaag aaagtaacta cggtttgcgg atattatgat caccctatta
     3061 ataaagaact tcgttggatt ttcaattttg aaataggatt ttgctacatc aatgataaat
     3121 gtcaactata cgaaatgcaa ccgggtttag aagggtttcg atatcgcggg aaagtacatg
     3181 aggaggtttt ctataatgca gacgatagaa aaagagctac tacaacgatt gagtgataga
     3241 agaataggag ttcaacatca gattgcttca cttgtgcata cagagaagtg cacgttgcta
     3301 gaagctttaa aaatgacaga taaagaaatc gattcaacat ttaatgaaat gcgaatggag
     3361 ctagatagtt aggaggatga ataatgacaa ctgttgaaaa gttaagcata agagagcaag
     3421 cgctcaataa aatgttaacg gaaatgaatg aagcacattc cggagccgag gatgtgatac
     3481 ataactggct ctgtaatcaa gtagaagaag cgatttttga aggcattatg aaagatgata
     3541 gaagtattag tggggcggtt aaatactgct cctcaagggc ttcaaagcat caggcggaag
     3601 gtgtggccat gattgatgac aaaactgtct tttcctgggt gagaaagtat tttatatcag
     3661 aaaaagtgtc gaaaagtatt gtaaaggcta cagttaaagc aactgcaaca aaaccagaaa
     3721 aaacgaaagt taaagctaag aaaaaaccga aaaaaacaac tgcgcaagaa gggtatgagc
     3781 aattagattt gcttgatttc ttatgaagag agaagcgcaa aactatattg ataataaatt
     3841 aaaaccacca aaagcgttct ttgaatggtg tttctcacaa attccaactt acaagtggtc
     3901 caacaaaaaa gaaactattc tagcttccaa tcgaaaaaac tgcagtgtta ttgaacagaa
     3961 gttaagaaaa aactctagat tgacattttt tggtaaattg aacgtgttcg gtattgtctt
     4021 agttacatcg aaaagaattg agatacaaag ttacgcgttc tggaatcgag tagtggaagg
     4081 aaaagaaata attgaatttg atctagtcaa ttttgaacaa tttgctgaag gggaacacgt
     4141 aaaggttgca agtagcgacg gcaagatgtg gtttggttta attccagtat acggtgggat
     4201 gtctggcgga ccttactcaa tgattcagtt gtttgaaaat gactggaaag aaaaaattcg
     4261 aagtaaatca gagcttaagt acctagaaat cccgcactta gactttaaag aaattgaaac
     4321 tatatataaa tatagagttg aaattgaatt tttgcagaaa attaaagcaa gacaattggc
     4381 caaggaagtt atgtatcccg taacacaata tacaaatgga tcgtttagaa aaacggtaga
     4441 catgcgaaca attaatgcga agtggttgaa agaaaacaag cccttcttta agaattcgga
     4501 cagaggtttt atggaatttg aattagcaag aagaatacag aagcggcgag gaaaggtagt
     4561 ttctggaatt gaaaaatatc ttgattaccg tgctatcaac aaaatcccag aaggagtagg
     4621 aatagttcgc tttcagaatt ggattattaa gaataaagtg gattttagct actacctaga
     4681 ttatctaaac ctaatgcgag acttaaatat tgcaatcgat agcgaaaaca taattatgcc
     4741 taaaaattta gtaatagctc atgataacgc ggtcaaatta ctgtaccaaa tgaaacatga
     4801 agttgaagaa caacaatata aagtgcgatt tgagaagata aaagacttag aaaaaacgat
     4861 agataattac gcttttattg tacctaagca agcatcggac ttattaacag aaggcaaagc
     4921 attaagccat tgcgtaggcg gtagtaatta tattaaacaa cacattgaag ggaaaacaac
     4981 gattattttt gttcgtgata agcaggactt agaaaagtct ttttatacgc tcgaatataa
     5041 aaatggccaa atttaccaac tgcgagggaa gcataattgt gacccaacta aggacgtgca
     5101 agaggctgca aataagtggg ctaaattact aaaaagtaaa acaaaagtat tacagcatag
     5161 ttgaaatagg agggtgaagc atgagagaga gtgagtttag aggtaaacga atagacaaca
     5221 gagaatgg
//
LOCUS       DASEAA010000181         5119 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.181, whole genome shotgun sequence.
ACCESSION   DASEAA010000181 DASEAA010000000
VERSION     DASEAA010000181.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 5119)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 5119)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..5119
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.181"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            328..2619
                     /locus_tag="U0342_002538"
     CDS             328..2619
                     /locus_tag="U0342_002538"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465679.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleoside-diphosphate reductase subunit
                     alpha"
                     /protein_id="HEM2423868.1"
                     /translation="MKWGLQMTTYIVKDGGNRKLPFDKSRLDGYLEKIHEEFPKLDLE
                     DYKRKVFNFVEKKEDYAADELVDYLIREAEARTDIHIPEWEHFAARLYLNKLYKKASK
                     NRFYNDDDKYGSYVGLQESLGERGIYSGNILKNYSKEDLIAAGKLIDPEKDKLFTYNG
                     LYLLATRYLATDSERNVYELPQERWLTIALYLMQNEPKEKRMKLVEEAYWALSNLYMT
                     VATPTLANAGKVGGQLSSCFIDTVDDSLQGIYDSNTDVARVSKHGGGVGAYLGYVRST
                     GAAIRGVKGASGGVIPWIKQLNNTAVSVDQLGQRKGAIAVYLDVFHKDIESFLDLRLN
                     NGDQRLRAHDVFTAVCIPDIFMEAVERRGEWYLFDPHEVKAKKGWYLQDFYDESKGEG
                     TFREKYEELVADETISKKIVKAIDIMKRIMMSQLETGNPFMFYRDEVNRMNPNKHEGM
                     VYSSNLCTEIMQNMSPTKMIQEIISGDQIVITKQAGDFVVCNLSSVNLGRAVVAEEGT
                     LERLIEVEVRMLDNVIDLNELPVPQATITNQKYRSIGLGTFGWHHLLALKNIAWDSEE
                     AEKYADELYEQINYLAIRASNKLAQEKGAYKVFKGSDWNTGEYFARRNYNSPEWQELA
                     KEVAEKGLRNAYLVAVAPNMSTAQIAGSTASIDPIYSAFYYEEKKDYRRPVIAPDLNL
                     STYPYYEKGAYKVDQFASVRQNGRRQRHVDQSLSFNFYVPSGIKASKLLELHMTAWNE
                     GLKTTYYVRSNDIDVEECEWCSS"
     gene            2675..3724
                     /locus_tag="U0342_002539"
     CDS             2675..3724
                     /locus_tag="U0342_002539"
                     /EC_number="1.17.4.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465678.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonucleotide-diphosphate reductase subunit
                     beta"
                     /protein_id="HEM2423869.1"
                     /translation="MANQKEQLTRIKILEPLFPNRSTSIINGETSGILNWNDIPYPSF
                     YRAYKELSTNYWIPDEVDMKSDAKQYPALSEQEKYAFDAIIGLLATLDSPQTRFIYNI
                     AEYITDPAVHANAAIIAQQEVIHNESYSYVLASITNLQEQNRVFELARTHPTIIKRNE
                     PIMDAYDDFMNNKTGETLVKALIQSSILEGINFYSGFAYFYNLVRQNKMTGTGKIISF
                     INRDELAHSKFISEVIRAILGENPELQTEELVEYTHDAFRHAVELETEWSEEVLQGIE
                     GIDVEEMVDYVKYRANKMLGMLGIPELYPGHSDNTMTWIKAYADNFTETKTDFFEMRN
                     SSYKKTNMDNGFDDL"
     gene            3721..4158
                     /locus_tag="U0342_002540"
     CDS             3721..4158
                     /locus_tag="U0342_002540"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465677.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="flavodoxin"
                     /protein_id="HEM2423870.1"
                     /translation="MRILLAYDSLSGNTKMVADEIEEILQSEGHEVVSFRVSPLAEYP
                     LDEDFDLYVLGAWTVDYGRTPPDMKDFIAELAVKPENVAIFGTGETQWGMEFYCGAVD
                     RMAKYFGTSYPTLKIEQMPHTEQDVADIDNWVKKILALRSGIK"
     gene            4155..4481
                     /locus_tag="U0342_002541"
     CDS             4155..4481
                     /locus_tag="U0342_002541"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465676.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2423871.1"
                     /translation="MTSIEIKSPEEFQAHINGEELVYVDYWKDNCPNCKMLDLSFAEF
                     KNSEIASKVKVLKVKLEEMGENFFFDRDVQQTPTLVLYKGGEEIHRLNGFIPPNKIEE
                     AVSLNA"
     gene            4590..4889
                     /locus_tag="U0342_002542"
     CDS             4590..4889
                     /locus_tag="U0342_002542"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleotide pyrophosphohydrolase"
                     /protein_id="HEM2423872.1"
                     /translation="MKQLQAEITAFLKERDWLDQYNHPKDLAISLSLEAAELLECFQW
                     KTDEIALKENREELLKEVADVLIYALQIAESMGADGEELVRMKLAENRRRTWPKK"
     gene            complement(4932..5108)
                     /locus_tag="U0342_002543"
     CDS             complement(4932..5108)
                     /locus_tag="U0342_002543"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465674.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423873.1"
                     /translation="MKLAGLVLLLIGLIGFGFSFSITGLIGFGVCIISIILVIAGIFA
                     MIRSKKRRKRSYSY"
BASE COUNT         1796 a          853 c         1027 g         1443 t
ORIGIN      
        1 aagtagtagc atttttatac ttgaaatatg ctcgaaaaca cacaagtgcc ggaaaaaatt
       61 tttttatttg ctgaaaacct tgttgtaatc attgtttaga cacttttcgt aataaaacca
      121 gagtactata tcttgcattc acaatgaaaa agttatacta tatatagtat cgaaagcgaa
      181 atattgcttc atcgcctttt aacttttatc aggggaattt gctcctttaa aagttaattt
      241 ttttgctcca tggaacgacc acaatagttc agcggacgaa taaaaagcgc aaagtgaatc
      301 agatattttt acaacgagga aaaaaggatg aaatggggat tgcaaatgac aacttacata
      361 gtaaaagacg ggggaaacag aaagctacct tttgacaaaa gccgattgga tggatattta
      421 gagaaaatcc atgaagaatt tccgaaactt gatttggagg attacaaacg taaggttttt
      481 aattttgtag agaagaagga agattatgcg gctgacgaat tagtcgatta tttaattagg
      541 gaagcagaag ctcgtactga tattcatatt cctgaatggg aacatttcgc agcacgcctt
      601 tatttaaata aattatataa aaaagcaagt aaaaatcgtt tctataatga tgatgataaa
      661 tatggttcgt acgttggact acaagagagt ctaggcgaac gtggtattta ttctggcaat
      721 attctaaaaa attattctaa agaagatttg attgcagcag ggaaattaat tgaccctgaa
      781 aaagataaat tattcactta taatggtttg tatttacttg cgactcgtta cttagcgact
      841 gactctgaac gtaatgtgta tgagttgcca caagaacgtt ggttaactat cgcactttat
      901 ttaatgcaaa atgaaccaaa agaaaaacgg atgaaactag tagaagaagc ttactgggct
      961 ttaagtaatt tatatatgac tgttgcaaca ccgacacttg caaatgctgg aaaagttggc
     1021 ggtcaattgt ctagttgttt cattgatact gtagatgata gcttgcaagg tatttatgac
     1081 agtaatacag acgtcgctag agtttctaag cacggtggtg gtgttggcgc atatcttggg
     1141 tatgttcgtt caacaggagc tgctatccgc ggcgtcaaag gcgcaagtgg tggcgttatt
     1201 ccttggatta aacaattaaa caatactgcg gttagcgtag atcaattagg tcaacgtaaa
     1261 ggcgcgattg cagtttattt agatgttttc cataaagata tcgaatcttt ccttgatttg
     1321 cgattaaaca atggtgacca acgtttacgc gcacatgatg tattcactgc agtttgtatc
     1381 cctgatattt tcatggaagc tgtagaacgt cgtggcgagt ggtatttgtt tgatccacat
     1441 gaagtaaaag cgaaaaaagg ctggtaccta caagatttct acgatgaatc aaaaggtgaa
     1501 ggtactttcc gtgaaaaata tgaagaacta gtagcagatg aaacaattag caaaaaaatt
     1561 gttaaagcta ttgatatcat gaaacgtatt atgatgagtc aattagaaac agggaatcca
     1621 ttcatgtttt accgtgatga agtaaacaga atgaacccta ataaacatga aggcatggtg
     1681 tattctagta acttatgtac agaaatcatg caaaatatga gcccaacaaa aatgattcaa
     1741 gaaattattt ctggagatca aattgttatc acaaaacaag cgggagattt tgttgtatgt
     1801 aacttatctt ctgttaacct aggtcgtgcg gttgttgctg aagaaggtac tttagaacgt
     1861 ttaatcgaag tagaagtacg gatgttagat aacgttatcg acttaaacga actaccagta
     1921 ccacaagcta ctatcacgaa ccaaaagtac cgttctatcg gacttggaac atttggttgg
     1981 caccatctgc ttgctcttaa aaatatcgct tgggactcag aagaagcgga gaaatatgcc
     2041 gatgaattat atgaacaaat taactattta gctattcgcg caagtaacaa actagcgcaa
     2101 gaaaaaggtg cttataaagt ctttaaaggc agtgattgga atactggaga atacttcgcg
     2161 cgtcgtaact ataattcacc tgaatggcaa gaattagcaa aagaagtagc agaaaaaggt
     2221 ttgcgtaatg catatcttgt agctgtagca ccaaatatga gtacagctca aattgctgga
     2281 tccactgctt caatcgaccc aatttacagt gcattctact atgaagagaa aaaagattac
     2341 cgtcgtccag ttattgcacc ggacttaaac ttaagcacat acccatacta cgaaaaaggt
     2401 gcttacaaag ttgaccaatt cgcaagcgtt cgtcaaaacg gtcgtcgtca acgtcacgta
     2461 gaccaatcac taagctttaa cttctatgta ccaagtggta tcaaagcaag taaactactt
     2521 gaactacaca tgacggcttg gaatgaagga cttaaaacaa cttactatgt tcgctctaac
     2581 gatatcgatg ttgaagagtg cgaatggtgc tcaagctgat acatctctaa aatactttac
     2641 acttagtaca aaatgaaagg gagggcttgc ctagatggct aaccaaaaag aacaactgac
     2701 acgtattaaa attttagaac ctttatttcc taatcgttct acttcaatca taaacggaga
     2761 aactagtggg attttaaatt ggaatgacat cccgtatcct tctttctacc gtgcgtataa
     2821 agaactttct actaactact ggattccaga tgaagtagac atgaaaagcg atgcaaaaca
     2881 atatcccgct ctttcagaac aagaaaaata tgcttttgat gcaatcattg gcttgctagc
     2941 aacactggat tctccgcaaa cacgttttat ttataatatt gcggaatata ttaccgatcc
     3001 agctgttcat gcaaacgcag cgattatcgc gcaacaagaa gtcattcata atgagagtta
     3061 ttcctatgta cttgcatcta ttaccaattt acaagaacaa aatcgcgtat ttgaacttgc
     3121 gagaacacat ccgacaatca tcaaacgtaa tgagccaatc atggacgcat atgatgactt
     3181 catgaataac aaaacaggtg aaacacttgt aaaagcatta attcaatctt ctattttaga
     3241 aggaattaat ttctatagtg gttttgctta cttctacaat cttgttcgtc aaaataaaat
     3301 gactggaaca gggaaaataa ttagctttat caatcgtgat gaacttgctc actcgaagtt
     3361 catttcagaa gtaatccggg caatccttgg tgaaaaccca gaattacaaa cagaagagct
     3421 agtagaatac acacatgatg ctttccgcca cgctgttgaa cttgaaacag aatggtctga
     3481 agaagtgtta caaggtattg aaggtattga tgtggaagaa atggttgact acgtgaaata
     3541 tcgggccaac aaaatgctag gaatgcttgg tattccagaa ctttatccag gacatagtga
     3601 taacacaatg acatggatta aagcatacgc agataacttt acagaaacaa aaaccgactt
     3661 tttcgaaatg cgcaattcaa gctataaaaa aacgaatatg gataacggat tcgacgattt
     3721 atgagaattt tgttagccta tgattctcta agtggtaata cgaaaatggt ggctgatgaa
     3781 attgaagaga ttttacaaag cgaaggacat gaggttgtgt cctttcgcgt atctcctcta
     3841 gccgagtatc cgcttgatga ggattttgac ttgtacgtgt tgggggcatg gacagtcgac
     3901 tacggaagaa caccgccgga tatgaaagat tttatcgcgg aactagccgt taagcccgag
     3961 aatgtagcca tttttggtac tggggaaaca caatggggta tggagtttta ttgcggagct
     4021 gttgaccgaa tggcaaaata cttcggcaca agctacccga ctttaaaaat agaacaaatg
     4081 ccacacacag aacaagatgt ggctgatata gacaattggg tcaagaaaat tttagcgtta
     4141 aggagtggaa tcaaatgaca agtattgaaa ttaaatcacc tgaagagttc caagctcata
     4201 taaatggaga agaattagta tatgtagact attggaaaga taattgtcct aattgtaaaa
     4261 tgcttgatct ttcttttgct gaattcaaaa actctgaaat cgcaagcaaa gtgaaagtat
     4321 taaaagtaaa attagaagaa atgggcgaaa atttcttttt tgaccgtgat gtacaacaaa
     4381 cgccaacact tgtactttac aaaggcggcg aagagatcca ccgtttaaat ggatttattc
     4441 caccaaacaa aattgaagaa gcagtttcat taaacgcgta atttaatgag agtagcaggt
     4501 ctccttgtaa ataggtggct tggtgctcat ttttttacaa gtacttgcga tatttttcac
     4561 aaataaattc ttctaaagga gttaaaatag tgaaacaact acaagctgaa attactgctt
     4621 ttctaaaaga gcgtgattgg ctagatcaat acaatcatcc aaaagatttg gcaatttcat
     4681 tgtcacttga agcagcagaa ttacttgaat gctttcagtg gaaaacagat gaaatagcgt
     4741 taaaagaaaa tcgtgaagaa cttttaaaag aagtagctga tgtgcttatc tatgctcttc
     4801 aaattgcaga gagtatgggg gcggacggcg aggaacttgt tcgaatgaaa ttagcagaga
     4861 atcgtaggag aacttggcca aagaaataaa aaaagctgct ttaccaaatg atgataaggc
     4921 agctttttat tttaataaga ataagaacgt ttacggcgtt ttttggaacg aatcattgca
     4981 aaaattcctg ctataactaa gataatagaa atgatacata caccaaaacc gataagtccg
     5041 gtaatgctaa acgaaaagcc aaaaccaatc aaaccaatca gaagtaacac taagccagct
     5101 aatttcattt gaaaactcc
//
LOCUS       DASEAA010000182         4947 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.182, whole genome shotgun sequence.
ACCESSION   DASEAA010000182 DASEAA010000000
VERSION     DASEAA010000182.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4947)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4947)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4947
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.182"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            64..1278
                     /locus_tag="U0342_002544"
     CDS             64..1278
                     /locus_tag="U0342_002544"
                     /EC_number="2.7.2.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aspartate kinase"
                     /protein_id="HEM2423874.1"
                     /translation="MGLVVLKFGGTSVSTVDKIGKTADQAIYEKKQGNKVIVVVSAMG
                     KSTDKLVAMAEEISEAPDKREMDMLLSTGEQITIALLAMTLKEKGHDAISYTGWQAGI
                     ETEAVHSNARIADIDSARIESALDAGQIVVVAGFQGFTTDGEITTLGRGGSDTTAVAI
                     ASALNAVKCAICTDVVGVFTTDPRYVKKAQKLEQITYDEMLELANLGAGVLHPRSVEY
                     AKNFRIPLEVRASHEQVPGTMIEEDLTMENTKVVRGIAFEDQITRVTIHWKQKEAMRV
                     SKVFTKLAENNIDVDIIIQGITGLGHGNLSFTIKTSALLATLAVLEESKELLQIEKLE
                     SEQDLAKVSIVGSGMVSNPGVAAQMFEALTENNIPIKMISTSEIKVSTVVPARKMVEA
                     AQVLHDQFELDK"
     gene            complement(1334..1828)
                     /locus_tag="U0342_002545"
     CDS             complement(1334..1828)
                     /locus_tag="U0342_002545"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464761.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YslB family protein"
                     /protein_id="HEM2423875.1"
                     /translation="MVIMVYESGVSEMTENEQNKNEEKALVPSFGLDLLRDYLIPELL
                     GDEAPHIMYWAGKDLARKFPLASLEEVAEFFEEASWGNFSILKEKKDEMRLLLEGETV
                     AARFRTQEEPTFKLEAGFIAEQLQSQKKLYTESYDEIDKRKKQVTIIVKWDRKETIDN
                     EERY"
     gene            1976..2776
                     /gene="racE"
                     /locus_tag="U0342_002546"
     CDS             1976..2776
                     /gene="racE"
                     /locus_tag="U0342_002546"
                     /EC_number="5.1.1.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glutamate racemase"
                     /protein_id="HEM2423876.1"
                     /translation="MKQAIGFIDSGVGGLTVVREVLKQLPHEQVYYLGDTARCPYGPR
                     DKEEVAKFTWEMTNFLVDRGIKMLVIACNTATAAALYDIREKLDIPVIGVIQPGSRAA
                     LKATRNNKIGVLGTLGTVESMAYPTALKGLNRRVEVDSLACPKFVSVVESGEYKSAIA
                     KKVVAESLLPLKSTKIDTVILGCTHYPLLKPIIENFMGDGVAVINSGEETASEVSALL
                     DYHNLLDATDEEIEHRFFTTGSTQIFKDIAKDWLNMPDMTVEHIKLGK"
     gene            2789..3535
                     /gene="rph"
                     /locus_tag="U0342_002547"
     CDS             2789..3535
                     /gene="rph"
                     /locus_tag="U0342_002547"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease PH"
                     /protein_id="HEM2423877.1"
                     /translation="MRVDGRESNALRNIEVTPDYLMHPEGSVLIASGNTKVICSASVE
                     TKVPPFMRGEGRGWISAEYSMLPRATNTRNIRESSKGKVTGRTMEIQRLIGRALRAVV
                     DLDALGERTIWLDCDVIQADGGTRTASITGAFIAMVMAIAKLDEAVPFAKFPVKDFLA
                     ATSVGVLEEGGTVLDLNYVEDSAAQVDMNIIMTGSGAFVELQGTGEEATFSETELAEL
                     IALGKKGISELIEIQKETLGDKVTARIKGE"
     gene            3539..4150
                     /locus_tag="U0342_002548"
     CDS             3539..4150
                     /locus_tag="U0342_002548"
                     /EC_number="3.6.1.66"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XTP/dITP diphosphatase"
                     /protein_id="HEM2423878.1"
                     /translation="MSKIIIATANKGKAKEFEKIFAKFNIEVATLADFPEIGEIEETG
                     TTFAENAALKAETVASVLNQTVIADDSGLIVDALDGAPGVYSARYAGIAHDDAKNNEK
                     LLKNLEGVEPDKRTARFHCTLAVATPSEKTSFYTGEVEGVIAEQLCGTNGFGYDPLFF
                     LPEFGLTMAEIPAEKKNEISHRANAIKQLEKDLAEVVEKVTKK"
     gene            4187..4711
                     /locus_tag="U0342_002549"
     CDS             4187..4711
                     /locus_tag="U0342_002549"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464765.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metallophosphoesterase"
                     /protein_id="HEM2423879.1"
                     /translation="MKLLVVSDSHSERDCLIHLKEKYENTVDAMIHCGDSELEADDPA
                     IQGFHTVRGNCDFGGGFPNDWVGEVDGYRIFTTHGHLYNIKMTLMNLRYRARELNADF
                     AFFGHSHELGVDMLDDTIILNPGSISLPRGRIRVKTYALIDSTPEGIQVRFMDRDDNE
                     LTDLTQTFPLTKHN"
     gene            4822..4895
                     /locus_tag="U0342_002550"
     tRNA            4822..4895
                     /locus_tag="U0342_002550"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:4856..4858,aa:Arg,seq:tct)
BASE COUNT         1700 a          950 c         1027 g         1270 t
ORIGIN      
        1 acataaatgc gctaaaatat aaacattgat aaaaaagaac taacaaggca ggagggaacg
       61 agattgggac tagtcgtatt aaaatttggc ggaacatcag tgagcacggt ggataaaatc
      121 gggaaaacag cagatcaagc catttatgaa aaaaaacaag gaaataaagt catcgtcgtc
      181 gtttccgcaa tggggaaatc aaccgacaaa ttagtcgcga tggcagaaga aattagcgag
      241 gcaccagata aacgcgaaat ggatatgctt ctttctactg gtgagcaaat cacaattgct
      301 ttacttgcga tgacattaaa agaaaaaggg cacgatgcta tatcctatac aggatggcaa
      361 gcgggaattg aaacagaagc cgtacatagt aatgctagaa ttgccgatat tgatagcgct
      421 cgtattgaat ctgcgcttga tgcgggacaa attgttgttg tagcaggttt tcaaggtttc
      481 acgacagatg gtgaaattac tacattagga cgaggtggat cagacacaac cgccgtcgcc
      541 atcgcttctg ctctaaatgc cgtaaaatgc gcgatttgta cggatgtagt cggtgtattt
      601 acgacagatc cacgctacgt gaaaaaagcc caaaagttag aacaaatcac ctatgatgaa
      661 atgttagaat tagctaatct cggtgccggt gttttacatc cacgctccgt tgaatatgcc
      721 aaaaatttcc gaattccgct tgaagtcaga gcgagccacg aacaagtacc aggaacaatg
      781 attgaggagg atttaacaat ggaaaatacc aaagtagtcc gtggaattgc ttttgaagac
      841 caaatcaccc gtgtaactat ccactggaaa caaaaagaag caatgcgagt ttctaaagtc
      901 tttacaaaat tagcagaaaa taatattgat gtagatatta ttatccaagg aattactgga
      961 ctaggtcacg gtaatctatc cttcactatc aaaacaagcg cactcttagc cacactagca
     1021 gttttagaag aaagcaaaga attacttcaa attgaaaaac tagaatccga acaagattta
     1081 gcgaaggtgt ccattgttgg ctctggaatg gtaagtaatc caggtgtagc tgcacagatg
     1141 tttgaagctt taacagaaaa taatattcca ataaaaatga ttagcacatc agaaatcaaa
     1201 gtttccactg tcgtaccagc gcgcaaaatg gtcgaagcag cccaagtttt acatgaccaa
     1261 tttgaactcg ataaataaaa ataagcttgt agcatcaaag aggatttctc tttgttactg
     1321 caagcttatt gttttaatag cgttcttcgt tatcaatcgt ttctttacga tcccatttaa
     1381 cgataatggt tacttgtttt ttacgtttat caatttcatc gtagctttct gtatacagct
     1441 tcttctgtga ttgcaattgt tctgcaataa agccagcttc tagtttaaat gtaggctctt
     1501 cttgtgtacg gaaacgagca gcaactgttt caccttctaa aagtaaacgc atttcatctt
     1561 tcttttcttt caaaatgcta aaattacccc aagaggcttc ttcaaaaaat tctgctactt
     1621 cttctagaga cgctagtggg aatttacgtg ccaagtcttt ccccgcccag tacataatgt
     1681 gaggtgcttc atctccaagt agttcaggaa ttaaataatc gcgtagtaaa tctaaaccaa
     1741 aacttggaac gagagctttt tcctcgtttt tattctgttc attttctgtc atttcggata
     1801 ccccactttc atacaccatt ataaccaaaa tcaccctaaa atggaaagca caataaataa
     1861 atttccacaa aaaagctttt ttctcaaaaa agacttgcga aaaagctcaa aaaataagaa
     1921 aatggaaggt atagataaaa aaattggaaa ttaataaaga aattgaggcg agactgtgaa
     1981 acaagctatt ggctttattg attcgggagt aggcggtttg acagtagtgc gagaagtgct
     2041 aaaacagcta ccccatgaac aagtatatta tttaggtgat accgcacgtt gcccttatgg
     2101 accacgcgat aaagaagaag tagctaagtt tacttgggaa atgaccaatt ttctagtaga
     2161 ccgtggcatc aaaatgctcg ttattgcatg taataccgca acagcagcag cattatatga
     2221 tattcgtgaa aaattggata ttcctgtgat tggtgtaatc caaccaggtt caagagcagc
     2281 tctcaaagca acaagaaaca acaaaattgg cgtattagga acacttggta cagtcgaaag
     2341 catggcttac ccaacagcgc tcaaaggact aaaccgccga gtagaagtag attcactggc
     2401 atgtccgaaa tttgtatccg ttgtagaatc tggcgagtat aaaagcgcca ttgcaaaaaa
     2461 agtagtagcc gaatcactct taccactgaa gagtaccaag attgatacgg tgattttggg
     2521 ttgtacgcat tacccacttt taaaaccaat tattgagaat tttatgggag acggcgttgc
     2581 tgttattaac tccggagaag aaactgctag tgaagttagc gcgttactgg attaccataa
     2641 tttattagat gctacagacg aagaaattga gcaccgtttt ttcactacgg gctcgacaca
     2701 aattttcaaa gatattgcaa aagactggtt aaatatgcca gatatgactg tagaacatat
     2761 taaattagga aaataagagg tgccaataat gagagttgat ggaagagaaa gtaatgcatt
     2821 acgaaatatt gaagtaacac cagattattt aatgcatcca gaaggttctg tgctaattgc
     2881 atcaggaaat acaaaagtta tctgttctgc aagtgtagaa acaaaagtgc caccatttat
     2941 gcgaggagaa ggccgcggct ggatttctgc agaatactcg atgttaccac gagcaacaaa
     3001 cacccgaaat atccgtgaat cttcaaaagg taaagttact ggcagaacaa tggaaattca
     3061 gcgtttaatc ggacgtgcgc tccgtgctgt tgttgattta gatgcccttg gtgaaagaac
     3121 aatttggctc gattgcgacg ttatccaagc agatggaggt actcgtacgg cttctatcac
     3181 cggcgcattt atcgcgatgg tcatggcaat cgccaaacta gacgaagctg taccatttgc
     3241 taaatttcct gtcaaagatt tcctagcagc aactagcgta ggtgttttag aagagggtgg
     3301 aacagtactt gaccttaact acgtagaaga cagcgcagcg caagtagata tgaatattat
     3361 catgacaggt agcggcgcct ttgtagaact ccaaggaact ggcgaagaag ctacattctc
     3421 ggaaacagaa ctggctgaac taattgcctt aggtaaaaaa ggaattagcg aattaatcga
     3481 aatccaaaaa gaaacactcg gagacaaagt cacagcgcgg attaaaggag aataaaaaat
     3541 gagtaaaatt attatcgcta ccgcaaacaa aggaaaagca aaagaattcg aaaaaatctt
     3601 tgcgaaattt aatatcgaag tagcaaccct tgctgatttt ccagaaattg gtgaaataga
     3661 agaaactgga acaacctttg ccgaaaatgc cgctcttaaa gcagaaacgg tcgctagcgt
     3721 gttaaatcaa accgtcattg ctgatgattc tggtttaatc gtagacgcgc ttgacggagc
     3781 tcctggcgtc tattccgcac gttatgcagg tatcgctcac gatgatgcca aaaataacga
     3841 aaaactactt aaaaacttag aaggtgttga accggacaaa agaacggctc gtttccactg
     3901 tacacttgct gtagccacac cttctgagaa aacatctttt tataccggtg aagtagaggg
     3961 cgttatcgca gaacaactat gcggcacaaa tggctttggc tatgatccac tatttttctt
     4021 accagaattc ggtctaacaa tggcagaaat tccagcggag aaaaagaatg aaatcagcca
     4081 ccgtgctaat gccattaaac aactagaaaa agatttagca gaagtagtag aaaaagtaac
     4141 caaaaagtga gaaaataagt aacagtatca cgggggagga aacaaaatga aattattagt
     4201 agttagcgac agccactcag aacgtgactg cttaatccat cttaaagaaa aatacgaaaa
     4261 tacagtcgat gcgatgatcc attgtgggga ttctgaatta gaagctgacg atcctgcgat
     4321 tcagggattt catactgttc gaggcaactg tgactttggc ggcggttttc caaatgattg
     4381 ggtgggagaa gtagacggct accgcatttt caccacacac ggacatctct ataacatcaa
     4441 aatgacactc atgaatttac gatatcgcgc acgtgaatta aacgcagatt ttgccttttt
     4501 tggtcactcg catgaactag gagtagacat gctagacgac accatcattt taaacccagg
     4561 aagcatttcc ttaccaagag gacgcatccg tgtcaaaaca tacgctctta tcgattcaac
     4621 accagaaggc attcaagttc gattcatgga ccgggacgac aacgaactaa cggacctaac
     4681 ccaaaccttc ccattaacga agcataacta ggtcaaaaga cacccgaaaa agaaaaaatg
     4741 caataactta aagaaaacca ttgacaaaca agcgatttaa acataaaatg gtatttggct
     4801 gttgaaaaaa cagtgccatt tgtcctgata gctcagctgg atagagcaac ggccttctaa
     4861 gccgtcggtc gggggttcga atccctctca ggacgtaaat agctatatta aagaaatctc
     4921 taaaacgttg aaaaaccttg atattaa
//
LOCUS       DASEAA010000183         4929 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.183, whole genome shotgun sequence.
ACCESSION   DASEAA010000183 DASEAA010000000
VERSION     DASEAA010000183.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4929)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4929)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4929
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.183"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..596)
                     /locus_tag="U0342_002551"
     CDS             complement(<1..596)
                     /locus_tag="U0342_002551"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465010.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class I SAM-dependent methyltransferase"
                     /protein_id="HEM2423880.1"
                     /translation="MSYEYFPGFYDRLMDSELYDEWLEFTAHFIGDTPKKILDLACGT
                     AEFALRLSFSGHQVTGVDLSKEMVAVAKEKVAAAEINLPIIEQDMSKLALKQTFDVVT
                     CFCDSLNYLETEQALEATIQAVSVHLEPNGLFLFDVHSVFKVDQGFKDYSYGDSDEEI
                     STIWNSFPGEHPHSVEHELTFYILDEDDTYNRVDELHK"
     gene            complement(652..1008)
                     /gene="rsfS"
                     /locus_tag="U0342_002552"
     CDS             complement(652..1008)
                     /gene="rsfS"
                     /locus_tag="U0342_002552"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465011.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome silencing factor"
                     /protein_id="HEM2423881.1"
                     /translation="MNSYDTLMLTAKAADDKRAEDILALDMKGLSSFADYFVICHGNS
                     DKQVQAIAREIKEKALENQVDVKRLEGFDAAKWILIDLGDVIIHVFHKEERSYYNLEK
                     LWGDAPLVDVSAAFIS"
     gene            complement(1013..1588)
                     /gene="yqeK"
                     /locus_tag="U0342_002553"
     CDS             complement(1013..1588)
                     /gene="yqeK"
                     /locus_tag="U0342_002553"
                     /EC_number="3.6.1.41"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465012.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bis(5'-nucleosyl)-tetraphosphatase (symmetrical)
                     YqeK"
                     /protein_id="HEM2423882.1"
                     /translation="MERNEMLKKVEAAMPNARFKHTLGVEKAAVELAEHYHMDVEKAR
                     ITALLHDYAKYYDDDKARKIIEDEGYDPRLLSFHRSLWHAPVGAYLAEKEFGITDTEI
                     LEAIRLHTTGSATMSDFDKLIYLADYTEQGRTFPGVYKARRLALKSLNEAMLFALSNT
                     ITHLVKKQQLVFPDTLDAYNYFVNLNLEGDY"
     gene            complement(1575..2141)
                     /locus_tag="U0342_002554"
     CDS             complement(1575..2141)
                     /locus_tag="U0342_002554"
                     /EC_number="2.7.7.18"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465013.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nicotinate-nucleotide adenylyltransferase"
                     /protein_id="HEM2423883.1"
                     /translation="MKHKVGILGGTFDPPHLAHLRMAEEAKKQLGLEKILFLPNKIPP
                     HKHISGMASNDERVEMLQLMIEGIDSFEIDTRELMRAGKSYTYDTMRDMISEQPDTDF
                     YFIIGGDMVEYLPKWYHIDDLVKMVTFVGVNRPSYQTEVPYDIVKINMPETTISSTEI
                     RNNIENASTFLPEKVWSYIKEHQLYGKK"
     gene            complement(2159..2449)
                     /gene="yhbY"
                     /locus_tag="U0342_002555"
     CDS             complement(2159..2449)
                     /gene="yhbY"
                     /locus_tag="U0342_002555"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465014.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome assembly RNA-binding protein YhbY"
                     /protein_id="HEM2423884.1"
                     /translation="MLTATQKRFLRKEAHNIQPIFQVGKGSVSPNLIIHVKEALEARE
                     LIKISILQNCEEDKQTVAEKISARSGAEIVQVIGRTIILYKTSVNKQQIKLP"
     gene            complement(2449..3270)
                     /gene="aroE"
                     /locus_tag="U0342_002556"
     CDS             complement(2449..3270)
                     /gene="aroE"
                     /locus_tag="U0342_002556"
                     /EC_number="1.1.1.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465015.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate dehydrogenase"
                     /protein_id="HEM2423885.1"
                     /translation="MEKYVVIGNPIRHSLSPAMQNRIFQELGMNAEYNSVLIEEDAFE
                     TEIKKLMDSGVRGFNITTPFKERILPFLDELEDLAAASGAVNTVLKKEDKWYGFNTDG
                     KGYLEGLEEIRSITEDDSILITGAGGASKAIYLALSTHTDAKITVTNRTTEKAIEMTK
                     DNENHHAVTLEEAEKQLADFTVIIQTTSIGLEASKNKSPISLANVKKGTICSDIIYNP
                     AETAFLKEAKKNGAITQNGLPMFVNQGALAFEIWTGIKPERSLMKEAVLEQLGGN"
     gene            complement(3290..4390)
                     /gene="yqeH"
                     /locus_tag="U0342_002557"
     CDS             complement(3290..4390)
                     /gene="yqeH"
                     /locus_tag="U0342_002557"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465016.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribosome biogenesis GTPase YqeH"
                     /protein_id="HEM2423886.1"
                     /translation="MTEEIRCIGCGAVIQTEDPDKIGYAPKSSLNNEQVICKRCFRLK
                     HYNEIQDVALTDDDFLRILNQISSKQALIVYVVDIFDFDGSWLPGLPRFAGSNPVLLV
                     GNKEDVLPKSLKRDKLTRWMRTRAKEQGLAATDVVLVSAEKGHGFDTLLEKIEELRNG
                     QDVYVVGCTNVGKSTLINRIIKQASGENNVITTSQFPGTTLDKIEIPLADGNVLVDTP
                     GIINHHQMAHFIDTTTLKAITPKKEVKPAVFQLNEEQTLFLGALARLDYVSGGRKSLV
                     VYVSNNLPIHRTKLEKADALYEKQAGIVLQPPTEEGMETLPKLVPYSFTIKEKADIVF
                     SGLGWVTIPEGGAKVTAWVPEGVSATIRTSLV"
     gene            complement(4387..4908)
                     /locus_tag="U0342_002558"
     CDS             complement(4387..4908)
                     /locus_tag="U0342_002558"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465017.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqeG family HAD IIIA-type phosphatase"
                     /protein_id="HEM2423887.1"
                     /translation="MLKQFSPDKMLNTPFGITAAQLRKMGKTTILTDLDNTLLAWDQL
                     DATDEVINWFTILKEEGIKVMIFSNNNEERVARVAKAIDVPYLARAKKPLGANFRWAL
                     KEMDATPEETVMIGDQIMTDIFGGNRQKLTTIFVRPVKQTDGMATKLNRMMESVILKR
                     LAKKNQIKWEESL"
BASE COUNT         1356 a         1023 c          844 g         1706 t
ORIGIN      
        1 tctttatgca gttcgtccac gcgattatac gtgtcatctt catctaaaat atagaaggta
       61 agttcatgtt cgacagaatg cggatgttcg ccaggaaatg aattccaaat cgtcgaaatc
      121 tcttcatcgc tatctccgta tgaataatct ttaaaccctt gatctacttt aaagacggaa
      181 tgtacgtcaa ataaaaataa gccatttggt tctaaatgca ctgatacagc ttgaatagta
      241 gcctcaagag cttgttctgt ttccaaataa ttaagtgaat cacagaagca tgtaactaca
      301 tcaaacgttt gctttaatgc taacttggac atatcttgtt ctataatcgg caaattgatt
      361 tcagccgctg ccactttttc tttagcaact gccaccattt cttttgataa atccacacca
      421 gtaacttgat gaccagaaaa acttaaacgt agcgcaaatt cagctgttcc acaagccaaa
      481 tcaagtattt ttttaggagt atctccaatg aaatgagccg tgaattctag ccattcatca
      541 taaagttcgg aatccattaa tctatcatag aaacccggaa aatattcgta actcatagta
      601 atttctcctt aaaaaaacag acgagaattc cctcgcctgt tctgtttttt attaagaaat
      661 aaacgcagca gaaacgtcca cgagtggcgc atctccccaa agtttttcta agttatagta
      721 agaacgttct tctttatgga acacatggat aataacatca cctaagtcga ttaaaatcca
      781 ctttgccgca tcaaaacctt ctaaacgctt cacatctact tggttttcta acgctttttc
      841 tttaatttca cgagcgattg cttgcacttg tttgtctgaa ttaccgtgac agataacaaa
      901 gtaatccgca aagcttgata accccttcat gtctagtgct aaaatatcct ctgctctttt
      961 atcgtctgct gccttagcag tcagcattaa tgtatcataa ctgttcaaat tattaatagt
     1021 ctccttccaa atttaaatta acgaaataat tgtaggcatc cagtgtatct ggaaaaacca
     1081 attgttgctt tttgactaag tgcgtaatcg tattcgataa agcgaataac attgcttcgt
     1141 taagcgattt aagtgctaat ctgcgtgctt tatatacgcc gggaaatgtt cttccttgtt
     1201 ctgtatagtc agctaagtag ataagtttat cgaaatcaga catcgtcgcg cttcctgtcg
     1261 tatgcagacg aatcgcttct agtatttctg tatcagtaat accaaattct ttttctgcca
     1321 gataggcgcc aacaggagcg tgccacagcg aacgatgaaa agaaagtaaa cgcggatcat
     1381 aaccctcgtc ctcgataatt tttctcgctt tatcatcgtc atagtactta gcataatcat
     1441 gtagcaaagc ggttattcgt gctttttcta catccatatg ataatgttct gcaagttcta
     1501 cagctgcttt ttctacgcct aaagtgtgtt taaatcgagc attaggcata gctgcttcta
     1561 ctttttttag catttcattt ctttccataa agttgatgct cctttatata tgaccatact
     1621 ttttctggta aaaaggtgct cgcgttctca atattatttc taatttccgt agaagaaatc
     1681 gtcgtttctg gcatattgat tttaacgata tcatacggaa cctccgtctg ataactgggg
     1741 cgattaaccc caacgaatgt caccattttt actaagtcat ctatatgata ccactttggc
     1801 aaatattcta ccatgtcccc gccgataatg aaataaaaat ctgtatccgg ctgttcgctt
     1861 atcatatcac gcattgtgtc atacgtatag gactttcccg cgcgcatgag ttcacgtgta
     1921 tcaatttcaa aggaatctat accttctatc attaattgaa gcatttctac acgctcatca
     1981 tttgaagcca taccactgat atgtttatga ggcggaattt tattaggtaa aaaaagaatt
     2041 ttctcaagtc ctagttgctt cttagcctct tctgccatgc ggaggtgcgc taaatgcggc
     2101 ggatcaaaag tcccacctaa gatgccgact ttatgtttca tcgtaggttc ctcccgattt
     2161 atggcaactt aatttgttgc ttgtttacag aagttttgta cagaataatc gttctgccaa
     2221 tgacttgaac gatttccgcg cctgaacgag cactaatttt ttctgcaacg gtttgtttat
     2281 cttcttcgca attttgtaga atcgagattt taattaattc tctcgcttct agtgcttctt
     2341 ttacgtggat aattaagttt ggtgatacgc ttccttttcc tacttggaaa atgggttgga
     2401 tattatgcgc ttcttttctt aaaaaacgtt tttgtgtagc tgttaacatt agtttcctcc
     2461 taattgttcg agtactgctt ctttcatcag tgatcgctct ggttttatcc cagtccatat
     2521 ttcaaaggca agtgcccctt gattaacaaa catcggtaag ccattttggg taatagctcc
     2581 atttttcttt gcttctttca aaaaggctgt ttcggctgga ttataaataa tatcagaaca
     2641 aatcgttcct ttttttacat tagccagcga aattgggctt ttgtttttgg aagcttctaa
     2701 accgatagat gttgtttgaa tgataaccgt aaaatcagcc agttgttttt ctgcttcttc
     2761 tagtgtgacg gcgtgatgat tttcattatc tttcgtcatt tctatcgctt tttccgttgt
     2821 acgattagta acggttattt tagcatccgt gtgagtggaa agcgctaggt aaattgcctt
     2881 gcttgcgcca cccgcaccgg taattaaaat agaatcatct tctgtaattg agcggatttc
     2941 ttctaatcct tctaagtagc ctttgccatc tgtattaaat ccgtaccatt tgtcctcttt
     3001 ttttagcaca gtattcactg cgccagaagc tgctgcaaga tcctctaatt catctaaaaa
     3061 tggtaaaata cgctctttaa atggtgttgt aatattaaat ccacgcactc cagaatccat
     3121 taattttttg atttctgttt caaaagcgtc ttcttctatt aaaacagagt tatactccgc
     3181 attcattcca agttcttgga aaatccgatt ttgcatagct ggtgataacg agtgacgaat
     3241 aggatttccg ataacaacat atttttccaa atgataggcc tccttcgttt taaacgagtg
     3301 atgtccggat agttgcgctc acgccttcag gaacccacgc agtaactttc gcgccgcctt
     3361 ctggaattgt cacccagccg agtccggaaa agacaatatc cgctttttct tttattgtaa
     3421 aagaatacgg aactagctta ggaagtgtct ccatcccttc ttctgtaggc ggttgaagca
     3481 ctattcctgc ttgtttttcg tataacgcat ccgctttttc taattttgtc cggtgaattg
     3541 gtaaattatt agatacatag actactaatg atttgcgacc acctgaaaca taatctaagc
     3601 gagcaagcgc ccctaaaaat agggtttgtt cttcgtttaa ttggaagaca gctggtttta
     3661 cttctttttt aggtgtaata gcttttaacg ttgttgtatc aatgaaatgt gccatttggt
     3721 gatggttaat aattcctggt gtgtcaacaa gtacattgcc atctgctaat gggatttcga
     3781 ttttatcaag cgttgttcct gggaattgag aggttgtaat gacattgttt tccccggatg
     3841 cttgtttaat aatacgattg attagcgttg atttaccaac gtttgtacaa ccgacaacat
     3901 agacatcttg tccatttcgc aattcttcaa ttttctctaa aagagtatca aaaccgtggc
     3961 ctttctcagc gctaactaat acgacatctg tcgccgccaa gccttgctct ttggcacgag
     4021 ttctcatcca acgtgtcaac ttatcacgtt ttaatgattt tggtaataca tcttctttgt
     4081 tcccgacaag taataccgga ttacttcctg caaaacgagg aagtccaggt aaccaactac
     4141 catcgaaatc aaaaatatct actacataaa caattaaagc ttgtttcgaa ctaatttgat
     4201 ttaaaatacg taaaaaatca tcgtctgtta gggcaacatc ttgaatttca ttgtaatgtt
     4261 ttagacgaaa acatctttta caaataactt gctcattgtt cagggatgat tttggagcat
     4321 agccgatttt atcagggtct tctgtttgaa taaccgcgcc acaaccaata catctaattt
     4381 cttctgtcaa agtgattcct cccacttaat ttggtttttc tttgctaatc gttttaaaat
     4441 aacgctttcc atcattcgat ttaattttgt cgccatacca tctgtttgtt ttacagggcg
     4501 aacaaaaata gttgttaatt tttgacggtt tccaccgaat atatctgtca taatttgatc
     4561 gccaatcatc acagtttctt ctggtgttgc atccatttct tttaatgccc agcggaaatt
     4621 agcgcctaag ggtttttttg cccgggctaa ataaggaaca tcgattgctt ttgccacacg
     4681 agcaactcgt tcttcgttat tgttagaaaa aatcattact ttgattcctt cttctttcaa
     4741 tatagtaaac cagttgataa cttcatccgt tgcgtctagt tgatcccatg caagcagcgt
     4801 attatcaaga tcagtcaaaa tagtagtctt tcccattttg cgaagttgtg ctgctgtaat
     4861 tccaaatgga gtattcaaca ttttatctgg tgagaattgc tttaacacgt attggcacct
     4921 cattctttt
//
LOCUS       DASEAA010000184         4820 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.184, whole genome shotgun sequence.
ACCESSION   DASEAA010000184 DASEAA010000000
VERSION     DASEAA010000184.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4820)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4820)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4820
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.184"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..568)
                     /locus_tag="U0342_002559"
     CDS             complement(<1..568)
                     /locus_tag="U0342_002559"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423888.1"
                     /translation="MKKFLLDKIGARGLIQMLQAFIYASICVVVHTVIFPDLAGVLPI
                     VVLIGIISMQPTYGITRKVIPQIALAFTLACIFVIISTYFFPINVYIYYVVMIVVILA
                     VNFLMPQKYMVMTLAIGTALYFLGTDDLPMPLYTMIIVALMDVFVFFLLVQLVVKYVH
                     LPLEKTVQTIMKQLVGLFDKEIESVFKNN"
     gene            complement(723..1382)
                     /locus_tag="U0342_002560"
     CDS             complement(723..1382)
                     /locus_tag="U0342_002560"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464548.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TrkA family potassium uptake protein"
                     /protein_id="HEM2423889.1"
                     /translation="MKEGFAVIGLGRFGGSICRSLVEQGMEVLAIDSDEERVNEYMSI
                     ATHAVIANSTDENALRQLGIRNFEHVIVAIGEDIQSSILTTLILKEMGVKYVTAKATN
                     DKHAKLLDKIGADRVVHPERDMGRRIAHYIVSKNMLDYLELSDEYSLVEISVSDPRFL
                     GKSLVDLDFRNSFGVNIVGIKKDKQMIITPEANDVLHEGDILIVIGSDDDIERLQEKI
                     Q"
     gene            complement(1401..2039)
                     /locus_tag="U0342_002561"
     CDS             complement(1401..2039)
                     /locus_tag="U0342_002561"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464547.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2423890.1"
                     /translation="MIKVLLVDDHEMVRIGVSAYLSVQDDMEVVGEAENGREGADMAL
                     ELRPDIILMDLVMDEMDGIEATKEIMQNWKEAKIIIVTSFIDDEKVYPALEAGASSYM
                     LKTSTASEIADAIRATYGGDSVLEPEVTGKMMQRLTAKPEKNLHDDLTNRENEILLLI
                     AEGKSNQEIADELFITLKTVKTHVSNILSKLDVQDRTQAAIYAFKHDLVEKK"
     gene            complement(2036..3094)
                     /locus_tag="U0342_002562"
     CDS             complement(2036..3094)
                     /locus_tag="U0342_002562"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sensor histidine kinase"
                     /protein_id="HEM2423891.1"
                     /translation="MSFSKLMMAVCSGLLLVATAIGTVGYYFFSEGSWYKILIEQKIF
                     YIPFVVFVPLTAISIGLIIGGLLGYFVKQKFESIDFSIRLLGQGDLEKKITSEEDENF
                     LEVQQVYKQIDRLRDKMKAQTILTQKLASDRAESTGQTKEAILSEERHRIARELHDSV
                     SQQLFAAMMLLSALNEQSEKSATPAMQKQLKMVESIVNESQSEMRALLLHLRPTQLEG
                     KSLKTGIEQLLKELTTKLPIEVEWQIEDISLQKGIEDHLFRIVQELLSNTLRHSKAKL
                     LEVRLVTMDNLAVMKVVDDGVGFDMDNVRQGSYGLQNMRERVAEFGGTIKIISFPGRG
                     TSVEIKIPLVAKKDVESE"
     gene            complement(3091..3804)
                     /locus_tag="U0342_002563"
     CDS             complement(3091..3804)
                     /locus_tag="U0342_002563"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell wall-active antibiotics response protein"
                     /protein_id="HEM2423892.1"
                     /translation="MKKMESSVVFVFLIAIIVGVGLEMLFQWELLILFALGIFFIFTS
                     RKASATKKSARNSLFIGIVFIIIAVLLTTTFKVGLVVAGIYAIIHYISRKRAPQLLML
                     KTREPDSKIDRTDKFIRNQWFGNQRILDVVYEWDDINIQTGIGDTILDLGNTVLPTGE
                     SVIMIRSVSGKIRVLVPFDIGICIEHSAIFGNIQYDKESTSIQNNSIKVYSDNYESSA
                     RKVKIMTSVIFGDLEVIRL"
     gene            complement(3939..4811)
                     /locus_tag="U0342_002564"
     CDS             complement(3939..4811)
                     /locus_tag="U0342_002564"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="S1 RNA-binding domain-containing protein"
                     /protein_id="HEM2423893.1"
                     /translation="MNNYIGKSQIMTVKEIKDTGWLLEKDGVTVFLSKSNTHETELAV
                     GAEVTVFIFVDYDREIAATTIIPKIQVGHYGWGTVTEVRKHLGVFVDIGIEKDVVVSL
                     DDLPALPHLWPKKEDRVMIALRVDEENRVWGVLAEEEQFRAIAVRAEQDLFNHNVEGT
                     IYRLLKVGSFVFTDDFHIGFIHESERTSEPRMGERVKARVIAVKPDGSLNLSLRGRAH
                     EVLNDDAEMILTYLRSVGGEMPFGDKSDPDAIRAKFGISKAQFKRAIGTLLKARRITQ
                     ENGVVTKITEETSD"
BASE COUNT         1405 a         1063 c          786 g         1566 t
ORIGIN      
        1 cattattttt aaatacactt tcaatttcct tgtcaaatag tcctaccaat tgtttcataa
       61 tagtttgaac ggttttttcg agtggtaaat gtacatattt tacgactaac tgcaccagta
      121 aaaagaacac aaacacatcc attaacgcga caattatcat ggtatagaga ggcattggca
      181 aatcatctgt tccaagaaag taaagtgctg tcccaatcgc gagtgtcatt accatatatt
      241 tctgcggcat caagaaattc accgccaaaa taacaactat catgacaaca tagtaaatat
      301 acacattgat tgggaaaaaa taggtgctta taatgacaaa aatacacgct agagtgaatg
      361 ctagcgctat ttggggaatg acttttctgg taattccata tgtaggttgc attgaaataa
      421 tccctattag taccactata ggtaaaaccc cggccaaatc aggaaaaata actgtatgga
      481 ccactacaca aatgctcgca taaataaatg cttgcaacat ctgaataagt cctcgagcgc
      541 cgattttatc aagcaaaaat ttcttcatct gttccccctc cttctgtccc tttatgtgaa
      601 gctctgtaac tataatagaa aataactggc tagatagcaa gcggtaattc gcaaacaata
      661 aaaaaaccta agaatatact agacatgttg acatatctct ttatattaca taggttttct
      721 ttttattgaa ttttttcttg tagtcgttca atgtcatcat ccgaaccgat aacgattaga
      781 atatctcctt catgtagaac atcattggct tcaggagtaa taatcatttg tttatctttt
      841 ttaataccga caatattgac accaaaagag ttacggaaat ctaaatcaac taggctcttt
      901 ccaaggaaac gtggatcaga tacagagatt tcgactagac tatattcatc cgataattca
      961 agataatcta gcatgttttt cgatacgatg taatgcgcaa tacgtcgtcc catgtctcgc
     1021 tcaggatgga caacccggtc tgctccgatt ttatcaagca atttggcatg tttatcattc
     1081 gtcgcttttg cggtaacgta ttttacgccc atttctttta aaataagtgt agttaagata
     1141 ctcgactgaa tatcctcacc aatcgcaacg ataacatgct caaaattacg aataccaagc
     1201 tggcgtagcg cgttttcatc tgttgaatta gcgataactg catgggtcgc aatggacata
     1261 tattcgttga cacgttcttc atccgaatca atcgcaagta cttccattcc ttgctcgaca
     1321 agtgaacgac aaatacttcc gccgaatcgc ccaagaccga tgactgcaaa tccttctttc
     1381 atttgtacgt tacctccttg ctactttttt tctactaagt catgtttaaa tgcatagatt
     1441 gctgcttgcg tacgatcttg cacatctaat ttcgataaaa tattacttac atgcgtcttc
     1501 accgttttta aagtgatgaa aagttcgtct gcgatttctt ggttggattt accttccgcg
     1561 attaaaagta agatttcatt ttcacgattc gttaaatcat catgtaagtt tttctctggt
     1621 ttagcggtta gccgttgcat cattttgcca gttacttctg gttcaagaac agagtctccg
     1681 ccgtatgtag ctcgaatcgc atctgcaatt tcgctcgctg ttgaagtttt aagcatataa
     1741 ctgctcgctc cagcttcaag tgccgggtat actttttcat catcaataaa acttgtaacg
     1801 ataattattt ttgcttcttt ccagttttgc ataatttctt ttgtggcttc gatgccgtcc
     1861 atttcatcca taactaaatc cattaaaata atatctgggc gtagttctag agccatatca
     1921 gccccttcac gaccgttctc tgcctcgcca accacttcca tgtcatcttg cacagaaaga
     1981 taagctgaga cacctatacg taccatttca tgatcatcta caagtaatac ttttatcatt
     2041 cgctttccac gtcctttttc gcaacaagtg ggatttttat ttctacacta gttcctcttc
     2101 ctgggaaact aattattttg atggtgccgc cgaattcagc aactcgttct cgcatatttt
     2161 gtaatccata agagccttgt cgaacattat ccatatcaaa cccaacgccg tcatcaacta
     2221 ctttcatcac cgctaaatta tccatcgtta cgaggcgtac ttctaataat ttagctttag
     2281 aatgtcgtaa tgtattggaa agtaattctt gaacaatacg gaacaaatga tcctcaatgc
     2341 ctttttgcaa actaatatcc tcgatttgcc attctacttc gattggcaat ttggttgtta
     2401 attcttttaa taattgctca ataccagttt ttaatgattt accctcgagt tgcgttggac
     2461 gcagatgaag taaaagcgcc cgcatctctg attgggattc atttacgata gattcaacca
     2521 tttttagttg tttttgcatc gccggtgttg cgcttttttc actctgttca ttcaaagctg
     2581 ataaaagcat cattgctgca aaaagctgtt ggctcactga atcgtgtaat tctctagcaa
     2641 tccggtgtct ctcttctgac aaaatagctt ctttcgtttg gccagttgat tcagcacggt
     2701 cgcttgcaag tttttgtgtc aaaatcgttt gtgctttcat tttatcacgt aagcggtcga
     2761 tttgcttgta tacttgctgc acttctaaaa agttctcgtc ttcttcactc gtaatctttt
     2821 tctccaaatc gccttgtccg agcagccgaa tcgagaagtc aattgattca aatttttgtt
     2881 taacaaaata cccgagcaaa ccgcctataa ttaaaccaat cgaaatggct gtaagcggaa
     2941 cgaaaaccac aaagggaatg taaaagattt tttgttcgat gagaatttta taccaagaac
     3001 cttcactaaa aaaatagtaa ccgaccgtac cgatggctgt agcaacaagt agtaaccctg
     3061 agcaaacagc catcatcagt ttcgaaaaac tcatagtcta atcacctcta aatctccgaa
     3121 gattacagaa gtcatgattt tcacttttcg tgcggaactt tcgtaattat ctgagtagac
     3181 cttgatgcta ttattttgaa tagaggtgct ttctttatca tattggatgt ttccgaaaat
     3241 tgcggaatgt tcaatgcaaa taccgatatc aaatggaaca agtacccgaa tttttcctga
     3301 gacactacga atcataatga cactttcgcc agttggtaaa accgtgttcc ctaaatcaag
     3361 aatcgtatca ccaatccctg tttgaatatt gatgtcatcc cattcataca ctacatcaag
     3421 tatacgctgg ttaccgaacc actgattacg aataaactta tccgtacggt caatcttgct
     3481 gtcaggttct ctcgttttga gcatcaataa ttggggtgcc cgcttcctac taatgtagtg
     3541 aatgatcgca taaatacctg caacaacaag cccaacttta aacgtggttg taagtaacac
     3601 ggcgataatg ataaatacga taccaataaa taatgagttt cttgcacttt tctttgttgc
     3661 gcttgccttc cttgatgtaa agataaaaaa tatcccgagt gcaaataaaa taagcaactc
     3721 ccactggaac agcatctcca aaccaacgcc aacaataatc gcaattaaaa atacaaaaac
     3781 aaccgagctt tccatttttt tcaagctgac acacctcctt acgttcctct tttgacaaag
     3841 ttatttctcg atttttgcta ctttgtacat gctgtgttaa ttatagcgag gatttactga
     3901 ttgaaacaac cgcgctagtt ggaacatccc ctactacttt agtccgatgt ttcttccgtt
     3961 atttttgtaa cgacaccatt ctcttgagtg attcgtcttg cttttaaaag cgtaccaatt
     4021 gcacgcttga attgggcttt actaatacca aatttggcac gaatggcatc tggatctgat
     4081 ttatctccga atggcatttc tccgccaaca cttcgcaaat aagttaaaat catttccgcg
     4141 tcatcattta atacttcatg tgctctacca cgaagcgata aattaagaga cccgtccggt
     4201 tttacagcga taacacgagc cttcacacgt tcgcccattc ttggttccga agttcgttca
     4261 ctttcatgta taaatccaat atgaaaatca tccgtaaaaa caaatgaacc gacttttaat
     4321 aaacgataaa tagttccttc gacattatgg ttaaatagat cttgttctgc acgaacggca
     4381 attgcgcgga attgttcttc ttctgcaagg acgccccaaa cacgattttc ttcatccaca
     4441 cgtagcgcaa tcatcacgcg atcttctttt ttcggccaca agtgtggtaa tgcaggtaag
     4501 tcatccaatg ataccaccac gtctttttca atgccgatat cgacaaaaac acctaaatgt
     4561 ttacgtactt ctgtcaccgt tccccagccg taatgcccta cttgaatttt tggaataatc
     4621 gttgttgctg caatttcgcg gtcatagtcc acaaaaataa atacggttac ttctgctcca
     4681 acagcaagtt ccgtttcatg tgtatttgat ttagataaaa aaacagttac tccgtctttt
     4741 tcaaggagcc atcctgtatc tttgatttct ttcactgtca ttatttggct tttgccaata
     4801 tagttattca ctttttttcc
//
LOCUS       DASEAA010000185         4814 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.185, whole genome shotgun sequence.
ACCESSION   DASEAA010000185 DASEAA010000000
VERSION     DASEAA010000185.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4814
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.185"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..641
                     /locus_tag="U0342_002565"
     CDS             <1..641
                     /locus_tag="U0342_002565"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2423894.1"
                     /translation="VPLGLAASLGAAILINMNKKGAGLFRTFFYVPVLCSTVATATIW
                     YWLLNPQYGLINRVLGWFGINGPAWLYDSNWAMFAIVMMSVWMTFGTNMMIFLAGLQG
                     IPANLYEASKIEGASRWKTFRYVTWPSLSRTTFLVTTMLIINAFQVFDQAYVLTKGGP
                     GNSTITLVYYIYNEGFGGLKMGYASAISFVLFLIILVFSIINMRVNKEDRTA"
     gene            653..1528
                     /locus_tag="U0342_002566"
     CDS             653..1528
                     /locus_tag="U0342_002566"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbohydrate ABC transporter permease"
                     /protein_id="HEM2423895.1"
                     /translation="MNTIKLKKGSKSFIWYIAVLLISLVTVFPLIWTVSTSFKPTSEI
                     LSNSMNLIPKMFTWDNYKDVFSTTPFARYLVNSLILAVGGVLTNLFFGSLAGYAFAKL
                     PFKGKKGLFMTFLGSMMIPAVVTMIPSFLVLKNFPLMGGNDITGHGGMGFINTYWAIL
                     IPGAAGAFSIFFMKQFFETLPDELSEAARIDGCSEFKIFWKIYMPLAKTALATLGIMT
                     FQAGWNQFMWPLIVLNSQKMMTVQVGLASFQYNESANYGALMAGTIVSTIPVLFVFIF
                     AQKYFVEGIAHNGGK"
     gene            1550..2803
                     /locus_tag="U0342_002567"
     CDS             1550..2803
                     /locus_tag="U0342_002567"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2423896.1"
                     /translation="MKKVLLAILSMVLLLSLAACGGSSDSSKDKDGKEEIVMWGSWSG
                     DQIKQLEKQIDSYNKSQDKYKVKYVMQENVEEKLLTGIAGGELPDIIMWDRYQTALYA
                     PKGVLEPLDKLVKEDNVKMDDFYEESVKEMTYSDKLYGLPLLNDNRILFYNKKLLQEA
                     GVKPPTTWDELATAAQKTTKWDGNKMTQAGMSLQDVGLFNLYLMQAGGELVTSDNKET
                     AFNSEQGLEVLNYWDKMQNDLKVYQRGFDDGSDAFAAGKEAMTYNGPWALADYNKVED
                     LDYGVVEPPKGPNGDKGAIMGGFGLVMPKQAEHKDGAWDFMKWWTTKPENGVEFAKIS
                     GWLPANKIAAEDEYFTKDPNYSVFVNTMKYAEIRPTVAGYADVEGLAMKPQFEKFMNG
                     NISAEKALSQAEKEGNQILKEERDK"
     gene            2807..3835
                     /locus_tag="U0342_002568"
     CDS             2807..3835
                     /locus_tag="U0342_002568"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase"
                     /protein_id="HEM2423897.1"
                     /translation="MKWSEYANLAQLSLEKFYLADTKEQFLNNFYPTENPEEDNKVFN
                     YWWLAHLVEVRLDAYLRTKKQADLEIAENTYLHNKNRNGGTLIHDFYDDMLWNALAAY
                     RLYKETGKPIYLEDAQLVWQDLVDTGWNNIMGGGFAWRRPQMYYKNTPVNAPFIILSC
                     WLYNEFNETKYLEWAMKTYEWQTKVLVREDGFVEDGINRLEDGAIDYEWKFTYNQGVY
                     IGANLELYRITKDAKYLDTANKTADISLKELTEDGIFKDEGSGGDEGLFKGIFYRYFT
                     DLMEETANKTYRNFVFNSCQVLVDNAKLDGYLLMGMNWKENPSGKIPYSAELSGMIAL
                     EMAAKLER"
     gene            complement(3847..>4814)
                     /locus_tag="U0342_002569"
     CDS             complement(3847..>4814)
                     /locus_tag="U0342_002569"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEM2423898.1"
                     /translation="LKKDGYISRRPRVGTFVLNASPVSEQIETRMFDKPLFGCIMTNF
                     DDTFGTTLLSGMLEHSDSKAHIIVKKSLGDTEREEEILQEFIEMNVAGILILPASSKF
                     VSPTLLELASQKFPLVVIDRTLEGLPISSISSDNTEAGRIITEKLFELGHKHIGMITS
                     TSPVSTLDSRVNGFIRGHASFHTAFHSDYVFREIESVMPNSTVSIQTDIDKIAHFLNT
                     HSEITALVATEYNIALLIKQACNKLGKSIPGDLSVVSFDHPDNFFDNSAFQFTHIKQA
                     QYEIGVKAVDMLLNQVLKPDTINKETLPPMLIEGDSVKMLKSTSK"
BASE COUNT         1605 a          724 c          993 g         1492 t
ORIGIN      
        1 ttgtaccact tggtcttgca gcatcgcttg gggctgctat cttgattaat atgaataaaa
       61 aaggggctgg cttgtttcgg acattttttt atgtgccggt attatgctct acggtagcaa
      121 ctgcgacaat atggtattgg ttgcttaatc ctcagtatgg tttgattaat cgtgttttag
      181 gatggtttgg aattaatggc ccagcatggc tctatgattc gaactgggcg atgtttgcga
      241 ttgtgatgat gagtgtttgg atgacatttg gaacaaatat gatgattttt cttgccggtc
      301 ttcagggtat cccggctaac ttatatgaag cttctaaaat agaaggagct tcaagatgga
      361 agacatttcg ttatgtcact tggccatccc tttcacggac cactttcctc gtaacaacaa
      421 tgctaattat caacgctttt caggtgttcg atcaagcata tgttttaaca aaaggcggtc
      481 caggaaactc aactattacg cttgtctact acatttacaa tgaaggattc ggaggattaa
      541 aaatgggcta tgcttccgca atttcttttg tgttattttt aatcatacta gtattttcga
      601 ttatcaatat gcgtgtaaat aaagaagata ggacagctta aggagggttg atatgaatac
      661 cataaaatta aaaaaaggga gcaagtcgtt catttggtat attgctgtac ttctaattag
      721 tttagtgact gtttttccac ttatttggac agtatctact tcctttaaac caacaagtga
      781 aattttaagt aatagtatga atttaattcc taaaatgttt acttgggata attacaaaga
      841 tgtttttagt acaaccccat ttgcccgcta cctagtcaac tctttaatac ttgcagttgg
      901 tggtgtgctc actaatttat tcttcgggtc attagcaggt tatgcttttg ctaagctacc
      961 ttttaaaggg aaaaaaggtc tttttatgac atttttagga agcatgatga ttccagcagt
     1021 agtaacaatg attccatctt tcttagtatt aaagaatttc ccgttgatgg gcggtaatga
     1081 tattactggt catggtggta tgggttttat aaatacttac tgggcaattt tgattccagg
     1141 agccgctggg gcattttcga tctttttcat gaaacagttt tttgaaacgt taccagatga
     1201 actttctgaa gctgcaagaa tagacggttg ttcggagttt aaaatctttt ggaaaatcta
     1261 tatgccgctt gctaaaactg cattagctac tcttggaata atgacattcc aggctggctg
     1321 gaaccagttc atgtggccat taattgttct taattcacaa aaaatgatga cagttcaagt
     1381 aggacttgct tcttttcaat ataatgagag cgccaattat ggggctttaa tggctgggac
     1441 aattgtttct accattccag tattatttgt atttattttt gcacaaaaat attttgtaga
     1501 aggtatcgcg cataatggcg gtaaataaac caaaaaagga gtgtatagga tgaaaaaagt
     1561 attgttagca attcttagta tggtgttgtt gctcagttta gcggcttgtg gtggaagttc
     1621 agacagtagt aaggataagg acggaaaaga agaaattgtt atgtggggct cttggtcagg
     1681 agatcaaatt aaacagttag aaaaacaaat cgatagctat aataagtcac aagataaata
     1741 taaagtaaaa tatgtaatgc aagaaaatgt agaagaaaaa ttattaacag gaattgcagg
     1801 tggcgaactc cctgatatta ttatgtggga tcgctatcaa acagctcttt atgcaccaaa
     1861 aggagtgctt gaaccgctag ataaacttgt caaagaagac aacgtgaaga tggatgattt
     1921 ttatgaagaa tcagtgaaag aaatgaccta tagtgataaa ttatatggtt taccgttatt
     1981 gaatgataat cgaattctgt tttacaataa aaaattatta caagaagctg gcgtaaaacc
     2041 accaactacg tgggatgaat tagcaactgc tgcgcaaaaa acaacgaaat gggatggaaa
     2101 taaaatgacg caggcaggaa tgtcacttca agatgttggc ttgtttaact tgtatttaat
     2161 gcaagcaggt ggcgaactag taacttctga caataaagaa acggcattca attcagaaca
     2221 aggcttagaa gtactaaatt attgggataa aatgcaaaat gatttaaaag tgtaccaacg
     2281 cggttttgat gatggctccg atgcttttgc agccggaaaa gaagcaatga catacaacgg
     2341 tccgtgggct ttagcagatt ataataaagt agaagacctt gattatggtg tagtagaacc
     2401 acctaaagga ccaaatggcg ataaaggcgc tattatgggc ggatttggat tagtaatgcc
     2461 taaacaagcc gaacataaag acggcgcatg ggactttatg aagtggtgga caacgaaacc
     2521 agaaaatggc gtagaatttg ccaaaattag tggttggtta ccagcaaaca aaattgctgc
     2581 tgaagatgaa tattttacga aagacccaaa ttattctgtt tttgtaaata caatgaaata
     2641 tgctgaaatt cgtccaactg tggcaggcta tgcagacgta gaaggtttag caatgaaacc
     2701 tcaatttgag aaattcatga atggtaatat ttcagctgaa aaagctttat cacaagctga
     2761 aaaagaagga aaccaaattt taaaagaaga gagagataaa taaacgatga aatggtccga
     2821 atatgcaaat ttagctcaac taagtttaga aaagttttat cttgccgata caaaagaaca
     2881 atttttaaat aacttttatc cgacagaaaa tcctgaggaa gataataaag tttttaatta
     2941 ttggtggcta gctcacttgg tggaagtacg attagatgca tacttacgta caaaaaaaca
     3001 agcagatttg gagatagcgg aaaacacata tttgcataat aaaaatagaa atggtggaac
     3061 gcttattcat gatttttatg atgatatgct ttggaatgca cttgcggctt atcgtctata
     3121 taaagagact ggaaaaccaa tttatctaga agatgcacag ttggtttggc aggatttagt
     3181 ggatactggt tggaataaca taatgggagg tggctttgct tggcgtcgac cacaaatgta
     3241 ttataaaaac acgcctgtaa atgcaccgtt cattattctt tcttgttggc tatataatga
     3301 atttaatgaa acgaaatatt tagagtgggc aatgaagacc tatgaatggc aaactaaagt
     3361 ccttgtacgt gaagatggtt ttgtagaaga tggcattaat cgtttagaag acggagccat
     3421 tgattatgaa tggaaattca cttataacca aggtgtatat attggagcta atttagaatt
     3481 atatcgtatt actaaagacg caaaatattt agatactgcg aataaaactg cagatatatc
     3541 attaaaagaa ttaacggaag atggtatatt taaggatgaa ggcagcggcg gagatgaagg
     3601 actattcaaa gggatttttt acagatattt tactgattta atggaagaaa ccgcaaataa
     3661 aacttatcgg aattttgtat ttaatagctg ccaagtgcta gttgataatg caaaattaga
     3721 tggatatttg ttaatgggaa tgaattggaa agaaaatccc tctgggaaaa ttccttattc
     3781 agcagaatta agtggaatga tcgcacttga aatggcggca aaactagaac gataaaaaag
     3841 cacctcctac ttggaggtgc tttttagcat tttgaccgaa tctccttcta taagcattgg
     3901 aggtagagtt tctttgttta tagtatctgg ttttagcact tgatttaaaa gcatgtcaac
     3961 tgctttcacg cctatttcgt attgggcttg tttaatatgt gtaaactgga aggcagagtt
     4021 atcaaaaaaa ttatctggat gatcaaaact aacaacggat aaatcaccag gaatggattt
     4081 ccctaacttg ttgcatgctt gttttatcaa aagagcaata ttgtattcag ttgctacaag
     4141 tgccgtgatt tcagaatgtg tattcaaaaa atgtgcaatt ttatcaatat ctgtttggat
     4201 ggaaacggtt gaatttggca ttactgattc tatttcgcga aaaacataat cagagtgaaa
     4261 agctgtgtga aaagatgcat gccctcgaat aaatccgttt actcgactat caagcgtaga
     4321 gactggacta gtagatgtta tcattccaat atgcttatgc ccaagttcaa ataatttttc
     4381 tgtaataatt cgaccagctt ctgtattatc tgaactaata gaagatattg gtaagccttc
     4441 taatgtacga tctatgacaa ctaaaggaaa tttttgagaa gcaagttcta gtaaggtcgg
     4501 tgaaacaaac ttcgaactag caggtaaaat cagtatccct gcaacattca tttcaataaa
     4561 ctcttgcaaa atttcttctt ctcgctctgt atcgccaagt gattttttta caataatatg
     4621 agctttagag tcactgtgct ctaacatccc agataataaa gtagtaccaa aagtatcgtc
     4681 aaaatttgtc ataatacaac caaaaagggg tttatcaaac attctagttt ctatttgttc
     4741 gctaactggc gaagcattaa gtacaaaagt accaacccga gggcgtcttg aaatataacc
     4801 atctttcttt aata
//
LOCUS       DASEAA010000186         4779 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.186, whole genome shotgun sequence.
ACCESSION   DASEAA010000186 DASEAA010000000
VERSION     DASEAA010000186.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4779)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4779)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4779
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.186"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..357)
                     /locus_tag="U0342_002570"
     CDS             complement(<1..357)
                     /locus_tag="U0342_002570"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEM2423899.1"
                     /translation="MGLNIPPKPESSLWTDDQWKAIQAEGNNVLVAAAAGSGKTAVLV
                     TRIIEKLINESANLNVDELLIVTFTNASAAEMKFRIGKGLEEALAQNPDSTHLKRQVA
                     LLNYASISTLHSFCLEI"
     gene            complement(359..3832)
                     /gene="addB"
                     /locus_tag="U0342_002571"
     CDS             complement(359..3832)
                     /gene="addB"
                     /locus_tag="U0342_002571"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465792.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddB"
                     /protein_id="HEM2423900.1"
                     /translation="MTLQIIAGRSGTGKTTYLMDEVSVKIKQNSKTYIFIVPDQMTFQ
                     METSFLNKENLEGMLGTQIFSFSRLAWKILQETGGLSKTFLSQTGIEMVIRKAALDQR
                     DKLKIFSRATSRKGFYAELANLFKEMKQEEVSIEDMVKSATNLSTSVNNKIHDISIIY
                     QKYEELLADKFLENEDYLRLLAEKITESDYLNQTEIVIDGFTSFSQQELTVIGALMRK
                     CDKVTVSLALNVPEIKHGLDEYSMFKASTEAYYALLELAKLNGINVEEDKFFLENKRA
                     KTESLAFLANAWGHNKFMAFKEEPHNLSVHQANNRRAEIEGVAREIRQLTLNGYRYQD
                     MAILTRNLGDYDVLCETVMESYNIPIFIDKKRAMSKHPFIEFIRSSLDAILFNWKYEP
                     IFQAVKTEFFFGVAEKSSVLRRKADILENYVLENGIQNKWKWEKEGDWIYRKIRGLST
                     NVLPQTDEEIQTQSIINEMRSLIVNPLSTLELNLKKAKTGMEFALALYHFLEQVNAVE
                     RLESWRQRAEEQGYLELAREHEQAWSAISALLDEFVEVLGEETLDLNSFVEIIATGLD
                     ALEFSLLPPSLDQVVLSDMENAKLLDMKVIFAIGMNDGVMPLRQKDNGILSDQDRDAL
                     RAEVSNLKPSAKNNIGEEDLLAYKIISLPSDKLFLSYPAADEEGKVLSESNYLRKIKG
                     QFKKLSESVYLTDPGLLSDAEQSSYIRSKQATLGLLTSQLQMYKRGYPLSSVWWDAYN
                     SYFENGKESRMAKQVLSSLYYENKTKPLQEKTAKNLFGETIHASVSRMEKFFSCEFQH
                     FAQYGLKLEERGHFQLQAVDMGEIFHGAMEWISAELKRNNLDWGSLTDQECRQMAKLA
                     MTFLAPKIQHEILLSSKRMEYIQYKLLQIITRATTVLNEQAKSSAFRPVGLEVDFGLK
                     GDIPPLKISLQANSELLLQGRIDRIDMAEQEDRTFLRIIDYKSSSHDLALTEVYYGLA
                     LQMLTYLDIVVTNAQKMIGKTAEPAGVLYFHMHNQYVQAEKELSDEAIAKELQKNSKM
                     KGLILSDPVAVSLMDTTLEKGKSSNIVPAEIKQNGELSARSKTATREEFDKMRHFVRH
                     KYQEAGNKILDGAVSINPYKLKERTPCQFCGFRSFCGFDPSLASNQYRHLTNEKTETI
                     LAKMDIEGGGQ"
     gene            complement(3982..4338)
                     /locus_tag="U0342_002572"
     CDS             complement(3982..4338)
                     /locus_tag="U0342_002572"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465793.2"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="IDEAL domain-containing protein"
                     /protein_id="HEM2423901.1"
                     /translation="MVICKSLDFGKVVFSSCFLFFLSILQFFKIVINMSEGVVVVEMR
                     DFSNSLMNQVGVLKGEKELTNVFIECFLTMLLEERKLEQLRAEIDKALDNRNKAEFMK
                     LTEKMNKIQQEMLAFD"
     gene            4469..>4779
                     /locus_tag="U0342_002573"
     CDS             4469..>4779
                     /locus_tag="U0342_002573"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HEM2423902.1"
                     /translation="MKKEQISTQFYEVNPHTMIIFPKKSGSIVYSEIYEVDSHYTSKF
                     TPFELIKTSCNFFGSSYEGRKEGTKHLIGVTHKPPIIIDPVTSTYVFPTVAPSSTECI
                     W"
BASE COUNT         1427 a          959 c          684 g         1709 t
ORIGIN      
        1 aatttctaag caaaaagagt ggagagtgga aatagaagca tagttaagta aagccacttg
       61 cctttttaaa tgggtagaat ctggattttg agctagagct tcttccaagc ctttcccaat
      121 tctaaacttc atttcagcag cagatgcatt agtaaaagtt acgattagca actcgtcaac
      181 atttaagttc gctgactcat ttattaactt ctcaataatt ctggttacta atacagctgt
      241 cttccctgaa ccagcagcag cagctacaag cacattgttc ccttcagctt ggatagcttt
      301 ccactggtca tctgtccata aagaactttc tggttttggc ggtatattta atcccatgct
      361 actgtccccc cccttcgata tccatttttg ctaaaattgt ttctgttttt tcattggtta
      421 aatgtctata ttgattgctt gctagagatg gatcaaatcc acaaaatgaa cgaaaaccac
      481 aaaattggca aggtgttctt tcttttagtt tatatgggtt aatggaaact gctccatcaa
      541 gtattttgtt cccagcttct tggtatttat gacgtacaaa gtgacgcatt ttatcaaatt
      601 cttctcttgt cgcagttttt gacctcgcac ttaattcacc attttgtttt atttctgctg
      661 gaacaatatt agatgattta cctttttcaa gtgtcgtatc catcaatgat acagccacag
      721 gatcagataa aattaatcct ttcattttag aatttttttg taattctttt gcgatagcct
      781 catcacttaa ctctttctcc gcttgtacat attgattatg catatggaaa tatagtactc
      841 cagctggttc tgccgttttg ccaatcattt tttgtgcatt tgtaactaca atatccaaat
      901 acgtcagcat ttgaagcgct aagccataat aaacttccgt aagagccaaa tcatgtgaac
      961 tcgatttata atctataatg cgtaggaatg tccgatcttc ttgttctgcc atatcaatcc
     1021 tatcaattcg accttgtaaa agaagttcac tattcgcttg gagcgaaatt tttaatggcg
     1081 gaatgtctcc ttttaagcca aaatcaactt ctaagccgac tggacgaaat gcactacttt
     1141 ttgcttgttc atttagtact gtcgttgccc tcgttatgat ttgaagcaat ttatactgaa
     1201 tatattccat tcttttggag ctaagtagta tctcatgctg aattttaggc gctaggaaag
     1261 tcattgctaa tttcgccatt tgtctacatt cttggtctgt taaactgccc caatccagat
     1321 tatttctttt taattctgct gaaatccatt ccattgctcc atggaaaatt tcacccatat
     1381 ctacagcttg tagctgaaaa tgacctcgtt cttctaattt taaaccatat tgagcaaaat
     1441 gttgaaattc gcaactgaaa aatttctcca ttctcgagac actcgcatgg attgtttctc
     1501 caaataagtt tttggcagtt ttttcttgta gtggttttgt tttattttcg taatacaaac
     1561 tagataacac ttgtttagcc attctagatt cttttccatt ttcaaaataa ctattatagg
     1621 catcccacca tacactagat agtggataac ctcgtttgta catttgtaat tgactcgtca
     1681 acaaacctaa tgttgcttgc ttagaacgaa tataactact ttgttccgca tcacttaata
     1741 aacctgggtc tgttaaataa accgattcgc ttaatttttt aaattggcct tttattttcc
     1801 ttaaataatt ggattcactt agcactttac cttcttcatc cgcagcaggg taactaagaa
     1861 atagtttatc actaggcaaa cttattattt tatacgccaa taaatcttct tctccaatat
     1921 tatttttagc agatggcttc aaattactaa cctcagcacg caaggcatcc ctatcttgat
     1981 ccgaaagaat cccgttatcc ttttggcgaa gcggcataac accatcgttc attccaattg
     2041 caaaaatcac tttcatatct agtaatttcg cattctccat atcagataaa actacttgat
     2101 ctaaggaagg tggcaaaagt gaaaattcaa gggcatctag cccagtggca ataatttcta
     2161 caaaactatt taagtctaaa gtttcttcac ctaaaacttc tacaaattca tccaaaagcg
     2221 ccgaaatagc gctccatgct tgctcgtgct cacgtgcaag ttctagataa ccctgctcct
     2281 ctgctctttg tctccatgat tccaatcgtt ctacagcatt tacttgttct aaaaaatgat
     2341 aaagagctaa agcaaattcc atccctgttt ttgctttctt tagatttaac tctaaagttg
     2401 aaagtgggtt tactataaga cttctcattt cgttaataat tgattgcgtt tgaatttctt
     2461 catctgtttg aggtaacaca ttagttgata gcccacgaat cttccgataa atccaatcgc
     2521 cttctttttc ccatttccat ttattttgaa tgccattttc taatacatag ttctctagaa
     2581 tatccgcttt acgtctaaga acacttgatt tttcggcaac accaaagaaa aactctgtct
     2641 taactgcttg aaagattggt tcatacttcc aattaaacaa aatagcatct aagctagaac
     2701 ggataaactc aataaatggg tgtttcgaca tagctctttt tttatcaata aagatgggaa
     2761 tattatatga ctccatcact gtttcacata aaacgtcata atctccgaga tttcttgtca
     2821 aaatagccat atcttgatat ctgtatccat ttaatgtgag ttgacgaatt tcacgagcaa
     2881 ccccttctat ttcagcacgt ctgttgttcg cttgatgaac acttaagtta tgaggttctt
     2941 ctttaaaagc cataaattta ttgtgacccc aagcatttgc taaaaatgct aatgattctg
     3001 tttttgcccg tttattctct aagaaaaact tatcttcttc tacattaata ccatttaatt
     3061 ttgccagctc taataaagca tagtaagcct ccgtacttgc tttaaacatg ctgtattcat
     3121 ctaatccatg cttgatttcg ggcacattta aagctaaaga aactgttact ttatcacatt
     3181 ttcgcattaa tgcaccaatg actgtcagct cttgttgcga gaaagaagta aagccatcaa
     3241 tgactatttc cgtctgattt aaataatcac tttctgtaat tttttccgca agtaatctca
     3301 agtaatcttc attttcgagg aatttatctg ccaataattc ttcatacttt tgatagatta
     3361 ttgatatatc gtggatttta ttgttcacac ttgtagacag gttagtagcg cttttcacca
     3421 tatcttctat agaaacttct tcttgtttca tttctttaaa taaattcgct aactctgcat
     3481 agaaaccttt tctagacgta gctctagaaa agatttttag tttgtctctt tgatcgagtg
     3541 cagcttttct aataaccatt tcgattccag tttgactcag aaaagtttta gataacccac
     3601 ccgtttcttg aagtattttc catgctaaac gactaaaact aaatatttga gtcccgagca
     3661 ttccttctaa attttctttg tttaaaaagc ttgtctccat ttgaaacgtc atttgatccg
     3721 gaacaataaa gatgtatgtc ttagaatttt gtttaatttt tacgctaact tcgtccatta
     3781 aataagttgt tttacctgtg cctgatctac ctgcaattat ttgaagtgtc ataccctcac
     3841 caccgaacat atgtttttat ttagtttacc atatttgagc aatctgtcca gaactttttt
     3901 cgaagcattt tttgcttgaa aatttataaa acagctcaaa aaaactaaga tagctcttac
     3961 tatcttagtt tttcatatat tctagtcaaa agctagcatt tcctgttgaa ttttattcat
     4021 tttttctgta agtttcataa attccgcttt gttcctatta tcgagagctt tatcaatttc
     4081 agctctaagt tgttctaatt ttctctcttc taggagcatc gtcaggaagc attcgataaa
     4141 aacgtttgtt aattcttttt cacccttaag gacacccacc tgattcatca acgaattaga
     4201 aaaatcacgc atttccacga ctaccactcc ttcactcata tttattacaa ttttgaaaaa
     4261 ttgtaatata ctaagaaaaa acagaaaaca gcttgaaaat acaactttac caaaatctaa
     4321 tgacttgcaa attaccatgt gctataatga caaaaaataa ctcataacta actttgatgc
     4381 ttagtcgtta cttagaagtt ttgcttatta ggcaataact ctaggtttct tcttagacat
     4441 aaatacaaac atagaggagt tgaatgaaat gaaaaaagaa caaatcagta ctcagtttta
     4501 tgaagtaaac ccgcacacaa tgattatttt tccaaaaaaa tctggaagta tagtctattc
     4561 agaaatttat gaagttgatt cccattatac ttctaaattt accccgtttg aactaattaa
     4621 aaccagctgt aactttttcg gatcaagcta tgagggacgc aaagagggaa ctaaacactt
     4681 aattggtgtt acccataagc cacccattat cattgaccca gtcacttcta cttatgtatt
     4741 tccaactgta gcacctagtt caacagaatg tatttggat
//
LOCUS       DASEAA010000187         4777 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.187, whole genome shotgun sequence.
ACCESSION   DASEAA010000187 DASEAA010000000
VERSION     DASEAA010000187.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4777)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4777)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4777
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.187"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..781)
                     /locus_tag="U0342_002574"
     CDS             complement(<1..781)
                     /locus_tag="U0342_002574"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012582046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase family protein"
                     /protein_id="HEM2423903.1"
                     /translation="MKEKEYDLQLSNIKGILIFLVMLGHYLLTMGPKQVIPIDIIYSF
                     HMPAFIFISGIFSQNVTFKKIGRILGLFIIFQPLFILFGVVTGYYKDIDIKMLITPAF
                     HLWYLLALAVWMLFSMYANKRGKYAFDVLMLVLILFVAAVGNRYFYGTQFLTITRILS
                     FFPYFIIGFYLNRNGFDKVRNVLKKYKYICGIAVIILIVILYFFFSKQPNEFLYLFYG
                     FLDRMAFSSTTFGYLVNVFASFILAFTWIALLIAVVPTRRTI"
     gene            complement(886..1107)
                     /locus_tag="U0342_002575"
     CDS             complement(886..1107)
                     /locus_tag="U0342_002575"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423904.1"
                     /translation="MKQYVVVDYDDNNRVVIIDSDRSKCLSAIEMILGNDIAIGVYED
                     PDLDLEEIMKDEAWDNFGFAIFEHERTAI"
     gene            complement(1340..1717)
                     /locus_tag="U0342_002576"
     CDS             complement(1340..1717)
                     /locus_tag="U0342_002576"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423905.1"
                     /translation="MKVNLVEDQFNNLDGATLQVMYDKQQNLNLLMLTPEKNGDSVSI
                     WVDEKLSYKLFEALNTEKLSDLDEILFNTLKVVLQKYEYNFIATIAAAKENIEFMCAW
                     MQSKNQSAIIRKLAIWAEVEEQG"
     gene            complement(1734..2456)
                     /locus_tag="U0342_002577"
     CDS             complement(1734..2456)
                     /locus_tag="U0342_002577"
                     /inference="COORDINATES: protein motif:HMM:NF022432.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2786 domain-containing protein"
                     /protein_id="HEM2423906.1"
                     /translation="MDNEKIIRKVKRLLALAKENKSDEEGQSAFMLAQRLMLENDIDA
                     AEIGDNEDVSDFITENNVTIYKRLFWWEKRLARIIADNFRVKMFYDMKEDSGEITKSA
                     ITFYGLDKDLVLAKEMYLLAYEALLFHSKFYVNSYYENSEEKRSRYLTESLKSSYIRG
                     FLKGIERKFEEQISVLRNEFEILVLTPQIVIDAYKIRSEGFTKHKFKIPAVKEDGAYD
                     NGYKKGNSIDFTKSMISENVES"
     gene            complement(2484..2861)
                     /locus_tag="U0342_002578"
     CDS             complement(2484..2861)
                     /locus_tag="U0342_002578"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423907.1"
                     /translation="MEDMKKYEIKTIENGWTRLENYRDGYVVAIKSFQGICVNITNFS
                     SSSLHNYSIGDLENDPGDWSYIFDEQLLERVNGEDELKTVLEKYHLTEAEITEVLCYD
                     FDNRYSESYELQAKRIQAYMRNE"
     gene            complement(2862..3593)
                     /locus_tag="U0342_002579"
     CDS             complement(2862..3593)
                     /locus_tag="U0342_002579"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740257.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA/RNA non-specific endonuclease"
                     /protein_id="HEM2423908.1"
                     /translation="MKKKRVLTSILTLIILVLVTVSGYVVKNWEIYFPTVSFDEGTNI
                     ISEKIPTLAKVKYKGNQVISINNQIPIFTEGDLSLKNGSWQKFSDLDSLNRVGEANAM
                     LHNSMMPQDERESLYINPTGWKNKKTRTGWLYNRAHLVGFQLTGENNNPKNLMTATRS
                     LNTPYMLEYENRVANYLHETNNHVRYRVTPIFKDNELVARGVEMQAQSIEDDKLQFHV
                     YIFNIEEGMEINYADGTSKVERTDE"
     gene            complement(3590..3862)
                     /locus_tag="U0342_002580"
     CDS             complement(3590..3862)
                     /locus_tag="U0342_002580"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423909.1"
                     /translation="MIEYKDLPDYAYGYAKKNKKTVIIMKDTGEIIPCKAEDIPPMKL
                     NKEIGISPGVMTIMMLGHCKGFKYVKENMEELSLMAQAIDEKELKT"
     gene            4201..4464
                     /locus_tag="U0342_002581"
     CDS             4201..4464
                     /locus_tag="U0342_002581"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740253.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423910.1"
                     /translation="MSLKEIIESNEPTEIKEKQIDAYYQAELITRNEASELLNVTTKS
                     LDRYIKQNKVPTFINKSRNILLKKTEVEKMKPEVEKVKEIFHK"
     gene            complement(4511..>4777)
                     /locus_tag="U0342_002582"
     CDS             complement(4511..>4777)
                     /locus_tag="U0342_002582"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423911.1"
                     /translation="ESLGEYEVTTYFNIADMTLEQEFNDHDRKYTLVIQEYKSPLEFL
                     ADTENLSEDYLTNVSSEQALKAKEKYIQDETEFFIRQEALSFDY"
BASE COUNT         1495 a          941 c          571 g         1770 t
ORIGIN      
        1 atatagttct tctagtcgga actacagcaa tcagcaacgc aatccaagtg aacgctaaga
       61 taaatgatgc gaaaacattc actaaataac caaaagtggt gctactaaat gccattctat
      121 ctaaaaatcc ataaaataaa taaagaaact cattaggttg cttactgaaa aagaaatata
      181 gtattacaat tagtataatg acagcaatac cacatatgta cttatatttt tttaaaacat
      241 ttctgacttt atcaaatcca tttcggttca agtagaagcc tataatgaaa taaggaaaaa
      301 aactcagaat tctagttatt gtcaagaatt gtgtgccata aaaatatcta ttgccaacag
      361 cagcgacaaa taaaattaat acgagcatta atacgtcgaa agcatacttg cctcttttat
      421 ttgcatacat ggaaaataac atccataccg ccagtgctaa taaataccac aagtgaaaag
      481 ctggagttat tagcattttt atgtcgatat ccttgtaata ccccgttaca acaccaaata
      541 atataaataa tggctgaaaa attataaata ggcctaatat tcttcctatc ttcttgaatg
      601 ttacattttg gctaaatatt ccgcttataa aaataaatgc tggcatatga aacgaataaa
      661 taatatcaat tggtattact tgttttggac ccatcgttaa taaataatgg cctagcatta
      721 ctaagaatat aagaatacct tttatgttag acagttgaag atcatactct ttttctttca
      781 attaatcacc tcgttaagtt tatattaaaa ctatgtagga aatcatcgtt cttgtcaaca
      841 tgaaatatta tcgtcatacc ccccttctat ataaattacc tgcgattaaa tggctgtcct
      901 ctcgtgttca aagatagcaa acccaaaatt gtcccaggct tcatctttca taatttcctc
      961 taagtctaaa tctggatctt cataaactcc aatcgcaata tcattcccta aaatcatttc
     1021 tattgcactt aaacacttac ttctatccga gtcaataatc accactctat tgttatcgtc
     1081 ataatcgact actacatatt gtttcaaagt acccgtattt ttctcaactg ctttagtaat
     1141 actaaaattg ttagcactag gtaaataaat catcttaaat gtcattttca atagatcccc
     1201 ttctaaacta ttaggaaaat catatgtccc gtcagtttga ccataaaaat gtctaaatct
     1261 tagttttaat tcttgctcat accattcctt acttttttct ggtgttgtca ttgtttatcc
     1321 tctctttcgt tcctattttt cagccttgtt cttccacttc cgcccatatt gctaattttc
     1381 gaatgattgc cgattgattc ttactttgca tccaagcgca cataaattct atattttctt
     1441 tcgctgctgc tatcgttgca ataaaattat attcatattt ttgtaaaact acttttaatg
     1501 tattgaaaag aatttcatct aaatcactca atttttcagt atttaacgct tcaaaaagtt
     1561 tatagcttaa tttttcatcc acccatatac ttacagagtc accgttcttt tccggcgtca
     1621 acattaacaa gtttaaattt tgctgtttat catacataac ttgtagcgtt gcgccatcta
     1681 agttattaaa ttgatcttct actaaattta ctttcacgtt tgttcctcct ttgtcatgat
     1741 tctacgtttt cgcttatcat actcttagta aagtctattg aattaccctt tttgtagcca
     1801 ttatcatacg ctccatcttc ctttactgct ggtattttaa acttatgctt agtaaaaccc
     1861 tctgagcgta ttttgtaggc atcaatcact atttgtggcg ttaaaaccag aatttcaaat
     1921 tcatttctta atactgaaat ttgttcctca aattttcgtt ctataccttt gagaaaccct
     1981 ctaatataac ttgactttag gctttctgtt aagtacctac ttcttttttc ttcagagttt
     2041 tcataataac tattaacata aaatttacta tgaaataata atgcttcata tgctagtaaa
     2101 tacatctctt ttgctaatac taaatcctta tcaagtccat aaaacgtaat agcactttta
     2161 gtgatttctc cagaatcttc tttcatatca taaaacatct tcactctaaa attatcagca
     2221 attattctag caagcctttt ttcccaccag aataatcttt tataaatagt tacattattt
     2281 tctgttataa aatcactaac atcttcatta tctccaattt cagcagcatc aatatcattt
     2341 tccagcatta atctttgcgc tagcataaaa gctgattgac cttcttcatc gcttttattt
     2401 tcctttgcta acgctaatag acgtttaacc ttcctgataa ttttttcatt gtccattgca
     2461 ttccctcaat tctttttgat ttattattcg tttctcatgt atgcttgaat tcgtttcgcc
     2521 tgtagctcat atgactcact gtatctatta tcaaaatcat agcaaagtac ttcagtaatt
     2581 tcagcttctg ttagatgata tttctctaaa actgttttta attcatcttc tccatttact
     2641 cgctccagca attgctcatc aaagatataa ctccaatctc ctgggtcatt ttctaaatca
     2701 cctatactat aattgtgtaa cgatgaacta gaaaagtttg tgatattcac gcatattccc
     2761 tgaaatgact taattgcaac aacatatcca tcacggtagt tctctaaacg tgtccatccg
     2821 ttttcaatag tttttatttc atattttttc atgtcttcca tttattcatc tgtcctttct
     2881 acttttgaag tcccatctgc ataattaatt tccatgcctt cttctatgtt aaatatgtag
     2941 acgtgaaact gtaatttgtc atcttctatc gactgtgctt gcatttccac acctcgcgct
     3001 accagctcat tatctttaaa aataggtgta actcgatatc gcacatgatt atttgtttca
     3061 tgcaaataat tcgccactct attttcgtac tctagcatgt aaggagtatt taaactcctt
     3121 gttgctgtca ttaagttttt gggattatta ttttctcctg ttaattgaaa acctaccagg
     3181 tgcgccctat tatacaacca tcctgttctt gttttcttat ttttccaacc tgtcggatta
     3241 atatatagtg actctctttc atcttggggc atcatgctat tgtgcaacat tgcatttgct
     3301 tcccctacac ggttaagtga atctaagtcc gaaaactttt gccatgagcc gttcttcaat
     3361 gaaagatcac cttcagtaaa aataggtatt tgattattga tagaaataac ttgattacct
     3421 ttatatttta cttttgctag tgttggtatt ttttcactga taatatttgt tccttcatca
     3481 aaagatactg tcggaaaata aatttcccag ttttttacaa cataaccact tactgtcact
     3541 agtacaagaa tgataagtgt taaaatagaa gttaatactc gcttcttttt catgttttca
     3601 gctccttctc atcaatagct tgagccatta aacttaactc ttccatattt tcctttacgt
     3661 acttaaatcc tttacaatga cccaacatca taatagtcat gactccagga ctaataccta
     3721 tttctttatt taacttcatt gggggtatgt cttctgcctt acagggaatt atttcccccg
     3781 tatctttcat aataatgact gtttttttat tctttttagc ataaccatag gcataatctg
     3841 gcaaatcttt atattcaatc atttctctaa ctcctttcta agatgtacta ctcagaccac
     3901 ttttgtggta taattacgat ataacttttt tgtaagagta cctttttgaa gtggctgctt
     3961 ctcgggtact ctttttttcg catctatcca tatcctcatt ccggcgaaac atagtattat
     4021 cagcataaat aatgctacca tcacttctaa accatacatt ttaccacctc atttctatac
     4081 atttattata ccctaatatg tccacttagt caacatatta gggtatttaa tagacataac
     4141 tgtcctttta gtttacacaa taaaatcctt gtgctaaaat caaatagagg tgacaacaat
     4201 atgagtttaa aagaaataat tgaatctaat gagccaactg aaattaagga aaaacaaata
     4261 gatgcctact atcaagcaga gcttatcact agaaatgaag ctagtgaact acttaacgtt
     4321 actaccaaat ctttagatag atatataaag caaaataaag tacccacatt cataaataaa
     4381 agtcgaaata tcttattaaa aaaaactgaa gttgaaaaaa tgaaacccga agtagaaaaa
     4441 gtaaaagaaa tcttccataa gtaaaagcac ttactcaagt attattgact aagtgctttt
     4501 ttctggtaat ctagtaatca aaacttagcg cttcttgacg aataaaaaat tccgtttcat
     4561 cttggatata tttttctttc gcttttaaag cttgttcaga agatacgttc gttaaataat
     4621 cctcgcttaa attttctgtg tctgccagaa actctaaagg agatttatat tcttgaataa
     4681 ctagtgtata ttttcgatca tgatcattaa actcttgttc taatgtcata tcagctatgt
     4741 taaagtacgt agtaacttca tattccccta aactctc
//
LOCUS       DASEAA010000188         4773 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.188, whole genome shotgun sequence.
ACCESSION   DASEAA010000188 DASEAA010000000
VERSION     DASEAA010000188.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4773)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4773)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4773
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.188"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            114..1109
                     /gene="trpS"
                     /locus_tag="U0342_002583"
     CDS             114..1109
                     /gene="trpS"
                     /locus_tag="U0342_002583"
                     /EC_number="6.1.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465722.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tryptophan--tRNA ligase"
                     /protein_id="HEM2423912.1"
                     /translation="MKKVIFSGIQPSGQLTLGNYIGALKQFGQFQDEYECFYCIVDEH
                     AITVPQDRLKLREQTRSLAALYLAVGLDPEKATLFIQSEVAAHAQAAWILQCNVYIGE
                     LERMTQFKDKSDGKAGVSAGLLTYPPLMAADILLYQTDLVPVGEDQKQHIELTRDLAE
                     RFNKKHADIFTMPEVFIPKQGARVMSLQDPTKKMSKSDANLKNAIFLLDPPATIRKKI
                     KSAVTDSSGIIEYNKEEKPGVSNLLTIYSVITGETISTIEEKYVGKGYGDFKTDLAEL
                     VVAELEPIQERYYAYLKSEELDTILDAGAEKAARVANKTLKKMENGVGLGRKRRR"
     gene            complement(1165..1581)
                     /locus_tag="U0342_002584"
     CDS             complement(1165..1581)
                     /locus_tag="U0342_002584"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465723.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="organic hydroperoxide resistance protein"
                     /protein_id="HEM2423913.1"
                     /translation="MKKLYETTVINTGGRSGEVHSPDNVFYFDISAPTELGGDGGGGT
                     NPEQLFAAGYGACFNSALELVLGKAGIEAKSTVTATVSLYSDPEDNGFKIGVVLEGTI
                     EGQDKEKTEALLKKAHEVCPYSKATRGNIDVEIKVG"
     gene            complement(1565..2017)
                     /locus_tag="U0342_002585"
     CDS             complement(1565..2017)
                     /locus_tag="U0342_002585"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465724.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MarR family transcriptional regulator"
                     /protein_id="HEM2423914.1"
                     /translation="MDTNTRILEEQLCFSVYNASKQFTKLYREALEPFQLTYPQYIAL
                     LVLWEVEEQTVSELGKRLALDSGTLTPMLKRMEHLGYVTRSRHPEDERRVYIRLTEKA
                     IKIQPDVLKSVDNCLQLLDFKELDYTQLLTKIQSLTKQLGGIENEKII"
     gene            complement(2139..3380)
                     /gene="fabF"
                     /locus_tag="U0342_002586"
     CDS             complement(2139..3380)
                     /gene="fabF"
                     /locus_tag="U0342_002586"
                     /EC_number="2.3.1.179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465725.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="beta-ketoacyl-ACP synthase II"
                     /protein_id="HEM2423915.1"
                     /translation="MDKRRVVVTGIGAVTPIGNDAETSWENAKKGVNGVAKMTRLNPD
                     DFPVKIAAELKDFDVEKYLEKKEARKMDRFTHYAIASAEMAVQDSGLVIDDSNANRVG
                     VWIGSGIGGMETFETQYEIFLNRGHRRVSPFFVPMMIPDMGSGQVSIRFGAKGINSTT
                     VTACATATNSIGDAFKVIERGDADAMITGGAEAPITKMSLAGFTANKALSLNPDPETA
                     CRPFDKDRDGFIIGEGAGIVILEEYEHAKARGAKIYAEIVGYGATGDAYHITAPAPNG
                     EGAARAMKMAIDDAGLTPDKVDYINAHGTSTPYNDEYETQAIKTVFGDHAKKLAISST
                     KSMTGHTLGASGGIEAIFALLTIRDNIIAPTIHLKNQDEVCDLDYVPNEAREANVNVV
                     ISNSFGFGGHNATLVFKRIED"
     gene            complement(3583..4521)
                     /gene="fabH"
                     /locus_tag="U0342_002587"
     CDS             complement(3583..4521)
                     /gene="fabH"
                     /locus_tag="U0342_002587"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465726.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-oxoacyl-ACP synthase III FabH"
                     /protein_id="HEM2423916.1"
                     /translation="MNAGILGVGKYVPEKIVTNFDLEKIMDTSDEWIRTRTGIEERRI
                     ARDDEYTHDLAYEAAKVAIKNAGLTPDDIDLFIVATVTQEATFPSVANIIQDRLGAKN
                     AAGMDVEAACAGFTFGVVTAAQFIKTGAYKNIVVVGADKLSKITNWDDRTTAVLFGDG
                     AGAVVMGPVSDDHGLLSFDLGSDGSGGKYLNLDENKKIYMNGREVFRFAVRQMGEASL
                     RVLERAGLEKEDLDLLIPHQANIRIMEASRERLNLPEEKLMKTVHKYGNTSSSSIALA
                     LVDAVEEGRIKDNDNVLLVGFGGGLTWGALIIRWGK"
     gene            complement(4641..>4773)
                     /locus_tag="U0342_002588"
     CDS             complement(4641..>4773)
                     /locus_tag="U0342_002588"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SH3-like domain-containing protein"
                     /protein_id="HEM2423917.1"
                     /translation="IDRRADVKNEYWYRIKSDDGKVIGWSKADGFAENNPNKALEVK"
BASE COUNT         1436 a          983 c          807 g         1547 t
ORIGIN      
        1 cctttttagg tacttagggt ggcaccgcgg ataaccgttc gtccctaaca tttatatgtt
       61 gggatggacg gttttttatt ttcgctatca gtgaaaaaat tggaggaata aacatgaaaa
      121 aagtaatatt ttccggaatt caacctagtg gacaattaac tttaggaaat tatattggag
      181 ctttgaaaca gtttggtcag tttcaagatg aatatgaatg tttttattgt atcgttgacg
      241 aacacgctat tacggttcca caagatagat taaagcttcg tgagcaaaca agaagtttag
      301 cagctcttta tttagcagtt ggactggatc ctgaaaaagc gactcttttt attcaatctg
      361 aagttgcagc acatgctcaa gcagcatgga ttttacaatg taacgtatat attggcgaat
      421 tagaacgtat gacgcagttc aaagataaat cagatgggaa agcaggtgtc agtgctggcc
      481 ttttaactta cccaccattg atggcagctg atattttact ttatcaaacc gatttagttc
      541 ctgttggcga ggatcagaag caacatatcg aattaactcg cgacttagca gaacgattta
      601 ataaaaagca cgcagatatt ttcacgatgc cagaagtatt cattcctaaa caaggcgcac
      661 gagtaatgtc cttacaagat ccaacgaaaa aaatgagtaa atctgatgcc aatttgaaaa
      721 atgctatctt tttacttgac ccaccagcta ccattagaaa aaaaatcaaa agcgctgtaa
      781 ccgattctag tggtattatt gaatataata aagaagaaaa accaggtgtg tctaacttac
      841 taactatcta ttctgttatc actggcgaaa caatttctac tatagaagaa aaatatgttg
      901 gaaaaggtta tggcgatttt aaaacagatt tagctgaatt agttgttgct gaacttgagc
      961 caattcaaga aaggtactat gcttatctaa aatctgagga gctggacact atattagacg
     1021 caggagcaga aaaagctgct cgcgtggcta ataaaacatt gaagaaaatg gaaaatggcg
     1081 tggggcttgg ccgcaaacgc agaagataat ataaaaaagc caatgactag ttgatctaag
     1141 tcattggctt tttttattta aacattaacc tactttaatt tccacatcga tgttaccacg
     1201 agttgcttta gaatatggac aaacttcatg tgctttttta agtagtgctt ctgttttttc
     1261 tttatcttgt ccttcgatag ttccttctaa tacgacacca attttaaaac cgttgtcttc
     1321 tggatcacta tataagctga cagttgctgt tactgtgctc tttgcttcaa tcccagcttt
     1381 tcctagaact aattctaacg cgctattgaa acaagctccg tatccagccg caaatagttg
     1441 ttctgggttt gttccaccac cgccgtctcc accaagttct gttggcgcag aaatatcaaa
     1501 gtaaaatacg ttgtctggcg aatgaacttc accacttctt ccacctgtat taatgactgt
     1561 tgtttcatat aattttttca ttttctattc ctcctaattg tttcgttaac gattgtattt
     1621 tggtaagtaa ttgtgtgtag tctaattctt tgaaatcaag taattgaagg cagttgtcca
     1681 cgctttttaa tacgtcaggt tgtattttta ttgctttttc tgttaagcga atataaacgc
     1741 ggcgctcgtc ttccggatga cgactccgtg taacatatcc taaatgctcc attcgtttta
     1801 acataggtgt taaagttcca ctatctaaag ccaacctctt cccaagttct gatacagttt
     1861 gttcttcaac ttcccataga acaagcaaag caatatattg tggataggtt aattgaaacg
     1921 gctctaaagc ttcacgataa agtttagtaa attgtttgga tgcattataa acagaaaaac
     1981 atagttgctc ttctaatatg cgtgtattcg tgtccaacat gttctcctcc ttttaagttg
     2041 tgtacaattt aattgtaacc aatcataata atgaaagcta gttttttgct caaaaaaagc
     2101 cttacctcat ttttagaggt aaggcttttg attatatttt agtcttctat tcttttaaat
     2161 actaaagtcg cattgtgacc accaaagcca aaagagttag aaattactac atttacattt
     2221 gcctcacgtg cttcatttgg aacataatcc aagtcacaaa cttcatcttg gtttttcaaa
     2281 tgaatcgttg gtgcaataat attatcacga atagtcaata gggcgaaaat agcttctatt
     2341 ccgccagacg cacctagagt atgtccagtc attgacttag tagaactaat cgctaatttt
     2401 ttcgcatgat ctccaaagac agttttaata gcttgtgttt cgtattcatc attgtacggt
     2461 gtacttgttc cgtgggcatt aatataatct actttatcag gggtaaggcc agcatcatca
     2521 atcgccattt tcattgcgcg cgcagcacct tcaccgtttg gagctggagc agtaatgtgg
     2581 taagcatctc ctgttgcacc gtaaccaacg atttcagcgt aaatttttgc cccacgtgct
     2641 tttgcatgtt cgtattcttc taaaataacg atacctgcgc cttcaccaat aataaaacca
     2701 tcacgatctt tatcaaacgg acggcatgca gtttctggat ctggatttaa tgacaaagct
     2761 ttattagcag taaaaccagc aagtgacatt ttagtaatcg gcgcttctgc tccaccagta
     2821 atcattgcat cagcgtctcc acgctcaata actttaaacg cgtcgccgat tgagtttgtt
     2881 gcagttgcac aagctgtaac tgttgtagaa ttaatgcctt tagcaccaaa acgaatagaa
     2941 acctggcctg aacccatatc tggaatcatc ataggtacga aaaacgggct aactcggcga
     3001 tgaccgcgat ttaagaaaat ttcatattgt gtttcgaaag tttccattcc accaattcct
     3061 gaaccaatcc aaacaccaac tcggtttgca ttggaatcat caataactaa accagagtct
     3121 tgcacggcca tttcagcact tgcaattgca taatgcgtaa aacggtccat tttacgagct
     3181 tctttttttt ctagatattt ttctacatca aaatctttta attctgctgc aattttaacc
     3241 ggaaagtcat ccggattaag tcttgtcatt tttgcaacac cattaacacc tttttttgcg
     3301 ttttcccaag aagtttccgc atcatttcca ataggtgtaa cagctccaat accagtaaca
     3361 actactcttc tcttatccat ttactcatct ccttattttg cgattcataa aaaacaactt
     3421 ctgtccaatg acagcagcta gtataaagtt aaggctttat ttaaaattaa taatagtgca
     3481 caaacaaata aaccaaaagc ctgttccatt ataacataaa taaaggaaag ttgtcctaac
     3541 taaaataatc gttagggcaa ctttcctttt taaatttact gcttacttac cccaacgaat
     3601 gattagggcg ccccatgtta gtccgccgcc aaaacctacg agcagaacgt tatcattatc
     3661 tttaatacgt ccttcttcca ctgcatcaac gagcgcaagt gcgattgaag aggacgaagt
     3721 attaccatat ttgtgtactg ttttcatcag tttttcttct ggtaaattca aacgctcacg
     3781 agaagcttcc ataatacgaa tatttgcttg gtgaggaatt agtaagtcca agtcttcttt
     3841 ctcaagacca gcacgttcaa gtactcgtag tgaagcttct cccatttggc gaactgcaaa
     3901 gcggaatact tcacgaccgt tcatataaat ctttttattt tcatctaaat tcaagtattt
     3961 accacctgat ccatctgaac ctaagtcaaa tgaaagtaaa ccatgatcat cagaaactgg
     4021 tcccataact acagcacctg ctccatcacc gaataatact gctgttgtgc gatcatccca
     4081 gttagtgatt ttagataatt tatccgcacc gacaaccacg atatttttat atgcacctgt
     4141 tttaatgaat tgtgctgcag tcactactcc aaaagtgaaa ccagcacaag ctgcctcaac
     4201 gtccatacca gcagcgtttt ttgctcctaa gcggtcttgg ataatattag caactgaagg
     4261 aaatgtcgct tcttgtgtaa cagttgcaac gataaacaag tcaatatcat ctggtgtaag
     4321 accagcattc ttaatggcta cctttgctgc ttcatatgct aaatcatgcg tatattcgtc
     4381 atcacgagca attcttcttt cctcaatacc agttcgagtt ctaatccact catcagatgt
     4441 atccataatt ttttctaaat caaagttagt tactattttt tcaggtacgt atttacctac
     4501 tcctaaaatt cctgcgttca tgtgttctcc tccatatcaa actacatcag ggtgaaaata
     4561 aattttctcc tggttatttt tatgacctgg tgctaatttt aacagagaac tatcaattaa
     4621 gcaattggat tgctactttt ttattttact tctaacgctt tattaggatt gttttcagca
     4681 aaaccgtctg cttttgacca gccgattact ttcccatcgt ctgacttaat acggtaccaa
     4741 tattcatttt tcacatctgc acgacggtca ata
//
LOCUS       DASEAA010000189         4767 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.189, whole genome shotgun sequence.
ACCESSION   DASEAA010000189 DASEAA010000000
VERSION     DASEAA010000189.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4767
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.189"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..763)
                     /locus_tag="U0342_002589"
     CDS             complement(<1..763)
                     /locus_tag="U0342_002589"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465639.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2423918.1"
                     /translation="MTLFDLAKKNIRHNFVHYFLYFASMIFSIMIYFTFLVLSKDPSV
                     VARIDQSAKLSTAFSSSSVILLIFVAIFILYSNNFFTRKRKKEIGLYSLLGLRKKEIG
                     RMLFYENFIMGLGALIIGIIAGTLLSKLFVTILLNLINLDSIGGFAFSWAAVIQTSIV
                     FIIITLFTSFTGYRIIYRTTLLDLFHSESKREKSPKPSFILALLSILLIGLGYFIAGQ
                     PLDSKGSIWAQLGFSIGALVILASVIIGTALFITFF"
     gene            complement(750..1517)
                     /locus_tag="U0342_002590"
     CDS             complement(750..1517)
                     /locus_tag="U0342_002590"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465638.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423919.1"
                     /translation="METVLQAKNVRKIYGSKGNVYTALENISIDIKEGEFTGIMGPSG
                     AGKSTLLNVLSTIDKPTSGQIVISGQELENMNEQQMSTFRRDKLGFIFQDYNLLDTLT
                     IRENIILPLALAKRPVKEMEEKLAIISEKFGITEILDKYPSEISGGQKQRTAASRAII
                     TAPSLIFADEPTGALDSKSATNLLESLRDLNEQDKSTIMMVTHDAFAASFCKRILFIK
                     DGELYTEIYRGTKTRKEFFQKILDVLAKLGGDSDDVI"
     gene            complement(1713..2468)
                     /locus_tag="U0342_002591"
     CDS             complement(1713..2468)
                     /locus_tag="U0342_002591"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465637.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="heme-dependent peroxidase"
                     /protein_id="HEM2423920.1"
                     /translation="MNEAVKTLDGWFCLHDFRSIDWAAWRELNPGNQELMLNELSHFL
                     SDMEITKNIGEGEHTIYSILGQKADLVFFTLRDSLEALNEVENRFNKLAIADYLLPTY
                     SYISVVELSNYLASHMAGGEDPYQNKGVRARLYPALPPKKHICFYPMSKKRDGADNWY
                     MLPMEERQQLIRDHGLIGRSYAGKVQQIIGGSIGFDDYEWGVTLFSDDALEFKRIVTE
                     MRFDEASARYAEFGSFFIGNLLPSEQLSKLFTI"
     gene            complement(2552..2782)
                     /locus_tag="U0342_002592"
     CDS             complement(2552..2782)
                     /locus_tag="U0342_002592"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465636.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2423921.1"
                     /translation="MRQQQIDFKWLEENFLTANEAATYLGISKQALLSLAKRDVLPFT
                     KKGNMVLFHRMDIELRLENQQSLREKYRPFET"
     gene            2934..3665
                     /locus_tag="U0342_002593"
     CDS             2934..3665
                     /locus_tag="U0342_002593"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465635.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADPH-dependent oxidoreductase"
                     /protein_id="HEM2423922.1"
                     /translation="MNDVLTLLRNHRSFRKYKKGVEIPEGNLDAIIRAAQAAPSWING
                     QHYSIIAIKDQERKNKMAELCGNQPYIAECSVFLCFVADFHRVKVASDMHGKSFQIAG
                     EEDLLMVAATDIGLCMQNALTAAESLDYGTICIGGLRRNITATAEFLNLPEFVMPVVG
                     LCIGVPDVEAPVKPRLPKEAVYFEETYQTDVMPLLEAYDQEIIPFSEREGFVSYTERL
                     AKFYDRPYYPNLTEQIKERGFLGGK"
     gene            3745..4701
                     /gene="manA"
                     /locus_tag="U0342_002594"
     CDS             3745..4701
                     /gene="manA"
                     /locus_tag="U0342_002594"
                     /EC_number="5.3.1.8"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465634.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mannose-6-phosphate isomerase, class I"
                     /protein_id="HEM2423923.1"
                     /translation="MTEALFLNPVFQDRIWGGTKLHDYFGYDIPSDTTGEDWAISAHP
                     NGPSVIKNGEYKGKTLAELWQENPALFGNPKEAVFPLLTKILDANTDLSVQVHPNDEY
                     AKVHENGELGKTECWYIIDCAPGAELIYGHKAASKEEFATWAKNGEWDKLLRKVAIKP
                     GEFYYVPSGTIHALGTGTLVLETQQSSDTTYRVYDYDRKDAEGNLRELHLDKAIDVTT
                     APHVDAKLDIKTETRGGLTETTFVSNDFFSVYKWEVDGAAEFMAKAPYTLVSVLDGEA
                     VLTIDGTKQSIKKGDHFVLPNDVKSWEIDGKMTAIVSNPPVK"
BASE COUNT         1543 a          841 c          941 g         1442 t
ORIGIN      
        1 agaaaaaggt aatgaaaagt gcagtaccaa tgattaccga agctaaaata actaatgccc
       61 caatagaaaa gccaagttgt gcccaaatag aacctttaga atcaagtggt tgtccagcga
      121 taaaatagcc taaaccaatt aataaaatcg aaagtaaggc taagatgaat gaaggttttg
      181 gacttttttc gcgttttgat tctgagtgga acaaatcaag taaagtggtg cggtaaataa
      241 tacggtaacc agtaaatgat gtaaataacg tgatgataat aaagacaata ctcgtttgta
      301 ttactgctgc ccaagaaaag gcaaaaccac caatactatc aagattaatt aagttaagta
      361 aaatggttac aaaaagcttg gaaagtaatg taccggcaat aataccgatg attaatgcgc
      421 caagtcccat aataaaattt tcataaaaca acatgcgacc aatttctttt ttacgaaggc
      481 cgagtaaaga gtaaagtcca atttcttttt ttctttttcg ggtaaagaaa ttattggaat
      541 aaaggataaa aatcgctaca aaaataagta gaatgactga ggagcttgaa aatgctgtcg
      601 ataatttagc cgattggtca attctagcta caacagatgg atctttcgaa agaacaagga
      661 atgtaaaata aatcataatg ctgaaaatca tcgatgcaaa atataaaaag taatggacaa
      721 aattatgtcg aatatttttc ttagctaaat caaataacgt catctgagtc gccccccagt
      781 tttgcaagga cgtctagaat tttttggaag aactccttac gtgttttagt tccacgatag
      841 atttctgtgt ataattctcc gtctttaata aataaaattc gtttgcaaaa acttgctgca
      901 aacgcatcat gtgttaccat catgattgtt gatttatctt gttcatttaa gtcacgtaag
      961 ctttcaagta agttggttgc tgatttagaa tcaagcgcac cggttggctc atcggcaaaa
     1021 attaaacttg gtgcagtaat aattgctctt gaagctgcag tacgttgctt ttgaccacct
     1081 gaaatctcgc ttggatattt atcaaggatt tctgtaatgc cgaatttttc actgataatt
     1141 gctaattttt cttccatttc ttttactggg cgtttcgcta gtgcgagggg aaggataata
     1201 ttttcacgga tagttaatgt gtctagtaag ttgtaatctt ggaatataaa acctagtttg
     1261 tcacgtcgga aagtggacat ttgttgttca ttcatgtttt cgagttcttg tccggaaatc
     1321 acaatctgac cagaagtcgg tttatcaata gtagataaga catttagtaa cgtggattta
     1381 ccagccccag atggtcccat aattccagta aattcacctt ctttaatatc aatactgata
     1441 ttttctagtg cagtgtagac atttcctttg ctaccgtata tttttctcac attttttgct
     1501 tgtaaaactg tctccattat tttctctcct taaaaactag attcggttag tatatgtatc
     1561 attctatcgt gtatatagga ctcgttccat cgtatcaaat gacatttacg gtagatatcc
     1621 ttacaaaatt gttagtttag tgaaataaaa aaactggaat ccagctaaca aaatcagtca
     1681 tttgttagat tgaattccag tttttactta tattaaatag taaataattt agaaagttgc
     1741 tcggatggta acaggtttcc aataaagaaa gaaccaaatt cagcatatcg agcgcttgct
     1801 tcatcaaagc gcatttccgt tacgatgcgt ttgaactcca gtgcatcatc ggaaaataaa
     1861 gtgacgcccc attcataatc atcaaatcca atggagccac caatgatttg ttgtactttg
     1921 cccgcatagc ttctaccaat caagccatgg tcgcgaataa gttgttggcg ttcttccatt
     1981 ggaagcatat accaattatc agcgccgtcc cgttttttac tcattgggta gaaacaaata
     2041 tgctttttag gtgggagtgc tggatagagt ctcgcgcgaa cacctttgtt ttggtaagga
     2101 tcttcgccgc ccgccatgtg agacgctaga tagttactta attccaccac agatatatag
     2161 gaataagtcg gcaacaagta gtcggcaatc gctaatttat taaaacgatt ttcgacttca
     2221 ttcagcgctt caagggaatc acgcaaagtg aagaatacta aatctgcttt ttgaccaaga
     2281 atactgtaaa tggtatgttc accttcaccg atatttttag taatttccat atcgcttaaa
     2341 aagtggctga gttcatttaa cataagttcc tgattacctg gatttagttc acgccacgca
     2401 gcccagtcaa tcgaacgaaa atcatgtaga caaaaccatc catctaaagt ttttactgct
     2461 tcattcatta tgtatcactc cttgtttaga atatcactaa ctaaagtgta acatacggga
     2521 agtagttcgt ccgtttcgct gtttgtgaaa tttacgtttc aaaaggacgg tatttttcac
     2581 gtaagctttg ttggttttca agccgaagtt caatgtccat tcggtggaaa agaaccatat
     2641 ttcctttttt cgtaaagggg agtacatcgc gtttggctaa ggaaaggagt gcttgcttag
     2701 atatgcctaa gtaagtcgcg gcttcattcg cagtcaggaa gttttcttca agccatttaa
     2761 aatctatttg ttgttggcgc acatcttttc acctcttttt ctttaagtgt agaaaatatc
     2821 tggcagaaat acaagagaaa acattaacaa ttgcctaaaa acaagctata cattaacaat
     2881 tgcctaaaaa caagctatac tttaactaaa tgataaatct aggaggcata aatatgaatg
     2941 acgtattaac tttgctaaga aatcatcgct cttttcgtaa atataaaaaa ggggttgaga
     3001 ttccggaagg aaatctagat gcgattatcc gagcagctca agcagccccg tcgtggatta
     3061 atggtcaaca ctattcgatt attgcgatta aagatcaaga acgtaaaaat aaaatggccg
     3121 aactttgcgg aaatcaacct tacatagcag aatgttccgt ttttctttgt tttgtggcag
     3181 attttcaccg cgtaaaagta gcgagtgaca tgcacggcaa aagtttccaa attgccgggg
     3241 aagaagattt actaatggtt gcggcaacag acatcggact ttgtatgcaa aatgctttaa
     3301 cagctgctga gtcgcttgat tacgggacga tttgtattgg tggtttgcgc agaaatatta
     3361 cggcaaccgc tgaatttcta aatttaccag aattcgtcat gcccgttgtg ggactttgta
     3421 ttggcgttcc ggatgtcgaa gcacctgtaa aaccacgttt gccaaaagaa gcagtttatt
     3481 ttgaagagac gtaccaaaca gatgtcatgc ctttactaga agcatatgac caagagatta
     3541 ttccgttttc agagcgagaa ggctttgttt cttataccga acggttagcc aaattttatg
     3601 acagacctta ttatccaaat ttaacagaac aaataaaaga aagaggcttt ttaggcggga
     3661 aataactagc atcttcgcca ttattagtat atacttttaa ttgacaaaac ccagcaaaaa
     3721 cgctggaatg gaggtaattt tataatgaca gaagcattat ttttaaaccc tgtttttcaa
     3781 gaccgaattt ggggtggaac gaaattacat gattattttg gttacgatat cccgtctgat
     3841 actactggag aagactgggc gatttccgct catccgaacg gtccttcggt aatcaaaaac
     3901 ggcgaatata aaggcaaaac attagctgaa ttatggcaag aaaatcctgc actttttggt
     3961 aatccgaaag aagccgtttt cccactatta acgaaaattc tggatgcgaa tacggacctt
     4021 tctgtacaag ttcatccaaa tgacgaatat gcgaaagtgc atgaaaacgg ggaacttggc
     4081 aaaacagaat gctggtatat tattgactgc gctcctggtg cggaattaat atatggacac
     4141 aaagcagcta gcaaagaaga attcgctact tgggcaaaaa acggcgaatg ggataaattg
     4201 cttcgtaaag tggcgattaa accaggtgaa ttttattatg ttccaagtgg tacaattcat
     4261 gcgttaggca cggggacgtt agtgcttgaa acacaacaaa gctctgatac tacttatcgt
     4321 gtatatgact atgaccgtaa agacgcagaa ggaaacttgc gcgaacttca tttggataaa
     4381 gctattgacg ttacgactgc accgcatgtg gatgcgaagt tagatattaa aacagaaaca
     4441 cgtggtgggt tgactgaaac tacttttgta tcgaatgatt tctttagcgt atacaaatgg
     4501 gaagtggacg gcgcggctga attcatggct aaagctcctt atacgttagt gagtgtttta
     4561 gacggagaag cggtacttac gattgatgga acaaaacaat cgattaaaaa aggcgatcat
     4621 tttgtattgc cgaatgatgt aaaatcttgg gaaattgatg gaaaaatgac ggcgattgtt
     4681 tcgaatccgc ctgtgaaata acaaataagc agaaatcatt gtataaaagc cattttgaaa
     4741 atggaatata caagatttct gcttctt
//
LOCUS       DASEAA010000190         4761 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.190, whole genome shotgun sequence.
ACCESSION   DASEAA010000190 DASEAA010000000
VERSION     DASEAA010000190.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4761)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4761)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4761
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.190"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            29..388
                     /locus_tag="U0342_002595"
     CDS             29..388
                     /locus_tag="U0342_002595"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466117.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423924.1"
                     /translation="MKKPSIIFIFCTLLFVTACSTSENQTQATEATGTIEQVETDAIL
                     INNFKEKKDKYNPEATIRFDIVDKYYDETGNKIKITDLNKNDDVKIILTNDFPIQETS
                     PAPIDPKYVQKIILLNK"
     gene            510..932
                     /locus_tag="U0342_002596"
     CDS             510..932
                     /locus_tag="U0342_002596"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466116.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2423925.1"
                     /translation="MNIKQAADMFGLTVDTLRYYERVGVIPPVHRNESGYRDYKTSDL
                     NWVYLVKNLRNAGLSVESLIEFATLAQLRETQNVEAAQKQVLVDQLKELDEKLAEMKK
                     VRELLVYKIDSYDSHIAQFKAGELNADNVEKLWKRDKF"
     gene            954..1805
                     /locus_tag="U0342_002597"
     CDS             954..1805
                     /locus_tag="U0342_002597"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466115.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2423926.1"
                     /translation="MKTVKLNNGVEVPILGFGTYQITDAAEAEQAVKDAIETGYRHID
                     TAQSYMNEEAVGRGIVASGVDRKELFITTKIWVENVSYKGVMSSFDRSLKRLGLDYID
                     LLLIHQPFNDVYGAWIAMEELQASGKIRAIGVSNFSPDRVIDLAAFNEVTPQVNQIEV
                     NPFQQQAANLAVLRKEGVAIEAWAPFAEGKNDIFNNPVLTKIGAKYGKSAAQVILRWL
                     VEQDIIVLAKSVKPERMAQNLAIFDFELTEADKGEIASLDQGESQFFSHADPEMVKWM
                     ASRKLNV"
     gene            complement(1846..3372)
                     /locus_tag="U0342_002598"
     CDS             complement(1846..3372)
                     /locus_tag="U0342_002598"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466114.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2423927.1"
                     /translation="MDRKFIKPGIILLIVAFLVVSINVGAETGGSRTAQVNLTTSQQA
                     FIDEILPAAQDGYRDGKLLTSVTLAQAILESNWGESGLSQNSNNLFGIKGTYKGESVS
                     MGTMEASGSTTANFRVYPSWKESIEDHTALITENARYQDAVGETNYRKALQAIKDGGY
                     ATDPDYVSKLVAIIERYNLDKYDIIYDKIESNQSLAAIGTVAENKEQEVIWSAPYNTE
                     NANKIGTLENYLGRNLEISWEAKTEKGLWYFIRENNKDIGWINSNALKISYHQKEDEN
                     VHLTKYVDDLSAHVYRLPSPEKQFDNGTIAKYDRKALEVDKKITRGGYAWFRISEGEK
                     VIGWVRADKLNDRLYDRITEQTSYDGYALVSKSATDNVWTAPFNTKNAEKLAPFADYD
                     NEKLELVTRAKAGNTLWYQFKVDGKLVGWASEKDLNVFYTPAKEEPVKQVAYVKDPTA
                     KLYNKPVESTSTNPKAVGFYYGKLLAVDKTATILGEDWLHLKDRQNSLGWIKAIDINS
                     "
     gene            3641..4669
                     /locus_tag="U0342_002599"
     CDS             3641..4669
                     /locus_tag="U0342_002599"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466113.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Mrp/NBP35 family ATP-binding protein"
                     /protein_id="HEM2423928.1"
                     /translation="MLNEQQITRLLYRLQDPVLEASLEETEGVLEVQVLEETANIKIA
                     LADPAVETDHFVHNIEELLTQFGVNEINIELEYLPAAVIDRIFQARDNILSEASETKF
                     LAIASGKGGVGKSTVSANLAIALAQQGKKVGLLDADIYGFSIPVLLGTTESPRKENGQ
                     IIPVETHGIQMISMDFFVEQGEPVIWRGPMLGKMIKMFLEEVRWGKLDYLLIDLPPGT
                     GDVALDIHTLIPKCNELIVTTPHYAAASVASRAGYMAAKNNHKIIGVIENMSYLTLAD
                     GQVLKVFGQGGGEKVAADLETQLLIQLPIEQPEPNGNGYVSALFNSSSTSGKAYKTLA
                     EKIIPYLS"
BASE COUNT         1564 a          881 c          929 g         1387 t
ORIGIN      
        1 caagagagat aaaaaggagc cccacaccat gaaaaaaccc tcaatcattt ttattttttg
       61 cacattactc tttgtaacag catgctcaac ctccgaaaac caaacacaag ccaccgaagc
      121 aaccggcaca atagaacaag ttgaaacgga tgcaattcta attaataatt tcaaagaaaa
      181 aaaggataag tataatccgg aagccacaat acgctttgac atcgtagata aatattacga
      241 cgaaacggga aataaaataa aaataaccga cttaaacaaa aacgatgacg taaaaattat
      301 tttaaccaac gatttcccaa tccaagaaac ctcgccagcc ccaatagacc caaaatacgt
      361 acaaaaaatc atcctgctaa acaaataaaa ctctctcgtc cgcagagagt tttttctttt
      421 ctcaaaaaaa taaactcaaa ttccttgcct tggtgtgaac tccagggttt ataattctat
      481 atgtaaagaa cgaaacgagg tgatggagga tgaatatcaa acaagcggct gatatgtttg
      541 gtttaacagt agatacgttg cgttattatg agcgggtcgg tgttattccg ccagtccatc
      601 gtaacgaaag tggttaccgg gactataaaa cgagtgactt gaactgggtt tatctcgtga
      661 agaatttacg gaatgcggga ttatcggtag aatcgttaat tgagtttgcg acacttgcgc
      721 agctcagaga gacgcaaaat gtcgaagcgg cgcaaaaaca agtactggtt gaccaactaa
      781 aagaattaga cgaaaaatta gccgagatga agaaggtcag agaactactc gtgtacaaaa
      841 tcgattcgta cgatagtcac attgcgcagt ttaaagctgg cgaattaaat gcagataatg
      901 tagaaaaatt atggaaacgg gacaaatttt aaagataaga ggaggatttt caaatgaaaa
      961 cagtgaaatt aaacaatggt gtagaagtac ctattttagg atttgggaca tatcaaatta
     1021 cagatgctgc tgaagcggaa caagcagtaa aagatgcgat tgaaacgggc tatcgtcaca
     1081 ttgatacggc gcaaagttat atgaatgaag aagctgtagg tcgcggaatt gtggcatccg
     1141 gcgtcgatcg caaagaacta ttcattacga caaaaatatg ggtggaaaat gtaagttata
     1201 aaggtgttat gagctcattt gaccggtcgt taaaacgttt agggttggat tacattgatt
     1261 tgctgctaat tcatcaacct ttcaacgatg tatacggggc atggatagcg atggaggaat
     1321 tacaagcatc aggaaaaatt agagcaattg gcgtatcgaa ttttagcccg gatcgcgtaa
     1381 ttgacctagc tgcgttcaat gaagtaactc cgcaagtcaa ccaaattgaa gttaatcctt
     1441 tccaacaaca ggcagcgaat ctagctgttt taagaaaaga aggggttgca atagaagcat
     1501 gggcaccgtt tgcggaaggg aaaaatgata tttttaataa cccagtttta acgaaaattg
     1561 gtgcgaaata tggaaaatcg gccgctcaag taattttgcg ttggctagta gagcaagata
     1621 ttatcgtctt agctaaatct gtaaaaccag aaagaatggc gcaaaatctg gctatatttg
     1681 attttgaatt gacggaggca gataagggag aaattgccag cctagatcaa ggggaaagcc
     1741 agttcttctc acatgcggat ccagaaatgg tgaaatggat ggctagtcgc aaactgaatg
     1801 tataaacgaa aaaaggttct gcgtaaatgc agaccctttt tttatttaac tattgatgtc
     1861 gatagcttta atccatccta gtgaattttg tctgtcttta agatgcaacc aatcttcacc
     1921 aagaatggtt gctgttttat ccactgctaa taattttcca taatagaagc ccactgcttt
     1981 tgggttagta cttgttgatt ctacaggttt gttataaagt tttgctgttg ggtctttcac
     2041 gtaagcgact tgttttactg gttcttcttt agcgggagta taaaatacat ttaagtcttt
     2101 ttcgctagcc catccaacaa gttttccatc tactttaaac tgataccaaa gtgtatttcc
     2161 ggctttagct cgagtcacta gttctagttt ttcgttatca taatctgcaa atggtgctaa
     2221 tttttctgcg ttttttgtgt tgaatggtgc agtccatacg ttatcagttg cagatttact
     2281 tactagagca tagccatcgt aagaagtttg ttctgtgatg cgatcataaa ggcgatcatt
     2341 caacttatcc gcgcgaaccc agccaattac tttctcgcct tctgaaattc ggaaccaagc
     2401 atagccgccg cgagtgattt ttttatctac ttcaagggct tttctatcgt attttgcgat
     2461 agttccatta tcgaattgtt tttcagggct tggtagacga tatacatgtg cgcttaaatc
     2521 atctacatat ttggttaaat gaacattttc atcttctttt tgatgatagc tgatttttaa
     2581 ggcattacta tttatccaac caatatcttt gttgttctcg cgaataaagt accatagacc
     2641 tttttctgtt ttagcttccc aggaaatttc taagttacgc cctaagtaat tttcgagggt
     2701 cccgatttta ttagcatttt ctgtattgta cggtgccgac caaataacct cttgttcttt
     2761 attttcagct actgttccaa ttgctgctaa ggattgatta gattcgattt tatcgtaaat
     2821 gatatcgtat ttatctaagt tgtaacgttc aataattgct actagtttag aaacgtaatc
     2881 tggatcagtc gcataaccac cgtctttaat agcttgcagt gctttgcggt agttcgtttc
     2941 accgacagcg tcttgatagc gcgcattttc agtaatcaaa gctgtgtggt cttcaatgga
     3001 ttctttccaa ctaggataaa cgcggaaatt agcggttgtt gagccggatg cttccattgt
     3061 ccccatggag acagactcac ctttatacgt tcctttaatt ccgaataagt tattagagtt
     3121 ctggcttaga ccactttcac cccaatttga ttctaaaatt gcttgagcga gcgttacact
     3181 tgtaagcaat ttaccatcgc gatatccatc ctgagccgct ggtaaaattt catcaatgaa
     3241 agcttgttgt gaagtagtca gattaacttg agctgttctg ctacctcctg tttctgctcc
     3301 aacatttatg gaaactacca aaaatgccac aattagcaga attatccctg gttttataaa
     3361 ctttctatcc aaatttcaat gcactccttt ttatatatct gcaactatat tatcaaaaaa
     3421 tgccaaaaaa tttctattac atttctatga cgaaaaacaa taactacgcc aaacctattg
     3481 ggacgtaagg actaaagctg gaaatgttaa atatgtaaaa tttgtgaaat tttcttcaac
     3541 aaacttttgt accgaaaaga caagcaatat gtgaaataat aaaacggtca tgctataata
     3601 atcagtatgt cagcgcattc atttttggag gtttttatat atgttaaacg aacaacaaat
     3661 tactagattg ctatatagat tgcaagatcc tgttttagag gcaagcttag aagaaacaga
     3721 aggtgtttta gaagtgcaag tgcttgaaga aacagcaaac atcaaaatcg cattagctga
     3781 tccagcagta gaaacggatc attttgttca taatatagaa gaacttctca cccaattcgg
     3841 cgtaaatgaa ataaatattg agctagaata cctacccgca gcagttattg accgcatttt
     3901 ccaagcaaga gataacatac tctcagaagc tagtgaaacg aaattcttag caatagcgag
     3961 tggtaaaggt ggcgtcggga aatcaactgt ctctgcgaat cttgcaatcg ccttagcaca
     4021 acaaggcaaa aaagtaggat tattagacgc ggatatatat ggattcagta ttcctgtact
     4081 gctaggaaca accgaatccc cccgcaaaga aaatggtcaa atcatcccag tcgaaacaca
     4141 cggcattcaa atgatttcta tggatttttt tgtggaacaa ggagaaccag ttatctggcg
     4201 cggaccaatg ctagggaaaa tgattaaaat gtttttagaa gaagtaagat ggggaaaact
     4261 agactattta cttatcgatt taccacctgg aactggagat gttgcgctag atatccatac
     4321 gcttatcccg aaatgcaatg aacttattgt tacaacacca cattatgcag ccgcgtcagt
     4381 cgcatctcga gcaggatata tggcagcaaa aaacaatcac aaaatcatcg gtgtaatcga
     4441 aaatatgtct tatcttactt tagctgatgg acaagtatta aaagtattcg gacaaggcgg
     4501 cggcgaaaaa gttgctgcag acttagaaac acaactttta attcaactgc caatagaaca
     4561 accagaacca aatggaaatg gctatgtatc agcccttttc aactcttcaa gcacttcagg
     4621 aaaagcatat aaaaccctag cagagaaaat aattccatat ttatcataaa aactttgtaa
     4681 aaagtattga cgaaaggcaa aaatcttggt atatttataa acgttgctga tgcggacaaa
     4741 acgctttcgc aacaaaagaa a
//
LOCUS       DASEAA010000191         4748 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.191, whole genome shotgun sequence.
ACCESSION   DASEAA010000191 DASEAA010000000
VERSION     DASEAA010000191.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4748
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.191"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(160..918)
                     /locus_tag="U0342_002600"
     CDS             complement(160..918)
                     /locus_tag="U0342_002600"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465889.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2423929.1"
                     /translation="MLSIERKRAIVQYVKSRKIATVSELAKHFEVHEATIRRDLTSLE
                     KDKKLKRTHGGVMIEEKVVSEPNWKKRSEVRYEEKQRIATLAATMVKDGDTIILDAGT
                     TTGHIATALKDRSKLTVITNDINVASIMRFSPSKVIVTGGVIYPETFILNGMITSGTL
                     QSIHVHKAFVTTPALDIDKGLMHYDEYLIPAKQQMLHSADEVILVTDHTKFGRISLYK
                     YAALDEISSIITGKEIDPVLKEQFEEKGMQIYTT"
     gene            complement(1023..2375)
                     /locus_tag="U0342_002601"
     CDS             complement(1023..2375)
                     /locus_tag="U0342_002601"
                     /EC_number="5.3.1.9"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465890.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucose-6-phosphate isomerase"
                     /protein_id="HEM2423930.1"
                     /translation="MTHIKFDYSKALRFFEERELDYLEPAVKAAHDSLHNGTGAGNDA
                     LGWINLPTDYDKEEFARIKKATEKIHSDSDVLIVIGIGGSYLGARAAIETLNHSFYNV
                     LEKGARKTPQVFFAGNSISSSYLHDLIEVVGDRDFSVNVISKSGTTTEPAIAFRVFKE
                     LLIKKYGEEGAKKRIYATTDKAKGALKTLADNEGYETFVVPDDVGGRFSVLTAVGLLP
                     IAVSGVDIDALMNGAAAASKDFDKPELKNNIAYQYAAARNVLYRKGKVTELLISYEPG
                     LQYFNEWWKQLFGESEGKDKKGIYPSSANFSTDLHSIGQYIQDGRRNLFETVIKVDKP
                     RHNLTINKEDVDLDGLNYLAGETVDFVNTKAFEGTLLAHTDGEVPNFVVEVPELDAYT
                     FGYLVYFFEKAVAISGYLNGVNPFDQPGVEAYKANMFALLGKPGFEDKKAELEKRLND
                     "
     gene            complement(2477..2884)
                     /locus_tag="U0342_002602"
     CDS             complement(2477..2884)
                     /locus_tag="U0342_002602"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465891.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NUDIX hydrolase"
                     /protein_id="HEM2423931.1"
                     /translation="MKRSIHVQAFVYNEKKDEILVVRDRNLTWAFPGGHVETNQTMEE
                     ALASKVKEQTNIDIEIESILHCKERRATWEHVCTFVFRAKPVGNALLASNDDNVFRVK
                     WIPIPLADDLLAVDQLSLNELVRSEGVLYENYT"
     gene            complement(3032..3385)
                     /gene="yugI"
                     /locus_tag="U0342_002603"
     CDS             complement(3032..3385)
                     /gene="yugI"
                     /locus_tag="U0342_002603"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465892.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="general stress protein 13"
                     /protein_id="HEM2423932.1"
                     /translation="MSTFKVGDVVSGKVAGIQSYGAFVALDNSTQGLVHISEITHGFV
                     KDIHDFLEVGQEVKVKILDIDEEKNKISLSIRATEEAPKEQPTKKKQVSSSENDEGFN
                     TLRDKLEEWIKKADK"
     gene            3539..4705
                     /locus_tag="U0342_002604"
     CDS             3539..4705
                     /locus_tag="U0342_002604"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465893.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyridoxal phosphate-dependent aminotransferase"
                     /protein_id="HEM2423933.1"
                     /translation="MSQFDEVIPRIGTNSEKWDGAEELFGRKNIIPMWVADMDFRAPQ
                     PVLDAFQRQIDHGIFGYSTKSAALVEAIIDWNKEQHQFEIDPSALFFNGAVVPTISLA
                     IRSLTNEGDAVLMVSPIYPPFFNVTKATERKVVMSPLIYENRQYRMDFNDLEKRMKEE
                     KVKLFLLCNPQNPGGRCFTKEELVELAKLCEKYQIPIVSDEIHADLVMKNHKHVPMMV
                     AAPFYQDQIITLMAATKTFNLAAIKASYYIITNKDYQAKFAAEQKYATTNGLNVFGIV
                     GTEAAYRHGVPWLKELKEYIYSNYEYVKAALEKEVPEVGVTDLEATYLMWLDCRALPK
                     DEKTIYADLIEAGVGVQMGSGFGHSGKGFVRFNIACPKETLEKAVKLLIQGLKK"
BASE COUNT         1301 a          880 c          949 g         1618 t
ORIGIN      
        1 tttcttttgt tgcgaaagcg ttttgtccgc atcagcaacg tttataaata taccaagatt
       61 tttgcctttc gtcaatactt tttacaaagt tttttaaata aagatgaaaa aagatgaatt
      121 tggtgcataa attggtgatt aaatggagtt tttaaaacat tatgttgtat aaatttgcat
      181 tcctttttct tcaaattgtt cttttaatac tgggtctatt tcttttccag tgataataga
      241 agagatttcg tctagggctg cgtatttgta aagtgaaatg cggccaaact tggtgtggtc
      301 tgttactaag atgacttcat cggctgagtg gagcatttgt tgcttagctg ggattaggta
      361 ttcgtcgtag tgcattaagc ctttgtcgat atcgagtgcc ggtgtggtta caaatgcttt
      421 atgtacgtga atgctctgca aggttccgct cgtaatcata ccgttaagga tgaaagtttc
      481 tgggtagatg acgccacctg tcacaattac tttagacggg gaaaagcgca taatggaagc
      541 tacgttgata tcgtttgtta tgacggttag tttggatcgg tcttttaatg cggttgcgat
      601 gtgtccggtt gttgttccgg cgtcaagaat gattgtatcg ccgtctttga ccattgtcgc
      661 tgctaacgtg gcgatgcgtt gtttttcttc atagcgcact tcgcttcgtt ttttccaatt
      721 tggttcggaa actacttttt cttctatcat aactccgccg tgggttcttt ttagcttttt
      781 gtctttttct aaagaggtta aatcgcggcg aatggttgct tcgtggactt caaaatgttt
      841 agctaattcg ctaacagttg ctatttttcg gcttttgaca tattggacga tggcgcgttt
      901 tcgttcgata gatagcactt cttcccctcc ttttgtttaa ctatatggta actccaatgg
      961 aagaaaatcg caaacaaaca aaaaaccttg gagcaattgg ccccaaggtt tggaagtgaa
     1021 aattaatcgt ttaagcgttt ttctaattct gcttttttgt cttcgaagcc tggtttgcca
     1081 agtaatgcga acatgttggc tttgtatgct tctacgcctg gttggtcaaa tggatttacg
     1141 ccatttaggt aaccgctgat agctactgct ttttcaaaga agtatactag gtaaccgaaa
     1201 gtgtatgcat ctagttctgg aacttctaca acaaagtttg gaacttcgcc gtctgtatgt
     1261 gctagaagag ttccttcgaa tgcttttgta ttaacgaaat caactgtttc gcctgcaaga
     1321 taatttaagc catctaaatc tacgtcttct ttattgatag ttaagttgtg gcgtggttta
     1381 tccactttga taactgtttc aaaaaggttg cgacgtccgt cttggatata ttggccgata
     1441 gagtgcaagt cagtggagaa gttcgcgctg gatgggtaaa tacctttttt gtctttacct
     1501 tcactttcgc cgaataattg tttccaccac tcgttaaagt attgcaagcc tggctcatag
     1561 ctgattagaa gttctgttac tttgccttta cgataaagaa cattacgagc tgctgcgtat
     1621 tggtatgcaa tgttattttt tagttcaggt ttgtcgaaat ctttgcttgc tgctgctgct
     1681 ccgttcataa gagcatcgat atcaacgcca ctaactgcga ttggaagtaa acctactgca
     1741 gttaaaacag agaaacgtcc gccaacgtca tctggaacaa caaatgtttc gtagccttca
     1801 ttgtcagcta atgtttttag agcgcctttt gctttatcag ttgtagcgta aatgcgtttt
     1861 ttcgcgcctt cttcgccata ttttttgatt aaaagttctt tgaaaacacg gaaagcgatt
     1921 gctggctctg ttgttgttcc ggatttagaa ataacgttaa cagagaagtc acggtcgcca
     1981 actacttcaa ttaagtcatg taagtaagag gaactaatgc tatttcctgc aaagaatact
     2041 tgaggtgttt tacgagcacc tttttcaagt acattataga aggaatgatt taaagtttcg
     2101 attgcagcac gtgccccaag ataagaacca ccgataccga taacgattaa tacgtcggag
     2161 tcgctgtgga ttttttctgt tgcttttttg atacgagcaa attcttcttt gtcgtaatct
     2221 gttggtaagt taatccaacc aagtgcatca ttaccagcac ctgtaccatt atgtaatgaa
     2281 tcatgagctg cttttactgc tggttcaaga taatcaagtt cgcgttcttc aaaaaaacgg
     2341 agcgctttgg aataatcaaa tttaatatgt gtcattgttt tccctccaaa ttttaaaaaa
     2401 gtttctttat taactttata tcaatcagtg ctttttagca aggcttgacc ttgtgaaatt
     2461 tgagcctttt tgaaatttag gtatagtttt catacaagac gccttcgctt cttactagtt
     2521 catttaatga taattggtct acagctaata aatcatctgc gagcgggata ggtatccact
     2581 tcactcgaaa cacattgtca tcattggaag caagaagtgc attaccaaca ggttttgctc
     2641 gaaaaacgaa tgtacaaaca tgctcccatg tagcacggcg ctctttgcag tgtaggatag
     2701 actctatttc tatatcgata tttgtctgct ctttcacttt gcttgcaagt gcttcttcca
     2761 ttgtttggtt tgtttccaca tgtccccctg gaaatgccca tgtcaaattg cgatctctca
     2821 ccactagtat ctcgtctttc ttttcgttat atacaaatgc ctgcacatga atagatcttt
     2881 tcacgtaaat cccccttttg actattttat aatattgaat aaatagaaaa ttactactaa
     2941 ctattccctt tttctaaaat tttagtcaat taaatttacc agcttagcaa tttatcccaa
     3001 aatgggtata ttaccaagct gattgggact tttatttgtc tgctttttta atccattctt
     3061 ctagtttatc gcgtaaagtg ttaaaacctt cgtcgttttc gctagatgaa acttgtttct
     3121 ttttagttgg ttgttctttt ggtgcttcct ctgtcgctct aatagaaaga ctgattttat
     3181 ttttttcttc gtcaatatcc agaattttga ctttgacttc ttggccaact tctaaaaaat
     3241 catggatatc tttgacaaaa ccatgcgtaa tttctgaaat atgaactaag ccttgtgtcg
     3301 aattatctag cgctacaaat gctccgtagc tttgaattcc tgcgactttc ccagaaacta
     3361 catctcctac tttgaatgta ctcatcctca ttccacctac tttcaacctt acaatatttt
     3421 ataaattata acacttaggc gaaactttaa caattattct aaatccttct ccggtgagct
     3481 tttagggtgg aatttatgct ataattgagg cgaatgaaag agaaggagcg tgacatattt
     3541 gagtcaattt gatgaagtca ttccgcgtat tggaactaat tcagagaagt gggatggggc
     3601 agaagaatta tttggcagaa aaaatattat tccgatgtgg gtagcggata tggatttccg
     3661 tgcgccgcag cctgtacttg atgcatttca gcgtcaaatc gatcatggga tttttggtta
     3721 ttcgaccaag tcagcggcac ttgtcgaagc tattatcgat tggaacaaag agcagcatca
     3781 gtttgaaatc gatccgagcg cgttattttt taatggagcg gttgttccga caatttcgtt
     3841 agcgattcgc tctctcacaa atgaaggcga tgcagttcta atggtttcgc cgatttaccc
     3901 accatttttc aatgtaacga aagccactga gagaaaagtg gttatgtcgc cacttatata
     3961 tgagaaccgt caatatcgaa tggattttaa tgatttggaa aaacggatga aagaagaaaa
     4021 ggtaaaatta ttccttctat gtaatccgca aaatcctggt ggtcgttgtt ttaccaagga
     4081 agaacttgtg gaattagcga aactatgtga gaaataccaa attccgattg tttcggatga
     4141 aattcatgct gacttagtga tgaaaaatca taaacatgtg ccaatgatgg tcgcagcacc
     4201 gttttatcaa gatcaaatta ttactttaat ggcggctacg aaaacattta acttggcggc
     4261 gattaaagct tcctactata ttattacgaa taaagattat caggccaaat tcgctgcgga
     4321 gcaaaagtac gccacaacta atgggctcaa tgtctttggg attgttggta cagaagcagc
     4381 gtatcgccac ggcgtgcctt ggctaaaaga gttgaaagaa tatatttata gcaactatga
     4441 atatgtcaaa gcagcactcg aaaaagaagt acccgaagtt ggtgtgaccg acttagaagc
     4501 aacctacttg atgtggcttg attgtcgcgc tcttccaaaa gacgaaaaaa cgatttatgc
     4561 tgatttaatc gaagctggtg ttggtgttca aatgggttct ggatttggac attccgggaa
     4621 aggctttgtc cgttttaaca tcgcctgtcc aaaagaaact ttagaaaaag ctgtgaaact
     4681 tctgattcaa ggcttaaaaa aatagcttat tttgagaaac taagtagcaa acacttagtt
     4741 tctttctt
//
LOCUS       DASEAA010000192         4744 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.192, whole genome shotgun sequence.
ACCESSION   DASEAA010000192 DASEAA010000000
VERSION     DASEAA010000192.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4744)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4744)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4744
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.192"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(246..2051)
                     /gene="pepF"
                     /locus_tag="U0342_002605"
     CDS             complement(246..2051)
                     /gene="pepF"
                     /locus_tag="U0342_002605"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465712.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oligoendopeptidase F"
                     /protein_id="HEM2423934.1"
                     /translation="MSKTNALPLREEVPENLTWDLTTIYPNDEAWEQAFTDLQKITEE
                     SEQFKGRLSESSQTLYEALQFRDNAYDLISNLYVYAHLKMDQDTANAKYQGLHSRAGS
                     LVTKLMSALSYYDPEILAMDESVLKQFLNENKDLQLYAHLLEELNLSRPYILSEKEEA
                     LLANAGEVLGSSSNTFNTLNNADMKFPTIKDENGEDIEITHGRFGKLLESNDPRVRRE
                     AFLGVYSVYEGLKNTLASTLNGQVKKSNFYASTRGYTSAREAALSGNHIPETVYDSLL
                     KSVNANADLLHRYVKLRKELLGLEELHMYDLYTPLSDDVNLEFTYEEAKELVLEALKP
                     LGDEYQAILKEAFDSRWIDVMENKGKRSGAYSSGSYSTSPYILLNWQDNINNVYTLAH
                     ELGHSVHSYYTRKNQPFVYGDYSIFLAEVASTTNENLLTDYLLKKYDDPKVRAYLLNH
                     YLDGFKGTVFRQTQFAEFEHAIHQADQEGVALTADYLTETYFDINKKYYGEAMVYDAE
                     IGYEWSRIPHFYMNYYVFQYATGFSAASALSAKILTEGQEAVTAYIDFLKAGSSDYPI
                     DVLKKAGVDMATPNPVDDALKVFEQRLDELEKLVK"
     gene            complement(2124..3239)
                     /locus_tag="U0342_002606"
     CDS             complement(2124..3239)
                     /locus_tag="U0342_002606"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein CoiA"
                     /protein_id="HEM2423935.1"
                     /translation="MIIIFTARNNMGETFTITKMNVERIKQEERLFCKSCASPVMIKA
                     GQIKIPHFAHEKTMKCAFASEGESEEHLAAKKQIMAWYCYQSIPVEVESYFPEIKRQA
                     DIFVNGKAVIEFQRSSISISEMIQRTMDYLSIGLEVHWILGQVVRKEKGRICLSAFQQ
                     AFIQSDKKLGYHFWHYSTEREICTLYYHLTFEKGNRFFASEMKFSMKAPFSEWKKKLA
                     RIITRHAYVKRDRELERQKICFYYAKFKKHGQFMQKLFNAGYYLHYLPKEIGVDLEEQ
                     FLVITPAVEWQFDLWEKFFKGLEKGDTFSECCFFESFQSVVTQILTIWLSPNESLKLG
                     KSYLSYLIGEGVLSTIPDNRYRVKRKMVFTNTRAAHI"
     gene            complement(3365..4018)
                     /gene="mecA"
                     /locus_tag="U0342_002607"
     CDS             complement(3365..4018)
                     /gene="mecA"
                     /locus_tag="U0342_002607"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465714.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adaptor protein MecA"
                     /protein_id="HEM2423936.1"
                     /translation="MEIERINEDTIKFYISYLDLEERGFNQEDVWYDREKSEELFWDM
                     MDELKYEEEFSPEGPLWIQVQALKHGLEVFVTKATIGGKGEDGFDVTLSSPDELAEEK
                     IEKLLEENFNPVKKEALGDDDTLEFILEFRDFEDAISLSRATGLENLVTKLYSYQGKY
                     YLNVEFPENKYDESNIDNAVSILLEYGLESNLTGYMLAEYGKVIFDVPALKQIRKHF"
     gene            complement(4251..4646)
                     /gene="spxA"
                     /locus_tag="U0342_002608"
     CDS             complement(4251..4646)
                     /gene="spxA"
                     /locus_tag="U0342_002608"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465715.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator Spx"
                     /protein_id="HEM2423937.1"
                     /translation="MVTLYTSPSCTSCRKARAWLEEHDIPYKERNIFSEPLSLDEIKE
                     ILRMTEDGTDEIISTRSKTFQKLNVDLDSLPLQQLFELIQKNPGLLRRPIIIDEKRLQ
                     VGYNEDEIRRFLPRRVRTYQLREAQKMVN"
BASE COUNT         1488 a          983 c          689 g         1584 t
ORIGIN      
        1 gcaaaatgcc acggcttctt acagcgcaat caaaaggaga aattcacaca atcaaataaa
       61 gggggtattt gtttgtgatt tatttcacgg ttataatata ccatataaac gcttataatt
      121 caatagttca catacctatt tttatttgtc tatcctatga atattggcat cactcaaaca
      181 tacgaaaaaa aagactcgca gccattatcg ctacgatgtc tttttttagc aaatttcaca
      241 atatattatt taactaattt ttctagttca tctaatcttt gttcaaatac ttttagtgca
      301 tcatccaccg gattaggagt tgccatatca actcctgctt ttttcaacac atcgatagga
      361 taatccgaac ttcccgcttt caagaaatca atataggcag tcaccgcttc ttggccttct
      421 gttaaaatct tcgcactcaa tgcagatgct gcagaaaaac cagttgcata ttggaacaca
      481 taataattca tataaaaatg cggaatacga gaccattcat aaccgatttc agcatcataa
      541 accatcgctt ctccgtaata tttcttgtta atatcaaaat atgtttcggt caagtaatcc
      601 gcagtcagcg ccactccttc ttgatccgct tgatgaatag catgttcaaa ttcagcaaat
      661 tgggtttgac ggaatacagt acccttgaat ccatccaaat agtgattcaa caagtaagca
      721 cgaacttttg gatcatcata tttcttaaga agataatcag ttagtaaatt ttcatttgtt
      781 gtcgaagcaa cctccgctaa gaaaatcgaa taatcaccat aaacaaatgg ttggtttttt
      841 cttgtataat aactatgcac actatgccct aattcatgcg caagtgtgta aacattatta
      901 atattatcct gccaattgag taaaatataa ggactcgtac tatacgaacc agaagaatag
      961 gctccactac gttttccttt attttccatc acatcaatcc aacgactatc aaatgcttct
     1021 tttaaaattg cttgatattc atcaccaagc ggtttaagcg cttcaagcac aagttctttc
     1081 gcttcttcat aagtaaactc caaattaaca tcatcagaaa gtggcgtata aagatcatac
     1141 atatgcaatt cctctaagcc aagtaattct ttacgtaact tcacataacg atgaagcaaa
     1201 tctgcattcg catttactga ttttaacaag gaatcatata ctgtttcagg aatatggttc
     1261 ccagaaagag ccgcttcacg agctgacgtg tagccacgag tggaagcata aaaattagac
     1321 ttcttcactt gtccattcaa agtagaggct aaggtgtttt ttaggccttc ataaacagaa
     1381 tacacaccaa gaaacgcttc acgacgaact cgcggatcat tactttccaa caatttcccg
     1441 aaacgaccat gagtaatttc gatatcttcc ccgttctcat ctttaatggt tggaaacttc
     1501 atatctgcat tattcaaggt attaaaagta ttagacgaac tgccaagcac ttcacctgcg
     1561 ttagctagta aagcctcctc tttctcactt aaaatatacg gtcggcttag atttaactct
     1621 tctagtaaat gcgcatataa ttgtaaatct ttgttctcat ttaaaaattg ttttaaaacg
     1681 ctttcgtcca tagctaaaat ttcaggatca taataagaca gtgcagacat tagctttgta
     1741 actaggcttc ctgcgcgact atgtaaacct tgatatttcg cattagctgt atcttggtcc
     1801 attttcaaat gcgcatatac atataagtta ctaattaaat catatgcatt atctcgaaat
     1861 tgaagtgctt catatagtgt ctggctgctt tccgataaac gccctttaaa ttgctcgctt
     1921 tcttctgtga ttttttgcaa atctgtaaat gcttgttccc aagcttcatc gtttggataa
     1981 atcgtagtta aatcccaagt tagattttct ggtacttctt ctcttaaagg taatgcattt
     2041 gttttactca atattaaaac ccccaaccat agtcattttg tttttattat gagccaaaat
     2101 aactaaaaaa gcaaaacaga tgattatata tgtgctgctc gagtgttagt aaaaaccatt
     2161 ttccgtttca cacgatatcg attatctggt atggtagata acaccccttc accaatcaaa
     2221 taagaaagat atgattttcc taacttcaaa ctttcatttg gagaaagcca gatagttaaa
     2281 atttgggtta caactgattg aaaactctca aaaaagcagc attcgctaaa agtatctcct
     2341 ttctccagac ctttaaaaaa cttttcccac aaatcaaatt gccattcaac agcaggtgtg
     2401 ataactaaaa attgttcttc taaatccaca cctatctctt tcggtaaata atgcaaataa
     2461 taaccggcat taaataattt ttgcataaat tgtccatgtt ttttaaattt agcataataa
     2521 aaacaaattt tttgtctttc gagttctcta tctcgtttta cataggcatg gcgtgtaata
     2581 attctagcta acttcttctt ccattcacta aaaggtgcct tcatagaaaa tttcatttca
     2641 cttgcgaaaa aacgatttcc tttttcaaat gttagatgat aataaagtgt acaaatctct
     2701 cgctcagtag aatagtgcca aaaatgataa cccaatttct tgtcagactg aataaaagct
     2761 tgttggaatg cagaaagaca aatacgcccc ttctccttcc taaccacttg cccgagtatc
     2821 cagtgaactt ctaatccaat tgataagtag tccattgttc gttgaatcat ttcactaatt
     2881 gaaatagaag aacgttgaaa ttcaattact gccttcccat tcacaaaaat atctgcttgt
     2941 cgttttattt ctggaaaata actttccact tccacaggaa tactttgata gcaataccag
     3001 gccatgattt gttttttagc tgctaaatgt tcctcgctct ccccttcaga agcaaatgca
     3061 cacttcattg tcttctcgtg ggcaaagtgc ggtattttta tctgtcctgc ttttatcatt
     3121 actgggcttg cacaagactt acaaaacagt ctttcttctt gcttgattcg ttccacattc
     3181 atcttagtaa tagtaaaagt ttctcccatg ttatttctgg ctgtaaaaat aattatcact
     3241 ctcctattag ctctttaata ttattattcg ccaaggagca tccaaattcc tttcttattt
     3301 ttaaaatcac aaaaaagccc cgtttggcta tttttcagca caaacggggc tttaaaatac
     3361 tattttagaa atgttttcta atttgcttta atgcaggaac gtcaaagatt acttttccgt
     3421 actcagctag catataacca gttaaattcg actctaaacc gtactcaagc aaaatactaa
     3481 cggcattgtc aatgttagat tcatcatatt tattctcagg aaattctaca ttcaaataat
     3541 actttccttg atacgagtat agcttagtta ctaaattttc tagtccagtc gctcgtgaaa
     3601 gagaaatagc atcttcaaaa tcacggaact ctaaaataaa ctctagtgta tcatcgtctc
     3661 caagtgcttc tttcttcact ggattaaagt tttcttcgag tagtttttcg attttttctt
     3721 ctgcaagctc atctggcgag ctaagcgtga catcgaagcc atcttcgcct tttccaccaa
     3781 ttgtagcttt tgttacgaat acttctaagc catgttttaa ggcttggact tgtatccaga
     3841 gcggaccttc cggagagaac tcttcttcat atttcagctc atccatcata tcccagaaaa
     3901 gctcttcact tttctcgcga tcataccaaa catcttcttg gttaaaacct cgctcttcca
     3961 aatccagata agagatataa aacttgattg tatcctcatt aattcgttca atttccatcg
     4021 tcacactctc ccttccttct tagtcattga caatgaaggg taaaacttaa ttggttaaat
     4081 tcattgtagc tcatattaag aaatagtacc accatttttc cttcgatttg cttggtggaa
     4141 tcttatctta gctgaaaagc gaaaaaaatt caagaacatt tacttaaact acaaaaaaaa
     4201 gcgccaagaa tccaattgaa tggaatcctt ggcaaccact tttatcaatc ttagttaacc
     4261 attttttgcg cttcacgtag ttgatacgta cgtacacggc gcggtaagaa acggcgaatt
     4321 tcatcttcat tgtacccaac ttgcaaacgt ttttcatcaa taatgatagg acgtcttaat
     4381 aagccaggat ttttctggat taattcaaat agttgttgca aaggaagact atctaaatcc
     4441 acgttcagtt tttggaacgt ttttgaacga gtggaaataa tttcatctgt accatcctca
     4501 gtcatacgaa gaatttcttt aatttcatcc aaactaagtg gctcagaaaa aatgtttctt
     4561 tccttataag ggatatcatg ttcttccaac catgcacgag cttttcggca agatgtgcaa
     4621 ctaggtgaag tgtataacgt taccattaga cattcacact ccttatcggg tattgtttca
     4681 ttcatataac gaaattctag caatatctct atttggaaaa ttcattaaag aacttacact
     4741 tcat
//
LOCUS       DASEAA010000193         4705 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.193, whole genome shotgun sequence.
ACCESSION   DASEAA010000193 DASEAA010000000
VERSION     DASEAA010000193.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4705)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4705)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4705
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.193"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..790)
                     /locus_tag="U0342_002609"
     CDS             complement(<1..790)
                     /locus_tag="U0342_002609"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466045.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="resuscitation-promoting factor"
                     /protein_id="HEM2423938.1"
                     /translation="MKKTVVAIAAGLIIAGSGSTQAFAAEYKVQDGDSLWKISNENNV
                     SIKQLKEDNNLSSDIIFPNQTLQVNSSEKKSTTNNNSEYTVVAGDTLGHIAVDKGVTV
                     NQLKSWNNLSSDLILVGQKLSIGNKASASESNASENNSTANNSANNKVTEQPKEEKAA
                     PTTQKSTSSNEASSNSSSAQGNVSKELTVTATAYSKAEPGMGHMTATGIDLNDNSRVI
                     AVDPSVIPLGSKVYVEGYGQAIAADTGGAIKGNKIDVHLNSVQEA"
     gene            complement(1181..1546)
                     /gene="ssb"
                     /locus_tag="U0342_002610"
     CDS             complement(1181..1546)
                     /gene="ssb"
                     /locus_tag="U0342_002610"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466046.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="single-stranded DNA-binding protein"
                     /protein_id="HEM2423939.1"
                     /translation="MINQVTLVGRLTKEPELKWTAEDRAVLNLTFALNRFGKNKRVDN
                     DADFIQCVIWGKRAEATAEFCAKGQLVGVVGELQSRNYLNKEEQKIYITEVLVHQIRY
                     LSSRNKDERVVNIPQEEDE"
     gene            complement(1797..2231)
                     /gene="fabZ"
                     /locus_tag="U0342_002611"
     CDS             complement(1797..2231)
                     /gene="fabZ"
                     /locus_tag="U0342_002611"
                     /EC_number="4.2.1.59"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466047.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="3-hydroxyacyl-ACP dehydratase FabZ"
                     /protein_id="HEM2423940.1"
                     /translation="MLDIKKIKEILPHRYPFLLVDRVISVEEGKKVTAIKNVTANEEF
                     FNGHFPEYPVMPGVLIVEALAQTSGIAMMQSEANKGKIGLFAGIDGCRFKRQVVPGDQ
                     LLLEAEITRMRGAIAKAKVKATVEGDLVCEAEIMFALSDLPK"
     gene            complement(2254..3249)
                     /gene="mreB"
                     /locus_tag="U0342_002612"
     CDS             complement(2254..3249)
                     /gene="mreB"
                     /locus_tag="U0342_002612"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein MreB"
                     /protein_id="HEM2423941.1"
                     /translation="MAKDVGIDLGTANVLIHVKGRGIVVNEPAVVAINNKTGQVLAVG
                     TEARDMVGRTPGDITAIKPMKDGVIADFDIVQEMLRFFIQKLNLKTFFSRPRILICCP
                     TNITSVEQKAIREVAEKSGGKQVFLEEEPKVAAIGAGMEIFEPSGNMIIDIGGGTADV
                     AVLSMGDIVTSQSVKVAGNKWDADILNYVKRKYNLLIGERTAENIKVTIGTACQGAKE
                     EKMEIRGRDLVSGLPKTISITSSEVEEAIHDSLHLMVLAAKQVLEQTPPELSADIIDR
                     GIIMTGGGSLLHGLDELMSEQLKVPVLITENPLDVVALGTGILLDSLTNKKRNRF"
     gene            complement(3412..4704)
                     /gene="murA"
                     /locus_tag="U0342_002613"
     CDS             complement(3412..4704)
                     /gene="murA"
                     /locus_tag="U0342_002613"
                     /EC_number="2.5.1.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="UDP-N-acetylglucosamine
                     1-carboxyvinyltransferase"
                     /protein_id="HEM2423942.1"
                     /translation="MEKIIVRGGKQLNGSVKMEGAKNAVLPVIAATLLASKGTSVLKN
                     VPNLSDVFTINEVLKYLNADVSFVNDEVTVNATGEITSDAPFEYVRKMRASIVVMGPL
                     LARTGSARVALPGGCAIGSRPVDLHLKGFEAMGAIVKIENGYIEATAEKLVGAKVYLD
                     FPSVGATQNIMMAATLAEGTTVIENVAREPEIVDLANFLNQMGARVIGAGTEVIRIEG
                     VKELTATEHSIIPDRIEAGTFMIAAAITGGNVLIEDAVPEHISSLIAKLEEMGVQIIE
                     EENGIRVIGPDKLKAVDVKTMPHPGFPTDMQSQMMVIQMLSEGTSIMTETVFENRFMH
                     VEEMRRMNADMKIEGHSVIISGPAKLQGAEVAATDLRAAAALILAGLVADGYTQVTEL
                     KYLDRGYNNFHGKLQALGADVERVDDSKIDVTNLASLF"
BASE COUNT         1408 a          978 c          690 g         1629 t
ORIGIN      
        1 tagcttcttg tactgagttt aaatgtacat caattttatt acctttaatt gcaccaccag
       61 tatcagctgc aattgcttgt ccgtatcctt caacataaac ttttgaacct aaaggaataa
      121 cagatggatc aactgcaatt actcttgaat tatcatttaa atcaatccct gtcgctgtca
      181 tgtggcccat gccaggttca gctttactat atgctgtcgc agttaccgtt aactcttttg
      241 aaacattacc ttgtgctgaa gaactgtttg aagatgcttc attagaagaa gttgattttt
      301 gagttgttgg agccgccttt tcttctttcg gttgttctgt tactttatta ttggctgaat
      361 tatttgctgt tgaattgttt tctgaagcat tactttcact tgctgaagct ttattaccaa
      421 tagataattt ttgacctact aatattaaat ctgaagaaag attattccac gatttaagtt
      481 gattaactgt tacaccttta tcaacagcga tatgtccaag tgtatctcct gcaacaactg
      541 tgtattcaga attgttatta gtagtggatt ttttctcact actatttact tgcaatgttt
      601 ggttcggaaa aataatgtca gaactcaaat tgttatcttc tttcaattgt tttatagaga
      661 cattattttc atttgatatt ttccatagtg aatcaccatc ttgcacttta tactcagctg
      721 caaaagcttg agttgaacca gatcctgcaa taattaaacc agccgcaatg gctactactg
      781 tcttcttcat gtaattattt tccctccttg ataactttcg aggataatcg taccatacga
      841 aactatcagc ttggttactg aaaaattaag catgtatgac acactttcaa atagtatccg
      901 ttttcctgca atatttgtaa attgccttta ttgtctgatt tctattgcta ctggttgtat
      961 tttctgtgaa aatcaatcta gcctaactcg ccgtggggat ttagtcaatt aataaaaggt
     1021 ttcctgattg ttcacttaat gaattaaatg tgcgaagtaa ctaaaattgg aaaatttttc
     1081 cattacaaat tgagctgata atttattgat tttgttgttt tttggggtgg gatttttaaa
     1141 attcattatg aaatatggct ctttataaca aagtattaca tcattcatcc tcttcttgag
     1201 gtatattaac tactctttca tctttatttc gacttgataa ataccgaatc tgatgaacta
     1261 aaacttccgt aatataaatt ttctgttctt ctttatttaa ataattccga gattgtagtt
     1321 cgccaactac tcctactaat tgtcctttag cacagaactc tgcagtggcc tctgctcttt
     1381 taccccaaat aacacattga ataaagtcag catcattatc aactctttta tttttaccaa
     1441 accgatttaa agcaaaggtt aaattcaaaa cagccctgtc ttccgcggtc catttcaatt
     1501 ctggttcctt agttaatctg cctactaaag ttacttgatt aatcatataa tcgcctcttt
     1561 cttttgatgt aaagcgattg tattagataa aaagtttatt gtaaaatagc taaaactgta
     1621 ttttcactag gtagaaacct tccaaaagat tatttcctct aaaagaaaaa catcatttta
     1681 tgtagttaat gacatccaaa gcatcatttt agtactttga aaaaattttt aaccaatgtt
     1741 attctgagaa catgaaaaaa gcactaaaac ccatttggac ctcagtgcta atctttttat
     1801 ttaggtaggt ctgataaggc aaacataatt tcagcttcac aaaccaaatc gccttctaca
     1861 gttgctttga cttttgcttt tgcaatcgcg cccctcatcc gagttatttc agcctcaagc
     1921 aagagttggt cccccggaac aacttgacgt ttaaatcggc aaccatcaat tccagcaaat
     1981 aaaccaattt tacctttatt tgcttcactc tgcatcattg caattccact agtttgcgct
     2041 agagcttcca ctattaaaac tcctggcatt acaggatact caggaaagtg cccgttaaaa
     2101 aattcttcat ttgctgttac attcttaata gcggtaactt ttttgccttc ttcaacagaa
     2161 ataactctat ctactaacaa aaatggataa cgatgaggca aaatctcttt gattttctta
     2221 atatctaaca tatacatccc ccaaaattca catttagaat ctattacgct ttttatttgt
     2281 aagtgagtca agtaaaatgc cggtaccaag tgccactaca tctaaaggat tctcagtaat
     2341 taaaactggg acctttagct gttcggacat taattcatct aaaccatgta ataaagatcc
     2401 accaccagtc atgatgattc ctctatcaat aatatccgct gaaagctctg gaggtgtttg
     2461 ttccaacact tgtttagcag ctaggaccat taggtgtaat gaatcgtgaa tcgcttcctc
     2521 cacttcagaa cttgtaatag aaattgtttt cggtaagcca ctcactaaat ctctaccacg
     2581 aatttccatt ttctcttctt tggctccttg acatgcagta ccgattgtta ctttaatatt
     2641 ttcagccgtt ctttcaccaa taagtaagtt atatttacgt ttaacataat ttaaaatatc
     2701 tgcgtcccat ttgtttccag cgacttttac tgattgacta gttacaatat cacccataga
     2761 caatacagca acatccgcag tacctccacc aatatcaata atcatattac cggaaggctc
     2821 aaaaatctcc atacccgctc caatagcagc aactttaggt tcttcttcta agaacacttg
     2881 ttttccacca cttttttcag caacttcgcg aattgctttt tgctcgacag aagttatatt
     2941 tgttggacaa caaattaaaa tacgtggccg tgaaaaaaaa gtttttaaat ttaacttttg
     3001 tatgaagaaa cgcaacattt cttgcacaat atcaaagtca gcaataaccc catctttcat
     3061 aggtttaatt gccgtaatgt ctcctggagt tctaccaacc atatctcttg cttcagtccc
     3121 aacggctaaa acttgtccag ttttattgtt aatagcgaca actgcaggtt cattaacgac
     3181 gattcctctt cctttaacat gaattaatac attggctgta cctaaatcga taccaacatc
     3241 ttttgccatt tacattttaa ctcctttcgt ggtgtacacc taattttaca tctcattctg
     3301 aattatagca taatttatgt gcggctgaaa tgtatatttt atagcaatgc ggaatttttc
     3361 atgacaaata aaaaaaccgc atcaagaaga tacggttttt aacatttaaa tttagaataa
     3421 agacgctaag tttgttacat cgattttgga atcatctaca cgttccacat cagcaccaag
     3481 cgcttgtagt ttgccgtgga aattattata gccacgatca aggtatttta actcagttac
     3541 ttgtgtatag ccatctgcaa ctaaaccagc aagaataagc gctgctgctg cacgtaaatc
     3601 tgtcgcagca acttctgctc cttgtaattt agctgggcca gaaataataa cagaatgtcc
     3661 ttcaattttc atatcagcgt tcattctacg catttcttct acatgcataa aacgattctc
     3721 aaaaacagtt tcagtcatga tgcttgttcc ttcactcagc atttgaataa ccatcatttg
     3781 cgattgcata tctgttggaa aacctgggtg tggcatcgtt ttaacatcca cagcttttaa
     3841 tttatcagga ccaattacac gaatcccatt ctcttcttca atgatttgaa cgcccatttc
     3901 ttcaagttta gcaattaacg aactaatatg ctcgggaact gcatcttcaa ttaaaacatt
     3961 tccaccagta atcgcagcag caatcataaa tgttcctgct tcaatacggt ctggaataat
     4021 agaatgttca gttgcagtta attctttaac tccttcaatt ctaattactt ctgttcctgc
     4081 accgataact ctagcaccca tttggttaag gaagtttgct aagtcgacaa tttcaggttc
     4141 acgagccacg ttttctatta ctgtagtacc ttctgctaga gtagcagcca tcataatatt
     4201 ttgtgtcgct ccaacacttg ggaaatctaa gtatacttta gcaccaacta atttttcagc
     4261 agttgcttca atatagccat tttcaatttt cacgattgcg cccattgctt caaaaccttt
     4321 taaatgtaag tcaactggtc ttgagccaat tgcacatcca ccaggtaaag ctacacgtgc
     4381 tgaaccagta cgtgccaaaa gtggtcccat tacaacaatg gaagcacgca ttttacgaac
     4441 gtactcaaaa ggtgcatcag aagtgatttc tcctgttgca ttgactgtta cttcatcatt
     4501 tacaaaagaa acatctgcat ttagatattt aagaacctca ttgattgtga atacatcaga
     4561 caagtttggg acatttttta atacgctagt acctttactc gcaagtaatg tagcagctat
     4621 taccggtaat acagcattct tggcaccttc cattttcaca gaaccattta actgttttcc
     4681 accgcgtaca ataatttttt ccaaa
//
LOCUS       DASEAA010000194         4693 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.194, whole genome shotgun sequence.
ACCESSION   DASEAA010000194 DASEAA010000000
VERSION     DASEAA010000194.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4693)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4693)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4693
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.194"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..352
                     /locus_tag="U0342_002614"
     CDS             <1..352
                     /locus_tag="U0342_002614"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="internalin"
                     /protein_id="HEM2423943.1"
                     /translation="FLSKLEVLDLHGNEITNTGGLTRLKKVNWIDLTGQKCVNEPVRY
                     QPELYITNTVKDPDGRWISPYYISNGGNYVDGCVLWELPVYTNEVSYKFSEYINVGET
                     EAIFDGTVIQPIQN"
     misc_feature    573..711
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00558"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="ribosomal protein L20 leader region; Derived by
                     automated computational analysis using gene prediction
                     method: cmsearch."
                     /db_xref="RFAM:RF00558"
     gene            794..1309
                     /gene="infC"
                     /locus_tag="U0342_002615"
     CDS             794..1309
                     /gene="infC"
                     /locus_tag="U0342_002615"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465310.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="translation initiation factor IF-3"
                     /protein_id="HEM2423944.1"
                     /translation="MSKDMLVNDGIRAREVRLIDQDGEQLGVKSKIDALQIAEKANLD
                     LVLVAPTAKPPVARIMDYGKFRFEQQKKDKEARKNQKVIVMKEVRLSPTIDEHDFDTK
                     LRNARKFLEKGDKVKCSIRFKGRAITHKEIGQKVLDRFAKACEDLCTIEQRPKMDGRS
                     MFLVLAPLHEK"
     gene            1331..1531
                     /gene="rpmI"
                     /locus_tag="U0342_002616"
     CDS             1331..1531
                     /gene="rpmI"
                     /locus_tag="U0342_002616"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465309.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L35"
                     /protein_id="HEM2423945.1"
                     /translation="MPKMKTHRGSAKRFKRTGSGKLKRRHGFTSHMFANKSQKQKRKL
                     RKSAMVSAGDFKRIRQMVAKMK"
     gene            1571..1930
                     /gene="rplT"
                     /locus_tag="U0342_002617"
     CDS             1571..1930
                     /gene="rplT"
                     /locus_tag="U0342_002617"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465308.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L20"
                     /protein_id="HEM2423946.1"
                     /translation="MPRVKGGTVTRKRRKKIVKLAKGYYGSKHLLFKVANQAVMKSYQ
                     YAYRDRRQKKRDFRRLWIARINAAARMQDLSYSKLMHGLKLAGIDINRKMLADLAVND
                     IASFNTLADSAKKALAK"
     gene            complement(1971..2726)
                     /gene="xth"
                     /locus_tag="U0342_002618"
     CDS             complement(1971..2726)
                     /gene="xth"
                     /locus_tag="U0342_002618"
                     /EC_number="3.1.11.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465307.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="exodeoxyribonuclease III"
                     /protein_id="HEM2423947.1"
                     /translation="MKLISWNVNGLRAAVKKGFLEYFEEVDADIFCLQETKLQEGQIE
                     LDLPAYKDYWNYAVKKGYSGTAIFTKVEPLSVQYGLGVPEHDTEGRVITLEFEEFFMV
                     TVYTPNSQAELKRLDYRMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNPKTN
                     RKNAGFSDEERAKFSAFLDAGFIDSFRYFYPDLTDAYSWWSYRMNARARNTGWRIDYF
                     VVSERLKDKLVDAKIHADVLGSDHCPVELELNL"
     gene            2810..3340
                     /locus_tag="U0342_002619"
     CDS             2810..3340
                     /locus_tag="U0342_002619"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465306.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1697 domain-containing protein"
                     /protein_id="HEM2423948.1"
                     /translation="MGNYVVLLRAVNVAGKNKVNMKNLQAALQEVGFQNVITYIQSGN
                     LVLSSMLQTELEVATKITEVMKATFDLTIDVFVFSEQNYSQIIANNPFPPETIGEEER
                     WMAAFYNENIAIARQKNEQAEVIAIGRVLYIHIFSNQIHTLKLPVFLGEYKKTITTTR
                     NWRTTLQLQTLLDSQE"
     gene            3398..4630
                     /gene="pepT"
                     /locus_tag="U0342_002620"
     CDS             3398..4630
                     /gene="pepT"
                     /locus_tag="U0342_002620"
                     /EC_number="3.4.11.4"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidase T"
                     /protein_id="HEM2423949.1"
                     /translation="MKEELLKRFTKYVKVDTQSNEESKACPTTPGQMELANILVTELK
                     EIGMQEVTVDEFGYVMATLPSNTTKEVPVIGFLAHLDTATDLTGKNVQPQVHENYDGK
                     DIVLNKDLNVVLSPKQFPELADYKGKTLITTDGTTLLGADDKAGITEIMVAMNHLINH
                     PEIKHGKIRVAFTPDEEIGRGPERFDVEAFGAKYAYTMDGGPLGELEYESFNAAGAKI
                     TFNGNSVHPGTAKNKMVNAVKMAMEFNAHIPKDEAPEYTEGYEGFYHLISLNGDVEQA
                     KAYYIIRDFDHLKFVERKTHIASIAKELEEKYGEGSVELKLNDQYYNMREKIEPVKEI
                     VDIVSAAMRNLDIEPKISPIRGGTDGAQLSYKGLPTPNIFGGGENFHGKFEYVALESM
                     VKATEVIIEVARLFEEKE"
BASE COUNT         1671 a          888 c          890 g         1244 t
ORIGIN      
        1 ctttttatct aaactagagg tattagattt gcatggtaat gaaataacaa atacaggtgg
       61 actaactaga ttgaagaaag ttaactggat agatttaact ggtcagaaat gtgtgaatga
      121 accagtaaga taccaaccag aattgtatat aacaaatact gtcaaagacc cagatggaag
      181 atggatatct ccatattaca tcagtaatgg agggaattat gtagatggtt gtgtcctgtg
      241 ggaattgcct gtttatacaa atgaagtaag ctataagttt agcgaatata taaacgttgg
      301 ggagactgag gctatatttg atggaacagt tatacaacct attcagaatt aggacttatg
      361 catacatgtt tgatgttttg aatggatatg cacactgtat acttttagct ctcgtatagt
      421 cacgagagct ttttcaatat gaaagtttta actgcctttt gacagaaaga acgtttattc
      481 gtataagatt gcccagaggt aaagaaacta ttttatttac aattcacctt gacaccaaaa
      541 atcccatatg atatagtaag taaggttatt aaacaagaaa gaagaagcaa cccgcttctc
      601 gcctcgttaa cacgaacgtt ttcaggcaaa aaattcaaac tttcgtcgcg taacttacgc
      661 gattttgaat gtgcgggatt gctgaaaagc agcccgtttt tttatggcct ccgaacgaat
      721 gagttagcag gccgcagatt tgaacagcta ttttctatct tgttgtaaca aaattaagtg
      781 gaggtggctc accattagca aagacatgtt ggtaaacgat gggattcgtg cacgtgaagt
      841 aagattgatc gaccaagacg gtgaacaatt aggcgtgaag agtaaaatcg atgcgcttca
      901 aattgctgaa aaggctaatc ttgatctagt gcttgttgct ccaacagcga aaccgccagt
      961 agctcgtatc atggactacg gtaaattccg ttttgaacaa cagaagaaag ataaagaagc
     1021 ccgtaagaac caaaaagtca tcgtgatgaa agaagttcgt ttaagtccaa cgattgacga
     1081 acatgacttc gatacgaagc tacgtaatgc acgtaaattc cttgaaaaag gcgataaagt
     1141 aaaatgctct atccgtttta aaggtcgtgc cattacacac aaagaaatcg gtcagaaggt
     1201 gcttgaccgt tttgcaaaag cgtgcgaaga cctttgtaca attgagcaaa gaccaaaaat
     1261 ggacggacgt tccatgttct tagtcctagc accacttcat gaaaagtaaa gttttgagga
     1321 ggaaaaattc atgccaaaaa tgaaaaccca ccgcggttcc gctaaacgtt tcaagagaac
     1381 aggatctgga aaattaaaac gcagacacgg cttcactagc catatgttcg ctaacaaatc
     1441 ccaaaaacaa aaacgtaaat tgcgtaaatc tgcaatggta tcagctggcg acttcaaacg
     1501 tattcgtcaa atggtcgcta aaatgaaata agagaaacaa catttttgta aattctagga
     1561 ggtagacaat atgccacgcg taaaaggcgg aacagtaaca cgcaaacgtc gtaaaaagat
     1621 agttaaatta gccaaagggt attatggctc taaacattta ttattcaaag tagctaacca
     1681 agcggtaatg aaatcttacc aatatgctta tagagatcgt cgtcaaaaga aacgtgattt
     1741 ccgtagatta tggatcgcac gtatcaatgc ggcagctcgt atgcaagatc tttcttacag
     1801 caaattaatg cacggcttaa aattagctgg tattgatatt aaccgtaaaa tgcttgcaga
     1861 cttagcagtt aatgatatcg catcattcaa cacacttgct gattcagcaa aaaaagcatt
     1921 agctaaataa ttcaaaaatc ctcactcttt ggagtgagga tttttttagg ttataaatta
     1981 agttctagct cgacaggaca atgatccgaa ccaagcacat ccgcatgaat tttggcatcc
     2041 actaacttat ctttcaaacg ttccgataca acaaaataat caatccgcca accagtattc
     2101 ctagcacgcg cgttcattcg gtaagaccac caagaataag catcggtcaa atctgggtaa
     2161 aaataacgga aactatcaat aaatccagca tctaaaaatg cagaaaattt cgcgcgttcc
     2221 tcatccgaga agccagcatt tttacgattt gtcttcggat tttttaaatc aatttcttcg
     2281 tgcgcaacat tcaaatcgcc acaaagcaca accggcttcg ttttatccaa gttttttaca
     2341 tattccaaaa tcgcatcctc aaacgtcatc cggtaatcta atcgttttaa ttcagcttgc
     2401 gaattcggcg tataaaccgt caccataaaa aattcctcaa attcaagtgt gataacacga
     2461 ccttctgtat catgttcagg aacccctaaa ccatattgaa ctgataacgg ctccactttt
     2521 gtaaaaatcg cggtaccaga ataacctttt ttcaccgcat aattccagta atctttatat
     2581 gctggcaaat caagttcaat ttgaccttct tgtaatttag tttcctgcaa acaaaaaata
     2641 tccgcatcta cttcttcaaa atactccaaa aagccttttt ttacagctgc tcgaagcccg
     2701 tttacattcc aagaaattaa tttcacctaa aaaacctccc atcgctaata gccttattat
     2761 aacgtaagtc acatgctata atgtagttaa acgattggga gggagataga tggggaatta
     2821 tgtagtgtta ttaagagcag taaatgttgc tggaaagaat aaagtaaata tgaaaaatct
     2881 acaagctgct ttgcaagaag taggtttcca aaatgtcatt acttatatcc aaagcggcaa
     2941 cctcgttcta agctccatgt tacaaacgga actagaagta gcgacaaaaa taaccgaggt
     3001 aatgaaagca acgttcgatt taactattga tgtattcgta ttttcggaac aaaattatag
     3061 ccaaatcatc gcaaacaatc catttccacc agaaacaatt ggcgaggagg aacgctggat
     3121 ggccgctttc tataatgaaa atatcgctat tgcgagacaa aaaaacgagc aagccgaagt
     3181 aatcgcgatt ggtcgcgttc tttatatcca cattttctcc aaccaaatcc acaccttaaa
     3241 attaccagtt ttccttggcg aatataaaaa gacaataaca acaacgcgca attggcgaac
     3301 aaccctccaa ttacaaacac tactcgacag tcaggaatag aatttttcga aaatcaagtt
     3361 tataatgaaa aagaatcaat ttaagggagt ggtcggaatg aaagaagaac tattaaaacg
     3421 atttacgaaa tatgtaaaag tagatacaca gtcaaatgaa gaaagtaaag cttgtccaac
     3481 aacaccaggt caaatggaac tggcaaacat tctcgttaca gaactaaaag aaatcggtat
     3541 gcaagaagtt actgttgacg aatttggtta tgttatggca acacttcctt ctaatacaac
     3601 gaaagaagtt ccagtaatcg gatttttagc tcatttagat acagcgacgg acttaacagg
     3661 caaaaacgtc caaccacaag tccacgaaaa ttatgatggt aaagatatcg ttctaaacaa
     3721 agacttaaac gtggtacttt caccaaaaca atttccagaa ctagctgatt ataaagggaa
     3781 aacactgatt acaacagatg gaacaacgct actcggtgca gacgataaag cgggcattac
     3841 cgaaattatg gtggcaatga accatttaat taaccatccc gaaatcaaac acggtaaaat
     3901 tcgtgttgct ttcacaccag atgaagaaat tggccgagga ccagaacgtt ttgatgtaga
     3961 agcatttggc gcaaaatatg cttatacaat ggacgggggc ccacttggag aactagaata
     4021 tgaaagtttt aacgctgcag gtgccaaaat cacttttaat ggtaatagtg ttcaccctgg
     4081 tacagcaaaa aacaaaatgg ttaatgctgt caaaatggca atggaattca atgcacacat
     4141 tccaaaagac gaagcgcctg agtacacaga aggttacgaa gggttttatc atttaatttc
     4201 cttaaacggt gatgtagagc aagccaaagc ctactatatt atccgcgatt tcgatcattt
     4261 gaaatttgtg gaaagaaaaa cacatattgc tagtatcgcc aaagagttag aagaaaaata
     4321 cggcgaagga tcggtagaat taaaactgaa cgatcaatat tacaatatgc gcgaaaaaat
     4381 cgaaccagta aaagaaattg tggatatcgt cagcgcggcg atgagaaatc tagacattga
     4441 accgaaaatc agcccaattc gtggcggaac agacggcgct caactttcct acaaaggact
     4501 accaacacct aatatttttg gtggaggaga gaacttccac ggtaaatttg aatatgttgc
     4561 attagaaagt atggttaaag caacagaagt aatcattgaa gtggctcgtt tatttgaaga
     4621 aaaagaataa taaaaaagtg agtctagttc atcctagact cactttttct atgcgctcat
     4681 ttactctagc agt
//
LOCUS       DASEAA010000195         4691 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.195, whole genome shotgun sequence.
ACCESSION   DASEAA010000195 DASEAA010000000
VERSION     DASEAA010000195.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4691
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.195"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            131..832
                     /locus_tag="U0342_002621"
     CDS             131..832
                     /locus_tag="U0342_002621"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbonic anhydrase"
                     /protein_id="HEM2423950.1"
                     /translation="MTKEKVLWGYDEKTGPEMWGHICSDFEIAHTGKAQSPVDIEQAD
                     VVKLKPSTMKFYYKETDYTIRRIEQSVHVFPHDKEQGLRFNGEYYPLVSFHAHIPAEH
                     LLDGYVYPIEWHFVHEKPDGTTLVMSAWMEIDNTNNVEFKDLPTYFPEVFADFETERE
                     ITLDVNEFMPEERVFYTYQGSRTTPPTVEGVTWIVLKNAKTLGQEDFTEFEKAIGNTS
                     RPVQDLNGREITFYN"
     gene            900..1442
                     /locus_tag="U0342_002622"
     CDS             900..1442
                     /locus_tag="U0342_002622"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012985137.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bifunctional (p)ppGpp
                     synthetase/guanosine-3',5'-bis(diphosphate)
                     3'-pyrophosphohydrolase"
                     /protein_id="HEM2423951.1"
                     /translation="MYEKARQMMIEAHSGQVRKITGEPYFSHPLNVARILRRAGFREE
                     VVVAGLLHDAVEDTEMTDADIRATFGDEVADLVASHTENKTLSWEERKAHTIEQVRTG
                     SLEEKALIVADKLDNLTSVKYALSSEGKSVWSYFKRGYDLQKWYNQGIKNNMEYGLNP
                     SEIPPFFGEYARLVKWIFKK"
     gene            1578..2450
                     /locus_tag="U0342_002623"
     CDS             1578..2450
                     /locus_tag="U0342_002623"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464340.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family protein"
                     /protein_id="HEM2423952.1"
                     /translation="MVYGAIEAGGTKFVVAIGEKSGKIIKRESYPTTEPAETMKAVIQ
                     FFKQYEDELKAIGIGSFGPIDIRKSSATYGYITQTPKLAWRNYDIVGAMKKEFNVPIG
                     FTTDVNAAALGEVSLGAAAGLDSCIYLTIGTGIGGGAVVSGKILEGFSHPEMGHIMVR
                     RHKRDRFTGSCPSHSDCLEGLAAGGAIEKRWGQKAAELADNEEVWNLEAHYIAQALMN
                     YTLILSPERIVLGGGVMKQRQLFPLVRQKLKALVNNYVQLPDLDEYIVPPKLEDDAGI
                     TGCVLLAVDAEESN"
     gene            2535..3464
                     /locus_tag="U0342_002624"
     CDS             2535..3464
                     /locus_tag="U0342_002624"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015454391.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nitronate monooxygenase"
                     /protein_id="HEM2423953.1"
                     /translation="MSITNLLNIKYPIIQGAMAQIAKAPLVAAVSNAGGLGIIASGGM
                     TADMLREEIKKTKALTDKPFGVNLMLMMTNIAELTEVIIEEKVGIVTTGAGTPKTFMP
                     IWKEAGIIVISVVPSVMIAKRMEKMGADAVIAEGTEAGGHVGETTTMALLPQIVDAVT
                     IPVIGAGGIADGRGIVAALALGAKGVQIGTRFLATDECPVHPDFKAAVIKASDRDTMV
                     TGRKAGAPVRSIKNKMIKEYIRLEEENADRDTLEELTLGSLRKAVQEGDTDNGSVMAG
                     QIAGLITEIKPCKDVIEEMMTDAKNVIAGLELN"
     gene            3692..4144
                     /locus_tag="U0342_002625"
     CDS             3692..4144
                     /locus_tag="U0342_002625"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2423954.1"
                     /translation="MKDILRDIGVIARALDSISNIEFKELNLAKGQFIYLVRICENQG
                     IIQEKLVDILKIDRTTASRAIKNLEKNGLIIKKQDKNNKKNKLLFPTEKGQQLYPLII
                     RENEYSNAVALKGFTEAEINMLADALKKVKENIADDWLYVKKGNKRSY"
     gene            4160..4666
                     /locus_tag="U0342_002626"
     CDS             4160..4666
                     /locus_tag="U0342_002626"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2423955.1"
                     /translation="MIKLCTISDSQALLEISYKTFDETFRAQNKPENMDAYLKTNFTA
                     KKLSDELKNTHSYFYFVFHQEAIAGYLKLNIGDAQTEEIAGNTIEIERIYVLKSFQKK
                     GLGKELFNQAIEIAKEVDAERIWLGVWEKNKNAIQFYAKLGFIKNGQHDFFMGDDCQT
                     DIIMIKDL"
BASE COUNT         1635 a          765 c         1018 g         1273 t
ORIGIN      
        1 aagccaccag tatcttcacg tgagttcaca ccaaagtcaa aacacgaaca ttaagcatat
       61 aacttgtgga atagatcagc tatccgctaa aataatgtta cgcaattttt ttcgaaaagg
      121 agaaatggtt atgactaagg agaaagtgtt atggggttac gatgaaaaga ctgggccaga
      181 aatgtggggg catatctgct ctgactttga aatcgcacat actggaaagg cacaatcgcc
      241 agtagatatt gaacaagctg acgttgtgaa attaaaacca tcaacaatga aattttacta
      301 taaagaaaca gactatacga ttagaagaat tgaacaatcg gtgcatgttt ttccgcatga
      361 caaagaacaa gggttacgct ttaacggcga gtattatccg cttgtatcgt tccatgcaca
      421 tattccggcg gagcatttgc ttgacggtta tgtatatccg attgaatggc attttgttca
      481 tgaaaaacca gacggcacaa cgcttgtaat gagtgcttgg atggaaattg ataatacaaa
      541 taatgtcgaa ttcaaagatt taccaaccta tttcccagaa gtgttcgctg attttgaaac
      601 agaacgggaa attactttag acgtgaatga atttatgcca gaagaacgtg ttttctatac
      661 gtaccaaggt tcacggacaa caccaccaac cgtggaaggc gtaacttgga tcgtgttaaa
      721 aaatgcgaag acacttggcc aagaagattt cactgaattt gaaaaagcaa ttggtaatac
      781 aagtcgacca gtgcaagatt taaatggtcg tgaaattact ttttacaatt aaaaaactag
      841 aaagcctcgc tcgaatcttg tatagtatag acatagattc tgagtggagg cttcttttta
      901 tgtatgaaaa agcgagacag atgatgattg aagcgcatag tggccaagtt cgcaaaatta
      961 ctggcgagcc ttatttttcg caccctttga acgtagcgag aattttgcgc cgcgctggtt
     1021 ttcgcgaaga agttgttgtc gcgggattac tgcacgatgc cgttgaggat acggaaatga
     1081 ccgatgccga tattcgcgca acatttggtg atgaagtagc tgatttagta gcgtctcata
     1141 cagaaaataa aacgttatct tgggaagaac gaaaagccca tacgattgaa caagtccgca
     1201 ctggcagcct agaagaaaaa gcattaatcg tggcggataa gctagacaat ttaacctccg
     1261 tcaaatatgc cttaagctca gaaggaaagt ctgtctggag ctattttaaa cgcggctatg
     1321 atctgcaaaa atggtacaac caagggatta aaaataatat ggaatacgga ttaaatccat
     1381 ctgaaatccc tccatttttt ggtgaatatg cgcgacttgt gaagtggatt tttaagaagt
     1441 aaattttgta tttaaatatc tgttaaatta ggtatttaga attaaaatta taagttttta
     1501 gaaaataagt ttctttttcc agaaatctat tgtaaaatga aagcgttata aaacttacga
     1561 gaagggaagt tttttgaatg gtttatggag caattgaagc aggcggaact aagtttgttg
     1621 tagcaatcgg agaaaagtca gggaaaatta ttaagcgcga gagctacccg acaacggagc
     1681 cagcagaaac aatgaaagca gtcattcaat tttttaaaca gtatgaggat gaattaaaag
     1741 caattgggat tggctcattt ggaccgattg atattcggaa atcaagtgct acatacggtt
     1801 atatcacgca aacaccaaaa cttgcatggc gcaattatga tatcgttggt gcaatgaaaa
     1861 aagaatttaa tgtacctatt ggttttacga cggatgttaa tgcagccgct ttaggagagg
     1921 taagtttagg cgcggcagca ggtttggata gttgtattta tttaacgatc ggaacaggaa
     1981 tcggtggtgg agcagttgtt tcaggcaaaa ttcttgaagg cttctcccac ccagaaatgg
     2041 gacatattat ggtgcgccga cataagcgcg atcgttttac aggcagctgc ccgagtcata
     2101 gcgactgttt agaggggctt gcagcaggtg gagcaattga aaaacgttgg ggtcaaaaag
     2161 cagcagaact tgcggataat gaagaagtgt ggaatttaga agcgcattat atcgctcaag
     2221 ctttaatgaa ttatacactt atcttatccc cagaaagaat cgtgttaggt ggaggcgtca
     2281 tgaaacaacg ccaacttttc ccacttgttc gtcaaaaatt gaaggcactc gttaataatt
     2341 atgtgcaatt gccggattta gatgaatata tcgttcctcc aaagttagaa gatgacgctg
     2401 gaattacagg ctgtgtcttg ctcgctgtgg atgctgaaga gtccaattaa tggcgaaaaa
     2461 cagctctagt ttatagggct gttttttgat atactaaatt gtgataaaac aaacaagaac
     2521 gcaggaggaa aaagatgtcc attacgaact tattaaatat taaatatcca attatccaag
     2581 gtgcgatggc tcaaattgcc aaagctccac ttgtagccgc tgtatctaat gcaggcggtt
     2641 taggaattat cgcttctggc ggaatgactg ccgacatgct acgcgaagaa atcaaaaaaa
     2701 caaaagcact gacagataaa ccatttggcg tcaacttaat gctaatgatg accaatattg
     2761 ccgaattaac cgaagtaatt attgaagaaa aagtgggaat cgttacaact ggagcgggaa
     2821 cgccaaaaac gttcatgcca atttggaaag aagctggaat tattgtgatt tccgttgtcc
     2881 catccgtgat gattgctaaa cgtatggaaa aaatgggcgc agatgcagtt atcgcagaag
     2941 gaacagaagc aggcggacac gtcggcgaaa caacaacaat ggcactttta cctcaaatcg
     3001 tggatgccgt tactatccca gtcattggcg caggtggaat tgcagatggt cgcggaatcg
     3061 tcgcagcgct tgctctaggt gcaaaaggtg tccaaatcgg aacacgcttc ctagcaaccg
     3121 acgaatgccc agtacacccg gactttaaag cagccgtgat taaagcttcc gaccgcgaca
     3181 caatggttac cggaagaaaa gccggtgccc ctgttcgctc gattaaaaac aaaatgatta
     3241 aagaatacat ccgtttagaa gaagaaaacg ccgatcgcga cacgttagaa gagctaactt
     3301 taggttcttt acgaaaagca gtacaagaag gcgacacaga caacggctct gtcatggccg
     3361 gtcaaatcgc tggcttaatt acagaaatca aaccttgtaa agatgttatt gaagagatga
     3421 tgacagatgc taagaatgtg attgcagggt tagagttaaa ttaatgtttt aaactgcttt
     3481 cttttgaagc gtttgagtaa aatagctttg ataaattcct taatatatta tttggatttt
     3541 tagtaagtta taaaaagccg tgccagttca cttagtgctg atacggcttt tttagttagt
     3601 agaaaaattc atttctgttt catcaataca tcctctatgt tatactaatg caaagttata
     3661 ttattgcaaa tgcaacaaaa ggaggttggc gatgaaagat atattaagag atataggtgt
     3721 aattgcacgt gcacttgatt caataagtaa tatcgaattt aaagaattaa atctagcaaa
     3781 agggcaattt atctatctag ttagaatttg cgagaaccaa gggattattc aagaaaaact
     3841 agtagatatt ttaaaaatcg atcgaaccac tgcttcgaga gctattaaga atttagagaa
     3901 aaacggtttg attataaaga aacaggataa gaataataaa aaaaataaac tattattccc
     3961 aacagagaaa ggacagcaac tatatccctt aattatccgc gagaatgaat actccaatgc
     4021 agtagcttta aaaggattta ctgaggctga aattaatatg ctcgccgatg cgctcaagaa
     4081 ggtcaaagaa aatattgcag atgactggtt atatgttaaa aaaggcaata aaagaagtta
     4141 ttaatttgga ggaaaagtaa tgataaaatt atgtacaata agtgattccc aagcactctt
     4201 agaaataagt tataagacat ttgatgaaac attcagagcg caaaataaac cagaaaacat
     4261 ggatgcatat ttaaaaacaa attttacggc taaaaaatta agcgatgaac taaaaaacac
     4321 acattcctat ttttattttg tttttcacca agaagctatt gctggttatt taaaactaaa
     4381 tataggagat gctcaaacag aagaaatagc tgggaataca atcgaaatag agcgtattta
     4441 tgtattgaag tcattccaaa aaaagggatt aggtaaagag ttatttaatc aagcaataga
     4501 gatagcgaaa gaagttgatg cagaaagaat atggttaggt gtttgggaaa agaataagaa
     4561 cgctattcaa ttttatgcaa agctgggttt tattaaaaat ggacaacatg attttttcat
     4621 gggcgatgat tgtcaaactg atattattat gataaaagat ttataaaaaa agttgagcgc
     4681 atactaagct c
//
LOCUS       DASEAA010000196         4677 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.196, whole genome shotgun sequence.
ACCESSION   DASEAA010000196 DASEAA010000000
VERSION     DASEAA010000196.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4677)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4677)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4677
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.196"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            112..585
                     /locus_tag="U0342_002627"
     CDS             112..585
                     /locus_tag="U0342_002627"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465661.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2423956.1"
                     /translation="MDIQDLDISKVISPALVNLDLQATSKLEVIEELTDLLVETGAVA
                     DKDAFIADVLYREEEGKTGLGEGVAIPHGKSASVTSTSIAVGRTKKPVEWESLDDKPV
                     NIIILFAVKNSDATTTHIKLLQKVAILLADDEVIGQFQTVKTKEDLIKLLAKNQD"
     gene            598..909
                     /locus_tag="U0342_002628"
     CDS             598..909
                     /locus_tag="U0342_002628"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465660.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIB"
                     /protein_id="HEM2423957.1"
                     /translation="MNIIGIAACTSGIAHTYIAKEKLTKAGTALGHNVHIETQGTIGI
                     EDELSAEQVKNADVVIIAADIKISGKDRFKGKRVVEIPTDLAIKAPKQIINKIDKEIN
                     N"
     gene            926..2020
                     /locus_tag="U0342_002629"
     CDS             926..2020
                     /locus_tag="U0342_002629"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465659.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS fructose transporter subunit IIC"
                     /protein_id="HEM2423958.1"
                     /translation="MKKLQIKKHALTAISYMLPLVVASGLLIAIGNLTNGQVIENYKA
                     PYSIPDALVSLGVLGMGLLAPVIAGAIAYSIADRPGIAPGLLMGLIANSIGAGFLGGM
                     LGGYLVGYFVLILVKYLKVPKWAQGLMPMMIIPLISSLVVGLLMYFVVGVPIVWATEA
                     MTSFLQGMQGSMRFVFGAVLGAMAAFDFGGPVNKVASLFADGLLLEGVKEPEAVKILA
                     SMVPPFGVTLSWVVSKLIKKKKYTKSEEDNIKIAFPMGICMITEGVIPIAAVDPIRVI
                     ISCTLGAAVGGGLSMTWGIGSPVPSGGMFIVPAMNEPLLFCLALLIGTCVTAAMLLIL
                     KREPTKEEELIADQGLEEEDEVDLSGIKIS"
     gene            2038..2892
                     /locus_tag="U0342_002630"
     CDS             2038..2892
                     /locus_tag="U0342_002630"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465658.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class II fructose-bisphosphate aldolase family
                     protein"
                     /protein_id="HEM2423959.1"
                     /translation="MYVSMKGMLERANKEHYAVMAINCFNLETARAVIDAAQELRAPI
                     IIDLLQDHLTSHLGSRFLTKPIIKMAEEASVEVAINLDHGHDVAIVKQCLADGFSSVM
                     MDASSFPYEENVAITKKMVEFAEVYHASVEAEVGNIGAVTGDNYTNQEMYTDPKVAID
                     FAKRTGIDALAISYGSSHGDYPEGFTPAFQFDIVREIKSATNMPLVLHGGSGCGAENI
                     RESVRLGINKINVGSDFMKAQVNQIKTNLKENPAVNYVDLIHETIKAGTKAVKNYIQL
                     SGSTGKSL"
     gene            2909..3808
                     /locus_tag="U0342_002631"
     CDS             2909..3808
                     /locus_tag="U0342_002631"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465657.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ketose-bisphosphate aldolase"
                     /protein_id="HEM2423960.1"
                     /translation="MLVNMKQLLEVAKENKFAVGAFNVADSNFLRVVVEEAEKNNAPA
                     IIAVHPTELDFTKDDFFQYVLARIKNSPVPFVLHLDHGDNMGDVMRAVRCGFSSVMID
                     GSLLPFEENIRVTKEVVDVCHKLGVSVEGELGTIGKTGNSIEGGVSEIIYTKPEEAEE
                     YISRTGVDTLAVAIGTAHGIYPKDKEPKLRLDILKEIKDLVNIPLVLHGGSANPEAEI
                     AAAVEIGIQKVNISSDYKYAFYKKCREILSTTELWDANAIYPDCIDAAKEVVKYKMEL
                     FESIGQVEKYQQAKTTAWRSELI"
     gene            complement(3838..4548)
                     /locus_tag="U0342_002632"
     CDS             complement(3838..4548)
                     /locus_tag="U0342_002632"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003722256.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423961.1"
                     /translation="MYLKETLDQFASIDNILKLLKKNPSFNKHCIQERLPQKTIITSN
                     KQRKHIYIIEEGFMKLIFDDNKPRDFSYILSKGAFPFLPVYTEDIPEHTMMVALTDIV
                     WWKIDISFFKGMMETEDPRNYLMLHQLAETRRRFYTIAYQEKLTSRESIYYSLSTMIE
                     FGLRISEKIVELPEFLTYQILADHANTSKSYTSKVLGHLREEGILESQRKPWRINDVQ
                     KLQKLIEMNVPLVKIQKN"
BASE COUNT         1514 a          772 c         1015 g         1376 t
ORIGIN      
        1 taatgcagaa agtacaaaag aaatcccatc gttacttgta agtgcgatgt ttaccgagaa
       61 agataaaata atggtaaaaa aactgatgga aagtttatag gaggcgaatt catggatatc
      121 caagatttag atattagtaa agtaataagc ccagcacttg taaatttaga cttacaagct
      181 acaagtaaat tagaagtcat tgaagagtta acagatttac ttgttgaaac tggggcagta
      241 gcagacaaag atgcttttat agcagatgta ttatatcgcg aagaagaagg caaaacggga
      301 ctaggagaag gagtcgctat tccacacggg aagtcggcga gcgttacgag tacatccatt
      361 gccgttggaa gaactaaaaa acctgttgag tgggagtcgc ttgatgataa accagtaaat
      421 attattattc ttttcgcagt gaaaaattca gatgctacaa caactcatat taaattactt
      481 caaaaagtag caatcttact tgcggacgat gaggtgattg gccaatttca aactgtaaag
      541 acaaaagaag atttaattaa gttgttagcc aaaaatcagg attaggagga gtttggaatg
      601 aatattattg gaatagcagc ttgtacatcg ggaatcgcac atacgtatat tgctaaagaa
      661 aaactaacaa aagcagggac agcgcttggt cacaacgttc atattgaaac acaaggaaca
      721 attggtatcg aagacgagct ttcagcagaa caagtgaaaa atgccgatgt agttattatt
      781 gctgccgata ttaaaattag cggaaaggat cgttttaaag gaaaacgagt tgtcgaaatt
      841 ccaacagacc tagcgattaa agcaccaaaa caaattatta ataaaataga caaagaaata
      901 aataactagg gagtgaaccg gtatgatgaa aaaactgcaa atcaaaaaac atgcacttac
      961 agcgatttcg tatatgttac cgttagttgt tgcctcgggg ttacttattg ccattggaaa
     1021 tttaacaaat ggacaagtta ttgaaaacta caaagcacct tattcgattc cagatgcact
     1081 tgtctctctc ggtgtgcttg gtatgggact gcttgctcca gttattgctg gtgcgattgc
     1141 ctattcgata gcagataggc cgggaattgc gccagggtta cttatgggac ttatcgccaa
     1201 ttcaatcggt gctggatttt taggcggaat gcttggagga tacttagtcg gttattttgt
     1261 acttattctt gtgaaatatt taaaagtgcc aaaatgggcg caaggtttaa tgccaatgat
     1321 gattattccg cttattagta gtttagtcgt cgggcttctg atgtactttg ttgtaggggt
     1381 tccaatcgtt tgggccacgg aggcgatgac aagcttctta caaggcatgc aaggcagtat
     1441 gcgctttgtt ttcggagctg tacttggagc tatggcagca tttgactttg gtggacctgt
     1501 aaataaagtg gcctccttat tcgcagatgg gctccttctt gaaggcgtca aagaaccaga
     1561 agcagtaaaa attcttgctt cgatggttcc gccattcggg gtgacccttt catgggtagt
     1621 ttccaaatta attaaaaaga aaaaatacac gaagtcagaa gaagacaata tcaaaattgc
     1681 tttcccgatg gggatttgta tgattacaga aggtgttatt cccattgcag cggttgaccc
     1741 cattcgcgtt attatttctt gtacacttgg tgcggcagtc ggcggaggtc ttagtatgac
     1801 ttggggaatt ggctcaccag ttccatcagg cggaatgttt atcgtcccag caatgaatga
     1861 accactctta ttctgtttag cattattaat tggtacttgt gtcacagcag ccatgttact
     1921 catcttgaaa cgagaaccta ctaaagaaga agaactcatt gctgaccaag gattagaaga
     1981 ggaagatgaa gttgatctgt ctggaattaa aatttcataa ggtgaggaga ttttgaaatg
     2041 tatgtgtcca tgaaaggtat gttagaacgt gcgaacaagg agcattatgc agtaatggca
     2101 attaattgtt ttaatctgga aacggctcgt gcagtcattg atgctgcaca agaacttcgt
     2161 gcgccgatta tcattgattt acttcaagat catttgacaa gtcatctagg aagtcgcttt
     2221 ttgacaaaac ccattataaa aatggcagaa gaagcgagtg ttgaagtggc aattaatttg
     2281 gatcacgggc atgatgtggc gatagtgaag caatgcttag cggatggttt ttctagtgtg
     2341 atgatggatg cgtctagttt tccttatgaa gaaaacgttg caattacgaa aaaaatggtc
     2401 gagtttgcag aagtttatca tgctagtgtc gaggcggaag ttggtaatat tggtgcggtg
     2461 actggagata attacaccaa tcaagaaatg tataccgacc ccaaagtggc catcgatttt
     2521 gctaaacgaa cagggattga cgctttagca atttcttatg gttcttccca tggtgattat
     2581 ccagaaggtt ttacaccggc tttccagttt gatattgtca gagaaatcaa atccgcgaca
     2641 aacatgccgc tcgttttgca cggaggttct ggttgcgggg cggaaaatat tcgagaatcc
     2701 gttcgactgg gcatcaataa aatcaatgtt ggctccgact tcatgaaagc acaagtaaat
     2761 caaataaaaa cgaatttaaa agaaaatccg gccgttaact atgtggactt aattcatgaa
     2821 acgataaaag ccggcacaaa agctgttaaa aattatattc aactatccgg ttcaaccgga
     2881 aaatcacttt aaaaggagaa atgaaaatat gttagtaaat atgaaacaat tattagaagt
     2941 agctaaggaa aacaaattcg cggtgggagc atttaatgtt gcagacagta actttttacg
     3001 ggtggtagta gaagaagctg aaaaaaacaa tgctccagca attattgcag tgcatccaac
     3061 agaattagat tttacgaaag atgacttttt ccaatatgtt cttgcaagaa ttaaaaatag
     3121 tcctgttcca tttgttcttc atttggatca tggtgacaat atgggagatg tgatgcgagc
     3181 ggtacgttgt ggttttagtt cagtgatgat tgatggctct ttgcttcctt ttgaagaaaa
     3241 tattcgtgtt acaaaggaag ttgttgatgt ttgtcataaa ctgggggtct cagttgaagg
     3301 tgagctcggg actatcggga aaaccggtaa cagtattgaa ggcggcgtca gtgagattat
     3361 ctatacaaaa cccgaagaag cggaagaata tattagtcgc acgggtgtag atacgctagc
     3421 tgttgcaatc gggacagcgc acggaattta tcctaaagat aaggagccaa aattacgtct
     3481 agatatctta aaagaaataa aagatttagt gaatattcca cttgtacttc acggtggttc
     3541 tgcaaatcca gaagccgaaa ttgctgcagc tgtcgaaatt ggaattcaaa aagtaaatat
     3601 ttccagcgat tacaaatacg ccttttataa gaaatgtcgt gagattctaa gtacaacaga
     3661 actttgggat gccaacgcaa tctacccaga ctgtattgat gcggcgaaag aagtggtgaa
     3721 atataagatg gaactttttg agtctattgg tcaagttgaa aaataccaac aagcaaaaac
     3781 cacagcttgg cgaagtgaac taatctaaca aaaaaaacta agagcgcaag ttggctctta
     3841 gtttttttgt atctttacaa gtggtacatt catctctatt aacttttgga gcttctggac
     3901 atcgttaatt cgccaaggct ttctttgtga ttccaaaatg ccttcttctc gtaaatgtcc
     3961 tagaacttta gacgtgtagc ttttagaagt attagcatga tcagcaagta tttgataagt
     4021 taaaaattct ggaagttcta ctattttttc ggagatacgt aggccaaatt caatcattgt
     4081 acttaaagaa taataaatac tttcacgtga agtcaatttt tcttgataag cgatagtgta
     4141 aaatcttctt ctagtttccg ctaattgatg aagcatgaga taatttcgcg gatcttccgt
     4201 ctccatcatc cccttaaaga aactgatatc aattttccac catacaatat ctgtaagagc
     4261 aaccatcatt gtgtgttcag gtatatcctc tgtataaact ggcaaaaagg gaaatgctcc
     4321 tttagacaaa atataagaaa aatcacgcgg tttgttgtca tcaaatatta gtttcataaa
     4381 accttcttct attatataga tatgttttcg ttgtttattg gatgtgataa ttgttttttg
     4441 tgggagccgc tcttgaatgc agtgcttatt aaaactcgga tttttcttga gcagtttaag
     4501 aatattatct atcgaagcaa attgatctaa cgtttctttt aaatacatac cattcccccc
     4561 tatgtcatta gtttcccgca atataagcgc ataaaactta ttcttctagt agaatatttt
     4621 tgcgtaaaca taagcgggga agaataaaaa caggaattaa taactttcac aaataat
//
LOCUS       DASEAA010000197         4661 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.197, whole genome shotgun sequence.
ACCESSION   DASEAA010000197 DASEAA010000000
VERSION     DASEAA010000197.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4661)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4661)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4661
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.197"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(208..1704)
                     /gene="lysS"
                     /locus_tag="U0342_002633"
     CDS             complement(208..1704)
                     /gene="lysS"
                     /locus_tag="U0342_002633"
                     /EC_number="6.1.1.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lysine--tRNA ligase"
                     /protein_id="HEM2423962.1"
                     /translation="MSNENHEELNDQLIVRREKVDTLREEGIDPFGEKFIRSISPEEI
                     ETKFADKSKEELEEAAIEVSVAGRIMTKRVKGKVGFTHIQDRFHQLQIYIRKDAIGED
                     AYAVFKLADLGDIIGIKGTIFRTNTGELSVKATEFTLLSKSLRPLPDKYHGLKDVEQR
                     YRQRYLDLITNEESQNRFVMRSKILKYTRDYMDNQGFLEVETPVLHTIAGGAAAKPFI
                     THHNALDMELYLRIALELHLKRLIVGGMDKVYEIGRVFRNEGTSTRHNPEFTMLESYA
                     AYEDYEDVMDLVEGLVSTVCKQVNGTTEITYGEYNVDLTPNWRRIHMADAVKEYVGVD
                     FWNVTSDEEARELAKKHNVPVTEHMTYGHILNEFFETYVEEKLIQPTFVYGHPVEISP
                     LAKKNKEDDRFTDRFELFIVGREHANAFSELNDPIDQRERFEAQMKEREQGNDEAHGM
                     DADFLEALEYGLPPTGGLGIGIDRLVMLLTDAPSIRDILLFPTMKRRD"
     gene            complement(1819..2814)
                     /gene="dusB"
                     /locus_tag="U0342_002634"
     CDS             complement(1819..2814)
                     /gene="dusB"
                     /locus_tag="U0342_002634"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463758.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA dihydrouridine synthase DusB"
                     /protein_id="HEM2423963.1"
                     /translation="MFKIGNVEIKNQVVVAPMAGISNSAFRLTVKEFGAGLVCCEMIS
                     DKGIAYRNAKTLDMLYIDEKEKPLSLQIFGGEKETLVEAAKFVAENTTADIIDINMGC
                     PVNKIIKCEAGAKWLLDPNKVYDMVAAVVDAVDKPVTVKMRIGWDEEHVFAIENALAA
                     ERAGAAAVAMHGRTRVQMYEGSANWDVLRDVKRELKIPFMANGDVRTPEDAKRILEHT
                     GADGVMIGRAALGNPWMIYRTVKFLETGELLPEPEPREKMQTAMLHLNRLVELKGENI
                     AVREFRQHAAYYLKGARGSTRAKVAANQATKQSEMEAILNEFVLQYEEKALAKQD"
     gene            complement(2890..3369)
                     /gene="folK"
                     /locus_tag="U0342_002635"
     CDS             complement(2890..3369)
                     /gene="folK"
                     /locus_tag="U0342_002635"
                     /EC_number="2.7.6.3"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463757.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="2-amino-4-hydroxy-6-
                     hydroxymethyldihydropteridine diphosphokinase"
                     /protein_id="HEM2423964.1"
                     /translation="MAKAFLSIGTNLGERLENLNDALSGLAASDKIKITNVSSVYETD
                     AVGYEDQAAFLNIAVEIETDFPPVDLLDFCLALELELGRVRLFKWGPRLIDIDVLLYD
                     DVKIDTEKLKIPHPYMKERAFVLIPLIEISPEKSNLVDNPAILEEQGVRKIKNQVNW"
     gene            complement(3362..3736)
                     /gene="folB"
                     /locus_tag="U0342_002636"
     CDS             complement(3362..3736)
                     /gene="folB"
                     /locus_tag="U0342_002636"
                     /EC_number="4.1.2.25"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroneopterin aldolase"
                     /protein_id="HEM2423965.1"
                     /translation="MDKIYLNELVFYGYHGVLAEETKLGQTFRVSLILGLSTKKAGIS
                     DSVDDTVSYAEVYETVKEIVEGTPFKLIEALAEKIATEVLTGYPLLEEVTVKLIKPNP
                     PIPGHYDSVAVEIERKRSDLNG"
     gene            complement(3750..4565)
                     /gene="folP"
                     /locus_tag="U0342_002637"
     CDS             complement(3750..4565)
                     /gene="folP"
                     /locus_tag="U0342_002637"
                     /EC_number="2.5.1.15"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydropteroate synthase"
                     /protein_id="HEM2423966.1"
                     /translation="MKKWKRDHLGMVMGILNVTPDSFSDGGKYMQVEEAVARALQMAE
                     DGAAIIDVGGISTRPGFSEVTPEEELNRIIPVIKAVRTKLPDIWISVDTWRAEVAEKA
                     ILAGANMINDQWGAKKEPKIAEVAAKYNVPICLMHNRENTQYDNFLEDVKKDLLESVA
                     IAKAASVPDEHIILDPGFGFVKTPAQNLEVLRRIDEIVALGYEVLLGTSRKSTIGLVL
                     GTTPEDRMEGTGATTVYGFSKGCTITRVHDVLPIARMVRMTDAITGKLDITKL"
BASE COUNT         1253 a         1025 c          807 g         1576 t
ORIGIN      
        1 tagtcaacaa agtcaagatg ttttttcaaa aaaatttaat ttcttgatga gcattttgcg
       61 tttgtttaac tggaacgttt ataaatatat catgttttta tagggattgc aagcatattt
      121 tgagaaaaag tttctctttg gcaaatttgt ttttttctga gaaaaaaaca aaatccagaa
      181 ccgatataat cagctctgga tttttaatta gtcgcggcgt ttcatagttg ggaataatag
      241 gatatcacga atagacgggg catctgttaa tagcattact agacgatcga tacctattcc
      301 aagtccacca gtcggcggta gaccgtattc taaagcttca aggaaatctg catccattcc
      361 gtgcgcttca tcattacctt gctcacgttc tttcatttgc gcttcaaaac gctctctttg
      421 atcaattgga tcgtttaatt ccgagaatgc atttgcatgt tcacgaccaa cgataaataa
      481 ttcaaaacgg tcagtaaaac ggtcatcttc tttgtttttc ttcgctaatg gtgaaatttc
      541 caccggatgt ccgtaaacaa aggttggttg aataagcttt tcttctacgt atgtttcaaa
      601 aaactcatta agaatgtgcc cgtatgtcat gtgctccgtt actggcacat tatgtttttt
      661 agctagttcg cgtgcttctt catcggaagt tacgttccag aaatccactc cgacatattc
      721 ttttacagca tctgccatgt ggatacggcg ccagtttgga gttagatcta cattgtattc
      781 accgtatgtt atttctgttg ttccatttac ttgtttgcat actgtagata ctaaaccttc
      841 taccaaatcc ataacatctt cgtaatcttc gtatgctgca taggattcta acattgtaaa
      901 ttctgggtta tgacgcgtgg aggttccttc attacggaaa acgcggccga tttcgtatac
      961 tttatccatc ccaccaacga ttaggcgttt taagtgtagt tctaaagcaa ttcgtaaata
     1021 taattccata tcaagtgcat tatggtgcgt aataaatggt tttgcagcag caccaccagc
     1081 aattgtatga agcactggag tttctacttc taggaatcct tgattatcca tgtaatcacg
     1141 agtgtatttc aagattttac tgcgcatcac aaaacgattt tggctttctt cgtttgtaat
     1201 taagtctaaa tagcgttgac gatagcgttg ttctacgtct tttaagccat gatatttatc
     1261 aggaagtgga cgtaatgatt tggaaagcaa agtgaattcc gttgctttaa cagaaagttc
     1321 acctgtatta gtacggaaaa tagtcccttt tataccaata atgtcaccta gatccgctaa
     1381 tttgaagact gcataagcat cttcgccaat cgcatcttta cggatataga tttgtaattg
     1441 atggaaacgg tcttgaatat gtgtgaaacc tactttgcct ttcacacgtt tcgtcataat
     1501 acgacctgct acagaaactt caatagcagc ttcttcaagt tcttcttttg atttatcagc
     1561 gaattttgtt tcaatttctt ccgggctgat ggaacggatg aatttttcgc caaaaggatc
     1621 tatgccttct tcgcgtaatg tgtccacttt ttcgcgacgg acgatgagtt ggtcatttag
     1681 ttcttcatga ttctcgttac tcatataggt acactcctat tctattcatt tctacagatg
     1741 tttccattat acgctttttt ggtctggttt ttctagtata aatttaaaaa ttgccccgaa
     1801 atctcgaggc aatcctaatt agtcttgttt cgctaatgct ttttcttcat attgaagaac
     1861 aaattcattt aaaattgctt ccatctctga ttgttttgtc gcttggttag cagccacttt
     1921 cgcgcgagtg cttccgcgag ctccttttag ataataagct gcgtgttgtc taaactcgcg
     1981 aactgcaatg ttttctcctt ttagctcgac taggcgatta aggtgaagca tggcagtttg
     2041 cattttttcg cgtggttctg gttctggaag aagttcgcct gtttctagga atttcaccgt
     2101 gcgataaatc atccatgggt ttccaagtgc agctcgacca atcattactc catctgctcc
     2161 agtatgttct aaaattcgtt tggcatcttc tggtgttctc acgtccccat ttgccatgaa
     2221 cgggattttc agttcgcgtt ttacgtctct aagcacatcc cagttcgcgc taccttcgta
     2281 catttgcaca cgagtacggc cgtgcattgc aacagctgca gctccggcac gttcagcagc
     2341 aagtgcattt tcgatagcaa agacatgttc ttcgtcccaa ccaatacgca tttttactgt
     2401 taccggttta tcaacagcgt ccactacagc agctaccatg tcatacactt tatttggatc
     2461 aagtagccat ttcgctccag cttcacattt gataattttg tttaccggac agcccatatt
     2521 aatatcaata atatctgccg ttgtattttc agctacgaat ttcgcagctt ctacaagcgt
     2581 ttctttctca ccaccaaaaa tttgtaagct caatggtttt tctttttcat caatatatag
     2641 catatcaagc gttttagcat tgcggtatgc gattcctttg tcgctaatca tttcacagca
     2701 aacgagacct gctccgaatt ctttgaccgt taaacggaat gcggaattgg atataccggc
     2761 cattggcgcc acaactactt ggtttttaat ttctacgtta cctattttaa acattaatgg
     2821 taaacccctt cctcttaaat tgcgctagtg atatgttatc ataatcagtt ttttctgcaa
     2881 gtgccaattt taccagttga cttgattttt tattttccga acaccttgtt cttccaaaat
     2941 ggctggatta tctacaagat tgcttttttc tggtgaaatc tctattaatg gaatcagcac
     3001 aaaagcgcgt tctttcatat aaggatgtgg gattttcagc ttttctgtat cgattttaac
     3061 atcatcatat aataaaacat cgatatcaat gagtcgcgga ccccacttaa ataatcgaac
     3121 tcgccccaat tcaagttcga gcgcaaggca aaaatctagt aaatcaactg gcggaaagtc
     3181 cgtttcaatt tctacagcga tatttaaaaa tgccgcttga tcttcgtaac ctactgcgtc
     3241 tgtttcgtat acactagata cgttggtaat tttaatttta tctgaagcag ctaaaccact
     3301 tagtgcgtca tttaaatttt ctaaacgttc gccaaggttt gtaccaattg atagaaacgc
     3361 cttagccatt caaatcactt cttttacgtt caatttccac tgcaacagaa tcataatgtc
     3421 ccggaatcgg aggatttggt ttaataagtt ttacagtcac ttcttctaat agaggataac
     3481 cagttaaaac ttccgttgca attttttcgg caagcgcctc gattaatttg aatggcgttc
     3541 cttccactat ttcttttacc gtttcataaa cttctgcata gctgactgtg tcgtctacgc
     3601 tatccgatat tcctgctttt ttagtagaaa ggccgagaat aagcgatact ctaaacgttt
     3661 gtcctagttt tgtttcttcc gccaaaactc catggtatcc gtaaaacact aattcattta
     3721 aataaatttt atccaactaa agcacctctt tataattttg taatatctaa tttgccagta
     3781 atcgcatctg tcattcgtac catgcgcgca atgggaagta catcgtgtac acgagtaatt
     3841 gtgcaacctt tcgaaaatcc gtaaactgta gttgctccag ttccttccat tctatcctct
     3901 ggagtagttc ctaagacgag accaattgtc gactttctac tcgtaccaag taaaacctcg
     3961 taaccaagcg ccactatctc atcaatgcgt cgtaacactt ctaaattctg cgcaggtgtc
     4021 ttaacaaaac cgaaacccgg atcaagaata atatgttcat ctggcacgga tgccgcttta
     4081 gcaattgcaa cactttctaa taagtctttc ttcacatctt ccagaaaatt atcgtattgc
     4141 gtgttttctc ggttgtgcat caaacaaatt ggcacgttat atttcgcagc tacttccgca
     4201 attttcggtt cttttttggc accccattga tcatttatca tattagctcc tgctaaaata
     4261 gctttttcag ccacttcggc acgccaagta tcaacagaaa tccatatatc cggaagtttt
     4321 gtcctaacag ctttaatgac aggaataatt cgattaagtt cttcctcagg cgttacctct
     4381 gaaaaaccag gccgagtaga tattccacca acgtcaataa ttgctgctcc atcttctgcc
     4441 atttgtaacg ctcgagccac agcttcttcc acttgcatat atttcccgcc atccgaaaaa
     4501 gagtctggcg taacattcag tatccccatg accataccta agtgatccct tttccacttc
     4561 ttcaagccca aacacctctt tccgagattt attatagcag aattcagtga ttttagcgca
     4621 caaaaaaacc gatgcggaaa agggagtaaa ccgcatcggt c
//
LOCUS       DASEAA010000198         4526 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.198, whole genome shotgun sequence.
ACCESSION   DASEAA010000198 DASEAA010000000
VERSION     DASEAA010000198.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4526)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4526)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4526
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.198"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            102..815
                     /locus_tag="U0342_002638"
     CDS             102..815
                     /locus_tag="U0342_002638"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464361.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diguanylate phosphodiesterase"
                     /protein_id="HEM2423967.1"
                     /translation="MLNQKYQLLLQNEYDTKSGDLVKKEIVAIKKTKNLLEDLTTHLL
                     CVTNQTEYGKFINWYEMEVKKVLQVYPNQHFIVKISFQQLYFRETMLLLENLQKDSRR
                     ITIELVGDSQISPNSKEHFSAEDSDAFLKGKLKMLRKWHYFISKHIESGAIEQTLIFT
                     PYIDELKYSLTQKSKLLNNITELKFFLSFWKNWAELRFVDFLVLVDEKNEFVSYVLLP
                     DELNVRCKMYENFGGMVSE"
     gene            808..1812
                     /locus_tag="U0342_002639"
     CDS             808..1812
                     /locus_tag="U0342_002639"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464362.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2423968.1"
                     /translation="MSKNVKKIVITILALIMTVGLASGFIAPIKASAATNNFTVKVEY
                     VDADGAEIAPSDTLTDYHYVSTPKDIPGYKLREIPHNATGNITDTGIIVRYIYDKIID
                     VSYVDETGKDLLPVVEIIDSEAAILETIPDYTFVRKDISIDGSHIIFRYKKNISTIPE
                     FGKPNQVTVNYLDENNTSIAPSLYLSGLFNEAYNVPMKKIKGYTLLKYDSEILGVFTE
                     SPQTINIIYQKKAPEQAPSMEPLPDTAVPENPPVEKAKIKKSKIETTEKRTISKAKIE
                     PKALKLTKVEQKKQETKDRLPKTGDSSVNLLITCLGIIAISCGVYLLVQQSQKRCRKE
                     "
     gene            complement(1855..2268)
                     /gene="psiE"
                     /locus_tag="U0342_002640"
     CDS             complement(1855..2268)
                     /gene="psiE"
                     /locus_tag="U0342_002640"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphate-starvation-inducible protein PsiE"
                     /protein_id="HEM2423969.1"
                     /translation="MKRLEKISSIVPILLRITLNLALIMVGFTLVAFLIREAFTIFNN
                     IFFLDTDVSYYYMTQDILTFFLYFEFIALIVKYFESHFHFPLRYFIYIGITAIIRFII
                     VDHSSATSTLILSGAILLLVAALFLANTKMLKREG"
     gene            2357..4078
                     /locus_tag="U0342_002641"
     CDS             2357..4078
                     /locus_tag="U0342_002641"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014092266.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2423970.1"
                     /translation="MLKRFFSYYKPYRTLFIIDFGCAVLAAILELAFPVAVNHVIDTL
                     LPGKDFGLIITAALALLFFYILNTFMQYIVTYFGHMLGLNIETDMRRDLFSHLQKQPF
                     GFYDNQKTGKLMSRMTTDLFEIGEVAHHGPEDIFISIMSLFGAFFLMLNINVKLAIST
                     FILVPILTVLIVYFNKRMTKVTTGIFKDLGNFNAGVENAISGVRVVQAFANEPHEKGR
                     FRVLNQAYRQSKLMFYKVMGLSFSFNYFLMRLISLFALLFGAYFTINGEISYGEFVGF
                     ILLTNVFIRPIEKINNVIESYPKGFAGFKRFLEVMDTEPAIQDEKDAKPAKAFRGDIA
                     YNHVSFEYSDGKNVLNHINLSIKAGETVAFVGPSGAGKTTICNLLPRFYDVSAGEITI
                     DGENIKRFTLPSLRAQIGVVQQDVFLFSGTVRENIAYGKLDASDEEIEHVVKLAHLSK
                     VVEEMPDGLDTIIGERGVKLSGGQKQRLAIARMFLKNPPILILDEATSALDTETEQVI
                     QASLEELAEGRTTLIIAHRLATIKHADRIIVVNETGIAETGTHNELLAQDNGAYKRLY
                     DAQFNTI"
     gene            4371..>4526
                     /locus_tag="U0342_002642"
     CDS             4371..>4526
                     /locus_tag="U0342_002642"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464364.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hexose-6-phosphate:phosphate antiporter"
                     /protein_id="HEM2423971.1"
                     /translation="MSLFSLKRKNHFVPLEIQRQQWFKHFIVAFMSVFICYLTVYLLR
                     NNFKAAQT"
BASE COUNT         1564 a          730 c          875 g         1357 t
ORIGIN      
        1 tttggtctta tatataagac caaatgagtt ttatggcaca tatgttgtat tatttggaat
       61 gtactaattt tcacatgctt ttttggaaag gagagatttt tatattaaat caaaaatatc
      121 aattactact tcaaaatgag tatgatacta aaagtggtga tttagtcaaa aaagaaatag
      181 ttgctattaa aaaaactaaa aatctcttgg aagatctaac tacgcatttg ttatgtgtta
      241 caaatcaaac agagtatgga aaatttatca attggtatga aatggaagtt aaaaaagttc
      301 tacaagttta tcccaatcag cactttattg ttaaaatttc ctttcaacaa ttatattttc
      361 gggaaacaat gctgttgctt gagaatttgc agaaagatag ccggcgaata acgattgaac
      421 tagttgggga tagtcagatt agccctaatt caaaggaaca tttttccgca gaagacagtg
      481 acgctttttt gaaagggaag ttgaaaatgt tgagaaagtg gcattatttt atttcaaagc
      541 atattgaaag tggtgccatc gaacaaacgc tgatttttac gccctatatt gatgaattga
      601 aatatagttt aacgcaaaag tcgaagctct taaacaatat tacagaatta aagttttttc
      661 tatcattttg gaaaaactgg gccgaacttc gatttgttga ttttttagtt ttagtagatg
      721 aaaaaaacga atttgtatcg tatgtacttt taccagatga attaaatgta cgttgcaaaa
      781 tgtatgagaa ctttggagga atggtcagtg agtaaaaatg taaaaaaaat agtgataaca
      841 atcttagcat taataatgac agtaggattg gcgagtgggt ttatcgcacc tataaaagca
      901 agtgcagcca caaataattt cacggttaaa gtggaatatg ttgatgcaga cggagccgag
      961 attgctcctt cggatacatt aactgattat cattatgtat ctacaccaaa agatattcct
     1021 ggctataaat taagagaaat acctcataat gcgacaggca atatcacaga tactgggatt
     1081 atcgtgcgtt acatatatga taaaataatc gatgtaagct acgtagatga aactggcaaa
     1141 gacttattac cagtagtaga aatcatcgat agcgaagcag ctattttaga gacaatacct
     1201 gactatacat ttgtaagaaa agacattagc atagatggct cgcatatcat ttttcgctat
     1261 aaaaagaata tttctaccat tccagagttc gggaaaccga atcaagtcac tgtaaattat
     1321 ctggatgaaa acaatacttc aattgccccg tcattatatt tgagcggact tttcaacgaa
     1381 gcatacaatg ttccgatgaa aaaaattaaa ggttatactt tattaaaata cgattcggaa
     1441 attcttggcg tttttaccga atcaccacaa acaatcaaca tcatttatca aaaaaaagcg
     1501 cctgagcaag caccaagcat ggaaccatta cctgatacag ctgttccaga aaatccgcca
     1561 gtagaaaaag caaaaataaa gaaatcaaaa atagaaacca cagaaaagcg aactatatca
     1621 aaagcaaaaa tcgaaccaaa agcattgaaa ttaaccaaag ttgaacaaaa aaaacaagag
     1681 acgaaagatc gcttgccaaa aacaggtgat agctcggtaa atttattaat tacgtgcctc
     1741 ggaattattg ccatatcgtg tggcgtttac ttactcgtac aacaaagcca gaagcgttgt
     1801 cgtaaagaat agaaaataaa aacaagcaat cctattttcg gattgcttgt ttttttaccc
     1861 ttctcgttta agcatctttg tattagctaa aaacagtgca gcgacgagta aaagaatcgc
     1921 gcctgaaagt attagcgtcg aagttgcgct agagtggtcg acaataataa atcgaataat
     1981 cgctgtgata ccaatataaa tgaaatagcg cagcgggaaa tgaaaatgag attcgaaata
     2041 tttaacaatc agcgcaataa attcaaagta aaggaaaaac gtcaaaatat cttgtgtcat
     2101 ataatagtaa gaaacgtctg tatctaaaaa gaaaatatta ttgaaaatcg taaatgcctc
     2161 tctaattaaa aaagcaacaa gggtaaaacc gaccataata agcgccagat ttagggtgat
     2221 tcgtagcagg atgggaacaa tagaagaaat tttttctaat cgtttcatca gttgcctcct
     2281 ttccaaaaac gatatcgctt ttttagttat tttacactat aatgggaacc atgactattt
     2341 ttaagggggg attgttattc taaaacgctt ttttagttat tataagccgt atcgaacact
     2401 ttttatcatt gattttggtt gcgccgtctt agcagctatt ttggagctgg cttttccagt
     2461 cgcggttaac cacgtgattg atacattact tccaggaaaa gattttgggc tgattattac
     2521 tgcggcactt gccttattat tcttctacat acttaacact tttatgcagt acattgtcac
     2581 ttattttggc catatgcttg gtcttaacat agaaacagat atgcgtagag atttattcag
     2641 tcatttgcaa aaacaaccat ttggctttta cgacaatcag aaaaccggaa aattgatgtc
     2701 acgaatgacg actgacttat ttgaaattgg tgaagtagcg catcatggtc cagaagatat
     2761 ttttatttcg attatgtccc ttttcggtgc atttttctta atgttgaata tcaatgtgaa
     2821 attagcgatt tcgacgttta ttctagtacc gattttgact gtattaattg tttacttcaa
     2881 caaacgaatg accaaagtaa caaccgggat ttttaaagat ttagggaatt ttaatgctgg
     2941 agtggaaaat gcaattagcg gggtgcgtgt cgtgcaagca ttcgccaacg aaccacatga
     3001 aaaagggcgt tttagagtgc tcaaccaagc gtatcgtcag tcaaaattaa tgttctacaa
     3061 agtgatgggc ttgagttttt cgtttaacta ttttctgatg cgattgatta gtttatttgc
     3121 ccttttattc ggagcttatt ttacgattaa tggcgaaata tcatacgggg aatttgtcgg
     3181 atttatcttg ctaacaaacg tgttcattcg accaatcgag aaaatcaaca acgtaatcga
     3241 aagctatcca aaaggctttg cagggtttaa gcgattccta gaagtcatgg atacagaacc
     3301 agcaatccaa gacgaaaaag acgcaaaacc agccaaggcg ttccgcggtg acattgctta
     3361 caaccatgta tcttttgaat atagcgatgg gaaaaatgta ctaaatcata taaatctttc
     3421 tatcaaagcc ggcgaaaccg ttgcctttgt tgggccaagt ggagctggga aaacgacgat
     3481 ttgtaatttg ttaccacgtt tttacgatgt gtcagctgga gagattacaa ttgacggtga
     3541 aaatattaaa cgatttactt taccgtcttt acgagcacaa atcggtgtcg tgcaacaaga
     3601 tgtctttttg ttttccggta cagttcgcga aaatattgcg tacggaaaat tagacgctag
     3661 cgatgaagaa atcgagcatg tcgtgaaact tgcccatctt tccaaggtag tagaagaaat
     3721 gccagatggt cttgacacca tcattggtga gcgcggagtc aaactttctg ggggacaaaa
     3781 acaacggtta gctattgcgc gaatgttttt gaagaaccca ccgattttaa ttttagatga
     3841 agcgacgtca gcacttgata cggaaacaga gcaagtgatt caagcctcgc tagaagagtt
     3901 agcggaagga agaacgactt taattatcgc gcacagactc gcaacgatta agcatgccga
     3961 tcgaattatc gttgtaaatg aaacgggcat cgcagaaact gggacgcata atgagctttt
     4021 agcgcaagat aatggtgcct ataagcgatt atatgatgct cagtttaata cgatttaacg
     4081 agtaaaaact ttcgggtttt aggaaatatt ttactaaaag gaaagcagga attatttggg
     4141 aaccccaaga taattcctgc tttttgtttt ctgcatgata acaagtgtta atgacggaaa
     4201 tagaatttct gttttatatt tttagcagcg caaaagggga aataaagcat ttggacagca
     4261 gaggtgattg ctttagaaaa attgatagac tttatatgga aacgtttgcg taataatgct
     4321 catcgcattc taaatttgga atgaaaatta cacttgaaag gaaatttata atgtcattat
     4381 tcagtttaaa aagaaagaac cattttgttc cactagaaat tcaaaggcaa caatggttca
     4441 aacactttat cgttgcattt atgtctgtat ttatttgtta tctaacggtc tatcttctaa
     4501 ggaataactt taaagcggct cagaca
//
LOCUS       DASEAA010000199         4473 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.199, whole genome shotgun sequence.
ACCESSION   DASEAA010000199 DASEAA010000000
VERSION     DASEAA010000199.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4473)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4473)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4473
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.199"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..808)
                     /locus_tag="U0342_002643"
     CDS             complement(<1..808)
                     /locus_tag="U0342_002643"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465959.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PRD domain-containing protein"
                     /protein_id="HEM2423972.1"
                     /translation="MIIKKILNNNVVIAEGKSGKESVVMGRGLAFQKKLGDEVEVSKI
                     EKTFVMETHELSEKLSELLSEIPLKHLRVADDVVQYAQETLETDLSDNIYLTLTDHIN
                     FAVSRYNQGINLKNALLWEIKRFYHAEYLVGMKALDFIEQEVGIRLDEDEAGFIALHI
                     VNARQDGQQMHMTVAMTQIVQDILSIVTYHYGMVLDETSLNYTRFITHLQYFAQRLLR
                     KEIVDSGDDFLYEQVQIKYPEAFKCTKKIDAYLINTHHTELTRDERVYLTI"
     gene            1076..1486
                     /locus_tag="U0342_002644"
     CDS             1076..1486
                     /locus_tag="U0342_002644"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465960.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2423973.1"
                     /translation="MATRSEQIFINLPVKDLQATVAFFTELGYEFNPQFTDENATQML
                     IGDNIFAMLLKEDFFQTFHKEGIADTTKAREVLITITQDSRQAVDTLVDHALKIGAKP
                     AGETQDYDFMYSRSFLDLDNHLWEIAYLDESALQ"
     gene            complement(1509..2021)
                     /locus_tag="U0342_002645"
     CDS             complement(1509..2021)
                     /locus_tag="U0342_002645"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465961.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ClbS/DfsB family four-helix bundle protein"
                     /protein_id="HEM2423974.1"
                     /translation="MVRPKNKVELLQQSTEKYQQLNDLINSIPKEKQQLTFPFEDRDK
                     NIRDVVIHLHEWHKMALDWYEVGMGGKKPLMPAEGYTWKTTPELNLVIWQKYQETDLA
                     QARELLDETHNKEMVLIAGHSEEELFTKKYYKWTNTTSLGAIFISSTSSHYDWAIKKI
                     RKFKKAAGIK"
     gene            2145..2486
                     /locus_tag="U0342_002646"
     CDS             2145..2486
                     /locus_tag="U0342_002646"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YxeA family protein"
                     /protein_id="HEM2423975.1"
                     /translation="MKKIVILIISLLLLVGIGFGVYYFKNANHIGADVSYVKITTDGE
                     KGKNVSFNYSYTMPAYDEAGKETEVTFSADKNLRKGAYLKLYIKEDKGVTSYEEVPEK
                     EVPSKAAEKLK"
     gene            complement(2518..2901)
                     /locus_tag="U0342_002647"
     CDS             complement(2518..2901)
                     /locus_tag="U0342_002647"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="effector binding domain-containing protein"
                     /protein_id="HEM2423976.1"
                     /translation="MILQENIEIFGKKIRVNNDNFSPIAELWGDVMVDKPAGDIFAVY
                     SNYASDYKGDYDLLVGTKDWDEEKSVLIKAGDYLVFSVDNASHKGVEETWQKIWARDS
                     ELKRAYKTDFEWYHTSGEIDIYISI"
     gene            complement(2957..3853)
                     /locus_tag="U0342_002648"
     CDS             complement(2957..3853)
                     /locus_tag="U0342_002648"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YafY family transcriptional regulator"
                     /protein_id="HEM2423977.1"
                     /translation="MKLERILAILVMILERKVLASELAEKFEVSTRTIYRDMDTLLYA
                     GFPVVALPGKNGGFTMLDTYKLATFTFSEAEKQILLEALEARSEFMLNDSHEILREKI
                     TLLQTEKPTSKHIFFDSATQHRQQIEAEVKRKVAYIQKAFTTNKQLKITYIAMSGAET
                     TREISPQKLNLMDGSWYLEAYCHKRAAIRHFKLTRITSLKEIGKSIMYVEETEHQPAE
                     MKKIVLEFPKNQLGKLLDYFLQEEMETGDDYVRVSFFYDLERNIISFLLMFGSAVKIL
                     EPASLQKDYKSEVEKLYFNLNC"
     gene            complement(3897..4466)
                     /locus_tag="U0342_002649"
     CDS             complement(3897..4466)
                     /locus_tag="U0342_002649"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdcF family protein"
                     /protein_id="HEM2423978.1"
                     /translation="MRSLRKIVIILIIIGFMYLLIVAAFMFGGSRTKPSENADTVLIL
                     GAKVNGTPAVPSLVLQERLDAAVAYLNEYPKAKVIVSGGQGADESATEASVMEEYLVN
                     EGIARKRIETETKSKRTEENIKYSNAKFNLGKTVIVTSDYHMYRALMLAKRQGIDASG
                     LPATSKTFAKYKGMMREVLSITYAWVFDH"
BASE COUNT         1334 a          999 c          659 g         1481 t
ORIGIN      
        1 gaatagtaag gtagacacgc tcgtctctcg ttagttctgt atgatgcgta tttattaaat
       61 aggcatcaat ttttttcgta catttaaaag cttctggata tttaatttgc acttgttcat
      121 ataaaaagtc atcgccggaa tcgacaatct cttttcgaag caaacgttgc gcgaaatact
      181 gtaaatgtgt aataaaacgc gtgtaattca gtgaagtttc atccaatacc ataccataat
      241 gatacgtaac aatacttaaa atatcttgaa caatttgagt catcgctaca gtcatgtgca
      301 tctgttgccc atcttgtcta gcatttacaa tgtgaagcgc gataaaacca gcttcatcct
      361 catctaaacg aattccaact tcttgctcga taaaatctag tgctttcatt cccaccaaat
      421 actctgcgtg ataaaatcgt tttatttccc ataataatgc gtttttcaaa ttaatacctt
      481 gattataccg tgacacagcg aagttaatat gatcagttag ggtcaaataa atattgtcac
      541 ttaaatctgt ttccaaagtt tcttgcgcat actgaaccac gtcatccgca acacgtaaat
      601 gtttcagtgg aatctcacta agtaactcag agagcttttc tgaaagttca tgtgtttcca
      661 ttacgaatgt tttttcaatc ttggatacct ccacctcatc tccaagtttc ttttgaaaag
      721 caagaccacg acccatcact acagactcct tgccactttt accctcggcg attacaacat
      781 tgttattcag tatttttttg ataatcatgc attttcacct ctttcaaaag aaaaaaaccc
      841 aaactaattc caatgctatt aatatcaaaa tagcacttga attaattcag gttttgcccg
      901 ccttagcagt aacaatccta tgcttttctc taacattata gtacaaaaag aaaccgatta
      961 caagtggttt tttgatattc aattttggtt tactttatat cttccctact ttaccacaac
     1021 ttattcattg acatgtagtt ttctgcatgc tatttttggc tggaggtgat aaattatggc
     1081 aacacgctcg gaacaaattt ttattaattt gcctgtaaaa gatttacaag caaccgtcgc
     1141 ttttttcaca gaacttggct acgaattcaa tccgcaattc acagacgaaa atgctaccca
     1201 aatgctcatc ggagacaata ttttcgccat gctcttgaaa gaagatttct tccagacttt
     1261 ccataaagaa ggcatcgctg acacaacaaa agcacgcgaa gtcctcatca ccatcaccca
     1321 agatagccgc caagcagtcg atacgctggt cgatcatgca ctaaaaatcg gcgcaaaacc
     1381 agcaggcgaa acacaagact acgactttat gtatagcaga agttttcttg acttagacaa
     1441 ccatctatgg gaaatcgctt atttagacga atccgcttta caataattac aaaaaaagcc
     1501 gttggaattc atttgattcc agcggctttc ttgaatttcc gtattttttt aatcgcccag
     1561 tcgtaatgac ttgatgtgct tgaaataaat atggcgccta gtgaagttgt attggtccat
     1621 ttataatatt tttttgtaaa tagttcttcc tccgaatgcc ctgcaattaa aaccatttct
     1681 ttgttatggg tttcatccag taattccctt gcttgcgcta aatcagtctc ttggtatttc
     1741 tgccaaatga ccaaatttag ctctggtgtc gttttccacg tataaccttc tgctggcatc
     1801 aatggtttct ttccacccat tccaacttca taccaatcca gcgccatctt atgccattcg
     1861 tgcaaatgta ttacgacatc ccgaatattt ttatcccggt cttcaaatgg aaacgtgagc
     1921 tgttgctttt cttttggaat agagttgatt aaatcgttca attgttggta cttttccgtg
     1981 ctttgttgaa gtaattctac tttgttcttt ggtcttacca tagaaacatt acccctttct
     2041 aacaattatg taagtttaaa ttatcatttt gtcgctttac gcgagggatt tacatgtcat
     2101 ttccctatac aataaaggta acacttttgc aaaggatgat ggatatgaaa aaaatcgtta
     2161 tacttattat aagcttacta ttactcgttg ggattggatt cggtgtatat tactttaaaa
     2221 atgccaatca tataggtgca gacgtatcat atgttaaaat cacaacggac ggcgaaaaag
     2281 gcaaaaacgt aagcttcaac tattcctata caatgccagc atatgatgaa gccgggaaag
     2341 aaacagaagt tactttttct gcagacaaaa atttacgcaa aggtgcttat ttaaaattgt
     2401 atattaaaga agacaaaggc gtaacttcct atgaagaagt cccagaaaaa gaagttccct
     2461 ctaaagcagc agaaaaactt aaataatcac ccaatctcct ccttgcgagg ggatttttca
     2521 tattgaaata tatatatcta tctcgccact cgtatgatac cattcaaaat ctgttttgta
     2581 cgctcgtttt aattcactat ctcgcgccca aatcttctgc caagtttctt ccacgccttt
     2641 atgactcgca ttatctacag aaaaaactaa ataatctcca gctttaatta agacactctt
     2701 ctcttcatcc cagtcttttg ttcctaccaa caaatcatag tcacctttgt aatcacttgc
     2761 ataattacta tataccgcaa aaatatctcc tgcaggctta tctaccatta catcacccca
     2821 aagctctgca atcggactaa aattatcatt gtttacacgt atctttttcc caaaaatctc
     2881 tatattttct tgtaaaatca ttatttgccg cctcctttta aaaccattat agcgaacaaa
     2941 acctgacaac tatctgtcaa caattcaaat taaaataaag tttttccact tcggatttgt
     3001 agtctttttg aagcgatgca ggttctaaaa ttttcacggc acttccaaac atcaataaaa
     3061 acgatattat attgcgctcc aaatcataga aaaagcttac acggacataa tcgtctccag
     3121 tctccatttc ttcttgcaaa aaataatcca acaatttccc gagctgattt ttcggaaatt
     3181 ccaacacaat tttcttcatt tctgcaggct ggtgctccgt ttcttcgacg tacataatcg
     3241 atttacctat ttctttcaaa gaagttattc gcgttaattt aaaatgacga atcgctgctc
     3301 ttttgtggca ataggcttct aaataccaac ttccatccat caagtttaat ttttgcggcg
     3361 aaatctcccg cgttgtttcc gcgccactca tagcgatata cgtaatttta agttgtttat
     3421 ttgtcgtaaa agctttctgg atataggcga cttttcgttt cacttctgct tcaatttgct
     3481 ggcgatgttg tgtcgctgaa tcaaagaaaa tatgcttact agttggtttt tcagtctgta
     3541 atagcgtgat tttttctcgc aaaatctcgt ggctatcatt cagcataaac tccgaacgcg
     3601 cctctaatgc ctccagcaaa atctgttttt ccgcctccga aaaagtaaat gtcgccagct
     3661 tatatgtatc gagcattgtg aacccgccgt tttttcccgg caaagcaaca actggaaatc
     3721 ccgcataaag tagcgtatcc atatcgcgat aaatcgtcct tgtgcttact tcaaattttt
     3781 cagccagctc acttgccagc acttttcgct ccaaaatcat gactagtatt gctaaaatcc
     3841 gttctagttt caccccaaaa cctccaacac cttttagttt attataccat gcactattag
     3901 tgatcaaaaa cccatgcata tgtgatggat aaaacttctc gcatcattcc tttatacttt
     3961 gcaaacgtct ttgatgttgc aggaaggcct gatgcatcaa tcccttgacg ctttgctaac
     4021 attagcgctc tatacatatg ataatcactt gtcacaatca ctgtttttcc taaattaaat
     4081 ttcgcattac tatatttaat attctcttct gttctcttag atttcgtttc cgtttcaatc
     4141 cgctttcttg caattccttc attaaccaaa tattcttcca taacggaagc ttcagtcgca
     4201 ctttcatcag ccccttggcc accactaaca atcactttcg cctttggata ttcgtttaaa
     4261 taagcgactg ccgcatccaa tctttcttgc aaaactaatg aaggaactgc tggggtccca
     4321 ttcacttttg cacctaaaat caacactgta tcagcatttt cacttggttt cgtcctagaa
     4381 ccaccaaaca taaaggccgc gacgattaat aaatacataa aaccaattat gattaaaata
     4441 atgacaattt tcctcagact tctcatctag ttc
//
LOCUS       DASEAA010000200         4463 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.200, whole genome shotgun sequence.
ACCESSION   DASEAA010000200 DASEAA010000000
VERSION     DASEAA010000200.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4463)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4463)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4463
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.200"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..657
                     /locus_tag="U0342_002650"
     CDS             <1..657
                     /locus_tag="U0342_002650"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HEM2423979.1"
                     /translation="IGLAPNKEFNPDPDKKALLIEAAEKADKMMFVNSFNTDDPAAIV
                     WPGKNWEWAVYGENNDFYEKTYLNLPVRERWFYQATLETHMMFMHKVGFGSVYMLGVK
                     DKEGNYLDGGKSYTLKVPTPVPTSIFWSVTVYEMDTRSEIVTEQFMPALNSIKDTFEV
                     DADGNTTLYFGPNPPEDESLPWIQTVPDANWFTYFRIYGPTKPAFDSSWQLDDFEEVK
                     "
     gene            complement(700..1293)
                     /locus_tag="U0342_002651"
     CDS             complement(700..1293)
                     /locus_tag="U0342_002651"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464767.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YdeI family protein"
                     /protein_id="HEM2423980.1"
                     /translation="MAKTELNPKVDAFLSKPSTWQAEFKALREIAITFELEEEFKWGK
                     PCYAINGSNVFLIHGFKNYCALLFMKGALLRDPENILVQQTENVQAARQIRFTNLQEI
                     LDQKEFLKAYIQNAIEVEKAGLEVELKPREETPIPEELLAKFEEMPALQTAFEALTPG
                     RQKAYLLYFAAPKQSKTRVSRIEKYEATILDGLGLND"
     gene            complement(1430..1837)
                     /locus_tag="U0342_002652"
     CDS             complement(1430..1837)
                     /locus_tag="U0342_002652"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464768.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glyoxalase/bleomycin resistance/extradiol
                     dioxygenase family protein"
                     /protein_id="HEM2423981.1"
                     /translation="MTLNVYLNFRTQSRDAIAFYEEIFGTKCTDLMTYGEIESREEPI
                     EDSLKDLVMNASLVMDGVKVMFSDVPKSMPLTFGDNITLVIDTSDEIKLTKQFHQLAE
                     GGNIVMPLGKTFWSEKYGQVTDKFGVGWQLNLS"
     gene            2002..2601
                     /locus_tag="U0342_002653"
     CDS             2002..2601
                     /locus_tag="U0342_002653"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464769.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="histidine phosphatase family protein"
                     /protein_id="HEM2423982.1"
                     /translation="MKKTLYLIRHGQTLFNQRKKIQGFCDAPLTELGIKQAKIAASYF
                     KENNITFDQAYSSTSERASDTLELITDKSYQRLKGLKEWNFGTFEGESEDLNPPLPYG
                     DFFAAYGGEREVDFRDRLVATMERIMSQDNHDTVLAVSHGAACAQFARYWEKTSKIGK
                     VTGLKNCCILKFEYENGRFTLVNFINHDFENGTHIESTK"
     gene            complement(2633..2893)
                     /locus_tag="U0342_002654"
     CDS             complement(2633..2893)
                     /locus_tag="U0342_002654"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2423983.1"
                     /translation="MNLDDLKNKVTESLPLENLGTLTEEATNKASELGEQASNVTENL
                     QNEATNLTENLQDKTSGLTENLQDTANELTGGFLDKIKNLFQ"
     gene            3017..4429
                     /gene="dbpA"
                     /locus_tag="U0342_002655"
     CDS             3017..4429
                     /gene="dbpA"
                     /locus_tag="U0342_002655"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464771.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent RNA helicase DbpA"
                     /protein_id="HEM2423984.1"
                     /translation="MNNLKLSEEIKRAINELGYTEATPVQKAVIPVALTGEDIVAKSQ
                     TGSGKTAAFAIPIAEQIEWEENKPQALIIVPTRELAMQVKTECTNIGRFKRVKAAAIY
                     GQSPFAKQKLELSQKNHIVVGTPGRLLDHIEKGSLNVDKVAHLVLDEVDEMLSMGFID
                     QVEDILSRLPKQRQNLFFSATMPEEMQDLIKRYQDDPMVIEMASEKTNPIFHVEMQTD
                     NKEKTLKDVLITENPDSAIIFCNTKNQVDELTDLLDVKVSKIHGGLRQEDRFRAMDDF
                     KSGKSRFLIATDVAGRGIDVDNVSLVINYDLPIEKENYVHRIGRTGRAGKSGKAISFV
                     KTNENPLLRDIEEMLDVTIEKKRKPTVIEVKANEEAFRKKQQKRPTIKKARGEKLNKN
                     IMKLYFNGGKKKKIRAVDFVGTISKLEGITAEDIGIITIEDHVSFVEILNGKGPAVLE
                     MMRSRKVKGRRLKVNEARKR"
BASE COUNT         1476 a          778 c          880 g         1329 t
ORIGIN      
        1 attggtttag ctccaaataa agaatttaat cctgatccag ataaaaaagc tttattaata
       61 gaagctgccg agaaagcaga caaaatgatg tttgtgaatt cctttaatac agatgatcca
      121 gctgctattg tttggccagg aaagaactgg gaatgggctg tctatggtga gaataatgac
      181 ttctatgaaa aaacgtattt aaatcttccg gtaagagagc gttggttcta tcaagcgaca
      241 ctcgaaacac atatgatgtt tatgcataaa gtcggatttg gttccgttta tatgcttgga
      301 gtgaaagata aagaaggaaa ctatctggat gggggcaaaa gttatacatt aaaagtgcca
      361 acaccagtgc caacgagcat tttctggtcg gtaacggttt atgagatgga tactcgttcg
      421 gaaattgtca cagagcaatt tatgcctgcg cttaactcca tcaaagatac gtttgaagta
      481 gatgctgacg gtaatacaac actttacttt gggccaaatc ctccagaaga tgagtcgctt
      541 ccatggattc aaactgttcc agatgccaat tggttcacgt atttccgtat ttacggacca
      601 accaaaccag cctttgatag cagttggcaa ttagatgatt ttgaagaagt aaaataaata
      661 aaaaagcgca accttcacgc agggtgcgct ttttttcgat taatcgttta atcctaatcc
      721 atctaaaatc gttgcttcgt atttttcaat gcgcgaaaca cgcgtttttg attgctttgg
      781 agccgcaaaa tagagcaagt aagctttttg acgaccagga gttaaggctt caaaagctgt
      841 ttgtagcgca ggcatttctt caaatttagc gagtaattct tctggaatag gcgtttcttc
      901 ccttggttta agttccactt ctaacccagc tttttctact tcaattgcat tttgaatata
      961 cgcctttaga aattcttttt gatcaagaat ttcctgtaaa tttgtgaagc ggatttgtct
     1021 ggcagcttgc acattttctg tttgctgaac taaaatgttt tccggatcac ggagtagtgc
     1081 gcctttcata aagagtagtg cacagtagtt tttaaaacca tgaattaaga aaacgttgct
     1141 gccattaata gcgtaacaag gtttccccca tttgaattct tcttctagtt caaacgtgat
     1201 tgctatttct cttaatgctt tgaattcagc ttgccaagtg gatggtttac ttagaaacgc
     1261 atctacttta ggatttaatt cggtttttgc cataaagaat tcctcttttc cacacttttt
     1321 ctttgatacg tgttatttta acttaataag aaaggccttg caaatttggt cggcctacta
     1381 aaaatggact taaagaaaga acctgagttt tatcccagat tctcttaatt taagataaat
     1441 taagctgcca accgacgccg aatttatccg tcacttgccc atatttttcc gaccagaatg
     1501 ttttgccaag tggcatgaca atattgccac cttctgcaag ctgatggaat tgtttggtta
     1561 attttatttc gtcagatgta tcaattacta gtgttatatt gtctccgaat gtgagcggca
     1621 tagactttgg aacatctgaa aacataacct ttactccgtc cattactaaa ctagcattca
     1681 tcactaaatc tttgagcgaa tcttctatag gttcttctct ggactcgatt tccccatatg
     1741 tcatcaaatc tgtacacttt gttccaaaaa tttcttcata aaacgcgata gcatctctgg
     1801 attgtgttct aaaattcaag taaacattca acgtcatttg aattcctcct cgatttttat
     1861 tcgctaaagt tctattcatt ttggtgtttt tattatagca gatactgcgt gaaagaggaa
     1921 aaattaagaa gataaatact tgacttggag ctactccagg gtgataaact aaggagaaga
     1981 tatagattcg gaggaattta gatgaaaaag acattgtatt taatacgcca tggtcaaaca
     2041 ttatttaatc aacgtaaaaa aattcaaggt ttttgcgatg caccacttac cgaactcggg
     2101 attaaacaag caaaaatcgc tgctagttac tttaaagaaa acaatataac attcgatcaa
     2161 gcttacagtt ccacatcaga gcgcgcatct gacacgttag agctgattac ggacaaaagc
     2221 tatcaacggt tgaaaggttt gaaagaatgg aattttggta cttttgaagg cgagagcgaa
     2281 gacctaaatc caccgctacc atatggagat ttttttgctg cgtatggggg agagcgagaa
     2341 gtggatttca gagatcgttt agtagcaaca atggaacgta tcatgagcca agataatcat
     2401 gatactgtcc ttgccgtttc tcacggagct gcctgtgccc aatttgctag atattgggaa
     2461 aaaacaagca aaattggcaa agtaacagga ctgaagaatt gctgcatttt aaagtttgaa
     2521 tatgaaaatg gcagatttac tttagttaat tttattaatc atgattttga gaatggaacg
     2581 catatagaaa gcactaaata aaaaagcact cgtcattgag tgctttttcg cttcattgaa
     2641 acaaattctt tattttatcc aaaaatccac cagttaactc attcgcagta tcttgcaagt
     2701 tttccgtaag tccacttgtt ttatcttgta gattttctgt taggttcgtc gcttcattct
     2761 gtaaattttc tgtgacatta cttgcttgtt caccaagctc agatgctttg tttgttgcct
     2821 cttctgtcag tgttcctagg ttttccaggg gcagggactc ggtaacttta ttcttcaaat
     2881 catctaaatt catcttttcc tccttatttt gggggcttag agttcattct aaaggaagga
     2941 gggataaagt acaaacaatt cgttccatca tttgtgaaaa aatatggtat gatgatatga
     3001 ggaaatgagg actgacatga ataatttaaa attaagtgaa gaaattaaaa gagcgattaa
     3061 tgaactagga tatacagaag caacacccgt tcaaaaagcg gtaattccag ttgccttaac
     3121 aggagaagat attgttgcta aatcacaaac tggtagtggg aaaacagcag cattcgctat
     3181 tcccattgca gaacagattg aatgggaaga aaataagcca caagcactaa tcatcgttcc
     3241 aacacgagaa cttgcaatgc aagtcaagac agaatgtacg aatattggac gatttaaacg
     3301 tgtcaaagct gcagcaatat acggacaatc accatttgcg aaacaaaaat tagaactaag
     3361 ccaaaaaaat catatcgtcg ttgggacgcc tggtcgcctg ctggatcata ttgaaaaagg
     3421 atcactgaat gtcgacaagg ttgcccattt agttttagat gaagtagatg aaatgttaag
     3481 catgggattt attgatcaag tcgaagatat tcttagccgt ttaccaaaac agcgccaaaa
     3541 tctatttttc tcagcaacta tgccagaaga aatgcaagat ttgattaaac gctaccaaga
     3601 tgatccaatg gtaatcgaaa tggcatcgga aaaaacaaac cctatcttcc acgtggagat
     3661 gcaaacagat aataaagaaa aaacgctaaa agatgttttg attacagaaa atccggatag
     3721 cgcaataata ttttgcaata cgaaaaatca agtcgatgaa ctcaccgatt tacttgatgt
     3781 aaaagttagt aaaattcatg ggggtttaag acaagaagac cgtttccgag caatggatga
     3841 ttttaaaagt ggcaaatccc gtttcttaat tgcgacagat gtggcagggc gcggaataga
     3901 tgtggataat gtatcgttag tcattaacta cgatttacca attgaaaaag aaaattatgt
     3961 acatcgtatc ggtcgtactg gtcgcgctgg caaaagtggt aaagctatta gtttcgtgaa
     4021 aacaaatgaa aatccacttt tgcgtgacat agaagaaatg ctcgatgtta caatcgaaaa
     4081 aaaacgtaaa ccgacagtga tagaagtgaa agctaacgaa gaagctttcc gcaaaaaaca
     4141 acaaaagcgc ccaacaatca aaaaagctcg tggggaaaaa ttaaataaaa acattatgaa
     4201 actgtatttt aatggtggaa aaaagaaaaa aattcgtgca gtagattttg ttggaactat
     4261 ttctaaatta gaaggaatta cggccgaaga tatcggaatt attacgattg aagaccatgt
     4321 ttcttttgtt gaaattttaa atggaaaagg tccggcagta ctggaaatga tgcgctctcg
     4381 taaagtaaaa ggtagacgcc tgaaagtaaa cgaggccaga aaacgataaa ttaaagaaaa
     4441 gaaggtccaa acaatggaaa ggc
//
LOCUS       DASEAA010000201         4452 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.201, whole genome shotgun sequence.
ACCESSION   DASEAA010000201 DASEAA010000000
VERSION     DASEAA010000201.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4452)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4452)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4452
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.201"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            148..900
                     /locus_tag="U0342_002656"
     CDS             148..900
                     /locus_tag="U0342_002656"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465860.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DeoR/GlpR transcriptional regulator"
                     /protein_id="HEM2423985.1"
                     /translation="MLNAERKQLIMESIEKLGVIKLQELVEGLATSESTIRRDLIELE
                     EQGLIQRVHGGAKLVKLHNQEPSMNEKSFKNIQSKKVIAVYCASLVEENDCIYLDAGS
                     TTLELITHLANRNITVVTNGLTHIEELVRQNIDAYLLGGKMKVHTKAIIGAVALDNIQ
                     NYHFDKAFIGTNAMHPEHGYTTPDMEEAFVKRAAKERADRVFVVADHTKFNEVNFSKM
                     FSIEEATIVTDYIPSAVKESFIQKTKIIEVEK"
     gene            897..1820
                     /gene="pfkB"
                     /locus_tag="U0342_002657"
     CDS             897..1820
                     /gene="pfkB"
                     /locus_tag="U0342_002657"
                     /EC_number="2.7.1.56"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="1-phosphofructokinase"
                     /protein_id="HEM2423986.1"
                     /translation="MIYTITLNPSIDYIVQIDQLNLGGLNRMKQDYKLPGGKGINVSR
                     VLNQLNVPSLATGFLGGFTGNFIKDWLQNEGVKTGFVTVKDDTRINIKLKHGEETEIN
                     GLGPAISEKEINGFLKVMDKVTANDIVILSGSVPPSLGNDFYNKIIQICKEKKAEFMI
                     DTTGQELLDALPNHPILIKPNHHELADLFGVKLGSVEELIPYGKKCLELGAQHVIVSM
                     AGDGALLFTGEDVYFADALKGELKNSVGAGDSMIAGFVGTFDKTRDPVKAFAAGVATG
                     GATAFSTDLAQKELIDELLPQVKITKITGRN"
     gene            1822..3720
                     /locus_tag="U0342_002658"
     CDS             1822..3720
                     /locus_tag="U0342_002658"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS sugar transporter subunit IIA"
                     /protein_id="HEM2423987.1"
                     /translation="MRITDLLSKDVMIMSLQATTKEAAIDEMIASLKSNGKINDEVLF
                     KEAIMNREAQSSTGVGEGIAMPHAKTKAVNEPTVVFAKSEKGLDYDALDGQPAHLFFM
                     IAAPDGANATHLETLAALSRLLVHPAFVQSLRDAKTPEEVINLFNNEQEDAEETVVAP
                     TSTNETGKSVVAVTACPTGIAHTYMAAEKLQETANKLGVRIKVETNGSRGVENRLTDK
                     EIAEADGVIIAADVQVDMPRFDGKHLIAKPVAAGIHKPEELIKEAISGNAPIYKAEEG
                     SQATESADGLSIGQQIYKHLMSGVSHMLPFVIGGGIAIAIAFMLDQMLGVPQDQLAKL
                     GSYNEIPALLKQIGDVAFGFMLPVFAGYIAYSISDRPGLVAGFVAGGVASVGGAGFLG
                     ALVGGFLAGYAVELIKLALKKLPKTLDGIKVVLFYPVLSVLIVGLLMLLLNVPMSALN
                     TWLNDFLNSLSGTNAVILGLLLGAMMAADLGGPINKAAYIFATGTLAASVATGGSAIM
                     AATMAAGMVPPLATFVATLIFRNKFTAQERDAGLTNSILGASFITEGAIPFAAADPLR
                     MIPSFIAGSAITGAVVMFLNIKVLAPHGGVFVIFLVSQPWFYIIAIIIGTLISAGLIG
                     VLRKKPTV"
     gene            3826..4173
                     /locus_tag="U0342_002659"
     CDS             3826..4173
                     /locus_tag="U0342_002659"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465857.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2423988.1"
                     /translation="MEFGEKLIHLRKKNRLTQKQLAAKIGTTASTISKYENDNHRPPI
                     FILAKLAEILGTTTDFLLDDVAGLREKNSVNAFPLIGNPELEKWYLELPYTYSEDELL
                     MLKRIADAIENKK"
     gene            complement(4228..>4452)
                     /locus_tag="U0342_002660"
     CDS             complement(4228..>4452)
                     /locus_tag="U0342_002660"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931629.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComK"
                     /protein_id="HEM2423989.1"
                     /translation="TFEIDMSLASFNNQIARTSMLHMKFSQKMRIMESNFPSMNRFFP
                     PTTLAAEPRRYYSTMLPNNEDPNEPQDPEQ"
BASE COUNT         1518 a          713 c          932 g         1289 t
ORIGIN      
        1 aaaacgctga atgaataatt gtgaaggatt atggcgatat acatggtata atatgaatga
       61 atttgaaaat gtgtgattgt ttttgaatga aaacggttga ttttgaaagg aaaagatggt
      121 aaactgactt tggatggagg agtaataatg ttaaatgcag agcgtaaaca acttattatg
      181 gagagtattg agaaacttgg tgtgattaaa ttacaagaat tagttgaagg tcttgctacc
      241 tcagagtcaa ccattcgccg tgatttaatc gagttagaag aacaaggatt aattcagcgc
      301 gtacacggcg gggcgaaact tgtaaaactt cataatcaag aaccaagtat gaatgaaaaa
      361 tcattcaaaa acattcaaag taaaaaagta attgctgtat attgtgcaag cctagtggaa
      421 gaaaatgatt gtatctattt agatgcagga tccacaacat tagaattaat tactcaccta
      481 gcaaatcgaa atatcacagt agtgacaaat ggattaaccc atattgaaga gcttgttcgt
      541 caaaatatag atgcttatct tttaggcggc aaaatgaaag tgcatacaaa agcaattatt
      601 ggtgcagttg ccttagataa cattcaaaac tatcattttg ataaagcttt cattggtacc
      661 aacgcgatgc atccggagca tggctacaca acacctgata tggaagaggc atttgtaaaa
      721 cgtgctgcaa aagaacgtgc tgatcgcgtt tttgttgtag cagaccatac aaaattcaat
      781 gaagtgaatt tttcaaaaat gttttcaata gaagaagcaa ctattgtgac agattacatt
      841 ccttctgcag taaaagaatc ctttatccaa aaaactaaaa taatcgaggt agaaaaatga
      901 tttatacaat tactttaaac ccatcaattg attatattgt acaaatcgac caattaaatc
      961 ttggcggtct taatcgcatg aagcaagatt ataaactacc tggtggcaaa ggaattaatg
     1021 tcagcagagt tttaaatcaa ttaaatgtac caagtcttgc tacaggattt ttaggtggat
     1081 ttacaggcaa ttttatcaaa gactggctac aaaacgaagg tgtgaaaact ggctttgtaa
     1141 cagtgaaaga tgacactcgt attaatatca aactaaaaca cggagaagaa acagaaatta
     1201 atggtctagg gccagctatt tctgaaaaag aaatcaatgg atttttgaaa gtgatggata
     1261 aagtaactgc taacgatatt gttattttat ctggtagtgt gcctccttca cttggaaatg
     1321 atttttacaa taaaataatt caaatttgca aagaaaaaaa agctgaattt atgattgata
     1381 caactggtca agaactgcta gatgcattac caaaccaccc gattctaatt aaaccaaatc
     1441 accacgaact agcagaccta tttggcgtga aacttggtag cgtagaagaa cttatcccat
     1501 acgggaaaaa atgtttagaa ttaggcgcgc aacatgtaat cgtgtccatg gctggtgacg
     1561 gagcgcttct atttacagga gaagatgttt acttcgccga tgcattaaaa ggggaactga
     1621 aaaattccgt aggtgctgga gactcaatga ttgcaggctt tgttgggact tttgataaaa
     1681 cgagagatcc cgttaaagct tttgctgcag gagttgcaac aggtggagct actgcatttt
     1741 caacagattt agcccaaaaa gaactaatag atgaactatt accgcaagtg aagataacca
     1801 aaataacagg gaggaactaa aatgagaatc actgatttat taagcaaaga tgttatgatt
     1861 atgtcattac aggcaacgac aaaagaagct gccatcgatg aaatgattgc ttcgttaaag
     1921 agcaacggga aaattaatga tgaggtgctg tttaaagaag ctataatgaa ccgtgaagca
     1981 cagagttcta ctggtgtagg tgaaggaatt gcaatgcctc acgcgaaaac aaaagcagta
     2041 aatgaaccaa ctgttgtttt tgctaagagt gaaaaaggat tggattatga tgctttagat
     2101 ggtcagccag cacacttatt ctttatgatt gctgctccag atggcgctaa tgcaactcat
     2161 ttagaaactt tagcagctct ttctagatta ttggttcatc cagcgtttgt gcaatcgtta
     2221 agagatgcta aaactccaga ggaagtaatc aatttattca acaatgaaca agaagacgca
     2281 gaagaaacag tcgttgctcc aacctcaacc aatgaaactg gtaaatcagt cgtagcagtt
     2341 acagcatgtc caacaggaat tgcacatact tatatggctg cagaaaaatt acaagaaact
     2401 gctaataaat taggtgtacg aatcaaagtt gagacaaatg gctctagagg cgttgaaaac
     2461 cgtttaacag ataaagaaat tgcagaagct gatggagtta ttattgcagc tgacgtacaa
     2521 gtagatatgc ctcgttttga cgggaagcat ttaattgcta aaccggttgc agcgggaatt
     2581 cataaaccag aagaactaat taaagaagca atttcaggca atgctccaat ttataaagca
     2641 gaggaaggta gtcaagctac ggagagcgca gacggacttt ctatcggtca acaaatttat
     2701 aaacatttaa tgagcggtgt ttctcacatg ttgccgtttg taattggtgg aggtatcgca
     2761 atcgccatcg cgtttatgct tgatcaaatg ttaggtgttc ctcaagatca actcgcaaaa
     2821 cttggttcat ataacgaaat cccagcacta ttaaaacaaa tcggtgatgt tgcattcggc
     2881 ttcatgcttc cagtattcgc tggatatatt gcctacagta tatcggatag accaggactt
     2941 gtagcaggtt ttgttgcagg tggagtagca tctgttggtg gtgcaggctt ccttggagca
     3001 cttgttggtg gtttccttgc aggttatgca gtagagttaa ttaaactagc acttaaaaag
     3061 ttaccaaaaa cattagacgg tatcaaagta gttttattct atccagtttt atcggtgtta
     3121 attgtcggac ttttaatgtt gctattaaat gtaccaatga gcgcattgaa cacttggttg
     3181 aatgacttct tgaatagttt aagcggaacg aacgcagtta ttttaggatt actgttaggt
     3241 gcaatgatgg cagcggattt aggtggacca attaataaag ctgcttatat atttgcaacg
     3301 ggtacactcg cagctagtgt agcaacaggc ggtagcgcaa tcatggcagc aacaatggct
     3361 gctggcatgg taccaccact agcaacgttt gtagcaactc ttatttttag aaataaattt
     3421 acagctcaag aacgtgatgc aggcttaact aactctattt tgggtgcttc attcattact
     3481 gaaggagcta ttccatttgc agcggccgat ccacttcgaa tgattccgag ttttattgcc
     3541 ggaagtgcta tcacaggtgc ggtagtaatg ttcttaaaca ttaaagtatt agcacctcac
     3601 ggaggagttt ttgttatctt ccttgtatcc caaccttggt tctatattat tgcaattatt
     3661 attggaacat taatcagcgc aggattaatt ggtgttctac gtaagaaacc aactgtataa
     3721 aatatggaaa tcgtcttttg aaactaaaaa ggcgatttct ttttagtaat ttctcgaatt
     3781 atttccgaaa aattgctata ctggaagtga agtgaggtgg gcgtattgga atttggagaa
     3841 aaattaattc atttaagaaa gaaaaatagg ttaacacaaa aacaactggc tgcgaaaatc
     3901 gggacaactg catccacaat aagcaagtat gaaaatgata accaccgacc gccaattttt
     3961 attttggcta aattagcaga aattcttgga acaacaaccg attttttatt agatgatgta
     4021 gctggtttgc gagaaaagaa ttcggtaaac gcctttcctt taattggaaa tcctgaactc
     4081 gagaaatggt atttagaatt accttataca tactcagagg atgagttatt aatgttaaaa
     4141 cgaattgcag atgcgattga aaataaaaaa taattttaag gagaagccag ctactattat
     4201 gtaactggct tttatttggt tttaaagtta ctgctcagga tcttgaggct cattaggatc
     4261 ttcgttattt ggaagcatgg tgctgtaata acgtctaggt tcagcagcaa gagtggttgg
     4321 tgggaaaaac ctattcattg aaggaaaatt actctccatt atacgcattt tttgagaaaa
     4381 tttcatatgt aacatggagg ttctagcaat ctgattatta aaagatgcta aagacatatc
     4441 aatctcaaag gt
//
LOCUS       DASEAA010000202         4299 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.202, whole genome shotgun sequence.
ACCESSION   DASEAA010000202 DASEAA010000000
VERSION     DASEAA010000202.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4299)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4299)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4299
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.202"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1367
                     /locus_tag="U0342_002661"
     CDS             <1..1367
                     /locus_tag="U0342_002661"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2423990.1"
                     /translation="NNISDVSPLADFASTKIKVFDLDDNHITDLSSLTNNKMPNLQRL
                     YVRSQSFYVETPVVTSSKYEFSLQPSVFGITKPVKITATNPKATIDPITSKITYSAEV
                     MAKRPKYSSNRVSGVTYSWDEDIPFNGSNNLVEYNGTFYKPLTYVEPPQVVSYNSGLT
                     YELGTPLTEQQFLNDLNVITDQPTTITTNFDKVLKDVNSVGFYPVTIKASNIEGNTEF
                     TTSVLIKYKPPVITADAEYTYLVGDKVNATQFRADVNATLTGEGTLRDDFIYKVRLNT
                     AGDYVVTLSSPKSGYYEQDAIPITVIVHVKELLELQIPDEFRMDIDANADSVPISDKK
                     QTLTCYGSSGKAELEVIDRRTVRQGWTITGAMTPFTNSGGDILQTSLKYQSKSPSSSP
                     IYLNTTNQPIEKKQSAVTDPKYDSTIVNLEDSLSMEIEPNDALVNDSYESKITWTLED
                     APRP"
     gene            1407..1703
                     /locus_tag="U0342_002662"
     CDS             1407..1703
                     /locus_tag="U0342_002662"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464078.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2423991.1"
                     /translation="MKKMGFILICCLFVCASPFYVKANTDKATSKAGVIFTHDPRKPR
                     TGTDDRSGTFPTKVPPKRLPKTGDTTDFYLVLLGFGFILIAKKGYFKEVREEIR"
     gene            1747..2589
                     /locus_tag="U0342_002663"
     CDS             1747..2589
                     /locus_tag="U0342_002663"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464079.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WxL domain-containing protein"
                     /protein_id="HEM2423992.1"
                     /translation="MTSRTVKVTTASLLALGLIVAPVLSGDFASAATSVTKDSKGIVK
                     FDKSTTPDPDPVNPDPVDPDPVIPDPTDPPVGTDGLWILAVSDWDFGTHNVSSLSSGA
                     LNVHAADDTISTYVDANGNGQQDLPGEVSVTKKVTPYAQISDVRGTNTGWTLSVTGSA
                     FKDSSTPAKTIPGAELTIPKSTVSSATSTAQAPTGYDSVTISMTGGAAVPVMAAKDMQ
                     TATPTNFNDDQGMGTWTDSFGSQAVSATDTSKPKLSIPKNVVVADGTYQSTLTWTLSD
                     TPAV"
     gene            2665..3696
                     /locus_tag="U0342_002664"
     CDS             2665..3696
                     /locus_tag="U0342_002664"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464080.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF916 and DUF3324 domain-containing protein"
                     /protein_id="HEM2423993.1"
                     /translation="MKKICAIIFACVLAILCFPGQQAYATENSSFSVKAILPDNQASS
                     VTYFDLQMKPKQKQSLNVEITNQSKEEITVNCVANTAVTNEMGYVDYSIPNTKPDKTL
                     KYPFADMVKESVSEVTLKPNETKIWTAAIQMPAENYDGIILGGLHFQEKKEEDKEKDS
                     SENDVQIKNEYAYVIGVKLTEKTTVVKPELELNQIKPATRNYRNVVEMNLQNTKATLV
                     GGLAVDAKIYKKGSEKVLHESKRTDLSMAPNSNFNYSVDWENQELKPGKYKVHLVAKN
                     KEDKWEWTKEFTISSDQAKKANKVALGLEKDYTWMYIVGGVLLFILLIIATYFVGKRA
                     AKKKQENEK"
     gene            complement(3753..>4299)
                     /locus_tag="U0342_002665"
     CDS             complement(3753..>4299)
                     /locus_tag="U0342_002665"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464081.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CBS domain-containing protein"
                     /protein_id="HEM2423994.1"
                     /translation="ESGYRCVPVLDEKGEKFLGNIYKMHIYKHAANGGSLSDPVMSLI
                     KNATKHICVNASFFEVFFTIKELPYIAVLNEQGNFYGILTHGKLLGLLQDGWNVKTTS
                     YVLTIATGEVQGALTKITKIIDRYSSISSLITLDNQTEDFIRRVLVSLPVGVTEDKKN
                     EIVSHLERKGLRVVETEKIEK"
BASE COUNT         1472 a          803 c          842 g         1182 t
ORIGIN      
        1 gaaataatat atcagatgtt tcaccgcttg ctgattttgc cagtactaaa ataaaggtgt
       61 ttgatttgga tgataatcat attactgatt tatctagtct tacaaataac aaaatgccta
      121 atttacagcg attatatgtt aggagccaaa gtttctatgt ggaaacgccg gtagttactt
      181 ctagtaagta tgaattttct ttacaaccat ctgtttttgg aataaccaag ccggttaaaa
      241 taactgctac taatcccaaa gcaactattg atcctattac ttctaaaatt acatattcag
      301 cagaagtaat ggccaaaaga ccgaagtata gctctaatcg ggtttcagga gttacctatt
      361 cgtgggacga ggacattccg tttaatggta gcaataatct agttgaatac aatggtacgt
      421 tttacaagcc attaacttat gttgaaccgc cccaagttgt gtcttacaat tcaggcctta
      481 cttatgagct aggtacacca cttacggaac aacaatttct aaacgatctc aatgtgataa
      541 cagatcaacc aacaacgatt actacaaatt ttgataaggt gctaaaagat gtgaattctg
      601 taggctttta ccctgtcact atcaaagctt ctaacataga aggaaatacg gagttcacta
      661 cttcggtact gattaagtat aagccaccag ttataaccgc agatgcagaa tacacctatt
      721 tagtaggaga taaagtgaat gctactcaat ttcgagcaga tgtaaatgca actttgacag
      781 gtgaaggaac actaagagat gactttatat ataaagtaag acttaatacg gcgggagatt
      841 atgttgtaac tctttcttca cctaaaagtg gctactatga gcaagatgca atacctatta
      901 cagtcattgt tcacgtaaaa gaacttttgg aattgcaaat cccagatgaa tttcgaatgg
      961 atatagatgc aaatgcagat tccgtaccaa tttcagataa gaaacaaaca cttacatgct
     1021 atggttcgtc tggaaaggct gagttagagg tgatcgatag acgaactgtg cggcaaggct
     1081 ggacgataac gggtgcgatg acgccattta ccaatagcgg cggcgatata ctacaaactt
     1141 cgctaaaata tcaaagcaaa tcgccttcca gtagtccgat ttatttaaat acgacgaatc
     1201 aacctatcga aaagaaacaa tcagctgtga cagacccaaa atatgattct accatcgtca
     1261 atctggaaga cagtttatcc atggaaattg agccaaatga tgcgctagtg aacgattcct
     1321 atgagtcgaa aatcacctgg acactagaag atgcgcctcg accataataa gcaatcagct
     1381 acatcaaaca aaaggagcta tctaaattga aaaaaatggg attcatttta atctgttgtt
     1441 tatttgtgtg cgcctcgccg ttttatgtaa aagcgaatac ggataaggcg acaagtaaag
     1501 cgggagtgat tttcacgcat gacccccgaa aaccaagaac tggaacagat gacagaagcg
     1561 gcacttttcc gaccaaagtt cctccaaaaa gactgccgaa aacaggagat acaactgatt
     1621 tttatcttgt tttactaggg tttggtttca ttttaatcgc gaaaaaaggc tattttaagg
     1681 aggtgaggga agaaatccgg tgaaactgca cgacaaaaaa aggatatcag aaagaggaga
     1741 ataataatga caagtagaac agtaaaagta acaacagcga gtttattagc attaggtttg
     1801 attgtggcac cagtactttc tggagatttt gcttcagctg ccacttccgt aacgaaagat
     1861 tccaaaggga ttgtaaaatt tgataaaagc accacgccag atccggatcc agtaaatcca
     1921 gatccagttg atccagaccc agttattccg gatccaactg atccacccgt aggtacagac
     1981 ggactttgga ttttagccgt atctgactgg gattttggta cgcataacgt ttctagctta
     2041 tcttcaggtg cgttaaatgt acatgcagcg gatgatacga tttctactta tgtagacgca
     2101 aatggtaatg gacaacaaga tttgccaggg gaagtttcag taactaagaa agtaactcct
     2161 tatgcacaaa ttagtgatgt tcgtggtact aatacaggtt ggacactttc cgtgacgggt
     2221 agtgctttca aagattcttc tacaccagca aaaacgattc caggtgcaga gctaactatt
     2281 cccaaatcga ctgttagttc agcgacttct accgctcaag cgccaactgg atatgatagc
     2341 gtaacaattt caatgactgg cggcgcagca gttccagtaa tggcagctaa agatatgcaa
     2401 acagctacac cgaccaactt taacgatgac caggggatgg gcacatggac agatagcttt
     2461 ggttctcaag cagtgtccgc aacagatact tccaaaccaa aattatccat tccgaaaaac
     2521 gtcgttgtcg ctgatggaac ttatcaaagt acattaactt ggactttaag cgatacacca
     2581 gcagtttaac atttttaaga gaaaacttca tttttggatg ttgttttctc tttttacatt
     2641 gagcaattag gaggaaagag acacttgaaa aaaatatgcg ctatcatctt tgcttgtgta
     2701 ctagctattc tttgttttcc aggacagcag gcgtacgcaa cagaaaatag tagtttttcc
     2761 gtaaaagcaa ttctccctga caatcaggca tctagtgtga cctatttcga tttacaaatg
     2821 aaaccaaagc aaaaacaaag tttaaatgta gaaattacga accagagtaa agaagaaatc
     2881 accgttaatt gcgttgccaa tacagccgtt accaatgaga tgggctacgt ggattattcc
     2941 ataccaaata cgaaaccaga taaaacgtta aaatacccct ttgcagatat ggtgaaggaa
     3001 agtgtctctg aggttacact taagccaaac gaaaccaaaa tttggacagc ggctattcaa
     3061 atgcccgctg aaaactacga cggtattatt ttaggaggat tacattttca agaaaagaaa
     3121 gaggaggata aagaaaaaga ctccagcgaa aacgatgtcc aaattaaaaa tgaatacgcc
     3181 tacgtcattg gtgtcaaatt aaccgaaaaa acgaccgtcg taaagccaga attagaatta
     3241 aatcaaatta aaccagcgac cagaaattac cgaaatgtag tagaaatgaa tttgcaaaat
     3301 acaaaagcga ccttagttgg tggactggcc gtggatgcaa aaatatataa gaaaggcagc
     3361 gaaaaagttt tacatgaatc aaaacgcaca gatttatcca tggcgccaaa ttccaatttt
     3421 aattatagtg tagattggga aaatcaagag ttaaaaccag gtaaatataa agtgcattta
     3481 gttgctaaga acaaagaaga taaatgggag tggacaaaag aattcactat ctcttctgat
     3541 caagcaaaaa aagccaataa agtagctctt ggactggaga aagactacac gtggatgtat
     3601 atcgtaggtg gagtattgct tttcattctt cttattatcg caacttactt tgtcggcaaa
     3661 cgagcagcaa agaaaaaaca ggaaaatgaa aaatagccta acgaaaaaac agcttgaaaa
     3721 tgagaattta cctcgttttc aagctgtttt tattattttt cgattttttc tgtttctacg
     3781 acacgaagtc ctttgcgttc taagtgggaa acaatttcgt ttttcttatc ttctgttacg
     3841 ccaactggta aggaaacaag tacgcggcga atgaaatctt ccgtttgatt gtctaaagtg
     3901 atcaagcttg agatgctcga atagcgatcg ataattttag tgattttagt taaggcccct
     3961 tgaacttcgc cagtcgcaat cgtaagaaca tagctagttg ttttcacatt ccagccatct
     4021 tggagtaaac caagtaattt tccgtgcgtt aaaattccat aaaagttacc ttgctcattt
     4081 aaaaccgcaa tatatggaag ctctttgatt gtaaaaaaga cttcaaagaa agatgcattg
     4141 acgcaaatat gcttcgtcgc atttttaatt aagctcatta ctgggtcgct aagactacca
     4201 ccgttagctg cgtgtttgta aatatgcatt ttataaatat tacctaagaa tttttcacct
     4261 ttttcatcta atacaggaac acagcgataa ccagattct
//
LOCUS       DASEAA010000203         4264 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.203, whole genome shotgun sequence.
ACCESSION   DASEAA010000203 DASEAA010000000
VERSION     DASEAA010000203.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4264)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4264)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4264
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.203"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            57..746
                     /locus_tag="U0342_002666"
     CDS             57..746
                     /locus_tag="U0342_002666"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463618.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2423995.1"
                     /translation="MKYIDYHDYMHKDAIIYAYLQNNFPYIRKRIKAWESFTLDREDI
                     LLVKSGAIFEEISGKKKGIARCFFSKSLIFPTRNQIVLKAFETSEICFINAETAFGKL
                     EKDQILSNFFLQIAEKNEEDMRRQAFLGTENSKNKIISTLNFLLENNKSNNKTPIFPE
                     WLQINVLAQLANCSISTISSTVNELHAEGILDIKSSPWKLKGREKRIEILENEHQKIK
                     LNERKHKSNVF"
     gene            823..>4264
                     /locus_tag="U0342_002667"
     CDS             823..>4264
                     /locus_tag="U0342_002667"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP phosphoribosyltransferase regulatory
                     subunit"
                     /protein_id="HEM2423996.1"
                     /translation="MKKNILVVMIVSVLAISAIVSAFFLMRDDAYAIETEGFTYSPKG
                     KVVDFSSEAKYNDTWINNEKTITDKKEMKPINLARTLFLKDGRIQFLGKSVAVKSASD
                     LIELPSKTSITESKGSYKAKSDSNKTLAQLPKGTVVKLAEGRYIILDNAYLKNKQGLN
                     KKLPKNVLVSIDENKKVTLMGDKTIEELGGDDAYIEMENNHYHFDLKKEMLVSQTAKE
                     TDIDIRSIKVEIDDNAEKRSLKTAKETANETTKDSTQKEPEKQSNDTSGQKTTQNNET
                     SEGKDNQTQGASGNNANGNANNNTARSNGTGGSDSGANGSQPGGTQNKPNEGDVNKAN
                     EIIKKLNEAENTNTFQVPIVDVNLTVKGQVATAKLKLTDSSKRLNSLEAILYDSKNNI
                     VKKEKLNSTKANQNFTFNNLKYGETYQVVVQGSYKSASNKNQDTIFFRQTVEAKPVVL
                     TPKVTERGEDYMKAELTATELYGQIDKLVLKIKENNSNVTTSQKVTVDASQLTKDGQV
                     EVKFNSLSSAKEYIIEMEELIVDGKNVTDDSWYFISSTLKAKPTIEGINLSYSTDKGE
                     FVASPVNLIDRDESITSIRYVAYLEDDYKANGSNAKEYAYSVVDANQKKTAVKVGRTV
                     DMNDGSYIFVGYISGNNGQSDYTFATPASNSVIVGKKTKPTVEFSLKEAEQDKLTINY
                     EIFDADNTLLFDNLTHPTLKLYKSDAQGMYSGNPVATVDLTKKSDITNLLEFDGLESE
                     AYYVVVMTGSYNLDDGAGIMVDELIGQSSVFRTTEITKVNASFSLDSVDTTKATINVK
                     LSEAAVNLNDANLKIYEKKTNTLVKTIPLHGDFEKLMSDLGNSYPFKDLSINKEYLVK
                     IEDGYDSGMNHVPVEGQFIFKTKKEAPETDKVLLDYKASEMKLGGLAGIAATEKPLID
                     DYNAVSSITYSIYKADDLNTPLVEQEVSTAADFEKHVYFDLTNKLLGRGYSYVIKADV
                     VWNDNYEDHHIEINSDTIQIKKEKPTVEYEILSRTASEIKLNVYVEDEEESIVPGTLE
                     ITSTTGGNEQLQSGKNNVTLPLSSEGTTTIKTTGDYIITSGSSAISDIFMTKQLAALN
                     TTAPQVGAKIAMDASGKSMTIAPEPNAVAKTSVMRTKYDLKDAASSKPDYSITKSGPN
                     Q"
BASE COUNT         1663 a          665 c          808 g         1128 t
ORIGIN      
        1 gtattttcta agataataat atttatgatg gaaattcaga aagggtgata acaagaatga
       61 agtatatcga ttaccatgat tatatgcata aagacgcgat aatatatgct tatctccaaa
      121 ataattttcc gtatatccgc aaacgaataa aggcgtggga aagttttacg ctagatcgag
      181 aagatattct attggtgaaa agtggcgcaa tatttgaaga aattagtggg aagaaaaaag
      241 gcatagcacg atgctttttt tcgaaaagtt taatttttcc tactagaaat caaatagtat
      301 tgaaagcttt cgaaacttca gaaatttgtt ttatcaatgc tgaaacagct tttgggaaat
      361 tagaaaaaga tcagatttta tccaattttt ttctacagat tgcggagaaa aacgaagaag
      421 acatgcgaag acaagcattt cttgggacag agaactcaaa aaataaaatt atttcaacgc
      481 tcaacttctt gctagaaaat aataaatcta ataataaaac acccatcttt cctgaatggc
      541 ttcaaataaa tgttttggca cagttagcga attgttccat ctctaccatt tcttctactg
      601 taaacgaatt acatgcggaa ggaatattag atataaaatc ttcgccctgg aaacttaaag
      661 gcagagaaaa gaggatagaa attcttgaaa atgagcacca gaaaataaag cttaatgaaa
      721 gaaagcataa gagtaatgtt ttctaatggt ataagacttg aaaaaacttt ttgagtactt
      781 ttccaagcac aaaaattata ctaaaagagg tggaagtagg acttgaagaa aaatatttta
      841 gtcgtaatga ttgtttcggt acttgcaatt agtgcaattg tatcagcttt tttcttaatg
      901 agagacgatg cttatgctat tgaaacggaa ggctttactt atagcccgaa aggaaaagta
      961 gtagatttct catcagaagc caagtataac gatacatgga ttaacaatga gaaaacaata
     1021 acagataaaa aagaaatgaa gccaattaac ctagcaagaa cgttattttt aaaagatgga
     1081 cgaattcaat ttttaggaaa aagtgtagcc gttaaaagcg catcagattt gattgaatta
     1141 ccatccaaaa cttctataac agaaagcaaa ggtagttaca aagcaaaaag tgatagtaat
     1201 aaaacattag cacaacttcc aaaaggcaca gttgtaaaac ttgcagaagg aagatatatc
     1261 attttggata atgcctacct aaaaaacaaa caaggtctta ataagaaact acctaaaaac
     1321 gtacttgttt ccatagacga aaataaaaaa gtgactttaa tgggcgataa aaccatagaa
     1381 gaattaggcg gggatgatgc ttatattgaa atggagaaca atcactatca ctttgacttg
     1441 aaaaaagaaa tgttggtcag tcaaacagct aaagaaacag atattgatat tcgctccatt
     1501 aaagtggaaa tagatgataa tgccgaaaaa agaagtctaa aaacagctaa agaaacagca
     1561 aatgaaacaa caaaagattc aactcaaaaa gaaccagaaa aacagtcgaa tgatacttct
     1621 ggacaaaaaa caacgcaaaa taatgagacg tctgaaggta aagataatca aacacaaggc
     1681 gcgtctggca acaatgcaaa tggaaatgca aataacaata cagcgagaag taatggaaca
     1741 ggcggaagtg attctggtgc aaacggctct cagcccggtg gtacgcagaa taaaccaaat
     1801 gaaggcgatg ttaataaagc gaatgaaatt attaaaaagc taaacgaagc tgaaaacaca
     1861 aatacgtttc aagtaccaat tgtggatgtc aatttgacag ttaaaggtca agtggctaca
     1921 gctaaactaa aactgacaga ctcatccaaa aggctaaact ccttagaagc aattctttac
     1981 gatagtaaga acaatattgt aaaaaaagaa aaattgaact caacaaaagc gaatcaaaac
     2041 ttcaccttta acaatttaaa atatggcgaa acatatcaag tagttgttca gggaagctac
     2101 aagtcagcaa gcaataaaaa tcaagatact attttcttcc gccaaacggt tgaggcaaaa
     2161 ccggttgttt taactccaaa agtgacggag cgcggcgaag attatatgaa agcggaactg
     2221 actgcaaccg aactttacgg tcaaattgat aagctggttt taaaaatcaa agaaaacaac
     2281 agcaatgtaa ccacttctca aaaagttact gttgatgcga gtcaattgac aaaagacggt
     2341 caagtagaag ttaaatttaa ttcattaagt agtgctaaag aatacattat cgaaatggaa
     2401 gaattgattg ttgatggaaa aaacgtgaca gatgatagtt ggtactttat ttcctctaca
     2461 ttaaaagcga aaccaacaat tgaaggcata aatctttcat acagcacgga taaaggcgaa
     2521 tttgttgcgt caccagttaa tctaattgac agagacgaat caattacaag cattcgatat
     2581 gtagcgtatt tagaagatga ctataaagca aatggttcta atgccaagga atacgcttat
     2641 tctgtagtag atgccaacca aaagaaaacc gctgttaaag ttggtcgaac agttgatatg
     2701 aatgatggta gttatatttt tgttggttat atttctggca ataacggtca gtctgattat
     2761 acttttgcaa ctccagcttc gaacagtgtc atcgttggta aaaaaacgaa gccaactgta
     2821 gagttttctc tgaaagaagc agagcaagat aaactgacaa tcaactatga aatttttgat
     2881 gcagataaca cacttctttt tgataatcta acacatccaa ccttaaagct ttataagtca
     2941 gacgctcaag ggatgtatag tggaaatcct gttgctacag ttgatttaac aaagaaaagt
     3001 gatattacga atttactaga attcgatggt ttagaaagtg aagcttacta tgttgtcgta
     3061 atgacaggct cctataatct ggacgacgga gcagggatta tggttgatga gcttattggt
     3121 cagtcaagtg tcttccggac aaccgaaatt acaaaggtca acgcatcttt ttcacttgat
     3181 tcagttgata caacaaaagc aacaattaat gtcaaattat ctgaagcggc tgttaattta
     3241 aacgacgcta atttaaaaat ttatgaaaag aaaacaaata cacttgtcaa aacgattccg
     3301 ctacacgggg attttgagaa gttaatgagc gatttgggaa atagttatcc ctttaaagat
     3361 ttaagtatta ataaagagta tcttgtgaaa atagaagatg gctatgatag tggaatgaat
     3421 catgttccag ttgaagggca atttattttc aaaaccaaga aagaagcacc tgaaacagac
     3481 aaagtattgc ttgattacaa agcttctgaa atgaaattag gaggcctagc gggaatcgcg
     3541 gcaacggaaa agccactgat tgatgattac aacgctgtta gttctattac ctatagtatc
     3601 tataaagcag acgatttaaa cacaccgctt gtggagcaag aagtttcaac agcggcagac
     3661 tttgagaagc acgtgtactt tgatttaact aataagctct taggacgagg ttattcttat
     3721 gtcataaaag cggatgttgt ttggaatgat aattatgaag atcatcatat tgaaattaat
     3781 tccgatacaa tccaaatcaa aaaagaaaaa ccaaccgttg aatacgaaat tttaagccgc
     3841 acagcgagcg aaattaaatt aaatgtatat gtagaagatg aggaagaatc tatcgtaccg
     3901 ggaacgcttg aaattactag tacgacaggc ggtaatgagc aacttcaaag tgggaaaaat
     3961 aatgtaacct taccactttc aagcgaggga actacaacaa ttaaaacaac aggtgattac
     4021 attattacca gcggaagttc agctatttca gatattttta tgacgaaaca gttggcagca
     4081 ttaaatacta ctgcaccaca agttggagcc aaaattgcca tggatgcttc aggcaaatca
     4141 atgactatcg ccccagaacc taatgcagtt gcaaaaactt ctgtgatgag aactaaatat
     4201 gatttgaaag atgctgcaag ctccaaacca gattattcaa ttacaaaatc tggtcctaat
     4261 caat
//
LOCUS       DASEAA010000204         4256 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.204, whole genome shotgun sequence.
ACCESSION   DASEAA010000204 DASEAA010000000
VERSION     DASEAA010000204.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4256)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4256)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4256
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.204"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1329
                     /locus_tag="U0342_002668"
     CDS             <1..1329
                     /locus_tag="U0342_002668"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734412.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacterial Ig-like domain-containing protein"
                     /protein_id="HEM2423997.1"
                     /translation="INGHDSSIYVGEAWTAADNFDNAVDKDGKPVSFADIKVKEEPKV
                     DVNKAGRYQITYNYDGASTTVTLTVKEIKTAINAHDSILYIDDNWSAKDNFDSARDKD
                     GNIVSFNDVQVLGTVDTSQAGTYPITYVYAGITKTIQVIVKHPKTAVRAHDSVIYVGD
                     NWKAQDNWDNTLDKAGQKVKWKDITVKENPAVDVTKPGVYEVTYSYDGISATINVTVK
                     PRKTTVKIHDSSFYAGNSWNAKDNFDYATNKAGEKVAFKDITVAGKVDSKTPGTYEIS
                     YVYDGVKAVAKVTVLKNHSILMVKDRVIKVGEKWNAKDSFIQATRRDGKNIPFSQVKV
                     QGKVNLNKAGKYQVIYSVDPNEGTEDAGKQMLSVTATIQVENRGDAGLQDNEPRSVKD
                     NNQRAANSNDIKLIPKTGDQTNQWVLWAGLCLTGLAMLLWGFALRRRKVK"
     gene            complement(1393..1617)
                     /locus_tag="U0342_002669"
     CDS             complement(1393..1617)
                     /locus_tag="U0342_002669"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465468.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ferredoxin"
                     /protein_id="HEM2423998.1"
                     /translation="MKYCLVEKDTCIACGACSIHAPDVFDYDTEGLAFNILDNNTGTK
                     VIPEDLVETVIDAEFACPSLSIKVSDSSFH"
     gene            1771..2778
                     /locus_tag="U0342_002670"
     CDS             1771..2778
                     /locus_tag="U0342_002670"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2423999.1"
                     /translation="MDKLDNYIMTILEKSITPRKLPFLHTVLAGRRTGQAVQDIHLFQ
                     MQHLFGLVPNLKASYLEKRISELVHQGSILSTENGYVTQGQLVAMFENDYPNFQGFTF
                     QGQAFAFFAHLRLAVQVVSNIHHHESYYLPVIRDKKVQQFIKHWVKHRDKSNLANQLY
                     GELVAWMNKLAVARPAFLVERFSGGELMGYTTEQIASKYQVEKWDVYFEVLHEVHRLL
                     IAMKKTPEEWPILASLVPDELNGLTSSAMQTYVLWQNGADLEAIERIRNLKKSTIHDH
                     FVEIRATLKEANVPYLPEETIIQTIITKKWNLLREIKAEFPDLDYYQIRLAVVSREGK
                     Q"
     gene            2775..4178
                     /locus_tag="U0342_002671"
     CDS             2775..4178
                     /locus_tag="U0342_002671"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-dependent DNA helicase RecQ"
                     /protein_id="HEM2424000.1"
                     /translation="MNLEKELKEYLGFDEFRPGQKEVIETALAKRNCFAMLPTGTGKT
                     ICYQLAGHLMDGLVLIVSPLLSLMQDQMERMRAHGEKRVAALNSFLKREEKGQVLANI
                     HLYKFIFLSPEMLNNETVKNLLLKQRISLFVIDEAHCISQWGHDFRPDYLMLGKFIQE
                     AEFPVTMVLTATATKKVRADILTQLHLTDCAQIVYSVNRPNISLQVEKFSNQHVKKDR
                     LYALVRKLQTPGIIYFSSKKLAESTALELSEIADLRVAYYHGDMDTEDRIIIQQQFVY
                     GQLDVICATSAFGMGIDKADIRYVIHYHMPADLEAYLQEIGRAGRDGENSVAILLYAN
                     GDEFIQMQLADQDIPDANLMNLTNEQRKTLPETEQRFIEYYQRSGLSTKELTDKMDYR
                     KKWKRANLQQFIGYLHTTDCRRNYILRYFEETPLEVTPENCCDLDGAEIIDFEKRPIT
                     QQKEIPTWEANLAYLLQ"
BASE COUNT         1485 a          673 c          869 g         1229 t
ORIGIN      
        1 attaatgggc atgactcgtc aatctatgta ggagaagcat ggacagcggc ggataatttt
       61 gataatgcag ttgataaaga cgggaagcca gtttcttttg ctgatataaa agtgaaagaa
      121 gagcctaaag tagatgtcaa caaagcaggc agatatcaaa tcacctataa ttatgatggt
      181 gcctcgacta ctgttacttt aactgtgaaa gaaatcaaaa cagctattaa tgcacatgat
      241 tctattctgt atattgatga taattggtca gcaaaagata attttgatag cgctagggat
      301 aaggatggaa atatagtatc ctttaatgac gtacaagtct tgggaactgt tgatacaagt
      361 caagcaggaa catacccgat cacatatgtt tatgctggaa ttaccaaaac cattcaagta
      421 attgttaaac atcccaaaac agctgtgcga gcccatgatt cagtgattta tgttggagat
      481 aattggaaag ctcaagataa ttgggacaat acgctcgata aagctggtca aaaagtgaaa
      541 tggaaagata ttactgtcaa agaaaatcct gccgtggatg taacaaagcc aggcgtctat
      601 gaagttacct acagttatga cggtatttct gccacgatta atgtaaccgt gaaaccaaga
      661 aaaacgactg taaaaattca tgatagtagt ttttatgctg gaaatagttg gaatgcgaaa
      721 gataattttg actatgcaac gaataaagca ggtgaaaaag tagcattcaa agatattact
      781 gtcgcaggta aagttgatag caaaacaccg ggaacatatg aaattagcta tgtatacgat
      841 ggtgtgaaag ctgttgctaa ggtcactgtt ttgaaaaacc attctatttt gatggtgaaa
      901 gatcgtgtca taaaagtagg cgagaaatgg aacgcgaaag atagctttat tcaagcaact
      961 agacgtgatg gaaaaaatat tccattttca caagtaaaag tgcaaggaaa agtaaatctg
     1021 aacaaagcag gcaaatacca agttatatat tcagtagatc caaatgaagg aactgaagac
     1081 gcagggaaac aaatgttgtc agtaactgct actattcagg ttgaaaatag aggagatgcg
     1141 gggttacaag ataatgaacc acgaagcgta aaagataaca atcaacgcgc tgctaactcc
     1201 aacgatatca aactcattcc taaaacagga gatcaaacaa atcagtgggt tttatgggct
     1261 ggcctttgtt tgactggttt agcaatgctt ctatggggat ttgctctaag gagacgaaaa
     1321 gtgaaataat atttattaaa aataaaaaag gaaggtttcc aaacagcgga aaccttcctt
     1381 tttcgtgtat tattaatgaa atgaactatc ggaaactttg atagaaagcg aaggacaggc
     1441 aaattctgcg tcaataaccg tttcaaccaa gtcttcgggg attacttttg ttccagtgtt
     1501 attatctaat atattaaagg caagaccttc tgtatcataa tcaaaaacat caggtgcatg
     1561 aatggaacaa gcgccacaag caatacaagt gtctttttcg acaagacaat acttcaattt
     1621 tctacgcttc ctttctaaaa taactatttg cagccagatt ttttcttttt ctattgtacc
     1681 atattttgaa aaagtttttt cggaaaaatt aatgtagaac aagtgtttct gtgttatgat
     1741 tatggtacaa aaaaaggtgg tggacatgtc ttggataagc tagataacta tattatgaca
     1801 attttagaaa aaagtatcac acctagaaaa ttaccatttt tacatactgt tttagctgga
     1861 agaagaactg gacaagctgt tcaagatatc catctttttc aaatgcaaca tttatttgga
     1921 ctagtgccaa atttaaaagc aagctattta gaaaaacgaa tttcggaatt agtgcaccaa
     1981 ggtagcattc tttctactga aaatggttat gtgacacaag ggcaactagt agctatgttt
     2041 gaaaatgatt acccaaactt ccaaggtttt acatttcaag ggcaagcttt tgcttttttt
     2101 gcccatttgc gactcgcagt tcaagttgtt agtaacattc atcatcatga aagctattat
     2161 ttaccagtta ttcgtgataa gaaagtccaa caatttatta agcattgggt gaagcaccga
     2221 gataaatcta atttagcgaa tcagttatac ggtgaactcg ttgcatggat gaataaatta
     2281 gcagttgctc gaccagcgtt tttagtggaa cgtttttctg ggggcgaatt aatgggctat
     2341 actacagaac aaattgcctc aaaatatcaa gtggagaagt gggacgttta ttttgaggtg
     2401 ctccatgagg ttcaccgttt gcttatagcg atgaaaaaaa cccccgaaga atggccgatt
     2461 ctagctagtc ttgtaccgga tgagctcaat gggttaacta gttctgccat gcaaacctat
     2521 gtattatggc aaaatggagc tgatttagaa gcaatcgagc gaattcggaa tttgaaaaag
     2581 agtaccatcc atgatcactt tgtagaaatc cgagctactt tgaaagaagc gaatgttcct
     2641 tatttaccag aagagacaat catccaaacg attattacaa agaaatggaa tttactgcgt
     2701 gaaataaaag cggagtttcc tgatttggat tattatcaaa ttcggttagc agttgttagt
     2761 agggagggta agcagtgaac ttagaaaagg aattaaaaga atatcttggt tttgatgagt
     2821 tccgccctgg ccaaaaagaa gtaattgaaa cagctttagc aaagcgaaat tgttttgcta
     2881 tgttacctac tggaactgga aaaaccattt gttatcaatt agcgggtcat ttgatggatg
     2941 gattagtatt gattgtttct ccacttctct cccttatgca agatcaaatg gagcgaatgc
     3001 gtgctcacgg agaaaagcga gtagcagcgc ttaatagctt tttaaaacga gaagaaaaag
     3061 ggcaagtcct tgcaaacatc catttatata aatttatttt tttatcacca gaaatgctaa
     3121 ataatgaaac ggtgaaaaac ttactattaa aacaaagaat cagcttattt gtcatagatg
     3181 aagcgcattg catttcgcag tggggacatg attttcgccc tgattatttg atgttaggta
     3241 agttcattca agaagccgaa tttcctgtga ctatggtgct gacagctacg gcaaccaaga
     3301 aagttagagc agatatttta acgcaattac atctaacgga ttgtgcgcaa attgtttatt
     3361 ctgttaatcg accgaatatt tctttacaag tggagaaatt ttctaaccag catgtaaaaa
     3421 aagaccgttt atatgcgctt gttcgcaaac tacaaacacc cggaattatt tatttttcta
     3481 gtaaaaaatt agcggaaagc actgcgcttg aattaagcga aattgctgat ttaagagtag
     3541 cttattatca cggggatatg gatacagaag atagaattat tattcagcaa caatttgttt
     3601 acgggcagct ggatgttatt tgcgccacta gcgcatttgg aatggggata gataaagctg
     3661 acattcgcta tgttattcat tatcatatgc ctgcagattt ggaagcatat ttgcaagaaa
     3721 ttggtcgagc aggtcgtgat ggcgaaaaca gtgtggcgat tctcttatac gcgaatggag
     3781 atgaattcat tcaaatgcaa ttagccgatc aagatatccc agatgccaac ttaatgaatc
     3841 tgacgaatga acaacgcaaa acgttacctg aaacagagca acgttttatt gaatactacc
     3901 aaagaagtgg tttaagtacg aaagaattaa ccgacaaaat ggattatcga aaaaaatgga
     3961 agcgggctaa tttacaacaa tttattgggt atctgcatac aacggattgt cgccgtaatt
     4021 atattctacg atactttgaa gaaacgccgt tagaagtcac cccagaaaac tgttgtgatt
     4081 tggatggagc agaaataatc gattttgaaa aaagaccaat aacacagcaa aaagaaattc
     4141 caacatggga agctaattta gcttatttat tgcaatagtt ttgctgttac gaaatttgac
     4201 aaaaactata tagtttcata ttttttgtga aaaaaagact tgtttaaaag taaaaa
//
LOCUS       DASEAA010000205         4251 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.205, whole genome shotgun sequence.
ACCESSION   DASEAA010000205 DASEAA010000000
VERSION     DASEAA010000205.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4251)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4251)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4251
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.205"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            76..1269
                     /locus_tag="U0342_002672"
     CDS             76..1269
                     /locus_tag="U0342_002672"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine hydrolase"
                     /protein_id="HEM2424001.1"
                     /translation="MNRRERRKHKRRKNMIIVLSTVFLLFIATSWMIYEFKSKQEQTV
                     SAPTKKKAATATNPPENAATNEPEETKEPEPVEEKPKETIVKNQEIDNYLQKIGFSGS
                     ALVVRDGETIIQKGYMYANRDEKVLNTPDTLFYIGSSQKAIIATALLQLEEKGKINTN
                     DPISKYIPDFPNGNKILVKNFMNHTSGIVGRPKLTSNMTPDQIIKAIEKRGIKSQPGK
                     WDYLDANYAVVGYLVEKVSGQPLATYLQENIFTPAGMKHTGYYQKDVDGGKNVSTGYK
                     IDENGVFQSPKLADLTKLYGAGDISMSTTDMYLFDKALMDKKLISEASLKKMFTSGSK
                     STYGMGFYVDPGSYNSHGVVTGWDVSNSVSHTGRTYVILFSNVQNHIASFGKVNNDIY
                     GFLNK"
     gene            complement(1310..2230)
                     /locus_tag="U0342_002673"
     CDS             complement(1310..2230)
                     /locus_tag="U0342_002673"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464069.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2424002.1"
                     /translation="MYQKHKWAAILMTVLLAVVLTACGSSSDKDSSKEKESATKTVTD
                     TMDRKVEVPTTPKRIVALQNVSEMEILGVKPVGTTDYYITTYPEATKGTESVGNDKPS
                     IEKIANLKPDLIIISDYQKDLLENLEKVAPVYITHFGDTPDKQLSNIANLLNKKAEKE
                     KWDKDYAASSKEAKATLKDAGVANEKAAVIQFYGKEIYVHDAKVFDGLYSGAGFTPTD
                     AAKANKETKAISSEAIPEYAAGADRLFILMPADGNTDSVDEMLKGVWKDIPAVKKNQV
                     YKVDNTKWSDYSASAQLYQMEDAVKQITGK"
     gene            complement(2341..2691)
                     /locus_tag="U0342_002674"
     CDS             complement(2341..2691)
                     /locus_tag="U0342_002674"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464070.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIA"
                     /protein_id="HEM2424003.1"
                     /translation="MTISKIMEIGPLVPAFEEEKIVILFGPTATNELREISVIHEFQD
                     VPNNALTKGNTLLIGEQAYTIEEVGSDANKNLEELGHISVYFRSGQNEVLPGAIVVSP
                     EIFPTITVGDSIQF"
     gene            complement(2710..3696)
                     /locus_tag="U0342_002675"
     CDS             complement(2710..3696)
                     /locus_tag="U0342_002675"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464071.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIB"
                     /protein_id="HEM2424004.1"
                     /translation="MYQSIHVNKGQGGWGVGLDITPSEPRTKVVSITGGGIHPVALKI
                     AELSGAEAVDGFKNSIPEEEMMCVVIDCGGTARIGVYPMKRIPTVDVLPSSPSGPLAK
                     HITEDIFVSGVKPEDIEVRDRSTEPGKPFDREKFKEDYAKIKEDQEEASQLKEGFLVK
                     FSRGIGKAMGVFYQAGRDSVDMLIKNIIPFMAFISMIIGIINYTGIGKLIANTLSPLA
                     GSLWGMLLIAFICSLPFLSPILGPGAVIAQVIGVLIGSQIAIGAIPVTYALPALFAIN
                     AQAGCDFIPVGLSLAEAKPKTVQFGVPAILYSRMITGVLAVVIAWVFSIGMY"
     gene            complement(3717..4238)
                     /locus_tag="U0342_002676"
     CDS             complement(3717..4238)
                     /locus_tag="U0342_002676"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464072.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS glucitol/sorbitol transporter subunit IIC"
                     /protein_id="HEM2424005.1"
                     /translation="MNYIEWFGTNFIGLFEAGGKQFVSFMTGIVPLLIVLLTFTYSII
                     AFIGEERVNRAIQFSAKNMILRYTLMPVLSVLMLTNPMAYTFGRFVKEHQKPAFYDSV
                     VSFLHPVTGLFPYANAGELFVYLGIANGVVEAGYSMSSLAVRYFLAGIVVILMRGVIT
                     ESITKFLMRKEKV"
BASE COUNT         1380 a          804 c          781 g         1286 t
ORIGIN      
        1 tttgggatat tttctattaa tacattctct tttgggaaag tcatttaacg attagactag
       61 accaggagtg atgaaatgaa tcgacgcgaa agacgtaaac acaaaagacg caagaacatg
      121 attatcgtgt tgagtactgt atttctactg tttattgcca caagttggat gatatacgaa
      181 ttcaaaagta aacaagagca aacagtatcc gcacctacta agaagaaagc agcaaccgca
      241 acaaacccac cggaaaatgc agcaactaat gagcctgaag aaacgaaaga gcctgaacca
      301 gtagaagaaa agccaaagga aacaattgta aaaaatcaag aaattgataa ctatttacaa
      361 aaaattggtt ttagtggttc ggcactggtt gttcgcgatg gagaaactat catacaaaaa
      421 gggtatatgt atgcaaatcg tgatgaaaaa gtattgaata caccagatac tttgttttat
      481 attggctctt ctcaaaaagc aatcatagca acggcacttt tacaattaga agaaaaaggt
      541 aaaataaata cgaatgatcc aatttcgaag tatatacctg actttcctaa tggtaataag
      601 attttagtga agaactttat gaatcataca tctggtatag ttggacgacc aaaattaacg
      661 agtaatatga caccggatca aattattaaa gctattgaaa agcgaggaat taaatcacaa
      721 cctgggaaat gggattattt ggatgctaat tatgctgtag taggttatct tgtagaaaaa
      781 gttagtgggc aacctttagc tacctatctt caagaaaata tatttacccc tgcaggaatg
      841 aagcatacag gatactatca aaaagatgtt gatgggggaa aaaacgtatc aacaggctat
      901 aaaattgatg aaaatggagt ctttcaaagt ccaaagcttg cagacttaac gaaattatat
      961 ggtgcagggg acattagtat gtctacaacg gatatgtatt tgtttgacaa agcattgatg
     1021 gataaaaaat tgatttctga agcaagtttg aaaaaaatgt tcacatcagg aagcaaatca
     1081 acttatggaa tgggattcta tgtggatcca ggtagttata atagtcacgg agttgtgacc
     1141 ggttgggacg tatctaatag tgtcagtcat acaggaagaa cttatgttat attattctcc
     1201 aacgtccaaa accacattgc ttcattcgga aaagtgaata atgatattta tggtttctta
     1261 aataaataat aaaaaaaacc gattctattt gtagaatcgg gtttttttat tatttaccag
     1321 taatttgttt tacagcatct tccatttgat aaagttgagc agaggcactg tagtcactcc
     1381 atttagtatt atccacttta tacacttggt ttttcttcac agctggaata tctttccaaa
     1441 caccttttag catttcatcc acagaatcgg tattgccatc agctggcatt aagataaaga
     1501 gacgatctgc tcctgctgca tattcaggaa ttgcttcact agaaatagct tttgtttctt
     1561 tgtttgcttt agcagcatct gtcggtgtga aacctgcgcc ggagtataag ccgtcaaaga
     1621 cttttgcatc gtgcacatag atttctttgc cataaaattg aattactgcc gctttttcgt
     1681 tcgcaacacc agcatctttg agtgttgctt ttgcttcttt agagcttgcc gcgtaatctt
     1741 tgtcccattt ttctttttct gcttttttat ttaagagatt ggcaatgttc gaaagttgtt
     1801 tgtccggagt atcaccaaaa tgcgtgatat aaacaggagc cactttttcc aagttctcta
     1861 aaagatcctt ttggtaatca ctaataataa ttaagtctgg ttttaaatta gcgatttttt
     1921 caatactagg tttgtcatta ccaacacttt cggtcccttt tgttgcctca gggtatgtag
     1981 tgatgtaata atcagttgta ccaacaggtt taacgccaag aatttccatt tcacttacat
     2041 tttgaagtgc gacaattctt ttcggtgttg ttggaacttc tactttacgg tccattgtat
     2101 cagtgaccgt ttttgttgcg gattcctttt ctttgcttga gtctttatcc gaagaactgc
     2161 cacaagcggt taatactact gctaaaagca cagtcatcaa aatagcagcc catttatgct
     2221 tttggtacat tgtgtatttc ctccctaatt gaaaatgatt ttcattatcg ttacaaaagt
     2281 aattatatcg aaaacaggga ggattgacaa ggtgaaatgt agcacaaaaa atttttatgt
     2341 ttaaaattga atactatcgc caaccgtaat tgttggaaaa atttctggag aaacaacaat
     2401 agctcccggt aaaacttcat tttgtcctga gcggaaatag acggaaatat ggccaagttc
     2461 ttcgagattt ttgtttgcgt ctgagccgac ttcttctatt gtatacgctt gttcaccaat
     2521 gagtaacgtg ttcccttttg taagggcgtt attcggtaca tcttggaatt cgtgtataac
     2581 agatatttcg cgtaattcat tggtagcagt tggtccaaat aagataacga ttttttcttc
     2641 ttcaaaagcg gggacaagtg gcccgatttc cataatttta cttatagtca tagcaaattc
     2701 ctcctaaaat taatacatac cgatactgaa tacccatgcg ataacaacag caaggacacc
     2761 agtaatcatc cggctataaa gaatagctgg aacgccgaac tgaaccgttt ttggcttagc
     2821 ttctgcaaga gagagtccta cggggataaa gtcgcaacca gcttgagcat taattgcaaa
     2881 tagtgctggt aaggcgtaag taactggaat agcaccaatc gcaatttgag aaccaatcag
     2941 aacgccgatt acttgagcga taactgctcc aggaccgaga ataggtgaaa gaaatggcaa
     3001 actacaaata aaagcaatta ataacattcc ccagagtgat ccagctaaag gagagagcgt
     3061 attcgcaatt aatttcccaa tcccagtgta attaataata ccgataatca tactaataaa
     3121 agccataaac ggaataatat ttttaataag catatccaca gaatcacgcc ctgcttgata
     3181 gaacacaccc attgctttac caatgccacg agaaaatttc acaaggaaac cttcttttaa
     3241 ttggcttgct tcttcttgat cttctttaat cttggcataa tcttctttga atttctctct
     3301 gtcaaatggt ttcccaggtt cagtgcttct gtctcgaact tcaatatctt caggtttgac
     3361 gccagaaaca aaaatatctt ctgtaatatg ttttgcgagc ggacctgatg gagaagaagg
     3421 gagcacatcg actgttggaa tacgtttcat cggataaaca ccaattctcg cagtgccacc
     3481 acaatcaata acaacacaca tcatttcttc ttctggaatt gaatttttaa aaccatccac
     3541 ggcttcagct ccagataatt cggcaatttt cagtgctaca ggatgaatac caccaccagt
     3601 aatagaaaca acttttgttc tcggttcgct cggagtaata tctagtccga ctccccaacc
     3661 gccttgacct ttattcacat gaattgattg atacatttca tttgcctcct tctatttcag
     3721 actttttctt ttcgcattaa gaatttcgta attgattctg taatcacacc acgcattaat
     3781 ataaccacga ttccagctag gaagtaacga actgcaaggc ttgacatact atatccagct
     3841 tcgaccacac cattagcaat gcctagataa acgaataatt caccagcatt cgcatatgga
     3901 aataatcctg taactgggtg caaaaacgat acaacggagt cataaaaagc tggtttctga
     3961 tgctctttaa caaaacgacc aaatgtataa gccattggat ttgttagcat cagtacggat
     4021 aaaacgggca ttaaggtata gcgcaaaatc atgttcttgg ctgaaaattg gattgctcgg
     4081 ttgactcgct cctccccgat aaaggcgata atcgagtaag taaaggttaa aaggacaatt
     4141 aaaagaggga caattcctgt cataaaactc acaaactgtt tgccgccagc ctcaaatagg
     4201 ccgataaagt ttgttccaaa ccattcaata taattcacta ggaaacactc c
//
LOCUS       DASEAA010000206         4250 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.206, whole genome shotgun sequence.
ACCESSION   DASEAA010000206 DASEAA010000000
VERSION     DASEAA010000206.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4250)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4250)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4250
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.206"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1253
                     /locus_tag="U0342_002677"
     CDS             <1..1253
                     /locus_tag="U0342_002677"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2424006.1"
                     /translation="FQILETLLLASFPNLQALAKKVHVSYSGIKKEIKELNEELSERN
                     LYISTGNQVEIMGDEFSLRIFYTFLFLVAYSGDRWPFSFVRYDEITDLLESCPKEIYR
                     ANSIDKAMMIHYYVAMHLLRDRMNCQIDTTRQFKVALYKACTEESKKSESAFIKKVAK
                     QLPNRNYKEMTYTTQIILSTIVAFGSYSSIEKMPSFFYMDEQLEEMGFMKLVDFASER
                     VNDNLSIPFSEKEMELLRYSFASINYRYFLLDNLINKFNNIVPGYTNLDRNIRKIHKV
                     NHLEPLISQLVNLKEMDSLKPFEERLASDYLIILDKRIDFSIHTLPIKVTILSTISNE
                     TAVFDFMRYFSSYYNLEIINQVDPVVDLYISDFSVSPEVLTSLRINQPIIYVNTRWLE
                     SDYVKINDNLAKIARKKFIANKKD"
     gene            1516..3663
                     /locus_tag="U0342_002678"
     CDS             1516..3663
                     /locus_tag="U0342_002678"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463989.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BspA family leucine-rich repeat surface protein"
                     /protein_id="HEM2424007.1"
                     /translation="MKKFSMRVVLIISVLFIAFGSANVSIAQERDTTNKLPEEELGSL
                     DTSNLIAEEVAQEKPAEVENLEEIPTTDELMQNPDVREQPVADSDDSDLTVVSSGAYW
                     TIYRNTANGEYSMRMFGNVPSSRPTAWNSYLKSIKHIEIEEATLTGSFASYFRNNVFT
                     VLESVRIERSNLSGVTSFEMAFYSPTLQKVIIRDNDYPTAPSLRTTEYMFGYTHKLTE
                     LDVSGLDTSAVTNMNCMFNYCSVLEELDVSNFDTSSVTTMRDMFGSSGKLEKLDVSNF
                     DTSSVTTMQAMFYGCTSLEELDVSNFDTNSVTNMSYMFYNCAGLEELDVSNFDTSSVT
                     NMYGTFVGCNSLEELDVSNFDTSSVTTMQAMFNACRALEKLDVSNFDTSSVTTMQAMF
                     ENCTGLGELDVSNFDTSSVTTMAYMFDGCTSLEELDLSNFDTSSVTTMAYMFQNCTAL
                     KSLYLDNFTTPKTMTGMFTGTTALTYLFASHNLRAFDGLANTRWYDEKNWVQFSNYKE
                     LQMYHEYQREPTGYRKGVFLSLTMDAMGGQFEDAEEQKVQNKVSGEYWEEVVPVKEGH
                     YFDGWYLDRNFTNKFDFSLPVAVSTTIYAKWVENYTVVIPASISLNEATELKVEGINR
                     GSKTLSVGLNYEETTISESNKLTLSNTADTTVQCLAPLSWDGSETNPKNAILTLAPGS
                     EITEGDAVMAIEAPENIQAGKYTGNVVFSIKYE"
     gene            3729..4202
                     /locus_tag="U0342_002679"
     CDS             3729..4202
                     /locus_tag="U0342_002679"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463990.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA (uracil-5-)-methyltransferase"
                     /protein_id="HEM2424008.1"
                     /translation="MKKKRVVIISLLLLLVSVIGISSYFLFKDKINLLDVDHSAVDWN
                     GKKQKDTSGEENTIAIPGFEKVTLYANETTQAVNFHNPEINDCYFKISLIHPDGSVLW
                     ISDLIEPGKGMYSIELEKTLAVGEYENAVLKYECFSLNDQSPLNGSEINLKLVVV"
BASE COUNT         1407 a          648 c          880 g         1315 t
ORIGIN      
        1 aatttcaaat tctcgaaact ttattgctgg cttccttccc taatctacaa gcattggcaa
       61 aaaaagtaca tgtttcttat tctgggataa agaaagaaat aaaagaattg aatgaagagc
      121 taagtgaacg gaacttgtat atttctacag gaaatcaggt agaaataatg ggggatgaat
      181 tttcattaag aatattctat accttccttt ttttagtcgc atatagcggg gatcgttggc
      241 cattttcttt tgttcgatat gatgaaatca ctgacttatt agagagttgt ccaaaagaaa
      301 tttatagagc aaactcgata gataaggcga tgatgattca ttattatgtc gctatgcatt
      361 tattaagaga tcgaatgaat tgtcaaattg atacaactag gcagtttaaa gtggccctat
      421 ataaggcttg caccgaggag tctaagaaat cagaaagtgc gttcattaaa aaggtagcga
      481 aacaacttcc taataggaac tataaagaaa tgacctacac gacgcaaatt atactgagta
      541 ccattgttgc tttcggtagt tattcttcga ttgaaaaaat gccttccttt ttctacatgg
      601 atgaacagtt agaagaaatg ggcttcatga aactagttga ttttgccagt gaacgagtaa
      661 atgataatct ctctattcca ttttcagaga aagagatgga attgctccgt tactcctttg
      721 cgagtataaa ttatagatat ttcttacttg ataatttaat caataagttc aataatattg
      781 tgccagggta tacaaatctt gatcgaaata taagaaaaat ccataaagtg aatcacctag
      841 aaccattgat tagccaatta gtaaatctaa aagaaatgga ttcattaaaa ccgtttgaag
      901 aaagacttgc ttcagattat ctgatcattt tggataagcg gattgatttt tctatacaca
      961 ccttgcctat taaagtaact attttatcga ccatatctaa tgaaacagcc gtatttgatt
     1021 ttatgaggta tttttctagt tactacaatc tggaaataat taatcaagtt gatccggtgg
     1081 tggatttata tataagtgat ttttccgtat ctcccgaagt gttgacctct ttacgtatca
     1141 atcaaccaat aatctatgta aatactagat ggctagaatc tgattatgtc aaaattaatg
     1201 ataatctggc gaaaatagcg agaaaaaaat ttatcgctaa taaaaaagat tagggaaaca
     1261 cttgttggaa tggatatgga aaatgtttaa atggaaaacc aaggtcttgt ccgagtaatg
     1321 atcgttactc ggattttttt atttctattt ttcatttgta caatactaat ggaaaaagta
     1381 aacacaccaa ctaagccgta aaattttaag aagttaaaat tttatggcca gaaatgcttc
     1441 tcgactcctc tataattaag ttgcagctag aaagtttgca tctagaaatt aactacgaaa
     1501 gaaggagggg agctgatgaa aaagttttcc atgcgagtgg tccttattat ttctgtgctt
     1561 tttattgctt ttgggagcgc taatgtttct atcgcacaag aaagggatac aacgaataag
     1621 cttccagaag aggagctggg ttctctggat acctctaatc tcattgcaga agaagttgcg
     1681 caagagaaac cagccgaggt cgagaatcta gaagaaatcc caactacgga tgagttgatg
     1741 caaaatccag atgttcgaga gcagcctgtt gctgattcgg atgattcgga tttaacagtg
     1801 gtaagctcag gtgcttactg gacgatttat cgtaatactg cgaacggcga atatagcatg
     1861 cgtatgtttg gcaacgtgcc gagcagtaga ccaaccgctt ggaatagtta tttaaaaagc
     1921 attaaacata tagagattga agaagctacg ctgacaggaa gttttgcatc gtattttaga
     1981 aataatgttt tcacagtact tgagagtgtg aggattgaac gttcaaactt gtctggagtg
     2041 acatcttttg aaatggcatt ttatagtcca acacttcaaa aagtgataat cagagacaat
     2101 gattatccga cagcaccatc tttacgcact acggagtata tgtttggtta tactcacaaa
     2161 cttacggagc ttgatgtgag tggtcttgat acgagtgctg taactaatat gaattgtatg
     2221 tttaactact gtagcgtact tgaggaactg gatgtaagta attttgatac cagttccgtt
     2281 actactatga gggacatgtt tggtagtagt ggaaaattgg agaagctgga tgtaagcaat
     2341 tttgatacca gttcagtaac tactatgcag gccatgtttt atggttgtac tagccttgaa
     2401 gagcttgatg taagtaattt tgataccaat tcagtgacta acatgagcta catgttttac
     2461 aattgcgctg gtcttgaaga gcttgatgta agtaattttg ataccagttc cgttactaat
     2521 atgtatggca cgtttgttgg ctgtaatagt cttgaagagc ttgatgtaag taactttgat
     2581 acgagttcag taactactat gcaggccatg tttaatgcct gtagagcact tgagaagctg
     2641 gatgtaagca attttgatac gagttcagta actactatgc aggccatgtt tgaaaattgt
     2701 actggccttg gagagcttga tgtaagtaac tttgatacga gttcagtaac tactatggct
     2761 tacatgtttg atggatgtac tagccttgaa gaattagatt taagtaattt tgataccagt
     2821 tcagtaacta ctatggctta catgtttcaa aattgtacag cgttaaaatc tttatatctg
     2881 gataatttta ctaccccaaa gactatgaca ggtatgttta ctggaaccac cgccttaacc
     2941 tacttgtttg ccagtcacaa tttaagagct tttgatggcc tagcaaatac aagatggtat
     3001 gacgaaaaga attgggtaca gttttcgaat tacaaggaac tacagatgta tcatgaatac
     3061 caaagggaac ctactggcta cagaaaaggt gtgttccttt ccttaacgat ggatgcgatg
     3121 ggtgggcagt ttgaagacgc ggaggaacaa aaggtacaaa ataaagtttc tggggaatac
     3181 tgggaagaag tggttcctgt aaaagaagga cattattttg atgggtggta tcttgatcga
     3241 aacttcacta ataagtttga tttttctttg cctgttgctg tatctacaac tatctacgct
     3301 aaatgggtag aaaattatac ggtggttatt ccagcttcta tttccttaaa tgaagctact
     3361 gaattgaaag tagaagggat taatcgagga agtaaaactt tatccgtagg cttgaattat
     3421 gaggaaacaa ccatttctga gagcaacaag ctaaccttgt ccaatacggc agacacaaca
     3481 gtccaatgct tggcgccact gagttgggac ggttccgaaa ctaatccaaa aaatgccatt
     3541 ttaacccttg ccccaggttc ggaaataaca gaaggcgatg cagtcatggc tattgaagca
     3601 ccagagaata tccaggcagg aaaatataca gggaacgttg tgttttcgat taagtatgaa
     3661 tgatgtaaat taaccagact agtgattatg tcacagtcct gtggttatga ataaattgga
     3721 ggttacctat gaagaagaaa agagtagtga ttatatcctt actactattg ttagtaagtg
     3781 tcattggaat cagtagttat tttctattca aggataaaat aaatctgttg gatgtagacc
     3841 attctgccgt tgattggaac ggaaaaaaac agaaggatac aagtggagaa gaaaatacaa
     3901 ttgccattcc agggtttgaa aaagtaacgt tgtatgcaaa tgaaacaaca caagcagtga
     3961 atttccataa tccggaaatt aatgattgtt acttcaaaat atcgcttatt catccggatg
     4021 gttcggttct atggatatct gatttaatcg aaccgggaaa aggtatgtat tccattgaat
     4081 tagaaaaaac gttagcggta ggcgaatatg aaaatgcagt attaaaatat gaatgttttt
     4141 ctttaaacga tcagtcacct ttaaacgggt ctgaaataaa tttaaaatta gttgtcgtct
     4201 agacaaagga ggaaattttt tatgaataaa ttagtattaa gtacgttaag
//
LOCUS       DASEAA010000207         4200 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.207, whole genome shotgun sequence.
ACCESSION   DASEAA010000207 DASEAA010000000
VERSION     DASEAA010000207.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4200)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4200)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4200
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.207"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            177..1253
                     /locus_tag="U0342_002680"
     CDS             177..1253
                     /locus_tag="U0342_002680"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465939.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424009.1"
                     /translation="MKKAIMAATIFVLLLATLSGCSSPKSDFTAALQKTAENRQYTTN
                     VTFQVNNLSESYIKKLGPEIDLNQLKKSNIQYKISVDSDSASSYSASSIHWKGKKPLD
                     LTIHALQNSDDGKAYIPVSDFYDASDSISSLLPDSAARIFNQVLDQNKDLESKYLNLF
                     ETIQNFSNQTIDTETVDRQAKVLKKMEETAGIAIYSYLNDLDDQHFTSKDNGDIVLKL
                     SKNEISDLVNSVITKLDDNGSVVALIGEIDGSTQKAAKKKWNNAQKSIQSSLKALTEN
                     KAQTLDFKLTLTPDSKKGFSKAIITTNFEDTKTKDLMDFTTTIDMLDYEKVPPMPKGK
                     EIVSKKELDKAISDGLKLYLSSAQ"
     gene            complement(1295..2125)
                     /locus_tag="U0342_002681"
     CDS             complement(1295..2125)
                     /locus_tag="U0342_002681"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465940.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2424010.1"
                     /translation="MKKVLGFIFTLSLVLVLTACGGSSDKASSSKDDNQLVVGASNTP
                     HAQILEQAKPILKDKGIDLKIVKYTDYVMPNKALEEGDLDANYFQHKPYLELEEKEKG
                     YKFADVGAIHIEPMGIYSKKVKDIKDLKDGAQVLLSNSKSDWPRVIGIFVDNGLLTLK
                     DGVKPQDATFDDIKDNPKNLKFKYDFDPAYLMTAYNNEEGDVVAINSNFVVDQGLNPS
                     KDAIAIESKDSPYANIVVTTEKKKDDKNIKELVKVLHSKEIQDYITKEWDGAVVPVDK
                     "
     gene            complement(2190..2864)
                     /locus_tag="U0342_002682"
     CDS             complement(2190..2864)
                     /locus_tag="U0342_002682"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465941.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2424011.1"
                     /translation="MTKLQELFPNVDFQMMWVATQETLYMTLVSLFAVFLLGIVLGLL
                     LFLTNNKKHAGARILYWITAILVNVFRSIPFIILIVLLLPMTKSLVGTVIGPKAALPA
                     LIISAAPFYGRMVEIAFREVDKGVIEAAKSMGANMFTIIGKVLIPEALPAIISGITVT
                     AISLVGFTAMAGVIGAGGLGNTAYLEGFQRGQPDVTVLATIIILIIVFIFQFIGDFLT
                     KRTDKR"
     gene            complement(2861..3883)
                     /locus_tag="U0342_002683"
     CDS             complement(2861..3883)
                     /locus_tag="U0342_002683"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465942.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM2424012.1"
                     /translation="MITLQNVVKEYTSRNNKVLAVDHVDLEIEQGEIFGVVGYSGAGK
                     STLIRMFNGLELPSAGTVEVDNLLISQIRGSKLRKARQQIGMIFQHFNLLWSRTVAEN
                     IAFPLEIAGVRGEKRRFRVNELIRLVGLEGKENAYPSELSGGQKQRVGIARALANNPK
                     VLLCDEATSALDPQTTDEVLELLLDINKRLHLTIIVITHEMHVIRKICNRVAVMENGK
                     VVELGDVLDVFRHPQEKVTQRFVRQVTDSDETEELIHLLLDNYAEGKIVKLLFMSENA
                     TQPVISQVAKENDVMLNVLHGNLTQTQNGAYGTLYVQVLGTEDAINASLTQLRQLKVE
                     TEVLER"
     regulatory      complement(3973..4091)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
BASE COUNT         1321 a          825 c          717 g         1337 t
ORIGIN      
        1 tgagaatccg tccctaaaaa aatacaacgt gtcataccaa taaatgaaag ggatttttca
       61 tcctaaaaaa gggattgtat atcttattta tatatggtat tgttgtaacg taacaaaatt
      121 gcaacataat aacttttttg taataaacga ttacttattg aaggagaatt taaaatatga
      181 agaaagcaat aatggctgcg accatctttg tattgctttt agccacgtta tccgggtgta
      241 gctcccctaa atctgacttc actgccgcct tgcaaaaaac agctgaaaac cgacaatata
      301 caacaaatgt gacattccaa gtaaataacc tctcagaaag ttacataaaa aaacttggtc
      361 ctgaaatcga cttaaatcaa cttaaaaaat cgaacatcca atataaaatt tctgttgata
      421 gtgattccgc atcttcctac agcgcatctt ctattcactg gaaaggaaaa aaaccacttg
      481 atttaacaat acatgcactt caaaacagcg atgacggaaa agcttatatt cctgtatctg
      541 atttctacga cgcttctgat agcatctcca gtttattacc ggattcagca gctagaattt
      601 tcaaccaggt actagatcaa aacaaagact tggagtcgaa gtatttaaac ctattcgaaa
      661 caattcaaaa tttttccaat caaacaattg atacagaaac tgtagaccgc caagcaaaag
      721 tattgaaaaa aatggaagaa actgccggca ttgcgattta tagttatcta aacgacctag
      781 atgaccaaca cttcacttca aaagataatg gtgacatcgt cctaaaatta tctaaaaacg
      841 agattagcga tttagttaat tccgttatca ccaaacttga tgataacgga agtgttgtag
      901 cacttattgg agaaattgac ggtagcactc aaaaagcagc aaagaaaaaa tggaacaatg
      961 ctcaaaaaag tatccaatca tccttaaaag ctctaacaga aaacaaagca caaacattag
     1021 atttcaaatt aacattaact cctgacagca aaaaaggatt tagtaaagcg attatcacta
     1081 ctaattttga agataccaaa acaaaagact taatggactt cacaacaacg attgatatgc
     1141 tagactacga aaaagttcct ccaatgccaa aaggaaaaga aattgtatcc aaaaaagaat
     1201 tagataaagc catttccgat ggactgaaat tatatttaag tagcgctcaa taaaaaaatc
     1261 cttttaccga aacggtaaaa ggattttttc tattttattt atccactgga acaacagcgc
     1321 cgtcccattc tttcgtaatg taatcttgaa tttcttttga atgaagtact tttactagct
     1381 ctttaatgtt tttatcatct tttttctttt ctgttgttac aacgatattc gcataaggag
     1441 agtctttact ttcgattgca atagcgtctt tagaagggtt taagccttga tctacaacaa
     1501 agttagagtt aatcgctaca acgtcgcctt cttcgttatt gtaggcagtc atcaagtaag
     1561 ctggatcaaa atcgtatttg aatttcaagt ttttcggatt gtctttaata tcatcaaaag
     1621 ttgcatcttg tggtttcacg ccatctttca gcgttaatag tccgttatcc acaaaaatac
     1681 caataacacg cggccaatca gattttgagt tagaaagtaa aacttgcgcg ccgtctttta
     1741 gatctttaat gtctttaact tttttagagt agatacccat tggttcgatg tgaatcgcgc
     1801 caacatcagc aaatttgtag cctttttctt tttcttctag ttcaagatat ggtttatgtt
     1861 ggaagtagtt agcatctaaa tcgccttctt ctagcgcttt attaggcata acgtaatctg
     1921 tatatttaac aattttcaag tcaatccctt tatctttcaa gattggtttt gcttgttcta
     1981 agatttgggc atgtggtgta ttggacgcac ccactaccaa ttggttatcg tctttactag
     2041 atgaagcttt atctgaggag ccaccgcaag ctgtaagtac taaaactaaa cttaatgtga
     2101 aaatgaaacc aagaaccttt ttcatgaaat tctctccttt tttgcgggga ttccgcgttt
     2161 ttttatataa atttcttcat atacattggt tagcgtttgt cggttcgttt tgttaagaag
     2221 tcgccgataa actggaaaat aaagacgata attaagataa taattgtcgc aagtactgtt
     2281 acatcaggtt gtccacgttg gaacccttca agataggcag tattcccaag accgcctgcg
     2341 ccaatgacac cagccatcgc ggtaaaacca acgagcgaaa ttgctgtcac tgtgataccg
     2401 gaaataatcg ctggtaaggc ttctgggatg agcactttac caataatggt aaacatgttc
     2461 gcgcccatag atttggctgc ttcaataact cctttgtcca cttcacgaaa ggcaatttct
     2521 accatccgac cataaaacgg agcagcagag ataatcaaag ctggaagtgc cgctttcggc
     2581 ccaattacag ttccgacaag cgattttgtc atcggtaata gtaatacaat taaaataata
     2641 aaaggaatcg agcggaacac attgactaaa atggctgtaa tccagtaaag aatgcgcgct
     2701 ccggcatgtt ttttattgtt agttaaaaat agtaataatc ctaacacaat cccgagtaaa
     2761 aaaaccgcaa ataatgaaac aagcgtcatg tataatgttt cttgtgttgc gacccacatc
     2821 atttgaaaat caacatttgg aaataattct tgtaatttcg tcatcgttct aacacttccg
     2881 tttctacttt aagttgacgt agctgtgtta gactcgcatt tatcgcatct tctgtaccta
     2941 aaacttgtac ataaagcgtt ccgtatgcgc cattttgcgt ttgcgttaag ttcccgtgga
     3001 gaacatttag cataacatca ttttcttttg ctacttgaga aatgactggt tgagttgcat
     3061 tttcgctcat aaagagtaat ttaacaattt ttccttctgc ataattatcg agtaatagat
     3121 ggattaattc ttctgtttcg tctgaatcgg taacttggcg gacgaagcgc tgcgttactt
     3181 tttcttgtgg gtgacggaaa acatctaaaa catcgccgag ttcaacaact tttccgtttt
     3241 ccattactgc gacgcgatta catattttcc ggataacgtg catttcatgg gtgataacga
     3301 tgatagttaa atggaggcgt ttgttaatat ctaggaggag ttctaaaact tcatcggtag
     3361 tttgtggatc tagtgcggaa gttgcttcat cacaaagcaa tacttttggg ttgttcgcca
     3421 gcgctcttgc gataccgaca cgctgctttt gaccgccgct tagctcagat ggataggcat
     3481 tttcttttcc ttccaagcca acaaggcgga tgagttcatt tactcgaaag cgtctttttt
     3541 caccgcgaac acctgcaatt tctaatggaa acgcaatatt ttctgccaca gtgcgggacc
     3601 ataataaatt aaaatgttga aaaatcattc caatttgctg acgagctttt ctgagtttac
     3661 tgccacgaat ctggctaatg agtagattat ctacttcaac cgttccagca cttggtagtt
     3721 ccagtccgtt aaacatccgg attagcgtac ttttaccagc tccagaatat ccaactactc
     3781 caaaaatctc gccttgttca atttctaaat cgacatgatc gactgcgaga actttattgt
     3841 ttctggacgt gtattctttt acaacgtttt gtaacgtaat catctctatc accttttcta
     3901 cattctgata tacaaaaaag cctttctgct gatgagcaga aaggcagcat tttttcaaat
     3961 ggactaactt ccttctcatc tttcagaaca attagttgtt ctgcatgact tagcacctta
     4021 aacacataat gaattattgt ttaggttgct gggtttcaca gggcatttcc ctccaccact
     4081 ctggataaga tttctacata ttattaaatc acttcatttg tgactatagt gacgtttctt
     4141 gttttttcat attaccttgt ctagtagact ttgtcaataa ctttctcact tatgttaatt
//
LOCUS       DASEAA010000208         4138 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.209, whole genome shotgun sequence.
ACCESSION   DASEAA010000208 DASEAA010000000
VERSION     DASEAA010000208.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4138)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4138)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4138
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.209"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(135..1103)
                     /locus_tag="U0342_002684"
     CDS             complement(135..1103)
                     /locus_tag="U0342_002684"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465716.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2424013.1"
                     /translation="MTEQREKLLEIHNLKQYFNKGTASEVRAVDDISFDIYKGETLGL
                     VGESGCGKSTTGRTIIRLYDATGGEVIYNGKNVHARKSRKEMLEFRRKMQMIFQDPYA
                     SLNPRMKVKDIIAEGIRIHGLAKTPEETNKQVYDLLETVGLSKEHAGRYPHEFSGGQR
                     QRIGIARALAVQPEFIIADEPISALDVSIQAQVVNLLRQLQKEKNLTYLFIAHDLSMV
                     KYISDRIGVMYFGKLVELAPANDLYHAPLHPYTESLLSAIPLPDPNYERTRVRKTYDP
                     TSHNYKDGDEIKMREIAPGHFVYCSEEEEVMYKEKHAKLTAEAAAK"
     gene            complement(1100..2176)
                     /locus_tag="U0342_002685"
     CDS             complement(1100..2176)
                     /locus_tag="U0342_002685"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465717.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2424014.1"
                     /translation="MEKLLEVKDLNISFHTYAGEVKAIRGVNFDLYKGETLAIVGESG
                     SGKSVTTKSIMRLLPEGNSEIKSGQILFNGMDIAKAHEKQMQKIRGKDIAMIFQDPMT
                     SLNPTMTIGKQISEPLIKHQKISKHEAHKTALRLLQLVGIANAEERIKQYPHQFSGGM
                     RQRVVIAISLACNPQILIADEPTTALDVTIQAQILDLMKDLQKKIDTSIIFITHDLGV
                     VANVADRVAVMYGGKIVEIGTVDEIFYNPQHPYTWGLISSMPTLDTDDEELFVIPGTP
                     PDLLHPPKGDAFAARNKYAMQIDLEEEPPLFKVSDTHYAATWLLHPDAPEVTPPDAVL
                     RRQEQFAELHPGMQAVHAKGVEVE"
     gene            complement(2194..3228)
                     /locus_tag="U0342_002686"
     CDS             complement(2194..3228)
                     /locus_tag="U0342_002686"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465718.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2424015.1"
                     /translation="MAEHKIAKERFQPAHILDAEAEKINRPSLTFLQDSWLRIRKNKA
                     ALVSLIVLALVIIMAIVGPYLSQNLGPKHDINRQITENASLPPKVQGFENMPFWNGHQ
                     SIGGEDVDIYKQNNIKEGTYYWLGSDTLGRDQFARIWAGTRVSLIIAVVAALCDLIIG
                     VAYGLISGYVGGRVDNFMQRVLEVIGAIPNLVVVILMMLILEPGIVSIIIAIAMTSWI
                     TMARVVRGQVLKLKNQEFVMASMTLGESTPKILIKHLIPNISGIIIINIMFSIPSAIF
                     FEAFLSFIGLGLPAPAASLGVLVNDGYKTLQVLPYMILYPCIVLCIIMIAFNLIADGL
                     RDAFDPKMRD"
     gene            complement(3228..>4138)
                     /locus_tag="U0342_002687"
     CDS             complement(3228..>4138)
                     /locus_tag="U0342_002687"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465719.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2424016.1"
                     /translation="RVLYMLITLFIIASVTFVLMKFLPGTPYRNQEKLSDEQIHMMNE
                     KYGLNDSIPVQYLNYMTGLVKGDLGVSFQLDNRPVSEILSALIGPSVQLALEAMAFGV
                     IFGILLGVIAAMYQNRWPDYTSTFIAILGKSVPSFVFATVLQYWLGAKLQIFPVAGWG
                     TFADTILPAFALAMFPLATAARFMRTELIDVFASDYVLLAKAKGNSRTEVAVKHAIRN
                     ALIPLITVLGPLSVALMTGSLVIENIYSIPGIGSQFVSSIQTNDYPVIMGTTILFAVM
                     LVFVILVVDILYGLIDPRIRVSGGRK"
BASE COUNT         1317 a          821 c          702 g         1298 t
ORIGIN      
        1 atatgatacc cctactataa cttgtttaaa ctaaaatcac atgaaaaaaa tagctttttt
       61 atgagaattt catgagaatt ttaattttgt aaaaaaaaca tcaatcaaat tttactctga
      121 ttgatgtttt cctattattt cgcagcagct tcagcagtta gcttagcatg cttttcttta
      181 tacataactt cttcttcttc tgaacaataa acaaaatgtc caggagcaat ttcgcgcatt
      241 ttaatttcat cgccatcttt atagttatga gacgttgggt catatgtttt acgcacacga
      301 gtacgttcat aatttggatc tggcaacgga atcgcggata aaagtgattc tgtataaggg
      361 tgtagcggcg catgatacaa atcatttgct ggcgctaact ctactaattt accgaagtac
      421 attacgccaa tacgatcact aatgtattta accattgata aatcgtgggc aatgaatagg
      481 taagttagat ttttttcttt ctgcaattga cgtaataagt ttactacttg cgcttggata
      541 gatacatcta gtgcggaaat aggctcatcg gcaataatga attctggttg aacagcaagc
      601 gcacgagcga taccaatacg ttgacgttga ccgccggaaa actcatgtgg ataacggcca
      661 gcatgttctt tacttaatcc aactgtttct aacaaatcgt atacttgttt attcgtttct
      721 tcaggtgttt tagcaaggcc atgaatacga ataccttcag caatgatatc tttaactttc
      781 atacgcggat ttaaagatgc gtatggatct tggaaaatca tttgcatttt acgacggaat
      841 tcaagcattt ctttacggct tttacgtgca tgcacatttt taccattata gataacttct
      901 ccgccagtag catcgtataa acgaatgata gtacgtccag ttgtagattt accacaacca
      961 gattctccta ctaaaccaag tgtttcacct ttataaatat caaaagaaat atcatcaacc
     1021 gcgcgtactt cacttgcagt acctttgttg aagtattgtt ttagattatg aatctctaat
     1081 aatttttctc tttgttcagt cattctactt ctaccccttt cgcatggaca gcttgcatgc
     1141 caggatgaag ttccgcaaac tgctcttggc gacgtaatac agcatcaggt ggcgttactt
     1201 ctggcgcatc aggatgaagc aaccatgtag ccgcataatg tgtatcagac accttaaata
     1261 gtggtggctc ttcttcaagg tcaatttgca ttgcgtattt attacgcgca gcaaatgcgt
     1321 ccccttttgg aggatgaagt aaatcaggtg gcgtaccagg aataacaaat aattcttcat
     1381 catctgtatc caaagtaggc atagagctaa ttagtcccca tgtataagga tgttgtggat
     1441 tatagaaaat ttcatcaact gttccgattt caacaatttt accaccgtac ataacagcta
     1501 cacggtctgc aacatttgct acaacaccaa ggtcatgggt aataaagata atcgacgtat
     1561 caattttttt ctgtaagtcc ttcattaaat ctaaaatttg cgcttggata gttacatcta
     1621 gcgctgttgt tggctcatct gcaataagaa tttgtgggtt acatgcaagt gaaatcgcaa
     1681 taacaacccg ttgacgcatc ccacctgaaa attggtgagg atattgttta attctttctt
     1741 ctgcgttggc aataccaact aattgaagta aacgaagtgc tgttttatgt gcttcatgtt
     1801 tactgatttt ttggtgctta ataagtggtt cagaaatttg tttaccaatt gtcatcgtag
     1861 gatttaatga tgtcattgga tcttggaaaa tcatagctat atctttccca cgaatttttt
     1921 gcatttgttt ttcgtgagct ttagcgatat ccattccgtt aaataaaatt tggccacttt
     1981 taatttctga gttaccttct ggaagtaaac gcataatcga ttttgtcgtt actgatttac
     2041 cagaaccaga ttcgccaaca atcgctaagg tttccccttt atataagtca aaattaactc
     2101 cacgaatcgc ctttacttca ccggcatatg tgtggaatga aatatttaaa tctttaactt
     2161 ctaatagctt ttccattttt cctcacctct cttttaatcg cgcattttag gatcgaaggc
     2221 atcacgcaag ccatctgcaa ttaagttaaa tgcaatcata atgatacaaa gtacaataca
     2281 tggatacaga atcatatacg gtaatacttg taatgtttta tatccatcat ttaccaagac
     2341 accaagagac gctgctggcg ctggaagacc aagcccaata aagcttaaga aggcttcaaa
     2401 gaaaatcgca ctaggaatac taaacatgat gttaatgata ataatcccag aaatatttgg
     2461 tattaaatgt tttataagaa ttttaggagt agattcccct aaagtcatgg aagccataac
     2521 aaattcttgg tttttaagtt ttaaaacttg tcccctgact acccgggcca tcgttatcca
     2581 actcgtcatt gcgattgcta tgataataga tacaatacct ggttcgagta ttaacatcat
     2641 taaaataacc acaactaagt ttggaattgc accaataact tctaaaacac gttgcatgaa
     2701 attatctaca cggcctccaa cataaccaga aatcaaaccg taagcaaccc caattataag
     2761 gtcacaaagc gctgctacaa cagcaataat aagagataca cgtgtaccag cccaaatacg
     2821 agcaaattgg tcacgtccaa gcgtatcact acctaaccag tagtaagtac cctctttaat
     2881 attattttgt ttataaatat caacatcttc tccaccaata gattgatgac cattccagaa
     2941 aggcatattt tcaaagcctt gaacttttgg aggaagactc gcattttcag tgatttgtcg
     3001 gttaatatca tgttttggtc ctagattttg tgataaataa ggcccaacaa ttgccatgat
     3061 aataacaagt gctaatacaa ttagagaaac taaagccgct ttatttttac gaatacgaag
     3121 ccaagaatct tgcaagaaag ttaaacttgg acgattaatt ttctctgctt ctgcatccag
     3181 aatgtgtgct ggctgaaatc tttcttttgc aattttatgt tctgccatta ttttctacct
     3241 ccagacacac ggattcgagg atcaatcaat ccgtaaagaa tatccactac caagataaca
     3301 aataccaaca tgacagcaaa taaaattgta gttcccataa taactggata gtcatttgtt
     3361 tgaatagaag aaacgaattg gctaccgata ccaggaatac tataaatatt ttcaataaca
     3421 agggaaccag tcatcagtgc aactgataat ggtcctaaaa ctgtaattaa aggaataagt
     3481 gcattacgaa tcgcatgttt aactgctact tccgttctac tattcccttt cgctttggca
     3541 agtagaacat aatcagatgc aaatacatca attaactctg ttctcatgaa acgagctgct
     3601 gttgcaagcg ggaacatcgc aagtgcgaat gctggcagaa tagtatctgc aaacgtaccc
     3661 caacctgcta ctgggaaaat ttgaagtttt gctccaagcc agtattgtaa aacagtcgca
     3721 aatacgaaag atggaactga cttacctaat attgctataa atgtactcgt ataatccggc
     3781 cacctattct gatacatggc cgctattacc cctagtaaaa taccaaaaat aacaccaaaa
     3841 gccattgcct cgagtgctaa ttggacagat ggaccaatca gtgcacttaa aatctcagac
     3901 actggtctat tatcaagttg gaaggaaaca cctaagtcac cttttaccaa acctgtcata
     3961 taatttaagt attggactgg aattgaatca tttagtccat atttttcatt catcatgtga
     4021 atttgttcgt cagatagttt ctcctgatta cggtaaggcg taccaggtaa gaatttcata
     4081 agaacaaacg taaccgaagc aatgatgaat aacgttataa gcatatataa tactcttt
//
LOCUS       DASEAA010000209         3982 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.210, whole genome shotgun sequence.
ACCESSION   DASEAA010000209 DASEAA010000000
VERSION     DASEAA010000209.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3982)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3982)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3982
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.210"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            87..1973
                     /gene="oatA"
                     /locus_tag="U0342_002688"
     CDS             87..1973
                     /gene="oatA"
                     /locus_tag="U0342_002688"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidoglycan O-acetyltransferase OatA"
                     /protein_id="HEM2424017.1"
                     /translation="MKRTTRYSRKYVPSIDGLRALAVIAVIAYHLNFSWAKGGFIGVD
                     IFFVLSGYLITNILLTQWEKNQSLQLKQFWIRRFRRLIPAVYVMIVVVVIYAVFFHPE
                     ILKNLRGDAIASFFYVSNWWFIFHNVSYFDSFGLPSPLKNLWSLAIEEQFYLIWPAFL
                     LVFLKWVKNPKLLLKIVIGLGLLSAVWMTILYVPGTDPSRVYYGTDTRAFDLLAGCAL
                     AFVWPFNRLSPVVPRKSKSVLNIAGTISILCFILFTAFVSEYQPFLYRGGLLFVAILG
                     VIMIATISHPASYLSKIFSFKPLRWIGTRSYGIYLWHYPIITLTTPVLEITQPNIWRA
                     ILQVAATFIIAELSFRFIETPIRKNGFINYFKGFKDKNYFIWKNKPVGKWLSIAGVVA
                     VLAIFTLGMSNVLSVNTNAEKQQTSVKTTTSTPDEKKDDKKDKEDKATKEKEDSKETD
                     ANKANGQNQTQVPDNKNKTAATPKTMITQTVAIGDSVMLDIEPYLKEAVPNITIDGLV
                     GRQLRDAITTATGYKKFNSENSSVILELGTNGPFTEEQLNDLLDQFDKATIYLVNTRV
                     PRGWQSDVNKSIANASSRPNVTVVDWYSRSSGQSQYFAPDGVHLTKSGAQAYVAMLTS
                     VMNK"
     gene            complement(2006..3826)
                     /gene="inlK"
                     /locus_tag="U0342_002689"
     CDS             complement(2006..3826)
                     /gene="inlK"
                     /locus_tag="U0342_002689"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="class 1 internalin InlK"
                     /protein_id="HEM2424018.1"
                     /translation="MSVKSNIVKIGVCFAVLAVPVSQTTFPVFAAEQTGLKASQDNVY
                     IPDSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIEYAHNIKDLTIN
                     NIHATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI
                     NTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPKLNQLYAFS
                     QTIGGKKLINSDIKGSALTYNAEKQTLYVPFSLMTERTVNYDGYVPDFVKSTAGSDTY
                     FAMNEKQVNGNRLTITSDGLTVSDVSKADFDNLEKMEYNAKIDLSSQTYNIPDQFKNG
                     GAYNISVPIYDHYFTVDHSVNISADSGKTYIENQPVTEAEFLADIHAKTDDGSTVTSD
                     FADKVDFKTPGTYTVTLQSENNSGLKAAPVQVNVTIKEKTAITADEKITYKVDTSKTE
                     AEFLADIKAKTNDGTAITSDFATVVDLSKPGKYVVTLNAENDLQKALPVQVTVIVEKE
                     TPIPDPTPNPTPDPTPNPTPTPDPTPDPSPTPNPVIKPNVNKPEVPSHKIPSLTVNEK
                     KAKAETSKEALPKTGDSLPVAGATVGFLLISLSWFVSRKK"
BASE COUNT         1160 a          723 c          704 g         1395 t
ORIGIN      
        1 agtatggagc taaaaacaga tctctttact atctctgtct aggtttacac acacatattt
       61 acttatcaca aataggagat gttattttga aaaggactac tcgctacagt agaaaatatg
      121 ttccgagtat tgatggactt cgagcactcg cagttattgc tgtaatcgcc taccacttga
      181 attttagctg ggctaaaggt ggattcatcg gcgtagacat atttttcgtc ttatctggtt
      241 acttaattac aaatatttta ttaacacaat gggaaaaaaa tcaatcactt caattaaagc
      301 aattttggat tagacgtttt cggcgactca ttcctgctgt ttatgtaatg attgtagtcg
      361 ttgtcatcta tgccgtcttc ttccatccag aaattttaaa aaacttacgc ggcgatgcaa
      421 ttgcttcttt cttttatgta agtaactggt ggtttatttt ccacaatgtt tcttattttg
      481 attcatttgg acttccatca ccacttaaaa acttatggtc actagccatt gaagaacaat
      541 tttatttaat atggcccgct tttttactgg tatttctcaa atgggtaaaa aatccaaaac
      601 tattattaaa aatcgtcatt ggccttggcc ttctctccgc agtttggatg acgattttgt
      661 acgttcctgg gacagatcca agtcgtgttt attacggtac ggatacgaga gcatttgatt
      721 tgctagcagg ttgtgcactt gcatttgtct ggcctttcaa tcgccttagt cctgtagttc
      781 caaggaaaag taagtcagtt ctcaatattg caggaacaat cagtatttta tgttttattc
      841 tattcacagc ttttgtaagt gaatatcaac ctttcttata tcgcggtggc ttgttattcg
      901 ttgcaattct cggcgttatc atgattgcaa ctatctcaca tcccgcctct tatctaagca
      961 agattttcag ttttaaacca cttagatgga ttggaacaag gtcttacggt atttacttat
     1021 ggcattatcc aattataacg ttgacaacac ctgtactaga aattactcaa cctaatatat
     1081 ggcgagctat cctacaagtt gccgctactt ttattattgc tgagttatcg ttccgcttta
     1141 ttgaaactcc cattcgaaaa aatggtttta tcaattattt taaaggcttc aaagataaaa
     1201 actatttcat ttggaaaaat aaacctgttg gtaaatggtt gagtatcgct ggtgttgttg
     1261 ctgttttagc aatatttaca cttggtatgt caaacgttct ttccgtcaat accaatgcag
     1321 aaaaacaaca aacgtctgtt aaaacaacca cctctacacc agacgagaag aaagatgata
     1381 aaaaagacaa agaagataaa gctactaaag aaaaagaaga ctccaaagaa acggacgcaa
     1441 ataaagctaa cggacaaaac caaacacaag tgccagacaa caaaaataaa acagccgcca
     1501 cgccaaaaac aatgattaca caaacagtgg cgattggtga ttcagtcatg cttgatattg
     1561 aaccatactt gaaagaagcc gttcctaata tcacaattga tggtctagtt ggacgtcaat
     1621 taagagatgc tattacaacc gctactggct ataagaaatt caacagcgaa aatagctccg
     1681 ttattcttga acttggtaca aatggtccct tcacagaaga gcaattaaat gatttattag
     1741 atcaatttga caaagcaacg atttatttag ttaatacgcg ggttcctcgt ggttggcagt
     1801 ctgatgtaaa taaaagtatt gccaatgctt catcacgacc taatgtaact gttgttgatt
     1861 ggtattcaag atctagtggt caatctcagt actttgctcc agatggtgtt catttaacta
     1921 aatctggtgc tcaagcttat gtcgccatgt taactagcgt catgaataaa taactatccg
     1981 cccttaattg ggcggatagt tatttttatt ttttcctaga aacaaaccag cttaagctaa
     2041 ttagtaaaaa tcctactgtt gcacctgcta caggcaagga atcccctgtt ttaggtaaag
     2101 cctctttgct tgtttctgct ttagcttttt tctcatttac agttaaagat ggaattttgt
     2161 gacttggcac ttctggttta ttgacgtttg gtttgataac cggattaggt gttgggcttg
     2221 ggtccggtgt tggatctggt gttggtgttg gatttggcgt cggatctggt gttggatttg
     2281 gcgttgggtc tggtattggt gtttcttttt caacaataac cgtcacttgc actggcaaag
     2341 ctttttgtaa atcattttct gcgtttagtg taacgacata ttttcctggt ttggaaagat
     2401 caacaacagt cgcaaaatca cttgtaatcg ctgttccatc atttgttttc gctttgatat
     2461 ctgctaaaaa ttctgcttct gttttagatg tatccacctt ataagtgatt ttttcatctg
     2521 ccgtaatcgc tgtcttctct ttaattgtta cgtttacttg aactggggct gcctttaatc
     2581 cagaattatt ctcagattgt aaagtaactg tgtacgttcc aggagtcttg aaatctactt
     2641 tatcagcgaa atcacttgta acagttgatc cgtcatctgt ttttgcatga atatctgcta
     2701 aaaattctgc ttctgtcact ggttgatttt ctatatatgt ttttccactg tcagctgaga
     2761 tgtttacaga atggtcgaca gtgaagtaat gatcatagat aggtacagat atattgtacg
     2821 ccccaccatt tttaaactga tcaggaatat tataagtttg agaactcaaa tcgattttcg
     2881 cgttgtactc cattttttca agattatcaa aatctgcttt acttacatca cttactgtta
     2941 agccatcact cgtaattgtt aggcgattgc catttacttg tttctcattc attgcaaagt
     3001 aagtgtcgct gcctgcagtt gattttacga aatctggtac atagccatca taattaactg
     3061 ttcgttccgt catcaagctg aatgggacgt ataatgtttg cttttctgca ttataagtta
     3121 atgcactacc tttaatatcg gagttaatta gttttttacc ccctatagtt tgggaaaatg
     3181 catacagttg attcaattta gggaaatctt ctatacctcg ataatcatgt actccgtcaa
     3241 attgaatatt taagctctta agttctggca atgttttaag tggcatgata tccgttattg
     3301 caccattata actaaggtca atactattta ctttaggaag tgtgtttatt ttagttaaaa
     3361 tagaatcatc atgtgcactg tgcgaaatat ccagtagagt taaactcgtc agcccactta
     3421 aatttggaat tttatcggat gtaacatctt ttcccataat tcttaatcgt tcaagattac
     3481 tcaacccgct tattggatta tagtttgttg catgaatatt atttatggtt aaatctttta
     3541 tattatgggc atattcaata cctgtcaaat cagtaacatt tatattcgct aaagtaatat
     3601 atgttaatga attcatttgt gcttcagtaa tattcgctgt actcgattgt cctaataatc
     3661 catttaagta cgctttaaat gttgaatctg gaatgtacac attatcctga cttgctttta
     3721 atccagtttg ctctgcagca aataccggga atgttgtttg cgatacgggg acagcgagta
     3781 ctgcaaagca taccccaatt tttacgatat ttgattttac tgacataagt tattaccatc
     3841 tccactctgt tatattcgcc tagtaaattt taagaggtat ccttaaaaga aactttatga
     3901 tgtaattata gtctcctcag catatgagac caatagacaa aatgtgtaca aaaatggttg
     3961 aaaaagcaaa atttagtatc tt
//
LOCUS       DASEAA010000210         3948 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.211, whole genome shotgun sequence.
ACCESSION   DASEAA010000210 DASEAA010000000
VERSION     DASEAA010000210.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3948)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3948)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3948
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.211"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..681
                     /locus_tag="U0342_002690"
     CDS             <1..681
                     /locus_tag="U0342_002690"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466044.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WecB/TagA/CpsF family glycosyltransferase"
                     /protein_id="HEM2424019.1"
                     /translation="AGFVEELYMAAKNGERRFVVTANPEIVMHARTDKEFEAILGQAD
                     YIVPDGIGIIMASEKLGEPLKERVTGYDTMVGLLNKPLSCYFLGAKPEISEVVEAKVR
                     EKFPQAVVCGVHHGYFDVLESEAIAKEILVAQPDVIFVALGSPAQEKWILSQIANFTK
                     GIFIGVGGSFDVLTDSVKRAPKIWIKLRLEWVYRLLSNPSRWRRFFAIPQFMLVIRKE
                     RKRLKKGE"
     gene            682..1806
                     /gene="menC"
                     /locus_tag="U0342_002691"
     CDS             682..1806
                     /gene="menC"
                     /locus_tag="U0342_002691"
                     /EC_number="4.2.1.113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466043.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="o-succinylbenzoate synthase"
                     /protein_id="HEM2424020.1"
                     /translation="MYFQEARLIHAELPLIAPFKTSYGELNSKDFYIIELVNEEGIRG
                     YGELEAFPLPDYTEETLGTAISIIKQHLLPILAQKEIRTPEEVNQMFSWIQGNEMAKA
                     AVELAVWDAFAKNEKLSLAKMIGAKKDSITVGVSIGVQHSAEALVQLVSQYMDEGYER
                     VKLKIAPKKDIQFVKAVREKFPNLSLMADANSAYNREDFLLLKELDHFNLEMIEQPFG
                     TKDFVEHAWLQKKLKTRICLDENIRSLDDLKQAHMLGSCQAVNLKLARVGGMSEALKI
                     ARYCSDNNLLVWCGGMLEAGIGRAHNIALAARAEFTFPGDISASNRYFNEDIVSPAFV
                     LNQGKLTVPTGQGVGVALDLDVLQKYTKSTERILLNKGWS"
     gene            1814..2866
                     /locus_tag="U0342_002692"
     CDS             1814..2866
                     /locus_tag="U0342_002692"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466042.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="undecaprenyl/decaprenyl-phosphate
                     alpha-N-acetylglucosaminyl 1-phosphate transferase"
                     /protein_id="HEM2424021.1"
                     /translation="MLIWSILISFAVGIIMVPIIRKFAFRINAVDTPRERHKHTKTTA
                     TLGGLAIFISFSVGMILAPIDKSGFLPIYFGALIIITTGFIDDIFDLSPKWKMLGQIL
                     AALCVTVWGDITINFINVPFYGQVDFGYFAIPLSIIWIVAIVNALNLIDGLDGLAGGI
                     SIIALMTIAGMALLLKDVFVAPVALILVAAVAAFLIYNFPPASIFMGDTGALFLGYMI
                     AVLSLMGFKNVTFISLLVPLIILGVPLSDTFFAIVRRLKERIPISSADRSHIHHRLMA
                     LGFTEKQTVLLIYCMALLFSMTGFVFSFSTTWGAMLLLLLLIFSIEIIVEFIGLIGED
                     YRPILNLLQKIHRKRK"
     gene            complement(2904..>3948)
                     /locus_tag="U0342_002693"
     CDS             complement(2904..>3948)
                     /locus_tag="U0342_002693"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466041.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM2424022.1"
                     /translation="DDSRRSSKKYKRRRKILFWILIPVMCLVLAGVGYGTYLFSKTKL
                     AADNSYDNVRNGKASTLRTNDIEPIKDSFSILIIGVDTSSTRAENGNPRSDSLILATF
                     NVKDSRIEMTSIPRDSYVHIEDSAKDIDKYTKINAAHAYGGPELTMKTVEEEFKIPID
                     YYVRFDFDAFLKIVDALDGIDVDVPVDFTEQDSKDNAGAITLKKGPQHLNAEQALALA
                     RTRHIDSDIERGKRQQLIIKSIVSEATSISSVSKYSDIIEVVGDNMKTNLTFNQMLSI
                     AKYGMTNKIDIKSLNLKGDSNPMDGIYYYKLDESSVQSISNEFADELGIKQPFPGAAP
                     YSDESSNTTSTSN"
BASE COUNT         1158 a          597 c          858 g         1335 t
ORIGIN      
        1 gcaggatttg tggaggagct atacatggcc gcgaagaacg gggagcgtcg gtttgttgta
       61 acggctaatc cagaaattgt tatgcatgct cgtactgata aggagttcga agcaatatta
      121 gggcaagctg attatattgt acccgatggt attgggatta taatggcttc agaaaaactt
      181 ggagagcctt taaaggaacg ggttactggt tatgacacga tggttggtct attaaataag
      241 ccactaagtt gttatttttt aggagcaaaa ccggaaatta gtgaggttgt agaggccaaa
      301 gtgcgggaaa aatttccaca ggcagttgtt tgtggtgttc atcatggtta ctttgatgta
      361 ttagaaagtg aagcaattgc taaggaaata ctcgtagcac aaccagatgt gatttttgtc
      421 gctctaggtt cacctgctca agaaaaatgg attttgtctc agattgctaa ttttactaaa
      481 ggcattttta ttggtgtagg tggaagtttt gatgtcttaa cagatagtgt aaagcgcgcg
      541 ccaaaaatat ggataaaatt aaggttagaa tgggtataca ggctcctttc taatccttca
      601 agatggagac gtttttttgc aatacctcaa tttatgcttg ttattagaaa agagcgcaag
      661 cgtttgaaaa agggtgagta aatgtatttt caagaagcga gactaattca tgcagaactt
      721 cctcttattg caccatttaa aacaagttat ggtgagctaa acagtaaaga tttttatatt
      781 attgagttag tgaatgagga gggtatacgt ggttatggag agttggaagc ttttccgtta
      841 cctgactata cagaagagac tttgggcact gctatttcta ttattaaaca gcatttgttg
      901 ccaatccttg cgcagaaaga aatacgaact cctgaagagg ttaaccagat gtttagctgg
      961 attcaaggaa atgaaatggc gaaagcggct gtggagcttg ctgtttggga tgcttttgca
     1021 aaaaatgaga agctctcatt agctaaaatg attggcgcaa agaaggactc gattacggtt
     1081 ggcgtgagca ttggtgtgca gcatagtgcg gaagcgttag tccagttagt tagtcaatat
     1141 atggatgaag gctacgaaag agtgaagttg aaaatcgcac ctaagaaaga tattcaattt
     1201 gttaaagctg ttcgagaaaa atttcctaat ctaagcttga tggctgatgc gaattcagcg
     1261 tataatagag aagatttctt gttgttaaaa gaattagatc actttaattt agaaatgatt
     1321 gagcaaccat ttggaactaa ggattttgtg gagcatgctt ggttgcaaaa aaaattaaaa
     1381 acgcgtattt gtttggacga gaatattagg tcattagatg atttgaaaca ggctcatatg
     1441 ttaggaagtt gtcaggcagt taatttaaaa ttagcgcgcg ttggtggtat gtcagaggct
     1501 cttaagatag cgaggtattg tagcgataat aatttgcttg tctggtgtgg cggcatgctt
     1561 gaagctggta taggtagggc tcacaatatt gcacttgctg ctagagcgga atttactttc
     1621 ccaggagata tttctgcatc aaatcgttat tttaatgaag atattgtttc gccagcattt
     1681 gtattaaatc aaggaaaact cactgtgcca actggtcaag gggttggagt tgctttagat
     1741 ttagatgtgc tacaaaaata tactaaatca acagaaagaa ttttgctaaa taaaggatgg
     1801 agctgaaaaa atattgctaa tatggagtat attgattagc tttgcagttg gtatcattat
     1861 ggtgccgata attaggaagt ttgctttccg aattaatgcg gttgatacac cgcgtgaaag
     1921 acacaaacat acaaaaacta cagccacttt aggtggatta gctattttta taagtttttc
     1981 ggtagggatg atcttagccc caatagataa atcaggtttc ttgccaattt atttcggagc
     2041 attaattatt attacgacag gctttataga tgatatattt gatttatcac caaaatggaa
     2101 aatgttagga cagattttag ctgctctttg cgtaactgtc tggggagaca ttactattaa
     2161 ctttattaac gtcccattct acggacaagt agattttggg tattttgcga ttccattatc
     2221 gattatttgg attgttgcaa ttgtgaatgc gttaaactta attgatggat tagatggtct
     2281 cgctggtggt atttctatta ttgctttaat gaccattgca ggtatggctt tgcttttgaa
     2341 agatgttttt gttgcgccgg ttgcgttaat tcttgtagca gcagttgcgg ctttcttgat
     2401 ttataatttc ccgcctgcta gtatttttat gggagacact ggagcgttat tccttggtta
     2461 tatgattgct gttttatcac ttatgggttt taaaaacgtt actttcatct cattgttagt
     2521 accacttatt attttaggtg tacctttgtc agatactttt tttgctattg taagaagact
     2581 aaaagagcgg ataccgatat cttcagcgga tagatctcat attcaccata ggctgatggc
     2641 gctaggattt acagagaaac agacggtgtt actaatctac tgtatggcat tactattctc
     2701 tatgacgggc ttcgtatttt cgttttccac tacttgggga gcaatgttat tactgttatt
     2761 attaattttt agtattgaga ttattgttga atttattggg ttaattggtg aggattaccg
     2821 accaatctta aatttacttc aaaaaataca tcgaaaacga aaataaaaag accaacaact
     2881 atttattagt tgttggtctt tttttaatta gaagtgctag ttgtgttaga actttcgtct
     2941 gaatacggtg ctgcaccagg gaatggttgt ttaattccaa gttcatcagc aaattcattc
     3001 gaaatacttt gcacagagct ttcatcaagt ttgtagtaat aaataccgtc cattgggttg
     3061 ctatcccctt ttaagttaag ggatttaata tcaattttat ttgtcattcc atattttgcg
     3121 atagaaagca tttgattgaa agttaagttg gttttcatgt tatctccaac aacttcaatg
     3181 atatcggaat atttgcttac agaagaaatg gatgttgctt cgcttacaat agatttaatg
     3241 attagttgtt gacgtttgcc acgttcgata tcactatcga tgtgtcgtgt acgagctagt
     3301 gctaaagctt gctcagcgtt aaggtgttga ggaccttttt ttagagtgat tgcaccggcg
     3361 ttgtctttag aatcttgctc agtgaagtcc actggaacat ctacatcaat tccgtctaaa
     3421 gcatccacaa tttttaagaa tgcatcaaag tcaaaacgaa cataataatc aattggaatc
     3481 ttaaattctt cttctacggt tttcattgta agttctggac caccgtaagc atgagctgcg
     3541 ttaattttcg tgtatttatc aatgtctttg gcggaatctt caatatgaac ataagaatca
     3601 cgcggaatac tagtcatctc tatgcgtgaa tctttgacat taaatgttgc taagattagt
     3661 gaatcgcttc gagggttacc attttcggcc cgtgtagagc tggtatcaac accaataatt
     3721 aaaatagaaa aactatcttt tataggttca atgtcatttg ttcgaagtgt agaggctttt
     3781 ccgttcctta cattatcata agagttatct gctgcgagtt ttgttttact aaaaagataa
     3841 gtgccgtatc cgacacctgc aagtactaag cacattacag gaattagaat ccagaataaa
     3901 atttttcttc tacgtttgta tttcttgctg cttcttcggc tatcatca
//
LOCUS       DASEAA010000211         3903 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.212, whole genome shotgun sequence.
ACCESSION   DASEAA010000211 DASEAA010000000
VERSION     DASEAA010000211.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3903)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3903)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3903
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.212"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(69..944)
                     /locus_tag="U0342_002694"
     CDS             complement(69..944)
                     /locus_tag="U0342_002694"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465946.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cation transporter"
                     /protein_id="HEM2424023.1"
                     /translation="MNHSNLTILSVCSNFVIVVLKLIVGFFTGSVAVISEGIHSSMDL
                     FASIITFFSIRISNQPADEDHPYGHGKAENIAGTIETLLIFVAGIWIIVESVNKLVNP
                     HEIRFPALGIMVMLFGAIVNIIVSRIIKKAADEANSVAMKSNALHLYTDVFTSLGIAL
                     SLFLVYITGWLWLDPVIAILTAFYIMYEAYKLLKESFPPLMDKRLSADEEEAIKQIIL
                     AHKARFIEFHDFRSRRAGAEEYIDFHLVVSSSMTIESAHSLCDEIEAEIMNFYAKAEV
                     LIHLEPEEERVLTRI"
     gene            complement(1136..1420)
                     /locus_tag="U0342_002695"
     CDS             complement(1136..1420)
                     /locus_tag="U0342_002695"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465947.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="thioredoxin family protein"
                     /protein_id="HEM2424024.1"
                     /translation="MRTAQKNGEDFVVFFFTPMCGSCQIASRLVDVVLESDEVHTEVV
                     KVDLNYVPDIAQNLEITSVPALVKFKNGQPADLSYQLHDATAIFEFLYSE"
     gene            complement(1505..1882)
                     /gene="gcvH"
                     /locus_tag="U0342_002696"
     CDS             complement(1505..1882)
                     /gene="gcvH"
                     /locus_tag="U0342_002696"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465948.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system protein GcvH"
                     /protein_id="HEM2424025.1"
                     /translation="MSLPKDLLYTEEHEWVKADEGSYVIGITDFAQDQLGDIVFVELP
                     EVGDTVAKGDSIGSIESVKTVSDFYAPVTGKVVAVNETLEDEPELINSNPYDTGWILK
                     LEEVEEADVKALLSSDDYEKVLD"
     gene            complement(1923..2276)
                     /locus_tag="U0342_002697"
     CDS             complement(1923..2276)
                     /locus_tag="U0342_002697"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465949.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="arsenate reductase family protein"
                     /protein_id="HEM2424026.1"
                     /translation="MINFYWYPKCSTCKKAKAWLENEHVDFNEVDIKTETPTAEEIQK
                     WHEVSGLPIRRFFNTSGIKYRELGLKDKLDTLSPEEAYKLLASDGMLIKRPLTTNGKE
                     VTLGFKEEEFEATWK"
     gene            complement(2433..3608)
                     /gene="rodA"
                     /locus_tag="U0342_002698"
     CDS             complement(2433..3608)
                     /gene="rodA"
                     /locus_tag="U0342_002698"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465950.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rod shape-determining protein RodA"
                     /protein_id="HEM2424027.1"
                     /translation="MNQQNKLAGRIDYGIVLSMMLLMIISLVSIYSAQLTNNQYDANF
                     VVKQAMWFVVSTFAIIVVMQLDYDRLTKWAYYFYGLGLFLLVFVLLFGKEVKGAKSWI
                     VIPFLGNIQPSEVVKVILIVVLAKVIWDHNRTYKVHRFSYDAWLLLKIGLFTLMPLIL
                     IMLQPDLGTALVFIAIMSGMILISGITWKIIVPLFGSIAAIGTALIWMVIYHQNWLTS
                     LGFKPYQFERITTWINPENDPQGGGYQVLRAMTAIGSGQISGNGAGYDAIAIPENHND
                     FIFTIVAGDYGFIGASILLAIYFLLIYQIIRVALDVGVPFYSYICTGVVMMLMFHVLE
                     NVGMNIGLLPITGIPLPFISYGGSALLGNMMAVGLVLGIRFNFKKSMFEVKEENHAS"
     gene            complement(3684..>3903)
                     /locus_tag="U0342_002699"
     CDS             complement(3684..>3903)
                     /locus_tag="U0342_002699"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465951.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2424028.1"
                     /translation="YSYICTGVCSMILFHVLENIGMTIGLLPITGIPLLFVSYGGSSL
                     LGAFMALGLVLSARYNAPEVNLGKENRF"
BASE COUNT         1271 a          877 c          609 g         1146 t
ORIGIN      
        1 tgtcctttcc agtcttattt ctacctattg taacacttta gcaacaaatc gaatagaaag
       61 agctcggatt aaattctggt aagaacccgt tcttcttccg gctctaagtg gataaggact
      121 tccgctttag cataaaaatt cataatctct gcctcaattt cgtcacatag cgaatgagca
      181 ctttcaatcg tcatcgatga agatacaact aaatgaaaat caatatactc ttctgctcct
      241 gcccgtctcg agcgaaaatc atgaaattca ataaatcttg ctttatgagc caaaataatt
      301 tgcttgatag cctcttcttc atccgcagac aagcgtttgt ccattaatgg agggaaagac
      361 tcttttaaca atttataagc ctcatacatg atataaaacg ccgttaaaat cgcgatgaca
      421 ggatctaacc aaagccagcc ggttatgtat acaaggaaca aactaagcgc aatcccaagc
      481 gatgtgaaca cgtctgtata taaatgtaat gcattggatt tcatcgctac tgaattagct
      541 tcatcagccg cttttttgat gatacgagac acgataatat tcacgatagc gccaaaaagc
      601 attaccataa taccaagcgc cggaaaacga atttcgtgag gatttacaag tttattaact
      661 gattccacaa tgatccaaat ccccgctaca aaaataagta aagtttcaat ggttcccgca
      721 atattctctg cttttccatg tccatatgga tggtcttcat cggccggttg attagaaatc
      781 cgaatcgaga agaaagtgat gattgacgca aataagtcca tggacgagtg aatcccttcc
      841 gatatcactg ccacagaacc tgtaaaaaag ccgacaatca atttaagtac aacaataaca
      901 aaattactac acacagataa aatagtaaga ttagaatggt tcataaaaaa gcctccgata
      961 ttttatgttt cactaaaaat ttctctttat aaaacactaa tttaacaact cgaattatct
     1021 taccacaagc agccaaattg tgtctatagc aacgttttta gttaaataca gttctatatc
     1081 gggagcgaaa cttttttgct ccagggcaaa atttaacaca gaaaaaatcc ctgtattact
     1141 cactatacag gaattcaaaa atggccgttg catcatgtaa ttggtagctt aaatcggccg
     1201 gttgaccgtt cttaaattta actagcgccg ggactgatgt aatttcaaga ttttgcgcaa
     1261 tatcaggcac ataatttaaa tctactttca caacttctgt atgaacctcg tccgattcta
     1321 aaaccacatc cacaaggcgg cttgctattt gacagctacc acacattgga gtaaaaaaga
     1381 aaacaacgaa gtcctcaccg tttttttgcg ccgtccgcaa acgttctttt tcccaaattt
     1441 ccaggaaaaa cgcctcctat caaaaaagac cagcttcggt tatcccaagc cggcctccta
     1501 aaaattaatc taatactttt tcgtaatcgt cacttgataa aagagccttt acatccgctt
     1561 cttctacttc ttcaagtttt aaaatccagc ctgtatcgta tggattgcta ttaattaatt
     1621 ctggttcatc ttctaatgtt tcgttaacag caactacttt accagttact ggtgcataaa
     1681 aatcagatac tgtttttaca gactcaatgc taccaataga gtcgccttta gctacagtgt
     1741 cgccaacctc tggcaattca acaaatacga tatcccctaa ttgatcttga gcaaagtccg
     1801 taatcccaat aacataacta ccctcgtctg ctttcaccca ttcatgttct tctgtgtaca
     1861 ataagtcttt tggtaaactc attttcaaaa ctcctccttt ttcgtgcaat tatctatatt
     1921 gactatttcc aagttgcttc aaattcttct tctttgaaac caagcgtcac ttctttgccg
     1981 ttcgtagtta gtgggcgttt gattaacata ccgtctgatg caagtaactt ataagcttct
     2041 tccggcgaaa gtgtatctaa tttatctttc agtccaagtt cgcggtattt aataccactt
     2101 gtgttaaaga aacggcggat tggaagcccg cttacttcat gccatttttg tatttcttcc
     2161 gcagttggcg tttctgtctt aatatctact tcattaaaat caacatgctc attttcaagc
     2221 catgcttttg ctttcttaca ggtgctacat tttggatacc aataaaaatt aatcattttg
     2281 cctctccctc cgattgcatt ctactactat catagtgcat tttttccgaa agtacaaatg
     2341 gcaacactta gaaaaaaaca gagcatttga aagcgtattc attcttggtt ttaaaaatac
     2401 aaaagccatt ttcgacttct gtattttctt ttttaagacg cgtgattttc ttctttcact
     2461 tcaaacatcg attttttaaa gttaaacctt atcccgagca ccaggccaac agccatcatg
     2521 ttcccgagca aggcgctacc accgtaacta ataaacggaa gcgggatacc tgtaattggc
     2581 agcaaaccaa tattcatacc aacattttcc agtacgtgga acattaacat cattacaacc
     2641 cccgtacaaa tgtaagagta aaacggtacg ccaacatcca gcgccacacg aataatttga
     2701 taaattaata agaaataaat tgctaataaa atactagctc caataaagcc ataatctccg
     2761 gctacaatcg taaaaataaa gtcattgtga ttttctggaa ttgcaatggc atcatatccc
     2821 gcaccgttcc cagaaatctg accagaacca attgccgtca tcgctcgcag cacttgataa
     2881 cccccgcctt gaggatcatt ctccggatta atccacgtcg taatccgctc aaattgatag
     2941 ggtttgaagc ctagactcgt cagccaattt tggtgataaa taaccatcca aataagcgcc
     3001 gtcccaattg ccgcaatcga accaaaaagt ggcacgataa ttttccatgt aattccggaa
     3061 ataagaatca ttcccgacat aatagcgata aatacaagcg cggtccctaa atcgggttgc
     3121 agcatgataa gaataagcgg cattaatgta aataagccaa tctttaaaag taaccaagca
     3181 tcataactaa agcggtggac cttataagtt cggttatgat cccaaatcac ttttgctaaa
     3241 acgacaatta agataacctt aacaacctca gatggctgaa tgttccctaa gaacgggata
     3301 acaatccagc tctttgctcc ttttacttct ttcccaaaaa gcaatacaaa tacgagtaaa
     3361 aatagaccta gtccgtaaaa gtagtaagcc catttcgtca gacgatcata atctagttgc
     3421 atcacgacaa taattgcaaa tgtcgacact acaaaccaca tggcttgttt gaccacaaag
     3481 tttgcatcat attgattatt tgttaattgc gcactataaa tggacaccaa actgattatc
     3541 atgagtaaca tcatagatag gacaatcccg taatcaatgc gtccagctag tttattttgt
     3601 tgattcatta tttaattact ccttactggt tggtttgtat aaacaaaacg aacgctttct
     3661 cccaaacagt ttaaaaaaga aaatcagaaa cgattttctt tccctaagtt aacttctgga
     3721 gcattgtatc tcgccgataa cacgagccca agtgccataa atgcaccaag aagtgagctt
     3781 cccccataac tgacaaaaag tagcggaata ccggtaattg gaagaagacc aattgtcatc
     3841 ccgatatttt ctaaaacatg gaacaaaatc atcgagcaaa cacccgtaca aatatacgaa
     3901 taa
//
LOCUS       DASEAA010000212         3897 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.213, whole genome shotgun sequence.
ACCESSION   DASEAA010000212 DASEAA010000000
VERSION     DASEAA010000212.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3897)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3897)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3897
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.213"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            3..362
                     /locus_tag="U0342_002700"
     CDS             3..362
                     /locus_tag="U0342_002700"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464744.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424029.1"
                     /translation="MPSIRYIVKTDVAETFEIIKAGQVGSNIVFSEVRTFDFGELATL
                     ACEKFYFRSSNRAALFVTINNFHGETEVTIISTGSSNGFFTGIDWGAAFDYMHSVVAD
                     LKRVAIREVAIEKQEEI"
     gene            complement(407..1165)
                     /locus_tag="U0342_002701"
     CDS             complement(407..1165)
                     /locus_tag="U0342_002701"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464743.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA methyltransferase"
                     /protein_id="HEM2424030.1"
                     /translation="MEQIQSVKNDRVKTWKKLQTRKGRDKTGTYLVEGFHLVEEALRQ
                     DGLVLELLVSSGVSVPEEWLKGDYDVFEISTEISHLISETMTEQGVFAVVATSEPDMM
                     LLYGKKLLLVDAVQDPGNVGTLIRTADAAGYDCVVLGKGSADLYNPKVIRSTQGSHFH
                     IPVIQADLFDWIANLEEEGVPVIGAVLDDQAKSLNDMTKRDTLALMVGNEGNGISPEL
                     QDRLSEKVYIPIYGDSESLNVAVAAGILLYGLRK"
     gene            complement(1191..2270)
                     /locus_tag="U0342_002702"
     CDS             complement(1191..2270)
                     /locus_tag="U0342_002702"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464742.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M42 family metallopeptidase"
                     /protein_id="HEM2424031.1"
                     /translation="MDEQLKMLKALTDAKGIPGNERAVRNVFREYIEPLADSFETDGL
                     GSAVAKKVGAEDGPKIMIAGHLDEVGFMVTQIDDKGFIKFQTVGGWVSQVMLAQKVTI
                     VTRSGEEITGVIGSKPPHVMTAAERQKSFDIKDMFIDVGAVDKAEVESYGIRPGDMIV
                     PAFDFTVMKNEKFLLAKAWDNRIGLAIAIEVLKNLQKEQHPNIVYGVGTVQEEVGLRG
                     AKTAAHFVQPDIGFAVDVGIAGDTPGVTDKEAMSKMGEGPQIVIYDASMVAHAGLRDF
                     VTDVADELSIPYQFEAIPMGGTDSGSIHLTGNGIPSLSITIATRYIHSHSSMLHRDDF
                     ENAVKLITEVVKRLDKEKVTEIRLG"
     gene            complement(2382..3368)
                     /locus_tag="U0342_002703"
     CDS             complement(2382..3368)
                     /locus_tag="U0342_002703"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM2424032.1"
                     /translation="MTIGLGITITLFAVPIHSQAAGLEDGLTSKQEKFINEIAPHAQK
                     VQKEHGILASITISQAILESNWGESKLAKDGNNLFGIKGSYQGASIKLPTKEHNGVVW
                     VGTDAVFRAYPGWYESMNDHALLFVNGPSWNPHLYGGLIKEYDFEKAAIALGKTGYSS
                     DPEYAAKLIELIKKANLNKYDTVYSERVSDKAIKAAGEVAVKDNCYVWSAPGGTKGAK
                     PIVSTTKYFGRQVSINQEVKVTDSNISWYHIHQNGESIGWIESTSIKDFYQLEDYAPT
                     VDALLKTDDNNRLVINMDIDTSELHKTKLAKADTKEKTAFNLPLLNVQSIIW"
     gene            complement(3665..>3897)
                     /locus_tag="U0342_002704"
     CDS             complement(3665..>3897)
                     /locus_tag="U0342_002704"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2424033.1"
                     /translation="DTKSTGFGNVKKDVSGAIWTKPYGLSGALKVEEINYYKREDLKL
                     LREAKTDSGVWYQIAIDTEPIGWVKQELIDKK"
BASE COUNT         1090 a          818 c          676 g         1313 t
ORIGIN      
        1 atatgccatc cattcgctat attgttaaaa cggacgttgc agaaactttc gaaataatta
       61 aagctggtca agtgggatcg aatatcgtgt tttctgaagt tagaactttt gattttggag
      121 agcttgcaac acttgcttgc gaaaagtttt atttccgctc gtcgaatcgt gcagcacttt
      181 ttgttacgat taataatttt cacggagaaa cagaagtaac gattatctcc actggtagtt
      241 caaatggctt ttttactgga attgactggg gtgcggcatt tgattatatg cacagtgttg
      301 tagccgattt aaaacgcgtt gctattcggg aagtagctat tgaaaaacaa gaagaaatct
      361 aaaaaagtgg tgactaagtc aaaacaactt agccaccact ttttctttat tttcttaagc
      421 cgtaaagtag aattccagca gcaactgcga cattcaatga ttcactgtca ccataaattg
      481 gaatatatac tttttcagaa agacgatctt gtaattcagg agaaatgcca ttaccttcat
      541 ttccgaccat caacgctaaa gtgtcgcgtt ttgtcatgtc gtttaatgat ttcgcttggt
      601 catcaagaac tgcgccaata actggaacgc cctcttcttc taaattcgca atccaatcaa
      661 ataaatctgc ttgaataacg ggaatatgga aatgactacc ttgcgtacta cgaattactt
      721 taggattata aagatctgca cttcccttgc caagtacgac acaatcatat ccagcagcat
      781 cagccgtacg aattaacgta cctacgttgc ctggatcttg cactgcatct actagcaata
      841 attttttccc atataaaagc atcatatctg gttcagatgt tgcgactact gcaaaaacac
      901 cttgctctgt cattgtttcg ctaattaagt ggctgatttc tgtactaatt tcaaatacat
      961 cgtaatcgcc ttttaaccac tcttccggaa cagaaacacc acttgaaaca agcagctcca
     1021 gtactaaacc atcttgacgc aatgcttctt ccactaaatg aaagccttcc accaaataag
     1081 tcccggtttt atcgcggcct tttctcgttt gtagtttttt ccatgttttg acacggtcgt
     1141 tttttactga ttgaatctgt tccataaaag ttgtcctctt ttctcgaaac tcaacctaag
     1201 cgaatttctg ttactttttc tttatctaaa cgtttgacta cttcggtaat tagttttact
     1261 gcattttcaa aatcatcacg gtgtagcatc gaggaatgag aatgaatgta gcgtgttgca
     1321 atggtaatgg atagagacgg gattccgttt ccagttaagt ggatggaacc tgagtctgta
     1381 ccgcccattg ggattgcttc aaattggtaa gggatagata gttcatccgc tacatctgtg
     1441 acaaaatcac gaagtccggc atgcgctacc atagatgcat cgtaaatgac gatttgtgga
     1501 ccctcaccca ttttgctcat tgcttctttg tctgtaacgc ctggtgtatc tcctgcgata
     1561 ccaacgtcaa cggcaaaacc aatatctggt tgaacgaaat gcgcagctgt tttggcacca
     1621 cgtaaaccaa cttcttcttg aacagttcct acaccgtaaa cgatatttgg atgttgttct
     1681 ttttgtaagt ttttaagtac ttcaatcgca attgcaaggc caatacggtt atcccatgct
     1741 tttgcaagta agaatttttc gtttttcatt acggtaaagt caaaagcagg tacaatcatg
     1801 tcgcctggac gaatgccata gctctccact tcagctttat ctactgcacc gacatcaata
     1861 aacatgtctt taatatcgaa tgatttttgg cgttctgctg ctgtcatcac atgtggtggt
     1921 ttagaaccga taacacctgt gatttcttcg ccagagcgcg tcacgatagt tactttttgt
     1981 gcgagcatta cttgggaaac ccagccgccc acagtttgaa atttgataaa acctttatcg
     2041 tcaatttgcg ttaccataaa gccaacttca tctaaatggc cagcaatcat aattttaggt
     2101 ccatcttctg ctccgacttt ttttgcaaca gcacttccta agccatctgt ttcaaaacta
     2161 tccgctagcg gttcgatgta ttcgcggaac acatttctca ctgcacgttc gttaccggga
     2221 ataccttttg catctgttaa tgcttttaac atctttaatt gttcatccat ataaataacc
     2281 ctccttataa actccatttt cattataaca gtttctttct aaaaatcctt tgaaaacgca
     2341 aaaaaagccg agtaatctat tcagcttttt ttgcaaggtt attaccagat gatggattga
     2401 acgttcagta aaggtaaatt aaaggcagtt ttctctttgg tatctgcctt tgctagtttt
     2461 gttttgtgta gctcagatgt atcgatatcc atattgatta ctaaacgatt gttgtcatct
     2521 gtttttagta atgcatctac tgttggcgca tagtcttcta attgatagaa gtctttaatc
     2581 gatgtacttt caatccaacc gatggattct ccattttgat ggatatggta ccaagaaata
     2641 ttggaatctg ttacttttac ttcttgatta atagaaactt gacggccaaa gtatttggta
     2701 gtgctgacga taggtttcgc accttttgtg ccacccggag cagaccaaac atagcaatta
     2761 tctttgacag ctacttctcc agcagcctta attgctttgt ctgatacacg ttcgctataa
     2821 acggtatcgt atttatttaa atttgctttt ttgatcagtt caattaattt cgctgcatac
     2881 tctggatcag atgaatagcc tgtttttcca agggcaatag ctgccttttc aaagtcatat
     2941 tctttgatta gtcctccgta taaatgaggg ttccaagacg gtccattgac aaataaaagt
     3001 gcgtggtcat tcattgattc ataccaacct gggtacgcac ggaaaacagc atctgttcca
     3061 acccaaacaa cgccattatg ttctttggta ggtaatttaa tagaagctcc ttgataggaa
     3121 cctttaattc cgaataaatt attgccatct tttgctaatt tactttcgcc ccaattggac
     3181 tctaggattg cttgcgaaat cgtaatacta gctaaaatac catgttcttt ttgcactttt
     3241 tgagcatgcg gcgcaatctc attaataaac ttctcttgct tggaagtcaa gccgtcctct
     3301 agaccagcag cttgggagtg gattggtact gcaaataatg taattgtaat tccaagtcca
     3361 attgtcacca aatgcttctt tgcgagctgt aacataatga tttattgcac atccttcttt
     3421 gatttatcct tccagctttt gaaaaactgg aaactagtgt tctttaaaac aaccacttca
     3481 ttctatcaaa acattcttgt aatacacatt acttttacat tacttatgtt acaatatacg
     3541 ctcgtagctt tgatatagcc ctttctcaaa gttcgtattg atgaaaataa aaaagaaaaa
     3601 gagcttaaaa aggactttat gcctataaat aagacaagtc attttgctct ttttcggtta
     3661 ttttttactt tttatcgatt aattcttgtt tcacccaacc aatcggctcg gtatctattg
     3721 caatttgata ccaaacaccg ctatcggtct ttgcttcacg taaaagtttc aaatcttcac
     3781 gtttatagta gttaatttct tctactttta gcgcgccgga aagtccatat ggtttcgtcc
     3841 aaattgcgcc agatacatct tttttcacat tgccgaagcc agttgatttt gtatcat
//
LOCUS       DASEAA010000213         3855 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.214, whole genome shotgun sequence.
ACCESSION   DASEAA010000213 DASEAA010000000
VERSION     DASEAA010000213.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3855)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3855)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3855
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.214"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1957
                     /locus_tag="U0342_002705"
     CDS             <1..1957
                     /locus_tag="U0342_002705"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465753.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="penicillin-binding protein 1A"
                     /protein_id="HEM2424034.1"
                     /translation="SADIDALKKGLESATIIYDKDGDKAGELSSTDATFVSIDKISKN
                     LQNAVVSIEDRKFYEHKGFDLKGIARAGVNLVTSGGISGGGSTITQQLAKNALLTQEQ
                     TFTRKAKEIFMAREIEKTYSKDEIMEMYLNRSYFGNGEWGVENASLKYFGKSAADLNI
                     PEAATIAGLLQAPSAYDPYQHIDKATNRRNMVLNAMVETGTISKAEGDKYKATKIVLN
                     DQSKDPLANKYPWYVDAVINEAVNEADITQDEIMQKGYKIYTELDQNYQTSLENVYNN
                     DGLFPSNANDGTLVQSGAVLMDPATGGIRALVGGRGEHVFRGFNRATQMKAQPGSTMK
                     PLAVYTPALQSGYDVDSMLKDEKITYKGNYTPTNVGGVYSGEVPMYKAVANSINAPAV
                     WLLDQIGIDKGVKSVEKFGITVPEKDRTLGLALGGMSKGASPVEMATAYATFANNGAK
                     PESHIITKIVDPSGNTVYENVPKTKQIISETVSNEMTSMLLDVINTGTGQSAAVSGHE
                     MAGKTGSTQVPFDDTSGTKDQWFVGYTPNLVGAVWMGYDKTDKEHYLTTTSSAGVSSL
                     AHYVMNSGLQYQKSADFSTKSAAQETAAKKEEEEKEKNSGSDFWSGVKEKADEAGETI
                     KKGADKVKEFGGKVSDGIGNLIDSIGN"
     gene            2067..2264
                     /locus_tag="U0342_002706"
     CDS             2067..2264
                     /locus_tag="U0342_002706"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465752.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLDc N-terminal domain-containing protein"
                     /protein_id="HEM2424035.1"
                     /translation="MDKTQIALIIPVILLYLALLLTAIIDLTKNWNERKNPVIWLVVI
                     IVINIFGPIAYFIFGRKEEGN"
     gene            2264..3169
                     /locus_tag="U0342_002707"
     CDS             2264..3169
                     /locus_tag="U0342_002707"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465751.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2424036.1"
                     /translation="MKKLEIQGLKKKYNGKWVIKGIDLTINEKECVALIGPNGAGKST
                     MINMIVQILTQDEGQITLDGQNAKSVREKIGFLPQYPEFYGWMSATECLHFMGKLSNM
                     EKTDLKTRIKEVLILVGLEESANKKISTYSGGMRQRLGIAQAILHRPELLVLDEPVSA
                     LDPIGRREMMLLLDKLKKEITILFSTHILKDAEEICDRIAIIKNGELVSDKTVVQLME
                     EESSPVFDVEFSGDSEAWQTLLLQNEHVEKIERVGMVYQVYTTNQKAGSEAILKSLLQ
                     IEGEFIRVENRHQSLEEIFMEKVGK"
     gene            3166..>3855
                     /locus_tag="U0342_002708"
     CDS             3166..>3855
                     /locus_tag="U0342_002708"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465750.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease subunit"
                     /protein_id="HEM2424037.1"
                     /translation="MTHFNALLAREWLEQRRSLKIIWLPIVFALLGLTQPLMMYFLPE
                     ILKAVGTGAETEQVIALMGDQSAQEVMAQTLGSQFDQIGIIIIIVVAMACIQNDRTRG
                     MLAFIMTRPVSAAEYVLSKWVMQCMVGLSSLLIGYVLAAYYTYFLFGELAINSLTQAF
                     FVYAIWFIFVISLVVFASAVFDSNAVVAMISVFIAIVLGVISGFGGWIQMFNPAYLSK
                     NATMLIMSDKTM"
BASE COUNT         1318 a          649 c          824 g         1064 t
ORIGIN      
        1 atctgccgac atagatgcac taaaaaaagg cttagagtca gccacgatta tttatgacaa
       61 agatggcgac aaggcagggg agctttcttc cactgatgca acatttgtat ccatcgataa
      121 aatatctaaa aacttacaaa atgcagtagt ttccattgaa gatagaaaat tttatgaaca
      181 taaaggtttt gacttgaaag ggatagctcg ggcgggtgtt aatttagtca ctagcggagg
      241 catttctggt ggcggtagta cgattacaca gcaactcgcc aaaaatgctc tactgacaca
      301 agaacaaacc ttcacacgaa aagccaaaga aatatttatg gctcgtgaaa tcgaaaaaac
      361 ctactcaaaa gacgaaatta tggaaatgta cttaaaccgt tcttactttg gtaatgggga
      421 atggggagta gaaaatgctt ccttaaaata ttttggtaaa tcagcggcag acttaaacat
      481 accagaagct gcgacaattg ctggattgct tcaagctcca agtgcgtatg atccatacca
      541 acatatcgac aaagcgacta atcgccgcaa catggtatta aatgcaatgg tcgaaacagg
      601 cacaatttca aaagcagaag gcgataaata caaagctaca aaaatagttt taaatgatca
      661 atcaaaagat ccacttgcga ataaatatcc atggtacgtc gatgcagtta ttaatgaggc
      721 tgtaaatgaa gcagatataa cgcaagatga aatcatgcaa aaaggatata aaatctatac
      781 ggaattagat caaaattatc aaacttcctt agaaaatgtt tacaacaatg atgggttatt
      841 cccttctaat gcaaatgatg gcacactagt tcaatcagga gctgttttaa tggatccagc
      901 tactggaggc attagagcgc ttgttggtgg acgcggagaa catgtcttcc gtggtttcaa
      961 ccgggcgaca cagatgaaag cacaaccagg ttccacaatg aagccacttg cggtatacac
     1021 accggcgctt caatctggtt atgacgtgga ttcaatgcta aaagatgaaa aaataaccta
     1081 caaaggtaac tacacaccaa ccaatgttgg cggcgtttat agtggagaag ttccaatgta
     1141 taaagctgta gccaactcga ttaatgcccc tgccgtttgg ttacttgatc aaattggtat
     1201 tgataaaggt gtaaaatctg tcgaaaaatt tggtattaca gttccagaaa aagatagaac
     1261 gcttggactt gcactcggtg gtatgagtaa aggtgcttcg ccagtagaaa tggcaacagc
     1321 gtatgcaacc tttgctaaca atggtgccaa accggaatct catattatta ctaaaattgt
     1381 cgatccatca ggcaatacag tttacgaaaa tgttcctaaa actaaacaaa tcatttcaga
     1441 aacagtatct aatgaaatga cttccatgct tttagatgtt atcaatacag gaactggtca
     1501 aagtgcagct gtttccggtc acgaaatggc tgggaaaaca ggttccacgc aagttccatt
     1561 tgatgataca agcggtacta aagatcaatg gtttgttggc tacacgccaa acctagtcgg
     1621 agccgtttgg atgggatatg ataaaactga caaagagcat tacctaacta caaccagttc
     1681 tgctggtgtt tctagtttgg ctcactacgt aatgaatagt ggtttgcagt atcagaaatc
     1741 cgcagacttt agtacgaaga gtgctgcaca agaaactgca gcgaaaaaag aagaagaaga
     1801 aaaagagaag aacagtggta gcgacttttg gagtggcgtg aaagaaaaag ccgatgaagc
     1861 tggagaaaca atcaaaaaag gcgcagataa agtaaaagaa ttcggtggaa aagtttctga
     1921 tggcattgga aacttaatcg actcgatagg taattaaatt caaagcacat tttactatgt
     1981 taactctagt aaaatgtgct tttttgtatt gcattaatat tataactgtt atacaataag
     2041 tataacaaaa gaatgaggtg agtacattgg ataaaacgca aatcgcatta attatacccg
     2101 taattcttct ctatttagct ttattattaa cagctattat tgacttaaca aaaaactgga
     2161 atgaacgaaa aaatccggtt atctggctag ttgttattat cgttatcaac atttttggcc
     2221 caattgccta ctttattttt ggccgaaaag aggaaggtaa ctaatgaaaa aattagaaat
     2281 tcaaggacta aagaaaaaat ataatggcaa gtgggtcatt aaaggaattg atctcacaat
     2341 caatgaaaaa gaatgcgtgg cacttatcgg gcctaatggt gcagggaagt caaccatgat
     2401 taatatgatt gtccaaatct taacgcagga tgaaggacaa attactttag acggtcaaaa
     2461 tgcaaaatca gttcgcgaaa aaattggttt tttaccgcaa tatcctgaat tttatggttg
     2521 gatgagtgcg acagaatgcc ttcattttat gggaaagcta tctaacatgg aaaaaacaga
     2581 tttaaaaaca cggattaaag aagtattaat actagtaggc ttagaagaga gtgcaaataa
     2641 aaaaattagc acgtattcag gtggaatgcg acaacgactc gggattgctc aagctatttt
     2701 gcatcgacca gaacttcttg tactagatga accagtatcc gcccttgatc ccatcggtcg
     2761 ccgggaaatg atgttgctat tagacaaact aaaaaaagag attactatcc tattttccac
     2821 acatatctta aaagatgctg aagaaatttg tgaccggatt gccatcatta aaaatggcga
     2881 actggtctca gataagacag tagtccaact tatggaagaa gaaagctccc ctgtgtttga
     2941 tgtcgaattt agcggagata gtgaagcttg gcaaacgtta ctgcttcaaa atgaacatgt
     3001 ggagaaaatt gaaagagttg gaatggttta tcaagtttac acaactaacc aaaaagctgg
     3061 gtcagaagct attttgaaat ctttattaca aatagaaggt gaatttattc gtgtcgaaaa
     3121 cagacaccaa agcttagagg aaatctttat ggagaaggtg ggcaaatgac acattttaat
     3181 gctttattag caagagaatg gctggaacaa cgtcgaagtt taaaaattat ttggcttccg
     3241 attgtattcg cacttcttgg cctcactcaa ccactaatga tgtatttttt accagaaatt
     3301 ctaaaagcag ttggcacggg agcggaaacg gagcaagtaa ttgcattaat gggggatcaa
     3361 tcggctcagg aagtgatggc acaaacactc ggttcccagt ttgatcaaat tggcattatc
     3421 attatcatcg ttgttgcgat ggcttgcatt caaaatgacc gaactagagg catgttagcg
     3481 tttatcatga caagaccagt gagcgctgcg gaatatgttt tatcgaaatg ggtaatgcaa
     3541 tgtatggtgg ggttaagttc acttttaatt ggctatgtgt tggcggctta ttatacgtac
     3601 tttttatttg gagaactagc gatcaattct ttaacgcagg cattttttgt gtacgccatc
     3661 tggtttattt tcgtaattag cttggttgtt tttgcgagcg cggtttttga tagtaatgcc
     3721 gttgttgcga tgattagcgt gtttatagca attgttttag gggtaatcag tggttttggc
     3781 ggctggattc aaatgtttaa tccagcatat ctaagtaaaa atgcaacaat gctaattatg
     3841 tctgataaga cgatg
//
LOCUS       DASEAA010000214         3846 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.215, whole genome shotgun sequence.
ACCESSION   DASEAA010000214 DASEAA010000000
VERSION     DASEAA010000214.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3846
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.215"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..834
                     /gene="lplA1"
                     /locus_tag="U0342_002709"
     CDS             <1..834
                     /gene="lplA1"
                     /locus_tag="U0342_002709"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464456.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lipoate protein ligase LplA1"
                     /protein_id="HEM2424038.1"
                     /translation="DTEYVEKNDVIVVRRLSGGGAVYHDEGNLNFSFITEDDGESFHN
                     FAKFTQPIVEALKRLGVNAELKGRNDLLIDGLKVSGNAQFATKGKMFSHGTLMYDLNL
                     DNVAASLKPRKDKIESKGIKSVRSRVANISDFMDQEMTTEEFRDLLLLYIFNVEKVED
                     VKEYKLTAADWEKIHEISAKRYGNWDWNYGKSPKFDLTRTKRFPVGAVDVRLNVQKGI
                     ITDIKIFGDFFGVKNVADIEEKLVNTTYKREALDEALADIDVKEYFGNITKDEFLDLL
                     Y"
     gene            complement(874..1479)
                     /locus_tag="U0342_002710"
     CDS             complement(874..1479)
                     /locus_tag="U0342_002710"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464457.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TVP38/TMEM64 family protein"
                     /protein_id="HEM2424039.1"
                     /translation="MTFWQDMMNFFSYDNLMYWLSEYRNLGPLLAFLLPFIEAFLPFL
                     PFIVFVVVNVNAYGLLGGFLISVTAAIAGSLCVFLLARKFGQTRFLRFISGHKQIKRV
                     MEWIDRHGFSPIFILLVMPFTPSSAVNIVAGLSKIKVYQFILALVGGKLIKVFAISYI
                     GYDFVDLIHQPLKLAILAVSVVILWFVGKRLEHWMSGKNLK"
     gene            complement(1606..3663)
                     /locus_tag="U0342_002711"
     CDS             complement(1606..3663)
                     /locus_tag="U0342_002711"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014589031.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 39 protein"
                     /protein_id="HEM2424040.1"
                     /translation="MKKRIQHLDFYFVGIIVIAIFFNFYGIWNDDTVNPYYTAAVTSM
                     VQNIHNFFYGAFDPAGFITVDKPPVALWLQAISALIFGIHGWSVILPQALAGVGSVIL
                     LYVLVKPRFGAWAARITALIMALTPIAVAVTRTNNMDAILVFVLLLATFFLFKAVHRA
                     KIGWLLLSFALIGVGFNVKMLQAFMVVPAFLLFYFIATKLSWRKKLVQLVIALVLMLG
                     VSVSWAVVVDQTAASERPYIGSSQTNSVLELAFGYNGMERLLGQETGTGSNGNVEMGT
                     PPSTNSTDSSNATPPTPPSGSMQDGANGGTPPQGNNGAPPTGAPSNAANGGGNGSKMT
                     GSTGMFGTGNAGPLRLFQTALGDQISWFLPLAIIGMLAIFLVYRNENKRIYQLTSRQK
                     EIVFWAAWLIPVAGFFSIAGFFHHYYLIMLAPPIALLSGVGLVALFRLYQDKENWQRF
                     LLPAAVTLTGGLQAFFVAAYLPVLAVVIGIAALITSIILIVLRPQPSKLTAKITALAL
                     AILLIAPTYWSLTPILYGGNSSLPEAGPQLKQSSGGGFADASVDSDLISYLQKNNTGE
                     TYLFGTTDATTAGPYIIKTKEAVMALGGFNGTDPTLTVKQLKQMIQAGEIKYFYLPSN
                     SKASDSDVVKWIQENGTEIDSSKWSSSGSTDDDTTSSASFNMQGGAQGMNGTGTGTLY
                     QLK"
BASE COUNT         1316 a          739 c          720 g         1071 t
ORIGIN      
        1 gatacagagt atgtggagaa aaatgatgtc atcgtagtgc gcagactttc tggcggcggc
       61 gctgtttatc atgatgaagg aaacttaaat ttcagtttta tcacggaaga tgatggcgag
      121 tctttccata attttgcgaa attcacgcaa ccaatcgtgg aagcgctgaa acgtttaggc
      181 gtcaatgcgg aactaaaagg gcgtaacgac ttattgattg atggtttaaa agtttctgga
      241 aatgcgcaat ttgcaacgaa agggaaaatg ttctcacacg ggacattaat gtatgatttg
      301 aacctagata atgttgctgc atcgctaaaa ccacgtaaag ataaaatcga atcaaaagga
      361 attaagtctg ttcgtagtcg tgtagcgaat atttctgatt tcatggatca agaaatgaca
      421 acggaagagt ttcgcgattt gctattactt tatattttca atgttgaaaa agtagaagac
      481 gtaaaagaat ataaattaac tgctgcagat tgggaaaaaa tccacgaaat ctctgctaaa
      541 cgttatggta attgggactg gaactacgga aaatctccaa aattcgattt aacacgaaca
      601 aaacgttttc cagtaggagc agtcgatgtt cgcttaaatg tacaaaaagg gattattaca
      661 gatatcaaga ttttcggaga cttcttcggc gtaaaaaatg tggcggatat tgaggagaaa
      721 ttagtcaata caacttataa gcgcgaagca ttggacgagg ctttagcaga tatagacgta
      781 aaagaatact ttggtaacat tacgaaagat gaatttttag atttacttta ttaaaaaaat
      841 ggaaagtacg catcccgcgt gctttccatt tttttatttg agattttttc ctgacatcca
      901 atgttccagc cgttttccaa caaaccataa aataacgaca gaaacagcta atatagccag
      961 tttgagcggc tggtgaatca agtcgacaaa gtcatagcca atatagctaa tggcgaagac
     1021 tttgattagt ttgccaccta caagcgctaa tataaattga tatactttta ttttagagag
     1081 acctgcaaca atatttaccg ccgaagatgg ggtaaatggc attacaagta aaatgaaaat
     1141 cggactaaaa ccatgtctat caatccattc cattactcgt ttaatttgtt tatggcccga
     1201 aataaaacgt aaaaaacgag tttgaccaaa tttccgtgct aacaaaaata cgcacaaact
     1261 accagcaatt gctgctgtca ccgaaattaa aaaaccacca agtagtccgt atgcatttac
     1321 gttcactaca acgaaaacta taaatggtaa aaatggtaaa aacgcttcaa taaaaggtaa
     1381 gagaaaagct aaaagtggac ctaaattccg atactcactt agccagtaca ttaaattatc
     1441 ataagaaaag aaattcatca tatcctgcca aaatgtcata agcaagcctc cagtagtctt
     1501 taacaacata cttattttct cacatcaaaa tgataaagcg ctaataaaac agcttgaata
     1561 tagttaaaat cctagtattt taaccaggat tttaacattt cttctttatt ttaattgata
     1621 tagtgttcct gtaccagtgc cattcattcc ttgagcgcca ccttgcatat taaaagaagc
     1681 gctagaagtg gtgtcatcat ccgtagaacc ggagctactc cacttcgaac tatcaatttc
     1741 tgtaccgttt tcttgaatcc attttaccac atctgagtca gaagctttac tatttgatgg
     1801 gagatagaaa tattttattt caccggcttg aatcatttgt tttaattgtt ttacagttag
     1861 agttggatct gttccattga aaccaccaag tgccataaca gcttctttcg ttttaataat
     1921 ataaggacct gctgttgttg catctgttgt cccaaataag taggtttctc cggtattgtt
     1981 tttctgtaaa tagctaatta aatcactatc aacagatgca tcggcgaatc caccaccact
     2041 agattgtttt aattgtggtc cagcttcggg taaggaacta ttcccaccat ataaaatagg
     2101 tgttaaagac caatatgttg gagcaatgag caaaatcgct aaagcgagcg ctgttatttt
     2161 cgcggtgagt ttggaaggtt gtggtctaag tacaattaag ataatagacg taattagtgc
     2221 agcaatacca ataactaccg ctaaaacagg caagtaagca gcaacaaaga atgcttgtag
     2281 acctccagtt agcgtaactg cagcaggtag caggaacctt tgccaattct ctttgtcttg
     2341 gtataaccga aagagcgcca ctagacctac gccactaagt aaagcaattg gcggagctag
     2401 cataatcaaa taataatgat ggaaaaagcc agcgatacta aagaatccgg cgacagggat
     2461 aagccaagct gcccagaaaa ctatttcctt ttgtctggag gtcaattgat aaattcgttt
     2521 attttcattt cgatacacca ggaaaatggc tagcataccg ataatagcaa gtggtaagaa
     2581 ccaactaatt tgatcaccaa gtgcggtttg gaatagacga agtggtccag cgttccctgt
     2641 tccaaacatg cctgtgctac cagtcatttt tgatccattc ccgccgccgt ttgccgcatt
     2701 actgggagct ccagttggag gagcgccatt atttccttga ggaggagttc cgccgttagc
     2761 accgtcctgc atacttccac ttggaggagt cggtggggtt gcgttacttg aatctgttga
     2821 gttagtgcta ggaggagtcc ccatttccac attaccatta ctacctgttc cagtttcttg
     2881 accaagaagc cgttccatac cattatagcc aaatgccaac tcaagcaccg aattggtttg
     2941 actactaccg atataaggtc gctctgaagc agctgtttga tcaactacga ctgcccaaga
     3001 aacagagaca cctagcatta agacaagtgc gattactaat tgaactagct tttttctcca
     3061 acttagtttt gtagcaataa aatagaagag caaaaatgcg ggcacgacca tgaaagcttg
     3121 gagcattttt acattaaaac cgacaccaat caacgcaaaa gaaagtaaaa gccagccgat
     3181 ttttgcacga tgaacagctt taaaaaggaa aaaggttgct agtaataaca caaatacaag
     3241 aatagcatcc atattattag tacgcgtcac ggctaccgca ataggagtca gcgccataat
     3301 caaagcagta attcttgcag cccatgcgcc aaatctaggt ttgacgagca cataaagcaa
     3361 aatcaccgaa ccaacaccag ccaacgcttg tggtaagata acactccaac catgtatgcc
     3421 gaaaataagg gcactgatcg cttgcaacca aagtgcaaca ggtggcttat ctaccgtaat
     3481 aaaaccagca ggatcaaaag ctccgtagaa aaaattatga atattttgca ccatacttgt
     3541 cacagcagct gtataataag gatttaccgt atcatcattc caaataccat aaaaattaaa
     3601 aaagatggca ataacaataa ttccaacaaa ataaaaatct aaatgttgta tccgtttctt
     3661 catattcttc acttctttcc ataagataat accttttatt ttagagttca aatatgaaaa
     3721 aaacgtgaat aaatttagaa ataaacgagg tatttatttt ttacaaagaa attccagaaa
     3781 aagtcttgtc aaaactaaca tagaatggta ttatataaaa gttgttaaaa cactaagaac
     3841 tactta
//
LOCUS       DASEAA010000215         3843 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.216, whole genome shotgun sequence.
ACCESSION   DASEAA010000215 DASEAA010000000
VERSION     DASEAA010000215.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3843)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3843)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3843
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.216"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..622
                     /locus_tag="U0342_002712"
     CDS             <1..622
                     /locus_tag="U0342_002712"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464267.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424041.1"
                     /translation="EFPDYYKYVTKKTYTVNEKIIFEDEKAKSIFFIVEGYAAVELED
                     NLRKTNYISIFVLPYNVLGIDAFSSYPKKKHSITVMSEHLMLYKIDADFLLNILSIKP
                     DVNDFLLTSIADVFARHYALLGMIAKTPKERIYMALENLAVEMGTEDEERNEIVLPNF
                     INQSVLARYCRTTQPNISNLLTELVEEEFLVNKKSPYRIDKDSLDI"
     gene            complement(636..944)
                     /locus_tag="U0342_002713"
                     /pseudo
     CDS             complement(636..944)
                     /locus_tag="U0342_002713"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464266.1"
                     /note="internal stop; incomplete; partial in the middle of
                     a contig; missing N-terminus; Derived by automated
                     computational analysis using gene prediction method:
                     Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 1 protein"
     gene            complement(1009..1518)
                     /locus_tag="U0342_002714"
     CDS             complement(1009..1518)
                     /locus_tag="U0342_002714"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464260.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2424042.1"
                     /translation="MLNENIKAIRKSKGLSQEEIAIKLNVVRQTISKWEQGLSVPDSD
                     MLISISEVLETPVSTLLGETVMVSKVDDVKAISEKLEIINLQLAQRKTARRKMLYWLF
                     VSLCAVIAIISSVFIILNSPYLGWDYSDPETSVIGVAFHTFEWLFVRLAPIILIGGVV
                     GIFLTRKNV"
     gene            complement(1795..3699)
                     /locus_tag="U0342_002715"
     CDS             complement(1795..3699)
                     /locus_tag="U0342_002715"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464259.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2424043.1"
                     /translation="MKKAFLCLSAVVLSLNFVWVNPLSGLASKIETTKLKSTMDTNQQ
                     VNLKNNATDIVTSEDLGGQTWLINEVNRQLAPKKVGVDLTFDDLAKIKIISLSNKSLT
                     GEVPPEIKNLVSLEKLLLYSNKLSGEIPAELGELTNLSELRLDYNQFTGKIPDGLGKI
                     SSIALQNNELVGQIPLSLYENRTGTNEVNVSGNQVTINSREPEPSIYSYSTFIYPATT
                     PQYSGHLTATTTYFSNVTNDTLLTPFLSGSSTFIDLHAEFMLDRELFEGHEVTITDES
                     SGKILYEGELNSDISISLKSFSSGYHNIRVVLDNAPNNPQNQVTFGISMASTVAGDLT
                     VNYVDEDGKTIHDPQIVSGFVGDDYDVTTPDYELVIDGYELDTSKLPTNGMGTFDYAP
                     LSVTYVYKKMEGAPVTVKYVDENGNEITTSDTLTGKLDDSYHAKAKEITGFTLDNSKL
                     PVNASGVFETNPQTVTYVYNAVPAKIKAHDSTIYVGDTWSAEDNFDSAVNSVGAAVSF
                     DDVKVEGKVDTTKAGVYPVTYSFSGEAVTINVTVKAKVIPAPPVTPVQPINPDQPNIP
                     NTPSVDQTHVAKPGNLKVTKTQPTVAGKIKLPTTGDNLWDSVLYSVFGLIAVCVAFSL
                     FFWRKKQKHS"
BASE COUNT         1169 a          748 c          622 g         1304 t
ORIGIN      
        1 agaatttcca gactactata aatatgtaac gaagaaaacc tataccgtaa atgaaaaaat
       61 aatttttgaa gatgaaaaag cgaaaagtat cttttttatc gtggaaggtt atgctgcagt
      121 tgaattagag gataatttaa gaaaaacgaa ctacatttcc atctttgttc ttccatataa
      181 tgttttagga attgatgcat tttcctctta tccgaaaaaa aagcatagta ttacggtcat
      241 gagtgaacat ttgatgctct ataaaataga tgctgacttt ttactcaaca tattatcgat
      301 taaacctgat gtaaatgatt ttctcttaac aagtattgct gacgtttttg ctcgtcacta
      361 tgcgcttctt ggtatgattg caaaaacgcc gaaagaacgg atttacatgg ctttagaaaa
      421 tcttgcggta gagatgggca ctgaagatga agaaagaaat gaaattgtat taccaaactt
      481 tatcaatcag tcagttcttg caagatattg ccgcacaacg cagccaaaca tatccaattt
      541 actaaccgaa cttgtagaag aagaattttt ggtcaacaaa aaaagccctt accggattga
      601 taaggactct ttggatatat gagattgata ttaatttaat aacttaaatc atttccatta
      661 gtttcaatta cttttttata ccaatagaaa cttttcttct tcaaacgttt atagctatta
      721 tctttatcaa catcaacaaa gccatatctt ttctcgaaac cttcacgtgt tgaataaaga
      781 gctattattc actaaattag ataaacgttt atgtcacaac cttcttcaat ggcttcttgc
      841 atacgcgcaa tatgtgaggc caaataatca attcggtacg tagaatcaat tgtctagccc
      901 cgttcggttg tttgacaata tgggtttggt gctttgattc cgttcctttt tacaaacagt
      961 aattttgaag tctgactcat ccctaaaagc atccaagata gtacgctttt atacgttctt
     1021 ccgcgttaaa aaaatcccaa cgactcctcc tataaggata atcggtgcta accggacaaa
     1081 caaccattca aatgtatgaa aagctactcc gataacgcta gtttcagggt cactataatc
     1141 ccaacctaag taaggactat ttagtattat aaagaccgaa gaaattattg ctataacggc
     1201 acacaacgag acaaatagcc aataaagcat ttttcgtctg gcggtctttc tttgtgcaag
     1261 ctgtaagttt ataatctcca gtttttcgga gatcgctttt acgtcatcaa cctttgaaac
     1321 cataacagtt tctccaagca aagtgcttac tggtgtttca agcacttccg atatggagat
     1381 taacatatca gaatcaggaa ctgacaatcc ttgctcccat ttagagattg tttgtcgcac
     1441 cacattcagt ttgatggcaa tttcttcttg cgaaagtcct tttgatttcc tgattgcttt
     1501 aatattttcg tttaacatta gagataccca cctttcttcc agttgttatc actattgtat
     1561 gagaactcgt ccattgctac aagcaacgca tattaacatt caaactttat agccacgata
     1621 tgcagttttg tatttactat cacatccata gtacctttca atcataaaaa tattattttg
     1681 ctttctttaa ttcagaatag gacgtaaagt tattttttgc tggtataccg tttttagttg
     1741 gtatctcttt agcacattac ccttttaaaa taggcagcct agttctaata tatttcagct
     1801 atgcttttgc tttttacgcc agaagaataa actaaatgcg acacatactg ctattaaacc
     1861 aaatacacta tacagcacac tatcccaaag attatcccct gtagttggta gttttatttt
     1921 tcctgctact gtaggttgtg tctttgttac ctttaaattt ccaggttttg caacgtgagt
     1981 ctgatctacg ctaggtgtat ttggaatgtt tggttggtct ggattaattg gttgaacagg
     2041 tgttactggt ggtgctggaa taactttagc ttttacagtt acattaatag tcacagcttc
     2101 cccggaaaaa ctataagtaa ccggataaac acctgctttt gtcgtgtcta ctttcccttc
     2161 tacttttaca tcatcaaagg aaactgcagc tccaacagaa tttactgcgc tatcaaaatt
     2221 atcctctgcg ctccatgtat ctcctacgta aatcgtggaa tcatgcgctt taatttttgc
     2281 aggtactgca ttatacacgt aggtgactgt ttgtggattt gtttcaaaaa cgccgcttgc
     2341 attgactggt agcttactat tatctaatgt aaatccagta atttctttcg cttttgcgtg
     2401 ataagaatca tctagttttc cggtcaaagt gtcagaagta gtgatttcgt tgccgttttc
     2461 atctacgtat tttactgtga caggtgcgcc ttccattttt ttatagacat acgtgacaga
     2521 tagtggcgcg tagtcaaaag tgcccatccc attggttggt aatttggaag tatctaattc
     2581 gtacccatca attactaatt cgtagtcagg cgttgttaca tcataatcat cacctacaaa
     2641 tccactaact atctgtggat catgaatcgt ttttccatct tcatctacat agttaactgt
     2701 caaatcacca gccaccgtac ttgccatgct gataccaaaa gttacttggt tttgtgggtt
     2761 gttcggcgca ttatcaagta caactcgaat attatgatag cctgagctga aacttttcaa
     2821 agaaatacta atgtcagaat ttaactcacc ttcgtaaagt attttaccag aagactcatc
     2881 tgtaattgtt acctcatgac cttcaaaaag ttccctatct aacataaact ccgcatgcaa
     2941 atcaataaaa gtagaactgc cagaaagaaa aggagtaagc aatgtatcat tcgttacgtt
     3001 gctaaaataa gtggttgttg ccgtcaaatg cccactatat tgaggtgtag tcgctggata
     3061 aataaaagtt gagtaggagt aaatacttgg ttccggctct ctactattaa tggtcacttg
     3121 gttacctgat acatttactt catttgttcc tgttcgattt tcgtataagc tcaaaggaat
     3181 ttggccaacc agttcgttgt tctgtaacgc aattgacgaa atctttccaa gtccatcagg
     3241 aatttttcca gtgaattgat tgtagtctaa tcgaagttct gataaattcg ttaattcccc
     3301 taattcagca ggaatctctc ctgatagctt attagaatat aaaagcaatt tttcaagaga
     3361 tactaaattt ttaatctccg gtggtacttc accagtaagc gatttattac tcaatgaaat
     3421 gatcttaatt ttagccaaat cgtcaaatgt taaatccaca ccgacctttt taggcgctaa
     3481 ttgtctgttt acttcattaa tcaaccacgt ctgccctcct aaatcttccg aagtaacaat
     3541 atcggttgca ttatttttca aattaacttg ttggtttgta tccattgttg atttcaattt
     3601 tgttgtttcg attttggatg ccaacccaga aagtgggtta acccacacaa aatttaatga
     3661 caaaacaaca gcggataggc atagaaacgc ttttttcatt cgtgtataac ctccagtaat
     3721 atttattact cctaaaatta tacgctaaac agccactcaa aaacgccttc ctaagtagca
     3781 aaatttccta tttatgaaca tttcttgaac gttttatatc acaaaaacag tatttcattc
     3841 cat
//
LOCUS       DASEAA010000216         3819 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.217, whole genome shotgun sequence.
ACCESSION   DASEAA010000216 DASEAA010000000
VERSION     DASEAA010000216.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3819
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.217"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            105..764
                     /locus_tag="U0342_002716"
     CDS             105..764
                     /locus_tag="U0342_002716"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465490.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-bromo-4-chloroindolyl phosphate hydrolysis
                     family protein"
                     /protein_id="HEM2424044.1"
                     /translation="MTVFKKILAFTGSIFLVMLLAGILTSLIHSGLVIAAIVIAVAAI
                     LFFFSSKAGDRAQMIATGLTKKEYKYIRTNLEEARVKIIRLQKIMTQNKALYSFQERN
                     KTLLLTKRIYGIVKDEPKRFYEAEDFFFSHLDSLVELTEKYAFLEKQPVKDKKIYQTL
                     SDTRTLLNDLSRVIEKDLFTLLNQDVNNLDFELEVAKNSISKQKKKFERGTKDDREQA
                     K"
     gene            742..1941
                     /locus_tag="U0342_002717"
     CDS             742..1941
                     /locus_tag="U0342_002717"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465491.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxic anion resistance protein"
                     /protein_id="HEM2424045.1"
                     /translation="MTENKPSEETNELKDLVVEKEFNQTLDDLLANPFGSDGESAASI
                     VNNETDAAPRLVDMLTETNKKQALELSKQIEPGNQAAILGYGAPAQAKLHDFSHSMLA
                     HVQKQDVGPIGDIISDLMYRLQEADPDELAARNKNVFTKMFHRVKQSINEITSKYQKI
                     GTQIDRIALKLEHSKKRLMEDNSFLEQLYDKNKDYFQALNIYIAAGELKLEEINTKML
                     PELRKKAEQTGDQMDYQEVNDLTQFADRLDKRVYDLRLSRQITIQQAPQIRLIQNTNQ
                     ALAEKIQSSIMTAIPLWKNQVAIALTLLRQQQAVAAQRQVSETTNELLKRNADMLKTN
                     AIETARENERGIVDIETLKETQSSLIETLQETLKIQQEGRAKRAVAEKELVTMEQELK
                     ERLLEMK"
     gene            complement(1978..3048)
                     /gene="dinB"
                     /locus_tag="U0342_002718"
     CDS             complement(1978..3048)
                     /gene="dinB"
                     /locus_tag="U0342_002718"
                     /EC_number="2.7.7.7"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465499.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA polymerase IV"
                     /protein_id="HEM2424046.1"
                     /translation="MDTSRKIIHIDMDAFYASVEQRDHPEFRGKPLIIGGDPNKRGVV
                     ATCSYEARKFGVHSAMPTRQAAKLCPNGIFIHGNMAHYVEVSNQIREIFSRYTDIIEP
                     LSLDEAYLDVTENKKGMKSATMVAREIQQTIYQELGLTASAGVSFNKFIAKIASDFKK
                     PAGITVVTPEEAEAFLEQIPVTKFYGVGKVTAEKLHRLGIETGADLKKWSEWDLIREL
                     HKHGYHLYRHVRGRSNNIVNPHRDRKSVGKETTFEFNVLDSRVLEQSLMQFAKKVEER
                     LIKLQKHGKTVVLKLRYSDFTTITKRLTLNEYTNDASQIYQAAALLLRESYTGQDSIR
                     LIGLTVTNLKPVYFENLRLEGL"
     gene            complement(3157..>3819)
                     /locus_tag="U0342_002719"
     CDS             complement(3157..>3819)
                     /locus_tag="U0342_002719"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2424047.1"
                     /translation="LIELQKDIHDNFSVEATYFTLDMTDFEQVKQVSAEINASYQIDV
                     LVNCAGFGLFENAVDIPFETIEKMFDTNVLGLIQLTQLILPQMQARKAGHIINIASQA
                     AKIATPKSTVYSATKYAVLGFSNALRLELMPDKIHVTTINPGPIATNFFDVADKSGNY
                     LETVGKLVLKPEKVARKTVQIMGTKRREINLPFVMNIATRLYQVMPQVIEFFGKGAFL
                     KK"
BASE COUNT         1281 a          752 c          660 g         1126 t
ORIGIN      
        1 atatacttaa atggtaggtt aatttccatc aatctttatt ttagaaaaat ttactataag
       61 aaaagcggac cttttaaaca ggtacttaaa ggagaagatg tataatgacc gtttttaaaa
      121 agatattagc attcacaggt tccattttcc ttgtcatgct tttggctggt atcctcactt
      181 cactaatcca tagtggtttg gtaattgcag caattgttat cgctgttgcg gctatcctat
      241 ttttcttttc atctaaagct ggggaccgtg cgcaaatgat tgcaactgga ttaaccaaga
      301 aagaatataa atatattcgc actaacttag aagaggcacg tgtgaaaatt atccgccttc
      361 aaaaaatcat gactcaaaac aaagcgttat attctttcca agagcgtaac aaaacacttt
      421 tacttacaaa aagaatttat ggcattgtaa aagatgagcc aaaacgtttt tatgaagcag
      481 aagatttctt tttctcccat cttgactctt tagtggagct aacagaaaaa tatgctttct
      541 tagaaaaaca acccgtaaaa gacaaaaaaa tctatcaaac actttctgat acgcgcacac
      601 ttttaaatga tttaagtcgt gttattgaaa aggatttatt tacacttttg aatcaagatg
      661 tgaacaacct tgacttcgaa ctagaagtag cgaaaaactc catttctaaa cagaaaaaga
      721 aatttgaaag gggtacaaaa gatgaccgag aacaagccaa gtgaagaaac aaatgaatta
      781 aaagatttag tagttgagaa agaattcaac caaacgttag atgatctcct tgctaacccg
      841 tttggatcag atggtgaatc agctgcaagt atcgtaaata atgaaacaga tgcagctcct
      901 cgccttgtcg atatgcttac tgaaacaaat aaaaaacaag cattagagtt atccaaacaa
      961 atcgaacctg gaaatcaagc agcgattctt ggatacggag ctccagccca agccaaactc
     1021 cacgattttt ctcattcaat gttagcacat gtacaaaagc aagatgttgg accaattggc
     1081 gatattatta gcgatttaat gtatcgttta caagaagcgg atcccgatga acttgccgct
     1141 cgtaataaaa atgttttcac taaaatgttc caccgagtaa aacaatccat caacgaaatt
     1201 acttctaaat atcaaaaaat tggtacccaa attgaccgca tcgcgttgaa actggaacat
     1261 tccaaaaagc gtttaatgga agataactct ttcctagaac agctttatga taaaaataaa
     1321 gattacttcc aagcacttaa catctacatt gctgctggag aattaaaatt agaagaaatt
     1381 aatacaaaaa tgctcccaga acttcgcaaa aaagcagaac aaactggcga ccaaatggat
     1441 taccaagaag tgaatgactt aacgcaattt gctgaccgtc tggataaacg agtatatgat
     1501 ttacgtctaa gccgtcaaat cactatccaa caagcaccgc aaatccgctt aatccaaaat
     1561 acaaaccagg cacttgctga aaaaatccag tcttccatta tgactgcgat tccactttgg
     1621 aaaaaccaag tagctatcgc gcttaccttg ctccgtcaac aacaagccgt agcagctcag
     1681 cgccaagttt ctgaaacaac gaacgaactt ctaaaacgaa acgccgatat gctaaaaaca
     1741 aacgctatcg aaacagcgcg tgaaaacgaa agaggtatcg tagacatcga aacacttaaa
     1801 gaaacgcagt ccagcttaat tgaaaccttg caagaaacgc ttaaaatcca acaagaaggc
     1861 cgtgctaaac gtgccgtagc agagaaagaa cttgtaacaa tggaacaaga acttaaagaa
     1921 cgtttactgg aaatgaaata atcaaaaagg ctagcaccta aatcgtgcta gcctttttta
     1981 tagtccttct aaacgtaaat tttcaaaata aacgggtttt aaattggtta cagtaagccc
     2041 aatcaaacga atactatcct gaccagtata gctttctctt aaaagaaggg ccgccgcttg
     2101 ataaatttga cttgcatcat tggtatattc gtttaaagta agccgcttag taatggttgt
     2161 aaagtcactg tagcgtagtt ttagtactac cgtcttacca tgtttttgta gtttaatgag
     2221 ccgttcttct acttttttgg caaattgcat gaggctttgt tcgagaactc ggctatctaa
     2281 cacattaaat tcaaaagtag tttctttacc aacggacttg cgatcacgat gcggattcac
     2341 aatgttgtta gaacgacctc gaacatgtcg atataaatga tagccatgtt tgtgtaattc
     2401 gcgaataagg tcccactcgc tccacttctt caaatctgct cccgtttcaa ttcctaaacg
     2461 atgcaatttt tctgcggtta ctttccctac cccataaaat ttagtgactg gtatttgttc
     2521 taaaaaggct tctgcttctt ctggtgtaac taccgtaata ccagcaggtt tcttaaaatc
     2581 agaagcgatt tttgcgataa atttattaaa tgatacgccg gcagaagcag ttagaccaag
     2641 ctcttggtaa atcgtctgct gaatctcgcg tgcaaccatt gtggcggatt tcattccttt
     2701 tttgttttca gttacatcca gataagcttc atctaaagag agcggttcga taatatccgt
     2761 atatctggaa aagatctcgc ggatttgatt agaaacctct acataatgag ccatattgcc
     2821 gtgaataaaa ataccgttcg gacaaagttt agcagcttgc ctggtgggca tagctgaatg
     2881 cacaccgaat ttgcgcgctt cataagaaca agtcgcaaca actccgcgtt tattagggtc
     2941 tccaccaata ataagtggct tccctcgaaa ctcaggatgg tcgcgttgtt ccacagatgc
     3001 ataaaaagcg tccatatcaa tatgaataat ttttctactc gtatccataa ctgcatctcc
     3061 tctgaaacga acaaacgttc ttattcaatt ataaaggtta tcctcattaa ttacaagaaa
     3121 aaaataccct attttcataa gatattttct tctgttttat ttctttaaaa atgcaccttt
     3181 accgaagaat tcgataactt gtggcattac ttgataaagt cgtgttgcaa tgttcattac
     3241 aaaaggtaaa ttgatttcgc gacgcttagt tcccataatt tgtactgttt tacgcgcaac
     3301 cttttctggc tttaacacta atttgccaac tgtttctaaa tagtttcctg atttatccgc
     3361 tacatcgaaa aagtttgtgg caatcgggcc aggattaatc gttgtaacat ggattttatc
     3421 tggcattagt tctaaacgaa gtgcattaga aaagcctaaa accgcatatt tcgtggctga
     3481 ataaacggtt gatttaggtg tagcgatttt agcggcttgg gaagcaatat taataatatg
     3541 tccagctttg cgcgcttgca tttgcggtaa aatcagttgt gtgagttgaa ttaagccaag
     3601 tacattcgta tcaaacattt tttcaattgt ctcaaatgga atatctaccg cattttcaaa
     3661 taaaccaaaa cctgcacagt tgactaacac atcaatttga taggatgcat ttatctctgc
     3721 gctgacttgt ttcacttgct caaaatcagt catatctaaa gtaaaataag tcgcttctac
     3781 tgaaaaatta tcatgtatat ctttttgtaa ttctattaa
//
LOCUS       DASEAA010000217         3815 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.218, whole genome shotgun sequence.
ACCESSION   DASEAA010000217 DASEAA010000000
VERSION     DASEAA010000217.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3815)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3815)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3815
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.218"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            100..492
                     /locus_tag="U0342_002720"
     CDS             100..492
                     /locus_tag="U0342_002720"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424048.1"
                     /translation="MREIEYRAFVKETKKILPVTDLCFNETESVGVSGCGNPYCTMCV
                     DWYNFDDVLLMQYTEREDINNNKIFEKDIATCQFFDKKITGVIEFIEFMWAVIDHKNQ
                     RLYQLNEVSNIEVVGNVEENPELLEVSE"
     gene            489..674
                     /locus_tag="U0342_002721"
     CDS             489..674
                     /locus_tag="U0342_002721"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424049.1"
                     /translation="MNDKKTDYKVYKITYKQRFMGEVIVDSYERTVKDDNELRSAINA
                     LYDDPHVFSVSSEEVAE"
     gene            671..961
                     /locus_tag="U0342_002722"
     CDS             671..961
                     /locus_tag="U0342_002722"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424050.1"
                     /translation="MILYGVVTYDEATEWTTDLLTAKKWVENAKQVFYDGELDEDYYV
                     ALIKLDVEAFLYDKYDKETDLSDQLHDEAETLKEYRLRLDDDGTYMVKEVAE"
     gene            961..1146
                     /locus_tag="U0342_002723"
     CDS             961..1146
                     /locus_tag="U0342_002723"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424051.1"
                     /translation="MCKFCNDDLKKRESVVDEMDPQDKIWLTSDKELVTNIVRNKEEY
                     SAYFNIKYCPVCGRSLE"
     gene            1147..1377
                     /locus_tag="U0342_002724"
     CDS             1147..1377
                     /locus_tag="U0342_002724"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727770.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424052.1"
                     /translation="MENARERKRMYEKETGEIQNRIDAFDRALEQAPNLDTKMEYMQT
                     INSLRELLIIKFEGLAIASDEIINELEEGINE"
     gene            1370..1579
                     /locus_tag="U0342_002725"
     CDS             1370..1579
                     /locus_tag="U0342_002725"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424053.1"
                     /translation="MSELTELKQTLKDLLEDLEIMKNADDQLIKLSGSTTSKSLNYLW
                     EDIRYTITQIKEINYKIQIMEEELK"
     gene            1576..2097
                     /locus_tag="U0342_002726"
     CDS             1576..2097
                     /locus_tag="U0342_002726"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424054.1"
                     /translation="MTKYYRIEKGTKAYEYLDKIYNQDTSAFLDEVTKLIGFDANGHI
                     GINREELIIKKSTLEELKPEWMHKFKRYQGEWMTPKVVLKELISSYAELRKKYNMDYE
                     FMYFCINNRLAGGVKVIYDFNSSGFTYLESNRDVENNDFDQVSEIKYLERKAELLAFE
                     IEQKKNMEQEVSK"
     gene            2094..2273
                     /locus_tag="U0342_002727"
     CDS             2094..2273
                     /locus_tag="U0342_002727"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424055.1"
                     /translation="MIPPFKIAEDEFIAISTAEELLEYIQHANELVSVVRESRSKAYK
                     ELASRGLQPLKEVQE"
     gene            2270..2530
                     /locus_tag="U0342_002728"
     CDS             2270..2530
                     /locus_tag="U0342_002728"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424056.1"
                     /translation="MTNYHILLYAESGGVKILFNDYNKENITFDELKTSILKRLGNVD
                     SVNRINRDKVKVKQIITNSTSIKEMTEKINFETELRLDVREV"
     gene            2534..2707
                     /locus_tag="U0342_002729"
     CDS             2534..2707
                     /locus_tag="U0342_002729"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930904.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424057.1"
                     /translation="MTKQIIINEANSLLHRKSKELSKSIIKTPKDLERFAVGLDKLSQ
                     DMWDYKNELEAIK"
     gene            2704..3087
                     /locus_tag="U0342_002730"
     CDS             2704..3087
                     /locus_tag="U0342_002730"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743931.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424058.1"
                     /translation="MSIFAGDKIEVQDRSGVAELCVDGEQFHVLMNNGGLLTVEDEDG
                     FSSFNIPATQVKKVKVNSDVKLINELYGQSDAVSFSIYNADIDKAKLFVSNVNKPQFD
                     ERNNVKWYSASKGKITATAFLKGDD"
     gene            3089..3568
                     /locus_tag="U0342_002731"
     CDS             3089..3568
                     /locus_tag="U0342_002731"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731665.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="siphovirus Gp157 family protein"
                     /protein_id="HEM2424059.1"
                     /translation="MSTLYSIQGKYQQLLNLAEQLDPELLKDTLESIDDELETKAENV
                     AFVIKELEGQSLILEKETKRLAERKNTINNNVKRLKQSLFDAMITANKQKIKTNLFTL
                     DIRKNPPSLIVEDESKLLNYLIEQPKKLDKTKLGDDLKKGIEVPGAKIIQTERLQIR"
     gene            3581..>3815
                     /locus_tag="U0342_002732"
     CDS             3581..>3815
                     /locus_tag="U0342_002732"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010991282.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2424060.1"
                     /translation="MEFIQSEKMKRSEYFNIMIYAKPGAGKTTTIKYLEGKTLMLDCD
                     GTSKVLSGLPNITIATLDPRNPVQDMADFYGYAK"
BASE COUNT         1515 a          517 c          802 g          981 t
ORIGIN      
        1 cacacaagat atatcttgtt ttgtggcatg tgcgagtgtg gacttgtatg gactatctga
       61 atttaaattc aaaaataagc cgaaggaagg gacgatagca tgagagagat tgaatataga
      121 gcgtttgtaa aagaaactaa gaaaatactt ccagtcacag atttgtgttt taacgaaaca
      181 gagtctgtag gcgtaagtgg ttgcggcaac ccatattgta caatgtgcgt cgactggtac
      241 aactttgacg atgtcctgct gatgcaatac acagaaagag aagacatcaa caacaataaa
      301 atatttgaaa aggacattgc aacttgtcag tttttcgaca aaaaaatcac tggtgttatc
      361 gagtttatcg aatttatgtg ggcagtaatt gatcacaaga atcaacgact atatcagttg
      421 aacgaagtta gcaatattga agttgttgga aatgtggaag aaaacccgga attgttggag
      481 gtgtcggaat gaacgataaa aaaacagatt ataaagtata taaaataaca tacaagcaac
      541 gtttcatggg ggaagttatt gttgattcat atgaaagaac ggtaaaagat gataacgaat
      601 tacggtctgc aattaacgct ttatatgacg acccacatgt gttttcagtt agtagtgaag
      661 aggtggcgga atgattttat atggggtagt aacatatgac gaagcaacag agtggacaac
      721 ggatttgcta acagccaaaa aatgggtaga aaatgctaag caagttttct atgacggaga
      781 acttgatgaa gattactatg ttgcgttaat aaagttagac gtagaagcat tcttatacga
      841 taaatatgac aaagaaacag atttgagtga tcagttacac gatgaagctg aaacattgaa
      901 agagtatcgt ttgagattag atgatgacgg aacttacatg gtgaaagagg tggcggaata
      961 atgtgtaaat tttgcaacga tgatttgaaa aaacgagaaa gcgttgttga tgaaatggat
     1021 ccacaagata aaatttggct gacaagtgat aaagaactcg ttactaacat agttagaaat
     1081 aaagaggagt actcagctta ttttaatatc aagtactgcc cagtttgcgg aaggagtttg
     1141 gaataaatgg agaatgcacg tgaacgcaaa agaatgtacg agaaagaaac tggggagatt
     1201 caaaatcgga tagacgcatt tgatagggcg ttagaacaag cacccaacct agatactaaa
     1261 atggaatata tgcaaactat aaacagtcta agggaactct taataataaa attcgaagga
     1321 ctagcaattg cgtcagatga aatcataaat gaattagagg agggaataaa tgagtgaatt
     1381 aactgaacta aaacagacac tcaaggattt actcgaagac ttggaaataa tgaaaaacgc
     1441 agatgaccaa ttaataaaac ttagcggaag tactacgtcg aaaagtctaa actatctatg
     1501 ggaagacatc agatatacaa tcacacaaat caaagaaata aattataaaa tacaaattat
     1561 ggaggaggaa ctaaaatgac aaaatattat cggattgaaa aaggtacaaa agcatatgag
     1621 tatttagaca aaatttacaa tcaagacaca agcgcttttt tagacgaggt cacaaaactt
     1681 attggatttg atgcgaacgg tcacattggt atcaatcgtg aagaattaat aataaaaaaa
     1741 tcaactttgg aagaattaaa accagaatgg atgcacaaat tcaaaaggta tcagggtgaa
     1801 tggatgacac cgaaagttgt gctaaaggag ttaatcagtt catatgcaga acttcgaaaa
     1861 aaatacaata tggattatga gttcatgtat ttttgcataa ataaccgctt ggcgggcggt
     1921 gtcaaagtta tctacgattt taattccagt gggtttacat atttggaatc taatagagat
     1981 gtggaaaaca atgattttga ccaagtgtca gaaattaagt atctcgaaag aaaagcagaa
     2041 ctcttagctt ttgaaattga acaaaagaaa aacatggagc aggaggtaag caaatgattc
     2101 caccattcaa aatcgcagag gacgaattta tagctatttc tacagcagaa gaacttttag
     2161 agtatatcca acatgcaaac gagcttgtaa gtgtagtaag agaatcaaga agcaaagcgt
     2221 acaaagaatt agcaagtcga ggcttacagc cattgaagga ggtgcaagag tgacaaacta
     2281 tcatatttta ctttacgcag aatcaggcgg agtcaaaata ttattcaatg attacaacaa
     2341 agaaaacatt acttttgatg aacttaaaac atcgatccta aagcgattag gcaatgtgga
     2401 ctctgtgaat cgcatcaata gagataaagt taaagtgaaa caaatcatta caaattcaac
     2461 ttcaataaag gaaatgacag aaaaaatcaa tttcgaaaca gagttacgtc ttgatgtaag
     2521 ggaggtatga aaaatgacaa aacaaatcat catcaacgaa gctaacagtt tacttcacag
     2581 aaaaagcaaa gaactaagta aatcaatcat caaaacacct aaagatctcg aacgtttcgc
     2641 ggttggacta gataaattat cacaagatat gtgggattat aaaaatgaat tggaggcgat
     2701 taaatgagta tttttgctgg cgataagata gaggtacagg atcgaagtgg tgtagctgaa
     2761 ttgtgtgttg atggtgagca gtttcatgtt ctgatgaata atggtggtct gctaactgtt
     2821 gaagatgaag acggattttc atcctttaac ataccagcaa cccaagtcaa gaaagtgaaa
     2881 gtgaatagtg atgttaaatt aataaatgag ctatatggcc aatcagatgc agtaagtttt
     2941 agtatatata atgcagatat agataaagct aagttgtttg tatctaatgt aaataagcca
     3001 caatttgacg aaagaaacaa tgtgaagtgg tattctgcat caaaaggcaa aataacagca
     3061 acagcatttt tgaaaggaga tgattaaaat gtcaacatta tactcaattc aagggaaata
     3121 tcaacagttg ttaaatctag cagaacagct tgatccagaa ttactaaaag atacccttga
     3181 aagtatcgat gatgaactag aaacgaaagc tgaaaacgta gcatttgtta ttaaagagct
     3241 agaaggtcaa tcgctaatct tagaaaaaga aacaaagcgt ttagctgaac ggaaaaatac
     3301 tattaataat aatgtgaagc gactgaaaca atcgttattt gatgcaatga taactgccaa
     3361 taagcaaaaa attaaaacaa acttattcac attagatatc cggaagaacc cgccaagcct
     3421 cattgtagaa gacgaaagca aactgctgaa ttacctgatt gaacaaccaa aaaaattaga
     3481 taaaacaaaa ttaggcgatg atttgaagaa aggtattgag gtaccaggtg cgaaaattat
     3541 tcaaacagaa agattgcaaa taagataagg agggatttca ttggaattta ttcaatcaga
     3601 aaaaatgaaa aggtcggagt attttaatat tatgatttat gcaaaaccgg gagcagggaa
     3661 aacaacgacg attaagtatt tagaaggaaa aacattaatg ttggattgtg atggtacgtc
     3721 gaaagtatta agtggattac ctaatatcac gattgcgaca ttagatcctc gaaatcccgt
     3781 acaagatatg gctgattttt atggatatgc gaagg
//
LOCUS       DASEAA010000218         3814 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.219, whole genome shotgun sequence.
ACCESSION   DASEAA010000218 DASEAA010000000
VERSION     DASEAA010000218.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3814)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3814)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3814
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.219"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(178..1185)
                     /gene="tagH"
                     /locus_tag="U0342_002733"
     CDS             complement(178..1185)
                     /gene="tagH"
                     /locus_tag="U0342_002733"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726883.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="teichoic acids export ABC transporter
                     ATP-binding subunit TagH"
                     /protein_id="HEM2424061.1"
                     /translation="MGKNIKVSFKHVSKEYDLYQNKSDKIKGLFMPKSQKMQSFWALR
                     DVSFDIHDGETVGLIGINGSGKSTISSIMSGVIPPTQGEVIINGETSLIAIAVGLKGP
                     LTGYENIRLKLLMHGMKSSQINKLMPSIIEFADIGDFINQPIKNYSSGMRSRLGFAIS
                     VHTNPDILVIDEALSVGDQTFYEKCVDKINEFKARGKTIVFVSHSLGQVKSLCDRIIW
                     MHHGEIREMGTAQEVAQKYDEFVKWFNKQPNDYKKKYQKEHKENQKAPQKKIYPNPNA
                     NKYRLTLFDKIFLTVLIALTILFGTLVATGKSFKGLISEESTTQIEKVVHVDNYDLKL
                     N"
     gene            complement(1198..2001)
                     /locus_tag="U0342_002734"
     CDS             complement(1198..2001)
                     /locus_tag="U0342_002734"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464599.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2424062.1"
                     /translation="MKQVMEVIKEQIKNLPMIFRIARYEDKATYQSHYLGLAWQILNP
                     LIQIAIYYFVFGFGMNAKSGSDASYIEWMLAGIIPWFFISAVILQGANSIYNKIGMVS
                     KMNFPMSILPNITIVSNLTSYFTMMVILLGLLAINGTPITIYWGQYLYYFVAMIAFLF
                     SVTLFNATISVLVRDYYIMLQSVMRVLFYVTGIVWNLETMLPQWLVDLLKLNPIYYVV
                     NGFRETFLMNKGFWESPSYTMYFWLITLTLLFVGATLHMKFRERFVDYL"
     gene            complement(2283..3176)
                     /locus_tag="U0342_002735"
     CDS             complement(2283..3176)
                     /locus_tag="U0342_002735"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738648.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter substrate-binding protein"
                     /protein_id="HEM2424063.1"
                     /translation="MKWFKGIAVVLLLAILTACGNTEVKETTKQTEEIKVKDATGETI
                     TLKKAPTKIVSLIPSNTEILFALGLGDEVKGVSAYDDYPKEAQKIEKVTSTSVDTEKI
                     IALKPDLVLGHESMLATEKDAYKILTDAGINVFVVPDATNLKEVEKSIATIGDLTGTE
                     KEATKVTDSMEKQKVAIEKKAKELKTSPKVWIEISPDLYTAGKGTFMNEMLELAGGTN
                     IVTESGFIPYNEEKVVELQPDIILSVYPDAKATIQKRAAWKDIPAVKNDKIYEMDANK
                     LSRPGPRLLEGAADIQAVLEN"
     gene            complement(3330..>3814)
                     /locus_tag="U0342_002736"
     CDS             complement(3330..>3814)
                     /locus_tag="U0342_002736"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="biotin/lipoyl-binding protein"
                     /protein_id="HEM2424064.1"
                     /translation="QEMINKYGDVTVLDTPTFYKGMRLGETIEVELEKGKILLIKLNS
                     IGEPIADGTRVIYFELNGQPREINIQDMNVQSTVIARRKIDTTNPEHVGATMTGSVIQ
                     VVVKKGDSVKKGDPLLITEAMKMETTIQAPFDGEVSSIYVSDGDTIESGDLLIEVNRI
                     "
BASE COUNT         1153 a          729 c          548 g         1384 t
ORIGIN      
        1 aactttatgc ctccgtaagt tacaaattta ttacaaaaaa aataaatggt attataacaa
       61 caaatttgtt aaacatttag acaaaatttt tatttcattt tatgataaaa tgctttactt
      121 cttcaatttt aaataaaaac ttccaaaaga tagataactt ttggaagttt tttacagtta
      181 attcaatttt aaatcgtaat tatcaacatg tactactttt tcaatttgtg ttgtggattc
      241 ttcactaatt aagcctttaa aagatttccc tgtcgccact agtgttccaa atagtatcgt
      301 taatgcaatt agcacagtta aaaatatttt atcaaaaaga gttagcctgt atttattggc
      361 attaggatta ggatagattt ttttctgagg agctttttga ttttccttat gctctttttg
      421 atattttttc ttataatcat ttggttgttt gttaaaccat tttacaaact catcatattt
      481 ttgagcaact tcttgtgctg tacccatctc tcttatttca ccgtgatgca tccaaataat
      541 tctgtcacac aaacttttta cttgtccaag tgagtgactg acaaaaacaa tagttttgcc
      601 acgcgcttta aattcattaa tcttatcaac gcatttctca taaaaagtct ggtcacccac
      661 tgataaggct tcatcaataa ctaaaatatc aggattggta tgcaccgaaa ttgcaaaacc
      721 taaacgagaa cgcatcccgc ttgaatagtt tttaattggt tgattaataa aatcacctat
      781 atcagcgaat tcgataatac ttggcatcaa cttgttaatt tgagaacttt tcattccatg
      841 catgagtaat ttcaagcgaa tattttcata acccgtcagc ggacctttta gtcccactgc
      901 aatggcaatt aaagaagttt ctccgttgat aatgacttct ccttgtgtcg gaggaataac
      961 acctgacata atactcgata tagttgactt accagaacca ttgatcccaa taagtcctac
     1021 tgtttcacca tcatgaatat caaaagatac gtctcgcaac gcccaaaagg attgcatttt
     1081 ttgacttttc ggcatgaaca agcctttgat cttatcagat ttattttgat agaggtcata
     1141 ttctttcgac acatgtttaa atgatacttt tatattttta cccatctgtc taacctccta
     1201 taaataatcc acgaagcgtt cgcggaattt catgtgtagt gtcgcaccaa caaatagtaa
     1261 tgttagcgtg attaaccaga aatacatcgt gtatgatgga gattcccaga agcctttatt
     1321 cattaagaat gtctctctaa agccgtttac cacatagtaa atcggattta gtttgagtaa
     1381 atctactagc cattgcggca acattgtttc taaattccaa acaatccctg ttacgtaaaa
     1441 aagtacacgc atgacagatt gcagcataat ataatagtct cttactaaaa cgctaattgt
     1501 tgcattaaat aaagtaacac tgaagagaaa agcaatcatg gctacaaaat aatacaagta
     1561 ctgaccccaa tagattgtaa taggagttcc attaattgcg agcaagccta gcaaaattac
     1621 catcatagta aaataacttg ttaaattaga gacaatcgtg atattaggta aaatactcat
     1681 tgggaaattc atttttgaaa ccatgcctat tttattataa atactattcg caccttgcaa
     1741 aataactgca ctaataaaga accaaggaat aatccccgct agcatccatt caatataact
     1801 tgcatccgat ccagattttg cattcatccc aaatccaaac acaaaataat aaatagcaat
     1861 ttgtattaat ggatttaaaa tctgccatgc tagtcctaaa taatggcttt ggtatgtagc
     1921 cttatcttca tagcgcgcaa tgcgaaatat cattggtaaa ttttttattt gttctttaat
     1981 aacttccata acctgtttca caaaaacact tcttcccgaa aaataatatg gttttaataa
     2041 ccagattcag ctcactattc ttttataggc aactcctcca cttaaaacca cagacacctt
     2101 gtttgtatta tttgtcgtct cggttgccat attcttgctg tttatgcatg atcttctaag
     2161 tgtatatagc tctgcttatt tggcaaatta ttttactaat acggtttagt aaaaaatcca
     2221 ccctatgtta aattacctta aaagtcattt tttgtaaagc ttcatctgca attatcaaag
     2281 aattagtttt caagaacagc ctgaatatct gctgcccctt caagcaatct tggtcctgga
     2341 cgacttaatt tattggcatc catttcatag attttatcgt ttttaaccgc tggaatatct
     2401 ttccatgctg cacgtttttg gatagttgct ttggcatctg gatagacaga taaaatgata
     2461 tccggttgca gttctactac tttttcttcg ttgtaaggaa tgaaccctga ttctgttaca
     2521 atattagttc caccagcaag ttctaacatt tcattcataa atgttccttt tcctgctgtg
     2581 tataagtctg gactaatttc aatccatact tttggggatg tttttaattc tttcgctttc
     2641 ttttcaatag ctactttttg tttctccatt gaatcggtca cttttgtagc ttctttttct
     2701 gttcctgtta gatcaccaat ggtagcaatc gatttttcta cttcctttaa gtttgttgcg
     2761 tctggaacta caaacacgtt aattcccgca tctgtaagta ttttataagc gtctttttct
     2821 gttgcaagca tcgattcgtg tccaagaact aaatcaggct taagagcaat aattttttct
     2881 gtatcaactg aagtagaagt cactttctct attttctgag cttcttttgg ataatcatca
     2941 tatgccgata ctccttttac ttcatcacca agtcctagtg caaataaaat ttctgtatta
     3001 cttggaatta atgaaacaat tttagttgga gcttttttca gtgtaattgt ttcaccagtt
     3061 gcatctttca ctttgatttc ttctgtttgc tttgttgtct cttttacttc cgtattcccg
     3121 catgcagtta aaatagcaag caataaaact acggcaattc ctttaaacca tttcatatgt
     3181 atgttctcct tttttcagaa aaaacaggcg ggaaatctaa cactaataaa tctggaaaaa
     3241 cgtctttatt ctcacgttta acttatcgat ttttaaagtt cttcacttta aattagcgtc
     3301 atattcccac ccgttagtca tttatgtttt taaattctgt ttacttcaat taaaagatca
     3361 ccagattcga tagtatcgcc gtcagaaaca taaatgctgc taacttctcc atcgaaaggc
     3421 gcttgaatcg ttgtttccat tttcattgct tctgtgatta gtagtggatc accttttttc
     3481 acagagtcgc cttttttaac aactacttga atgactgaac ctgtcattgt agctccaaca
     3541 tgttcagggt tagttgtatc aatcttacgg cgtgcaataa cagtggattg aacgttcata
     3601 tcttggatgt taatctcacg tggttgtcca tttaattcaa aatagataac acgtgtgcca
     3661 tccgcaattg gttcaccaat agaatttagc ttgattaaaa ggatttttcc tttttcaagt
     3721 tctacttcga ttgtttcccc taaacgcatt cctttataga atgttggtgt atcaaggact
     3781 gttacatcac catatttatt aatcatttct tgat
//
LOCUS       DASEAA010000219         3759 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.220, whole genome shotgun sequence.
ACCESSION   DASEAA010000219 DASEAA010000000
VERSION     DASEAA010000219.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3759)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3759)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3759
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.220"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(57..290)
                     /locus_tag="U0342_002737"
     CDS             complement(57..290)
                     /locus_tag="U0342_002737"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738560.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424065.1"
                     /translation="MKNKVGIIAGAVGAVAGVLACAVVYVVKKQQPPTPFDEVNDIRT
                     RYADKEISETELEENNMISEGGVSSLQYEEKVK"
     gene            complement(384..842)
                     /locus_tag="U0342_002738"
     CDS             complement(384..842)
                     /locus_tag="U0342_002738"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2424066.1"
                     /translation="MIKRTGEIVLAIIGLVLSILAQAFIAIIGLLMISGSKGKEGLTT
                     FYNNYYKTMNEWEIPKKEIPDPDRVLDFVQTLSWTALTGGLITLALGIFGIYYIFKNK
                     KPVFAGYLFLAAGVVSLLSTALISFIPALLFIVVAILCFVRKPKSTFSGL"
     gene            1000..1821
                     /locus_tag="U0342_002739"
     CDS             1000..1821
                     /locus_tag="U0342_002739"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464476.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2424067.1"
                     /translation="MLKRVFFSIILPLGCLVGAIFILLTINTTYPKAANESIPTIFIH
                     GYRGTDRSLHGMIRRFDQKYDWGTESLTVNVSPDGKISTTGTYNKKEKNPLINIVFED
                     NRATLPQQSMWTKKVMSYLQQNYAIKKFNAVGHSMGGGAWVSYLASYEKNKSYPQVNK
                     IVFLAVPFYPEEYVNGDQQVDIKNANNVHAKFAEKMAKVLPNNTEIMIIGGNLEDGSN
                     SDGEVKLDSVLYGEKLFAHQKVTTHVIKGPQATHSSMHESTVVDKYVGQFLWGEK"
     gene            1842..2741
                     /locus_tag="U0342_002740"
     CDS             1842..2741
                     /locus_tag="U0342_002740"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464475.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2424068.1"
                     /translation="MKKVISLIIALAIIITGFWIIFLQFEPTKKEAKEPAVTANKTTK
                     KEQKPVSEIAIPTLFVHGYSGTINSFGGMINRLAEDGDVTKSLVMNVAADGTVSSDGN
                     YDKFSHNPTIQVIFEDNKSSAANQTQWIQNVMKELKNNYHIEKVYAVGHSMGGVSLTS
                     YIEKVGSDKTYPVLEKLVLIGAPLNGLVIGDDGVTAYDLTDSGPKKSSDRYSEFMKNK
                     QKIPTNLHVLNIAGDTLNGTKSDGSVSVASALSGKFIFEGQAASYEEKTFTGKNAAHS
                     KLHENTDVDAEVADFLWGIEKVD"
     gene            complement(2751..3746)
                     /locus_tag="U0342_002741"
     CDS             complement(2751..3746)
                     /locus_tag="U0342_002741"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726343.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2424069.1"
                     /translation="MFVLLGIVLYLLRSMIDLILLTFIFAFLVTRLENVILKRVRVPR
                     KLIVIVLYSLVAVFLYVAIVHFLPILINQISQLVDSLVKLYNNPSDNTIVKWIVGFLK
                     ESNIQKYLQAGVDFIIASLSGIGSVGLSFFLALILSLFFSLEKERVTSFTGQFMTSKV
                     GFIFKEAAFFGKKFVSTFGVVLEAQLMIALVNTFITTIALYLMDFPQLLSLSIMVFVL
                     GLIPVAGVIISCIPLVLIAYSVGGFQDVVYILITVVIVHAIETYILNPKLMSSKTNLP
                     VFYTFIILIFSETFFGVWGLIVGIPVFVFLLDILEVRNAEDLKKRTIFGRKKKVD"
BASE COUNT         1341 a          658 c          640 g         1120 t
ORIGIN      
        1 tctacataaa aaaacagctt gttctcgcgt aacacaagat acaaactgca ttctcattat
       61 ttgacttttt cttcatattg aagagatgaa acgccacctt ctgaaatcat gttattttct
      121 tccagttctg tttcagaaat ttctttgtca gcgtaacggg tccgaatatc atttacctca
      181 tcaaaagggg taggcggctg ttgcttttta accacgtata ctactgcaca agctaaaact
      241 ccagcgacag ctcccacggc tccggcaata attcctactt tatttttcac actatcaacc
      301 tcctcttgaa atccactatt ttattcccta aaaaagtaga agtaaaacaa aaacgagctt
      361 gaaaagttca aactcgtttc gaattataat ccagaaaaag tgctcttcgg tttgcggaca
      421 aaacaaagta tcgcaacaac aatgaataat aacgcaggaa tgaaactaat tagtgctgta
      481 gaaagcaacg atacaacgcc tgctgctaaa aataaatatc ctgcaaaaac tggtttttta
      541 tttttgaata tgtagtaaat cccaaagata ccaagtgcga gcgtaattaa gcctcctgtt
      601 aatgcagtcc aagataatgt ttgcacaaaa tctagtacac gatcgggatc aggaatctct
      661 tttttcggga tctcccattc attcattgtt ttgtagtagt tgttgtagaa agttgttaaa
      721 ccttcttttc cttttgaacc acttatcatc aatagaccaa taatagcaat aaatgcttgt
      781 gcgagtatac ttaaaacaag accaataata gcgagtacta tctcaccagt tcgtttaatc
      841 atatgaatat gcctccgttt cttcgcttat ttttccagta tactatatgt gttcatgaga
      901 tgaaaccatt aaattagtag aaaaagtaga ccaatcgtgc gttttctata aaaaaaatgt
      961 ataatttgtt cataacgaat tttaaagggg cgtaaaataa tgctaaagcg cgtgttcttc
     1021 tccattatct taccattagg ttgtttagtt ggagcaattt ttattttact gacgattaac
     1081 acgacttatc caaaagcagc caatgaatcc atccctacca tttttataca tggttatcgt
     1141 gggacagacc gctcgcttca cggaatgata cgtcgctttg accaaaagta tgattggggt
     1201 acagagtcat tgaccgtaaa tgtaagccca gatggaaaaa tttctactac tggaacttat
     1261 aacaaaaaag aaaaaaatcc acttatcaac attgtttttg aagataatcg agcaacgctt
     1321 cctcaacaat caatgtggac aaaaaaggta atgtcttatt tacaacaaaa ttatgccata
     1381 aaaaaattta atgcagtagg tcattcaatg ggtggcggtg cttgggtttc ttatttagct
     1441 agttacgaga aaaacaagtc ctatccacaa gtaaataaaa ttgtgtttct tgcagttcca
     1501 ttttatccgg aagaatatgt gaatggcgat cagcaggttg atattaaaaa tgccaataat
     1561 gtgcatgcta aatttgctga gaaaatggcc aaagttttac ccaacaatac tgaaattatg
     1621 attattggtg gtaatttgga agatggttca aatagtgatg gtgaagtgaa attagatagt
     1681 gttttatatg gtgaaaaatt atttgcacat caaaaggtaa cgacacatgt cattaaagga
     1741 ccacaagcta ctcatagtag tatgcatgaa tctactgtag tggataagta tgttggtcaa
     1801 tttttatggg gcgagaaata aacgattaaa ggatgtttga aatgaaaaaa gttattagtt
     1861 taattatcgc attagccatt atcattactg gcttttggat aatttttctt caatttgagc
     1921 cgactaaaaa agaagctaaa gagcctgctg tgacagcaaa taaaacaaca aaaaaagaac
     1981 aaaaacctgt ttcagaaata gcaatcccta ctctgtttgt tcatgggtat tctggaacaa
     2041 ttaattcatt cggaggtatg attaatcgtc ttgctgaaga cggggatgta acaaaatcac
     2101 ttgttatgaa tgttgcagct gatgggactg taagctctga tggaaactat gataagttta
     2161 gtcataaccc tactattcaa gttatttttg aagataataa aagctcagcg gcaaatcaaa
     2221 cacaatggat tcaaaatgtc atgaaagaat taaaaaataa ttatcatatc gaaaaagtat
     2281 acgcagttgg tcattccatg ggtggcgtta gtttaacaag ttacattgaa aaagtaggta
     2341 gtgataaaac ttatcctgtt cttgaaaaac ttgttttaat cggtgctcca cttaatggac
     2401 tagtaattgg tgatgatggt gttacagctt acgaccttac agattcaggg ccaaaaaaat
     2461 cttcagaccg ttatagtgaa ttcatgaaaa acaaacaaaa aatccctact aatttgcacg
     2521 tattaaatat tgcaggtgat actttaaacg gaacaaaaag cgatggtagc gtttctgttg
     2581 cgagcgcctt atctggcaaa ttcatttttg aaggccaggc agcaagttac gaagaaaaaa
     2641 cattcacagg taagaatgca gctcatagta aactccacga aaataccgat gttgatgctg
     2701 aagtagctga ctttttatgg ggaatagaaa aagtagatta aggctatcgc ctaatctact
     2761 tttttcttgc gtccaaatat tgttcgtttt tttaagtctt ctgcatttct cacttctaaa
     2821 atatctaata agaatacaaa gactggaatt cctacgatta gcccccacac tccaaagaat
     2881 gtttccgaga aaatcaaaat aataaatgtg taaaataccg gtaagttcgt tttagatgac
     2941 attaattttg gatttaaaat gtaggtctct attgcatgaa caatgacaac ggtaattaaa
     3001 atgtacacca catcttgaaa tcctccaaca gaataagcta taagcaccag tggaatacag
     3061 gaaataatca cccccgcaac ggggattaat cctaagacga aaaccataat ggataaacta
     3121 agcaactgtg gaaagtccat taaataaagc gcgattgtcg taataaatgt gtttactaaa
     3181 gcgatcatta attgcgcctc taaaacgact ccaaaagtcg aaacaaattt ctttccaaaa
     3241 aatgcagcct ctttaaaaat aaagcctacc ttacttgtca tgaactgccc agtaaaagaa
     3301 gttactcgtt ctttttccaa agagaaaaat aaactaagaa ttaatgctaa gaagaaagat
     3361 aatccgacag atccaatacc ggatagtgaa gcaataataa aatcgacccc agcttgcaaa
     3421 tatttctgta tgttagattc ttttaaaaac ccaacaatcc acttcacaat cgtattgtca
     3481 cttggattat tgtaaagttt cacaagagaa tctactaatt gagaaatttg attaattaaa
     3541 attggtaaga aatgcactat agcgacatat aagaatacag ctactaatga ataaagtaca
     3601 atgacaatta gctttcttgg tacgcgcacc cttttcaaaa taacattctc tagtcgtgtt
     3661 actaaaaatg caaaaatgaa tgttagtaaa atcaaatcaa tcatacttct gagtaaatat
     3721 aaaacaatgc ctagaagaac aaacactagc acccgtctt
//
LOCUS       DASEAA010000220         3750 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.221, whole genome shotgun sequence.
ACCESSION   DASEAA010000220 DASEAA010000000
VERSION     DASEAA010000220.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3750)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3750)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3750
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.221"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..455
                     /locus_tag="U0342_002742"
     CDS             <1..455
                     /locus_tag="U0342_002742"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003769972.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424070.1"
                     /translation="EDSATFIFADERKGASTLTYAHFIINNMHAIDEKTLGSCIGRED
                     EDEKTIFENDIVQVVLEHWPMGYYQEVEYIGVVKYDTDICAYYLDLIKPPAVSGETIP
                     DEIDGIKITREDPEDFDTRFYFDASVDSAAMTVIGNIHENPELMEVAE"
     gene            452..661
                     /locus_tag="U0342_002743"
     CDS             452..661
                     /locus_tag="U0342_002743"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731494.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424071.1"
                     /translation="MNDKKVRFYVSTGMHGSLETETFLLKADLNIEFDILTPEQLEKE
                     ITESYDDWLANNIDSGWSIEKEVEE"
     gene            658..846
                     /locus_tag="U0342_002744"
     CDS             658..846
                     /locus_tag="U0342_002744"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424072.1"
                     /translation="MKKYELIMTREEVYHLHRVLMQDIILSTWGVSTKDPEDEEAFLA
                     HIELSKGLARKVTRSEVK"
     gene            846..1178
                     /locus_tag="U0342_002745"
     CDS             846..1178
                     /locus_tag="U0342_002745"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930675.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424073.1"
                     /translation="MPGLIAKQPNGLYCRISTVVEAQTHHDMTKEELEYYLINERSLD
                     INLVTLDDWLAFYEVDFNVAIKQLGSGSGNLTFEEAKAWLIEVGYQHADKFMEKIAYK
                     WDEWEEGK"
     gene            1175..1450
                     /locus_tag="U0342_002746"
     CDS             1175..1450
                     /locus_tag="U0342_002746"
                     /inference="COORDINATES: protein motif:HMM:NF019467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM2424074.1"
                     /translation="MKKITQEYVEGVKDYNGLTVIKAPVVSEAVADWFEANKDNLGLE
                     IWMYIYNFDKHKNDCDSFCMFMNDKSGKQLETLISMQYGYYVQKEES"
     gene            1770..2021
                     /locus_tag="U0342_002747"
     CDS             1770..2021
                     /locus_tag="U0342_002747"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731500.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3850 domain-containing protein"
                     /protein_id="HEM2424075.1"
                     /translation="MTVHKLKILPEFFEKKRTLVKAFEIRKNDRNFEVGDTLVLQEFD
                     NGEYTGREYWEDVVYITDYLQKEGIVVMGTLPNEREYPF"
     gene            2033..2593
                     /locus_tag="U0342_002748"
     CDS             2033..2593
                     /locus_tag="U0342_002748"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987346.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424076.1"
                     /translation="MYKTEKRTLRQNKMIHALISDIVKHTYNDFEATKPRSFSNDCRV
                     VKETLKVAYAAEANLPGDFSTAKLSKIQARDFISSIIEFCFQFDIPLSASGLQMTDDI
                     NRYLFLCIKYRKCAVTGRRGEIHHVDPVGAGRDRRNYDHSKSRLICLSREMHTEAHQI
                     GWLTFKSKYHVDGIILSPEAVKELNI"
     gene            2674..3096
                     /locus_tag="U0342_002749"
     CDS             2674..3096
                     /locus_tag="U0342_002749"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731502.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424077.1"
                     /translation="MALFELPQIDNVRTKRNVIRALEKYKIMRVRLGERRMPKLTSTL
                     TIVPPSFNNEFHSTTEESAIWNVDAVNEAKAYVKLIDHHINQLPERSRQVILTKFIEE
                     NSDYEAMLAIHVSHSQYKEEKRKAIERLAYQLNIVVEK"
     gene            3109..>3750
                     /locus_tag="U0342_002750"
     CDS             3109..>3750
                     /locus_tag="U0342_002750"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731503.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rha family transcriptional regulator"
                     /protein_id="HEM2424078.1"
                     /translation="MNNLAVLDKNNTLNSREVAEMVEKRHSDLLRDIETYIRYINQNA
                     KLRSDDFFSESTYQAGTGKDYKCYEITKMGCEMIANKLTGAKGIQFTALFVQKFNKLE
                     AKEMQTFYIPGTYAEALTLAAKQAELNEQLMLENEVKTQTIAEYEPKVSYYDQILKSP
                     GLITVTQIAADYDLTAHKLNKILYEEQVQHKVGGQWILYKKHMNLGLTKSETVS"
BASE COUNT         1434 a          531 c          804 g          981 t
ORIGIN      
        1 ttgaggatag cgctactttc atttttgcag atgaacgaaa aggcgctagc acattaactt
       61 atgcacattt tattattaat aacatgcacg cgatagacga aaaaacactt ggaagctgta
      121 taggtcgcga agatgaagac gaaaaaacta tttttgaaaa tgacattgtg caagtagttt
      181 tagaacactg gccaatggga tactaccaag aagtagaata cattggagtg gttaaatatg
      241 acacggatat atgtgcgtat tatcttgatt tgattaagcc tcctgctgtt agtggcgaaa
      301 cgataccgga tgaaatcgac ggaattaaaa ttacaagaga agacccggaa gatttcgata
      361 ccagattcta ctttgatgct agcgttgatt cagcagctat gacagttata ggcaacatac
      421 acgaaaatcc ggaattgatg gaggtggcgg aatgaacgat aaaaaagtaa gattctacgt
      481 ttctactggt atgcacggat cgcttgaaac agaaacattt cttttgaaag cggacttgaa
      541 tattgagttc gatatattaa cacctgaaca attagaaaaa gagattacag agtcttacga
      601 cgactggtta gcaaataata ttgattctgg ctggtctatc gagaaagagg tggaggaatg
      661 aaaaaatacg aattaatcat gacgagagaa gaagtttatc atctccatcg tgtcttaatg
      721 caagatataa tactcagcac gtggggggta agcactaagg acccggaaga tgaagaagct
      781 tttttagctc atatagagtt gagtaagggt ttggcaagaa aagttacgcg atcggaggtt
      841 aaataatgcc aggattaatt gctaaacaac caaacggatt atattgtcga atatcaactg
      901 tagtagaagc gcaaacgcat cacgacatga cgaaagagga attagaatat tatttaatta
      961 atgaaaggtc attagatata aatcttgtaa cgttagatga ttggttagca ttctatgaag
     1021 tcgatttcaa tgtagctatt aaacaactcg gttcaggttc agggaattta acttttgaag
     1081 aagctaaagc atggctgata gaagttggtt atcaacatgc agacaaattt atggagaaaa
     1141 tagcgtataa gtgggatgag tgggaggaag gcaaatgaaa aaaataacac aagaatatgt
     1201 agaaggcgtc aaagattata atggattaac ggtgattaaa gcgccagtgg tttcggaagc
     1261 tgtagctgat tggtttgaag caaataagga taatttagga ttagaaattt ggatgtacat
     1321 ttacaatttt gataaacaca aaaatgattg tgatagcttt tgtatgttta tgaatgataa
     1381 atcaggaaaa caattggaaa cactaatatc tatgcaatac ggctattatg tgcagaagga
     1441 ggaaagttaa acggaaatgg attctaaaaa tagagataac aaaagtatag gaggacgaat
     1501 gtatgggcga aacaactgaa atgattttag agggtatttt gtgtgaaaat tgcggagtat
     1561 tcatagatga tgcaaatccg ggatatccga gaacatgtga agattgcgag gaagataata
     1621 atgaaaaacg gtaaaaagtt aaccagaaac caagcaatga tgctaaaaaa taatggtctt
     1681 aatccggata attggctcat agtaaaaaat cttaataatc gaatggagat agtacaccga
     1741 gaaaccggaa atacaaaggt gatttataaa tgacagtaca caaattaaag attttacccg
     1801 agtttttcga gaaaaaaaga acacttgtaa aagcgttcga aataagaaag aatgatcgta
     1861 atttcgaagt gggtgacacg ctggtattac aagaatttga taacggggaa tatactgggc
     1921 gagagtattg ggaagatgtt gtttatatta ccgactactt gcaaaaagaa ggaattgtag
     1981 tcatgggtac actaccaaat gagcgagaat atccgtttta aagggtgatg acatgtataa
     2041 aacagaaaaa cgaacattac ggcaaaacaa aatgattcat gctttgatta gtgacatagt
     2101 aaagcacact tataacgatt ttgaagctac aaagccgaga agcttcagca atgattgccg
     2161 agtagttaaa gaaacgttaa aagtagcgta tgcagctgaa gcgaatttac cgggtgattt
     2221 cagtacagcg aagttatcaa aaatacaagc tcgcgacttc ataagttcta ttatagagtt
     2281 ttgttttcaa tttgatatac cgttatccgc atcaggactg caaatgacgg atgatatcaa
     2341 tagatacctg ttcttatgta tcaaatacag aaaatgcgct gtaacaggtc gtagaggcga
     2401 aatacatcat gttgatcccg taggtgctgg aagagataga agaaattatg atcacagtaa
     2461 atcaagatta atctgtttat ctcgagaaat gcacacagaa gctcaccaaa tcggatggct
     2521 aacatttaaa agtaaatacc atgttgatgg aataatttta agtccggaag cagtaaaaga
     2581 attaaatata taaaaaaagc cagagcgacc gctccggcgt ggaatgtgat tcctagacaa
     2641 aatcattata ccacaatgga ggggttgcgt gtgatggcgc tgttcgaact accacaaatt
     2701 gacaatgtta gaacaaaaag aaacgtaata agagctttag aaaaatataa aattatgaga
     2761 gttagactcg gcgagagaag aatgccaaag ttaacttcta cattgaccat agtgccacca
     2821 tcatttaata atgaattcca ttctacgacg gaagaaagtg caatatggaa tgtagatgca
     2881 gtaaatgaag caaaagcata tgttaaattg attgatcatc acatcaacca acttcctgaa
     2941 cggagtaggc aagtgatact aactaaattc attgaagaaa atagtgatta tgaagctatg
     3001 ttggccatac atgtaagcca ctcgcaatat aaagaagaaa agagaaaagc aattgaacgt
     3061 ctagcctacc aacttaatat agtagttgaa aaatgaggag ggaacacaat gaataattta
     3121 gcagtattag ataaaaataa tacattaaac agtcgtgaag ttgctgaaat ggtagaaaaa
     3181 agacactctg atttactgcg tgatatcgaa acgtatatta gatatatcaa tcaaaacgca
     3241 aaattgcgtt ctgatgattt tttcagtgaa tctacttatc aagctggcac cgggaaagat
     3301 tataagtgct atgaaattac aaaaatgggc tgtgaaatga tagcgaataa attaactggg
     3361 gcaaaaggca ttcagtttac agctttattt gtacaaaagt tcaacaaatt agaagcaaag
     3421 gaaatgcaaa ctttctatat cccaggaact tacgctgaag cacttacact tgcagcaaaa
     3481 caagctgaac taaatgagca gttaatgtta gaaaatgaag taaaaacaca aactatagcc
     3541 gaatatgaac caaaagtgag ttattatgat cagattttaa aatctcctgg attaataact
     3601 gttacgcaaa ttgcagctga ttatgacttg accgcacata agctcaataa aatattatac
     3661 gaagagcagg tgcagcataa agttggtggt cagtggatat tatacaaaaa acatatgaat
     3721 ttaggtttga ctaaatcaga aacggtcagc
//
LOCUS       DASEAA010000221         3711 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.222, whole genome shotgun sequence.
ACCESSION   DASEAA010000221 DASEAA010000000
VERSION     DASEAA010000221.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3711)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3711)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3711
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.222"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1198)
                     /locus_tag="U0342_002751"
     CDS             complement(<1..1198)
                     /locus_tag="U0342_002751"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987342.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2424079.1"
                     /translation="MKTIKLLKLQLENFKGIKELEIDFQDNTSIYGANASGKTTILDA
                     FTWLLFDKDSTNKKDFAIKTLDTEGNVIHKLNHVVTAVLNIDGEQIELSKKYMEKWTK
                     SRGKLEQELTSHTTEYYIDEIKKKANEYKSFISELLDEELFKLITNPLYFNEQFDWKK
                     RRAMLIKIAGDVTDAEVMSADDSLKDLRIFLGKHSIEDKLIQINEQRKNLRKRLELIP
                     ELVNEASKAKQDTTGLNPSDLSGELTVIEEQIQLIEQEKITLKNGGIQTELNKQKANI
                     ELELTKIKANEQKEVQEQLMNKKEEIFTERNGLKNVENEIVESAFLIQRKQEELATKH
                     QELIKLGNEWDTLQVERFDEHRKSCPTCGQDFPSNHLNSMIEKFNQEKAEKIKANELA
                     GKSTKDE"
     gene            complement(1185..1526)
                     /locus_tag="U0342_002752"
     CDS             complement(1185..1526)
                     /locus_tag="U0342_002752"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731478.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424080.1"
                     /translation="MTQKSIEEVKFEEAKKLITELQAIATFNESITCAVNVSFNDGKG
                     IHSASSAIGGKSELLKMYGDIAEAIVYEFMKDHDCVCNVNETIEHAIEGALNGFQNFK
                     QDAKEKTDENN"
     gene            complement(1544..1771)
                     /locus_tag="U0342_002753"
     CDS             complement(1544..1771)
                     /locus_tag="U0342_002753"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731477.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424081.1"
                     /translation="MQIKTNELIEILKNSRTHSLERVKALEINLFKYKRLNTKPPAQL
                     TERIANHEKKIETIKKLEDELKQSENEVCKF"
     gene            complement(1951..2235)
                     /locus_tag="U0342_002754"
     CDS             complement(1951..2235)
                     /locus_tag="U0342_002754"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424082.1"
                     /translation="MEEIRPLYKKIKIEDTTYIVTLTPINDKSGKKTFKGIMVDMSLD
                     GEHFARDRFASNVDTGVIQNWMLNMHKASQKVERVLEAFEEWDGELNEFW"
     gene            complement(2385..2549)
                     /locus_tag="U0342_002755"
     CDS             complement(2385..2549)
                     /locus_tag="U0342_002755"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990851.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424083.1"
                     /translation="MLTAVLITLSLGIVMNIALYAYQKGWEKKNVDTDLDSDCVDTRV
                     TRSDKPNRKC"
     gene            complement(2543..2701)
                     /locus_tag="U0342_002756"
     CDS             complement(2543..2701)
                     /locus_tag="U0342_002756"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730305.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424084.1"
                     /translation="MSKVCDKENAVKVEIVYTELTQEQEQAMFNFFKSRSFPRIIKKL
                     EEEERKKC"
     gene            complement(2714..3238)
                     /locus_tag="U0342_002757"
     CDS             complement(2714..3238)
                     /locus_tag="U0342_002757"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731473.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424085.1"
                     /translation="MTVIKSSINASKVMRYVDNIPQKQLADLLLTSRPNVSHMQTGRR
                     RMQQDIATSALNNVQSNLFKLALTHEFSELIPDVFDGPAINKNSLSYLVMYEQEANEF
                     SANIDEIMRIFVKPASQLTQGERLTARDGLKELIDALGWGYNLLFYASDYLNIDAHKL
                     ISEQDESWKMKKWI"
     gene            complement(3315..3500)
                     /locus_tag="U0342_002758"
     CDS             complement(3315..3500)
                     /locus_tag="U0342_002758"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990848.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2424086.1"
                     /translation="MEWLKKYRLDKDLTQQEVADQCGIPKNTYASIEQGKRRPSPERA
                     KIIASNLGFDWTIFFNN"
BASE COUNT         1002 a          733 c          507 g         1469 t
ORIGIN      
        1 tttcatcttt tgtcgatttt ccagctagtt catttgcttt gattttctct gctttttcct
       61 gattaaattt ttcaatcata gaatttaaat gattagaagg gaaatcttgg ccacaagttg
      121 gacatgattt gcgatgttcg tcaaaacgct ctacttgcaa tgtatcccat tcattgccta
      181 gctttattaa ttcctgatgc ttggtagcta actcttcttg tttacgttga ataagaaaag
      241 cagattctac aatttcattt tctacatttt taagtccatt tctttcagta aatatttctt
      301 cctttttgtt catcagttgc tcttgtactt ctttttgctc atttgctttg atttttgtaa
      361 gctcaagttc aatattcgct ttttgcttat ttagttcggt ttgtattccg ccgtttttca
      421 aagtaatttt ttcttgttcg ataagttgaa tctgttcttc aattactgtt aattcccctg
      481 aaagatcact aggatttaag ccggtagtat cttgtttggc tttagaagct tcatttacaa
      541 gttcggggat aagttctaat cttttacgca agttcttgcg ctgttcatta atctgaatta
      601 atttatcttc aatcgagtgc tttccaagaa agatccttaa atctttcagt gaatcatctg
      661 cactcattac ttctgcgtct gttacatcgc ctgcgatttt aattagcatt gcacgtcttt
      721 ttttccagtc aaactgttca ttgaagtaca atgggttagt aattagtttg aaaagttcct
      781 cgtctagtag ctcgctaata aatgacttgt attcattcgc tttctttttg atctcgtcga
      841 tataatattc tgtagtatga cttgttaact cttgttctag ttttcctctt gatttggtcc
      901 acttctccat atatttttta gataattcta tttgctcgcc gtcgatattc aatactgcag
      961 ttacaacatg attcaacttg tgaataacgt tgccttcagt atccagcgtt ttaatagcaa
     1021 agtctttttt atttgtgctg tctttatcga ataaaagcca agtaaaagca tctagtatcg
     1081 ttgttttccc cgaagcattc gctccgtata ttgatgtatt atcttgaaaa tcaatttcta
     1141 gttccttgat acctttaaaa ttttctagtt gaagctttag caatttaatt gttttcatct
     1201 gttttctcct ttgcatcttg tttgaaattt tgaaatccat ttaatgcccc ttctattgca
     1261 tgttcaatgg tttcattcac gttgcacaca caatcatggt ccttcataaa ttcatataca
     1321 attgcttcgg cgatgtcccc atacatcttt aagagttcgc ttttccctcc aattgcagat
     1381 gacgcactgt gtataccttt tccatcattg aagcttacat tcacggcaca agttatgctt
     1441 tcattaaatg tagcaattgc ttgtaactca gttattaatt tttttgcctc ttcaaatttc
     1501 acttcttcaa tacttttttg tgtcatcttg aatcctccaa tttttaaaat ttacaaactt
     1561 cattttctga ttgcttcaat tcgtcttcta atttttttat tgtttcaatc ttcttctcgt
     1621 gattagcaat cctttcagtt agttgtgccg gtggtttcgt gtttaatcgt ttgtacttga
     1681 ataaattaat ctctaaagcc ttgacccttt ctaatgagtg ggttcttgaa ttctttaaaa
     1741 tttcaatgag ctcattagtc ttaatttgca taataaagac ccctttctaa aaaaataaat
     1801 ttgtcaaaac ggggctaatc gcatatacta taagtaattc aactcttata tttagcgaat
     1861 agctatctat gtcagactcg tgttagcgca cgagtttatt tttttgtcgt tacaatcatt
     1921 actccttcta caatcgtgat gctttgtgta tcaccagaat tcattcaatt caccatccca
     1981 ctcttcaaaa gcctcaagaa ctctttcaac tttctgcgat gctttatgca tgttcaacat
     2041 ccaattttga ataactccag tgtctacatt tgaagcaaat ctatctctag caaaatgttc
     2101 accgtctaag gacatatcta ccatgattcc tttgaaagtt ttctttccgc tcttatcatt
     2161 gataggtgtt aaagtcacaa tatacgtagt atcttcaatc ttaatttttt tatacagtgg
     2221 tcttatttcc tccattttct aaatcctcct tcttcgcttt taaaagccac tattaatgct
     2281 acaaacactc caaatccaac aaacaataat cctatattca tttgtaaatc cagctttcat
     2341 accagttagc caagccaact ttttttatct tcttgtataa ccttttagca ttttctatta
     2401 ggtttatcag accgagtaac acgagtatcc acacaatcgc tatccaaatc ggtatcgaca
     2461 tttttctttt cccaaccctt ctgatacgca taaagcgcta tattcattac aattccaaga
     2521 ctcagtgtga ttaatactgc tgttaacatt tttttcgctc ctcttcttct agttttttta
     2581 ttattcgcgg aaaagagcgg cttttaaaga agttaaacat agcttgttct tgctcttgag
     2641 ttagttctgt ataaactatt tcaaccttca cagcattttc cttatcacaa actttgctca
     2701 tatttccaac acctcaaatc cattttttca ttttccagct ttcatcttgc tcacttatta
     2761 atttatgtgc atcaatgttt agataatcac ttgcataaaa taaaaggtta taaccccaac
     2821 caagcgcatc gattaattcc ttcaaaccat ctcttgcggt tagcctttct ccttgtgtta
     2881 attggcttgc tggctttaca aaaatcctca ttatctcgtc aatatttgca ctgaattcat
     2941 tagcttcttg ttcatacatg acaagatatg ataacgaatt tttattaatt gcaggaccgt
     3001 caaaaacatc tggaattaat tcactaaatt catgcgttag tgctaatttg aataaattac
     3061 tttgcacatt atttaatgct gaagttgcaa tatcttgctg catccttctt ctacctgttt
     3121 gcatatggct tacattaggt ctacttgtca aaagtaaatc cgctaattgt ttttgaggaa
     3181 tattatccac ataacgcata acttttgatg cgttaattga agatttaatt actgtcactt
     3241 gctctccttt ccgatgtatc atttttttta cgcatgatac atatccttaa gttaaaataa
     3301 tacatatcgc gtacttaatt gttaaaaaaa atagtccagt cgaatcccaa attgctcgcg
     3361 attattttcg cgcgttcggg agaaggccgt cttttaccct gttcaataga tgcatatgtg
     3421 tttttaggta taccgcattg atcagctact tcctgttgtg tcaagtcttt atctaatcta
     3481 tatttcttta accactccat gttagcaccc ctttctaagt agtacgaatt gcgtactttt
     3541 ataataatac gcattttgta ttatgtcaat agataaatac tctttttgta ttgtttttta
     3601 atttaaaata gtaagtacgc aatttgtata gtataatccg aaacgaggag gtgcacatat
     3661 gttcgcatta agaattaaag aattgagaaa agaaagtaaa aaaacacaag a
//
LOCUS       DASEAA010000222         3694 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.223, whole genome shotgun sequence.
ACCESSION   DASEAA010000222 DASEAA010000000
VERSION     DASEAA010000222.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3694)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3694)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3694
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.223"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(12..320)
                     /locus_tag="U0342_002759"
     CDS             complement(12..320)
                     /locus_tag="U0342_002759"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465785.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="metal-sulfur cluster assembly factor"
                     /protein_id="HEM2424087.1"
                     /translation="MDEQLKENLMGALEQVIDPELGIDIVNIGLVYDVELDDDGLCTV
                     SMTLTTMGCPLAGILTEQVQMALSDIPEVKDTNVNLVWNPPWTKDRMSRYAKIALGIR
                     "
     gene            complement(385..1137)
                     /gene="yjfP"
                     /locus_tag="U0342_002760"
     CDS             complement(385..1137)
                     /gene="yjfP"
                     /locus_tag="U0342_002760"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465786.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="esterase"
                     /protein_id="HEM2424088.1"
                     /translation="MIQVENEQIAGIPVLHISNSENADQMLPTIIFYHGFTSQKELYL
                     HYGYLLAQRGFRVVLPDAKLHGERLQGANPEDQATFFWDVIETNIIEFPLITNELIKA
                     GKTDANRIGVGGVSMGAITSLGLLGQYENIKVAVSLMGSAYYVDFAKELSKYALAQGL
                     TFPYDVDERILTLQKYDLTQNITKINNRPLLLWHGKKDDVVPFAYSEKLYQTLVEESL
                     ADNVQFIIDDNAKHKVSVEGMLQGVSFFEKFL"
     gene            1256..2101
                     /locus_tag="U0342_002761"
     CDS             1256..2101
                     /locus_tag="U0342_002761"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465787.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2424089.1"
                     /translation="MNQPYELKEQTMSKKLIVLDLDGTTLRDDLTISSHTKKTLEKAR
                     MAGHEVMIATGRPYRISGSYYHELGLTTPIVNFNGAVYHHPRLTTFAEGYHHAIDLQV
                     VHELLDFSNGFSLDNIAAEVQDNVFLKERNNSVPETFHLGTENIVFGNIRDAIKSDAT
                     SLLFFGKIDQLDLISKHLDESLSGVISHHTWGASAWPAVEIIKFGIHKAIGVQAAAKT
                     LGFDRKDIIAFGDETNDLQMLDYAGVGVAMGNAAESVKNVANVVTASNQDDGIALYLE
                     ENLNL"
     gene            complement(2179..3081)
                     /locus_tag="U0342_002762"
     CDS             complement(2179..3081)
                     /locus_tag="U0342_002762"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YitT family protein"
                     /protein_id="HEM2424090.1"
                     /translation="MSSKIVYKEYAKKTAIAIIAALLNAIGMNFFLIPAQVYAAGLNG
                     VAQLGSDMLRDSMNISISTGLLVLLLNIPVAILGWLKVGKSFTVFSFLTVAFMSFFLI
                     VIPEVQVSSDILLNAIFGALIASVGIGLALKFGISTGGLDIVAMYITIKTGRSFGKYF
                     LLLNGVIIIVAGFAYDWTFALYTLISLYVQSRVIDIIHTRHQKLTVMIMTQHSETVIK
                     AIHENMVRGITVVDAMGGYSKEDVAMLIMVITRYELYDITHIVGEFDSKAFINVMETS
                     SVFGDFRSEADQKLAMAMYKNKMM"
     gene            complement(3165..3527)
                     /locus_tag="U0342_002763"
     CDS             complement(3165..3527)
                     /locus_tag="U0342_002763"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YisL family protein"
                     /protein_id="HEM2424091.1"
                     /translation="MWGYIHLISWVAIVVLTVTALLIYSKSTKSFTMLQMINRVFYIL
                     VILSGIMMVKYSIEQSWILAIFKILMGIIVIGVVEMLLSYRKQQKPTGMFLMIFVIVV
                     VITISLGFYLSGGYPLFN"
     gene            complement(3547..>3694)
                     /locus_tag="U0342_002764"
     CDS             complement(3547..>3694)
                     /locus_tag="U0342_002764"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEM2424092.1"
                     /translation="LLPGDVIATGTPSGVGKGMTPPTFLQAGDVVEITIDKIGTLTNK
                     VRKS"
BASE COUNT         1184 a          747 c          573 g         1190 t
ORIGIN      
        1 ttttatttaa ttcaacgtat accaagcgct atttttgcat agcgtgacat acgatcttta
       61 gtccaaggtg gattccaaac aagatttaca tttgtatctt tcacttctgg aatatcacta
      121 agtgccattt gtacttgctc agtcaaaata ccagcaagtg gacatcccat tgttgtaagc
      181 gtcattgata ctgtgcaaag gccgtcatca tctaattcaa catcgtatac aagaccaata
      241 ttcacaatat caattccaag ttctggatcg ataacttgtt ctagtgcgcc cattaaattt
      301 tctttcagtt gctcatccat gaagcatatg cctccttttt gccattttgt acatttattg
      361 tatcatatat gagaatgatt ttcattataa gaatttctcg aaaaagctta caccttgtag
      421 cattccttcg accgaaactt tgtgtttcgc attgtcgtcg atgataaatt gcacattatc
      481 tgccaagctt tcttctacta atgtttggta taacttttcg ctgtacgcaa aaggtaccac
      541 atcgtctttt ttgccatgcc aaagtaacaa tggtcggtta tttattttgg tgatattttg
      601 ggtcaaatca tatttttgta aagttaaaat tcgctcatcc acgtcatacg ggaaagttaa
      661 cccttgcgcc aatgcatatt tagataactc cttagcaaaa tcaacgtaat aagcacttcc
      721 cattaaactg accgctactt taatattttc atattgccca agaaggccaa gcgaagtaat
      781 agctcccatg gaaactccgc caactccaat acgattagca tccgtttttc cagctttaat
      841 taattcatta gtaattagag ggaattctat aatatttgtc tcaataacat cccaaaagaa
      901 tgtagcctga tcttccggat tcgctccttg tagacgctca ccatgcaact ttgcatccgg
      961 caaaactact cgaaagccac gctgcgcaag tagataacca taatgtaaat ataattcttt
     1021 ttgagaagta aatccatgat aaaaaataat cgttggtaac atttgatcag cattttcact
     1081 attactaata tgtaaaactg gtattcccgc aatttgttca ttttccactt gaatcattgt
     1141 gaagcctcat ttctattgag tttattaagc tactgtaaag gtcggaatca tttacaaatt
     1201 tgtgataaac gtctatcatt gatgtgtgcc cttattttag catgaagggg cagctttgaa
     1261 ccaaccatat gaattaaagg agcaaactat gtctaaaaaa ttaatcgtac tagatcttga
     1321 tggaacaaca cttagagatg atttaactat ctcctcccat acaaaaaaaa ctttagaaaa
     1381 agcccgcatg gccggtcacg aagtaatgat tgcaacggga cgcccatatc gaataagtgg
     1441 ctcttattac catgaactcg gattaacaac gccgattgta aatttcaacg gtgccgtcta
     1501 tcaccatcct agacttacta ccttcgctga gggctatcat catgccattg atttacaagt
     1561 tgttcatgag ttactcgatt tttcaaacgg cttttcatta gataatatcg cagcagaggt
     1621 gcaagataat gtcttcttaa aagaacgaaa caacagcgtt cctgaaacat tccacttagg
     1681 cactgaaaat attgtctttg gaaacatccg tgatgctatt aaatcagatg ctacttcttt
     1741 actgtttttt ggaaaaattg accaacttga tttaattagc aaacacttgg atgaatctct
     1801 ttccggcgtt atttctcacc atacatgggg agcatctgct tggccagccg ttgaaattat
     1861 taaattcggt attcataaag ctattggcgt gcaagcagcg gctaaaacac tcggctttga
     1921 tcgtaaagat atcattgcat ttggcgatga aacgaatgat ttacaaatgc ttgattacgc
     1981 tggtgttggg gttgctatgg gaaatgctgc cgagtctgtt aaaaatgtgg caaacgtggt
     2041 aactgcttct aatcaagatg atggtatagc actctattta gaagaaaatt taaacttata
     2101 ataaaaagct gcaagtaagg tcttacaaaa gttaggaata ctaatttttg attcaagagc
     2161 cattactttg cagctttttt acatcatttt atttttatac atcgccattg ctaatttttg
     2221 atctgcttct gaacgaaaat caccgaatac gcttgaggtc tccataacat taataaatgc
     2281 tttagagtca aactcgccaa caatgtgcgt aatatcatat agttcataac gcgtaatcac
     2341 cataatcagc attgctacgt cttcttttga ataaccaccc atcgcatcca caactgtaat
     2401 tcctcgtacc atgttctcat ggattgcttt gattactgtt tcagagtgtt gtgtcattat
     2461 catgacagtc agcttctgat gtcttgtatg aataatgtca ataactctac tctgaacata
     2521 taaagaaatg agcgtgtata gcgcaaatgt ccaatcatat gcaaaacctg caacaattat
     2581 aataactcca tttaaaagca agaaatattt cccaaaagaa cgccctgttt taatagtgat
     2641 atacattgct actatatcta atccgccagt agaaataccg aatttcaaag ccagaccaat
     2701 acctacagat gcaattaaag ccccaaaaat cgcattaagc aaaatatcac tagatacttg
     2761 cacctctggg ataacaatca agaaaaagga cataaaagca actgttaaaa aactaaaaac
     2821 agtaaatgat tttcctactt ttaaccaccc taaaatcgcc actggaatat ttaataacag
     2881 aacaagtagt cctgttgaaa tagaaatatt cattgaatct cgtaacatgt ctgaacctag
     2941 ttgtgcaacc ccatttaatc cagctgcata aacttgtgct ggtattaaaa agaagttcat
     3001 gcctattgcg tttaaaagtg ctgctattat tgcaatggcg gtttttttag catactcttt
     3061 atatactatt tttgaactca ttttcttctc tccttttttg gccctaacat aacataccaa
     3121 ctttctagag aaaagagaag tcttttttat tatttttttg atttttaatt aaataatgga
     3181 tatccgcctg ataaatagaa gcctaatgag atggtaatca ctacgacaat aacaaaaatc
     3241 atcaaaaaca ttcctgttgg tttttgttgt ttcctgtaac taagtagcat ctccactaca
     3301 ccaattacaa tgattcccat cagaatttta aatattgcca gaatccaact ttgctctatg
     3361 ctgtatttga ccatcataat tccactcaaa ataaccagaa tataaaaaac tcgattgatc
     3421 atttgcaaca ttgtaaaact ttttgtcgat ttcgaataaa tgagtaaagc tgtaactgtt
     3481 agtacaacaa tagccaccca tgaaatcaaa tgaatataac cccacataat acatccctct
     3541 ttcttattaa gattttctta ctttgttagt cagtgtccca attttatcaa tagtaatttc
     3601 gacaacatct ccagcttgca gaaaagttgg aggtgtcatg cctttcccca caccacttgg
     3661 agttcctgta gctatcacat ccccaggcaa caat
//
LOCUS       DASEAA010000223         3664 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.224, whole genome shotgun sequence.
ACCESSION   DASEAA010000223 DASEAA010000000
VERSION     DASEAA010000223.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3664
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.224"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(65..844)
                     /locus_tag="U0342_002765"
     CDS             complement(65..844)
                     /locus_tag="U0342_002765"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463813.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carbon-nitrogen family hydrolase"
                     /protein_id="HEM2424093.1"
                     /translation="MWKLALCQTDVVFKYPDANYARIEKAIVEAAKNGADIAVLPEMW
                     NTGYALNELAGVADLNGERTKEFLATLSEKHQIAIIGGSVSISEGTKFSNTMYAFDKY
                     GGLLSSYKKVHLFQLMNEHLYLEAGNDKNLFRLDGVSCAGFICYDIRFPEWIRKHTSE
                     GSEVIFVSAQWPAERVTQWEQLLIARAIENQAFVVAVNRVGDDPNNHFNGHSLVIDPL
                     GNIVAHGGEDEGNIYAEIDLKLVAETRGIIPVFTDRRPELY"
     gene            complement(934..1596)
                     /locus_tag="U0342_002766"
     CDS             complement(934..1596)
                     /locus_tag="U0342_002766"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463814.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2424094.1"
                     /translation="MSLFFEEWGPILWQGFLETLTMTGITLVISLAIGLPLGVFLTLT
                     RKGGQSENLVAYSILNWVINILRSLPFIILLFLMIPVTRFVVGTTIGIQGVIMPLVVF
                     TAPYIARLMESALLEVDRGVVEAYQAMGISTPKIIWSVVIREARSGIVLGLTIATIGL
                     IGATAMAGLVGAGGLGTIAYQYGFQRFEPTVMYTTIIILIIMVQALQSFGNFLSRRLK
                     KD"
     gene            complement(1593..2609)
                     /locus_tag="U0342_002767"
     CDS             complement(1593..2609)
                     /locus_tag="U0342_002767"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463815.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methionine ABC transporter ATP-binding protein"
                     /protein_id="HEM2424095.1"
                     /translation="MIELHQVSKSFNVNGKTVEAVKNVSITVEKGEIFGVVGYSGAGK
                     STLVRCINLLERPDAGQVVIDGKNLSTLSSKELRVARRKIGMIFQGYNLLKTATVYDN
                     IAKPLKLEGVPKDEIETRVNKYLSIVGLEDKRNNYPSQLSGGQKQRVAIARALAHEPE
                     ILLSDEATSALDPETTEAILQLLLKINAELGITIFLITHELDVIQRICDRVAVMENGH
                     LVEQGTVLDIFTKAKHSTTKRFVGSEASFDIPQDLLEKYVATGKLVSLHFIGDEADEP
                     ALALVSRKFDVLPSILAGGIDHLKNGTLGKLLVHLKGDEVEYSKAISYLKESGVVVEE
                     VELL"
     gene            complement(2624..3445)
                     /locus_tag="U0342_002768"
     CDS             complement(2624..3445)
                     /locus_tag="U0342_002768"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463816.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MetQ/NlpA family ABC transporter
                     substrate-binding protein"
                     /protein_id="HEM2424096.1"
                     /translation="MRKLTKGLGILLASSLVLGLAACGGGSDDKALSTEKITIGTTAG
                     PHQQIAEEVQKLAKKDGLEIKIKTFDDYNTPNTALNDGDLDANNYQTIPFLEQQKKDK
                     GYKLDVAFKTVAFPMGIYSNDIKDLKNLKKGDKIAVPNDPSNEYRGLKLFEDAGVIKL
                     KDGVEEKATKKDIAENPLDLEIVELEASQIPAQLDEVAAAAINTNFAMGAGLSINKDA
                     IYHEPTKDNPYPNVFVVRSANKDDEVVKTLEKYYHSAEVKAFIEKEFNGSVVPAF"
     regulatory      complement(3554..>3664)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
BASE COUNT         1088 a          773 c          645 g         1158 t
ORIGIN      
        1 ccgataatat gaacatttaa tgagaaaaag atgcaaaaaa tattattttg catcttttag
       61 ctatttagta aagctcaggt cgtctatctg tgaaaactgg aatgatgcct cgcgtttcag
      121 caacaagttt taagtcaatc tcagcataaa tatttccttc gtcttcaccg ccatgagcga
      181 caatatttcc aagtggatca atcacaagtg agtgcccatt gaaatgatta ttaggatcat
      241 cgccaactcg attgactgca acgacaaaag cttgattttc aatagcgcgt gcaataagta
      301 gttgctccca ctgagtaaca cgttcggctg gccactgagc tgaaacaaaa atgacttccg
      361 atccttctga agtgtgtttg cgaatccatt ctggaaatct aatatcatag caaatgaaac
      421 cagcgcaaga aacaccgtcc agtcgaaata gatttttatc attcccagcc tctaaataga
      481 gatgctcatt cataagctga aataagtgaa ccttcttata tgaagaaagt agtccaccat
      541 atttgtcgaa agcatacatt gtattagaaa atttggttcc ttccgaaata gagaccgagc
      601 caccgataat agcaatttgg tgtttttcag aaagtgttgc taaaaattct ttcgttctct
      661 ccccatttaa atcagcaacc ccagctaatt catttaaagc ataacctgta ttccacattt
      721 ctggtaaaac tgcgatatct gccccatttt ttgcagcttc aactatagct ttttcaatcc
      781 gtgcatagtt tgcatcagga tatttaaaaa ctacatcagt ttgacataat gccaacttcc
      841 acatgttctt cgctcccttt ttcttttaaa aataacacaa gcttggtgac gagtccatat
      901 tggaacactt cgcaccaagc tctaagtagt gaattaatct tttttaagac gtctagataa
      961 gaaattaccg aatgattgta gtgcttgaac catgataatt aaaataataa tggttgtata
     1021 catgacagtt ggttcaaaac gttggaaacc atattggtaa gcaattgttc cgagtccacc
     1081 agcaccaaca agtccagcca ttgcagtcgc gccgattaga ccgattgtag cgatagttaa
     1141 gccaagaacg ataccagacc gagcttcgcg aataacgaca ctccaaatga ttttcggtgt
     1201 agaaataccc attgcttgat aggcttccac aactccgcga tccacttcca aaagggcgga
     1261 ttccattaaa cgggcaatat aaggtgccgt aaatacgaca agtggcataa taaccccttg
     1321 aatcccaata gtagtcccaa caacaaaccg tgttacagga atcattaaga ataacaaaat
     1381 aataaacggt aatgaacgta aaatattaat aacccagttt agaatactgt aggcaaccag
     1441 gttttctgat tgaccacctt tacgcgttaa tgttaaaaat acgccaagtg gtaaaccaat
     1501 cgcaagtgaa atcacgagtg taatcccagt catcgtaagc gtttctagaa atccttgcca
     1561 aagtatcggg ccccattctt caaaaaacaa actcatagta actcgacctc ctcaacaacg
     1621 actccagatt ctttcaaata agaaatagct ttactgtatt caacttcgtc cccttttaaa
     1681 tgaacgagca gttttccaag tgttccgttt ttcaaatgat caattccccc agctaaaatg
     1741 cttggaagaa cgtcgaattt acgtgataca agagcgagcg caggctcatc cgcttcgtct
     1801 ccaataaaat gaagagaaac caatttccca gtcgcaacat atttttcaag caaatcttgc
     1861 gggatatcga aactagcttc cgatccaaca aagcgcttgg ttgtcgagtg ttttgctttt
     1921 gtaaaaatat caagaaccgt accttgttcc actaaatgac cattttccat tacagcaacc
     1981 cggtcacaaa tacgttgaat gacatcaagt tcatgtgtaa ttaagaaaat cgtaatgccg
     2041 agttccgcat taattttaag taacagttgc aaaattgctt ctgttgtttc agggtccaag
     2101 gcgcttgttg cttcatcgct taagagaatt tctggctcat gcgcaagagc acgagcaatc
     2161 gccacacgct gtttttgacc gccagaaagt tggcttggat agttgtttcg tttatcctct
     2221 aagccaacaa ttgacaagta tttatttacg cgcgtctcga tttcgtcttt tggaacgcct
     2281 tctaatttta atggtttggc aatgttatca tagacagttg cggtttttag taggttatat
     2341 ccttggaaaa tcatgccgat tttccggcga gcgacacgaa gttctttgct tgatagggta
     2401 gataagttct tcccatcaat cacaacttgg ccggcatctg gacgttcaag caggttgatg
     2461 caacgaacaa gggtactttt cccggcgcca ctgtaaccaa cgacaccgaa aatttctcct
     2521 ttttctactg taatagaaac atttttgacg gcttctacgg tttttccatt tacgttaaat
     2581 gattttgaaa cttgatgtaa ttcgatcaaa ataaaacaac tccctagaat gcaggtacta
     2641 cagacccatt aaattctttt tcaataaatg cttttacttc agctgaatgg taatattttt
     2701 ctaatgtttt tacgacttca tcgtctttgt tggcactacg aacaacgaaa acgtttggat
     2761 atggattgtc ttttgtaggt tcgtggtaaa tggcatcttt attaatagaa agtccagcgc
     2821 ccattgcaaa gttagtattg atagctgcgg ctgcaacttc atctaattgt gcaggtattt
     2881 gagaagcttc aagttcaacg atttcaaggt caagcgggtt ttcagcaatg tcttttttcg
     2941 ttgctttttc ttccacacca tcttttaatt taataacgcc agcatcttca aacagtttta
     3001 aaccacggta ttcgttactt ggatcatttg gaacggcaat tttgtcgcct tttttaagat
     3061 ttttcaagtc tttaatatcg ttggagtaaa tgcccattgg gaatgctact gttttaaaag
     3121 caacgtctaa tttgtagcct ttatctttct tttgttgctc taaaaatgga attgtttggt
     3181 agttattcgc atccaaatca ccatcattta aagctgtatt tggcgtgtta taatcatcaa
     3241 atgttttgat tttgatttca agaccgtctt ttttcgctaa tttttgaact tcttcagcga
     3301 tttgttggtg aggtcctgct gttgttccaa ttgtaatttt ttctgtgctt aaggctttgt
     3361 cgtcactgcc tcctccacat gctgctaatc ctaaaacaag acttgatgca agtaaaattc
     3421 ctaacccttt tgttaatttt ctcatctttt ttcctcccta gtatgttgtg tgattatcca
     3481 gatttattca tgaaaacaat aaaaaacttc tctatttaga atagagaagt ggaaagtcga
     3541 acatatccag ctcctcttat ctaccaaaat ggaatacacc attttgctgg aattagcacc
     3601 ttcactttac gcttaaataa agttaggttg ccgggcttca tcgggccagt ccctctgccg
     3661 ctct
//
LOCUS       DASEAA010000224         3660 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.225, whole genome shotgun sequence.
ACCESSION   DASEAA010000224 DASEAA010000000
VERSION     DASEAA010000224.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3660)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3660)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3660
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.225"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1127
                     /locus_tag="U0342_002769"
     CDS             <1..1127
                     /locus_tag="U0342_002769"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464467.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HSP90 family protein"
                     /protein_id="HEM2424097.1"
                     /translation="SKDQIIQYGEYILGTRFQDYFLIENESGRTFGIAYMIPHAVQMN
                     AIRKNTVFLNNMYVTSEANNILPDWSFFAKCVIWTDELQPVASREAFYKNERLTSVAD
                     ELGVALKKGIETLPEEALMKLLATHYLGFKALASEDAPFLKLIYPYLPVRTLNGEEKL
                     GDIIAKNDVIYYTYSVDDFRQIKDIARSSGMTLINGGYSYDSPILAQLSYFVEGTEFV
                     LIEPEEMTNKLRPMTVSEEQAYQPILTEMNSMMAEFDTDVLIKHFEPKDLPTIFIHST
                     ATQELRELERAVEETNSVFSDILESIQKEQEPAPLAHLYLNLDNELIKRLFTSGKTVK
                     ELSVIVNVLYIQALLLGHYPLKRKEMVLMNQNMLRILEML"
     gene            1139..2107
                     /locus_tag="U0342_002770"
     CDS             1139..2107
                     /locus_tag="U0342_002770"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464466.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424098.1"
                     /translation="MDYLNDLESVWGMDDTPEKIKVLERIIAGADLYNNIDDGIEARD
                     LLIDTCLTAGFPKKQLQAFSWLIKKWEDKDSDAYIDTEDLFWKYKWISEHVPTFDEVS
                     KAQIDGLLNDMKVKFEQENYSLRPYYKVCTLAAMRMGDVEKAKELFKKWSDTKADFLN
                     DCPACERNDQVHYYCFIKDYETAKKTAKPIIEGKQRCAEVPHLTYGNMALAYLALGDE
                     KMAQECFDKGYPLVEKQISLLPPLGQLLKYLVLTKQTEKAREVIDTNLETVLKAEGGL
                     DRLIFLQAAYPLFDREKEADLVEMTEALTAKFDARNGNSYYQDLLK"
     gene            2203..2949
                     /locus_tag="U0342_002771"
     CDS             2203..2949
                     /locus_tag="U0342_002771"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726335.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SMI1/KNR4 family protein"
                     /protein_id="HEM2424099.1"
                     /translation="MTIWVKNEKNGATEQVIREKEIALGVTLPFEYKQLLSEQNGGLI
                     RKNHFKTTEPTSYGLDFGEIYYLASLDEILTDIPEQKDVDLAGKQVYFHRDESRYIGF
                     SYIDNTSEPSIIYVDFETLQTLIVAETFATFIEELYFSPFPTDFAEHFPIKKLNQILA
                     SSNVQKTKQLLELLEDYPDKKWYLATFLGLLEKQEIPYNLVVYRLFENQLLYFRRKLA
                     PELVEQIFVRLEACDGINKAALAELYKEWK"
     gene            2962..3420
                     /locus_tag="U0342_002772"
     CDS             2962..3420
                     /locus_tag="U0342_002772"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464463.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="low molecular weight phosphotyrosine protein
                     phosphatase"
                     /protein_id="HEM2424100.1"
                     /translation="MLKVVFVCLGNICRSPMAEGLFRKEVAEAGLTNEIKIDSAATGT
                     WNLGKPPHRGTQAVLKKHGVDYQEMRARKISDVDFNEADFIIGMDQQNLADLNALNNN
                     PDVIVRSLMSFVPGQEDKDIPDPYYTGDFDETERMVTEGVKALLAYITKK"
     gene            3508..>3660
                     /locus_tag="U0342_002773"
     CDS             3508..>3660
                     /locus_tag="U0342_002773"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464462.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lmo0937 family membrane protein"
                     /protein_id="HEM2424101.1"
                     /translation="MLGIIWGIIVVLLAVWLLGIIFHIAGGLINILLVIVLILVIWNL
                     IQMARNK"
BASE COUNT         1219 a          553 c          768 g         1120 t
ORIGIN      
        1 tatcaaaaga tcaaattatt cagtacggcg aatatatcct tggaacgcgt ttccaagatt
       61 atttcttaat tgaaaatgag tcaggaagaa cgtttgggat tgcttatatg attcctcatg
      121 ctgttcaaat gaatgctatc cggaagaaca cggtattttt aaataatatg tatgtcacaa
      181 gtgaagcaaa taatattttg cctgattggt cgttttttgc taaatgcgtg atttggacgg
      241 atgagcttca acctgttgct tctcgtgagg cgttttataa aaatgagcga ttaactagtg
      301 ttgccgacga gcttggcgtt gctttgaaaa aaggaattga aactcttcca gaagaagcat
      361 tgatgaaatt attagctaca cattatcttg gttttaaagc acttgcgagt gaagatgcac
      421 catttttaaa attaatctat ccttatcttc cagttcggac tttgaatggc gaggaaaaat
      481 taggtgatat tatcgctaaa aatgatgtca tttattacac ctactcggtc gatgacttta
      541 gacaaattaa ggatattgct agatcaagcg gtatgacgct tattaacggc ggctattcct
      601 atgattcgcc aatcttagcg caattaagtt actttgttga ggggacagaa tttgttttaa
      661 tcgaaccgga agaaatgact aataaattac ggcctatgac agtgagcgaa gaacaggctt
      721 accaacctat tttgacagaa atgaatagta tgatggctga atttgataca gatgtattaa
      781 ttaaacattt tgaaccgaaa gatttaccga ctattttcat ccactctaca gcaacacaag
      841 aattacgcga actagaacgt gctgtcgaag aaacaaattc tgtttttagt gatattttag
      901 agagcatcca aaaagaacaa gaacctgcac cgcttgctca cttgtattta aatttggata
      961 acgagctgat taaaagactt ttcacttctg gaaaaacagt gaaagaattg tccgtaattg
     1021 tgaatgtact ttatatccaa gccttactat tagggcatta tccgcttaaa cggaaagaaa
     1081 tggtattaat gaatcaaaat atgttacgaa tcttagagat gctataggag gaagaaaaat
     1141 ggattatttg aatgatttag aatcagtttg gggaatggat gacacgcctg aaaaaataaa
     1201 agtattagaa cgaattattg ctggtgcaga tttgtataac aatatagatg atggcattga
     1261 agcacgtgat ctgttgattg acacatgctt aacagctggg tttccgaaaa agcaattaca
     1321 ggcttttagc tggttaatca aaaaatggga agacaaagat agtgatgctt acattgacac
     1381 ggaagatctt ttttggaaat ataaatggat tagtgaacat gtcccgactt ttgatgaagt
     1441 atcgaaagcg caaattgacg gacttttgaa tgatatgaag gtgaaattcg aacaagaaaa
     1501 ttattcgcta agaccttatt ataaagtgtg cacgcttgca gccatgcgta tgggcgatgt
     1561 tgaaaaagcc aaagagctat ttaaaaaatg gagtgatacg aaagcagact ttttaaatga
     1621 ctgtcctgct tgcgaaagaa atgatcaagt acattattat tgcttcatta aagactatga
     1681 aacagctaag aaaacagcaa aaccgattat tgaaggaaaa caacgctgtg cggaagttcc
     1741 tcatttaacg tatggaaata tggcgcttgc atatttagcg cttggagatg aaaaaatggc
     1801 gcaagaatgc tttgataaag gttatcccct tgtggagaaa caaatctcct tactaccacc
     1861 acttgggcaa ttacttaaat atttagtcct taccaagcaa acggaaaaag cgcgagaagt
     1921 gattgatacc aacttagaaa ctgttcttaa agctgagggt ggtttagacc gacttatttt
     1981 cttacaagca gcctaccctc ttttcgaccg agaaaaagaa gctgatttgg tagaaatgac
     2041 ggaagcttta acggcgaagt ttgatgcgcg gaatggaaat agttattatc aagatctttt
     2101 gaagtaaaat tttggaacat agttaggaat tatttctagc tatgttcttt tgtttgcgct
     2161 attttgcttt ttttaggata atacagggag gagttgaaga ggatgacgat ttgggttaaa
     2221 aacgaaaaga atggcgcaac tgaacaagta attcgtgaaa aagaaatagc gttaggcgtc
     2281 actttaccat ttgaatacaa acagctttta tcagagcaaa atggtggatt gattcgcaaa
     2341 aatcatttta agacgacgga accgacttct tatggactag attttggtga aatctattat
     2401 ctggctagtt tggatgaaat tttaacggat attccggaac aaaaggatgt tgatctcgca
     2461 gggaagcaag tttatttcca ccgggatgaa tcgcgctata ttggtttttc ttatatagat
     2521 aatacgtccg aacccagtat tatttatgtt gattttgaaa cgttacaaac acttattgtt
     2581 gctgaaacgt ttgctacatt tatagaggaa ttgtacttta gtccctttcc taccgatttc
     2641 gcggaacatt ttcccataaa aaaattaaat caaattctcg cttccagcaa tgtgcaaaaa
     2701 acaaaacaat tactggaact attagaagat tatccagata aaaagtggta tttagcgaca
     2761 tttttaggat tacttgaaaa acaagaaatc ccgtataatt tagttgtcta tcgtttgttt
     2821 gaaaatcaat tgctttattt ccggagaaaa ctcgcgcctg aacttgtgga gcaaattttc
     2881 gtccgactgg aagcatgtga tgggataaat aaagcggctc tggccgaatt atataaggaa
     2941 tggaaataag gaggaattca attgttaaaa gtagtttttg tctgtttagg gaatatttgt
     3001 cgttcaccaa tggctgaggg gttatttcgg aaagaagttg cagaagctgg gttaacgaat
     3061 gaaataaaaa ttgattctgc tgcaactggt acttggaatt tagggaaacc gccacaccgc
     3121 gggacgcaag cagtgttgaa aaagcatggt gttgattatc aagagatgcg agctcgaaaa
     3181 atttctgatg ttgattttaa cgaagctgat tttattatcg ggatggatca gcaaaattta
     3241 gcagatttaa atgcacttaa taataatcca gatgtcatcg ttcgctcgct tatgtccttt
     3301 gtgcctggtc aagaggataa agatattcca gacccatatt atacagggga ttttgatgaa
     3361 accgaacgca tggtaactga gggagtaaag gcccttttag cttatatcac aaaaaaatag
     3421 tctgttttta gccctaatat gtttaaagac tgacctcacg ggaatatata agagtacaat
     3481 caaaagtgca gaaagaggtt tttatacatg ttaggaatta tttggggaat catcgtagtt
     3541 ttattagcag tgtggttact tggaattatt ttccatattg cgggtggatt aattaatatc
     3601 ttgttagtaa tcgttttaat actcgttatt tggaacttaa ttcaaatggc tagaaataaa
//
LOCUS       DASEAA010000225         3606 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.226, whole genome shotgun sequence.
ACCESSION   DASEAA010000225 DASEAA010000000
VERSION     DASEAA010000225.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3606)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3606)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3606
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.226"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..476
                     /locus_tag="U0342_002774"
     CDS             <1..476
                     /locus_tag="U0342_002774"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="transcriptional regulator"
                     /protein_id="HEM2424102.1"
                     /translation="EQDLQQKIEELVGIQKTIQKIIHSQKEMRLNEITFVAKDNRYFK
                     KVPNQIIDHNTINYSQAAKHNLPDLEEPFYIFSKQDTGAICLKTIKKRSDYTFPAGEY
                     ACKSFIAKDEATVEAQIQLFLEELKHPTTSIILYENIYPSLAYPDAMVYTMEVPL"
     gene            473..1066
                     /locus_tag="U0342_002775"
     CDS             473..1066
                     /locus_tag="U0342_002775"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2424103.1"
                     /translation="MTLSIESIDSFEKDCIIEEIASLVFAGFKSKFTKMLYKETEAHD
                     IIYAFCHYIYTEKGENLLIAIQDELVCGCMFVTGKSDSHQKLYQNLRKFLPFSQCLKL
                     IFLLSLLSHKPVQNERYIDFITVSPNFRGQGIGKTLISHCLETFHDEKITLYVAKNNN
                     RAYKLYRNLGFQVIQKENSTLMGVLTGIKEWQKMEWI"
     gene            1042..2064
                     /locus_tag="U0342_002776"
     CDS             1042..2064
                     /locus_tag="U0342_002776"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464653.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="alpha/beta hydrolase"
                     /protein_id="HEM2424104.1"
                     /translation="MAKNGVDIMKRWKKITIVLSAIIVILVAILFIGNNFEMNETRVT
                     IPTTGGRLSAVVTTPKHEKPKGIIVFVHGDGAQEATQNGSYRPLMERFAKQGYISVSW
                     DKLGVGNSSGNWLNQSMEDRANEVNQVIEWMKVKYPDSTTKIGLWGASQAGWVIPKAM
                     NANNEIAFSILAAPAINWMRQGEYNTGWQAKDAGKTTKEVKQAQQNFLTDSALISKNK
                     TYESYKQNGGKEKMTPDRYNFIRKNMNQDATLDLSKVKAKIYLVLAEKDKNVDSAETK
                     DVYTQQIKKENLETKTVPNVSHQMINPAIANSELLIHIVGLMVPKYFLVDDAYLDYCE
                     QVFSKQ"
     gene            complement(2078..2533)
                     /locus_tag="U0342_002777"
     CDS             complement(2078..2533)
                     /locus_tag="U0342_002777"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464652.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MepB family protein"
                     /protein_id="HEM2424105.1"
                     /translation="MEYEQLLQSELGELEIIREELQNKEYRGMIVKTAKDGTMTRTRL
                     AKKTDKKAGYFVAFWEKDEFGKNCPFDENDSADFLCIVVIDDDLNGIFVFPRQCLIEK
                     GILTSEAGIGKMAARFYPTWCQDLNKTARKTQAWQQAYFKNYSIRKEDH"
     gene            complement(2533..2976)
                     /locus_tag="U0342_002778"
     CDS             complement(2533..2976)
                     /locus_tag="U0342_002778"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2424106.1"
                     /translation="MILINKRAEKLDYQTILAIWEKSVIATHDFLAAEDRQFYKEQIP
                     LFLDNVELFLWFAGEEVVGFSGTSERELDMLFLEPIATGNGYGSQILSWLIENKQINL
                     VDVNEQNENATRFYLKHGFVVSSRSDADGFGKPYPILHLQLKGES"
     gene            complement(2994..3332)
                     /locus_tag="U0342_002779"
     CDS             complement(2994..3332)
                     /locus_tag="U0342_002779"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424107.1"
                     /translation="MNEFPVVFEPEFMTIYLLVIISIFSTTLALSLEKYKFTIAGKAL
                     IGMCFISLFVLFVYIWVGGISSETNELIMSPIGILSVLLFTTHPYIFLILAILLGGEK
                     KPPHVPKPKK"
     gene            complement(3337..3540)
                     /locus_tag="U0342_002780"
     CDS             complement(3337..3540)
                     /locus_tag="U0342_002780"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724666.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="uridine kinase"
                     /protein_id="HEM2424108.1"
                     /translation="MYYENMGDSNTRGEKKINHTQKGKIDFTFFVFMLLTFNNSKNIK
                     GFLYLEQQRINSSVIQHNNFKGA"
BASE COUNT         1260 a          749 c          554 g         1043 t
ORIGIN      
        1 ctgaacaaga tttgcaacaa aaaatagaag agttagtagg aattcagaaa acgattcaaa
       61 aaatcatcca ttcgcaaaaa gaaatgcgtt taaatgaaat cacttttgta gctaaagaca
      121 atcgttattt taaaaaagtt cctaaccaaa taattgatca taacactatc aactactccc
      181 aagctgcaaa acacaattta ccagatttag aggaaccttt ttacattttc tccaaacaag
      241 acactggagc aatctgcctt aaaaccatta aaaaaagaag tgattatact tttccagctg
      301 gcgaatatgc ttgtaaatct tttattgcca aagatgaagc aactgttgaa gcgcaaatcc
      361 aactattttt agaagaatta aaacatccaa caacaagcat aattttatac gaaaacatct
      421 acccttcact cgcctatccg gacgcaatgg tttacacaat ggaagtgcca ttatgacact
      481 ttccattgaa agcatcgatt catttgaaaa agattgcatc attgaagaaa tagcgtcttt
      541 agttttcgca gggttcaaat caaagttcac aaaaatgcta tacaaagaaa cagaagcaca
      601 tgacattata tatgcttttt gccattacat ttatacagaa aaaggcgaaa acctactaat
      661 tgcaatacaa gatgagctag tttgcggttg catgtttgta acgggcaaga gtgactcaca
      721 tcaaaagcta tatcaaaacc taagaaaatt tttaccattt tcacagtgcc tcaaattaat
      781 tttcttactc agtcttctat cacacaaacc tgttcaaaat gaacgatata ttgactttat
      841 aaccgtttcg ccaaattttc gtggtcaagg tattggaaaa acgctaattt ctcattgcct
      901 agaaaccttt catgatgaaa agattactct atacgttgcc aagaacaata atcgtgccta
      961 caagctgtat agaaatttag gcttccaagt gattcaaaaa gaaaatagca cattgatggg
     1021 agtactcacc ggtatcaaag aatggcaaaa aatggagtgg atataatgaa acgttggaaa
     1081 aaaataacta tcgtattgag cgcaatcatc gtcatattag tggcgattct tttcatcgga
     1141 aacaatttcg aaatgaacga aacaagagtc acaatcccaa ctactggtgg aagactttct
     1201 gcggtcgtga caactccaaa acacgagaaa ccaaaaggca ttattgtgtt tgttcatggt
     1261 gacggggcac aagaagcaac tcaaaacggt agctatagac cgctaatgga acgctttgcc
     1321 aaacaaggat atatatctgt ttcttgggat aaattaggcg ttggtaactc ctcaggcaat
     1381 tggctaaatc agtccatgga agaccgcgca aacgaagtca accaagttat tgagtggatg
     1441 aaagtgaagt atcctgatag caccaccaaa atcggcttat ggggcgctag tcaagccggc
     1501 tgggtgatcc caaaagcaat gaatgcaaat aatgagattg ctttctcaat ccttgccgcc
     1561 cctgctatca actggatgcg acaaggagaa tataacaccg gctggcaagc gaaagacgct
     1621 ggtaaaacaa cgaaagaagt caagcaagca caacaaaatt tcctcaccga cagcgccctt
     1681 atttctaaaa acaaaaccta cgaaagctac aaacaaaatg gcggtaaaga aaaaatgacc
     1741 ccagatcgct acaactttat ccgcaaaaac atgaaccaag atgccaccct agacctttca
     1801 aaagtaaaag caaaaatcta cctcgtctta gctgaaaaag ataaaaatgt tgattcagca
     1861 gaaacaaaag atgtttacac ccaacaaatt aaaaaagaaa acctagaaac caaaaccgtc
     1921 ccaaatgtct cgcatcaaat gattaatcct gccatcgcta attcagagct actcatccat
     1981 attgttggct taatggttcc aaaatatttt ctagtagacg atgcttactt agattactgc
     2041 gagcaagtat tttctaaaca ataaaaagaa gacccaatta atggtcttct tttcttatag
     2101 aataattttt aaaatacgcc tgttgccaag cttgcgtttt tctcgctgtt ttatttaaat
     2161 cctgacacca cgttggataa aatctagcag ccatttttcc aataccagct tcactagtta
     2221 aaattccctt ttcaattaaa cactgccttg gaaaaacaaa tataccgttc aaatcatcat
     2281 caataacaac aatacataaa aaatcagcgc tatcattctc atcaaaagga caattcttac
     2341 caaattcatc tttctcccaa aaagcaacaa agtaccctgc ctttttatcc gttttcttcg
     2401 ccaaacgcgt acgagtcatt gtcccatctt tagccgtttt tacaatcatt cctcgatatt
     2461 ctttgttttg tagttcttcc cgaattattt caagttcacc aagttcgctt tgtaacagct
     2521 gttcatactc cattaactct ctcccttcag ttgcaaatga agaattggat aaggcttccc
     2581 aaaaccgtcc gcgtcacttc tagaagaaac cacaaatcca tgcttcaaat aaaatctcgt
     2641 ggcattttca ttttgttcat tcacatccac caaatttatc tgcttatttt ctattagcca
     2701 actaagaatt tgactcccat aaccattacc cgtagctatc ggctctaaaa acaacatatc
     2761 tagttcccgc tcgctcgtcc cactaaaacc aacaacctct tcaccagcga accataagaa
     2821 cagttccaca ttatctagaa acaaaggaat ttgttctttg taaaactgcc tatcttccgc
     2881 agctaaaaaa tcatgcgttg caataactga cttttcccaa atcgctaaaa ttgtctggta
     2941 atctagtttt tccgctcgtt tatttataag tatcatattt ttcaacttcc tatttatttt
     3001 ttaggtttgg gcacatgtgg cggtttcttt tccccgccga gcaagattgc aagtattaag
     3061 aaaatatatg gatgtgtagt aaagagcaat acactgagaa tcccaatagg gctcatgatt
     3121 aattcgtttg tttctgaaga aatccccccc acccatatat aaacaaataa tacgaacagg
     3181 gatataaagc acatcccaat caacgctttc cccgctatag taaacttata tttttcaagc
     3241 gataaagcca gtgttgtaga aaatatactg atgataacaa gtaaataaat tgtcataaac
     3301 tctggttcaa atacaactgg aaattcgttc ataaagttac gctcctttaa aattattgtg
     3361 ctggattaca ctgctgttta tacgttgttg ttctaaatac aaaaatccct tgatgttttt
     3421 tgaattatta aaggttaaaa gcataaacac aaagaaagtg aaatcaattt tacccttttg
     3481 tgtatgattg attttctttt ctcctctcgt atttgaatct cccatgtttt catagtacat
     3541 tattatttgt gaaataaaaa gagattttag ggaacttttc taattaataa gttgtgacat
     3601 ccgtta
//
LOCUS       DASEAA010000226         3574 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.227, whole genome shotgun sequence.
ACCESSION   DASEAA010000226 DASEAA010000000
VERSION     DASEAA010000226.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3574)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3574)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3574
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.227"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..665
                     /locus_tag="U0342_002781"
     CDS             <1..665
                     /locus_tag="U0342_002781"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="flavodoxin-dependent
                     (E)-4-hydroxy-3-methylbut-2-enyl-diphosphate synthase"
                     /protein_id="HEM2424109.1"
                     /translation="YPTAEGMVESALAHIKILEDLDFYDIIVSLKASDVNLAIEAYDK
                     ASRAFNYPLHLGITESGTQFAGGIKSAAGLGAILSLGIGNTLRVSLSADPVEEIKVAR
                     EVLKSFGLSSNAAMLISCPTCGRIEIDLIRIANEVENYIATIKAPIKVAVLGCAVNGP
                     GEAREADIGIAGSNGEGLLFRHGKIIRKVPEAIMVEELKKEIDILAEEYFEKKTDLES
                     LR"
     gene            701..1408
                     /locus_tag="U0342_002782"
     CDS             701..1408
                     /locus_tag="U0342_002782"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464967.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlC family ABC transporter permease"
                     /protein_id="HEM2424110.1"
                     /translation="MEKENELSFYDGVRACLPTVLGYAGIGIAAGVVGKASHLSLLEV
                     TLLAIIVYAGAAQFIISGLLLLQSPISAIIFTTFLINSRHFLMSMAEAPHFKKYSLWN
                     NIGIGALLTDETFGVSMNQIGNKKPVSAKWMHGINVTAYLAWIVACIVGAFIGNWLPN
                     PEQFGLDFALSAMFIGLLYLQVVSDKSKKISTSLFVMILVAVFLILFMRVMTPELAIL
                     TATLLGCLMGVIIERWR"
     gene            1399..1725
                     /locus_tag="U0342_002783"
     CDS             1399..1725
                     /locus_tag="U0342_002783"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464968.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AzlD domain-containing protein"
                     /protein_id="HEM2424111.1"
                     /translation="MALSSYTLFVIVGCGLVTFIPRVLPFIFVRKLQLPDVVIRYLSY
                     VPLCILTALFVQSLLITRENGFPGINIENLLASLPTILTAILTKNLMWIVIIGIISMA
                     MIRLFA"
     gene            complement(1807..2691)
                     /locus_tag="U0342_002784"
     CDS             complement(1807..2691)
                     /locus_tag="U0342_002784"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptidylprolyl isomerase"
                     /protein_id="HEM2424112.1"
                     /translation="MTKLKKVMISVIAATLLLLAGCGSSAVVKTDAGSVTQDELYEAM
                     KTTYGNEVVQQLTFKKILEDKYTVTEKEVNAEYKKYEEQYGDSFESTLSSNNLTKTSF
                     KENLEYNLLVQKATEANMNVSESKLKTYYKTWEPDITVRHILVDDEATAKEIQTKLKN
                     GEKFTDLAKEYSTDTATSTNGGLLDPFGPGEMDETFEKAAYALENKDDVSGIVKSTYG
                     YHLIQLVKKTEKGTYAKEKANVKAAYIESQLTTENMIAALKKELKAANIDIKDSDLKD
                     AFADYTSTSSTSSTTTSN"
     gene            complement(2826..3251)
                     /gene="zurR"
                     /locus_tag="U0342_002785"
     CDS             complement(2826..3251)
                     /gene="zurR"
                     /locus_tag="U0342_002785"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464970.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator ZurR"
                     /protein_id="HEM2424113.1"
                     /translation="MGLTATEALMKMKEKGYKHTDKREFLINLLARKNKYLTAKDVLE
                     NMKDDFPGISFDTIYRNLSLFVELGIFEETDLSGERNFRLACTHEHHHHHFICMKCGK
                     TKEIMMCPMDFLTEALPGYQIDGHKFEVYGECPECLQAS"
     gene            complement(3232..>3574)
                     /gene="zurM"
                     /locus_tag="U0342_002786"
     CDS             complement(3232..>3574)
                     /gene="zurM"
                     /locus_tag="U0342_002786"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464971.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="zinc ABC transporter permease ZurM"
                     /protein_id="HEM2424114.1"
                     /translation="KVFDVIFMVLVALVIASSMRIVGILLVSSLMTLPVAAAIRIAKG
                     FKQTILLSILFGEIAVIGGLFTAYYLNLAPGGAIVIISVLLLIVTILYQKIRQKILIS
                     KRGEENGTYSN"
BASE COUNT         1011 a          602 c          696 g         1265 t
ORIGIN      
        1 gttaccctac tgctgaagga atggtagaaa gtgcacttgc ccatattaaa attctcgaag
       61 atttagattt ttatgatatc attgtttctt tgaaagcttc tgatgtgaat ttagcaattg
      121 aagcttatga taaagctagt cgcgcattta attatcctct acatcttgga attacagaat
      181 ctggtacgca gtttgctgga ggaataaaaa gtgctgctgg tttaggagcg atactcagtt
      241 tgggcattgg aaatacatta cgggtatctt tgagtgctga tcctgtggaa gagataaaag
      301 tggcccggga ggttttaaaa tcgtttggcc tttcctcgaa tgccgccatg cttatctcct
      361 gccctacttg cggtcgaata gagattgatt tgattcgtat cgctaatgaa gtggaaaatt
      421 acatagcaac gattaaagct ccgattaaag tagccgtgct tggctgtgcg gtcaacggtc
      481 ccggagaagc tcgcgaagca gatatcggaa ttgctggttc aaatggagaa ggccttcttt
      541 ttagacatgg taaaatcatc cgaaaagtac cagaagccat tatggtagaa gaacttaaga
      601 aagaaattga tattttggca gaagaatatt ttgaaaagaa aacagatttg gaaagcctta
      661 gataatcgta ttggggtttt tgtttcaagg gggatttttg ttggaaaaag aaaatgagct
      721 tagtttttat gatggtgtta gagcctgcct tcctaccgtc cttggttatg ctgggattgg
      781 tatcgctgca ggagtagtag gaaaagcatc ccatttaagc cttttagaag tgacgctact
      841 tgcgattatc gtttatgcag gtgcggcgca atttattatt tctggtttgt tattactaca
      901 aagtccgata tcagcaatca tttttactac ttttttaatt aattcaaggc attttttaat
      961 gagtatggcg gaagctcctc attttaagaa gtattctttg tggaataata ttgggattgg
     1021 tgcccttctg acggatgaaa cgtttggggt ttcgatgaat cagattggta ataaaaaacc
     1081 tgttagtgct aaatggatgc acggaataaa tgtaactgcc tacttggcat ggattgtcgc
     1141 ttgtatcgtt ggggcattta ttggcaactg gctcccaaat ccagaacaat ttggtttaga
     1201 ctttgcgttg tctgcaatgt ttatcggttt gctatattta caagtagtga gtgataaaag
     1261 caaaaaaata agtacgagtt tgttcgtcat gatactagtc gctgtatttt taattctctt
     1321 tatgcgtgtg atgacgccag aactagctat tttaactgca accttactcg gatgtttgat
     1381 gggagtgatt atagagagat ggcgttaagt tcctatactt tatttgtcat tgttggatgt
     1441 ggacttgtga cgtttatacc gcgtgtcttg ccgtttatat ttgtgcgtaa attacagctt
     1501 ccagatgtag tgattcgtta tttatcgtat gtcccccttt gtatcctcac tgcgctgttc
     1561 gttcaaagtt tattaattac aagggaaaat ggttttccag gaattaatat agagaattta
     1621 cttgcatcac ttcctaccat tctaacagct attttgacta aaaatttaat gtggattgtg
     1681 attattggaa ttatttccat ggcaatgatt cgtttatttg catagaaaag ccctttactg
     1741 gagtgtgttt ttgacgggaa tcaaaaccag taaagggctt tttgtatagg tggatccgaa
     1801 gtaatattag ttagatgttg ttgtggaact tgttgaagat gtacttgtgt aatctgcaaa
     1861 tgcatctttt aaatcactat ctttaatatc aatattagca gcttttaact cttttttgag
     1921 tgcagctatc atattttctg tggttaattg agattcaata tatgcggctt ttacgtttgc
     1981 tttttcttta gcgtaagtgc ctttttctgt tttcttcact aattggatca agtgatatcc
     2041 gtaggtagat ttcacaatgc cacttacatc atctttattt tctaatgcat aggctgcttt
     2101 ttcaaatgtt tcgtccattt caccgggacc aaatggatct aaaagcccac catttgtact
     2161 agttgctgta tctgtagaat attctttagc taaatcagtg aatttttcac cattttttaa
     2221 tttcgtttga atttctttcg ctgtagcttc atcgtctact aaaatatggc gcacagtaat
     2281 atctggttcc caagttttgt agtaggtttt tagcttgctt tcacttacat tcatgtttgc
     2341 ttctgttgct ttttgaacaa gtaaattata ctctaaattt tctttgaaag aagtttttgt
     2401 taaattatta gaggataacg ttgattcaaa tgagtcaccg tattgttctt cgtatttctt
     2461 gtattctgca tttacttctt tttctgttac ggtgtattta tcttctaaga tttttttgaa
     2521 agtaagttgt tgcacgacct catttccata agtcgttttc atcgcttcgt aaagctcatc
     2581 ttgtgtgaca cttcctgcat ctgttttaac aacagcactg cttccacaac cagcgagtag
     2641 tagtaatgta gctgctatta cggaaatcat cacttttttt aattttgtca aactgttcct
     2701 ctccttcgtc tttcggctac ttcttacttt agcgataaaa agtgtccaga ataagaaaca
     2761 aatatgaaat aactgtgaac attacgcata aaataaaaaa ggcccggaat tcggaccttt
     2821 tgctattaag aggcttgtaa acattctgga cattcgccgt aaacctcgaa tttatgaccg
     2881 tcaatttggt aaccgggtaa agcttcggtt aaaaaatcca ttgggcacat cataatttct
     2941 tttgttttcc cacatttcat gcaaataaaa tgatgatggt gatgctcgtg tgtacaagct
     3001 aaacggaaat tgcgttcacc agaaagatct gtttcttcaa aaatacctaa ttctacaaat
     3061 aaagagagat tgcggtaaat agtatcaaaa cttattcccg ggaaatcatc tttcatattt
     3121 tctaagacat cttttgccgt caaatattta tttttcctcg ctagtaagtt aattagaaat
     3181 tcacgtttat ctgtgtgttt atagcctttt tccttcattt tcatgagtgc ttcagttgct
     3241 gtaagtccca ttttcctcac ctcgttttga aattaagatt ttttgacgta ttttttgata
     3301 taaaatggtg acgattaaaa gtagcacgga tataataacg atggctccac ccggcgctaa
     3361 attcaagtaa taagcggtaa acagaccacc gataacggca atttcaccaa ataaaatcga
     3421 taataaaatg gtttgtttaa atcctttagc aatacgaata gctgctgcaa caggcaatgt
     3481 cattaaagac gaaacaagta aaataccaac gattcgcata gaagacgcta ttacaagagc
     3541 gactaatacc ataaatataa catcgaatac tttg
//
LOCUS       DASEAA010000227         3573 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.228, whole genome shotgun sequence.
ACCESSION   DASEAA010000227 DASEAA010000000
VERSION     DASEAA010000227.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3573)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3573)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3573
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.228"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            177..2327
                     /gene="nrdD"
                     /locus_tag="U0342_002787"
     CDS             177..2327
                     /gene="nrdD"
                     /locus_tag="U0342_002787"
                     /EC_number="1.17.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463810.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase"
                     /protein_id="HEM2424115.1"
                     /translation="MYVEQLNEQMVIKRDGRKANFDLIKIRNAVEASMKAINLEDETF
                     LEEILLEVVSELPNKADMTIDEIQHCVENTLMKSTYPDVARAYIEYRHDRDHERENIT
                     DMHKSVEKLLQKDKTVVNENANKDATVFNTQRDLTAGAVAKSYALKYMLPKHVSNAHL
                     KGEIHFHDLDYSPYHAMTNCCLIDIEGMLSKGFTIGNANVESPKSIQTATAQIAQIIA
                     NVASSQYGGCSVDRIDEVLSVYARLNFEKHKKDAMEWVVPEKQEGYAAEKTRKDIYDA
                     MQSLEYEINTLYTSNGQTPFVTLGFGLGEDWFAREIQKAILKVRIGGVGKDKHTAIFP
                     KLVFSIRRGTNLNAEDPNYDIKQLALECSSKRMYPDVLNYDSLVRLTGDFKVPMGCRS
                     FLPAWENENGEHVNAGRNNLGVVTLNIPRIAIQSGGDKERFWEIFHERMKTVKDALLF
                     RLNRVRQARPENAPILYKYGAFGKRLQDGENVDQLFNKERSTISIGYIGLYEAATVFY
                     GGEWEGDKEAKNFTLDILKELKGYADNWKDEYGYWFSVYSTPSESLTDRFNRLDKEKY
                     GVIKDITDKDYYQNSFHYDVRKKITPFEKIDFEKDYPEFCSGGFIHYCEYPKMVHNTK
                     ALEAVWDYSYDRVAYLGTNTPIDKCYECNFEGEFVPTEEGFKCPSCGNTDPEKADVVK
                     RTCGYLGNPMKRPMVHGRHVEISNRVKHMENLGE"
     gene            2320..2871
                     /gene="nrdG"
                     /locus_tag="U0342_002788"
     CDS             2320..2871
                     /gene="nrdG"
                     /locus_tag="U0342_002788"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463811.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="anaerobic ribonucleoside-triphosphate reductase
                     activating protein"
                     /protein_id="HEM2424116.1"
                     /translation="MNNPKPCEWKSNELSRGYIADYKAFNFVDGEGVRCSLYVSGCPF
                     HCEGCYNKAAQSFKYGKPYTKELEDDILKDIGHESVQGLTLLGGEPFLNTATCLSVVK
                     RIRATYGETKDIWSWTGYTWDEMMQETADKLELLSLIDVLVDGRFEQKLFDPNLAFRG
                     SSNQRIIDVQKSLAAGEVVLYEL"
     gene            complement(3015..>3573)
                     /locus_tag="U0342_002789"
     CDS             complement(3015..>3573)
                     /locus_tag="U0342_002789"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463812.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424117.1"
                     /translation="RNNHVYLIVEGFVSISMNPQSSSIYTVLGKGSFVNYYSLFQGNV
                     DDFLFTTISPCTIYKYSFKDLEYFLSMFPENFGFQFFIMRDLARHAFFKSLFAETSSS
                     DKLELSFSNMGKLHGTLYEKDSVILPKEMRTSTIAAYSNLSKSSFYKQLTLLKDQGKI
                     WKNGREWVVRNKELYDYVKARQFVD"
BASE COUNT         1226 a          684 c          712 g          951 t
ORIGIN      
        1 gtagcaaaaa aataaaaaga agtaaaggga caaaagacct tttatgtgaa agatttttca
       61 cagcgcttaa ttctttagtc ccaattccgg aaattcctca gatatcatta caataaaact
      121 tcatcttgtg ttatattatt aaagcagaca caatatatag ttagtggggg attatcatgt
      181 acgtggaaca acttaatgaa caaatggtaa taaaaaggga cggccgtaaa gcaaactttg
      241 atttaattaa aattcgtaat gccgttgaag catctatgaa agcaattaat ttagaggacg
      301 agactttctt agaagagatt ttgcttgagg ttgtaagtga attacctaac aaggcagata
      361 tgaccatcga tgaaatccag cattgcgtcg aaaatacttt aatgaaatcg acgtatcctg
      421 atgtagcgag ggcttacata gagtaccgcc atgatcgcga ccatgagcgt gaaaacatca
      481 cagatatgca caaaagcgta gaaaagctac tacaaaaaga caaaacagta gtaaacgaaa
      541 atgccaacaa agacgcgact gtctttaata cgcaacgcga tttgacagca ggagccgtag
      601 caaaaagtta cgcattaaaa tacatgctac caaaacacgt atccaacgct catttaaaag
      661 gggaaattca ttttcacgat ttagattaca gcccatacca tgcgatgacc aactgttgtt
      721 taatcgacat cgaaggaatg ctgtcaaaag gatttacgat tggtaatgcc aacgtagaaa
      781 gcccgaaatc tatccaaact gctaccgcac aaattgctca aataatcgca aacgtagcaa
      841 gttcacagta cggcggttgt tcggttgacc gtattgatga agttttatcc gtttacgcgc
      901 gtttgaactt tgaaaaacat aaaaaagatg cgatggaatg ggtcgttcca gaaaaacaag
      961 aaggctatgc agcggagaaa acacgcaaag atatttacga tgcgatgcaa agcttagaat
     1021 acgaaatcaa cacattatat acaagtaacg gccaaacacc gttcgtaaca ctaggcttcg
     1081 gtcttggtga agattggttt gcccgtgaaa ttcaaaaagc catcctaaaa gtgcgtattg
     1141 gtggggttgg taaagataaa cacacggcta ttttcccgaa attagtattt tcgattcgcc
     1201 gtggaactaa tttaaatgca gaagatccta attatgacat taaacaattg gcgctagagt
     1261 gttcctcgaa acggatgtat ccagatgtac tcaactacga ttcactcgtt cgcttaacag
     1321 gcgatttcaa agtaccaatg ggctgtcgtt cgttcttgcc agcttgggaa aacgaaaacg
     1381 gcgaacacgt gaacgcggga agaaacaatc ttggtgttgt aacacttaac attccacgta
     1441 tcgctatcca aagtggtggg gacaaagaac gtttctggga aattttccac gaacgcatga
     1501 aaactgtcaa agatgcgcta cttttccgtt taaaccgcgt acgtcaagca cgtccagaaa
     1561 atgcaccaat tttatataaa tacggagcat ttggcaaacg actacaagat ggcgaaaatg
     1621 ttgatcaact tttcaataaa gaacgttcta ctatctctat cggctatatc ggtctttatg
     1681 aagcagcgac tgtattttac ggcggggaat gggaaggcga caaagaagca aaaaacttca
     1741 cgcttgatat cttgaaagaa ctaaaaggtt atgcggacaa ctggaaagat gaatatggct
     1801 actggtttag cgtatattcg actccaagtg aaagcttaac tgaccgtttt aaccgtttag
     1861 acaaagaaaa atatggtgta attaaagaca tcacagataa agactactac caaaactctt
     1921 tccactatga tgttcgtaaa aaaattaccc catttgaaaa aattgatttt gaaaaagatt
     1981 atccagaatt ttgctctggc ggattcattc attattgtga atatccaaaa atggttcaca
     2041 atacgaaagc acttgaggct gtatgggatt actcctatga tcgtgtagct taccttggta
     2101 caaatacacc aatcgataaa tgttacgaat gtaattttga aggtgaattt gttcctacag
     2161 aagaaggctt caaatgccca agctgtggca acaccgaccc cgaaaaagca gatgttgtaa
     2221 aacgtacttg tggctattta ggcaacccaa tgaaacgtcc aatggttcat ggacgtcacg
     2281 tagaaattag caatcgcgtg aaacatatgg agaacttagg tgaataatcc aaaaccgtgt
     2341 gaatggaagt cgaatgaatt atccagaggg tatatcgccg actataaggc attcaacttt
     2401 gtcgacggag agggcgtccg gtgcagtcta tatgtatctg gatgtccttt ccactgcgaa
     2461 ggctgttaca acaaggctgc gcaatcattt aaatacggca aaccttacac gaaagaatta
     2521 gaagacgata tcctaaaaga catcggacat gaaagcgtcc aaggcctcac tttacttggc
     2581 ggagaaccat ttctaaacac cgccacatgc ctatctgtcg tgaaacgaat ccgcgcaaca
     2641 tacggcgaaa caaaagatat ctggtcatgg accggctaca cctgggacga aatgatgcaa
     2701 gaaaccgccg acaaactaga acttctatcc ttaatagatg ttctggtaga cggccgcttc
     2761 gaacaaaaac tattcgaccc caacctagca ttccgcggtt ccagcaacca aagaattatt
     2821 gatgtgcaga aatcacttgc tgctggtgaa gtggttttgt atgagttgtg aaatatgccc
     2881 tctttgatgg agggcttatt ctttttgctt tggatgctta ttgaatatat gtgcgggcat
     2941 agaatcaaca atgtaagaat gatgatagta ctaatccaaa taaaaaacgc cacccataac
     3001 tcaggtggcg ttttttaatc aacaaattgt ctagctttca cataatcgta caattcctta
     3061 tttctaacaa cccattctct tccatttttc caaatcttac cttggtcttt taaaagggtt
     3121 aattgtttgt aaaaactgct tttcgataga ttgctataag cagcgatagt actagttcgc
     3181 atttctttcg gtaaaataac actatctttt tcataaagcg ttccgtgtaa tttgcccata
     3241 ttagaaaaag aaagctctaa tttatcagaa gaactagtct cggcgaaaag gcttttgaag
     3301 aatgcatgtc gcgccaagtc tcgcataatg aaaaattgaa aaccaaaatt ctctggaaac
     3361 atcgaaagaa agtactctaa atctttaaaa gaatatttgt aaatagtgca cggggaaatg
     3421 gttgtaaaca gaaagtcatc tacatttcct tggaacaaac tatagtaatt tacaaaagag
     3481 cctttaccta agactgtata aatactacta gattgcggat tcatagaaat agacacgaag
     3541 ccttctacaa ttaaatagac atggttattt ctt
//
LOCUS       DASEAA010000228         3379 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.229, whole genome shotgun sequence.
ACCESSION   DASEAA010000228 DASEAA010000000
VERSION     DASEAA010000228.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3379)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3379)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3379
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.229"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..708
                     /locus_tag="U0342_002790"
     CDS             <1..708
                     /locus_tag="U0342_002790"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463588.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="adenylosuccinate synthetase"
                     /protein_id="HEM2424118.1"
                     /translation="FKEYVCDTSVVLNDALDDGKRVLFEGAQGVMLDIDQGTYPFVTS
                     SNPIAGGVTIGSGVGPSKINHVVGVAKAYTTRVGDGPFPTELFDTIGDTIREVGHEYG
                     TTTGRPRRVGWFDSVVVRHARRVSGLTDLSLTLLDVLTGIETLKICVAYKLDGKTITE
                     FPASLKDLARCEPVYEELPGWTEDITGVTSLDDLPVNCRHYMERIAQLTGVQVSMFSV
                     GPDRAQTHVIKSVWRLA"
     gene            1011..1304
                     /locus_tag="U0342_002791"
     CDS             1011..1304
                     /locus_tag="U0342_002791"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463589.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="WXG100 family type VII secretion target"
                     /protein_id="HEM2424119.1"
                     /translation="MSGQIRMSPSELRDRAKTYGQSGRDIEDILSRLSQLQEQLRSEW
                     EGQAFMRFDDQFEQLKPKVTEFANLMDQINDQLEKTANAVEEHDQQLSQNFGF"
     gene            1453..>3379
                     /gene="esaA"
                     /locus_tag="U0342_002792"
     CDS             1453..>3379
                     /gene="esaA"
                     /locus_tag="U0342_002792"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463590.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type VII secretion protein EsaA"
                     /protein_id="HEM2424120.1"
                     /translation="MKKVKWSILLFLVLAIFLSAGITYLALNQSSNKESKNNSEKTHK
                     MTIALVNEDQGDNFQGKQVEFGNQFVKSIEKDDTHEWYVVSRGVAESGLKRDVYNMMI
                     VIPSDFSEKAMSMTSSAPEKVTISYKVNDVGNSDLKAEAEKTAASVLEDFNSRIIDVY
                     FASILTTLQEAQDNIGTLVKEEKKYDAIYNKDVNNPLSSYTKQFKTVQDYTGTSKESF
                     QGFQDIMKEFEESLNLSQKENEEHMKNMDAFTKTQEENAPFGAEFTENLSKFDGTLSA
                     EDIRMQTAALEQANAKMTSEFQILEDSNSLLSQTQALQSYIAETNARIDAVDAEIMGT
                     LENHFRTAVYNDLLRILRENEYSDKLNEIGLKDLTGEDINAGFNKMIVKEIQSLPTYN
                     ADQLASIGLDEEMYKNVVTLSKEYYSNHRSAFGEGFSFTTDPKTLPTDTLKSDTINRL
                     KSEGVTLESSSYTVEGSDYPTEIILTLDENFTFSDVDCLVNGSSNPELVQQTAYGENG
                     IKLSIQALGSTPAEIKITGKAKLREGVNVPLIGAVNWNATLQQYEKKEYSEMPTIPSE
                     LDPTTPDTSLIVRKEPVPIKVTAPTYLNETKSSVKAITNTVKDYYKLQALFDLYYGID
                     ASDSGQIPDFSNYQVTLE"
BASE COUNT         1165 a          538 c          719 g          957 t
ORIGIN      
        1 tttaaagaat atgtttgcga tacatctgtt gttttaaatg acgcattaga tgatggtaaa
       61 cgtgtattat ttgaaggtgc gcaaggggtt atgcttgata ttgatcaagg aacatatcca
      121 tttgtaactt caagtaaccc gattgctggt ggcgtaacta tcggtagtgg cgtaggtcct
      181 tcaaaaatca atcatgttgt tggtgtggcg aaagcttata caacacgtgt tggtgatggt
      241 cctttcccaa cagaattatt cgatactatt ggggacacta tccgtgaggt tggtcatgag
      301 tatggtacaa cgactggtcg tccgcgccgt gtaggttggt ttgacagtgt agtggttcgc
      361 catgcgcgtc gtgttagtgg cttaacagat ttatcgttaa cactactgga tgttttgaca
      421 ggaattgaaa cacttaaaat ctgcgtagct tacaaattag acggaaaaac aattacagag
      481 ttcccggcaa gtctgaaaga tctagctcgt tgcgaacctg tatatgaaga acttccaggc
      541 tggacggaag atattactgg agttacatca ctcgatgatc ttccggtgaa ctgccgccat
      601 tacatggagc gtattgcaca gctaactggt gtgcaggttt ctatgttctc tgtaggccct
      661 gatcgcgctc aaacacatgt cattaaaagc gtttggcgtt tagcttaata aaataaatat
      721 caagcccatc taaggtgtat tcttggatgg gcttttttgc tgtataaaaa taatagtgat
      781 tctggaaaag tatacaattt tttatccgaa aaattgaaaa agttaacaaa aggggaaggt
      841 gtttgtgaaa aaggcatctt tttgtatagt gatgttgttt ttaaaagacc tattatcaag
      901 tctttatagg agttttattc gtatttttgt cacattttac tttgtgaatt catgttataa
      961 tttgagagtg atatcttatt cacaatagat aataagagga gatgaagtga atgtcaggtc
     1021 aaattcgtat gagtccaagc gaactacgtg atcgcgcgaa aacttacggt caaagtggtc
     1081 gggatattga ggatattcta agtcgtttaa gtcaactaca agaacaacta cgtagcgaat
     1141 gggaaggtca agcttttatg cgttttgatg atcaatttga acaattaaaa ccaaaagtaa
     1201 ctgaattcgc aaacttaatg gatcaaatta acgatcaact tgagaagaca gcaaacgcag
     1261 tagaagagca cgatcaacaa ctttctcaaa acttcggatt ctaaaatcaa caaaaagtgg
     1321 ggcatacata caaatatcgt tggatgcttt acgaaaagcc atgcagtttt ttgcatggct
     1381 ttttctaaac atagaaagct tatgcctaaa aaggtattta tataaaaaag acacagcggg
     1441 agtgggacat gaatgaagaa agtaaaatgg agtattttac tctttttagt cttggcgatt
     1501 tttctttcgg caggaattac ttatttggct ttgaatcaaa gttcgaataa ggagtctaaa
     1561 aataatagtg aaaaaacaca caagatgact atcgcacttg taaatgagga ccaaggagac
     1621 aacttccaag gtaaacaagt agagtttggt aatcaatttg ttaaaagtat tgaaaaagat
     1681 gatacgcatg aatggtacgt tgttagccgc ggagttgcag aaagtggctt aaaacgagat
     1741 gtatacaata tgatgatcgt tatcccgagt gacttttctg aaaaagcaat gtcaatgact
     1801 tcgagcgccc cggaaaaagt gacaattagc tacaaagtta acgatgtagg aaatagcgat
     1861 ttaaaagcgg aagccgaaaa aacagcagct tctgtattgg aagatttcaa ttcacggatt
     1921 attgatgttt attttgcaag cattttaaca actttacaag aagcgcagga taatattgga
     1981 accctagtta aagaagagaa aaagtatgac gctatctaca acaaagatgt aaataatccg
     2041 ttatccagct acacaaaaca gtttaaaacg gtgcaagact acacaggaac ttctaaagaa
     2101 agcttccaag gtttccaaga tattatgaaa gaatttgagg aaagcctaaa tctctctcaa
     2161 aaagaaaacg aagaacatat gaaaaacatg gatgctttta caaaaacaca agaggaaaat
     2221 gctccttttg gggcagaatt cacagaaaat ttgtcaaaat ttgatggcac tttatcagca
     2281 gaagatattc gaatgcaaac ggccgcttta gaacaagcca atgcgaaaat gacttcagaa
     2341 tttcaaattt tagaagatag taattcattg ttatcacaaa cacaggcctt acagagctat
     2401 atagctgaaa ccaatgcacg gattgatgcg gtggatgccg agattatggg aacgctcgaa
     2461 aatcattttc ggacggctgt ttataatgac ttgttgcgta ttttacgaga aaacgagtac
     2521 tcggataagt tgaatgaaat tggccttaaa gatttgaccg gagaagatat taatgctggc
     2581 tttaacaaaa tgattgttaa ggaaatacaa tcattaccaa catataatgc ggatcaatta
     2641 gcgtcgattg ggcttgatga agagatgtac aaaaatgttg taacgctctc taaggaatat
     2701 tatagtaacc atcgcagtgc ttttggcgaa ggttttagct ttacgactga tcccaaaact
     2761 ctaccaactg acacactgaa aagcgatacg attaatcgat tgaaatccga aggggtcacg
     2821 ctagaaagca gttcctatac ggtggaaggt agcgattatc caacagaaat aattctaact
     2881 ttagatgaaa atttcacttt ttcagatgtt gattgtttgg ttaatggaag cagtaatcca
     2941 gagttagttc aacaaaccgc atacggagaa aatggcataa agcttagtat acaggcgctt
     3001 ggaagtacac cggcagagat taaaatcacc ggaaaagcga agttgcgaga aggtgtgaat
     3061 gttccattaa ttggtgctgt aaattggaat gctacactgc agcaatatga gaaaaaagaa
     3121 tatagtgaaa tgccaacaat tccatcagag cttgatccta ctaccccgga tacttcatta
     3181 atagttagaa aagaacctgt accgattaag gtcactgcac caacatattt gaatgagacg
     3241 aagagttctg taaaagcaat tactaataca gtaaaagatt actataaact acaagcatta
     3301 tttgatttat attacggaat tgatgcgagt gattctggac aaataccgga ttttagtaat
     3361 tatcaagtga cattagaaa
//
LOCUS       DASEAA010000229         3362 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.230, whole genome shotgun sequence.
ACCESSION   DASEAA010000229 DASEAA010000000
VERSION     DASEAA010000229.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3362)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3362)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3362
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.230"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            72..2018
                     /locus_tag="U0342_002793"
     CDS             72..2018
                     /locus_tag="U0342_002793"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding protein"
                     /protein_id="HEM2424121.1"
                     /translation="MKNFILKKSRKTKPEKTVNINKEFLSIIAPEGGVTFKEDRYVKT
                     GNGYEACIHIIDTPVNVGQYWLADIINRDDTVVVLDVVSENRAVTLKKLKKAMSEQQS
                     RTFEERTIQEKYSAQYELEVLEDLNRQIAEQGEIIKEIHIRIYVAASDTETLDKKVGI
                     IKEDLDGRSFRSSVFLFEEKDEWLSKIISIDEQKKLASKRPGKGVPASTLGAGYFLDH
                     TFLNDTTGFPLATTATGGSFIWDIFTVNGKRTFFNAIVLGNMGMGKSTLLKLIEEDAY
                     AKNYFIRGYDKVRDYEFLVKQQGGKYLTLDGTDGKLNPLDIYATATKGEEASEIDIRG
                     SFQQHISKVCTLFQFMSRDATDSDLKVFEQLLISFYIHKKLWGKNISDEELERIGVVN
                     LAPERYPTMSEFLHYAEQVFKVKSQEGISTNMQMMYEKVILTLRNMVESYGDVFDGIT
                     TMRDFSDEQVVFFDIRGLSNMKQQVFHAQLYMSLTLIWNHAVQHGMKVKRMIEAGEIS
                     FAEAIKTLILIDECHNLINESNIFAVETITNFQREMRKFLAGILFATQSPNEMLPDGM
                     DSSTQSKLRTVFNLTQYKFLMGMDSSVIPKLKSVMEETFTQNEYEIITALDKGQALYY
                     DREHKMLLDIEASDEQLARYKGGA"
     gene            2019..3095
                     /locus_tag="U0342_002794"
     CDS             2019..3095
                     /locus_tag="U0342_002794"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="M23 family metallopeptidase"
                     /protein_id="HEM2424122.1"
                     /translation="MASEGHDSGNKTSWGLLFLRIFSVKVIIIIFIVFILISLIGLLL
                     AGRSAQQETSNIGNGCSITGKLDENLFNATLENAGVFKGKGDKFISIAKKQNIDPVLF
                     AAIAMSETGWGKSDAVVHKNNPGGLMDAATGMATVKTFATLDEGLEAMGVTLHNRIIN
                     DGLNTIEKLGAIYAPIGASNDPTGLNQNWVFTVTSIAQKFGGLTMNCSNTGSSGGTGK
                     YIIPVKNPVVSSGFSIRINPVTGVQESHKGLDFAQPAGSEILAADDGVVVFSGLGVSG
                     SGYGGYGNVVHLEHGKNKEWTLYGHMIRTNVSVGQHVKQGDVIGYVGSTGQSTGNHLH
                     FEIRKEKMGSQVDPAPILGLISTN"
     gene            3114..>3362
                     /locus_tag="U0342_002795"
     CDS             3114..>3362
                     /locus_tag="U0342_002795"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424123.1"
                     /translation="MKKTLIVLLSVLIATISISFSVTLWQERTKINEKMKEYKSDNLN
                     KQKTIEQYRIKELKNSQKQNNQTEESFDDELTEVLINNK"
BASE COUNT         1233 a          442 c          677 g         1010 t
ORIGIN      
        1 cgtaataaga tacaacaaat tcataaaaaa ctttttaatt taaatctgat actaggaaat
       61 aaggtgagtg aatgaaaaat tttattttga aaaaaagccg gaaaacaaaa cctgaaaaaa
      121 cagttaatat caacaaagag tttttatcta taatagcgcc tgagggagga gtcactttta
      181 aagaagatcg gtatgtaaaa actggaaatg gatatgaggc ttgtattcat attatagaca
      241 cccctgttaa tgtaggacaa tactggttag ctgatattat caatcgagat gatacagttg
      301 ttgtattgga tgttgttagt gaaaatcgag ctgtcacttt aaaaaaatta aaaaaagcaa
      361 tgtctgaaca acaatctcgt acttttgaag agagaactat tcaagaaaaa tatagcgcgc
      421 aatatgaatt ggaagtttta gaagacctta atcgtcaaat tgcagagcaa ggggaaatta
      481 ttaaagaaat acacattcga atatatgtag cagcttctga tacggaaaca cttgataaaa
      541 aagtagggat aattaaagaa gatttagatg gacgatcatt ccggtcgtcc gtctttttat
      601 ttgaagaaaa agacgaatgg ttatctaaaa taatttcgat agatgagcaa aagaaactcg
      661 caagcaaacg tcctggtaaa ggtgtgccag catcaacatt aggggcaggt tatttcttag
      721 atcatacgtt tttaaacgat actacaggct ttcctctcgc tacaacagca accggaggat
      781 cttttatttg ggatattttt acagttaatg gcaagagaac tttttttaac gctatcgtct
      841 tagggaacat gggtatgggt aaatccactt tattaaaatt aattgaagaa gatgcatatg
      901 caaaaaatta ttttattaga ggatacgata aagtgcgaga ttatgaattt ttagtaaagc
      961 aacaaggtgg gaaatactta acgcttgatg gtactgatgg taaattaaat cctttagaca
     1021 tttatgcaac agcaaccaaa ggagaagaag caagtgaaat tgatattcgt ggaagctttc
     1081 aacaacatat atcaaaagta tgtacacttt ttcaatttat gtctcgggat gcaaccgatt
     1141 ctgatttgaa ggtattcgaa caacttttga tttcgtttta tattcataaa aaactttggg
     1201 gaaaaaatat ttctgatgaa gaattagaga gaattggagt cgtaaattta gcacctgaaa
     1261 gatacccaac catgagtgaa ttcttacatt atgcagagca agtatttaag gtgaaatctc
     1321 aagaagggat ttcaaccaat atgcagatga tgtatgaaaa agtaatttta actttaagaa
     1381 acatggtaga gagttatggt gatgtttttg acggtattac aaccatgcga gatttttcag
     1441 atgaacaagt tgtatttttt gatataagag gactttctaa catgaaacag caagtatttc
     1501 atgctcaatt gtatatgtcg ctgacgttaa tttggaatca tgccgtgcaa catggaatga
     1561 aagtgaaacg gatgattgaa gcaggagaaa taagttttgc tgaagcgatt aagacattaa
     1621 ttcttattga tgagtgtcac aatttaatta atgaaagtaa catttttgct gtagaaacaa
     1681 ttacaaattt ccaacgtgaa atgagaaaat ttttagctgg aattcttttt gcgacacaat
     1741 caccaaatga aatgttacca gatggaatgg actcgagtac tcaaagtaag ctaagaactg
     1801 tatttaactt aacgcagtat aaatttttaa tgggaatgga tagttctgtt attccaaaac
     1861 taaaaagtgt catggaagaa acttttactc aaaatgaata cgaaattata acagctttag
     1921 ataaaggaca agcactatat tatgatcgtg aacataaaat gttgcttgac attgaagctt
     1981 ctgatgaaca attagcaaga tataaaggtg gtgcgtaaat ggcaagtgaa ggacatgatt
     2041 ccggcaataa aacttcctgg ggcttgcttt ttttgcgtat atttagtgtt aaagtgatta
     2101 ttattatttt tattgtattc attttaataa gcttgattgg acttttactt gcaggaaggt
     2161 cagctcaaca agaaacttca aatattggta atggttgctc gataacaggc aagttggatg
     2221 aaaatctttt caacgccaca ttagaaaatg caggagtatt taaaggaaaa ggagataaat
     2281 ttatttcaat tgcaaagaaa caaaatattg atccagttct ttttgcagct atagctatga
     2341 gtgaaactgg atggggtaaa agtgatgctg tagtgcataa aaataatcca ggaggtctaa
     2401 tggatgcagc cacaggaatg gctactgtta aaacgtttgc tactttagac gaaggattag
     2461 aggcaatggg tgttaccctt cataatagaa ttattaatga tggactcaat acaattgaaa
     2521 aattaggggc aatatacgcc cctattggag caagtaatga ccctacagga ttaaaccaaa
     2581 actgggtatt tactgttaca tctattgcac aaaaatttgg agggcttact atgaattgtt
     2641 ctaacactgg ttcgagtggg gggactggaa aatatataat ccctgttaaa aatccagttg
     2701 taagttctgg attttctatt cgtattaatc ctgtgacggg agttcaagag agtcataaag
     2761 gattagattt tgcacaacca gctggatcag aaatacttgc agctgatgat ggggttgtcg
     2821 tattttctgg tctgggtgtt tcaggaagtg gctacggtgg ttatggtaac gttgttcatc
     2881 tagaacatgg taaaaataaa gaatggactc tctatggtca tatgattcgt acaaatgtta
     2941 gtgtaggtca gcatgtaaaa caaggtgatg taattggtta tgttggaagt actggacaga
     3001 gtacagggaa ccatctgcat tttgaaattc gaaaggaaaa aatgggtagt caagttgatc
     3061 cagcaccaat tctaggtctt atctcaacaa attaaaagaa gaggggttct actatgaaga
     3121 aaactttaat agtattatta agtgttttaa tagccacaat atctatctcg ttttctgtta
     3181 ctttatggca agaaaggaca aaaataaatg agaaaatgaa agaatataaa agtgataatt
     3241 taaataaaca aaaaactata gagcagtatc gaataaaaga attaaagaat tctcaaaaac
     3301 aaaataacca aactgaagaa tcttttgatg atgaattaac agaagtactg attaataaca
     3361 aa
//
LOCUS       DASEAA010000230         3358 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.231, whole genome shotgun sequence.
ACCESSION   DASEAA010000230 DASEAA010000000
VERSION     DASEAA010000230.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3358)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3358)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3358
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.231"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            238..474
                     /locus_tag="U0342_002796"
     CDS             238..474
                     /locus_tag="U0342_002796"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424124.1"
                     /translation="MINSTEQAKFMKQMAEALMVQVGVDPKKWREDILLQGYQNFVLQ
                     NSKHVIQVIETHDQRTSSQKSFKPDQPKQEHKSQ"
     gene            492..776
                     /locus_tag="U0342_002797"
     CDS             492..776
                     /locus_tag="U0342_002797"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424125.1"
                     /translation="MSVWKNVILDYYSRLLAMDWFSNAINAINNLTSKFQPLLIVAAI
                     LCLLMAGALFMMGDDMKRSAKGWILGILIGVFIISSCTALINTYAATIKF"
     gene            827..2971
                     /locus_tag="U0342_002798"
     CDS             827..2971
                     /locus_tag="U0342_002798"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424126.1"
                     /translation="MALIGKKSYVSYLQPVHLSTEEPFEELQNMRLQEAILYAECMLE
                     QLNFGEIVEMEWKLQTKKGEIFTFRFNIGQLEESLPLLEIIEEGVRNSLNEDEANRVL
                     NILPLRYEAKEKEYENPRQWVLENEENFYFMRSEQAYINHMEENQPTIEILPDISIEE
                     PREEIVEENEEIEPDVYYEVDTDEDFNLSLEDIHTSDEQPFNKDVVKVNTDGLYKRFS
                     GLDEKLNHIFSTYLSNEEVSNIFEKHKKKAEKNEVQKSINIIKKKMMEKEIQLEHNFI
                     EEKEILQAAEEEKQKLEERNKEDELKKLDEVYTEKIKSKKEEVTNEKTLEKEQALEIE
                     KQKYQQAALEIEKKYTNTLHDLTAKALEKLEKELQEKKNQVISNHSYQMTQKSKEANQ
                     SISIVMQQKNNSNHTELQKYLYSLAEEEKERIDKMIQELHPVLDESAKHELEEIKLRY
                     ESESDEKYVSMERELRMKQMEQEKELEERKQLANERQTVEQMKHEIQRSKEEYNNAIQ
                     LVEQMSKWMVPGDRKNVSEIKEKNSSILKTVILSITAILCATVLGLGILFGLKNMPEN
                     KDTAVAKEQISTQVQPEKVTYSEENPSLDALLNQKEFIKAAQLYPDSRNQIESTIFEL
                     KDVSALKRFNEVFKTSYGALDEAILSRDLHKQIQFYEENPTISYTSEQLETIGNAYVQ
                     TNKLQEATEIQNKLKSATLAKTIKEKSMSEES"
     gene            3014..>3358
                     /locus_tag="U0342_002799"
     CDS             3014..>3358
                     /locus_tag="U0342_002799"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424127.1"
                     /translation="MTLYDSLEQLEKYEAIKRIRRGLHRTEKFKNCIKFYEGLTIKEK
                     KYFNSQIDYKGISTLQKSSLESFYHEGYKEEVIQERNLAKENLSIEQVNRIDQHIENE
                     IEFTEHEHGDISY"
BASE COUNT         1423 a          434 c          609 g          892 t
ORIGIN      
        1 aagaagttaa taagaaccaa acaaccgttt tggaaaatac agatattaga aaacttactt
       61 taataacttg ttctactgaa agaactactt ctaaaagaat catagtaaca gcaaacccta
      121 tctagttaag atagggtttt ttgttacgga taaaaaggct attaattatt tttaatagtc
      181 tttttatccg tatgaaaatg atctatacgg aaatttaaaa gagaggagct aaaatatatg
      241 ataaattcta cagaacaagc taaatttatg aaacaaatgg cagaagcact catggtacaa
      301 gttggagtag atccaaaaaa atggcgtgaa gatatccttc ttcaaggata tcaaaatttt
      361 gtgttacaaa actccaagca cgtaatccaa gttatcgaaa cgcatgatca aagaacaagt
      421 tcacagaaaa gtttcaagcc agatcaacct aagcaagaac acaaatcaca ataaaaaggg
      481 agtttttatt tatgtcagtt tggaaaaatg taattttaga ctattattca cgattattag
      541 caatggattg gtttagcaat gcgattaacg ctattaacaa cttaacatct aagtttcagc
      601 cactattaat tgtagcagct attctttgtt tgttgatggc aggagcttta tttatgatgg
      661 gtgatgatat gaagcgttca gccaagggct ggattcttgg tattttaatt ggtgtgttta
      721 ttatttcaag ttgtacagca ctaattaata cgtatgcagc aacaattaaa ttttaagaag
      781 agagatttat ttctcttctt tttttatatt aaaaaggagg atagctatgg cacttatagg
      841 aaagaaaagt tatgtgagtt atttgcaacc tgtacattta tcaacagaag aaccatttga
      901 ggaactgcaa aatatgcgtc ttcaggaagc tatactatat gcagaatgca tgctagagca
      961 attaaatttt ggtgagatag ttgaaatgga atggaagctt caaactaaaa aaggagaaat
     1021 ctttaccttt aggtttaata ttggacagct cgaagaaagc ttacctctcc tagaaattat
     1081 tgaagaaggt gtaagaaact cacttaatga agatgaagcg aatagagtac ttaatatttt
     1141 acctctacga tatgaagcta aagaaaaaga atatgagaat cctaggcagt gggtactaga
     1201 gaatgaagaa aatttttatt ttatgagatc agaacaggcc tatattaatc acatggaaga
     1261 aaatcaacca accattgaaa tactacctga tatttctata gaagaaccaa gagaagaaat
     1321 tgtcgaagaa aatgaagaaa tagagccaga tgtttattat gaggttgata ctgatgaaga
     1381 ttttaattta tctttggaag atattcacac tagtgatgaa cagcctttta acaaagacgt
     1441 tgttaaggtt aatacagatg gattatataa acgattctct ggcttagatg aaaagctcaa
     1501 tcatattttt tctacgtatc tttctaacga agaagtaagt aatatttttg aaaaacataa
     1561 aaagaaggca gaaaaaaatg aagtacagaa aagtattaac atcattaaga aaaaaatgat
     1621 ggaaaaagaa atccagttag aacataattt tatcgaagaa aaagagatac ttcaggcagc
     1681 agaagaagaa aaacaaaaac ttgaagaacg aaataaagaa gatgaactaa aaaaactgga
     1741 tgaagtatat acagaaaaaa taaagtcgaa aaaagaagaa gtaacaaacg aaaaaacact
     1801 ggaaaaagaa caggcattag aaatagaaaa gcaaaaatat cagcaagctg ctttagaaat
     1861 agaaaaaaag tataccaaca cattgcatga tttaactgca aaagccttag aaaaattaga
     1921 aaaagaactc caagaaaaga aaaatcaagt gatcagtaat cattcttatc agatgactca
     1981 aaaaagtaag gaagctaatc agagcatttc tatagttatg caacaaaaaa ataatagtaa
     2041 tcatacggaa ttacagaaat acttatatag tttagcagaa gaggaaaaag aacgaattga
     2101 caaaatgatc caggaactcc atccagttct tgacgaatca gccaaacatg aattagaaga
     2161 gattaaacta cgatatgagt cggaaagtga tgaaaaatac gtaagtatgg agcgtgagct
     2221 acgtatgaaa cagatggaac aagaaaaaga acttgaggaa agaaaacaat tagcaaatga
     2281 aagacaaact gtagagcaaa tgaaacatga aattcaacgt tcgaaagaag aatataataa
     2341 tgcaattcag ttagtagaac aaatgtcaaa atggatggtt cctggagata gaaaaaatgt
     2401 ttcagaaata aaagagaaaa atagttctat tcttaaaaca gtcattctta gtatcacagc
     2461 tattctttgt gccactgttc taggtctagg cattttattc ggattaaaaa atatgcctga
     2521 aaacaaagat acagcagtgg caaaagaaca aatatctacg caagttcagc cggaaaaagt
     2581 aacatatagt gaagaaaatc cgagcttgga tgctttgctg aatcaaaaag agttcataaa
     2641 agcagctcaa ttatatcccg atagtagaaa ccaaattgaa tcaactattt ttgaacttaa
     2701 agatgtgagc gcgctgaagc gatttaatga agtgtttaag acttcatatg gtgcccttga
     2761 tgaagctata ctgagtcgag atttgcataa acaaattcaa ttttatgaag agaatcctac
     2821 catttcctac acaagtgaac aattggaaac gataggaaat gcctatgtcc aaactaataa
     2881 attacaagag gcaacagaaa tccaaaataa attaaagagt gcaacattgg caaaaactat
     2941 caaagaaaaa agtatgtcag aggaatctta aattgtataa gaaaaaccag taaataagga
     3001 ggagagaacg tatatgacat tatatgatag tttagaacaa cttgaaaaat atgaagcaat
     3061 aaagagaata agaagaggac ttcaccgaac agaaaaattt aagaactgta taaaatttta
     3121 tgaaggttta actatcaagg aaaagaaata ttttaatagt caaatcgatt ataaaggaat
     3181 aagcacgcta caaaagtcaa gtttagaatc attttatcat gagggttata aagaagaggt
     3241 tatacaggag agaaaccttg ctaaggagaa tttatcaata gaacaagtga atagaattga
     3301 tcaacatatt gaaaatgaga ttgaatttac tgagcatgaa catggagata tttcttat
//
LOCUS       DASEAA010000231         3353 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.232, whole genome shotgun sequence.
ACCESSION   DASEAA010000231 DASEAA010000000
VERSION     DASEAA010000231.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3353)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3353)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3353
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.232"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            439..690
                     /locus_tag="U0342_002800"
     CDS             439..690
                     /locus_tag="U0342_002800"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929521.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424128.1"
                     /translation="MKTIANEYQEYITERIRLGDNGIKLTAYSFENGYQARVIENLDS
                     NFVSLVLVKSHDGKNSIKDILLELTNEQLIEKLEEIKNL"
     gene            709..999
                     /locus_tag="U0342_002801"
     CDS             709..999
                     /locus_tag="U0342_002801"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727759.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424129.1"
                     /translation="MFFLGKYYWHVSRLGGKPTEIRHYKHITKMYKFILRNPAMFKDK
                     TLTIYDHAKPVTNMTFNEIKYRASLNLCETVERKYVLGLKQRLTEEQKEARK"
     gene            996..1808
                     /locus_tag="U0342_002802"
     CDS             996..1808
                     /locus_tag="U0342_002802"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465840.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM2424130.1"
                     /translation="MKRILNYPGSKWSLADLIIDNMPEHKSYLEPFCGSCAVFMNKQK
                     ATLETINDLDSRLVNLFKAMRDNPEKLQYLIMHTLYSREEYMLSHEISSDSLEDARRM
                     AVRLWFAVGGKTNANVGFRKNVSWNGPYNAYEWNDMYNRIGIAAARLKDAQIENVDAI
                     KLIEQHNDKDTLIYCDPPYIPTSLVSPHYQHDFSLEQHKELLKVLKNHEGKVMLSGYE
                     SELYKQELSDWPALKTMTKVGITSEKKSDRQEIIWCNFEPPMQLNLFKEEQA"
     gene            1805..2410
                     /locus_tag="U0342_002803"
     CDS             1805..2410
                     /locus_tag="U0342_002803"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743915.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1642 domain-containing protein"
                     /protein_id="HEM2424131.1"
                     /translation="MKFRKGDKVEFIWSGKLKQGVVTEIEETKNAISYQIKYSGDMGM
                     TWLDERDLIAPAQVLKVPQFVADWIEQRDAKGDDLYTAMDKSWQSMNYKVIDWLEEGE
                     DRYNKFARAWLDGYEVEKEPLYYVRLPLSTWNDDAAELEVINMYVLLNIQSDETTFTG
                     SIINKNKKWKTKLTEAEIKGMPGGDIYWQFAVPVEEVEGEA"
     gene            2407..2583
                     /locus_tag="U0342_002804"
     CDS             2407..2583
                     /locus_tag="U0342_002804"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987084.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424132.1"
                     /translation="MTVAELIEALNRHDKHLPVFIGTSLLCEVEKDSLCNEVIDVPVL
                     FLKTAIEVQWHESD"
     gene            2570..2938
                     /locus_tag="U0342_002805"
     CDS             2570..2938
                     /locus_tag="U0342_002805"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424133.1"
                     /translation="MRAIKFKGKRKDNGKWAHGYFVIDDCDCAYIINVENDGYSAIPI
                     IKTCYEVDAETVVCAGEQESKQLVRLLETARKLEIKKNEDNVHPGRISKEKEAWIEGL
                     EFATNIAIDFFKVRKEWAEK"
     gene            2935..3345
                     /locus_tag="U0342_002806"
     CDS             2935..3345
                     /locus_tag="U0342_002806"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917619.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424134.1"
                     /translation="MREIEFRGKAIHPNSLEQIVGSWAYGGIFENKIISRNLDMDSHY
                     HGFISEIEIDLKTIGQYTGLKDKNGKKIFEGDIVDISVYDRLDWSSIKGKVVFLNGAW
                     LVEDVGHFAITLQSETNEIEIIGNVHENLGLWEA"
BASE COUNT         1241 a          458 c          762 g          892 t
ORIGIN      
        1 gactagtcag tgtagatgaa aacggaaatg aatatattga aaaatcagac agaaatacat
       61 taatttgttt agctttgaca gtgttaattg cattcgttgc aggaatcggc ggattgatat
      121 taaatggctg aattaataat gattgttgca ttaatactac tattaatgct gcttgcaagg
      181 agtgatagag aatgaatgta gaaaatccga tgatagttga tgattactgg gatgatggat
      241 ttcgacactg aggagcgttg atagatgaat gtagaaaata caatcgattt atgcagatta
      301 aaagaaatgt tgttatatca aaaagaaaaa acgcaaagaa attgattttc agattgagat
      361 tttagagcga ttgataaatg agacatcaaa gaaagataac aaagaaactc aaatatggct
      421 gagcaaggag ttaaacacat gaaaacaatc gcaaatgagt atcaagaata catcacagaa
      481 agaataagac taggtgacaa cggtataaag ctaactgctt atagttttga aaatggctat
      541 caagcgagag tgatagaaaa ccttgactct aattttgtat cactcgtact tgtaaagtct
      601 catgacggaa aaaactctat aaaagatatt ttgcttgaat taacgaacga acaactgatt
      661 gaaaagctag aagagataaa gaatttataa attaagaagt tagaaaggat gtttttcttg
      721 gggaaatatt attggcatgt gtcaaggctt ggtgggaaac cgacagaaat tcgacactat
      781 aagcacatta caaaaatgta taaatttatt ttgcgaaatc ctgctatgtt caaagacaaa
      841 actttaacga tttatgatca cgcaaaacca gttacaaaca tgacgtttaa cgaaattaag
      901 tatagagcta gtttgaattt atgtgaaacg gtagaacgaa agtatgtgtt aggacttaag
      961 caaaggctta cggaggaaca gaaggaggct agaaagtgaa acgaatactt aattatccgg
     1021 gcagtaaatg gagtttggca gatttaatca ttgataatat gccggagcat aaaagttatt
     1081 tagaaccatt ctgcggatca tgcgcagtct ttatgaacaa gcaaaaagct actttagaga
     1141 cgataaacga tttagacagt cgactagtta atctttttaa agcaatgcgt gataatccag
     1201 aaaaactgca gtatttaatt atgcacacgc tgtattctcg tgaagagtat atgctttcgc
     1261 atgaaatatc aagtgattca ttagaagacg ctagacgcat ggctgtgagg ctctggtttg
     1321 ctgttggtgg taagaccaat gcaaatgttg gatttagaaa aaacgtgtct tggaatggtc
     1381 cttacaacgc atatgaatgg aatgacatgt ataaccgaat tggaatagct gcagcaagac
     1441 tgaaagacgc tcaaatcgaa aatgtagatg caattaaact gattgaacag cataacgata
     1501 aagatacact gatatattgt gacccgccat atattccgac atcgctagta agtccacatt
     1561 atcagcacga ttttagttta gaacaacata aagagttact caaagtgctt aaaaatcatg
     1621 agggcaaagt aatgttaagc ggctatgaat cagaactata taaacaagag ttatcagact
     1681 ggccagctct taaaacaatg acaaaagtag gcattacatc agaaaagaaa tcagataggc
     1741 aagaaattat ttggtgcaat tttgagccac ctatgcaatt aaatcttttt aaggaggaac
     1801 aagcatgaaa tttagaaaag gcgataaagt agagtttatt tggtcaggta aattgaaaca
     1861 aggtgttgta actgaaatag aagaaactaa aaatgctata tcctaccaaa ttaaatatag
     1921 tggagacatg ggcatgactt ggctggatga aagggatttg attgcgccag ctcaagtttt
     1981 aaaagtcccg caatttgttg ctgattggat tgagcagaga gatgcaaagg gtgacgattt
     2041 atacaccgca atggacaaaa gctggcagag catgaactat aaagtaatcg actggctaga
     2101 agagggagaa gacagataca acaaattcgc acgcgcttgg ctagacggct acgaagtcga
     2161 gaaggaaccg ctttattatg taagattgcc gctttcaaca tggaacgatg acgcagccga
     2221 attagaagtg attaatatgt atgttttgtt aaatatacaa tctgatgaaa caacttttac
     2281 tggatcaatt atcaataaaa ataagaaatg gaaaaccaaa ttaacagaag cggaaattaa
     2341 aggcatgccc ggaggagaca tatattggca gtttgctgtt cctgttgagg aagtggaggg
     2401 tgaagcatga cagtagcaga attaatcgaa gcactgaata gacacgacaa acacttgcct
     2461 gttttcatag gaacttcact tttatgtgag gttgaaaagg attcgttatg taatgaggtc
     2521 attgacgtgc ccgtgttgtt tttaaaaact gcaatagagg tgcaatggca tgagagcgat
     2581 taaattcaaa ggaaagcgca aagacaacgg caaatgggcg cacggatact ttgtcataga
     2641 tgactgtgat tgtgcatata ttataaacgt tgagaacgac ggatatagcg ctattccgat
     2701 aatcaagacg tgttatgagg ttgatgctga aactgtcgtg tgcgcaggag aacaagaaag
     2761 caaacaacta gtaagacttt tagaaacagc tagaaagtta gagattaaga aaaacgaaga
     2821 taatgtacat cctggtcgga tatcgaaaga aaaagaggcg tggattgaag gcctagaatt
     2881 tgcgacaaat attgcaattg actttttcaa ggtgcgaaag gagtgggcag agaaatgaga
     2941 gagattgagt ttagagggaa agcgattcat ccaaacagtc ttgaacaaat tgtaggcagt
     3001 tgggcatatg gagggatatt tgaaaataaa attatttcta gaaatttaga tatggatagc
     3061 cattatcatg ggtttatttc ggaaattgaa attgacttaa aaaccatcgg tcaatacaca
     3121 ggtttaaagg acaaaaacgg caagaagatt tttgaagggg atatagtcga tattagtgtt
     3181 tatgatcgtc ttgattggag ctcaataaaa ggcaaggttg tatttttgaa tggcgcgtgg
     3241 ctagttgagg atgtagggca ttttgcgata actctgcaat ctgaaacaaa tgaaatcgaa
     3301 attatcggta atgtgcacga aaatttagga ttgtgggagg catagtaaat gac
//
LOCUS       DASEAA010000232         3337 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.233, whole genome shotgun sequence.
ACCESSION   DASEAA010000232 DASEAA010000000
VERSION     DASEAA010000232.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3337)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3337)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3337
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.233"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            72..1172
                     /gene="ugpC"
                     /locus_tag="U0342_002807"
     CDS             72..1172
                     /gene="ugpC"
                     /locus_tag="U0342_002807"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463809.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sn-glycerol-3-phosphate ABC transporter
                     ATP-binding protein UgpC"
                     /protein_id="HEM2424135.1"
                     /translation="MAQLSLEHIYKIYDNKVTAVSDFNLEIDDKEFIVFVGPSGCGKS
                     TTLRMIAGLEEISKGELSIDGKVMNNVAPKDRDIAMVFQNYALYPHMTVYDNMAFGLK
                     LRKMPKDEIKKRVEHAANILGLTEYLKRKPSALSGGQRQRVALGRAIVRDAKVFLMDE
                     PLSNLDAKLRVQMRAEITKLHQQLDTTMIYVTHDQTEAMTMATRIVIMKDGVIQQVGS
                     PKQVYDHPVNMFVAGFIGSPAMNFFKGRLEGSNFIGDDFTIEVPEGKLKLLKDRGFDG
                     KDIVFGIRPEDIHDEPIVIEANPGYTFKATTIVAELTGAEFMLHSRVGTHEFVARVDA
                     RSEHQPNEVLTLAFEMSKSHFFDPETEDNLTD"
     gene            complement(1210..2181)
                     /locus_tag="U0342_002808"
     CDS             complement(1210..2181)
                     /locus_tag="U0342_002808"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463808.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Gfo/Idh/MocA family oxidoreductase"
                     /protein_id="HEM2424136.1"
                     /translation="MGNLNWAILGPGSIAHEFAEGMRGMNREIYAVGARSLEKGQAFA
                     SQYGIENVYDDFDKMLADPAIDVVYIATPHSNHYEFIMKSLHNGKHVLAEKAITVSSE
                     ELNEINVLAKEKGLIVKEAMTIFHMPLYKKLREIVESGAIGKLKIIQVAFGSAKEKDP
                     KNRFYNMDLAGGALLDIGTYALSFARYFLSETPDEVLTTMKKFETGVDEQSGILLKNK
                     EEELAVVSLSFRAKMPKRGVIACEEGFITVDEYPRASRATVTHTATGKVEEIEVGETS
                     KALEYEIIAMEESIATGENTTYQLTNDVITIMSDVRTQWGIKFPFEK"
     gene            2297..3118
                     /locus_tag="U0342_002809"
     CDS             2297..3118
                     /locus_tag="U0342_002809"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463807.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cof-type HAD-IIB family hydrolase"
                     /protein_id="HEM2424137.1"
                     /translation="MTKKYLICSDIDGTLLRQDQTVSIKTRDLIQTLEKDGHIFSIST
                     GRMYRSAREVGFQVSNSGHVIASNGSYAAIRDEQLLKTTLEEKAIRSTYDIMSDFDLP
                     LFFFSTNTLFYTKEPPAFFQNLADKSRLDTGHNSFSLVSINEKGVFDENMHQFLNAIV
                     VAEDDASKLTEVRAALNEANGIRVLSSHHNNLEILPANSDKKTAVEALGKHYNIPRER
                     IITFGDGENDIGMLQYAGTGVAMANASDNVKAAADHLTDTNEADGVYKFLKEFIS"
     gene            3135..>3337
                     /locus_tag="U0342_002810"
     CDS             3135..>3337
                     /locus_tag="U0342_002810"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463806.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2424138.1"
                     /translation="MKKGILNVLLVFALIAGLSVPSSMQVEAAAPTIKVHFIDVGQGD
                     AIYIKAPSGEDILIDAGNKGKGKT"
BASE COUNT         1036 a          665 c          598 g         1038 t
ORIGIN      
        1 tgccatagtt tttgtaaagc gttttcatat acaatgaaca caagttaaaa aatagaaaga
       61 ggcgaagaaa gttggcacaa ttatcactag aacatattta taaaatttat gataacaaag
      121 taactgcggt atctgacttt aatttagaaa tcgatgacaa agaattcatc gtttttgtag
      181 gtccatctgg ttgtggtaaa tctacaactt tacgtatgat tgctggacta gaagaaattt
      241 caaaaggcga actatctatt gatggtaaag taatgaacaa tgttgcgcca aaagaccgtg
      301 acatcgcaat ggtattccaa aactacgcat tatatccgca tatgactgta tatgataata
      361 tggcattcgg tttaaaactt cgtaaaatgc caaaagacga aattaaaaaa cgtgttgagc
      421 atgcagcaaa tattcttggc ttaactgaat acttaaaacg taaaccaagt gcactttccg
      481 gtggtcaacg tcaacgtgtt gctctaggtc gtgcaatcgt tcgtgacgca aaagtcttcc
      541 taatggatga accactttcc aacttggatg cgaaattacg tgtgcaaatg cgtgcggaaa
      601 tcacaaaact tcaccaacaa ttagatacta caatgattta cgttacccat gaccaaacag
      661 aagcgatgac aatggcaact cgtatcgtta tcatgaaaga cggtgttatc caacaagttg
      721 gttcaccaaa acaagtttac gatcacccag taaatatgtt cgtagccggc tttattggaa
      781 gcccagcaat gaacttcttc aaagggcgtt tagaaggttc taactttatc ggtgatgatt
      841 tcactattga agttccagaa ggcaaattaa aacttcttaa agatagaggg tttgacggta
      901 aagatatcgt tttcggtatt cgtccagaag atattcatga tgagccaatc gttattgaag
      961 ctaatcctgg ttatacgttc aaagcaacta ctattgttgc cgagcttact ggtgctgaat
     1021 ttatgcttca tagccgcgtt ggtacacatg aattcgtagc acgtgttgat gctcgctcgg
     1081 aacaccaacc aaacgaagta ctgactttag cattcgaaat gtctaaatct cacttcttcg
     1141 acccagaaac agaagataac ttaactgatt aatattctta gaaaaacccg ccaagctcgg
     1201 cgggttttct tatttttcaa aaggaaattt aattccccac tgcgttctaa catcgctcat
     1261 aatcgtgata acatcatttg ttaactgata agtcgtgttt tctcctgtcg cgatgctctc
     1321 ttccatagct ataatttcat attctaaagc tttacttgtt tcaccaacct caatttcttc
     1381 cacttttcca gttgccgtgt gtgtaacagt tgctcggctg gcacgcgggt attcatctac
     1441 agtgataaat ccttcttcac aagcaatgac acctcgtttt ggcattttag cacggaaaga
     1501 tagcgataca accgctagtt cctcttcttt atttttcagt aaaattccgg actgttcgtc
     1561 cacacctgtt tcgaatttct tcatcgtcgt taatacttca tccggcgttt cacttaaaaa
     1621 ataccgagca aaactaaggg catacgtacc aatatcaagt aatgctccac ccgccaaatc
     1681 catattataa aaacggtttt tcggatcttt ttctttggca cttccaaaag caacttgaat
     1741 aattttcaat ttaccaattg ctccagattc cacaatttct cgtaactttt tataaagcgg
     1801 catatggaat atggtcattg cttctttaac gattaagcct ttctctttgg ctagcacatt
     1861 gatttcatta agttcttcgc tacttacagt tatcgctttt tcagctaaaa cgtgtttgcc
     1921 gttatgtaaa cttttcatga taaattcata gtggttagag tgtggtgtag cgatataaac
     1981 tacatctatc gccggatcag caagcatttt gtcaaagtca tcgtatacat tttctattcc
     2041 gtattgactt gcgaatgctt gccccttctc taaactccgt gctcctaccg cataaatttc
     2101 acggttcatt cctcgcatac cttctgcaaa ttcgtgtgca attgaacctg gtccaagaat
     2161 tgcccagttt aaatttccca tcatggaact cctccaaaaa attattttag aactcgataa
     2221 aaactattgt atcataataa ctattccgat tcgcacatgg tatacttaag ttattaacta
     2281 aaaaggatga ttttatttga ctaaaaagta tttgatttgt tccgatatcg atggcacatt
     2341 actgcgccaa gatcaaactg tctctataaa aacgcgtgat ttaatccaaa ccttagaaaa
     2401 agatggccat attttttcta tttctacagg acggatgtat cgctctgccc gtgaagttgg
     2461 cttccaagtg agtaattccg gtcatgttat tgcctcaaac ggatcctacg cggctattcg
     2521 cgatgaacaa ctgcttaaaa ccactttaga agagaaggca attcgctcca cttacgatat
     2581 tatgagcgac ttcgatctac cacttttttt cttctctacc aatacacttt tctatacaaa
     2641 agaaccacct gctttcttcc aaaatcttgc tgataaaagt cgcttagata caggacacaa
     2701 tagtttttcg cttgtttcta ttaatgaaaa aggtgttttt gatgaaaaca tgcatcaatt
     2761 tttaaatgct attgtcgttg cggaagatga tgcctcaaaa ctaaccgaag ttcgcgctgc
     2821 tctaaatgaa gcgaatggta ttagagtcct ttcttcacac cataataatt tagaaatact
     2881 tcctgctaat tctgacaaaa aaacagccgt tgaagcgctt ggaaagcatt acaatattcc
     2941 acgcgaaaga attattactt ttggtgatgg cgaaaatgat attggcatgc tacaatatgc
     3001 tggaaccggt gttgcgatgg caaatgcaag cgataatgtc aaagcagcag cagatcatct
     3061 tactgacacg aatgaagcag atggggttta caaatttcta aaagaattca tttcataaga
     3121 gaagaggaaa agggatgaaa aaagggattt taaacgtatt attagttttt gctttaattg
     3181 cggggctttc cgtaccaagt tctatgcaag ttgaagctgc tgcaccaact ataaaagtgc
     3241 attttattga tgttggtcaa ggagatgcca tttatatcaa agcacctagt ggagaagata
     3301 ttttaattga tgcaggtaac aaaggtaaag ggaaaac
//
LOCUS       DASEAA010000233         3329 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.234, whole genome shotgun sequence.
ACCESSION   DASEAA010000233 DASEAA010000000
VERSION     DASEAA010000233.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3329)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3329)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3329
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.234"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            414..1316
                     /locus_tag="U0342_002811"
     CDS             414..1316
                     /locus_tag="U0342_002811"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424139.1"
                     /translation="MSKTVDGVTTNYHYDGDSINVLYETNNDGKVVRQYVYSDDGIRL
                     AMKMNGKSLYYHYNADDDVIALTDEAGKIVAEYTYDAWGNVLKNNASTEEAKANSYGY
                     KGYTYDKEIEQYYLMARYYEPEQGVFTAVDPDPGDEDDPQTMNGYNYASNNPVMLADP
                     DGLWAGVLFKFAAKGGKTAWKYAKKGAKKVSKSMKKWWKGFKAKPKKRQETKQTNSQL
                     KSFDSDKRKHITEPEHQWNSVSDGSWGQVQALIKRTMRSGKESSYKKSARKKTLIYNK
                     RKIIVTFVRKDGKIKIGNAWVERK"
     gene            1348..1962
                     /locus_tag="U0342_002812"
     CDS             1348..1962
                     /locus_tag="U0342_002812"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770430.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424140.1"
                     /translation="MINLEWEELDRLEVDGKLEQILKFSYDAWISDPKNTHFFVRAFF
                     LKWYLQIDNFDIESYEEQDEKLRYMYSYGEQELLDIPEVKWIMGYCLSLNPECFMGEE
                     DYDDLRLKGKKYLREASLANPEDVFLKDSYYASGGKSVKEFVKWESENREQLANYLQA
                     NFNYDSLFSDYFKEMVTMYISGKIQEKGILERLFSKLKKKDKGN"
     gene            2285..2875
                     /locus_tag="U0342_002813"
                     /pseudo
     CDS             2285..2875
                     /locus_tag="U0342_002813"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738130.1"
                     /note="incomplete; partial in the middle of a contig;
                     missing C-terminus; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT         1264 a          422 c          763 g          880 t
ORIGIN      
        1 atgaacgata tttagattgg aaaagagcaa atagagaaca atttcttctt tatgtagagg
       61 aaaattttaa ctatgattcg cttttttctg attgttttaa agaactaatc actatggatt
      121 tagataaaaa agattaaaaa agatgttttg gagagaagtt taggcaaaca gaagaagaaa
      181 catgaaacaa tttaagtcat tattaatgat gagtattttt ataagtgatt taattagcag
      241 tgagataaga gtgaacatga aaatttgttc ggtgaagtaa ccattaacca cggtaaccaa
      301 gcgatggcaa gtacacgtat atatgggata ccggcgaccg tttaagcagc attacgaaaa
      361 aaggcgagag caagccgttt acgagttata cgtacgatga tgataaccgc cacttgtcga
      421 aaaccgtcga tggtgtgacg acgaattatc attatgatgg cgatagcatt aatgttctat
      481 atgagacgaa taatgatgga aaagtcgtcc gtcaatatgt ttattcggat gacggaattc
      541 gattagccat gaaaatgaac ggaaagtcgc tctattatca ttacaatgcg gatgacgacg
      601 taattgcgct cacggatgaa gcaggtaaaa ttgtcgcgga atatacgtat gatgcttggg
      661 gaaatgtgct gaaaaacaat gcctctacag aagaagccaa agccaattcg tatggttata
      721 aaggatatac gtatgacaag gaaatcgaac aatattattt gatggcgcgt tattacgaac
      781 cagaacaagg cgtatttaca gctgttgacc cagacccagg cgatgaagac gatccgcaaa
      841 cgatgaatgg atataattat gcgagtaata atccagtgat gttagcagat ccagatggac
      901 tatgggcagg agtattgttt aagtttgccg caaaaggcgg aaaaacagct tggaagtacg
      961 cgaaaaaagg cgcaaaaaaa gtttcaaaga gcatgaaaaa atggtggaag gggtttaaag
     1021 ccaagcccaa gaaacgacaa gaaacgaaac aaacaaatag ccaattgaaa tcttttgact
     1081 cggataaaag aaaacatatt acggaaccag aacatcaatg gaattcggtt tcagacggga
     1141 gttggggaca agtacaagca cttattaaga gaactatgcg ttcaggtaaa gaatctagtt
     1201 ataaaaaaag tgctagaaag aaaactttga tttataataa gcggaaaatt attgtaacct
     1261 ttgttagaaa agatgggaaa attaaaattg gtaatgcgtg ggttgaaaga aaataaaaat
     1321 gtatgataga aaagaggtaa gagagctatg ataaatctag aatgggaaga attagatcgg
     1381 ttagaagtag atgggaagct tgaacaaatt ttgaaattca gctatgatgc ttggatttca
     1441 gatccgaaga atactcactt ctttgtaaga gcgtttttct taaagtggta cttacaaatt
     1501 gataactttg atattgagag ttatgaagaa caagatgaaa aattaagata tatgtatagt
     1561 tatggggagc aggaactact tgatattcca gaagtaaagt ggattatggg ctattgcctc
     1621 tcacttaatc ctgaatgttt tatgggagaa gaggattacg atgatttacg gttaaaagga
     1681 aagaagtatc ttcgcgaagc ttcattagct aatccagaag atgtattttt aaaagactct
     1741 tattatgctt ctggaggaaa gagtgtaaaa gaatttgtga aatgggaaag tgaaaacaga
     1801 gaacaactgg caaattatct gcaagcaaac tttaattatg actccctttt ctcagattat
     1861 tttaaggaaa tggttacgat gtatataagt ggaaaaatac aggaaaaagg cattttagaa
     1921 aggctttttt ctaagctgaa aaagaaagat aaaggtaatt aagttttata caagaaaaag
     1981 tgtaatatcg ttttttaaga cagtaagtta ggtataggat aactgggaat aggtataaaa
     2041 gaccttgatt aggaaatata ttccaattaa aaaatatgca ttcactgaaa cattgataga
     2101 tgttagtctt ttagatgtga gagtagaaca agttttaatg aaaaataaac agaaaatgag
     2161 ccctccattt ttatagggag ggcttattct aaaagtaaga gatgtaaata atacatatca
     2221 tgcgtttaag cagcatcacg aaaaaaggcg agagtaagcc tatacgtacg atgataatcg
     2281 ccgcttgtcg aaaacagtcg atggtgtgac gacgaattat cattatgatg gcgatagtat
     2341 tgatgttctg tatgaaactg atggtgatgg aaaagtagtt cgtcagtatg tttattcgga
     2401 tgataatgtt cgtttagcga tgaagatgaa cggcaaaacc ctttattatc actataatgc
     2461 gcatggcgac gtaattgcac tcacggatga agcaggtaaa attgtcgcag aatatgcgta
     2521 tgatgcttgg ggaaatgtgc tgaaaaacaa tgcctctacg gaagaagcca aagccaatcc
     2581 gtatggttat gcgggatata cgtatgacaa ggaaattgaa caatattact tgatggcgcg
     2641 ttattacgaa cctaagcaag gggtgtttac cgcttacgat ccagacccag gcgatgaaga
     2701 cgacccgcag acgatgaatg ggtataatta tgcgaataat aatccagtga gatatgtgga
     2761 tcctgatggg cattgggttt ggctagcaat taatgctgga tttgcagctt atgatggata
     2821 taaagcgtat aagaaaacaa aaagttggaa gagtgcagga tgggctgcag caaaaggtgc
     2881 ggttggagga ggtaagttta aaggtggtaa gaaagcctat cgttttataa agaaagccta
     2941 tataaaaact aaaaaatgga acagagaacg aaagtggtca aagggaactt ttaattccag
     3001 tagagcaagc ctaaattatc actataataa acatgtggtg aaaaagggaa gtaatataaa
     3061 taagtcgcag tacaccaaag aagctgtcaa actcaaacgg aaaaatagaa aatcaagaac
     3121 taaagctaat tttaaagttg gaaaaggata taaaattaag aatgggaaat attttggata
     3181 ttatacaaga ggagggaaga taattactta tggaaagaat aggtagggat aaatgcaaaa
     3241 acaataatta taatgacttg tttttaagaa aaagccaatt ggaaggaacg atgtatgtag
     3301 aatttaaata tagttccgct gaaaaagga
//
LOCUS       DASEAA010000234         3287 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.235, whole genome shotgun sequence.
ACCESSION   DASEAA010000234 DASEAA010000000
VERSION     DASEAA010000234.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3287)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3287)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3287
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.235"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(143..754)
                     /locus_tag="U0342_002814"
     CDS             complement(143..754)
                     /locus_tag="U0342_002814"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464523.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CPBP family intramembrane metalloprotease"
                     /protein_id="HEM2424141.1"
                     /translation="MKSIKIDYKLVLGLVLCALLVILTYQFPRVFWYLYGAGMLFLLS
                     FVIFNDDLKKEFSFVKGILPGIFSGIVLYIIFYIGAFIIKVMPGGLENSVEAAFNKYS
                     THSLIIWLLLIVAIIPGEEIFWRGFVLKRLNHYFNPWFSNVFAALLCMVMMFPSGNFA
                     AIIGIFVASLVWNIMYSYRPSLLMLYLSHLTFAFLLLAALPIY"
     gene            900..1691
                     /locus_tag="U0342_002815"
     CDS             900..1691
                     /locus_tag="U0342_002815"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464524.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="carotenoid biosynthesis protein"
                     /protein_id="HEM2424142.1"
                     /translation="MLEKNYKFLLWIYIFWFLGSVLLVSLHIIPPELTAVQSLFLVFT
                     GVFAAVFFIMQYGKWLGSAITLLIFVVSTCIEWMQLSYTDEYIGSTLGGSVYGIPITM
                     GFIWVGMVAGTHIIAREITLKINIDWIRGGIYSFIAATMVMIFEVLIEPITMQSKQLY
                     ITQNGFTILQLSDFINWWLLGLILHLMIYFILSLTDSWERLKYPDLKSEIVIVYWIII
                     AFFVFLSFYLDLWTSIAIIIVSNIIFTACYFFSLEKEAQPKKKSE"
     gene            complement(1692..3164)
                     /locus_tag="U0342_002816"
     CDS             complement(1692..3164)
                     /locus_tag="U0342_002816"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464525.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NAD(P)/FAD-dependent oxidoreductase"
                     /protein_id="HEM2424143.1"
                     /translation="MKLESKKKIAIIGAGPGGLAAGMLLSQLGYQVNIYEKNDRIGGR
                     TALHRMGKYSFDVGPSALTMTHVLTSLFMDCNRNILDYVSLLPINPIHTLYFKDITFP
                     LYSDQSETKAVIQTYFPGEEAGFERFMKENTKKMLYISPLNQFNYSSLFDFFRPTTLR
                     AIPSLTLGRSLMDDLARYFNSKYLRIAFSLQMRYLGMSPWDIPAAYSIIPFSEYYYGT
                     FHPIGGQNKIVEAMQQVVTENKGKFFFNSEVTAFESNGKEITGAVLANGKTIEADYYF
                     TNLDFIYSLTNEHPDKLDNKEYSSSAFILYLGLKTVLPFSHQSIIFPENYREFAHNTM
                     HKKILSKDIAIHLTNPSATDNTMAPINHSSIRIMVPVPNNTSNIDWKKETPAFRQLVL
                     ETIKERLDLPDLESQIEEEYIITPIDWEKKYHVKHGAIFGLQHLWRQHGYLHPSKKSP
                     TFKNLFVIGAGAMSGSSLPFIIENAQIATQKFLQKEKKSE"
BASE COUNT         1072 a          542 c          572 g         1101 t
ORIGIN      
        1 aaatgagaaa tgaaaggtct tgactttgac tatctttgac cttatgactt tattatatac
       61 tgacctattt tgactttcaa gtattttgct tatttttttt ataaaaaaaa cacccctaaa
      121 aaggagcgtt tttgtgctat ttttaataaa ttggtaaggc tgcgagtaac aaaaacgcaa
      181 aggttagatg cgataaatat agcatgagta ggcttgggcg ataggagtac atgatattcc
      241 atacgagcga agcgacaaag ataccgataa tcgctgcaaa gttgccactt gggaacatca
      301 ttaccataca tagtaacgct gcaaaaacat tcgaaaacca aggattgaaa taatggttta
      361 atcgttttaa tacgaagccg cgccagaaaa tttcttctcc agggataatg gccacgataa
      421 gcagtagcca aattatcaaa gaatgcgtcg aatacttatt aaaagcagct tctacagaat
      481 tttctagacc gcctggcatt actttaataa taaaagcgcc tatgtaaaaa ataatataaa
      541 ggacaattcc ggaaaaaata cctggcaaaa tgcctttaac gaacgaaaac tcttttttta
      601 aatcatcatt aaaaatcaca aaactaagta aaaataacat cccagctcca tataaatacc
      661 aaaaaacacg tgggaactga tatgttagta taacgagtag ggcgcataaa acaaggccca
      721 gtacaagttt ataatcgatc ttgatgcttt tcaaaatact ttacacctct tcttaacaaa
      781 tacttctcat actactttaa aacaaatgaa atcgtttggc aacaattaaa caaaagataa
      841 gataaaagtt gtggaattta ataaatccta tataatgaaa aaataggagt ggttcataga
      901 tgttagaaaa aaactacaaa tttttacttt ggatttatat attctggttt ttaggtagcg
      961 ttttgttagt atccttacac attattccac cagagctaac tgcagttcaa tcactatttt
     1021 tagtatttac tggtgttttt gcggctgttt tctttattat gcaatatggt aaatggcttg
     1081 gttctgctat tacgctactt atttttgttg taagtacatg tattgaatgg atgcaactaa
     1141 gttatacaga tgaatatatt ggttcaacgt taggtggaag tgtttacgga attcctatta
     1201 caatgggctt tatttgggtc ggaatggttg ccgggacgca tattatcgct cgggaaatta
     1261 cattgaaaat taatattgac tggattcgtg gaggtattta ttcgtttatc gcagcaacga
     1321 tggtaatgat ttttgaggtt ttaatcgaac caattacaat gcaatcaaaa caactttaca
     1381 ttacgcaaaa cggcttcacg attttgcagt tatctgactt tattaattgg tggcttttag
     1441 gacttatttt acatttaatg atttacttta ttttgagttt aacggatagt tgggagcgtc
     1501 ttaaatatcc agatttaaaa tcagaaattg tcatcgttta ttggattatt attgcctttt
     1561 tcgtattttt gtccttttac cttgatttat ggacatctat tgcgattatt atcgtttcta
     1621 atattatttt cactgcttgt tattttttca gtttggaaaa agaagcgcag cctaaaaaga
     1681 aatccgaatg attactcgga tttcttttct ttttgtaaaa atttctgggt tgcgatttgc
     1741 gcattttcaa taataaatgg aagcgagcta cccgacatcg cgcctgcacc aattacaaat
     1801 aagtttttga atgtaggcga ttttttggag ggatgtaagt aaccgtgctg gcgccataaa
     1861 tgctgtaaac caaagatcgc gccgtgttta acatgatatt tcttttccca gtctatcggt
     1921 gtaatgatat attcttcttc aatttgcgat tctaaatctg gtaaatctaa ccgttctttg
     1981 atagtttcta gcactaattg acgaaaagca ggtgtttctt ttttccaatc aatattactc
     2041 gtattgttag gcacaggaac cataattcga atactagaat gattaattgg cgccattgta
     2101 ttatcagttg cagaaggatt agtcaaatgt atagcgatat ccttagagag gattttttta
     2161 tgcattgtat tatgcgcaaa ttctcggtaa ttttcaggga aaataattga ttgatgcgaa
     2221 aaaggtaaca ctgtttttaa accaagataa aggataaagg cagaagagga gtattcttta
     2281 ttgtccaatt tatctggatg ctcatttgtt aaagaataaa tgaaatctaa attggtgaaa
     2341 taataatctg cttcaattgt ttttccattg gcaagaacag cgccagttat ttctttacca
     2401 ttcgattcaa atgctgtcac ttcggaattg aagaaaaact tccctttatt ttctgtaact
     2461 acttgttgca tcgcttcgac aattttattt tgcccaccaa ttggatgaaa ggttccataa
     2521 taatattcgg aaaaaggaat aatactataa gcagctggaa tatcccatgg tgacatgcct
     2581 aaataccgca tctgtaagga aaaagcgatg cgaaggtact tactattaaa atatcttgct
     2641 aaatcatcca tcaacgatcg tccaagtgtc aaactaggta tagcacgcaa agttgtaggg
     2701 cggaaaaaat caaataaaga actataatta aattgattga gcggcgaaat atatagcatt
     2761 tttttcgtgt tttctttcat aaagcgttca aaaccagctt cttcgccagg aaagtaagtt
     2821 tggataaccg cttttgtttc agattgatcg ctataaagcg ggaaggtgat atctttaaaa
     2881 taaagcgtat gaattggatt gattggtaaa agcgaaacat aatccaaaat attacgatta
     2941 caatccataa aaagagaagt caaaacatgc gtcatggtga gtgcagaagg tccgacatca
     3001 aatgagtatt tacccattct gtgtaacgcc gttcttccac caattcgatc atttttttca
     3061 tagatgttta cttgataacc tagttgactt aatagcatac cggccgccaa cccaccaggt
     3121 ccagctccta taatggcaat tttcttttta ctttccaatt tcaaacgctc ctttaccccg
     3181 tttatataca tataaaaaac gcaaaaatat agagcattat cactcggaaa tgctttattt
     3241 ttgcgcgctt aaaaactatt ctgttttttt attcttctgt ttcttct
//
LOCUS       DASEAA010000235         3199 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.236, whole genome shotgun sequence.
ACCESSION   DASEAA010000235 DASEAA010000000
VERSION     DASEAA010000235.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3199)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3199)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3199
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.236"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..106
                     /locus_tag="U0342_002817"
     CDS             <1..106
                     /locus_tag="U0342_002817"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463542.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="spermidine acetyltransferase"
                     /protein_id="HEM2424144.1"
                     /translation="IREGELIDEFFVDGTYHDAIRMCIFQHQYQEMDI"
     gene            248..1216
                     /gene="mvk"
                     /locus_tag="U0342_002818"
     CDS             248..1216
                     /gene="mvk"
                     /locus_tag="U0342_002818"
                     /EC_number="2.7.1.36"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463543.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mevalonate kinase"
                     /protein_id="HEM2424145.1"
                     /translation="MATGIGTAKMILCGEHAVVYGEPAISVPFTQAIVTTNVENSTKT
                     KFSSAFFSGDLDDMPDFLAGIKALVVDVLNEIGKGECVSIHVVSGVPIGRGLGSSAAV
                     ATSIARGLYKYFNQELDSKKLLAIVNAAEKIAHGNASGVDAITVVSEKPVWYERDRKL
                     EIMHFSKKITFVVADTGVPSETRDAVKDVQALYKENQTEIGKIIHQLGDISREIKTHL
                     EGDADTVKIGAAMNKAQSYLETLTVSDSSLEKLIEVARSSGADGAKLTGGGRGGCIIA
                     VAKNQEIAEQITKELHNAGAAQEWIFTIGEGSYESDSHRTHECGAN"
     gene            1173..2144
                     /gene="mvaD"
                     /locus_tag="U0342_002819"
     CDS             1173..2144
                     /gene="mvaD"
                     /locus_tag="U0342_002819"
                     /EC_number="4.1.1.33"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463544.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="diphosphomevalonate decarboxylase"
                     /protein_id="HEM2424146.1"
                     /translation="MRATAIAHTNVALIKYWGKRDEHLILPANSSLSFTVDKFYTKTT
                     VEWDENLAQDTFILNNEQKTDAKVARFIDKMREEFGISAKAKITSENHVPTAAGLASS
                     ASAFAALALAGSSAAGRKDTKEYISRLARFGSGSASRSVFGDFVIWEKGELADGSDSF
                     AVPFTNKLCDKMSLVVAVVSDKEKKVSSRDGMRLTVETSPFFEKWVSAAETDLEEMKQ
                     AILDEDFIKVGEITERNGMKMHATTLGAEPPFTYFQPKSLEIMDAVRELRENGIPAYF
                     TMDAGPNVKVICERENENIVADKLSGLAKNVLICHAGKEASVVSDEK"
     gene            2125..>3199
                     /locus_tag="U0342_002820"
     CDS             2125..>3199
                     /locus_tag="U0342_002820"
                     /EC_number="2.7.4.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463545.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phosphomevalonate kinase"
                     /protein_id="HEM2424147.1"
                     /translation="MYQMKNKLQVKIPGKLYVAGEYAVVESGHTAILTAVNRYITLTL
                     EDSERNELWIPHYENPVSWPIGGELKPDGEHWTFTAEAINIATTFLKSEGIELTPVKM
                     VIETELIDQSGAKYGLGSSAAATVAVINALMTKFYPEISMLKKFKLAALSHLVVQGNG
                     SCGDIASCMYGGWIAYTTFDQEWVKHRLAYKSLEWFMKEPWPMLQIETLEEPVPTFSV
                     GWTGTPVSTGKLVSQIHAFKQEDSKNYQHFLTRNNEIMKQIIQAFHTKDEELLYSSIK
                     ENRRILQELGTKAGVNIETSLLKELADSAENMGGAGKSSGSGGGDCGIAFSKTKELAE
                     KLVNEWEKLGIKHLPFHTGRVQIT"
BASE COUNT         1073 a          523 c          723 g          880 t
ORIGIN      
        1 tattcgtgaa ggcgaactaa ttgatgagtt tttcgttgat ggaacttatc atgatgctat
       61 tagaatgtgt attttccaac atcaatatca agaaatggat atttaaaagg tgattggcgc
      121 gggaaaagtt gcgccaatca ttgttttggg tcaaaaaaag ttctataata aggttttagt
      181 gaaaaaatta tggtatcatg aagtattaaa gtttgtacta ttttgatgga gaaaggattg
      241 gcgtacattg gctacaggca ttgggacagc taaaatgata ttatgcggag aacatgcagt
      301 tgtatacgga gaaccggcga tttcagtccc atttacacaa gcaatagtaa cgacaaatgt
      361 agaaaattct acaaaaacca aattttcttc ggcatttttt tcaggtgatt tagatgatat
      421 gcctgatttc ttagcaggaa tcaaagcatt agttgtagat gttttaaatg agattggaaa
      481 aggcgaatgc gtttctatcc atgtagtttc aggtgttcca attggacgag gtttaggttc
      541 aagtgccgct gtagcaacaa gtattgcgcg tggcttatat aaatatttta atcaagaatt
      601 agactcgaaa aaattattag ccattgtgaa tgcggcagaa aaaattgctc atggaaatgc
      661 tagtggtgtt gatgctatca cggttgtgag tgaaaaacca gtatggtatg agcgagatcg
      721 aaaactagaa attatgcatt tttcaaaaaa aatcacgttc gtagtagcag atactggagt
      781 tccaagtgaa accagagacg cggtgaagga tgttcaagct ttatataaag aaaatcaaac
      841 agaaattggt aaaataattc atcaactcgg cgatatttcc cgggaaataa agactcattt
      901 agaaggcgat gcagatactg tgaaaatagg tgctgcaatg aataaggcac aatcttattt
      961 agaaactttg acagtaagtg atagtagttt agagaaatta atagaagtag ctagaagtag
     1021 tggtgcagac ggggcaaaac ttacaggtgg cggtagaggt ggatgtatta tcgctgtagc
     1081 aaaaaatcaa gaaatcgctg aacaaataac gaaggagctt cataatgctg gagctgcaca
     1141 agaatggatt tttacgattg gagaaggtag ttatgagagc gacagccatc gcacacacga
     1201 atgtggcgct aattaaatac tggggaaaac gcgatgaaca cttgattcta cctgcaaaca
     1261 gtagtttatc cttcacggta gataaatttt atacaaaaac aacggtagaa tgggacgaaa
     1321 acttagccca ggatacattt attctaaata atgaacaaaa aacggatgca aaagtagctc
     1381 gttttataga taaaatgcgt gaagaattcg gtatttcagc aaaagcaaaa atcacttccg
     1441 aaaatcacgt tccaactgcg gccgggcttg cttcatcggc ttctgcattt gcagctcttg
     1501 cacttgctgg atctagcgct gctggcagaa aagacacaaa agaatatatt tccagactgg
     1561 ctcgtttcgg gtctggttct gcttctcgtt ccgttttcgg agattttgtc atttgggaaa
     1621 aaggcgaact cgcggacggt agtgattcat ttgcagtacc tttcaccaac aaattatgtg
     1681 acaaaatgtc tcttgtagtc gcagtcgttt cggataaaga aaagaaagtt tctagtcggg
     1741 atggaatgcg cctaactgtt gaaacatcac cgtttttcga aaaatgggtt tctgctgctg
     1801 aaacagactt ggaagaaatg aaacaagcta ttttggatga agatttcatc aaagtgggcg
     1861 aaatcacaga acgaaacgga atgaaaatgc atgcgacaac gcttggtgcc gagcctccat
     1921 ttacttattt tcaaccgaag tcccttgaaa taatggatgc tgttagagaa ttacgagaaa
     1981 atggtatacc ggcctatttt acaatggatg ctggtccaaa tgttaaagtt atttgtgagc
     2041 gtgaaaatga aaatatcgta gcagataagt tgtcaggttt ggctaaaaac gttctaattt
     2101 gccacgctgg taaggaagcg agtgttgtat cagatgaaaa ataaactaca ggttaaaata
     2161 cccggaaaat tatatgtagc tggtgaatat gcagttgtag aatcaggtca tacggctatt
     2221 ctaactgcag ttaatcgtta tataacgcta actcttgaag atagtgaacg caatgaatta
     2281 tggattccac attatgaaaa tccagtttca tggccaattg gcggagaact taaaccagac
     2341 ggggaacatt ggacgtttac agctgaagca attaatatcg cgacaacttt cctgaaatca
     2401 gaaggaatcg agctaacgcc tgtgaaaatg gtcattgaaa cagaattaat cgaccaatct
     2461 ggcgcaaaat atggactcgg ttccagtgca gcggctacag ttgctgtaat caacgcgcta
     2521 atgacgaaat tttatccaga aatatcaatg cttaaaaaat tcaaacttgc tgcactttcg
     2581 catttagtag tacaaggaaa tggctcttgt ggcgacattg cttcttgtat gtatggcggc
     2641 tggattgcgt atacaacgtt tgatcaagaa tgggtgaagc atcgtttggc ttataaatca
     2701 ctcgaatggt ttatgaaaga gccgtggcca atgcttcaaa tcgaaacatt ggaagaacca
     2761 gtgccgactt tttctgtcgg ttggacgggc acacctgtaa gtaccggaaa actagtttcg
     2821 caaattcatg cttttaaaca agaagatagc aagaattacc aacatttttt aactagaaat
     2881 aacgagatta tgaagcaaat aattcaagct ttccatacga aagatgagga attgctttat
     2941 tcatctatta aagaaaatcg tcgcattctt caagaacttg gaacaaaagc tggcgtaaat
     3001 attgaaacaa gcttactaaa agaactagcg gactcagctg aaaacatggg tggcgcagga
     3061 aaatcatctg gctctggtgg cggagactgc ggaatagctt tctcgaaaac gaaagaacta
     3121 gccgaaaaac tcgttaatga gtgggaaaag cttggtatta agcatttacc tttccataca
     3181 gggagagttc aaattactg
//
LOCUS       DASEAA010000236         3150 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.237, whole genome shotgun sequence.
ACCESSION   DASEAA010000236 DASEAA010000000
VERSION     DASEAA010000236.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3150)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3150)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3150
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.237"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            254..463
                     /locus_tag="U0342_002821"
     CDS             254..463
                     /locus_tag="U0342_002821"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464553.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA-dependent RNA polymerase auxiliary subunit
                     epsilon family protein"
                     /protein_id="HEM2424148.1"
                     /translation="MIFKVFYQETLTETPVREKTQSLYVEAESEVKVRQLLKDEPFHI
                     EFVEKISDAHLAYEKENPDFALWEK"
     gene            470..2137
                     /locus_tag="U0342_002822"
     CDS             470..2137
                     /locus_tag="U0342_002822"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464552.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease J"
                     /protein_id="HEM2424149.1"
                     /translation="MKFVKNNETAVFALGGLGEIGKNTYGVQFQDEIILIDAGIKFPE
                     DELLGIDYVIPDYSYLVKNKDKIKGLFITHGHEDHIGGVPYLLRDLNIPIYAGKLASA
                     LIRNKLEEHGLLRQTKIYEYEEDDVFKFRKTSISFFRTTHSIPDTYGIVVKTPSGNIV
                     HTGDFKFDFTPVGEPANLTKMAEIGKEGVLCLLSDSTNAEVPNFTMSERVVGESIKNI
                     FRDVEGRIIFATFASNIYRLQQVVESSIETGRKIAVFGRSMESAMEIGKQLGYIQAPK
                     DTFIDVHQLNKTPAGNVTILCTGSQGEPMAALSRIANGTHRQIQIQPGDTVVFSSSPI
                     PGNTTSVNRTINLLYQAGAEVIHGKVNNIHTSGHGGQQEQKLMLRLMKPKFFMPIHGE
                     FRMQKIHAESAEECGVPEENSFIMANGDVLALTSETAHVAGKIHAASVYIDGSGIGDI
                     GNIVLRDRRILSEEGLVIVVVSIDMKNSRVMAGPDIISRGFIYMRESGNLIGEAQGLL
                     TRHLNKVMEQKTTQWSEIKNEITDTLQPFLYEKTKRRPMILPIIMEV"
     gene            2246..>3150
                     /locus_tag="U0342_002823"
     CDS             2246..>3150
                     /locus_tag="U0342_002823"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464551.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LCP family protein"
                     /protein_id="HEM2424150.1"
                     /translation="MTETRAEKKKKTTSTFTKVMKIASVALLGIIFFSITGLAAKYYI
                     TVQNTFSKINVPLESSNKTLSDLEKKKPFSVLLMGSDARPGEKNGRADTIILATANKQ
                     QNAVEMVSIPRDTKVDYGNGDIGKINASYSNGGPSGTVSAVEKLMPGVPVDYFISINM
                     EGFKDLVDAVGGITVYNDIDLTEVNSKFVKGNITLNGTEALQYVRIRHEDPRGDFGRQ
                     DRQRDVIIGIANKVISSSGVSNFESIMKAVGDNFQTNMTLTDITSMAANYSSVLKNVD
                     SQELKGEGEMIYSESYGFDLYYFAP"
BASE COUNT         1057 a          573 c          588 g          932 t
ORIGIN      
        1 attcccaaaa taaaggtatg caattataac ggataagaaa tttaacatac gtgcacagct
       61 atttttatac attagtctgt ggtaattttt ctttgtcttt tttatgcctg attgtcagta
      121 tctcgtgcac ccatatccgc ttgctactaa gtccacaact gaaagcaagc caattattac
      181 tgaataatta ttaggttttc gaccagagaa tctattttta aaaactaaac ttaaaattta
      241 aggagagaaa aacatgattt ttaaagtatt ttatcaagaa acactgacag aaacacccgt
      301 acgcgaaaaa acacaatctt tatacgtaga agcggaaagc gaagtaaaag tacgccaact
      361 tttaaaagat gaacctttcc acatcgaatt tgtcgaaaaa attagtgacg cgcacttagc
      421 ttatgaaaag gaaaacccag acttcgcgct ctgggaaaaa taagcctata tgaaatttgt
      481 taaaaataat gagacagctg ttttcgccct tggtggacta ggcgaaatcg gtaaaaacac
      541 atatggcgta caatttcaag acgaaattat tctaattgat gcaggaatca agttcccgga
      601 agacgaactt cttggtattg attatgttat tcctgactac agttacctag ttaaaaacaa
      661 agataagatt aaagggcttt ttatcaccca tggtcatgaa gatcatatcg gtggcgttcc
      721 ttacctactt cgcgatctta atatcccaat ttacgctggg aaacttgcga gtgcacttat
      781 ccgcaacaaa ttagaagaac atggcttgct tcgtcaaacc aaaatttatg aatatgaaga
      841 agatgacgtt tttaaattca gaaaaacaag tatctctttc ttccgtacaa cccatagtat
      901 tcctgatacg tatggtattg ttgtcaaaac tccatctggt aacatcgttc atactggtga
      961 cttcaagttt gattttactc cagttggcga accagcaaac ctaacaaaaa tggctgaaat
     1021 cggtaaagaa ggcgttcttt gtttactatc tgatagtaca aatgcggaag taccaaattt
     1081 caccatgagt gagcgtgtcg ttggcgaaag tattaaaaat attttccgcg atgtagaagg
     1141 acgaattatt ttcgctacct tcgcatctaa tatttaccgt ttacaacaag tagttgaatc
     1201 ctctatcgaa actggccgta aaatcgctgt tttcggtcgt agtatggaat ctgctatgga
     1261 aatcggtaaa caattaggct atattcaagc gccaaaagat acatttattg atgtgcatca
     1321 acttaataaa acacccgctg gaaatgtgac tatcctttgt acagggagtc aaggtgaacc
     1381 aatggctgct ctttctagaa ttgctaatgg tacgcaccgc caaatccaaa ttcaaccagg
     1441 tgacacggta gtcttctcgt cttccccaat ccctggtaat acaacgagtg taaaccgcac
     1501 aatcaattta ctatatcaag ctggtgcaga agttatccat ggtaaagtaa ataatatcca
     1561 tacttctggt cacggtggtc aacaagaaca aaaactaatg cttcgtttga tgaaacctaa
     1621 attctttatg ccaattcatg gtgaattcag aatgcaaaaa atccatgcag agtctgctga
     1681 agaatgtggt gttccagaag aaaatagctt tattatggca aatggagatg tactcgcatt
     1741 aacaagtgaa acagctcatg ttgctggtaa aatccatgca gcaagcgtat atattgatgg
     1801 tagcggtatt ggcgatatcg gtaatattgt ccttcgcgat cgtcgtattc tttctgaaga
     1861 aggcctcgta attgttgttg tatccattga tatgaaaaat tctcgtgtga tggcaggacc
     1921 tgatattatt tcacgcggct tcatttatat gcgtgaatcc ggtaatctca tcggagaagc
     1981 acaaggcctc ctaacgcgac acttaaataa agtaatggaa caaaaaacaa cgcaatggtc
     2041 tgaaatcaaa aatgaaatta cagatacttt gcaacctttc ttgtacgaaa aaacaaaacg
     2101 tcgtccaatg attttaccaa taatcatgga agtatagttt tcaagacgat aaatggtttc
     2161 aaaatcattt atcgtttttt tgttgatttc tcagaaagac gatggtatgt ttaaacaaac
     2221 aaaatagaaa gacgaggaaa attttatgac agaaactagg gctgaaaaaa agaaaaaaac
     2281 aacgtccact tttactaaag ttatgaaaat tgctagtgtt gctcttttag gaattatctt
     2341 cttctctata acaggattgg cagcgaagta ttacatcacc gttcaaaata ccttttcaaa
     2401 aataaatgtc cctctagaat caagtaataa aactttaagt gatttagaaa agaaaaaacc
     2461 tttctcagtg ttactcatgg gttcagatgc ccgacctggt gaaaaaaatg gtcgcgcaga
     2521 tacaattatt cttgccacag ctaataaaca acaaaatgcc gtagaaatgg ttagtattcc
     2581 tcgtgataca aaagtagact acggaaatgg tgacattggt aagattaatg cctcttactc
     2641 caacggtggc ccctcaggaa cagtttcagc ggtcgaaaaa cttatgccag gagttcccgt
     2701 agattatttc atttcaatca atatggaggg ctttaaagac ctagttgatg cagttggtgg
     2761 tattactgtt tataacgata tcgacttaac agaagtaaat agcaaatttg ttaaaggtaa
     2821 cattacttta aacggaacag aagctttaca atatgttcgt attcgtcatg aagatcctcg
     2881 tggtgacttt ggtcgtcaag atagacagcg cgatgtcatt attggtattg cgaataaggt
     2941 tatcagttct tccggagttt ccaattttga aagcattatg aaagccgttg gcgataattt
     3001 ccaaactaat atgactctta cagatattac atctatggct gcaaattatt cttccgtact
     3061 taaaaacgtc gattcccaag aacttaaagg cgaaggggaa atgatttata gcgagtctta
     3121 tggatttgat ttatattact tcgcccctga
//
LOCUS       DASEAA010000237         3121 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.238, whole genome shotgun sequence.
ACCESSION   DASEAA010000237 DASEAA010000000
VERSION     DASEAA010000237.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3121
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.238"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            81..323
                     /locus_tag="U0342_002824"
     CDS             81..323
                     /locus_tag="U0342_002824"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464142.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424151.1"
                     /translation="MHPIEQLLANNNTTTTDVESNTRLKEGSLQKIIDKDIRTSDISL
                     RILSQIAIFLNTGADIIAKQLSDIEVVNDLVFLIED"
     gene            complement(320..853)
                     /locus_tag="U0342_002825"
     CDS             complement(320..853)
                     /locus_tag="U0342_002825"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464141.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2424152.1"
                     /translation="MEIRELKNGQIIMIREATKEDSSNIITYLNEVAGETDYLSFGQG
                     EFAFSIAEEAEYIEENDKNPGSVMLLCFIDDELASISQLMGHMKKRELHTSELAISIR
                     KKYWGLGIGTICMGELIKYAKSSEYLKLIYLEAVSENKRAINLYKKFGFIEAGEIPAL
                     MQVDSRYLDVTMMYLVI"
     gene            complement(948..1889)
                     /locus_tag="U0342_002826"
     CDS             complement(948..1889)
                     /locus_tag="U0342_002826"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464140.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NADP-dependent oxidoreductase"
                     /protein_id="HEM2424153.1"
                     /translation="MKAVVIENYGGKEELKEKEVAMPKAGKNQVIVKEAATSINPIDW
                     KLREGYLKQMMDWEFPIILGWDVAGVISEVGEGVTDWKVGDEVFARPETTRFGTYAEY
                     TAVDDHLLAPLPEGISFDEAASIPLAGLTAWQALFDHAKLQKGEKVLIHAGAGGVGTL
                     AIQLAKHAGAEVITTASAKNHELLKSLGADQVIDYKEVNFKDVLSDIDVVFDTMGGQI
                     ETDSYDVLKEGTGRLVSIVGISNEERAKEKNVTATGIWLQPNGEQLKELGKLLANKTV
                     KPIVGATFPFSEKGVFDAHALSETHHAVGKIVISFNK"
     gene            complement(1892..2341)
                     /locus_tag="U0342_002827"
     CDS             complement(1892..2341)
                     /locus_tag="U0342_002827"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464139.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="winged helix-turn-helix transcriptional
                     regulator"
                     /protein_id="HEM2424154.1"
                     /translation="MGVKTLKPCTERSELLYRMHLLSKEISHVFEQQTNMSFTKVEIL
                     FHIQQTPGQSQNRLREKLYIDSASITRHLKRMEAQGLIVRKKQDENKRYTYLFLTSAG
                     EAELATLLLEKEKFQNGALEAFSEEEVSALLKSVTKMMNNVEKMEEK"
     gene            2510..>3121
                     /locus_tag="U0342_002828"
     CDS             2510..>3121
                     /locus_tag="U0342_002828"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FMN-dependent NADH-azoreductase"
                     /protein_id="HEM2424155.1"
                     /translation="MTNVLFIKANGLPAERSVSVALYEIFLTEYKKSHPDDNVTELDL
                     FEADLPYYDVTMMSGLHKEAAGETLSPEEKRLADIANSYLDQFLAADKIVMAFPLWNF
                     SIPAQFLTYLFYLNQAGKTFKYTANGPVGLVADKKIALLNARGGIYSDGPMQSFEMSL
                     SYVKNVLAHFGISEPEMVIVEGHNAKPDQAKDIISAGAKEAVEL"
BASE COUNT          940 a          671 c          484 g         1026 t
ORIGIN      
        1 tcaaggcttt atagtttatc caagaagcaa atttagttat aattaattca taaagttaac
       61 tattgaaacg aggtgaaatg atgcatccga ttgaacaatt gttagcaaat aataacacta
      121 ctaccactga tgttgaatcc aatactcgct taaaagaagg ctctttacag aaaattattg
      181 acaaagatat tcgtacttct gacattagcc ttcgtattct tagtcaaatt gctatttttc
      241 ttaacactgg agccgatatt atcgcgaagc aacttagtga tatagaagta gttaatgatc
      301 tagtctttct tattgaagac taaataacca aatacatcat ggttacatct aaataacggc
      361 tgtccacttg cattaacgct ggaatttcac cagcttcgat aaatccaaat tttttgtaca
      421 aattaattgc gcgtttattc tctgatacag cttctaaata gataagcttt aaatactcgc
      481 tacttttagc gtattttatt aattcaccca tgcaaattgt gccaataccc agaccccaat
      541 atttcttccg tatcgaaata gctagttcag aagtatgtaa ttctcgcttt ttcatatgcc
      601 ccataagttg agaaatactc gcaagttcat catcaataaa acataacaac ataacagagc
      661 ctgggttctt atcattttct tctatgtatt cagcttcttc cgctatacta aacgcaaact
      721 caccttgacc aaatgataaa taatctgtct caccagctac ttcatttaaa taagtaataa
      781 tattactaga gtcctctttt gtagcttccc gaatcattat tatttgccca ttcttcaatt
      841 ctcttatttc catctagaca ccaccttttt tgctattata gcccatctaa cttattccag
      901 caaacaacaa aaaaagctag atgatagcat ctagctttcc gaaaatctta tttattaaat
      961 gaaatgacta tttttccaac cgcgtggtgc gtttcgctta atgcatgtgc atcaaaaaca
     1021 cctttttcag agaatgggaa agttgcgccg acgattggtt taaccgtttt attagcaagc
     1081 aatttgccaa gttctttcag ctgttcgccg tttggttgca accaaattcc agttgctgtt
     1141 acattttttt ctttcgcacg ttcttcattt gaaataccga cgatactaac taaacgccct
     1201 gtgccttctt ttaatacgtc ataactatct gtttcgattt gaccacccat tgtatcgaac
     1261 accacatcaa tatcagaaag aacatcttta aaattaactt ctttataatc aatgacttgg
     1321 tctgcgccaa gagattttag taattcatgg tttttcgcac tagctgttgt gattacttct
     1381 gctcctgcat gtttggcaag ctgaatcgcc aacgtcccaa caccaccagc accagcatga
     1441 atcaagactt tttcaccttt ttgtaatttc gcgtgatcga acaatgcttg ccaagcagtt
     1501 aagcctgcaa gtggaatcga tgctgcttcg tcaaaactaa ttccttctgg aagtggtgca
     1561 agcaagtgat catctaccgc tgtatattca gcatacgtac caaaacgcgt tgtctcaggg
     1621 cgtgcgaata cttcatcgcc gactttccaa tctgttacgc cttctccaac ttcggaaata
     1681 acacccgcta catcccatcc taaaataatc gggaattccc agtccatcat ttgttttaag
     1741 tatccttcac gaagtttcca atcaattggg ttaattgatg tcgctgcttc tttgacaatc
     1801 acttgatttt tacccgcttt tggcatagct acttcttttt cttttaattc ttctttgcca
     1861 ccataatttt caattacaac tgctttcatt tttacttctc ctccattttc tctacattat
     1921 tcatcatttt tgtgactgat ttaagtaacg cactaacttc ttcttctgaa aaggcttcta
     1981 gcgccccgtt ctgaaatttt tctttttcca aaagtaaagt ggctaattcc gcctcacccg
     2041 ctgatgttaa aaataaatac gtatagcgtt tgttttcatc ttgctttttc cgaacaatca
     2101 gcccttgcgc ttccattcgc ttcaaatgac gggtaatact tgccgaatca atataaagct
     2161 tctctcgtag tcgattttga ctttgacctg gtgtttgttg aatatgaaat agaatctcta
     2221 ctttcgtaaa actcatattc gtttgttgtt caaatacatg gctaatttcc ttggataata
     2281 agtgcatccg gtaaagtaat tcagatcgtt ctgtacatgg tttcagcgtt ttcaccccca
     2341 tagttgatac gtcaaatgat atatcaacta ttatacgctt cctttccaaa agcacaaaat
     2401 atctgctcaa acattagcgg ctaatttttt gtaagcaata tacttgctgt ttatcgtgaa
     2461 aatgggctac acttaataga taattcaaaa aaaatggagg caagatgtaa tgacaaacgt
     2521 acttttcatc aaagcaaatg gtttacctgc cgaacgctca gtcagcgtgg cactatatga
     2581 aatctttcta acggaataca aaaagtccca tccggacgat aatgtaacag aacttgattt
     2641 atttgaagcg gatctacctt attatgatgt aacaatgatg agtggattac ataaagaagc
     2701 agctggagaa acactaagcc cagaagaaaa acgcttagct gatattgcta acagctactt
     2761 agatcaattt ttagctgcag acaaaatcgt catggcgttc ccactttgga acttcagtat
     2821 cccagcccaa tttttaacat acttattcta tttaaatcaa gctggcaaaa catttaaata
     2881 cactgcaaac ggccctgtag gtttagttgc tgataaaaaa attgccctgc ttaatgctcg
     2941 cggtggcatt tactctgacg gaccaatgca aagcttcgaa atgtccctga gctatgtaaa
     3001 aaatgtgtta gctcacttcg gtatctctga gccagaaatg gttatcgtag aaggtcataa
     3061 cgcaaaacct gatcaagcaa aagacattat ctctgcagga gcaaaagaag cagtagaatt
     3121 a
//
LOCUS       DASEAA010000238         3038 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.239, whole genome shotgun sequence.
ACCESSION   DASEAA010000238 DASEAA010000000
VERSION     DASEAA010000238.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3038)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3038)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3038
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.239"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(78..350)
                     /locus_tag="U0342_002829"
     CDS             complement(78..350)
                     /locus_tag="U0342_002829"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734882.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424156.1"
                     /translation="MLFDIDGIEYNTDDYEQYDMYKQSVVRNVMYKAYRSLRSVVSDN
                     KCQGLKQKEVKEKINNNRSQVYQLLSFTDEEINSIFIFIEKYFPRI"
     gene            complement(356..667)
                     /locus_tag="U0342_002830"
     CDS             complement(356..667)
                     /locus_tag="U0342_002830"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734881.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM2424157.1"
                     /translation="MHMTSKHYNLINTNQLMKFYKCKEWLSLRQEALKRDNYECQRCK
                     KKGKQRQADCVHHIKYVKEFPAFALTLSNLECLCNQCHNEEHERLPNQQEKKIINQER
                     W"
     gene            complement(1247..1672)
                     /locus_tag="U0342_002831"
     CDS             complement(1247..1672)
                     /locus_tag="U0342_002831"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014930909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF722 domain-containing protein"
                     /protein_id="HEM2424158.1"
                     /translation="MSKRLRKAQYKLIEDELRYYHSTKKEILEKRANIVMGSIHQEFK
                     DENQGGGSSGQISNEVEQRVMLLQVDKEIQRMSDIVRAIDTVLSTLSDEDKQLIHFRY
                     WDRSRPTWLWIACKLNISESTAKRKRKEIIYKIAARLGY"
     gene            complement(1685..1912)
                     /locus_tag="U0342_002832"
     CDS             complement(1685..1912)
                     /locus_tag="U0342_002832"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917713.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424159.1"
                     /translation="MEEYVNISLDKYERLKMFENDKYEKDAKEFLKKFTNFTTIFGNQ
                     NEEYYTAHVNKEELKKLIEQRLGKTCEIEFY"
     gene            complement(1974..2129)
                     /locus_tag="U0342_002833"
     CDS             complement(1974..2129)
                     /locus_tag="U0342_002833"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009930672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424160.1"
                     /translation="MFKTLSSFYFSMIFIIVLLRAFGFLSLAEAEFSLLLIISLVMVE
                     DMNGSRK"
     gene            complement(2130..2663)
                     /locus_tag="U0342_002834"
     CDS             complement(2130..2663)
                     /locus_tag="U0342_002834"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581464.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3310 domain-containing protein"
                     /protein_id="HEM2424161.1"
                     /translation="MKIYHTETQEDFDALLEELKNEWYSWFFGEVIPSYDSELWERYK
                     QDTVVHIEEDGVSWGSLSYAKYLHPNTPIEKYKAKQDEVAKWFGGVTKAMKAFSSNGV
                     SMKNENNDKVNNPAHYTAGGIETLDYIKAKVSDYSSYAVGNILKYVSRYEHKNGIEDL
                     KKAQFYLNNLIEWMESD"
BASE COUNT          905 a          628 c          425 g         1080 t
ORIGIN      
        1 acgttgcatt ttttggcgct actctcccac gttgtcacac cctctcaaaa agttttaaaa
       61 tttttacccg gggggtatta aatccgtgga aaatattttt caataaaaat aaaaatagaa
      121 tttatttctt catcagtaaa tgaaagcaac tgatacactt gcgacctatt attatttatt
      181 ttttctttca cttctttttg cttcaaacct tgacacttgt tatcagacac aacagaccgc
      241 agcgaacgat atgctttata catcacattg cgcactacac tttgcttata catatcatat
      301 tgttcatagt catctgtgtt gtactcaatt ccatcaatat caaataacaa tcacatcacc
      361 atctttcttg attaataatc ttcttctctt gttgattagg caaacgctca tgctcttcgt
      421 tatgacattg attacataaa cattcgagat tacttaatgt taacgcaaaa gcgggaaact
      481 cttttacata tttaatatga tgtacacagt ccgcttgacg ttgcttacct ttcttcttgc
      541 atcgttggca ttcatagtta tcacgcttca atgcctcttg cctgagagac aaccactctt
      601 tgcatttata aaacttcatc aactgattag tattgattaa gttataatgt ttagatgtca
      661 tatgcatatg tattacccct atataaaaag cccaacacta atgtgctgga cttcattgtt
      721 ctatgtatcc gtagttataa aaccaggcgg acttctacgg tagcattcgt caatgctttg
      781 tctttcttct aattaaccct cagacgggct cgcggacgtc agaaagcgga aattataaag
      841 ccttcccatc agaacatatc tgctattaaa tagagagaag gtattgtcgt ttaaatatac
      901 tcggcaagga tttgcacctt gcaacatcaa gccgaagcgt gatataggac tcatccataa
      961 cgtctacctg ttccgtcacg agtattgaga ttgaacaaga aggtgtctct tgttgggact
     1021 agtgagattg gaatgggatg cgtctcccat caagaccaac gatcagataa taagcctctg
     1081 tccggcaaca tagcaacctc ctgctatatc atcatcatgt gattatatat gagaagtgaa
     1141 gtgcagactt aatatattat tttattttgt aatcatcttc acttctctac tctataatat
     1201 taacatggaa aaacatgtca aacgggtcat aaacgggtca acttttttaa taacctaatc
     1261 gcgcggcaat tttatatata atctctttcc gttttctttt agccgtactt tcactgatat
     1321 tcaacttaca agcaatccac aaccaggtag gtctactcct atcccagtat ctaaaatgaa
     1381 tcagttgctt atcttcatca gacaaagtgc tcaataccgt atcaattgct ctgacaatat
     1441 cagacattct ttgtatttct ttatcgactt gtaatagcat aacacgttgt tctacttcat
     1501 ttgatatctg accagatgaa ccaccgcctt ggttttcgtc tttgaattct tgatgtatag
     1561 atcccatgac aatgtttgca cgtttttcta gtatttcttt ttttgtagaa tgatagtaac
     1621 gaagttcatc ttcaataagt ttatattgtg ctttacgtaa tcgttttgac atttaatcac
     1681 tctcctaata aaattctatc tcacacgttt tgcctagtct ttgttcaatt agttttttca
     1741 gttcttcctt gttgacatgc gccgtgtaat actcttcatt ttgatttcca aatatcgttg
     1801 tgaagttagt aaactttttt agaaattcct tagcatcttt ttcgtattta tcattttcaa
     1861 acatttttaa cctttcatat ttatctaaac tgatatttac atattcctcc attgtcaacc
     1921 agccccaatt tttttatatt ttagcaatac ttgtaaaggc gaagagtcac ttgtcattta
     1981 cgactcccat tcatatcctc aaccatgaca agagaaatga ttaatagtaa actaaattct
     2041 gcttctgcaa gactaagaaa gccgaaagcg cgcaataata cgataatgaa aatcatagaa
     2101 aaataaaatg aacttaatgt tttaaacatt caatcactct ccatccattc aatcaaatta
     2161 tttaaataaa attgcgcttt ttttaaatcc tcaatgccat tcttgtgctc gtatcttgag
     2221 acatatttaa gtatgtttcc tacagcatat gacgaataat cagatacttt tgccttgatg
     2281 tagtctagtg tttcaatacc acctgctgtg taatgtgcag gattatttac tttgtcgtta
     2341 ttttcatttt tcatagatac tccattggat gaaaatgctt tcatggcttt tgtaacgcca
     2401 ccgaaccact ttgcaacttc gtcttgtttc gctttgtatt tttcaattgg tgtgttgggg
     2461 tgtaaatatt tagcataaga aagactcccc caacttactc catcttcctc tatatgcaca
     2521 acagtatctt gcttataccg ttcccaaagt tccgagtcat atgacggaat aacctctccg
     2581 aaaaaccagc tataccattc atttttcaat tcttccaaca atgcatcaaa atcttcttgt
     2641 gtttctgtgt gatatatttt cattcgtttt tcctccttgt ttaattgtgt actcggcgaa
     2701 ttatgtgatt tagataagtg cggcattggg gcaaacaata tcaccaacaa aactccaaaa
     2761 aacactccag gtataaaagc aatactacct gctaccatta tcatatttcc tatctgcttg
     2821 atttccacat ataacaagaa atcttttcat caatgtcatc cctccatttt ccgccgacta
     2881 taccgttaca aaacccattt tgtaacacgt aaccactcaa atcccttctg acagaacgtg
     2941 gttacaggtt acaaaaaaat cggcgaaaaa gtttttattt ttgtactctt ttcttaaata
     3001 taaataaata tatatacttt ttattaataa aaaaatgt
//
LOCUS       DASEAA010000239         3027 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.240, whole genome shotgun sequence.
ACCESSION   DASEAA010000239 DASEAA010000000
VERSION     DASEAA010000239.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3027)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3027)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3027
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.240"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            44..3025
                     /locus_tag="U0342_002835"
     CDS             44..3025
                     /locus_tag="U0342_002835"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929359.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2424162.1"
                     /translation="MKSKTKQIIMIGVVLFQSLFAYPLITMAEENESKSVNTETTLEP
                     KVALEEKTPQKPTLTNNLKQEKTVLQAGETYETVFPDAALATVIAKAATGSEDITQEV
                     SQTDLNKITSLTATSKGIVDLTGIDLLSKLTSLSISGNQITDISALNGLVNLSNLNVS
                     NNKITSFNLNANSNLPMLSAVDIRSNNLKNINVQDQPKLWTFKCDTGSSSELTEVTLK
                     NLPTLIVAGNGSSAYQNDIVFSSTPGLSKVILENLPSISSSVRLDRCAIEELVINNLP
                     KVSMVNISNNKITTLEGLENLSAVNTLYVSENLVTEIESMHAFPKLQKLELGWNALTN
                     VVMDQVTAEKFPLLRTMNVRGNNLIKINIQDQPKLWTFECDTGSSSELTEVTLKNLPI
                     LIAVGNGSSAYQDDIVFSSTPGLSKVILENLPSTSSEVKLDHCAIEELVINNLPKVSV
                     VIISYNKITTLEGLENLSAVSKIDAYENLVTEIENLHAFPKLQTLTVDNNHISVLPTS
                     LKTENPVLTTLSAMNQTITLKQKVIVSDLVLDNEVKNFGQITTAKSISNKGTYQNNQI
                     KWLFEDIKSVNAVDYQFSEPVQEATIQGTFSGKVTQPIKASKVPVISADAEMNYPKNE
                     TVSEAAFFKDISASVTDDATLTSDFESVVDFAKAGTYEVTLNAVNEDGVKATSVTVLV
                     HIAKSPAPVITADKEITYTKNAEVSITEYLAAIHAKTNDGSPIESDFATAVNWGTAGD
                     YTVTLRSTNEDGVEAIPVEVTVHIAKSPAPVITADKEITYAKNAEVSITEFLAAIHAK
                     TSDGSPIESDFATAVIWSTAGDYTVTLKSTNEDGVEAIPVEVKVHIVEPLAPTISNVT
                     FDVDDVQTTESLEAGELISEPLSPTKEGYTFIGWYDSKTGGNKWDFTTDKMPAYNIIL
                     YAQFSKDTNKAEAAGGDKPSTPSSIKVSPTGQSESGNLENRSNIKLPATGDDNATVLL
                     VGFGLLMLGLFIRLTQKKRAK"
BASE COUNT         1099 a          530 c          593 g          805 t
ORIGIN      
        1 attattactg aagatgctaa caacaacgag aaggagatag attatgaaaa gcaaaacaaa
       61 acagattatc atgattggag tggtcctttt tcaatcactc ttcgcatacc cgttaatcac
      121 catggcggaa gaaaatgaat cgaaatcagt aaatacagaa accacgttag agcctaaagt
      181 agctctcgaa gaaaaaacgc ctcagaaacc tacccttacc aataatctga agcaagaaaa
      241 aactgtcctt caagcaggcg aaacatatga aactgttttt cctgatgcag ctttagctac
      301 tgtaattgca aaagcagcaa ctggttcaga ggatatcacg caagaagtat cgcaaacaga
      361 cttgaataaa atcacttcac taactgctac atctaaaggg atagttgatt taacaggaat
      421 agatttactt tcaaaattaa cctctttaag tataagcggg aaccaaatca ctgatatttc
      481 tgcactcaat ggtctcgtga atttgtccaa tctaaatgta tctaataata aaataacaag
      541 tttcaaccta aacgcgaata gtaatttacc tatgttaagc gctgttgata ttcgtagtaa
      601 taacttaaaa aatataaatg ttcaagacca acctaaatta tggaccttta agtgtgacac
      661 aggtagtagt tcagagttga cagaagttac gctaaaaaat cttccaactt taatagttgc
      721 aggtaatggc tctagtgctt atcaaaatga tattgttttt tctagtacac caggattaag
      781 taaggtgatt ctagaaaatt taccatcaat aagctcttca gtacgattag atcgttgcgc
      841 gatagaagag ttagtaatta ataaccttcc aaaagtatca atggtaaata taagtaacaa
      901 caaaattact acactagaag gacttgaaaa tttatctgca gtaaacactt tatacgtatc
      961 tgagaattta gtgactgaaa tagaaagtat gcatgccttc cctaaattac agaagttaga
     1021 gctgggatgg aatgcactta ctaatgtggt aatggatcaa gtaacagcgg aaaaattccc
     1081 gttattaaga acaatgaatg ttcgtggtaa taatttaatt aagataaata ttcaagacca
     1141 gccaaaatta tggacctttg agtgcgacac aggtagtagt tcagagttga cagaggttac
     1201 gttaaaaaat cttccaattt tgatagctgt aggtaatggc tctagcgctt atcaagatga
     1261 tattgttttt tcgagtacac caggattaag taaggtgatt ttagaaaatt taccatcaac
     1321 cagctctgag gtaaagttag atcattgcgc gatagaagag ttagtaatta ataacctgcc
     1381 aaaagtatca gtggtaatta taagttacaa caaaattact acactagaag gacttgaaaa
     1441 tttatccgca gtaagcaaaa ttgacgcgta cgagaattta gtgactgaaa tagagaacct
     1501 acatgcgttc cctaaattac agacactcac cgtagacaat aaccatatca gtgtattgcc
     1561 aacaagtttg aaaacggaaa atcccgtatt aacaacgcta agtgcgatga atcaaacaat
     1621 cactctaaag caaaaagtta tcgtgtcaga cctagttctt gataatgaag tgaagaattt
     1681 cggtcaaata accactgcca aatccatctc taataaggga acctatcaaa ataaccaaat
     1741 caagtggctt tttgaagata taaaaagcgt gaatgccgtt gattatcaat ttagtgaacc
     1801 tgttcaagag gcaactattc aaggaacttt ttcggggaaa gtgacacaac caatcaaagc
     1861 atctaaagta ccagttatta gcgcagatgc agagatgaat tacccgaaaa acgaaacggt
     1921 atcagaagct gcctttttca aagatatttc tgcaagcgta acggatgatg caacactaac
     1981 ttctgatttt gaaagtgttg tggactttgc aaaagcggga acgtatgaag tgacattaaa
     2041 tgcagtgaat gaggatggag taaaagcgac ttcggtgact gtattagtgc atatcgctaa
     2101 gtcgccagcg ccagtaatta ccgcagataa agaaatcaca tacactaaaa acgcggaagt
     2161 cagcatcacg gaatatcttg cagcgattca tgctaaaacg aatgatggtt caccaattga
     2221 aagtgatttc gctacggctg taaattgggg cactgcagga gattataccg taacgctaag
     2281 gtctacaaat gaagatggag ttgaagcaat ccctgtagaa gtaactgtgc acatcgccaa
     2341 gtcgccagcg ccagtaatta ccgcagataa agaaattacg tacgctaaaa acgcggaagt
     2401 cagcatcacg gaatttcttg cagcgattca tgctaaaacg agtgatggtt caccaattga
     2461 aagtgatttc gctacggctg taatatggag cactgcagga gattataccg taacgttaaa
     2521 atctacaaat gaagatggag tagaagcaat ccctgtagaa gtaaaggtgc atatcgtaga
     2581 gccactagca ccaacgattt cgaatgtgac atttgatgtg gatgatgtac aaacgacaga
     2641 atctcttgaa gctggagagc taatttctga accattgagc ccaacaaaag aaggctatac
     2701 ttttattggt tggtatgact cgaaaactgg tggtaataaa tgggatttta caacagataa
     2761 aatgccagca tataatatta ttctttatgc tcagtttagt aaagatacaa ataaagcaga
     2821 agcggccggt ggagataagc cctcaacacc ctcttctata aaagtaagtc caacaggtca
     2881 gtccgagagt ggaaacttgg aaaatagatc taatattaaa ttaccagcta caggcgatga
     2941 taatgcaact gttttattag tgggctttgg attactaatg ttggggcttt tcattcgcct
     3001 tactcaaaaa aagcgtgcta aataaaa
//
LOCUS       DASEAA010000240         3012 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.241, whole genome shotgun sequence.
ACCESSION   DASEAA010000240 DASEAA010000000
VERSION     DASEAA010000240.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3012)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3012)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3012
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.241"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            12..398
                     /locus_tag="U0342_002836"
     CDS             12..398
                     /locus_tag="U0342_002836"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464130.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424163.1"
                     /translation="MRFIIAYLSIFVLGIFSTLLVETILYDNVTPQLVFSAILFAAPV
                     ILVASTLGEIFYGFSKKASYFTFAIWGFAYGVVAAVIILSIIQVSGMLISVGVSILAG
                     VIMALLAIIFFFLRGGKSTSGKAATK"
     gene            complement(446..946)
                     /locus_tag="U0342_002837"
     CDS             complement(446..946)
                     /locus_tag="U0342_002837"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464129.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GNAT family N-acetyltransferase"
                     /protein_id="HEM2424164.1"
                     /translation="MNFHIRKATNSDAEAIQHVAITSWHHTYQDLIPGDVQDDFLERF
                     YNVETLHNRISATPFAVVEQADKVIGFANFIELEKGKSELAAFYLLPEVTQRGLGTEL
                     LEVGMTLFHVPLPMFVNVEKGNETAIHFYKAKGFVQVEEFTEDFYGYPLETIRFNLNH
                     HAFEEE"
     gene            complement(1052..2152)
                     /locus_tag="U0342_002838"
     CDS             complement(1052..2152)
                     /locus_tag="U0342_002838"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464128.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4097 domain-containing protein"
                     /protein_id="HEM2424165.1"
                     /translation="MRKHHLSKKLFFAGLVLFIIGAIGVALTMNKGNMIEKGEPLTKQ
                     WDLSAENINSIAFSSERDVTFEWKESTNGKNYIELKGNYSANDKKAIQKLDPVSEDGT
                     SFNITVPEEEDWYNGFGKIYAYGQQKVTVYLTKDTKLADLEVKSHSGDINVADFKVKK
                     FVSSTNSGELKVSNLEANTAQMATSSGDLELSNMKANSSVETGSGQTDLTNLTGDLEV
                     NGGSGDVNVTGVKAKKLKIAIDSGDIELTSGTVTDLAVLTTSSGDIDASTKGKVQAES
                     NSGAIELAGITNDVTAKTSSGDIDVAFIKQVKNIEINTDSGEVELDLPGDFKAIYEAS
                     SNSGSVKAPTSDSNTDNRVTVKTSSGDIKIEK"
     gene            complement(2145..2735)
                     /locus_tag="U0342_002839"
     CDS             complement(2145..2735)
                     /locus_tag="U0342_002839"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464127.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1700 domain-containing protein"
                     /protein_id="HEM2424166.1"
                     /translation="MNKQDFLNELNQRLELLDPKERRELLSDYQEHFRNGIEAGKSEE
                     QIVFDLGKPEEIAADIISERGIREEPAEMDYYYVPRKNQNENRSVSKQILIGVGLFFL
                     DICLIIPIMVSLWSLVISLWATVGGFLLSPVILGVGIIFGADFEFYQMFVSIGLVGLG
                     LMLLFVANALTQLTSKVTMAIIQWHKYAVKGGGKNA"
     gene            complement(2728..>3012)
                     /locus_tag="U0342_002840"
     CDS             complement(2728..>3012)
                     /locus_tag="U0342_002840"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464126.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PadR family transcriptional regulator"
                     /protein_id="HEM2424167.1"
                     /translation="LFLIQKKDCYGYELANQVSKYIEVAEGAIYPVLRRLVKEEYCST
                     YLVESNEGPSRKYYQLTVKGEIYLNELISEWNNFTDSVAKLLTEGDAVNE"
BASE COUNT          855 a          635 c          459 g         1063 t
ORIGIN      
        1 aggttttttt gatgcgtttt attattgctt atttatcgat ttttgtttta ggaatttttt
       61 ctacgctttt agtcgaaaca atcctctatg acaacgttac gccacagctt gtgttttcag
      121 cgatactttt tgcagctcct gtaattttag ttgcttctac gttaggcgaa attttttacg
      181 ggtttagcaa aaaagctagt tacttcacat ttgctatatg gggcttcgct tacggggttg
      241 ttgcagcagt catcatttta agtattatcc aagtttctgg tatgctcatt tctgttggcg
      301 tatccattct cgcaggagtt atcatggcgc tacttgccat catcttcttc tttttacgcg
      361 gtggaaaatc taccagtgga aaagccgcta cgaaataaaa aaatgtctat cctaattgat
      421 tcattcaact agaatagaca tttttttatt cttcttcaaa cgcatgatga ttcaaattaa
      481 aacgaattgt ctccagcgga taaccgtaaa aatcctcggt aaattcctcc acttgaacaa
      541 accctttcgc cttataaaaa tgaatcgctg tttcgtttcc tttttcgacg ttaacgaaca
      601 ttggtaatgg cacgtgaaat agagtcattc ctacttctaa aagttctgta ccaagtccgc
      661 gttgtgtcac ttctggtagt aaataaaatg ctgcgagttc gctcttcccc ttttcaagtt
      721 caataaaatt cgcaaatccg attactttgt ctgcttgttc cacaacagca aaaggagtcg
      781 ctgaaatacg attatgaagc gtctcaacgt tataaaacct ttccaaaaaa tcgtcttgta
      841 catcgcctgg aattaaatct tgataggtat gatgccacga agtaatcgct acatgctgaa
      901 tggcttcagc atccgaatta gttgctttcc taatatgaaa attcatcatc cattcccctt
      961 tcacttgcgc aaattgatga aacagtttat ctgactttac ccctttttaa caaaaagaat
     1021 gcgctaatta aataattagc gcactgattt tttatttttc gattttaata tctccggaac
     1081 ttgttttcac cgttactcgg ttatcggtat ttgaatcact cgttggtgct ttaacgctac
     1141 ctgaattact acttgcttca taaatagctt taaaatcacc cggtagatca agttcaactt
     1201 caccagaatc tgtattgatt tcgatgtttt ttacttgttt gataaaagct acatcgatat
     1261 cacctgagct tgtttttgct gttacatcat tcgttatgcc tgcaagttcg attgctcctg
     1321 agttggattc cgcttgtact ttaccttttg tacttgcatc aatgtctccg gaacttgttg
     1381 ttaacacagc taggtcagtt acagtgccac tagtcaactc aatgtctcct gaatcgatgg
     1441 caattttaag tttcttcgct ttaacacctg taacattcac atcgcctgaa ccaccattta
     1501 cttctaaatc acctgttaaa ttagtaaggt ccgtctgtcc agaaccagtt tcaactgagc
     1561 tatttgcttt catattcgat aattccaagt ccccagaaga agtagccatt tgagcagtat
     1621 ttgcttccaa attacttact tttaactcac ctgagttggt agaactaaca aatttcttta
     1681 ctttaaaatc agctacattg atatccccag aatgagattt cacttctaga tcagctaatt
     1741 tagtatcttt tgttaaataa acggttactt tttgttgacc gtatgcgtat attttgccaa
     1801 agccgttata ccaatcctct tcttcaggaa ctgtaatatt aaaggacgtt ccatcttccg
     1861 aaactggatc taatttttga atggcttttt tatcattagc agagtaatta ccttttagtt
     1921 cgatgtaatt ttttccattt gtactttctt tccattcaaa cgttacgtcg cgctcggaag
     1981 aaaaagcaat ggagttaata ttttcagctg ataagtccca ctgttttgta agtggttcac
     2041 ctttttctat catattacct ttgttcatcg ttaatgctac accgatagca ccgataataa
     2101 atagtaccaa accagcgaaa aataattttt tacttaagtg atgtttacgc attttttccg
     2161 cctcccttta ccgcatattt atgccactgg ataatcgcca ttgttacttt acttgtaagc
     2221 tgagttagcg cgtttgctac aaataaaagc attagcccca aacctacaag gccaatagaa
     2281 acaaacattt gataaaattc gaaatcagca ccaaaaataa ttcctacgcc aagtataact
     2341 ggtgataaaa ggaacccacc aaccgtcgcc caaagtgaga taaccaagga ccatagcgaa
     2401 accataattg gaatgataag acaaatatct aagaaaaata atccgacacc tattaaaatt
     2461 tgtttactca cagatctatt ttcattttga ttttttcgcg ggacataata ataatccatt
     2521 tctgccggtt cttcacgaat accacgttcg ctgattatat ccgcggcaat ttcttctggc
     2581 ttgccaaggt caaaaacgat ttgctcctcg cttttccctg cttcaatccc atttctaaaa
     2641 tgctcctgat agtccgatag taactctctc cgttctttcg gatcaagcaa ttccagtcgt
     2701 tggtttaatt cattgagaaa atcttgttta ttcatttact gcatccccct ctgttaatag
     2761 ctttgccaca ctgtctgtaa aattattcca ttcagaaata agttcattca agtaaatttc
     2821 tccttttact gtcaactgat aatattttct tgatggacct tcatttgatt ctactaaata
     2881 ggtagaacaa tattcttctt ttactaatct tctaagtact ggataaatag caccttcagc
     2941 tacttcaata tatttagaca cttgatttgc taattcataa ccgtaacaat ctttcttttg
     3001 aattaaaaat aa
//
LOCUS       DASEAA010000241         3005 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.242, whole genome shotgun sequence.
ACCESSION   DASEAA010000241 DASEAA010000000
VERSION     DASEAA010000241.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 3005)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 3005)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..3005
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.242"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..2387
                     /gene="addA"
                     /locus_tag="U0342_002841"
     CDS             <1..2387
                     /gene="addA"
                     /locus_tag="U0342_002841"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929779.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helicase-exonuclease AddAB subunit AddA"
                     /protein_id="HEM2424168.1"
                     /translation="QSIYRFRLAEPTLFMTKYQTYQQDGNGSGIRIDLSQNFRSRKEV
                     LDATNFIFHQLMDKHIAEIDYDAAAELTLGASFPETTDMATELLLIDMKSVESETEDE
                     LSPQELQKNQVESRAIAMKIKEMIDNKFPIFDKKMKQNRPIQYRDIVILARAMTSAPD
                     MEEAMKVQDIPFYANNNSGYFETTEVATMIALMKVIDNPYQDIPLAAVLRSPIIGLNE
                     EELGQVRMAKKNGYFYDALLTYKDTTVSETADKMSDFIQQLNNWRELSIRENLTSLIW
                     QIYQETNFYEFVGGLPGGKQRQANLRALYDRANQYEKTSFRGLFRFVRFVERLEVRGD
                     DLGTAKTLGEKEDVVRMMTIHASKGLEFPVVIVSGLSRKFNMRDIYSKTLLDKDYGFA
                     SNYRDIEKMIVYPTIMQQAMKQKKSREMIAEEMRVLYVALTRAEEKLILTATVPDFEK
                     TSKNWLQVAKEKETILPASTRAKAKCYLDWIGNATIRHPNFKELLCEEMIQTLPTDMK
                     LQIEIKTKEMFLTNELEKTETVNWLDNIKEHQPIPVKSPYKDEIQRYMNYEYQNEEAT
                     EIRAKQSVTELKRQFSLQDSWSDTTLLKEFQKVSLDRPKFLQQNKLSATEIGTAMHTL
                     MQAVSLEHQPTKEDLEQLLQTMREKDILTEAQLKAINIKQVLGFFESQLGKTMLQKKD
                     LVKREVPFSYLLPVSELYEKVDIDERVLIQGVVDSMIEEEETITLIDYKTDKIEGRYS
                     NWEAAEKIMKERYHIQIKLYAKAIQAISGKKVDAAYLYFFDGQHICQINTKEGF"
     gene            2388..>3005
                     /locus_tag="U0342_002842"
     CDS             2388..>3005
                     /locus_tag="U0342_002842"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fumarylacetoacetate hydrolase family protein"
                     /protein_id="HEM2424169.1"
                     /translation="MKWLSYQHEGDFNYGILTPENKIIPAQTIFSNPPATLLDFIKEK
                     PLVPELKGIKGDIDLAEVEIQVPITPPNNIIAIGKNYYNHVLEMGSKEDVPEHILVFT
                     KSANSLLPHNGKIELHQNLTSQLDYEGELAIIIGEKVRDLSEQDALSAIFGFTILNDV
                     TARDLQKKHKQFYLGKSLDASCPMGPYVLENNGSKEVVFHIETKVN"
BASE COUNT         1120 a          459 c          588 g          838 t
ORIGIN      
        1 agcagtctat ttatcggttc cgtttagcag aaccaacgct atttatgacg aaatatcaaa
       61 cttaccaaca agatggaaat ggaagcggaa tacgtattga tttgtcgcaa aactttagaa
      121 gtagaaaaga agttttagat gcgactaatt ttatatttca tcaattgatg gacaagcaca
      181 ttgctgaaat tgactatgat gcagcggcgg aattaacttt aggcgcaagt tttcctgaaa
      241 cgactgatat ggcgacggaa ctactgctaa ttgatatgaa gtctgtggag agtgaaactg
      301 aagatgaatt gtcacctcaa gaattacaaa aaaatcaagt ggaatcacgt gcaattgcaa
      361 tgaaaattaa agaaatgata gacaataagt ttcctatatt tgataaaaaa atgaaacaaa
      421 acagaccgat tcaatatcga gatatagtta ttttagctag ggcgatgaca agcgctccag
      481 atatggaaga agcaatgaaa gttcaggata tcccttttta cgcgaataac aattctggtt
      541 attttgaaac aacagaagta gctacgatga ttgcactgat gaaagtgatt gacaaccctt
      601 accaagatat tccgctcgct gctgttttac ggtcacccat aatcggttta aacgaagaag
      661 agctaggaca agttcgtatg gcgaaaaaga atggttattt ctatgatgca ttgttaacat
      721 acaaagatac aaccgtttcg gaaactgcag ataaaatgag tgattttatt caacagttaa
      781 ataattggcg tgagttatct atccgggaaa acttaacatc attaatttgg caaatctatc
      841 aagaaactaa tttttatgaa tttgttggtg gattaccggg tggcaaacaa cgccaggcta
      901 atttacgtgc gttatatgac cgagctaatc aatacgaaaa aacatctttt cgtgggttgt
      961 ttcgctttgt ccgttttgtc gaacgcttag aagttcgagg cgatgattta ggaaccgcaa
     1021 aaacacttgg tgaaaaagaa gatgtcgttc gtatgatgac aatccatgca agtaaaggat
     1081 tagaatttcc agtggtcatt gtctctgggt taagcaggaa atttaatatg cgtgatattt
     1141 atagcaaaac acttttagat aaggattacg gttttgcatc taattatcga gatatagaga
     1201 aaatgattgt ttatccaaca attatgcagc aagcaatgaa acaaaaaaaa tctcgagaaa
     1261 tgatcgcgga agagatgcga gttctttacg ttgctcttac tcgtgcagaa gagaagttaa
     1321 ttttgacagc aacggtgcct gattttgaaa aaacaagtaa gaattggtta caagttgcaa
     1381 aagaaaaaga gactatttta cctgcatcca caagagctaa agcgaaatgt tatttggatt
     1441 ggataggaaa cgccacaatt agacatccta attttaaaga attattgtgt gaggaaatga
     1501 tccaaacgct tccgacagat atgaaactac agattgaaat aaaaaccaag gaaatgtttc
     1561 taactaatga attggaaaag acagaaacgg ttaattggtt ggacaatata aaagaacatc
     1621 aaccaatacc tgtcaaaagc ccttataagg atgaaattca gcgatatatg aactatgagt
     1681 accaaaatga agaggcaaca gaaattcgtg ctaaacagtc ggtaacagag ctcaagcggc
     1741 aattttcttt gcaagatagt tggagtgata ctacactttt aaaagaattt caaaaagttt
     1801 cattagacag acccaaattt ttacagcaaa ataaattatc tgcaacagaa attggcacgg
     1861 caatgcatac gctaatgcaa gcagtttctt tagaacatca accgacaaag gaagatttgg
     1921 aacagctttt acaaacaatg cgtgaaaagg atatactaac agaagcacaa cttaaagcaa
     1981 tcaatattaa acaagtgcta ggcttttttg aatcgcaatt aggaaaaact atgttgcaga
     2041 aaaaagattt agtaaaacgt gaagtgccat ttagttattt acttcctgta tctgagttat
     2101 acgaaaaagt tgatatagac gaacgtgtac ttatccaagg tgttgtagat agcatgattg
     2161 aagaagaaga aacaattact ttgattgact ataaaacaga taaaatagag ggtaggtatt
     2221 ctaattggga agctgctgaa aaaataatga aagaacgata tcatattcaa atcaaacttt
     2281 atgcaaaagc gattcaagcg ataagtggta aaaaagttga tgcagcttat ttatatttct
     2341 tcgatggaca acatatatgt caaataaaca caaaggaagg tttttaaatg aaatggttga
     2401 gttatcagca tgagggcgat tttaattatg gcattttaac acctgaaaat aaaattatcc
     2461 ctgcacaaac aattttttcg aatccacctg ctactctttt agactttatc aaagaaaagc
     2521 cgcttgtccc tgaactaaaa ggaatcaaag gggatattga tttagctgaa gtagaaatcc
     2581 aagttcctat caccccacca aataatatta ttgcaattgg gaaaaattat tataatcatg
     2641 tgctagagat ggggagcaaa gaagacgttc cagaacatat ccttgtattt acaaaaagtg
     2701 ctaatagttt attgccgcat aatggcaaaa ttgagctaca tcaaaaccta actagtcaat
     2761 tagattatga aggcgaactc gcaataatta taggagaaaa ggtaagagat ttatccgagc
     2821 aagatgcatt atccgccata tttggattta ctattttaaa tgatgtaaca gctcgggatc
     2881 ttcagaaaaa acataaacaa ttttaccttg ggaaaagtct tgatgccagt tgtccaatgg
     2941 gaccttatgt gctggaaaac aatggaagta aagaagttgt ttttcatatt gaaactaagg
     3001 ttaac
//
LOCUS       DASEAA010000242         2979 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.243, whole genome shotgun sequence.
ACCESSION   DASEAA010000242 DASEAA010000000
VERSION     DASEAA010000242.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2979)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2979)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2979
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.243"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            62..>2979
                     /locus_tag="U0342_002843"
     CDS             62..>2979
                     /locus_tag="U0342_002843"
                     /EC_number="6.4.1.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464597.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="pyruvate carboxylase"
                     /protein_id="HEM2424170.1"
                     /translation="MNRIKKVLVANRGEIAIRVMRACTELKIKTVAIYSQEDTGSFHR
                     YKSDEAYLVGAGKKPIDAYLDIENIIEIAKESGADAIHPGYGFLSENIEFARRCEQEG
                     IIFVGPKSKHLDMFGDKIKAKEQALLADIPVIPGSNGPVAGIKEVEEFGEKNGYPLMI
                     KASLGGGGRGMRVVESKEHVKESFERASSEAKAAFGNDEVYVEKCVMNPKHIEVQILG
                     DTHGNIVHLFERDCSIQRRHQKVVEVAPCNAITSELRNRICDAAVKLMKNVDYINAGT
                     VEFLVEGDDFYFIEVNPRVQVEHTITEMITGIDIVQSQLFIADGYALHDQLVAIPKQE
                     DIHIHGSAIQSRITTEDPLNNFMPDTGRVDTYRSTGGFGVRLDAGNGFQGTVVTPFYD
                     SLLVKLCTWGMTFEQATRKMRRNLIEFRIRGVKTNIPFLLNVVRHPDFASGNYNTSFI
                     DTTPELFKFPHIRDRGTKTLRYIGNVTVNGFPGIKHRDKPVYAEPRLPKIPYGSQISP
                     GTKQILDAKGPEGVVDWVKKQEEVLLTDTTLRDAHQSLLATRVRSKDIFQIADAMAHL
                     LPNMFSFEMWGGATFDVAYRFLNEDPWVRLETLRKQIPNVMFQMLLRGANAVGYKNYP
                     DNVIREFVKQSAQSGVDVFRVFDSLNWIKGMEVSIDAVREAGKIVEAAICYTGDIDDD
                     TRTKYTIDYYKDMAKELVAQGTHILGIKDMAGLLKPQAAYRLIGELKDTVDVPIHLHT
                     HDTSGNGIYTYAAAVSAGVDIVDVASSAMSGATSQPSMTGLYYGLVNGNRQTNLDAQN
                     SQIINHYWEDVRHYYKDFDNALNSPQTEVYIHEMPGGQYTNLQQQAIAVGLGDRWDEV
                     KEMYTVVNQMFGDIVKVTPSSKVVGDLALFMVQNELSEEDVYEKGDTIDFPDSVIEFF
                     MGEIGQPYGGFPEKLQKLVLKGRTPLTDRPGALMEPVNFVEVKAELKEKMGYEPTEKD
                     V"
BASE COUNT          966 a          545 c          651 g          817 t
ORIGIN      
        1 tcaaccgttg gaggctatgt ataaagtata gaacagatca gtgttggtta ggaggaaaaa
       61 aatgaatcga attaaaaaag tattagtagc aaaccgcgga gaaattgcta tccgtgttat
      121 gcgtgcgtgt actgaactca aaatcaaaac agtggctatt tattcacaag aagataccgg
      181 aagttttcac cggtataaat cagatgaagc ttatctggtt ggagcaggga aaaagcctat
      241 tgatgcgtat ctagatatcg aaaacataat agagattgct aaagaatctg gtgcagacgc
      301 gattcatccg ggatatggtt tcttgtccga aaacattgaa tttgctcgtc gttgtgagca
      361 agaaggcatt attttcgttg gtcctaaatc aaaacaccta gatatgtttg gtgataaaat
      421 caaagcaaaa gaacaagctc tattagctga tattccagta attccgggaa gtaatggacc
      481 cgtggctggt attaaagaag tagaagaatt tggtgagaaa aacggttacc cattaatgat
      541 taaagcttct cttggaggcg gcggtcgtgg tatgcgtgtc gtagaatcaa aagaacatgt
      601 caaagaaagc tttgaacgtg catcctcaga agcaaaagcg gcatttggga acgatgaagt
      661 atacgtagaa aaatgcgtga tgaatccgaa acatatcgaa gtacaaattc ttggtgacac
      721 ccatggcaac atcgttcatt tatttgaacg tgattgttct atccaacgtc gtcatcaaaa
      781 agtagtagag gtagcgccat gtaatgcgat tacttctgaa ctacgtaacc gtatctgtga
      841 tgctgcagta aaattaatga aaaatgttga ttacattaat gctggaacag ttgaattttt
      901 agtggaaggc gatgatttct actttatcga agtaaatcct cgtgtccaag tggagcatac
      961 aattactgaa atgattacag ggattgatat tgttcaatca caactattca ttgcagatgg
     1021 ttacgcgctt cacgaccaac tagtagctat tcctaagcaa gaggatatcc atattcacgg
     1081 ttctgctatt caaagccgta ttacaacgga agatccactt aataacttta tgccagatac
     1141 tggtcgagta gatacgtatc gctctacagg tgggtttgga gttcggttgg atgctggtaa
     1201 cggcttccaa ggaacagtag taacaccatt ttatgattcc ttacttgtaa aattatgtac
     1261 ttggggaatg acattcgaac aagcaacgcg caaaatgcgt cgtaacttaa ttgaattccg
     1321 tatccgtggt gtcaaaacga acattccttt cttattaaat gttgttcgtc atccggattt
     1381 tgcaagtggt aattataata caagctttat tgatacaaca ccggaactat ttaaattccc
     1441 acatattcgc gaccgtggta caaaaacgtt gcgttatatt ggtaatgtaa cggttaatgg
     1501 tttcccagga attaagcacc gtgataaacc tgtatatgca gaaccacgct tgccaaaaat
     1561 tccgtatggt tcgcaaatct ctccaggtac aaaacaaatt ttggatgcaa aaggtccaga
     1621 aggcgttgta gactgggtga aaaaacaaga agaagtgctc ttaacagaca ctacacttcg
     1681 ggatgcgcac caatctttac ttgcaacacg tgttcgctcg aaagacattt tccaaatagc
     1741 agatgcgatg gctcatttat taccaaacat gttttccttt gaaatgtggg gtggcgcgac
     1801 ttttgacgtg gcatatcgtt tcctaaatga agatccttgg gtgcgcctag agacacttag
     1861 aaaacaaatt ccaaacgtga tgttccaaat gttacttcgc ggagctaatg cagttgggta
     1921 taaaaactat cctgacaatg ttatccgtga attcgttaag caatcagcac aatccggtgt
     1981 ggatgtattc cgcgtgtttg acagcttaaa ctggatcaaa ggcatggaag tgtccattga
     2041 tgctgttcgt gaagcaggga agatcgtaga ggctgctatc tgctatacag gagatatcga
     2101 tgatgacaca agaacgaaat ataccataga ttactataaa gatatggcga aagagctcgt
     2161 tgctcaaggc acgcatatcc taggaatcaa agatatggct gggcttttaa aaccacaagc
     2221 ggcataccgt ttgattggcg aattaaaaga tacagtagat gttccaatcc accttcacac
     2281 gcatgacaca agcggcaacg gtatttatac ttacgcagca gctgtcagtg ctggcgttga
     2341 cattgtggac gtggcatcaa gcgcaatgag tggggctaca agccaaccaa gtatgactgg
     2401 tctttattac ggattagtga atggtaatcg tcaaacgaat ttagacgctc aaaattccca
     2461 aatcattaat cattactggg aagatgttcg tcactattac aaagactttg acaatgcact
     2521 taattcacct caaacagaag tatacattca tgaaatgcca ggtggtcaat atactaacct
     2581 tcaacaacaa gccattgcag ttggacttgg cgatcgttgg gacgaagtga aagaaatgta
     2641 tacagtggtt aatcaaatgt ttggtgatat cgttaaagta acaccttctt ccaaagttgt
     2701 tggagactta gcactattta tggttcaaaa tgaattatcc gaagaagatg tatacgaaaa
     2761 aggcgatacc attgatttcc cagattccgt tatcgaattc tttatggggg aaattggtca
     2821 accatacggc ggcttcccag aaaaacttca aaaactagta ctcaaaggac gtacaccact
     2881 tacagatcgt ccaggcgctt taatggaacc agttaacttt gttgaagtca aagcagaatt
     2941 aaaagaaaaa atgggttatg aaccaactga aaaagatgt
//
LOCUS       DASEAA010000243         2926 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.244, whole genome shotgun sequence.
ACCESSION   DASEAA010000243 DASEAA010000000
VERSION     DASEAA010000243.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2926)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2926)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2926
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.244"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..461)
                     /locus_tag="U0342_002844"
     CDS             complement(<1..461)
                     /locus_tag="U0342_002844"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466374.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ASCH domain-containing protein"
                     /protein_id="HEM2424171.1"
                     /translation="MAIYKDSVHEMWEKYRTEYPMISSKFEAWAFGNSNQMANELGGL
                     VMDGIKTGTSSLFYWYDQGGETMPSVGSHVVLLDGNEEAMGIIKLTGVTIMPFNEVPE
                     TFAYLEGEGDRTLEYWREVHTSFFSNECVELGIPFEEDALVVCEEFEVVYK"
     gene            complement(516..1136)
                     /locus_tag="U0342_002845"
     CDS             complement(516..1136)
                     /locus_tag="U0342_002845"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466375.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="protein jag"
                     /protein_id="HEM2424172.1"
                     /translation="MRDITAQGSNVEEAIQNALATLETTRDKVEVEVLDEGKKGIFGI
                     GSRLAMVKVIEKEDGIQVAIDYLLDVATKMGAVITIDVEEVGKDVKLQIKGDSLGMLI
                     GKHGQTLNALQYLTQLIANKTTSQYKNIIVNVGDYRERRHETLVILANKMADKALKTK
                     RAVHLEPMPSFERKIIHAILSENEQIETHSEGRDPYRYIVIKPVRK"
     gene            complement(1133..1996)
                     /gene="yidC"
                     /locus_tag="U0342_002846"
     CDS             complement(1133..1996)
                     /gene="yidC"
                     /locus_tag="U0342_002846"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="membrane protein insertase YidC"
                     /protein_id="HEM2424173.1"
                     /translation="MKKKKRFKQKLLIASLVIGLMAVLSGCGYSTDPITSESTGFWSH
                     YIVFPLSWTITWFSDLFGGSYAVGIIVVTILIRLLIMPLMIKQLKSQKAMTNLQPKIK
                     ELQEKYSSKDNETKQKLQQETMRLYQENSVNPMMGCLPLLIQMPILLGFYQAISRTAE
                     IKTDSFLWMQLGNPDPYYILPVVAALTTFLSSKISMMGQTQQNKSMAMIVYIMPVMIL
                     FMGITLPSALALYWIIGNIFTVFQTLLINNPFKNKREQEALAAAQVAEDRLKKKAANM
                     KASKKGGKKRK"
     gene            complement(2037..2396)
                     /gene="rnpA"
                     /locus_tag="U0342_002847"
     CDS             complement(2037..2396)
                     /gene="rnpA"
                     /locus_tag="U0342_002847"
                     /EC_number="3.1.26.5"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466377.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ribonuclease P protein component"
                     /protein_id="HEM2424174.1"
                     /translation="MKKKYRIKKNDDFQKVFRRGKSFANRQFVVYTLKQEGSNHFRIG
                     LSVSKKIGNAVCRNRIKRYIRQSFHELESQINPENEYIIIARKPAANMDFHEVKKSLI
                     HVLKVGRVLKQKPNNSK"
     gene            complement(2486..2620)
                     /gene="rpmH"
                     /locus_tag="U0342_002848"
     CDS             complement(2486..2620)
                     /gene="rpmH"
                     /locus_tag="U0342_002848"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003397591.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L34"
                     /protein_id="HEM2424175.1"
                     /translation="MKRTYQPSKRKRKKVHGFRTRMSTKNGRRVLASRRRKGRKVLSA
                     "
     gene            complement(2788..>2926)
                     /locus_tag="U0342_002849"
     CDS             complement(2788..>2926)
                     /locus_tag="U0342_002849"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424176.1"
                     /translation="KEKLIFEYPAEFEKIGEFAKYLVEVSGREITIPDTTREKYIYLT
                     Q"
BASE COUNT          840 a          597 c          440 g         1049 t
ORIGIN      
        1 tatttataaa caacctcaaa ctcttcacaa accactagag catcttcttc aaatggaata
       61 ccgagttcca cacattcatt actgaaaaag gatgtatgta cttctcgcca atattctagc
      121 gttctgtcac cttctccttc caaataagca aacgtttcag gtacttcatt aaaaggcata
      181 atagttacac ctgttaactt gataatcccc attgcttctt cattaccatc taaaagcact
      241 acatgagaac caacagacgg catcgtttct ccgccttgat cataccaata aaacaagctg
      301 ctcgtgccgg tttttatccc atccataaca agcccaccaa gctcattcgc catctgatta
      361 gagttaccaa atgcccatgc ctcaaactta cttgaaatca tcgggtattc tgtccggtat
      421 ttctcccaca tttcatgcac tgaatcctta taaatcgcca tttaagtatc ctcctaaaaa
      481 aagactgagg ttcgttaaaa cctcagtcta agaatttatt tgcgaactgg cttaatcaca
      541 atataacggt aaggatcgcg tccttcagaa tgcgtttcaa tttgttcatt ctcgcttaaa
      601 atagcatgaa taatttttct ttcaaatgaa ggcattggtt ctaaatgaac agcgcgcttc
      661 gttttaagag ctttatctgc cattttattt gctaaaatta ctaacgtttc atgacgtctt
      721 tcacgataat cccctacatt aacaataata tttttgtatt ggctcgttgt tttattagca
      781 attaattgtg ttaagtattg aagtgcatta agggtttgac cgtgtttgcc aattagcata
      841 cctagactgt cacctttaat ttgcaacttc acatctttac caacttcttc tacatcgatt
      901 gtgattactg cacccatctt ggtagcaaca tctaaaagat aatcaatcgc tacttggata
      961 ccatcttctt tttcaattac ttttaccata gccagtcttg aaccaattcc gaaaatacct
     1021 tttttacctt catctagaac ttctacttcg accttgtcgc gtgttgtttc taaagtggct
     1081 aatgcatttt ggatagcttc ttcaacgttt gagccttgcg cagttatatc tctcactttc
     1141 ttttcttacc tccttttttg gaagccttca tgttagctgc ttttttcttc aaacgatctt
     1201 ccgcaacttg agcagcagca agcgcctcct gttcgcgttt gtttttaaaa ggattattaa
     1261 ttaaaagtgt ttggaatacg gtgaaaatgt taccgataat ccagtataga gcaagggcag
     1321 acggtagtgt aatacccata aatagaatca ttacaggcat gatataaaca atcattgcca
     1381 ttgatttatt ttgctgtgtt tgccccatca tagaaatttt tgatgacaag aatgttgtta
     1441 atgccgcaac aaccggtaag atgtaatatg gatctggatt tcccagttgc atccataaga
     1501 atgaatctgt tttgatttct gctgttctac taatcgcttg gtaaaaacct agtagaatag
     1561 gcatttggat taataatggt aaacaaccca tcattggatt tacgctattt tcttgatata
     1621 gacgcattgt ttcttgttgt agtttttgtt ttgtttcatt atctttagac gagtatttct
     1681 cttgtagttc tttgattttc ggttgtaaat tggtcatggc cttttggctt ttcagctgtt
     1741 tgatcattaa aggcatgata agtagacgga ttaaaatggt aacaacaata attccgactg
     1801 cgtaacttcc cccgaataaa tcggaaaacc aagtaatagt ccaggacaat ggaaatacaa
     1861 tatagtgact ccaaaatcca gttgattctg atgtaattgg atcagttgaa tagccacaac
     1921 ccgaaagtac agccattaat ccgattacaa gacttgcgat gagcaacttc tgtttgaatc
     1981 gctttttctt cttcaaattg atgtaacctc caatttcgcc tttttaaaat ttccactcac
     2041 tttgaattgt ttggtttttg ctttaaaaca cgccccactt ttaaaacatg aatcaaactt
     2101 ttctttacct catgaaaatc catattggcc gccggttttc tggcgatgat aatatattca
     2161 ttttcaggat tgatttggct ttctaattca tggaatgatt gtcttatgta acgtttaatt
     2221 cgatttcgac agacagcgtt tccaattttt ttactaactg ataaaccaat tcgaaaatga
     2281 ttcgatcctt cttgctttaa agtataaaca acaaattgac ggttagcaaa agattttcct
     2341 cttcggaata ctttttgaaa atcgtcattt tttttaattc tatatttttt tttcatacat
     2401 tctccatctt cttacatatc ttagtataag gccgtttgcc tcagcgattt ttcaaaaaaa
     2461 aaaccactga gtcgttttca gtggtctacg cagataaaac ttttcttcct ttacgacgac
     2521 gacttgctaa aactctacgt ccgtttttag tactcatacg cgtacggaaa ccatgcactt
     2581 tttttctttt acgtttactt ggttgatatg ttcttttcat taattacacc tcccatgaaa
     2641 gggtccaatc gaatttatct attagacagt cttagatatt gtacgtgaac tggtcttttt
     2701 tgtcaatact atttagacga atttctattt agactccgtt cactatcata tcatattttt
     2761 atagagagaa aaaccatttt tcgaaaatta ttgtgtcaaa tagatatatt tttctctcgt
     2821 agtgtctgga atagtaattt cccgaccaga aacctctact aaatatttag caaactcccc
     2881 gattttctca aattcagcag gatattcaaa aattagtttt tccttt
//
LOCUS       DASEAA010000244         2679 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.245, whole genome shotgun sequence.
ACCESSION   DASEAA010000244 DASEAA010000000
VERSION     DASEAA010000244.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2679)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2679)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2679
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.245"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            1..1872
                     /locus_tag="U0342_002850"
                     /pseudo
     CDS             1..1872
                     /locus_tag="U0342_002850"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929206.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="MucBP domain-containing protein"
     gene            1995..>2679
                     /locus_tag="U0342_002851"
     CDS             1995..>2679
                     /locus_tag="U0342_002851"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464766.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1254 domain-containing protein"
                     /protein_id="HEM2424177.1"
                     /translation="MKKMLPESKVEAIRKEGFLNRAVEAYRFFYPTVSNVSNFKALND
                     LGITENHDFIIQLTTPDLNVLTQNSDTPYCLGTGNTENGPVVIELPQGAIVGVADDIN
                     FKFITNMGLTGDEQGKGAKYLYLPPNYDGDIPEGYIVRKPSSYRFLICLRAMVHQASD
                     YEKAFELLKKVKFYPLEEKDNNPTSTFHDFSHRKAISTPYYVEGKFDYWEVIKWALDN
                     DETDPEYYQM"
BASE COUNT         1043 a          432 c          499 g          705 t
ORIGIN      
        1 tactttaaat attgatttaa actccgtcag tgttttacca agtaacctta aaacaaagat
       61 gccaaaacta tcgagaatta gtgcattaaa tcaaacagtt actttagata aagcaattgt
      121 agtggatgat tccgatttaa ttattaataa tgagattagt aattttggaa agttaaccga
      181 tccaagccca atatcaaatt ttggaactta cgcaaatgaa aaaataactt ggtcgtctga
      241 aagaattaaa aatttaacag aggttagttt taagttttct gagctaatta atgtgactgg
      301 tatagatgga actttttcag gaaaagtaac acaaccattt aaaaaatcaa ctacaccagt
      361 aattaatgca gattccgaaa ttcattatcc gcaagggaca aaaaaacaga agcagagttt
      421 ttaaaggata ttcaagcgca aacaacggat gatttatcca ttaaaagcga ttttgaaata
      481 atggtgaatc tcaagaaagt aggaaaatac acagtaatat taaacgtaga gaatatggat
      541 ggaattaaag ctaatccaaa agaagtgact gtttatattg atgctgtaca aggtgcaaat
      601 ataactgtga aatatgaaga caaatcaggg aataaacttg cagaaaatag catattaact
      661 ggaaatgtcg gtgaagaata tagttcaagt gaaaaagaaa ttttaggtta tacactaact
      721 gaaattccaa caaatgcaca aggagaattt agtttagaag aacagactgt gacatatatc
      781 tattcgaaaa atcccgttcc agctaaagac atcacggtac aatataccga taaagatgga
      841 atagaactag caccaaccga aacattatca ggtaatgttg atgaaaatta tgttacaaca
      901 gcgaagaatt ttacaggata cgaattaatt gaaactccga gcaatgcaga aggaaagttt
      961 agcgaaaatg cacaaacagt gacctatgtg tatcgcgcga ttaaagcaga tccaatttta
     1021 gcaaaagaag ttacggtgaa ctaccaggac gaattaggag ctaaaattag tgaaacggaa
     1081 gtattaactg gtgaaattgg tgaaacatac acaacagtgg ctaaaacaat agatggctat
     1141 accttaatta agagccctat taacgctagc gggattttta acgaaaatcc tcaaacggtt
     1201 acctatgtgt atcaattaca aaacaaccca ataacagcaa atatcactgt taaacacttg
     1261 gatgaaaaca acaatgagct agcaccgagt gaggtactaa gtggaattgt cgatgaagca
     1321 tatacaacta atccaaaaga aataaaagac tattcgctag taaaagtacc aactaatgct
     1381 agcggaaaat tcacgacaga agcacaaacg gtgatttatc actataaaaa aaacagtata
     1441 cagacatcat cttatattac tgtaaaatat gtagatgaaa cagggaaaga gctggccata
     1501 agcgaggtat taaacggaaa cattaatgat tcctacgcaa ctacagctaa ggaaattaaa
     1561 ggctacacgc tagtggaaaa gcccgctaat gcaactggta aatttacaga tcaggatcaa
     1621 actataaaat atgtatatcg tgctaataca gatgaagtaa atctagaccc agatgtacca
     1681 gcgagaaatc ccaatggaga tattcaacca atgaatggtg cccaaccacc aattgaggtt
     1741 ccaaaatccc tgcctaaaac aggtagccag ccggcaaatt tgatctttgg attaggagtt
     1801 ttactagtgt ttcttagtac ccaatggcta catcgagata aaagaaaaaa agataaatct
     1861 cataactgct gataacattt cttgacaaaa ctctccttat cctaaggaga gttttttact
     1921 ttacgcttga acattcaaaa acaagggtat tagttaagtg ttctaaaaaa agctaattga
     1981 aggaggtttt ttacatgaaa aaaatgctac ctgagagtaa agtagaggca attagaaaag
     2041 aaggattttt aaatcgagct gttgaggcat atcgattttt ctatccaact gtgtccaatg
     2101 tgtctaattt taaagcattg aatgacttag ggattacaga aaatcacgat ttcattattc
     2161 aactcacaac gcctgattta aatgtattga cgcaaaactc agatacacca tattgccttg
     2221 gaacgggaaa caccgagaat ggtccagttg ttatcgagtt gccacaaggc gctatcgttg
     2281 gtgtggctga cgatattaat tttaaattta ttacgaatat gggattaaca ggggacgagc
     2341 aagggaaagg cgcgaaatat ttgtacttac cacctaatta tgatggggat atcccagaag
     2401 gctacatagt acgcaaacct tcaagctatc gtttcctcat ttgtttacga gcgatggttc
     2461 accaagcaag tgattatgaa aaagcatttg aactcctgaa aaaagtgaaa ttctatccat
     2521 tagaagaaaa agataataat ccaaccagta cattccatga tttttcgcat cgaaaagcga
     2581 tttcgacacc atattatgtc gaaggaaaat ttgactattg ggaagtaatt aaatgggcgc
     2641 tggataatga tgaaacagat ccagaatatt accaaatgt
//
LOCUS       DASEAA010000245         2648 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.246, whole genome shotgun sequence.
ACCESSION   DASEAA010000245 DASEAA010000000
VERSION     DASEAA010000245.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2648
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.246"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..171
                     /locus_tag="U0342_002852"
     CDS             <1..171
                     /locus_tag="U0342_002852"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725056.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424178.1"
                     /translation="ASWNKLYSAAQQSTAASNQANIYLSVSADINIVGVGSVDVNTGL
                     DGIIYLTKEVTT"
     gene            168..509
                     /locus_tag="U0342_002853"
     CDS             168..509
                     /locus_tag="U0342_002853"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424179.1"
                     /translation="MSELIKVFKYDDNGVFERDDLIILKKGEKIPDGYTLIEPPVPAI
                     NPVFNTKKQKWSPGEEASIPEPPELTELEKLTQDYADLMLYVAEVEQKTEQTQQDNAN
                     LLLSLAEAGAL"
     gene            509..655
                     /locus_tag="U0342_002854"
     CDS             509..655
                     /locus_tag="U0342_002854"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HEM2424180.1"
                     /translation="MINWYEKVKDYFLGGYYTEADVNKFVTLKKITRSQADEIIAMKE
                     AKAE"
     gene            692..1057
                     /locus_tag="U0342_002855"
     CDS             692..1057
                     /locus_tag="U0342_002855"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465804.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424181.1"
                     /translation="MYEGLTKVFDYALAKEMFFAALFVALFIILLIITKRIWDDSKIV
                     RVEMKEERDKMETEREKRDKESKEERDKFISTMNEQQRLMDKQNDMMGQQQQSIDSLS
                     KSVGKLAHKVDLLEHKITK"
     gene            1070..1351
                     /locus_tag="U0342_002856"
     CDS             1070..1351
                     /locus_tag="U0342_002856"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="holin"
                     /protein_id="HEM2424182.1"
                     /translation="MEFGKELLVYMTFLVVVTPVFVQAIKKTELIPSKWLPTVSIFVG
                     AILGALATFLDGSGSLATMIWAGALAGAGGTGLFEQFTNRAKKYGKDDK"
     gene            1351..2220
                     /locus_tag="U0342_002857"
     CDS             1351..2220
                     /locus_tag="U0342_002857"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003740832.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase family
                     protein"
                     /protein_id="HEM2424183.1"
                     /translation="MALTEAWLIEKANRKLNAGGMYKITSDKTRNVIKKMAKEGIYLC
                     VAQGYRSTAEQNALYAQGRTKPGAIVTNSKGGQSNHNYGVAVDLCLYTNDGKDVIWES
                     TTSRWKKVVAAMKAEGFKWGGDWKSFKDYPHFELCDAVSGEKIPTATQNTNTNSNRYE
                     GKVIDSAPLLPKMDFKSSPFRMYKVGTEFLVYDHNQYWYKTYIDDKLYYMYKSFCDVV
                     AKKDAKGRIKVRIKSAKDLRIPIWNNTKLNSGKIKWYAPNVKLAWYNYRRGYLELWYP
                     SDGWYYTANYFLK"
     gene            2344..>2648
                     /locus_tag="U0342_002858"
     CDS             2344..>2648
                     /locus_tag="U0342_002858"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725050.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424184.1"
                     /translation="MFITIDVENILEKVGIGSTNPFKVKASDGKIYVIKIKNDACDGK
                     TLLNELIAYRLAKLLDLPISNCCLINLKKEHIEDNIFNMDGINCVEGIGFASEYMQG"
BASE COUNT          959 a          380 c          589 g          720 t
ORIGIN      
        1 gcgagctgga ataaacttta ttccgctgca cagcagagta cggcagcaag taatcaagcg
       61 aatatatatc taagtgtgag cgctgatata aatatcgttg gagttggttc ggtagacgtg
      121 aacaccggac ttgatggcat aatttattta actaaagagg tgacaacatg agcgagttaa
      181 taaaagtttt taaatatgat gacaacggcg tatttgagcg tgacgactta attattttaa
      241 aaaaagggga gaagattccg gatggctata cactaattga accaccagta ccagcaatta
      301 atccggtttt taatacgaaa aagcaaaaat ggagtcctgg tgaagaagca agcattcctg
      361 aaccgccaga attgaccgag cttgaaaaat taacacaaga ttatgcggac ttaatgcttt
      421 atgtagcaga agtcgaacag aagacggaac aaacgcaaca agataatgca aacttactat
      481 tatctttggc ggaggcaggt gctttgtaat gattaattgg tatgaaaaag tgaaagatta
      541 ttttttaggc ggctactata ctgaagcaga tgttaataaa ttcgttactc taaaaaagat
      601 aacgagatca caagcagatg aaataatcgc tatgaaagaa gcaaaagccg aataggctta
      661 ttttttatgt tgaaaatagg ggatggttgg gatgtatgaa ggcttaacga aagtatttga
      721 ttatgcttta gcaaaagaaa tgtttttcgc ggcgctattt gtcgcactgt ttattatttt
      781 gttgattatt actaaaagaa tctgggatga ctcaaaaata gtaagagtag aaatgaaaga
      841 agagcgggac aaaatggaaa cagagcggga gaagcgggat aaagaatcga aagaagaacg
      901 agataagttt attagtacga tgaacgaaca acagcgttta atggacaagc aaaatgacat
      961 gatggggcaa cagcaacagt caattgatag tttgtcaaaa tcggtcggta aattagcaca
     1021 taaggtagat ttactagaac acaaaattac aaaataaagg atgataaaaa tggaatttgg
     1081 aaaagagtta ctagtttata tgacattttt agtagttgta acgcctgttt ttgtgcaagc
     1141 aattaaaaaa acagagctaa ttccttcgaa atggcttcca acagtaagta tttttgttgg
     1201 ggccatttta ggggccttag cgacattttt agatggttct ggatcgcttg caacaatgat
     1261 ttgggcaggt gcattagcag gagctggcgg aaccggtttg ttcgaacaat ttactaatcg
     1321 agctaaaaaa tatggaaagg atgataaata atggcattaa cagaggcatg gctaattgaa
     1381 aaagcaaatc gcaaattgaa tgctggggga atgtataaaa ttacatcgga taaaacacga
     1441 aatgtaatta aaaaaatggc aaaagaaggt atttatcttt gtgttgcgca aggttaccgc
     1501 tcaacagcgg aacaaaatgc gctatatgca caagggagaa ccaaacctgg agcaattgtt
     1561 actaattcca aaggcgggca atctaatcac aactacgggg tagctgttga cttgtgcttg
     1621 tatacaaatg acggaaaaga tgttatttgg gagtcaacaa cttcccggtg gaaaaaggtt
     1681 gttgctgcta tgaaagcaga agggtttaaa tggggcggag actggaaaag ttttaaagac
     1741 tatccgcatt ttgaactatg tgatgctgta agtggtgaga aaatccctac tgcaacacaa
     1801 aacactaata caaattcaaa tcgttacgag ggtaaagtca ttgatagcgc accactgcta
     1861 ccgaaaatgg actttaaatc atcaccattc cgcatgtata aggtaggaac tgagttctta
     1921 gtatatgatc ataatcaata ttggtacaag acatacattg atgataaact ttactacatg
     1981 tataaaagct tttgcgatgt tgtagctaaa aaagacgcaa aaggtcgcat caaagttcga
     2041 attaaaagcg cgaaagacct tcggattcca atttggaata acacaaaact taacagcggg
     2101 aaaattaaat ggtatgcacc caatgtaaaa ctagcgtggt acaactatcg aagaggatat
     2161 ttagagcttt ggtatccgtc agacggctgg tactacacag ctaactactt cttgaaataa
     2221 aactattgcc ctcgcttttg cgggggtttt tggtcgagta gacacatcaa caaacatctg
     2281 ttccaattga tattgattgt aataagaggt tataatgaca taaaaacgtt ttattgggag
     2341 cgggtgttta ttacgattga cgtagaaaat atattagaga aagttggaat tggtagtaca
     2401 aatcccttta aagttaaagc ctccgatggt aaaatttatg taataaaaat taagaatgat
     2461 gcttgtgacg gaaaaacttt gttaaacgaa ctaatagcat ataggttagc taagcttcta
     2521 gatttaccaa tatcaaattg ttgtttgata aatttgaaaa aagaacatat tgaggataat
     2581 attttcaata tggatggtat taattgtgtg gaaggaattg gcttcgcaag cgaatatatg
     2641 caaggtaa
//
LOCUS       DASEAA010000246         2617 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.247, whole genome shotgun sequence.
ACCESSION   DASEAA010000246 DASEAA010000000
VERSION     DASEAA010000246.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2617
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.247"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..276)
                     /locus_tag="U0342_002859"
     CDS             complement(<1..276)
                     /locus_tag="U0342_002859"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464150.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3116 family protein"
                     /protein_id="HEM2424185.1"
                     /translation="MDEPTKAVIYQILSKTEEQNATMDHLVFEMMQFPGAAAFTKNEL
                     LFGIYWLETYHYIFRMNENQKTRYYRTEKGHEKLAELELLKKNSKKTT"
     gene            complement(293..571)
                     /locus_tag="U0342_002860"
     CDS             complement(293..571)
                     /locus_tag="U0342_002860"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464149.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424186.1"
                     /translation="MKKSWPDFAAFLLTILTVTWIILTWGLHISDIVPGGEKGVWYKL
                     IPLFLGIISTISVFFVKEKLVKWILLGFNILLLILIYFVYHIGEIGMF"
     gene            complement(657..1397)
                     /locus_tag="U0342_002861"
     CDS             complement(657..1397)
                     /locus_tag="U0342_002861"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464148.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sulfite exporter TauE/SafE family protein"
                     /protein_id="HEM2424187.1"
                     /translation="MDIITYFLIALSTSVVGSFLGIGGGVILLPILLLMGVSQGTAAF
                     SSALTVFTMAIFTCSIYYKRKQGNVGLALKIAVTSIPTTFLGAMVNQMLPEAVYRFLY
                     GALIVVLLGIMIWKKKRHNEKPHFLSEYRIIPYVFGVIIGFLAGLFGIGGGPIVIPIL
                     LLIFMLNQKTASATSSYVTLLTSLASIGSYAIIGGSDFSIGIYMIPGAIIGALIGTRL
                     NKLLDEKWIAILFNVLLIALFALNLIKI"
     gene            complement(1494..1886)
                     /locus_tag="U0342_002862"
     CDS             complement(1494..1886)
                     /locus_tag="U0342_002862"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464147.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1398 family protein"
                     /protein_id="HEM2424188.1"
                     /translation="MINEQTILQAATSEKNAGDFPKVVQSFKELGVTKYQFLVEKGIY
                     VFWDEMDNQVESKLNGVSMPISEEISRDRLKDAIKQAQAGKIDFEIFIKLAGLAGVRL
                     WEADLSAMKVTYIDNTGNDLIVEPIPSI"
     gene            complement(1942..2397)
                     /locus_tag="U0342_002863"
     CDS             complement(1942..2397)
                     /locus_tag="U0342_002863"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464146.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424189.1"
                     /translation="MDGEKETSKLLHELKKATNLRQVLDENEAEFKSSEMVTYLKELL
                     AEKKLTKASVIRAARLHETYGYQIFSGVRRPSRDRTIALSFGFKLTGLEASRLLKYTE
                     YPPLYAKNRRDAIIIFALDHGYTLDQTNDSLYDLEEALIETYKEEKPLI"
     gene            2504..>2617
                     /locus_tag="U0342_002864"
     CDS             2504..>2617
                     /locus_tag="U0342_002864"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEM2424190.1"
                     /translation="MGEMTLAFIEEQYKELDNLNNKENPAVLTRNTSTGELF"
BASE COUNT          836 a          529 c          371 g          881 t
ORIGIN      
        1 agttgttttt ttactattct tttttaaaag ttctagctct gctaattttt cgtgcccttt
       61 ttctgttcgg taatatctcg tcttttgatt ttcattcatt cgaaaaatat aatgatacgt
      121 ttctagccaa taaatgccaa acagcaattc attcttagta aaagccgcgg caccagggaa
      181 ttgcatcatt tcgaaaacca aatgatccat cgtcgcattt tgttcttctg ttttagataa
      241 aatttgatag atcactgctt tggttggctc atccattcta tcaatccccc tattaaaaca
      301 tcccaatttc cccaatatgg tacacaaaat aaattaaaat tagtaataat atgttaaaac
      361 ctagcagaat ccattttact agtttttctt tcacaaaaaa gacacttatt gttgaaatta
      421 ttcctaaaaa gagtggaatt aatttatacc aaacgccttt ttctcctcct ggtacaatgt
      481 cagaaatatg taatccccat gttaatatta tccaagttac agttaggatt gtcagtaaaa
      541 atgcagcaaa atctggccaa ctttttttca tcttaaaccc tcctactctc tctaagctta
      601 acataaaaca agccatgaca acaaaaaaac aagctacatt catagcttgt ccgaggttaa
      661 atcttaatta aatttaaagc aaaaagggcg ataagtaaaa cattgaatag aatcgcaatc
      721 catttttcat ccaggagttt atttaatctt gtgccaatta gcgcaccgat gattgcccct
      781 ggtatcatgt aaataccaat cgaaaagtca cttccaccaa tgattgcata ggaaccgata
      841 cttgcaaggg acgtcagtaa tgtcacataa ctggatgtcg cggatgccgt tttttgattc
      901 aacatgaaaa ttaacagcaa aattggtata acgattggcc cgccaccaat accaaataag
      961 ccagctaaaa aaccgataat tacaccgaat acatatggaa ttatccgata ttcacttaaa
     1021 aaatgtggtt tttcattatg ccgtttcttt ttccaaatca ttatccctag taaaacaacg
     1081 attaatgctc cgtacaaaaa gcgataaact gcttctggca acatttgatt caccattgcg
     1141 ccaagaaaag tcgtcgggat actagttacg gcaattttca gtgccaagcc tacattccct
     1201 tgctttctct tgtaataaat actacaagtg aaaatcgcca tcgtgaacac agtaagagcc
     1261 gaactaaatg ctgctgttcc ttgagaaaca cccattaaga gtagaattgg caaaagaata
     1321 actccgccac ctattcctaa aaaactccct accacacttg tacttagtgc aattagaaag
     1381 tacgtaatta tatccattat actttacctc tcttctttca actgtttcag cataacatat
     1441 ttccaaaatt taaaagtact aaaaaaagac aataagttat tgtcttttgc attttaaata
     1501 ctcggaatcg gttccacgat caaatcattt cccgtattat ctatataggt tactttcatt
     1561 gcagataaat cagcttccca cagtctgaca cctgctagcc cagctagttt aataaatatt
     1621 tcaaaatcta tttttcccgc ttgtgcttgt ttaattgcat ctttcagtct gtcgcgtgaa
     1681 atttcttcgg agattggcat agaaactcca tttaacttgg attctacttg attatccatt
     1741 tcatcccaaa atacataaat acctttttcg actaaaaatt gatatttagt tacgcctaat
     1801 tctttaaaac tttgaactac tttaggaaaa tctccggcgt ttttttcact tgttgctgct
     1861 tgtaaaattg tttgttcatt aatcataact agtctccaat catttaggtc tccctaaatt
     1921 atacacgatt tctagttaaa gctaaataag tggtttttct tctttatatg tttcgattaa
     1981 tgcttcctct aaatcataga gtgaatcatt cgtttggtct agcgtataac catgatctaa
     2041 cgcaaaaata ataatcgcat cccgccgatt ttttgcataa agaggtggat attctgtata
     2101 ttttaataat ctacttgctt ctaaaccagt taatttaaat ccaaaagaaa gagcgatcgt
     2161 ccggtcgcgt gacggtcttc taacgccact gaaaatttgg tatccatatg tttcatggag
     2221 tctcgccgca cgaatgacgc ttgcttttgt taattttttc tctgctaata attcttttaa
     2281 ataggtaacc atttcgcttg atttaaattc cgcctcgttt tcatctaata cttggcgtaa
     2341 attggtcgct ttttttaatt catgaagtaa cttacttgtc tctttttccc catccataag
     2401 gcacaccccc gactgttttt ttcattatag cacgaaatat gtacccgact actatgcttc
     2461 atgctataat tttactataa agtatagaag gggttttaga taaatgggag aaatgacact
     2521 cgcttttata gaagaacaat acaaagaatt agataatcta aataataaag aaaaccctgc
     2581 tgtgctaacg agaaatacat ctactggaga attattt
//
LOCUS       DASEAA010000247         2615 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.248, whole genome shotgun sequence.
ACCESSION   DASEAA010000247 DASEAA010000000
VERSION     DASEAA010000247.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2615)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2615)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2615
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.248"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(163..1131)
                     /locus_tag="U0342_002865"
     CDS             complement(163..1131)
                     /locus_tag="U0342_002865"
                     /EC_number="2.7.1.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464864.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ROK family glucokinase"
                     /protein_id="HEM2424191.1"
                     /translation="MNKKLIGVDLGGTTAKLAILTKEGDIEEKWTIDTNIEDKGAHIV
                     KNIGDSINQKLTDLQLDNDIFYGIGMGTPGTVNYETGTVKGAYNLGWADEQNVSQDLE
                     NITGLKIILDNDANVAALGERWKGAGEGGANVVFVTLGTGVGGGIFAEGKILHGIRGA
                     AGEIGHVTVVPENGYDCTCGKKGCLETVASATGIVRVAKDLAKEYTGKSALKDAINND
                     ETITSKLIFELGAEDDALANETIDKISFYLALALSHIGNMLNPEKIIIGGGVSAAGDQ
                     LLTPVKTYFETMVFPAVKESTKLSIATKGNDAGIIGAAWLALPSED"
     gene            complement(1156..1368)
                     /locus_tag="U0342_002866"
     CDS             complement(1156..1368)
                     /locus_tag="U0342_002866"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YqgQ family protein"
                     /protein_id="HEM2424192.1"
                     /translation="MKTVYDVAQLLRKHGIIVYLGKRQYDIEMMEYEITELFKHNILD
                     RETFARARSILKQELIKEQRKNSSLN"
     gene            complement(1381..2544)
                     /locus_tag="U0342_002867"
     CDS             complement(1381..2544)
                     /locus_tag="U0342_002867"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_007474357.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEM2424193.1"
                     /translation="MRDHLDTLVKTLELPEEAFVLPNEITKELVAKEREQVIAYITTK
                     VNEEQKVARNSKPIVTYTFIGLLVVAFLWLSFQGGTTNSFNLIKWGGKFNPLIYAGEW
                     WRFISPIFLHSGLMHLASNAVMLYIVGAWAERIYGKWRYVLILLLGGICGNIASFALN
                     MNLSVGASTAVFAVMGALLYLVVLKPNLYAKTIGVSIASLVAINLLIDVFSSQIDIAG
                     HIGGLVGGFLLAGALSLPKQFFHWRRLAYGISLFGVAVLFLYFGYQKGEQPYDPMQAN
                     VAVQQYLQEQNKKEATKITDNLISSGSADGYSYTYAASIALQDKQIDKAETMAKEAIN
                     IDKDIPEAHYYLSVCYRVKGDMPNAIKEANSARELSSNPFFDSYYDELEKIKE"
BASE COUNT          794 a          537 c          375 g          909 t
ORIGIN      
        1 acatttgatt ttttcatctc tggcctccaa tctctctatg ctaaaatttt acccttttca
       61 aaggaagcta aaacaatgcg ttatagaaag attagcttta taaaacaagc tacaataatg
      121 gagtgttatt gtagcttata caaattaaaa ttaatattaa tattaatctt cacttggtag
      181 tgctaaccat gcagctccaa ttatccctgc gtcattccct tttgtcgcaa tagataattt
      241 agtggattct ttaacagctg ggaaaaccat tgtctcaaaa taagttttaa ccggtgttaa
      301 taattgatcg cctgctgctg aaacgccacc accaataata atcttctctg gatttaacat
      361 gtttccaata tgactgagcg ctaaagccaa atagaaagaa attttatcaa ttgtttcatt
      421 tgctaaagca tcatcttctg ctcctagttc aaaaatcaat ttagaagtaa ttgtttcatc
      481 gttgtttatt gcatctttaa gtgcggattt accagtatac tctttcgcta aatctttcgc
      541 tactcgaacg attcctgttg ctgatgcgac agtttctaaa cagccttttt tgccacaggt
      601 acaatcataa ccattctcag gaactactgt tacatgccca atttcaccag ctgctccgcg
      661 aataccatgt aaaattttgc cttctgcgaa aattccgccg ccaacgcctg ttccaagtgt
      721 tacgaaaacg acattagccc caccttcgcc tgcgcctttc cagcgttcac caagagctgc
      781 aacattagca tcattatcta atatgatttt taaaccagta atattttcta aatcttgact
      841 aacattttgt tcatctgccc agcctaagtt gtacgcacct tttacagtac ctgtttcata
      901 atttacagta cctggagttc ccataccaat accataaaaa atatcattat ccagttgtaa
      961 gtccgttaat ttttgattga tagaatcccc aatgttttta acaatgtggg cgcccttatc
     1021 ttcaatattt gtatcaattg tccatttttc ttcaatgtcg ccttcttttg ttaaaatagc
     1081 taattttgct gttgtcccgc ctaaatctac accaattaat tttttgttca ttctgctgtt
     1141 ctccttataa tcaatttaat ttaaactact attttttcgt tgttctttaa ttaattcttg
     1201 tttcaatata cttctagctc tagcaaaagt ttctctatct aaaatattat gtttaaaaag
     1261 ttctgttatc tcatattcca tcatttcgat gtcatattgt cgttttccta aataaacaat
     1321 aatgccatgc tttcttagta attgggcaac atcataaact gttttcacat taaaaacctc
     1381 ttattctttg attttttcta actcatcgta ataagaatca aaaaatggat tgcttgataa
     1441 ctctctagcg ctgttcgctt ctttaattgc atttggcata tcgcctttta ctctatagca
     1501 aacagataaa taataatgag cttctgggat gtctttgtcg atattaattg cttctttagc
     1561 cattgtttct gctttgtcta tttgcttatc ttgtaaagcg atagatgcag catacgtata
     1621 tgaatagccg tcagcacttc cgctagaaat taaattatcg gtaatcttgg ttgcttcttt
     1681 tttattttgt tcttgaaggt attgttgtac tgctacatta gcctgcatcg gatcatatgg
     1741 ttgttctcct ttttggtagc caaaatacaa aaataaaaca gctacaccaa aaagtgaaat
     1801 gccatatgca agtcgtcgcc aatggaaaaa ttgttttggt aacgataatg ctccggcaag
     1861 caagaaacca cctacaagac caccaatatg tccagcaata tcaatctgac tagaaaatac
     1921 atcaattaac aaattaattg cgacaagtga cgcgatactg acgccaattg tttttgcata
     1981 aagatttggt tttaaaacaa ccaaataaag taacgcgccc attactgcaa atactgcagt
     2041 acttgcacca acagataaat tcatatttaa tgcaaaactg gctatgtttc cgcatattcc
     2101 tcctaagaga agaattagaa catatcgcca tttaccataa atacgctctg cccaagcacc
     2161 tacaatataa agcataactg cattggaagc taaatgcatt aatccactat gaagaaaaat
     2221 cggtgaaata aagcgccacc attccccagc atatataagt gggttgaatt tcccgcccca
     2281 tttaattaag ttaaatgaat tggtagttcc accttggaaa gaaagccaca aaaacgctac
     2341 aaccaaaaga ccaatgaacg tatacgtaac tattggtttt gaattcctag caactttttg
     2401 ttcttcattt actttagtag taatatacgc gattacttgc tctcgttctt ttgctactag
     2461 ctctttcgtt atttcatttg gaagaacaaa tgcttcttct ggtaattcta aagttttaac
     2521 gagtgtgtct agatgatctc tcatttgttc gttcgcgagt aaaatatttt ctaatttcac
     2581 tttttcattt ggagaagcaa ttgactgccc aaaaa
//
LOCUS       DASEAA010000248         2548 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.249, whole genome shotgun sequence.
ACCESSION   DASEAA010000248 DASEAA010000000
VERSION     DASEAA010000248.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2548)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2548)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2548
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.249"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..288
                     /locus_tag="U0342_002868"
     CDS             <1..288
                     /locus_tag="U0342_002868"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003739595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2424194.1"
                     /translation="LQDNHIEESYHLESLREQAVKIQIAFENKKIPPFLLENGKVINK
                     YGRVYTILFRDMNTELYAAIKKEKPIFMDELAVTLEDLFIYHLEELGGEKS"
     gene            285..1349
                     /locus_tag="U0342_002869"
     CDS             285..1349
                     /locus_tag="U0342_002869"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465763.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424195.1"
                     /translation="MSAGLLWKEWRQNAWVFIFILIAFIGSEATTATNAVSMFNDNYN
                     YYQSEEFQKNNTADQQMTGNEIKNDLSLTPYDFEGNLGLFFYVFLFLGLKLTVFEKNK
                     QMDYFTFGLPYSKKQIFWHKMLIPLLLIFVLVPIIIFCRFWYIYQQIPGLYLPSVSDS
                     LMYISSFLLLYLFSYTLAVAVGNLVGEIITAGIIAIGSIVSFLYMFPGALTNLIIGFK
                     AFFTGKTIVDIDGGAVMLYNAIPTPILQGTTALSEFVILIILSIGMLTISWYAMKTAS
                     LENDGRFLMNNKFRVPILIIGSLYVTICLSGHYASFNYDQLIPTGQVISLIIKIILIL
                     VASVIAFWMLMYKWKTLRKH"
     gene            complement(1388..>2548)
                     /locus_tag="U0342_002870"
     CDS             complement(1388..>2548)
                     /locus_tag="U0342_002870"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465762.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2424196.1"
                     /translation="GLYMNYFVHGMALIIIAQNIDFLSQKWHTDLAGAAGVVSSFGIG
                     KLLAVFISGRLSDKFGRKLSVILGVFFYIIFLGGILLSPNTIIAYMFGISAGIANSFL
                     DTGTYPALMEAYPKKAASANIIVKAFVQSGQFLLPFMIAFILANNLWYGWSFIVLIVI
                     LLINLLYTLTRTFPPMTVGKPLDAAELAEEKKQKFHFSIDEICLILFGFVAQTLLYIM
                     SQWIAKYGSEVIHMTDDASRLLVSYASVGAIICVCVTFILGNRGVRTLHILITYVTMT
                     MLISFTLFAFPSEIVCIVGAFLLGYFSAGGIIQLGLTLLAEVSARGKGFVTSLYTIAE
                     GIAVFIIPLIAAAISRIDIAAIFLLNAGIALFGLALLMIVFTRKKKFARDHI"
BASE COUNT          875 a          423 c          466 g          784 t
ORIGIN      
        1 ttacaagata atcatattga agagtcttac catcttgaat cacttcggga acaagctgtt
       61 aaaattcaga tcgcttttga aaataaaaaa attccacctt ttttactgga aaatggcaaa
      121 gtaattaata agtatggccg tgtttacacc attttattcc gagatatgaa cacagaatta
      181 tacgcagcaa taaaaaaaga aaaaccaatt ttcatggatg aactcgcagt cacattagaa
      241 gacttgttta tttatcatct agaagaacta ggaggcgaga aatcatgagt gcagggcttc
      301 tttggaaaga atggcgtcag aatgcgtggg tatttatatt tattttaatc gcttttatag
      361 gttctgaagc tacgactgca acgaacgcgg ttagtatgtt taatgacaac tataactatt
      421 atcagtctga agaatttcaa aaaaataata cagcagatca acaaatgacg ggtaatgaaa
      481 taaaaaatga tttaagttta actccttatg attttgaagg gaatttaggg cttttcttct
      541 atgtgtttct gtttttaggg ttaaagttaa ctgtttttga gaaaaataag caaatggatt
      601 attttacttt tggattgcca tactccaaga agcaaatttt ttggcataag atgcttattc
      661 cattactttt aattttcgta ctagtaccaa tcatcatttt ctgtaggttt tggtatattt
      721 accagcaaat accggggttg tatttaccca gtgtgagcga ttctttgatg tatattagtt
      781 cctttttgtt attgtattta ttttcttaca cgttagcagt ggcagtcggg aatttggttg
      841 gagagataat tacagccgga attatagcga ttggatctat tgttagcttt ttatacatgt
      901 ttccaggcgc attgactaat ttaatcattg gttttaaagc tttctttact ggaaaaacaa
      961 tagtggatat tgatggtgga gcagttatgc tgtataacgc aatacctacg ccaattttac
     1021 aaggaactac agcgttaagt gaatttgtca tattaattat cttatcaata ggaatgttaa
     1081 ccattagctg gtatgcgatg aaaacagctt ctttggaaaa cgatggtaga tttttaatga
     1141 ataataaatt ccgggtccct atacttatca ttggttctct ttatgtgact atttgtttaa
     1201 gtggccatta tgcaagtttt aattacgatc aattaattcc gacgggacaa gttataagtt
     1261 taataattaa aattatactg attttagttg catctgttat tgctttttgg atgctcatgt
     1321 acaaatggaa gacgttacgg aaacattaaa aaagaccgag aattgaggaa tcaattctcg
     1381 gtctttttta aatatgatct cgagcaaatt ttttctttct tgtaaataca atcattaaga
     1441 gagcgaggcc gaaaagcgca ataccagcat ttagtaagaa gatagcggca atatcaattc
     1501 gggaaatcgc agcagcaatc aaggggataa tgaaaacagc tatcccttct gcaatagtat
     1561 aaaggctagt gacaaaaccc tttcctcgag cagaaacctc cgcaagtagt gttaaaccta
     1621 attggataat tcctccagca gagaaatagc ccaataagaa agccccaaca atacatacga
     1681 tttcgcttgg gaaagcaaac agtgtaaagg agatgagcat cgtcatggtt acataagtaa
     1741 ttaagatatg gagcgttcgc acgccgcgat ttcctaaaat aaacgtcaca cacacacaaa
     1801 taatcgctcc gacactagca taacttacaa gtagtctaga agcatcgtct gtcatatgaa
     1861 taacttctga accatactta gcgatccatt ggctcataat ataaagaagc gtttgggcca
     1921 caaaaccaaa taaaatcaaa caaatttcat ctatactaaa atgaaacttt tgctttttct
     1981 cttcggcaag ttctgctgca tctagtggtt ttccaacagt catcggcggg aaagttcgcg
     2041 ttaatgtata gagtaagtta attagtaaaa taacgatcaa tacaataaag ctccagccat
     2101 accataagtt atttgctaaa ataaatgcaa tcatgaatgg taaaaggaat tgaccagatt
     2161 gaacgaaagc tttaacaatg atattagcag aagcagcttt ttttggataa gcttccataa
     2221 gggcggggta ggttcctgta tctaagaagg aatttgctat cccagcagaa ataccaaaca
     2281 tgtatgcgat aatcgtattg ggactgagta atataccgcc taaaaagata atatagaaaa
     2341 acacgccgag aataacagac aactttctac cgaatttatc ggatagtctt cccgaaataa
     2401 atacagctaa taatttacca atcccaaagg aagatacaac gccggcagca ccagccaaat
     2461 ctgtatgcca tttttgagat aaaaaatcaa tattttgtgc aatgatgatt aacgccatac
     2521 catgaacaaa gtagttcata taaagacc
//
LOCUS       DASEAA010000249         2547 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.250, whole genome shotgun sequence.
ACCESSION   DASEAA010000249 DASEAA010000000
VERSION     DASEAA010000249.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2547)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2547)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2547
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.250"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            521..811
                     /locus_tag="U0342_002871"
     CDS             521..811
                     /locus_tag="U0342_002871"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424197.1"
                     /translation="MNKNHKKNTILNSLKGLTTTFSSKHKSEQVPLYYVTLLNCDECV
                     FQTEVFTSFKKAKACFYVKKQDILSKTTIENIYEQEQYFINTFSFVLKLGKN"
     gene            1392..2087
                     /locus_tag="U0342_002872"
     CDS             1392..2087
                     /locus_tag="U0342_002872"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002368105.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424198.1"
                     /translation="MTTKLEIAKSKLDRIKSEMLATRKEIRREHDLIPFGQPNIVGRG
                     DIYKNVKRMHTKGIKLLNEQEKQERRIEMLEKVEEFKSENELLKDVSVVGKTSYANIG
                     AKTSVNNLDYFRNKLQELEKKNEEAKAYNKTKPAVKARTLGAEITKLKKKIKLLEDMQ
                     EKAETTELSPKAKELVENGDVNQWKKKPIYYFVVGLNKVALELDDKGNFIVSHRYPAR
                     SESDKTFVASLLQ"
     gene            2170..>2547
                     /locus_tag="U0342_002873"
     CDS             2170..>2547
                     /locus_tag="U0342_002873"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424199.1"
                     /translation="MANLSFAEGTIHFTKESILNHSEEIKLLLKAMHDHQNSAEYSTS
                     TNFSEAQLDEVDSARLVEESLTISFYGNGRWSYINNIEFFFKGLSEYIEPTHFNFLKE
                     AQNAITFSFTDFEEGCGVFYSADI"
BASE COUNT          976 a          424 c          371 g          776 t
ORIGIN      
        1 tatagcactt ccttttctgt ttataatata ttaatcgcag tcttttaata atgaccttga
       61 aacaacattt tctttatact ccttccgttc tgacattgtt tttcattgcc ctctttcctt
      121 taatatagca cttccttttc tgtttataat atattaatcg cagtctttta ataatgaccc
      181 tgaaacaaca ttatctttat acttcatctt tattagaatc ttaatttttt taattgtccg
      241 cttttcttta atatagcata cacagctttt ttatttgtat gtaaacatat atacagatcc
      301 tcttaacaaa aattattcct ttttttgaga gtgttataaa tagccttcgc tatcctattc
      361 tctctgtcaa caaaatacaa ggggcgtgag aacttttttt acgttatcac taaaaaactt
      421 ccactacagc attcccttgt ttttcgtttc ctacaagaat aaacggatgt caggctaaat
      481 taacctaaaa aaataaattt caaatgaagg agagagcaaa atgaacaaga atcacaaaaa
      541 gaataccata ttaaactcac tgaagggact aacgactaca ttttcatcca aacataaatc
      601 cgagcaagtt ccactctatt atgtaacctt attaaattgc gatgaatgcg tgtttcaaac
      661 tgaagttttt acttcattca aaaaagcaaa agcttgcttt tatgttaaaa aacaagatat
      721 tttaagcaaa actacaattg aaaatatcta tgaacaagaa caatacttca taaatacatt
      781 ctcatttgtt ttaaagctag gaaaaaatta ataaaaaaag aagctttgga tagtacaaag
      841 cttctttttt tatgctgtac ttttttacaa aatgtttctt tgattttttc agcaagtgac
      901 atcgccaaac atacccccca tttggcaata ccccttttaa aaaaatactc cacttcctcc
      961 gttccagccg cctccaccac tacggtcgct tcgcattaga tcaagatcaa taaaccgaaa
     1021 atcaaataca aaagcatttt tcgattattt cagttgctct ttttgaaatg acccgtgttt
     1081 tcagaaccag tagttatctt agccttcgga atcctattct cttcacatta aaaagaccag
     1141 gggcgtaaaa actttttctt aacgctctgc taaaaaactt tttactacag cactcccttg
     1201 tctttttact cctccaagaa tgacggaatt tcaggcgacg ataacataca ctgaaaaaac
     1261 gggctataac aaatcaaaga aaggagaact ataaacaatc aaaatataaa aattctttta
     1321 aagatggctc tgaaaaacaa acctaaaaaa acaggttgaa agaactaaaa aaatataagg
     1381 gaatggtgac catgacaaca aaattagaaa tagcaaagtc aaaattagac agaattaaaa
     1441 gcgaaatgtt agctactaga aaagaaattc gcagagaaca cgatttaatt ccatttgggc
     1501 aacctaacat cgttggtaga ggagatatat ataaaaatgt aaagagaatg catacaaagg
     1561 gaattaaact actcaatgag caagaaaaac aagaacgtag aatcgaaatg ctcgagaaag
     1621 tagaagaatt taaaagtgaa aatgaattgc taaaagatgt gagcgttgta ggaaaaacaa
     1681 gctatgcaaa tattggagca aaaacaagtg tgaataattt ggactatttc agaaataagt
     1741 tacaagaatt ggaaaaaaag aacgaggaag caaaagcata taacaaaacc aagccagctg
     1801 ttaaagcgag aacactagga gcagagataa caaagcttaa aaagaagatt aaattattag
     1861 aggatatgca agaaaaggct gaaacaacag aattaagtcc taaggcaaaa gagcttgtag
     1921 aaaatggtga tgttaatcaa tggaagaaaa aacctattta ttactttgta gtcggcttaa
     1981 ataaagtagc cttagaactt gatgataaag gtaatttcat tgtctctcat cgttacccag
     2041 ctagaagtga aagcgataaa acctttgtag catctttact tcaataactt agatattact
     2101 ataaagttct gataaaagtc actagctttt atcagaacta aaaacttaaa attaaaggag
     2161 actaaaaaca tggctaactt atcatttgca gaaggaacta tacattttac aaaagaaagt
     2221 attttaaatc actcagaaga aataaaatta ctattaaaag ctatgcatga ccatcaaaat
     2281 tctgctgaat atagtaccag tacaaatttt tcagaagctc aattagatga agttgattct
     2341 gctagacttg tcgaagaatc actaactatt tcattctatg gaaatggaag gtggtcatat
     2401 atcaataata tagagttctt ttttaaagga ctatctgaat atattgaacc aactcatttt
     2461 aatttcctta aagaagctca aaacgctatt actttttctt ttactgattt tgaagagggt
     2521 tgtggagtat tctattctgc ggacatt
//
LOCUS       DASEAA010000250         2528 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.251, whole genome shotgun sequence.
ACCESSION   DASEAA010000250 DASEAA010000000
VERSION     DASEAA010000250.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2528
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.251"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            18..908
                     /gene="murQ"
                     /locus_tag="U0342_002874"
     CDS             18..908
                     /gene="murQ"
                     /locus_tag="U0342_002874"
                     /EC_number="4.2.1.126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727333.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramic acid 6-phosphate etherase"
                     /protein_id="HEM2424200.1"
                     /translation="MLENLATEERNEKTIDLDTLSPKEILAVMNEEDLTVPIAIKKVL
                     PQIELIVSGVISCFQKGGRLIYLGAGTSGRLGVLDAAECVPTFGVSKEQVIGLIAGGE
                     KAFVAAIEGAEDSKILGENDLKQIKLTANDFVIGIAASGRTPYVIGALDYAKSVGAKT
                     GAISCNANAKISAHADIAVEVVTGAEILTGSTRLKAGTAQKLVLNMISTASMVGIGKV
                     YKNLMVDVLPTNKKLEERSKRIIMEATEADYETANKFYEAAEKHVKVAIVMILTNSTK
                     EIALEKLSEAKGFVRNTIQK"
     gene            921..2369
                     /locus_tag="U0342_002875"
     CDS             921..2369
                     /locus_tag="U0342_002875"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS transporter subunit EIIC"
                     /protein_id="HEM2424201.1"
                     /translation="MTKEAEIGKQIFIHVGGMENVSRIAHCMTRVRLGIVDSDLVNVA
                     GLKKVPGVIGVVEDDTLQIIVGPGVVNKVAGAMAEMAGVKIGETIQENLDSGTKTGKE
                     LVEEKASKTKAELKAKQNNSSGFKRLLKSISNIFVPLIPGFVGAGLIAGIAAIISNNI
                     TAGNLDAAVWTQYIDILGVINKGIFAFLAIYVGINTANEFGGTPVLGGGIAGITLLSG
                     LAEGHTITNIFTGDPIVAGQGGIIGVLLAVWLMCVLEKNLRKIIPNAIDIIFTPTLVL
                     LIIGLVTIFLIMPFAGLVSDGLVNGINWVIEVGGVFAGFVLGTLFLPMVMFGLHQVLT
                     PIHVEMIAQNGYTILLPILAMAGGGQVGAAIALWIRCRKNKPLVNMIKGGLPVGILGI
                     GEPLIYGVTIPLGKPFLTACLGGGIGGAVIGYFGNVGAIAIGPSGVALIPLIANNEWL
                     SYVIGLIAAYLGGFILTYFFGTPKDAMNSVEL"
BASE COUNT          827 a          375 c          569 g          757 t
ORIGIN      
        1 tggaaggagt ggttaaaatg ttagagaatt tagcaacaga agaacgaaat gaaaaaacga
       61 ttgacttaga cacactttct ccaaaagaaa ttttagcagt aatgaatgaa gaagatttaa
      121 cagttccaat agctataaaa aaggtcttac ctcaaatcga gttaattgta agcggtgtca
      181 tctcgtgctt tcaaaaaggt ggccgtttga tttatcttgg tgccggaaca agtggaagat
      241 taggagtact tgatgcagct gaatgtgttc caactttcgg ggtctcaaag gagcaggtca
      301 ttggcttaat cgcaggtggt gaaaaagctt ttgtagctgc aatagaaggt gcggaagatt
      361 caaaaatact tggcgaaaac gacttaaagc aaattaagtt aactgcaaac gattttgtta
      421 ttggtattgc tgcaagtggt agaacgcctt atgtaattgg cgcacttgat tacgccaaat
      481 ctgtcggggc taaaaccgga gcaatttctt gtaatgctaa tgcaaaaatt tcagcgcacg
      541 ccgatatagc cgtagaagtt gtgaccggag cggaaatttt aacaggttct actaggttaa
      601 aagcaggaac agctcagaaa ctagtattaa atatgatttc aacagcttca atggttggaa
      661 ttggaaaagt gtataaaaat ttgatggtgg acgttttacc aacaaataaa aaattagaag
      721 agcgctctaa acgaattatt atggaagcta cagaggctga ttacgaaaca gcaaataaat
      781 tttatgaagc agctgaaaaa catgtcaaag ttgccattgt catgatctta accaattcaa
      841 ccaaagaaat agcgttagaa aaattaagtg aagcaaaagg gtttgttcga aacaccattc
      901 aaaaataagg agctggaata atgacaaaag aagcagaaat tggaaaacaa atatttattc
      961 atgtcggtgg aatggaaaac gtttcaagaa ttgcacattg tatgacacga gttcgattgg
     1021 ggatagttga tagtgacctt gttaatgtag ctggattaaa aaaagttccg ggtgttatcg
     1081 gtgttgtaga agatgatact ttacagatta ttgttggacc aggagttgtg aacaaagtgg
     1141 ccggcgcaat ggcagaaatg gctggtgtta aaattggcga aacgattcaa gaaaatttgg
     1201 atagcggcac aaaaactggt aaggaattag tcgaagaaaa agcatccaaa acaaaagctg
     1261 aattaaaagc aaaacaaaat aattcatctg gttttaaaag attactaaaa tcaatctcta
     1321 atatttttgt tccactaatt ccgggttttg ttggagcggg attaattgct ggtattgcag
     1381 caattatttc taataatata acagctggaa atttagatgc tgctgtttgg actcaatata
     1441 ttgatatttt aggagttatt aataaaggaa tatttgcctt cttagctatt tatgtaggga
     1501 ttaataccgc gaatgaattt ggtggaacac ctgtactcgg tggtggaatc gctgggataa
     1561 cattgctttc cggattagca gaaggacata caattacaaa cattttcacg ggggatccta
     1621 tcgtagccgg acagggtggc attatcggcg tattattagc agtttggtta atgtgcgtac
     1681 ttgaaaaaaa cttgcgcaaa atcattccga atgcgataga tattattttt acgccaacgc
     1741 ttgtattact tattattggt ttagtaacta ttttcttaat tatgcctttt gcaggacttg
     1801 tatcagatgg tttagttaac ggtattaatt gggtaatcga agttggagga gtattcgcag
     1861 gttttgtgct agggacgtta ttcttaccaa tggttatgtt tgggttacat caagttttaa
     1921 cacccatcca tgtagaaatg attgctcaaa atggttatac tatcttactt cctattctag
     1981 ctatggcagg tggcggacaa gttggtgcag caatcgcgct ttggattcgt tgtcgtaaaa
     2041 ataaaccact tgtaaatatg attaaagggg gtctaccggt tggaatttta ggtatcggtg
     2101 aaccattaat ttatggggta acaataccac ttgggaaacc ttttcttaca gcttgtctcg
     2161 gaggcggtat cggtggggca gtaatcggct actttggtaa cgtcggagca attgcaatcg
     2221 gcccatcagg agttgcactt atcccactaa tcgcgaataa tgaatggctt tcttacgtca
     2281 tcggattaat tgcagcatat ttaggtggat tcattttaac ttatttcttt ggtacaccaa
     2341 aagacgcaat gaatagcgta gaattgtaag aagtaattgc tgttccacgg aaatttgtac
     2401 acattgaagt gaattgatta gagaagcttc gaaattagtt ttattactaa tttcgaagct
     2461 tttttacgca gttagcataa caaataatga atccgttttg atagtattaa agtaaaacgg
     2521 ggtgtcaa
//
LOCUS       DASEAA010000251         2517 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.252, whole genome shotgun sequence.
ACCESSION   DASEAA010000251 DASEAA010000000
VERSION     DASEAA010000251.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2517)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2517)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2517
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.252"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            96..1235
                     /gene="queG"
                     /locus_tag="U0342_002876"
     CDS             96..1235
                     /gene="queG"
                     /locus_tag="U0342_002876"
                     /EC_number="1.17.99.6"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464459.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA epoxyqueuosine(34) reductase QueG"
                     /protein_id="HEM2424202.1"
                     /translation="MIVKSTSDYAALKEELIAYAHEIGIQKIGFTTADPFLFLKERLL
                     EAEALDLFTGFEHPVIDERVYPELIFKEPQSIIAIALAYPSKLKEAPISKKGARRGVF
                     ARASWGIDYHTVLREKLALLETFLSERLPDVRMKSMVDTGELSDVAVAERAGIGWRGK
                     NTLLITPEYGSWVYLGEMITNIPFEPDTPASDLCGSCNQCVKACPTGSLLGEGKMNPK
                     ICLSYLTQTKDFLDEKYREVLHNRLYGCDTCQVVCPYNRGHDFHFHDEMEPDPELVRP
                     ELKPLLHISNRAFKEQFGDMAGSWRGKKPIQRNAIIILARYKDKTAVPDLIDCLQNDP
                     RPVIRGTAGWALRKIGGSDAEKAVEQALQTEQDEQVLQELTAITN"
     gene            1256..1765
                     /gene="trmL"
                     /locus_tag="U0342_002877"
     CDS             1256..1765
                     /gene="trmL"
                     /locus_tag="U0342_002877"
                     /EC_number="2.1.1.207"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464460.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tRNA
                     (uridine(34)/cytosine(34)/5-
                     carboxymethylaminomethyluridine(34)-2'-O)-
                     methyltransferase TrmL"
                     /protein_id="HEM2424203.1"
                     /translation="MPNHIVLYQPEIPANTGNISRTCAGTDTYLHLIRPLGFSTDDKM
                     LKRAGLDYWDNVKLSYYDSLDEFFEKNEGGEFYYITKFGRHVYSDIDYSDPNKDYFFV
                     FGKETTGLPDALLQKNEENCLRIPMTDHIRSLNLSNTAAILAYEALRQQNFGALLQEP
                     NYDRKIFQD"
     gene            1778..>2517
                     /gene="nfsA"
                     /locus_tag="U0342_002878"
     CDS             1778..>2517
                     /gene="nfsA"
                     /locus_tag="U0342_002878"
                     /EC_number="1.5.1.38"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464461.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="oxygen-insensitive NADPH nitroreductase"
                     /protein_id="HEM2424204.1"
                     /translation="MNQAIDAILGHYSVRKFEDKDLTEEALTLLIKSAQAASTSSFVQ
                     AYSIIGITDKGVREQISAIAGNQPYTVQTGQLFIFVADLARHHAILEEHQVDTTALET
                     SEKWLVSVIDAALAAQNMAVAAESLGLGICFIGGIRNDVEQISEILDLPPYTMPLFGL
                     TIGYPVANKEKAKPRLPQDLVYHENTYQKMNPTILTEYDEQIKNYYDERTAGKRVEGW
                     SEQIARGLGRPSRLDLKAFMEKQHLNQK"
BASE COUNT          834 a          472 c          539 g          672 t
ORIGIN      
        1 ttttttataa atcctgttat caacgcagtg tttcgacctt tttaagcgaa gcattgcgtt
       61 tattttattg cctgaaaata aggagagagg ggatgatgat agtgaagtcg acatcagatt
      121 acgccgcatt gaaagaagaa ctcattgctt atgcgcatga aataggtatt caaaaaattg
      181 gtttcacaac agcagaccct tttttatttt taaaagaacg attactagaa gcggaagcgc
      241 tggacctttt tacaggattt gaacatccgg taattgatga acgggtttat ccagagctta
      301 ttttcaagga accgcagtcg attatcgcca ttgcacttgc ttatccgtct aaattaaaag
      361 aagcacctat aagtaaaaaa ggagctagac gaggtgtatt tgccagagct tcttggggaa
      421 ttgattatca taccgtttta cgagaaaaat tagcgctact cgaaactttt ttaagtgaac
      481 gtttgccaga tgtacgaatg aaatcaatgg tggatactgg ggaattatca gatgtagctg
      541 tagcagaacg agcgggcatt ggctggcgcg ggaaaaacac gctgctcata acgccagaat
      601 acggctcgtg ggtctattta ggcgaaatga taaccaatat accattcgaa ccagatacgc
      661 cggctagcga cttgtgtggt agttgcaatc aatgtgtgaa agcctgcccg acaggttcct
      721 tactgggtga agggaagatg aatccgaaaa tatgtttaag ttatttgaca caaacaaaag
      781 actttctaga tgaaaaatat cgcgaagtgt tgcataatcg tttgtatggt tgtgatactt
      841 gtcaggtagt ttgtccgtat aatcgtgggc atgatttcca ctttcatgat gagatggagc
      901 cggatccaga gcttgttcga ccagaattaa aaccactatt acacatttcc aatcgcgctt
      961 ttaaagaaca atttggcgat atggcgggtt cgtggcgtgg gaagaagccc attcagcgaa
     1021 atgccatcat tattctagcg cggtataaag ataaaacagc tgtaccagac ttaattgact
     1081 gtttacaaaa cgatccaaga ccagtcattc gaggaacggc tggctgggcg ctaagaaaaa
     1141 tcggtggaag cgatgccgaa aaagctgtcg agcaagcact tcaaaccgaa caagatgaac
     1201 aagtattaca agaattaaca gccataacaa attaatagaa accaggtgaa aagcaatgcc
     1261 aaaccatatc gtactatatc aaccagaaat cccagcgaat accggaaata tctccagaac
     1321 atgtgccggg acggatactt acttacattt aatccgtcca cttggttttt cgacagatga
     1381 taaaatgtta aaacgtgctg gacttgatta ctgggataac gtaaaacttt cctattacga
     1441 ttctctagat gaattcttcg agaaaaatga aggcggagaa ttttactaca ttaccaaatt
     1501 tggtcgtcat gtttatagtg atatcgatta tagtgaccca aacaaagatt atttcttcgt
     1561 ttttggaaaa gaaacgaccg gattgccaga tgcgctttta caaaagaatg aagaaaattg
     1621 tttgcgtatt ccaatgacag atcatattcg ttcgttgaat ttatcgaaca cagcggcaat
     1681 tttagcttat gaagcgttac gtcagcagaa ttttggcgca cttttacaag aaccgaatta
     1741 cgatcgaaaa atttttcaag actaaggggg agttaggatg aatcaggcga tagatgctat
     1801 tctaggacat tactcagtgc gaaaatttga agataaggac ttaacggaag aagcgttgac
     1861 cttacttatc aagagtgcac aagccgcatc tacatccagt tttgttcaag catactccat
     1921 catcggaata acagataaag gcgttcgtga acaaatctca gccattgcag gaaatcaacc
     1981 atatacagta caaaccggtc aactatttat tttcgttgct gatttagctc gtcatcacgc
     2041 catcttagaa gaacatcaag tggatacaac tgcactggaa acgtcagaaa aatggcttgt
     2101 ttctgtgatt gatgccgcac ttgctgcaca aaatatggcc gttgccgcag aatcattagg
     2161 acttggcatt tgctttattg gcgggattcg taacgatgtc gaacaaatct cggaaatact
     2221 tgatttacca ccatatacga tgccattatt cggcttgaca attggttatc cggttgctaa
     2281 caaagaaaaa gcgaaaccga gattgcctca agatttggta taccacgaaa acacctacca
     2341 aaaaatgaac ccaactattc taactgaata tgatgaacaa ataaaaaatt actacgacga
     2401 aagaacagca ggaaaacgag tagaaggttg gtccgaacaa attgcgcgtg ggcttggaag
     2461 accaagccgg ctagacttaa aagcatttat ggaaaaacaa catttaaatc aaaaata
//
LOCUS       DASEAA010000252         2481 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.253, whole genome shotgun sequence.
ACCESSION   DASEAA010000252 DASEAA010000000
VERSION     DASEAA010000252.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2481)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2481)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2481
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.253"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            694..1917
                     /locus_tag="U0342_002879"
                     /pseudo
     CDS             694..1917
                     /locus_tag="U0342_002879"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728127.1"
                     /note="internal stop; Derived by automated computational
                     analysis using gene prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5011 domain-containing protein"
     gene            2034..>2481
                     /locus_tag="U0342_002880"
     CDS             2034..>2481
                     /locus_tag="U0342_002880"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_011701208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2424205.1"
                     /translation="MPKIAKGNRLENVAFEYIKNKITTGEYPTGYRVVEAKLSQELNM
                     SRTPIRRAIINLCHSGFLVHQYNRGAFVQNTEVTITEFFSRMKLVELLMYESTEKLIL
                     REDYIVVDDIIEIAEKVIQYEKNKEYELMRDTFEDFIVAFIGKLNND"
BASE COUNT          943 a          380 c          456 g          702 t
ORIGIN      
        1 atatcgaaat tgtgtccaaa gctggtcact tgacaactaa aaaggaacat ttttttgata
       61 attgtcctca agtaagtaaa tctaaacaac atggaaaatt agctttggat actatttttg
      121 atgctatgtt cttaatggtt gaaagcgcta taaatggcgt ttttataagc tataattgat
      181 attggataac agttccaact acataatata gcgaggtgaa aacgatgaat ttctttctac
      241 aattattagg taacttctct ggaggtttaa atttcccaga cgtaacagaa gtactaaaca
      301 acttaatcaa agcaattttt ggttgatttc aaaaaaataa aacgtaaagg aggctactac
      361 aagtgaattt tttcttacaa ttattaggta atttttctgg agcgattaac tttccagacg
      421 taacagaagt actaaacaat ctaatcaaag ggatttttgg ttgatcctaa gaacataaat
      481 cagtaaagga ggctactaca aatgaatttt ttcttgcaat tgttaggtaa tttttcaggt
      541 gcaatccgct ttccggacgt agcagaagta ctaaacaact taatcaaagg tatctttggt
      601 taattgccaa ttagaataag ttgaaatata gggttaaggc taacttaacc ctattttcta
      661 attaaagatg taaataagga ggattttaaa tccatgaaaa aaataatcgc gttaatcaca
      721 gcagttgcac ttctatcaat gattggattt gcctttatcc ctggtactgt tgcgaatgca
      781 gcgaattcat cagaaagcag tttaacatac aaagatgtac gcagtggatt ttactttgtt
      841 ggttatgaaa atgtacaact tgaaacagga aaaacataca agtacacagt agcgtatgaa
      901 gcaaatgttg atatgaaaat gacagatact attacaggac aatcagcaaa agcaggactt
      961 tttacaccaa aatcatccgg tgccgagctg aacactagtt acgtaagccg aacaaagaat
     1021 aacgttatag acgtagctga tgcaggtaat aaggttttta aacacacatt tgaatttaca
     1081 gcgaaggaaa atacaaaagc agatatcggt gttttcttag gagcaggttc tgttcttcca
     1141 acaactccag aaaccacgtc cctttggaaa aacgtaaccg tgacaaatga aactccacta
     1201 gtataagcgg aggctccagt tattagtgca gaagataaaa ctatcaatca aaatgaaagt
     1261 tttaatccac taaatgaagt cactgcgtca gacgaaaaag acggtgatat tacaaaggac
     1321 atccacgtaa ccaaaaatac ggtagatacg actaagagtg gcaaatatga tgtggattat
     1381 agcgttacaa attcaagcaa cttaacaacg acaaaaagta ttaaagtaac cgtaacccca
     1441 gcagcaataa gcaaaaatac agccccagtt attaatgcaa aagatcaaac aatcaaagtt
     1501 ggagatgtgt ttaatgtgtt aaaaggagtt actgcgaaag ataacgaaga tggtgattta
     1561 acagcaaaaa tcaaagtgac caaggataca gtgaataatt cgaaaaaagg tgtttatcaa
     1621 gttacatata ctgtgacaga ttctggcaat ctatcagctt cacttacaat taaagtgact
     1681 gtaactcaag atggaaaact aatagtaaat ccaagtgatc caacaaagcc atctatcaca
     1741 aaaacacctg tggaaccaac aaaaattgaa aaagatcctg aaaatagagc gacttccgtt
     1801 ttgaaagcaa gtaaaatacc aaaaactggt gatagttcaa tgatatggct agtatttgtc
     1861 ggactcggct taacagctat tggtattagt tcttatcaaa aaaaagcaaa taaataatgc
     1921 atactggatg aaaagagtat tttagattag atactctttt cattaactag atggtaaaat
     1981 ggcattctaa agctgttttt aaacagcttt atagagagag aggggaatca tttatgccaa
     2041 aaattgctaa aggtaatcga ctcgagaatg ttgcttttga gtacattaag aacaaaatca
     2101 caactgggga gtatccaacg ggttatcgtg ttgtagaagc aaagttatct caagaactaa
     2161 atatgagtag gacaccaatt aggcgagcga ttatcaacct ttgccattct ggatttttag
     2221 tccaccaata taatcggggt gcttttgttc aaaacactga agtaactatt acagaatttt
     2281 tttcgcgaat gaaattagtc gaactattga tgtatgaaag tacagaaaaa ttaattctac
     2341 gtgaagatta tattgtagtg gacgatataa tagaaatagc agagaaagta attcaatatg
     2401 aaaaaaacaa agaatatgaa ttaatgcgcg atacgtttga agattttatc gtcgcattta
     2461 taggtaagct aaataatgat t
//
LOCUS       DASEAA010000253         2428 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.254, whole genome shotgun sequence.
ACCESSION   DASEAA010000253 DASEAA010000000
VERSION     DASEAA010000253.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2428)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2428)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2428
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.254"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1956
                     /locus_tag="U0342_002881"
     CDS             <1..1956
                     /locus_tag="U0342_002881"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464154.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Cna B-type domain-containing protein"
                     /protein_id="HEM2424206.1"
                     /translation="KSISNVEVNGYEASPNTGFQIDGELENPVPLAADKYAVEAKATA
                     NTLDITNPVDIPQMQLYNVLFKVNYQKVKYGAKLVNQAAGSEVATVVPLNLNLLKQDD
                     ISKTALTGYEFKAYYADENGKADLTKPVKDTNSNEIVMTDSSGAANFIPTGYKTTSKN
                     QEWKVVLVETKTPTGYESNENKEYPVTVKSDANGNLSIPATTETNLEITNNDHGATTA
                     TIDNHADVKMIDVNGAKTWTGDTEADRPDSIEVQLLQDGVAYGSPITVTKADDWKYEF
                     KNVPETNADGNKYTYTVLENTVTNYTSAVTGLDINNTLIKPDVKMINLDGQKTWKNDT
                     ENDRPASIEIQLQQNGQDYGFPVTVTKDNDWKYEFKNLPETTNDGAAYNYTIVEKAVP
                     GYATKVDGMNVINTKIDAPKTTVSGEKTWKNDTAKDRPDYIEVQLLQNGQTYGDPVKV
                     TKENDWKYSFKDLPKTDANNNAYRYSVTEIAVPGYKTTTDGMNLTNTKVTDEKNVTTA
                     SGTKTWVGDNEKTRPASIEVQLLQNGKAYGTPIKVTAKSNWKYNFTNLPEKDKTGEKY
                     SYTVSEKQVSGYSVKVKGMDLTNTKVTKTTPKDTPKNTPKDTHSTNKPSKTKKLPGTG
                     DTNGMLLFAGGLVLLFLGLHLRRKSTK"
     gene            2053..2328
                     /locus_tag="U0342_002882"
     CDS             2053..2328
                     /locus_tag="U0342_002882"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464155.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424207.1"
                     /translation="MKEELLQAIEVGEPVLLVTAIGYIVGIVETKGELIRLNDVYINC
                     VSASRVNRFSRGLAVNVNQVIGMQLLSKSEKDEMIGGWKAYVAPTAG"
BASE COUNT          974 a          451 c          460 g          543 t
ORIGIN      
        1 aaatctatct ctaatgtaga agtaaatggt tatgaggcaa gtccaaacac gggcttccaa
       61 attgacgggg aacttgaaaa tcctgtacca cttgctgcgg ataagtatgc ggtagaagca
      121 aaagcaactg caaacacatt agatatcaca aacccagttg acattccaca aatgcaacta
      181 tataacgttc ttttcaaagt gaattatcaa aaagtgaaat acggcgcgaa actagttaac
      241 caagcagcag ggtcagaagt tgcaactgtt gttccattaa acttaaatct tctaaaacaa
      301 gatgatataa gcaaaacagc attgacaggc tatgaattca aagcttatta tgcagatgaa
      361 aatggaaaag cagatttaac gaaaccggtc aaagatacaa atagtaatga aattgttatg
      421 acagactcat ccggcgcagc aaatttcatc ccgacaggtt ataaaacaac ttctaaaaat
      481 caagaatgga aagtagttct tgttgaaaca aagacaccaa ctggttatga atcaaatgaa
      541 aataaagagt atccagttac agtgaaaagc gatgcgaatg gcaacttatc cattccagcc
      601 actacagaaa caaaccttga aatcaccaat aatgatcacg gcgcaacaac agcgactatt
      661 gacaaccatg cagacgtgaa aatgattgat gtgaatggcg cgaaaacttg gactggtgac
      721 acagaagcag atcgcccaga ttccatcgaa gtacaacttt tgcaagacgg tgtagcatac
      781 ggtagcccaa ttactgtaac aaaagcagac gactggaaat acgaattcaa aaatgttcca
      841 gaaacaaatg cagatggaaa taaatacacg tatacagttt tagaaaatac agttactaac
      901 tatacaagtg ctgtcacagg tcttgatatt aacaacacgt taatcaaacc agatgtaaaa
      961 atgattaatc ttgacggaca aaaaacatgg aaaaacgata cagaaaatga ccgtcccgca
     1021 tccatcgaaa ttcaactgca acaaaatggg caagattacg gtttcccagt aacagttaca
     1081 aaagataacg attggaaata cgaatttaaa aacctaccag aaacaaccaa tgatggagcg
     1141 gcttacaatt acacgattgt cgaaaaagca gttccaggct atgcaaccaa agtcgacgga
     1201 atgaacgtca tcaacacgaa aatagatgca ccaaaaacca ctgtctctgg tgaaaaaaca
     1261 tggaaaaacg acacagccaa agaccgtcca gactatatcg aagtacaact tttacaaaat
     1321 ggacaaactt atggtgatcc agtcaaagta acgaaagaga acgactggaa atatagcttc
     1381 aaagatctac ctaaaaccga tgctaacaac aacgcttatc gttactctgt tactgaaata
     1441 gcagttccag gctacaaaac aaccacagat ggaatgaact taaccaatac aaaagtaacc
     1501 gatgagaaaa atgtaactac agcgagcggc acaaaaactt gggtgggaga caatgaaaaa
     1561 acacgtcccg catccatcga agttcaactt ttacaaaacg gtaaagcata cggaacacca
     1621 atcaaagtaa cagcaaaatc gaattggaaa tacaacttta ccaaccttcc agagaaagac
     1681 aaaacaggtg aaaaatacag ctatactgta tctgaaaaac aagtatctgg ctatagtgta
     1741 aaagtaaaag gtatggactt aacgaataca aaagtaacaa aaacgacacc aaaagataca
     1801 ccaaaaaata caccaaaaga tacacattct accaataaac caagtaaaac gaaaaaatta
     1861 cctggaactg gtgatacgaa tggtatgttg ctatttgctg gtggattagt actattattc
     1921 ttaggtctac accttagaag aaaaagtacc aaataaagaa aacagccgat ccgagtaagc
     1981 ttggatcggt ttttcttttg aataaagtta aaatcgggta tacaaataaa aatgaaataa
     2041 gggggcttca tgatgaaaga agaattactg caagcaatcg aagtcggcga gccagtttta
     2101 cttgtaacag caatcgggta tattgtagga attgtggaaa caaaaggaga gcttattcgc
     2161 ttaaatgatg tgtatatcaa ttgtgtttca gctagcaggg taaatcgttt cagccgaggc
     2221 ttagctgtga acgtcaatca agtcatcggt atgcaactat taagtaagtc ggagaaagac
     2281 gaaatgattg gcggctggaa ggcatacgtg gcacctacag ctggctaagc tatgatataa
     2341 tataaacagc acttacggag gtctgaacga atgatattat tagttgttga tacacaaaaa
     2401 ttaattatga cgaataatct atacaatt
//
LOCUS       DASEAA010000254         2342 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.255, whole genome shotgun sequence.
ACCESSION   DASEAA010000254 DASEAA010000000
VERSION     DASEAA010000254.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2342)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2342)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2342
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.255"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(42..1232)
                     /locus_tag="U0342_002883"
     CDS             complement(42..1232)
                     /locus_tag="U0342_002883"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727622.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug effflux MFS transporter"
                     /protein_id="HEM2424208.1"
                     /translation="MEKNIETKKINLALLVCLVGFPQISETIYTPSLTEIATSYGVSL
                     NLAQMTLSIYFLAFAVGVFFWGVSSDFLGRRKAMNFGIFIYILGCFVCLFSNNITMLF
                     IGRFVQAFGASTGSVTTQTILRDNYHGNDRHHLFAKISAALAFSPAIGPLIGGFIGQY
                     YGFRVVFLFLVVMGMILLFWSLKRLPETKTANATPFSVQKMVVIGKKMIFDRYTIAFG
                     VLIGIFNGILFSYYSEAPTIFIERFHFNQSQYGFMGCAVATATILGAWLSNWRLKQNS
                     PHKIIKEGILLALIGTLFLSMVALFPLTIQVIFYIFFISIILVGIGMSLPNCLSLALV
                     KFQEVAGTAGAFLSLGYYVIVSLCTFFIGVLHSGSILVFPAFCLVLLLIALLCIKIAA
                     RNNP"
     gene            1833..2228
                     /locus_tag="U0342_002884"
     CDS             1833..2228
                     /locus_tag="U0342_002884"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466298.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="lactococcin 972 family bacteriocin"
                     /protein_id="HEM2424209.1"
                     /translation="MKRKVCVLAIALPTVLSPMGALAAQNLNEGETSLDSLMSANKTG
                     EKVIFSETTTGKKPLLKAAQSAGGGTFWVTWGQDRHYSNYQHYKKMHRSSASNFRTTV
                     RSRWEPKSNLASVWIKSSLWGNKANWATK"
BASE COUNT          829 a          380 c          454 g          679 t
ORIGIN      
        1 aactggcacc gtttcaagat agaaacggtg ccagtttttt gctaagggtt atttctagca
       61 gctattttta tacagagcaa ggcaattaga agtaatacta ggcagaatgc gggaaataca
      121 agtattgatc ctgaatgcaa aacgccaatg aagaaagtac aaagactgac aattacataa
      181 tatcctaagc ttaaaaaggc gccagctgta ccggcaactt cttgaaattt cactagtgct
      241 agacttaaac aatttggtaa agacatgcca attcctacta agataataga aatgaagaag
      301 atgtagaata taacttggat agtaagcggg aatagggcaa ccatgctaag aaatagagtg
      361 ccaataagag ctagcaaaat tccttcttta atgattttat gaggtgaatt ctgctttaag
      421 cgccagttcg atagccaagc tcctaaaata gttgccgtag ccactgcgca ccccatgaag
      481 ccatactgac tctgattaaa atgaaacctc tcaataaaaa tagtaggagc ttcagagtag
      541 taactaaaca atattccatt aaaaatacca attagcactc caaaagcaat tgtatagcgg
      601 tcaaaaatca tttttttacc aattactacc attttctgca cactgaatgg ggtggcgttc
      661 gctgtttttg tttctggtag tcgttttaaa ctccagaaca gcaatatcat tcccataact
      721 actaaaaata aaaaaaccac gcgaaagccg taatattgtc cgataaatcc accaattaat
      781 ggcccaattg ccggtgaaaa tgccaaagcg gctgagattt ttgcaaataa atggtggcga
      841 tcattaccgt ggtagttgtc acgcaaaatg gtctgtgttg taacagaacc cgtacttgcg
      901 ccaaatgctt gaacaaagcg tccgataaaa agcattgtaa tattatttga aaaaaggcag
      961 acgaagcaac caagaatata gataaatatc ccaaagttca ttgcttttcg tcgacctaaa
     1021 aaatcggaac taacgcccca aaagaagaca ccaactgcaa aagcaagaaa gtagatgctt
     1081 aaagtcattt gagccaaatt taatgagacg ccgtagctcg tagcaatctc cgttaaagaa
     1141 ggcgtataaa tagtttcgct aatttgtgga aaccccacaa ggcacacaag taatgctaaa
     1201 tttattttct ttgtttcgat gtttttttcc ataaaattct ctcctgaata agttatttat
     1261 ctgggaaaaa aacatctttc acagggaaat ggtgggacca tgattttaat acgctcgtaa
     1321 aaaagcatgc agtcacccct ttctatttta aacggagaag gttccgtttt ttcgttaaag
     1381 tttattgtag tataaatggg tggaaagata aagtgttggt ggacgattga ataaatatac
     1441 actgatattt acttgaattc agcatttaag tgaacaagtt caaatatatg tggttaagtt
     1501 aagctggtat atgaaacttt tgtgactatc aagcttgagg ctgaatagaa acatgtataa
     1561 tgagctgtct agcgcttttt tattctgaaa atggagtttt tgtaacacga tatgtgtaga
     1621 aaatgcacta agacactata actttagcta tttaggataa gaatggagtc gttcattaca
     1681 ttttggttat acattacttt tttgtgttac attgggaata gttggaatat tataaaagta
     1741 aaaatttgga ggtttcatag ggaaggatat attctaacct gtttatttgg ttatgcaata
     1801 taactattaa ttggaaagag ggggagaata caatgaagag aaaagtatgt gttttagcga
     1861 tagcattgcc tacagtgtta tcaccgatgg gcgccttagc tgctcaaaat ctaaatgaag
     1921 gagagactag cttagattca ctaatgagcg caaataaaac aggtgaaaaa gtgatttttt
     1981 ctgagaccac aacaggaaaa aaacctctat taaaagcagc gcaatcagct ggaggcggta
     2041 ctttctgggt tacatgggga caagatagac attattcaaa ttatcagcat tataaaaaaa
     2101 tgcatagatc aagtgcctct aatttcagga cgacagtaag aagtaggtgg gaaccaaaga
     2161 gcaatctagc aagtgtttgg attaaatcat cgctatgggg taataaagct aattgggcta
     2221 caaaataatt cctataaagc taagaaatta ttatgtttct tagctttata gttaaactaa
     2281 ggatgattta atgaaaaaat ttctttccat tatcatatta gtaacacttg tcattggtaa
     2341 ta
//
LOCUS       DASEAA010000255         2308 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.256, whole genome shotgun sequence.
ACCESSION   DASEAA010000255 DASEAA010000000
VERSION     DASEAA010000255.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2308)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2308)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2308
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.256"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..843
                     /locus_tag="U0342_002885"
     CDS             <1..843
                     /locus_tag="U0342_002885"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424210.1"
                     /translation="IFNTKESISEVQISPDYRNILLYSAESAEKATMRIIALNDGSTV
                     ASRSTKPLTTTFYWNDESPEKIMFVSYSPEWNFQIENWDYTLNQLHKIDVASPFISWY
                     GDNLVISNNKDKPDDELGNLYLQDIRDNATKNLIVANIMQFAVHDNVLLTIEKNSDEK
                     LLYDFRTLGFQNFFSYNAAREYDELGTFVPYFDTNFDKNTFLTFVPYKSAKIGSGAKE
                     YKLVKIDPTNKKESTILELMDNQPILSYEKGDLVLYGYLFDKVIDTKTGKMYNLINTP
                     TKSF"
     gene            complement(861..1178)
                     /locus_tag="U0342_002886"
     CDS             complement(861..1178)
                     /locus_tag="U0342_002886"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464866.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComG"
                     /protein_id="HEM2424211.1"
                     /translation="MKTNAFTLPFTIFIALISILIVTGTASIFKTQIQYEKMIQNYYL
                     ASTKLNLAFIEIKETSSLSHQFKINFKGAKIDCQATDNQLTEFNCQITLENGYTLAKT
                     TSP"
     gene            complement(1175..1642)
                     /locus_tag="U0342_002887"
     CDS             complement(1175..1642)
                     /locus_tag="U0342_002887"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464867.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComGF family competence protein"
                     /protein_id="HEM2424212.1"
                     /translation="MQKINRKKNVSFRNGSPAFTLLETILSITIILSISSLIPLFFQC
                     YNKTIQISNIDQTTEWQLFLIQTRLELEKATNIQIDRNKLSFSNGKDLITYSKYNDLV
                     RRQVNGKGHEPLLTNVKDYQLIKKEKQLHLTVQDSNTQIYTSVFALPEVVSNP"
     gene            complement(1605..1889)
                     /locus_tag="U0342_002888"
     CDS             complement(1605..1889)
                     /locus_tag="U0342_002888"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464868.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM2424213.1"
                     /translation="MNKINGFSLVESMVSLLLFSMVCSFLLPTAMTIFEKLDYQKETS
                     RVYQEIYEHSELLRHKSVPVNFKDERIESFHYQGGIQICAKNKSEEKCIF"
     gene            complement(1882..2304)
                     /locus_tag="U0342_002889"
     CDS             complement(1882..2304)
                     /locus_tag="U0342_002889"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464869.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system protein"
                     /protein_id="HEM2424214.1"
                     /translation="MKINGFTLLEMLLVLTISFTLITLTIFPISSTLSTLREKQLLEE
                     IKATIYYAQINAVATKQDTFISFDPMRNQLITYTNSKTLAILPFSQTLTLTQPKIGNF
                     RFSSTDGSINRFSTIHLTSSTNNYKLIFQIGKGRFRIE"
BASE COUNT          753 a          322 c          414 g          819 t
ORIGIN      
        1 atctttaata cgaaggaatc tatttctgaa gtgcaaatta gtccagacta tcgaaatatc
       61 ttactttatt ctgctgaatc agctgaaaaa gccacgatgc gaataatcgc tttgaatgat
      121 ggttcaactg ttgcttcacg ttcaacaaag cctctaacga cgacatttta ttggaatgat
      181 gagtcacctg aaaaaatcat gtttgtctca tatagtccag aatggaattt tcaaatagaa
      241 aattgggact atacgttgaa tcaactgcat aaaatagatg tcgcgtcacc ttttatttcc
      301 tggtacggag ataatttggt gatttcgaac aataaagaca aaccggatga tgaattagga
      361 aacctttatt tacaagacat tagagataac gctactaaaa atttaattgt agctaatatt
      421 atgcaatttg ctgttcacga taatgtactg cttactattg aaaaaaactc tgatgaaaaa
      481 ttattatacg attttagaac actgggattt caaaatttct tttcgtataa tgctgcacga
      541 gaatacgatg aattagggac ttttgttccg tattttgata caaattttga taagaatact
      601 tttctaacat ttgttccata taaaagcgct aaaattggca gcggagcaaa agagtataag
      661 ttagtaaaaa ttgatccaac gaacaaaaaa gaatcgacta tcttggaatt aatggataac
      721 caacctattt tatcttatga aaaaggggat ttagttctct atggttattt atttgataag
      781 gtaatcgata cgaaaacagg taaaatgtat aatttaatta atacaccaac taaatctttt
      841 taaaacaacg agttccttct ttaagggctc gttgtttttg ctaatgtata gccgttttct
      901 agtgtgattt gacagttgaa ttctgttagt tgattatccg tcgcctggca atctatcttt
      961 gcgcctttga aatttatttt aaattgatgt gaaagtgagg atgtttcctt aatttctatg
     1021 aaagctaaat ttagtttagt ggaggctaaa taataatttt gaatcatttt ttcatattgt
     1081 atttgtgtct taaagataga agcagtacca gtaacgatta aaattgaaat aagcgcaatg
     1141 aaaatggtaa atgggagcgt aaatgcatta gtcttcatgg attggatacc acttctggta
     1201 atgcgaatac agatgtatat atctgagtat tagagtcttg caccgttaaa tgaagttgtt
     1261 tttctttctt gattaattga taatctttca cattagtaag caatggttca tgtccttttc
     1321 catttacttg tcgacgaact aaatcattat atttggaata ggtgataaga tctttgccat
     1381 tactaaaaga aagcttattc ctatcaatct gaatattagt cgctttttct aattctagac
     1441 gagtttgaat gagaaaaagt tgccattctg ttgtctgatc aatgttacta atctggatag
     1501 tcttgttata gcattgaaaa aataatggaa tgagcgagct aatacttaaa atgatcgtaa
     1561 tagacaagat tgtttcaaga agagtgaaag caggtgagcc atttctaaaa gatacatttt
     1621 tcttccgatt tattttttgc acaaatttgg atacctcctt gataatggaa actttcgata
     1681 cgttcatcct taaagttaac tggaacgctt ttgtgccgta atagttcgct atgttcgtaa
     1741 atttcttgat agactctgct agtttctttt tgatagtcta gtttttcaaa aatagtcatt
     1801 gctgtgggta atagaaaact acaaaccatt gaaaaaagga gaagtgaaac catgctttca
     1861 actaaagaga atccgttaat tttattcaat tctaaaacgc ccctttccga tttgaaatat
     1921 tagcttgtag ttatttgtcg aacttgtcag gtgaattgtt gaaaaacgat taatggatcc
     1981 atctgtactc gagaaacgaa aatttcctat ttttggttgt gttaaagtta acgtctgtga
     2041 gaatggaagg atagcaagtg tttttgagtt agtatatgtg atgagttggt ttctcattgg
     2101 atcaaatgaa ataaacgtat cttgctttgt tgctacagca tttatttgcg catagtaaat
     2161 ggtggctttt atttcttcta gtagttgttt ctccctaagc gtggataatg tacttgaaat
     2221 aggaaagatg gttaatgtga ttagtgtaaa gctgatagtt agtacaagta acatttctaa
     2281 taaagtaaat ccatttattt tcattttt
//
LOCUS       DASEAA010000256         2290 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.257, whole genome shotgun sequence.
ACCESSION   DASEAA010000256 DASEAA010000000
VERSION     DASEAA010000256.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2290)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2290)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2290
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.257"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(16..1565)
                     /locus_tag="U0342_002890"
     rRNA            complement(16..1565)
                     /locus_tag="U0342_002890"
                     /product="16S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00177"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00177"
     gene            complement(1841..1916)
                     /locus_tag="U0342_002891"
     tRNA            complement(1841..1916)
                     /locus_tag="U0342_002891"
                     /product="tRNA-Ala"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1881..1883),aa:Ala,seq:tgc)
     gene            complement(1935..2008)
                     /locus_tag="U0342_002892"
     tRNA            complement(1935..2008)
                     /locus_tag="U0342_002892"
                     /product="tRNA-Pro"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(1972..1974),aa:Pro,seq:tgg)
     gene            complement(2019..2092)
                     /locus_tag="U0342_002893"
     tRNA            complement(2019..2092)
                     /locus_tag="U0342_002893"
                     /product="tRNA-Arg"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2056..2058),aa:Arg,seq:acg)
     gene            complement(2105..2190)
                     /locus_tag="U0342_002894"
     tRNA            complement(2105..2190)
                     /locus_tag="U0342_002894"
                     /product="tRNA-Leu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2154..2156),aa:Leu,seq:taa)
     gene            complement(2212..2283)
                     /locus_tag="U0342_002895"
     tRNA            complement(2212..2283)
                     /locus_tag="U0342_002895"
                     /product="tRNA-Gly"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(2249..2251),aa:Gly,seq:gcc)
BASE COUNT          519 a          665 c          493 g          613 t
ORIGIN      
        1 tttccttttc cttagaaagg aggtgatcca gccgcacctt ccgatacggc taccttgtta
       61 cgacttcacc ccaattatct gtcccacctt cggcggctgg ctccataaag gttaccctac
      121 cgacttcggg tgttacaaac tctcgtggtg tgacgggcgg tgtgtacaag gcccgggaac
      181 gtattcaccg tggcatgctg atccacgatt actagcgatt ccggcttcat gtaggcgagt
      241 tgcagcctac aatccgaact gagaatagtt ttatgggatt agctccacct cgcggcttcg
      301 cgaccctttg tactatccat tgtagcacgt gtgtagccca ggtcataagg ggcatgatga
      361 tttgacgtca tccccacctt cctccggctt gcaccggcag tcactttaga gtgcccaact
      421 aaatgctggc aactaaaatc aagggttgcg ctcgttgcgg gacttaaccc aacatctcac
      481 gacacgagct gacgacaacc atgcaccacc tgtcactttg tccccgaagg gaaagctctg
      541 tctccagagt ggtcaaagga tgtcaagacc tggtaaggtt cttcgcgttg cttcgaatta
      601 aaccacatgc tccaccgctt gtgcgggccc ccgtcaattc ctttgagttt caaccttgcg
      661 gtcgtactcc ccaggcggag tgcttaatgc gttagctgca gcactaaggg gcggaaaccc
      721 cctaacactt agcactcatc gtttacggcg tggactacca gggtatctaa tcctgtttgc
      781 tccccacgct ttcgcgcctc agcgtcagtt acagaccaga gagtcgcctt cgccactggt
      841 gttcctccac atatctacgc atttcaccgc tacacgtgga attccactct cctcttctgc
      901 actccagtct tccagtttcc aatgaccctc cccggttaag ccgggggctt tcacatcaga
      961 cttaaaagac cgcctgcgcg cgctttacgc ccaataaatc cggacaacgc ttgccaccta
     1021 cgtattaccg cggctgctgg cacgtagtta gccgtggctt tctggttaga taccgtcaag
     1081 ggacaagcag ttactcttat ccttgttctt ctctaacaac agtactttac gatccgaaaa
     1141 ccttcttcat acacgcggcg ttgctccgtc agactttcgt ccattgcgga agattcccta
     1201 ctgctgcctc ccgtaggagt ctgggccgtg tctcagtccc agtgtggccg atcaccctct
     1261 caggtcggct atgcatcgtt gccttggtag gccattaccc taccaactag ctaatgcacc
     1321 gcgggcccat ctgtaagcga tagccgaaac catctttcaa aagcgtggca tgcgccacac
     1381 tttatcattc ggtattagcc ccggtttccc ggagttatcc ccaacttaca ggcaggttgc
     1441 ccacgtgtta ctcacccgtc cgccactaac tttggaagag caagctcttc ctccgttcgt
     1501 tcgacttgca tgtattaggc acgccgccag cgttcgtcct gagccaggat caaactctct
     1561 ttaaaatata aattgaattt gaatacttat tcaacaccgt gaataagatt ccttgcgtca
     1621 aattgacttc gctagcaatt aaattactag tttgttttgt tgaaaacagc tttctgtttt
     1681 ctgccctgcg attaccagtg agactttacg tctcattgct tttcgtcttc ttctttgttc
     1741 agttttcaaa ggtcactttt tcttcttcgt tgcctttagc agcaactctt atatcttact
     1801 ctattctcta aacaatgtca acacattttt agaaataatt tggtggagcc tagcgggatc
     1861 gaaccgctga cctcctgcgt gcaaagcagg cgctctccca gctgagctaa ggccccataa
     1921 taaaaatcaa acaatcggga agacaggatt cgaacctgcg accccttggt cccaaaccaa
     1981 gtgctctacc aagctgagct acttcccgtt taataaagtg cgcccaagag gagtcgaacc
     2041 tctaaccgct tgattcgtag tcaagtactc tatccagttg agctatgggc gcatataaaa
     2101 ataatgccga ggaccggaat cgaaccggta cggatatcac tatccgcagg attttaagtc
     2161 ctgtgcgtct gccagttccg ccaccccggc atattggaac ttttgtaaac aagcggaaga
     2221 cggggttcga acccgcgacc cccaccttgg caaggtgatg ttctaccact gaactacttc
     2281 cgcatattta
//
LOCUS       DASEAA010000257         2280 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.258, whole genome shotgun sequence.
ACCESSION   DASEAA010000257 DASEAA010000000
VERSION     DASEAA010000257.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2280)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2280)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2280
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.258"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1974
                     /locus_tag="U0342_002896"
     CDS             <1..1974
                     /locus_tag="U0342_002896"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2424215.1"
                     /translation="LTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSG
                     LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIATNNQIS
                     DITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTEL
                     KLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISPVS
                     SLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQE
                     WTNPPVNYKVNVSIPNTVKNVTGALIAPATISDGGSYAEPDITWNLPSYTNEVSYTFN
                     QSVTIGKGTTTFSGTVTQPLKAIFNAKFHVDGKETTKEVEAGNLLTEPAKPVKEGYTF
                     IGWFDAQTGGTNWNFSTDKMPTNDIDLYAQFSINSYTATLDNDGVTTSQTVDYQGLLQ
                     EPTAPTKEGYTFKGWYDAKTGGDKWDFATSKMPAKNITLYAQYSANSYTATFDVDGKT
                     TTQAVDYQGLLKEPKTPTKAGYAFKGWYDEKTDGKKWDFATDKMPANDITLYAQFTKN
                     PVAPPTTGGNTPPTTNNGGNTTPPSANIPGSNTSTGNSASTTSTMNAYDPYNSKEASL
                     PTTGDSYNALYLLIGLLAVGTAVALTKKARASK"
     gene            2059..>2280
                     /locus_tag="U0342_002897"
     CDS             2059..>2280
                     /locus_tag="U0342_002897"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin N-terminal domain-containing protein"
                     /protein_id="HEM2424216.1"
                     /translation="MKEKHNPRRKYCLISGLAIIFSLWIIIGNGAKVQAETITVSTPI
                     KQIFPDDAFAETIKDNLKKKSVTDLVTQNE"
BASE COUNT          834 a          427 c          425 g          594 t
ORIGIN      
        1 ttgacgaatc taactggttt gactttgttc aacaatcaga taacggatat agacccgctt
       61 aaaaacctaa caaatttaaa tcggctagaa ctatctagta acacgattag tgatattagt
      121 gcgctttcag gtttaactag tctacagcaa ttatcttttg gtaatcaagt gacagattta
      181 aaaccattag ctaatttaac aacactagaa cgactagata tttcaagtaa taaggtgtcg
      241 gatattagtg ttctggctaa attaaccaat ttagaaagtc ttatcgctac taacaaccaa
      301 ataagtgata taactccact tgggatttta acaaatttgg acgaattatc cttaaatggt
      361 aaccagttaa aagatatagg cacattggcg agtttaacaa accttacaga tttagattta
      421 gcaaataacc aaattagtaa tctagcacca ctgtcgggtc taacaaaact aactgagtta
      481 aaactgggag ctaaccaaat aagtaacatc agtcccctag ctggtctaac cgccctcact
      541 aacttagagc taaatgaaaa tcagttagaa gatattagcc caatttctaa cttgaaaaat
      601 ctcacatatt taacgttgta ctttaataat ataagtgata taagcccagt ttctagttta
      661 acaaagcttc aaagattatt tttctataat aacaaggtaa gtgacgtaag ctcgcttgcg
      721 aatttaacca atattaattg gctttcggct gggcataacc aaattagcga tcttacacca
      781 ttggctaatt taacaagaat tacccaatta ggattgaatg accaagaatg gacaaatcca
      841 ccagtgaact acaaagtaaa tgtatccatt cccaacacgg tgaaaaatgt gacgggcgct
      901 ttgattgcac cagctactat tagcgatggc ggtagttacg cagaacctga tataacatgg
      961 aacttaccta gttataccaa tgaagtaagt tataccttta atcaatctgt caccattgga
     1021 aaaggaacga caacatttag cggaacagtg acgcagccac ttaaggcaat ttttaatgct
     1081 aagtttcatg tggacggcaa agaaacaaca aaagaagtgg aagctgggaa tttattgact
     1141 gaaccagcta agcctgtaaa agaaggttac acatttattg ggtggtttga tgcccaaacc
     1201 ggcggaacta actggaattt cagtacggat aaaatgccga caaatgacat cgatttatat
     1261 gcgcaattta gtattaacag ctacacagca accttggata atgacggtgt aacaacatct
     1321 caaacagtag attatcaagg cttgctacaa gaacctacgg caccaacaaa agaaggttat
     1381 acttttaaag gctggtatga cgcaaaaact ggcggtgaca agtgggattt tgcaactagt
     1441 aagatgcctg ctaaaaacat caccttatat gctcaatata gcgccaatag ctatacagca
     1501 acctttgatg ttgatggaaa aacaacgact caagcagtag actatcaagg acttctaaaa
     1561 gaaccaaaaa cgccaacaaa agccggatat gctttcaaag gttggtatga cgaaaaaaca
     1621 gatggtaaaa aatgggattt tgcgacagat aaaatgccag caaacgatat tacgctgtac
     1681 gctcaattca cgaaaaatcc tgtggcacca ccaacaactg gagggaacac tccgccgact
     1741 acaaataacg gagggaacac tacaccacct tccgcaaata tacctggaag caacacatca
     1801 actgggaatt cagctagcac aacaagtaca atgaacgctt atgaccctta taattcaaaa
     1861 gaagcttcac tccctacaac tggcgatagc tataatgcgc tctacctgtt gataggattg
     1921 ttagcagtag gaactgcagt ggctcttact aaaaaagcac gtgctagtaa atagaagtag
     1981 tgtaaagagc tagatgtggt tttcggacta tatctagctt ttttattttt taataactag
     2041 aatcaaggag aggatagtgt gaaagaaaag cacaacccaa gaaggaaata ttgtttaatc
     2101 tcaggtttag ctattatttt tagtttatgg ataattattg gaaacggagc gaaagtacaa
     2161 gcggagacta tcaccgtgtc aacgccaatc aagcaaattt ttccagatga tgcttttgca
     2221 gaaacaatca aagacaattt aaagaaaaaa agtgtgacgg atctagtgac acaaaatgaa
//
LOCUS       DASEAA010000258         2259 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.259, whole genome shotgun sequence.
ACCESSION   DASEAA010000258 DASEAA010000000
VERSION     DASEAA010000258.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.259"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..307
                     /locus_tag="U0342_002898"
     CDS             <1..307
                     /locus_tag="U0342_002898"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724917.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424217.1"
                     /translation="ENQEYTFEYPIQTLREDKNHVYVLLDIPANQEYTFDDFHNIYAF
                     SYTGERKWQIGERPVGDNDVYTLINVKEGILYATDFSGRKYKVCEKNGIPEKMEIVK"
     gene            433..774
                     /locus_tag="U0342_002899"
     CDS             433..774
                     /locus_tag="U0342_002899"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724918.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424218.1"
                     /translation="MKKLQWLTNRLFATSILLITTLFIIPPTFAIADGSKVSFYEYIY
                     GAPFRWLTVISTTDKKGAFTEMFFSGNEGITIQWPNLMINFLLIFLAITIIFSLAKKL
                     YDKKNVKKDNP"
     gene            complement(841..1209)
                     /locus_tag="U0342_002900"
     CDS             complement(841..1209)
                     /locus_tag="U0342_002900"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2424219.1"
                     /translation="MAFSIGEFSELVGIPSSTLRFYEKEGLITPDRDKNNLRIYSEED
                     ANWLKFLLHLKGAGLSVEELKQYTIWRAAGDSTISERLNMLKKKKVILEQEIEDLQKN
                     LDTVVRKIGIYEEKVKTRRV"
     gene            complement(1265..2248)
                     /locus_tag="U0342_002901"
     CDS             complement(1265..2248)
                     /locus_tag="U0342_002901"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463617.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aldo/keto reductase"
                     /protein_id="HEM2424220.1"
                     /translation="MKKRQLGNTGLVTSELGFGCMGLNYHWGPAKDRKEMIEVVRTAM
                     DTGITMFDTAEVYGPYTNEELVGEALVGKRNHVQIATKGGFKINGLNNEVDSRPESIK
                     AAVEGSLKRLKTDYIDLYYIHRIDPSIPIEEVAGTIQNLKQEGKILHWGLFEASAKTI
                     RRAHKVEPLAAVENEYSIWWREAEKEIFPVLEELGIGLVAYSPLGRGYLTGKLDINAN
                     FNENDNRGGLPRFQKEAMEANQVLLDFMKEIADEQNVTTAQLAIAWILDQKPWIVPIP
                     GTTKQSRIKENIASTDIRFDDGARQKIADALSQIEIVGDRYSAAENKRIGK"
BASE COUNT          657 a          456 c          394 g          752 t
ORIGIN      
        1 tgaaaaccaa gaatacacat ttgagtatcc aatacaaact ttgagagaag ataaaaatca
       61 tgtatatgtt ttattagata taccagccaa ccaagaatat acgtttgatg attttcataa
      121 tatttatgct ttttcttata cgggtgaacg gaaatggcaa ataggagaga gacccgttgg
      181 agataatgat gtttatactt tgattaatgt aaaagaagga atactttacg ctacagattt
      241 tagcggaaga aaatataaag tttgtgaaaa aaatggaatt cctgaaaaaa tggaaattgt
      301 aaaataaaaa atacatttta ctgtctcgtt cagaaccctt gcaacccata tttaaaaagg
      361 gcctaaatgt tttagcaatg tttttataaa atcccaaatt ggaaaaccaa ccttcaccca
      421 aaaggagcta acatgaaaaa actacaatgg ctaactaacc gattatttgc aacctctatc
      481 ctcctaatca ccacgttatt tatcataccc ccaacatttg cgatagctga tggaagtaaa
      541 gtgagttttt atgaatacat atatggagca ccttttagat ggctaactgt aattagtacg
      601 acagataaga aaggtgcatt tacggagatg tttttctcgg gaaacgaggg tataactatc
      661 caatggccca atctaatgat aaactttctc ttaattttcc ttgcaataac tattatcttt
      721 tccctagcaa aaaagcttta cgataaaaag aacgtcaaaa aagacaaccc ataacaggtt
      781 gtctttttct atatgctgtt gtaaatggtc tcttactgta cacgagaaaa attcacctag
      841 ctaaactcgt ctagtcttaa ccttctcttc ataaatccca atcttcctaa ccactgtatc
      901 caaattcttc tgcaagtctt caatctcttg ctccaaaata acctttttct tttttaacat
      961 atttaatcgt tcggaaatag tgctgtctcc tgctgcgcgc caaattgtgt actgctttaa
     1021 ttcttctacc gataacccgg cgccttttaa gtgcagtaaa aattttagcc aattggcgtc
     1081 ttcttcgctg tatatgcgca aattattctt gtcgcggtca ggggttatta agccttcttt
     1141 ttcgtagaat ctaagggtgc tactgggaat gcctactagt tcggaaaatt caccgataga
     1201 aaaagccatt taatcacctc atctgtgtgt ttttcataag gataccattt tgaataggaa
     1261 atgcctactt tccgatgcgt ttattttcag ctgctgagta tctatcacca acaatttcaa
     1321 tctgcgataa agcatcagct attttttgtc gtgctccgtc atcaaaacga atgtccgtgg
     1381 aggcgatatt ttctttaatt ctgctttgtt ttgttgttcc gggaattggc acgatccaag
     1441 gtttttggtc aagtatccaa gcgatggcga gttgtgccgt tgtgacattt tgctcgtcgg
     1501 ctatttcttt cataaaatcg agtagtactt ggttggcttc catggcttct ttttggaatc
     1561 ttggtaagcc accgcggttg tcgttttcat tgaagttagc atttatatcc aatttgccag
     1621 ttaaataacc gcgacctagt gggctgtatg cgacaagccc gatgccaagt tcttctaaaa
     1681 ccggaaatat ttctttttca gcttctcgcc accagatgga atactcattt tcaacagcag
     1741 ctagtggctc tactttatga gcacggcgta ttgtctttgc gctggcttcg aaaagtcccc
     1801 agtgtagaat ttttccttct tgttttaaat tctgaatggt tccggcaacc tcttcaattg
     1861 ggatagaggg gtcaattcta tgaatgtaat ataaatcaat gtaatccgtt tttagccgtt
     1921 tgagagagcc ttcaaccgcg gccttgatgc tttctggacg gctatcgact tcgttattta
     1981 aaccattaat tttaaaacca ccttttgttg caatttgaac atggtttctt ttgccaacta
     2041 aagcttctcc gacaagttct tcattagtat aaggtccgta cacttcagca gtatcgaaca
     2101 tcgtaatccc tgtatccatt gcagtgcgta cgacttcaat catttctttt ctatctttcg
     2161 caggtcccca gtgataattg agtcccatac agccgaatcc aagctctgaa gttactaaac
     2221 cagtgtttcc taattgtctc tttttcataa aaatatgct
//
LOCUS       DASEAA010000259         2259 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.260, whole genome shotgun sequence.
ACCESSION   DASEAA010000259 DASEAA010000000
VERSION     DASEAA010000259.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2259
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.260"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1643
                     /locus_tag="U0342_002902"
     CDS             <1..1643
                     /locus_tag="U0342_002902"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464143.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycerophosphodiester phosphodiesterase"
                     /protein_id="HEM2424221.1"
                     /translation="YYFFFFILRVIGVPGITDANLGEVFSSPVAVIMLLILALLILLF
                     IYYELGFFIMMAIYQLRGESYTVFKIIQRLNVKAKYFLSYQAIYFLLYFFLLLPIAGL
                     SLPITITENLYLPHFITDELMKTTTGTWLYVIAIAIIFYISARLVFALPYFIEDKSLK
                     ISGAIRKSWKYPQKNLFFMLLKWVLIIVAIGFLVSIIATIMMLPLLLIEKITPGIAVF
                     IAGITLTILQVIGFFAAGIFQGIIAQLLVKNAFAIEGQPALVTRNQFPHKKRFIIVAI
                     IVFIIFSSFNIYTVNATLYEPNTKIIAHRGDTMNAVENTVEAIESAAEAGADYSEIDI
                     QETKDHQFVVFHDMTLRRLAGSSKRVADMTLNELQQTKVKSGDYSSHIASFDEIIKTA
                     KRNKIDLLVEVKLHGGESSDMVERLVTLLKKEKVTDKYLVQSLDQPVIEKIEQADPTL
                     ETGIILALNIGNLPKTSADFIVLEDFSINKRLLTQARQNNKRVFVWTVNKEKLMQMYL
                     RKNVDGIITNYPKKAIELRESFNENDSLRSRIENRLGF"
     gene            complement(1682..2176)
                     /locus_tag="U0342_002903"
     CDS             complement(1682..2176)
                     /locus_tag="U0342_002903"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464144.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF5067 domain-containing protein"
                     /protein_id="HEM2424222.1"
                     /translation="MKKLKSVLLLMGIVTFALALTACGGTEDKASTEKTETAKADTKK
                     KANPNELGDYKVEILSSEVVKDFEGNNAIAIKTKFTNNSKENISFMVAIDQQAFQNGT
                     QLETTVSADASMGGSEKDVQPGGTLEVTELYKLQDTQNKVDVEAKELISFSKNAVKKS
                     FELK"
BASE COUNT          689 a          380 c          414 g          776 t
ORIGIN      
        1 tttattattt ctttttcttt attctccgag tcatcggagt gccaggaatt acagacgcca
       61 atcttggaga agttttttcg agtcctgttg ccgttattat gctgctgatt ttagctttac
      121 tcattttact gtttatatat tatgaactgg gtttctttat aatgatggca atttatcaat
      181 tgcggggaga aagctatacc gttttcaaaa tcatacaaag actcaatgta aaagcgaaat
      241 actttcttag ttatcaagca atttattttc tgctatattt ctttttactt ttgcccattg
      301 caggattatc tttaccaatt acgataacag aaaacctcta tttaccacat tttattacgg
      361 atgaattaat gaaaacgacg acgggaacgt ggctgtatgt tattgcaatt gcgattattt
      421 tctatattag cgccagactt gtgtttgctt tgccctattt cattgaagac aaatcactaa
      481 aaataagtgg ggctatccga aaaagttgga aatacccgca aaaaaactta tttttcatgt
      541 tactaaaatg ggttttaata attgttgcga ttggcttttt agtatcgatt atcgcaacga
      601 ttatgatgtt gccgcttctc ttaatagaaa aaataactcc gggaattgcg gtgtttatag
      661 cgggtattac tttaaccata ctacaagtga taggtttctt tgccgctgga atttttcaag
      721 gaatcattgc gcaattatta gtgaagaacg cctttgctat agaaggacaa ccagcacttg
      781 tgacgcgcaa ccagttcccg cataaaaagc gatttattat tgtagcgata atcgttttca
      841 ttatttttag tagttttaat atttatacag tgaatgcgac tttatatgaa cctaacacga
      901 aaataatcgc ccatcgaggt gatacaatga atgctgttga aaatacggtg gaagccattg
      961 aatcagctgc tgaggctggg gcagattaca gcgaaattga tattcaagaa accaaagatc
     1021 atcagtttgt cgttttccat gatatgacac tgagaagact tgctggcagt tctaaacgag
     1081 tagcagatat gactttaaac gagttgcagc aaactaaagt gaagagtggc gactattcgt
     1141 ctcatatagc ttctttcgat gaaattatta agacggcgaa aaggaataag atagatttac
     1201 tcgtggaagt gaagttgcat ggcggggaat ctagcgatat ggtggaacga cttgtcacat
     1261 tgttaaagaa agaaaaagta accgataaat atctagtcca atcgttggac caaccagtta
     1321 tcgaaaaaat agaacaagct gaccctacgc ttgaaactgg catcatatta gcgcttaata
     1381 ttggaaactt accaaaaaca tctgccgatt ttattgtttt agaagatttt tctattaata
     1441 aacgattact tacacaagcc agacaaaata ataaaagggt gtttgtttgg acggtaaata
     1501 aagaaaaact aatgcaaatg tatttgcgaa agaatgtaga tggaatcatt accaattatc
     1561 ctaaaaaggc gatagagctt agggaatctt ttaatgaaaa tgattctttg cgaagtcgta
     1621 ttgaaaatag gttaggcttt taaataaaaa gccgcaaaca agcactgttt gcggctgatt
     1681 tttattttag ttcaaatgat tttttaacag cgtttttgct gaaactaatt aattcttttg
     1741 cttctacatc gactttattt tgtgtatctt gtagtttata aagctcagtt acttctaaag
     1801 ttccaccagg ttgtacgtct ttttcagagc cgcccatact agcatcagct gatacggttg
     1861 tttctaactg agtgccattt tgaaaagctt gttgatcaat agctaccata aaagaaatgt
     1921 tttctttgct gttatttgtg aatttagttt taattgcgat ggcattgtta ccttcaaaat
     1981 ccttaactac ttccgaacta agaatttcta ctttataatc tccaagttca tttggatttg
     2041 ctttcttttt cgtatcggct ttagctgttt ctgttttttc tgtacttgct ttatcctcag
     2101 tcccaccaca tgcagttagt gctagggcaa aagtaacaat ccccattaat agtaaaacgc
     2161 ttttcaattt tttcattttc ttctctcctt cattttttat ctgtctctat tagaccatgt
     2221 ggagagaata aaagtcctat gcagtgggca taggactag
//
LOCUS       DASEAA010000260         2235 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.261, whole genome shotgun sequence.
ACCESSION   DASEAA010000260 DASEAA010000000
VERSION     DASEAA010000260.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2235)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2235)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2235
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.261"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..929)
                     /locus_tag="U0342_002904"
     CDS             complement(<1..929)
                     /locus_tag="U0342_002904"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743966.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="BppU family phage baseplate upper protein"
                     /protein_id="HEM2424223.1"
                     /translation="MTALRKINATLDLNRKSWNIERIEAVQGDIDSLMIAVQIVENGK
                     LKDLTDYKPTFAVVLPGTVKYVIDDLHFSNEKMNEGYFEYTFVKEAFSVPGVYDTARF
                     ILQNEDGTELSGMPRFTYYVEKDPLQGKVVAESYISDFERLEQMIHAVELEIAELHDE
                     VTSESVRLDSEIAALDEKINTETSKLQSEADDLQQQFDNLNPAQFAQKTVLDEHVNDA
                     DIHVTATDKTNWNAKETVEGAQAKADKALADAKAFFELSSSVQSVTLTPKNGFVASQP
                     LIARYIKFGNRFLVIVSGIVGKGTGSGTGICAT"
     gene            complement(926..>2235)
                     /locus_tag="U0342_002905"
     CDS             complement(926..>2235)
                     /locus_tag="U0342_002905"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2424224.1"
                     /translation="NKTDIPEMNIKVSFEPLSEMTGYEKYKNLEAVELGDTVTVYHPD
                     LNVNITAKAVRTKYNVITEKYEEIELGSIKADFTDTLKSDISKIIDEVPTQDWMQNEL
                     KAIGDSIQGANGGNIYTFPTFKPSTMYFMDTDNVNTAKKVMVMNREGIAFYQNGITGI
                     PKTAWGIDGKFVADWIGTGTLRAIDIEGVSITGSSGFFDTLYSSFLPGLPAPQYKEEL
                     KMGGGVGFHLTAKSVTKPYPALQMRMNTNGDLGLAIEAVNENTGAIDADRVVRLSPFA
                     GIETPLIQSDGWCCIGANSDGKTASIDRHTWISGGGPQLRYVPHRASNFETASSEEYK
                     KNIRKVKKTAFGKTAKQVINETDVFTYSHIADETNEKKIGFIAEQASDSLTTADGKAI
                     DLYNSVAWLYQYAKENEEEKEALKAEVKELKNLVNKLVNEVSK"
BASE COUNT          602 a          486 c          345 g          802 t
ORIGIN      
        1 aacgttgcgc atatgccagt tccacttcca gtccctttgc ctacaattcc gctaacaatg
       61 actagaaacc gattgccaaa cttaatgtat cgagctatta aaggctgact tgcaacaaat
      121 ccgttcttcg gcgtcaaagt aacactttgt acagagctag atagttcaaa aaaagctttt
      181 gcatcagcaa gtgctttatc tgctttagcc tgcgcgcctt ctactgtttc ttttgcattc
      241 cagtttgttt tatcagtcgc tgtgacatga atatcagcat cattaacatg ttcatccaaa
      301 acagtttttt gtgcgaattg agcgggattt aagttatcaa actgctgttg caagtcatct
      361 gcttcacttt gaagcttact agtttctgta ttgatttttt catcaagtgc cgcaatttca
      421 ctatctaaac gcacgctttc acttgtcact tcatcatgta gttcagcaat ttctaattct
      481 acagcatgta tcatttgttc taatctctcg aaatcactta tatagctttc tgctactact
      541 tttccttgca acgggtcttt ttcaacataa tacgtaaaac gaggcatacc agatagctct
      601 gtcccatctt cattttgcaa aataaaacgg gctgtatcat acactcccgg aacagaaaat
      661 gcttctttta caaatgtgta ttcgaagtaa ccttcattca ttttttcgtt actaaaatgt
      721 aaatcgtcaa ttacatattt gaccgtgccc ggtaaaacta ccgcgaacgt tggcttataa
      781 tctgttaagt ctttcaattt accgttttcg acaatttgaa ctgctatcat cagagaatca
      841 atatcacctt gaactgcttc aatgcgctca atattccaag attttctatt taagtctaat
      901 gttgcgttta tttttcttaa agcagtcatt tactcacctc gtttactaat ttatttacta
      961 agtttttcaa ctcttttacc tctgctttta atgcttcttt ttcttcttcg ttttcttttg
     1021 cgtattgata tagccacgca acagaattat ataagtcaat tgcttttccg tcggctgtag
     1081 tcagcgaatc agaagcttgt tcagctataa atccgatttt cttttcgttt gtttcatcag
     1141 caatatgcga ataagtgaaa acatctgttt cgtttatgac ttgcttagct gttttaccaa
     1201 acgcagtttt ctttacttta cgtatatttt tcttatattc ttctgaacta gcagtctcaa
     1261 aattactagc tcgatgcggc acataacgta attgtggacc gccaccggaa atccaagtat
     1321 ggcgatcaat agaagcggtt ttaccatcag aattagcacc aatacagcac caaccgtcgc
     1381 tttgaattaa aggtgtttca attcccgcaa aaggggacag tctaacaacc ctatcagcat
     1441 ctatcgcacc cgtattttca ttcacagctt caatagcaag ccctaaatct ccattcgtgt
     1501 tcattctcat ttgcagagcg ggataaggtt ttgtcaccga ttttgcggtt aaatggaaac
     1561 caacacctcc gcccattttc agttcttctt tatattgagg tgctgggaga cctggtaaaa
     1621 aacttgaata caatgtgtca aaaaaacctg atgagcctgt tatgcttacc ccttcaatat
     1681 cgatagccct taaggtccct gttccaatcc aatcggcaac aaatttacca tctattcccc
     1741 atgcggtttt aggaatgccg gttatcccat tttgataaaa cgctatacct tctctgttca
     1801 taaccatcac tttttttgca gtattcacat tgtcagtgtc cataaaatac atggtcgaag
     1861 gtttaaatgt tgggaaagta taaatgttac ctccgtttgc gccttggata ctatctccta
     1921 ttgcttttaa ttcattctgc atccaatcct gagtcggaac ttcgtcgata attttgctta
     1981 tatctgattt taacgtgtct gtaaaatcag ctttaatgct gccaagttct atttcttcat
     2041 atttttcagt aataacatta tattttgttc gaacagcttt tgcagttata tttacgttta
     2101 aatctggatg ataaactgtg actgtgtctc ctaactcgac tgcttccaaa tttttatatt
     2161 tttcataacc tgtcatttca gaaagtggct caaaagatac tttgatattc atttctggta
     2221 tatctgtctt attat
//
LOCUS       DASEAA010000261         2232 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.262, whole genome shotgun sequence.
ACCESSION   DASEAA010000261 DASEAA010000000
VERSION     DASEAA010000261.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2232)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2232)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2232
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.262"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            180..1100
                     /gene="mogR"
                     /locus_tag="U0342_002906"
     CDS             180..1100
                     /gene="mogR"
                     /locus_tag="U0342_002906"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464201.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="motility genes transcriptional repressor MogR"
                     /protein_id="HEM2424225.1"
                     /translation="MPKSEIRKLLQEIKKQVDNPGNSSTTEIKKMASEAGIDEKTAEE
                     IYHLLTEFYQAVEEHGGIEKYMHSNISWLKIELELLSACYQIAILEDMKVLDISEMLS
                     LNDLRIFPKTPSQLQNTYYKLKKELIQVEDIPKNKPGRKRKTQKNTKKEKTNIFGKVV
                     PAEFKAPTSIKEQISYDKSREKNLVDLLSGVKSNVQLLSENQGEENNVYDLLKSIYSL
                     SSLAVQKEELDKKYQDLQTKCQELEQENSYLKQQNETMTDSFHTLVLQVADFAYASDL
                     DQIQALPLFSQQLVVTLNQLGVFKENYKQM"
     gene            1119..1328
                     /locus_tag="U0342_002907"
     CDS             1119..1328
                     /locus_tag="U0342_002907"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464200.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424226.1"
                     /translation="MYIEIYTVNGESIRLDDDAKINNISIHELSKADLKNLFNEKCIE
                     LTKYDLTYFINTNQVNWFLVSEGIH"
     gene            complement(1367..1795)
                     /locus_tag="U0342_002908"
     CDS             complement(1367..1795)
                     /locus_tag="U0342_002908"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464199.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF805 domain-containing protein"
                     /protein_id="HEM2424227.1"
                     /translation="MGFLEAYKSFWRNYVNFSGRAPRSAYWYVVLWNVIIFVILYALA
                     FIFGISAIMEAAMGGTGMAGGGGAIVLVIILWLYLLAALLPTISLMVRRLHDSGKSGF
                     FVLLSLIPFAGGIIMLIFMCLESDGPNQYGDGDIDSKFDF"
BASE COUNT          873 a          436 c          308 g          615 t
ORIGIN      
        1 gtatcaaagg aaaacttctc attattcgat ttatattttt ctatttaact cgaaaaaagg
       61 ttcttcatac ccaatccttt tgacctactc gcgttccctt tacacaacta acatatattg
      121 ttattataaa aataaacaga aaatcaataa tactatagga tagagaggta tgtgattgta
      181 tgcctaaatc agaaataaga aaattacttc aagaaatcaa aaaacaagta gataatccgg
      241 ggaattcatc tacaactgaa attaaaaaaa tggcttcaga agctggcatt gacgaaaaaa
      301 ctgccgaaga aatctaccat ttactcactg aattttatca agccgttgaa gaacacggtg
      361 gaatcgaaaa atatatgcat tccaatatta gttggttaaa aatcgaatta gaactacttt
      421 ccgcatgtta ccaaattgct attttagaag atatgaaggt tcttgatatt tctgaaatgc
      481 tcagcctaaa tgatttgcgg atttttccaa agactccaag ccaactacaa aatacttact
      541 acaaactaaa aaaagagctt atccaagtag aagatattcc gaaaaacaag cctgggagaa
      601 aaagaaaaac acaaaaaaat acaaaaaaag aaaaaaccaa tattttcggc aaagttgtgc
      661 cagctgaatt caaagcacca acgtccatca aagaacaaat cagctacgac aaatcacgcg
      721 aaaaaaactt ggttgattta ctttccggcg ttaaaagcaa tgttcaactt ttaagcgaaa
      781 accaaggtga agaaaacaac gtatatgact tactaaaaag catttactca ctctcttccc
      841 ttgctgttca aaaagaagaa ctcgacaaaa aataccaaga cttacaaaca aaatgccaag
      901 aattggaaca ggaaaattcc tatttaaaac aacaaaacga aaccatgaca gattcgttcc
      961 atacacttgt gttacaagta gctgatttcg cttatgccag tgatttagac caaatccaag
     1021 cactgccact tttcagccag caactcgttg taacactgaa tcaacttggt gtattcaaag
     1081 aaaattataa acaaatgtaa tttagaaggg gtggcacgat gtatatcgaa atttataccg
     1141 taaatgggga atctattcgc cttgacgacg acgcaaaaat caacaacatc agcatccacg
     1201 aattatcaaa agcagacttg aaaaaccttt ttaacgaaaa atgtatcgag ttaacgaaat
     1261 acgacttaac gtattttatt aataccaacc aagtgaattg gttccttgta agcgaaggaa
     1321 tccattaaaa aaacgagcta ggattatctc ttagctcgtt ttctatttaa aaatcaaatt
     1381 tactatctat atccccatca ccatattggt ttggtccatc actttcaaga cacataaaaa
     1441 ttaacataat aattccgcca gcaaatggaa taaggcttaa aaggacgaaa aatccacttt
     1501 tgccagaatc atgtaagcgt cgaaccatta agctgattgt tggaagtaaa gccgctagca
     1561 agtatagcca taaaatgatt accagaacga ttgcaccgcc accgccagcc attcccgtac
     1621 cacccatagc tgcttccata atagctgaaa taccaaaaat aaaagctaaa gcataaagta
     1681 ttacaaaaat aataacattc caaagtacta cataccaata cgccgatctc ggggctctgc
     1741 cactaaagtt aacgtaattt ctccaaaatg atttgtaagc ttctaaaaat cccatatttc
     1801 ctcctatgta aataaatttc accgtatcta taaggatata tgtagccatc ccattacaca
     1861 agctcttaca ataaagattc ataaaataga cacatttcta tttttaattg aaaatgtgtc
     1921 tattttcaca ggcctttaaa cctattagac ctccaaacta tagattttta atacatatca
     1981 gcaataaaac tttacacaaa atccacccat tgatgattgc gagaaataat cactaaaata
     2041 taaaataccc caaaatgtta ttgaggtatt ttagttaaac tctacttatt ttttaatttg
     2101 gtaatcactt tggtaataac atacactgct aaaactaaaa cagctataag cattaaagat
     2161 cccatgatgt taaaattgct caaccttcta tcacctcttt aaatcccgcg taaattaaat
     2221 atacttgatg ag
//
LOCUS       DASEAA010000262         2223 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.263, whole genome shotgun sequence.
ACCESSION   DASEAA010000262 DASEAA010000000
VERSION     DASEAA010000262.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2223)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2223)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2223
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.263"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            441..1190
                     /gene="rpsB"
                     /locus_tag="U0342_002909"
     CDS             441..1190
                     /gene="rpsB"
                     /locus_tag="U0342_002909"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465183.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="30S ribosomal protein S2"
                     /protein_id="HEM2424228.1"
                     /translation="MPVISMKQLLEAGVHFGHQTRRWNPKMKKYIFTERNGIYIIDLQ
                     KTVKKVDEAFNFMREVASDNGTILFVGTKKQAQESVRDEAIRSGQYFVNHRWLGGTLT
                     NFETIQKRIQHLKKIERMEADGTFEVLPKKEVVLLKKEQEKLERFLGGIKDMKGLPDA
                     LFIVDPRKERIAVAEARKLHIPIIGIVDTNCDPDEIDYVIPANDDAIRAVKLLTAKMA
                     DAIIEVNQGEELTEAEVAPVEEKATEETTEA"
     gene            1270..2154
                     /locus_tag="U0342_002910"
     CDS             1270..2154
                     /locus_tag="U0342_002910"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465182.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="elongation factor Ts"
                     /protein_id="HEM2424229.1"
                     /translation="MANITAQMVKELREKTGAGMMDCKKALVETEGDMEKAIDYLREK
                     GIAKAAKKSDRVASEGMTHVISNEKHAVVLEVNAETDFVAKNDNFQQLVDALAKQILA
                     VRPDSLEDALKTEMPNGQTVQDYITEAITKIGENISLRRFEVKEKADNSAFGEYIHMN
                     GRIGVLTLLEGTTDTTVAKDVAMHIAAINPKYISREDVSTEEVEHEKEVLTQQALNEG
                     KPANIVEKMVEGRLKKYLSEISLEDQPFVKNPDITVGDYVKQSGGKVVSFVRFEVGEG
                     IEKKEDNFVEEVMSQVKK"
BASE COUNT          818 a          374 c          438 g          593 t
ORIGIN      
        1 aacaggcaat aaaataagtt tgactcctat aggtcactta gttcaatttt acttgggaat
       61 attaaatgac atgaaagcac tacatcgctt tattttaatt aaatgttata ttgagataaa
      121 caaaaagata ttttaacaat gttggaaatg ccttatgaaa ttgcgcaatt taaaagaata
      181 aaaaaacatg gtgttcttag tttagccgaa aagcttgaaa tgattgttga aaaaaattag
      241 ttatcgaaga aagaagatat gtaccacggg ttgcatattt cctgttttta tggtatatta
      301 ggaaacggtg ttaaatcaca cacgcacggt gacagactga gaaggtgctt aacgacttgt
      361 tcgcttaagt ttttcagctg gttgatccat gcggagggcg gttatccgca aaaaataaac
      421 caataggagg gaataacaca atgcctgtta tttcaatgaa acaattactc gaagcaggag
      481 ttcacttcgg ccaccaaacg cgccgttgga acccaaaaat gaagaaatat atcttcacag
      541 aaagaaatgg tatttatatc attgacctac aaaaaacagt gaaaaaagta gacgaagctt
      601 tcaacttcat gcgtgaagta gctagcgaca acggaactat cctgtttgta ggaactaaaa
      661 aacaagctca agaatccgtt cgcgacgaag ctatccgttc tggacaatat ttcgtgaatc
      721 atcgttggtt aggtggtact ttaactaact ttgaaactat tcaaaaacgt attcaacacc
      781 ttaaaaaaat cgaaagaatg gaagcagatg gaacttttga agtccttcct aaaaaagaag
      841 ttgtccttct taaaaaagaa caagaaaaat tagaacgctt cttaggcgga atcaaagaca
      901 tgaaaggtct tcctgatgca ttattcatcg ttgacccacg caaagaacgt attgcggttg
      961 cagaagctcg taaacttcat attcctatca tcggtattgt tgatacaaac tgtgatccgg
     1021 atgaaatcga ctacgtaatc cctgcaaatg atgacgctat ccgcgcggtt aaacttttaa
     1081 ctgctaaaat ggctgacgct atcattgaag tgaaccaagg ggaagagtta acggaagcgg
     1141 aagttgctcc tgtagaagaa aaagctacag aagaaactac tgaagcataa gattttattt
     1201 gaaactttca aggtgataag gcactattct tatcaccttt tttaaagaga aaaattggag
     1261 ggaaaataaa tggctaatat tacagctcaa atggtaaaag aattacgcga aaaaactggt
     1321 gctggtatga tggattgtaa aaaagcactt gtagaaacag aaggagatat ggaaaaagca
     1381 attgactatc ttcgtgaaaa aggaatcgct aaagctgcga aaaaatctga tcgtgttgct
     1441 tctgaaggta tgactcatgt aatcagcaat gaaaaacatg ccgtagtact tgaagtaaat
     1501 gctgaaacag atttcgttgc taaaaacgat aacttccaac aattagttga cgctttagct
     1561 aaacaaattc ttgcagttcg tccagatagc ttagaagatg cgcttaaaac agaaatgcct
     1621 aatggtcaaa ctgttcaaga ctacatcact gaagcaatta caaaaatcgg tgaaaacatt
     1681 tcccttcgtc gttttgaagt aaaagaaaaa gcagacaact ctgctttcgg tgaatacatc
     1741 cacatgaacg gacgtattgg tgttcttaca cttcttgaag gaactactga tactactgtt
     1801 gcaaaagacg ttgcaatgca catcgctgca atcaacccta aatacatttc tcgtgaagac
     1861 gtttctactg aagaagtgga acacgaaaaa gaagtattaa ctcaacaagc gttaaacgaa
     1921 ggcaaaccag ctaatatcgt tgaaaaaatg gtagaaggcc gtttgaaaaa atatctaagc
     1981 gaaatttcct tagaagacca acctttcgtt aaaaacccag acatcactgt aggtgactac
     2041 gtgaaacaaa gcggtggtaa agttgtatca ttcgtacgtt tcgaagtagg cgaaggaatc
     2101 gagaaaaaag aagataactt tgttgaagaa gtaatgagcc aagtgaaaaa ataaatccac
     2161 tttaaatcga ttttatatga tatcaaaacc ccgtattttc ttaggaaata cggggttttt
     2221 att
//
LOCUS       DASEAA010000263         2206 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.264, whole genome shotgun sequence.
ACCESSION   DASEAA010000263 DASEAA010000000
VERSION     DASEAA010000263.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2206)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2206)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2206
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.264"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            220..768
                     /locus_tag="U0342_002911"
     CDS             220..768
                     /locus_tag="U0342_002911"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:YP_008475631.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="biotin transporter BioY"
                     /protein_id="HEM2424230.1"
                     /translation="MRDQKLKFLVVDALFAVIIALLAQVAIPLGPIPLTGQTFAIGLA
                     ATILGARHGTISVLVYIVLGAVGIPVFQGMTAGIGILFGPTGGFIVGFIFNALLTGWL
                     LEKTKFTVPYAIVANILGAIVTLIFGVLWLKVSTGLDWPTAFLTGMVPFIIPGIIKAV
                     FAALLGILIRDRLIKAKLLRAS"
     gene            844..1545
                     /locus_tag="U0342_002912"
     CDS             844..1545
                     /locus_tag="U0342_002912"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464125.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424231.1"
                     /translation="MSLLNEENSFYNVDLLNLLKDSSEAVLPYKRIRFRRNQQILAEG
                     AETDYFYIIEDGVVSMSKNTCKEDSIINFLGKQECIGPLTLLGGAKSPVNYTTISEVS
                     VYQFERKYVLNKFLSSPDVFWQMNALMQSMVTPMLEREGYVNLPSSEKVLAGLIACGE
                     RFGRIESDGSCLIPYYFTQKILGNYLNLARAYVATNLRKLEEDGIIALSPKPWRVNNF
                     EIHKQKLKENHEPYI"
     gene            complement(1634..2161)
                     /locus_tag="U0342_002913"
     CDS             complement(1634..2161)
                     /locus_tag="U0342_002913"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464124.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HdeD family acid-resistance protein"
                     /protein_id="HEM2424232.1"
                     /translation="MKTFTRILVLLAGIAMIILGVWFLFHPGISLLTSTLMFGFLLLI
                     SGIFHTISYFSDRKSQNVSGWVLADGILSILLGFLLLFNEFDGTLTLVLLFGMWVLFA
                     GIMRTIGAFTAKQNNVQGWGWILTIGIIGIIVGFIALFNPVVSAIGIVLVVAIFFIVQ
                     GIGAIATFFFIGKNS"
BASE COUNT          701 a          385 c          407 g          713 t
ORIGIN      
        1 tttttgaact gtgggttaac ctccatgcta actcctccat tctgttatat tgcacactag
       61 taacaagtat tcactactat atattgttca ctaccactat agtttaacat acactagtgt
      121 tcattgcaag gtactggtta gaaaaaatag tattgttttt tcaggagata aatgttaacc
      181 tattttagta aaaagtttac attaaggaga gatatgttta tgcgtgatca gaaattgaaa
      241 tttttagtcg tagatgcttt attcgcagtc atcattgctt tacttgcaca agttgctatc
      301 ccacttggtc caatccccct tactgggcag acgtttgcca ttgggttagc tgcaaccatt
      361 cttggagctc gtcatggtac aatatctgtt ttagtttaca ttgttcttgg cgctgtgggt
      421 attcctgttt tccaaggtat gacagcagga attgggattc tttttgggcc aactggcgga
      481 tttattgtcg gatttatttt taatgcacta cttacaggtt ggttgctcga aaaaacaaaa
      541 ttcactgttc cttatgcaat cgttgctaat attttaggag ccatcgttac gttaattttc
      601 ggggttttat ggcttaaagt tagcactgga cttgactggc cgaccgcctt tttaacaggc
      661 atggtacctt tcattattcc aggcattatc aaagcggttt ttgcggcgtt attagggatt
      721 ctcattcgtg atcgtttgat taaagccaaa ttacttcgag catcctaagt cccattaata
      781 cacattttga gtcttctcct atataatgat aatgattaac actgagaaaa ggggactcgg
      841 tatatgtcat tactgaatga ggaaaatagc ttttacaacg tagatttact caatttatta
      901 aaagattcta gtgaagcagt tcttccatat aaaagaattc gctttaggcg caaccaacag
      961 attttagctg aaggtgcgga aactgattat ttctacatca ttgaagatgg tgtcgtttct
     1021 atgagtaaaa atacttgtaa agaagatagc attattaact tcttaggtaa acaagaatgt
     1081 atcgggccgc ttacacttct tggtggtgca aaatcaccag taaattacac aacgataagt
     1141 gaagtgagtg tttatcaatt tgaacgtaaa tatgttctta ataaattctt aagttcacca
     1201 gatgtttttt ggcagatgaa tgcacttatg caaagtatgg ttacacctat gttagaacgg
     1261 gaaggttacg ttaatttacc ttctagcgag aaagttttag cgggattaat tgcttgtggg
     1321 gagagatttg gaagaatcga gtcggatggt tcttgtttga ttccctatta tttcacccaa
     1381 aaaatcttgg gaaattatct aaatttagct cgagcttacg ttgcaactaa cctgcgaaag
     1441 ctcgaagaag atggcattat tgcgctttcg ccaaaacctt ggcgtgttaa taatttcgag
     1501 attcataagc aaaaactaaa agaaaatcac gaaccttaca tatgagtgca aaatgaatac
     1561 ttttttctaa ttgtatttcg taaaaatatg cataataaaa agaagctatc aaactaagat
     1621 agcttctttt ttattaacta tttttaccaa taaagaaaaa tgttgcgatt gcgccgatac
     1681 cttgaacgat gaagaaaatc gcaacgacaa ggacgatacc aattgcagag acaactggat
     1741 tgaatagagc gataaaacca acaataatgc cgataatacc gattgttaaa atccagcccc
     1801 agccttgtac gttgttttgt ttggcagtga atgcgccaat tgtacgcata ataccagcaa
     1861 ataataccca cataccgaaa agtaatacga gtgttaaagt tccgtcaaat tcattaaata
     1921 atagcaagaa acctagtaag atggataaaa tcccgtcagc tagtacccag ccagaaacat
     1981 tttgtgattt tctgtctgaa aagtaagaga ttgtgtggaa aataccagaa atcagtaata
     2041 agaaaccaaa cattaatgtc gaggttaata atgaaattcc tggatggaat aagaaccaaa
     2101 cccctagtat aatcattgca atccccgcta ataaaacaag aattcgtgta aaagtcttca
     2161 ttttttattt caactcccct ttgttttttc taattcaacc ccattt
//
LOCUS       DASEAA010000264         2140 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.265, whole genome shotgun sequence.
ACCESSION   DASEAA010000264 DASEAA010000000
VERSION     DASEAA010000264.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2140)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2140)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2140
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.265"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            383..625
                     /locus_tag="U0342_002914"
     CDS             383..625
                     /locus_tag="U0342_002914"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424233.1"
                     /translation="MKRIILTSTLIVWTIVCIYMSISMVSNNTGIAFPIWLHIILLIC
                     FLATGIVNVKKKEYLWSTMLFEGVLVVLLSLIIVLV"
     gene            complement(708..1685)
                     /locus_tag="U0342_002915"
     CDS             complement(708..1685)
                     /locus_tag="U0342_002915"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2424234.1"
                     /translation="MKMTDPLYGTFEIEPVLAELIQSPLVSRLAHVHQGGASYLVNPL
                     WDLSRLDHSIGVMLFIRKFGGSLEEQIAGLLHDVSHTAFSHVVDYALDFEEEDYHEQI
                     FEDFVKTSTIPAILEKYGYSFEGIFEDISKWKILEQEAPELCADRIDYTLQDLYRHRK
                     ISLAEVEGFLQALVMVNGRLYLANISSAEWFVKQYYSEVIDYFYDPLNVYSYEILAEA
                     MRIAFQQETITTDDLRLTDAELLAKLNANSDAREKIQLLASVHLEENEVDFTYHHKKK
                     MRLINPSVLVDGRLIPADELSEKVREMNDWASERSKHGIYIKATKKSKQ"
     gene            1789..2094
                     /locus_tag="U0342_002916"
     CDS             1789..2094
                     /locus_tag="U0342_002916"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010958746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424235.1"
                     /translation="MAEDAIDKMKTNSGSVIIPDETSVVAKIFRDKIDLVANAIGTSI
                     YQIKRDEALQDAEQKAREQPTLAGSVTDSIEVVEEIPLVHHLANAPRLRMKVVGNLV"
BASE COUNT          735 a          426 c          360 g          619 t
ORIGIN      
        1 aaattgctat aaggaaatat aatcacaaac agtaaaaatt aacctataac tataaaaatg
       61 ataaaaaaga catattataa ataagagtat atgtttgtat aaaatgtgca aacgtacaca
      121 atgaatttaa taagaaatac caaaagtgaa ctcgtatatt caaataaaag tgtttaatct
      181 gtgtaaatta actttagact atcaagtaag cagtatcgca taacaggatt agttccaaca
      241 agctatggta agaaaatata tgcttttaaa tatcaggatg tacgtgcaat aggtacactt
      301 aaaggcaaaa aatagattaa caactaaaaa atgtaggaaa ttggttcttt aattccaaag
      361 catattaagg agtaatagta tagtgaaaag aataatttta acaagtacat taatcgtttg
      421 gacaatagta tgcatttaca tgagtatttc tatggttagt aataatactg gcattgcttt
      481 tccaatttgg cttcacatca ttcttttaat ctgcttctta gcgacaggta tagtaaatgt
      541 gaagaaaaaa gaatatcttt ggagcactat gttatttgaa ggcgtgttag tagttctatt
      601 aagtttaatt attgtattag tctaacggat gtaaatatat gaatagatgg atgttccaaa
      661 ctaaatagga gtattgttaa ctcaaacctc tcaagtaagc agtgtcacta ctgcttactt
      721 tttttggttg cttttatgta gatgccgtgc ttacttctct cagatgccca atcattcatt
      781 tcacgtactt tttctgaaag ctcatccgcc ggaataagcc gcccatccac caaaacagac
      841 ggattaatca aacgcatttt cttcttatga tgataagtaa agtccacctc attttcttct
      901 aaatgcacac tcgcgagcaa ctggattttc tcccgagcat ctgaattcgc attcaattta
      961 gccaataatt cagcatcagt caaccgaaga tcatcggtcg taatcgtctc ctgctgaaac
     1021 gcaatgcgca ttgcttcagc caaaatctca taactataaa cattcagcgg atcataaaaa
     1081 taatcaatca cctctgaata atattgctta acaaaccatt cagcggacga gatattcgcc
     1141 aagtaaagcc gcccattcac cattactaaa gcctgcaaaa atccctccac ctcagccaaa
     1201 ctaattttcc tatgtcgata caaatcttgc aacgtataat caatccggtc agcacaaagc
     1261 tccggggctt cttgctccaa aattttccac ttcgaaatat cctcaaaaat cccttcaaaa
     1321 gaataaccat acttctctaa aatggcagga atcgtcgaag tttttacaaa atcctcaaaa
     1381 atctgctcat gataatcttc ctcttcaaaa tcaagcgcat aatccaccac atgtgaaaaa
     1441 gcagtgtgcg atacgtcgtg cagtaagcca gcaatttgct cctccaaaga gccaccgaac
     1501 ttcctaataa aaagcatcac gccaatcgaa tgatcaagcc ggctaaggtc ccaaagcgga
     1561 tttactaaat aactcgcgcc accttgatgc acgtgtgcta gccgtgaaac caatgggctt
     1621 tggattagtt cagccaaaac aggttctatt tcaaatgttc cgtagagcgg gtctgtcatt
     1681 ttcatcatat tcacctcttt tttaattata tattagcgaa caaacgtttt ccatattttc
     1741 cctagcaatt ccaattttgc tgagacagtt tataaaaaaa ttactgaaat ggccgaagat
     1801 gcgattgata aaatgaaaac caattcgggt agtgtaatta ttccagacga aacctctgtt
     1861 gttgcaaaaa ttttccgcga taaaatcgac ctagttgcca acgcaatcgg cacatctatt
     1921 taccaaatca agcgggatga agcgctgcaa gatgccgagc aaaaagcgag agaacaacca
     1981 accttagccg gctcagtgac tgactcgatt gaagtagtgg aagaaatccc attggtgcat
     2041 catctggcta atgcgcccag attgcgcatg aaagttgtgg ggaatttggt ttaagggaag
     2101 taaatagtgg agcattccgg tcatttttta taaagtaatc
//
LOCUS       DASEAA010000265         2091 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.266, whole genome shotgun sequence.
ACCESSION   DASEAA010000265 DASEAA010000000
VERSION     DASEAA010000265.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2091)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2091)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2091
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.266"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            1..1608
                     /gene="inlH"
                     /locus_tag="U0342_002917"
     CDS             1..1608
                     /gene="inlH"
                     /locus_tag="U0342_002917"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012986546.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlH/InlC2 family class 1 internalin"
                     /protein_id="HEM2424236.1"
                     /translation="MVAAILGISLYVTTSQGAEVRAESIAQPTPINVIFPDPALANAV
                     KTATGKSNVTDTVTQADLDGIVTLSAFNTGVTTIEGMQYLNNLIGLELKDNQITDLTP
                     LKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDL
                     NQITDISPLAGLTNLQYLSIGNTQVSDLTPLANLSKLTNLRADDNKISDISPLASLPN
                     LIEVHLKDNQISDVSPLANLSNLFIVTLTNQTITNQPVYYQNNLVVPNVVKGPSGAPI
                     APATISDNGTYASPNLTWNLTSFINNVSYTFNQSVAFKNTTVPFSGTVTQPLTEAYTA
                     VFDVDGKQTSMTVGANELIKEPTAPTKEGYTFTGWYDAKTGGNKWDFSTDKMPAENIT
                     LYAQFTINSYTASFDNDGKITTQKVTYQSLLEEPAAPTKAGYTFKGWYDAKTGGTKWD
                     FATGKMPAGNITLYAQFTKNDSPNPNDPTPNTPTGNGDGTSNPSNSGGNTTLPTAGDE
                     NTMLPIFIGVFLLGTATLILRKSIKVK"
     gene            1804..>2091
                     /locus_tag="U0342_002918"
     CDS             1804..>2091
                     /locus_tag="U0342_002918"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014600431.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin N-terminal domain-containing protein"
                     /protein_id="HEM2424237.1"
                     /translation="MKRNKTALRILVTLAVVMAISFWVGTSSKEEVQAAVIAQPTPIN
                     EIFTDENLANAIKATLNKPSTTSDVSQTELDSIRDVTAESSNIASLEGAQYL"
BASE COUNT          749 a          388 c          385 g          569 t
ORIGIN      
        1 atggtagctg ctattctcgg tattagtcta tatgtaacga caagtcaagg ggcggaggtt
       61 cgcgcggaaa gcattgcgca gccaacccca attaatgtga ttttccctga tccggctctt
      121 gcgaatgcag ttaaaacagc gacaggaaaa tctaatgtaa cagatactgt tacgcaagca
      181 gatttagatg gaatagttac tttatcagca tttaatactg gagtaacaac gattgaagga
      241 atgcagtact taaataattt gatagggtta gaacttaagg ataatcaaat aacggattta
      301 actcctctta aaaatttaac gaaaataaca gaacttgaat tatctggaaa cccgttaaaa
      361 aatgtaagcg cgattgctgg gttacaaagc attaaaacgc tagatttaac ttctacgcaa
      421 attacagatg tgactccact tgcagggctt tccaatttgc aggtattata tttggatctc
      481 aatcaaataa ccgatataag cccgcttgca ggactcacta atttacaata cttatcaatc
      541 ggaaataccc aagtaagtga tttaacccca cttgctaatt tatctaaact aacgaattta
      601 agagctgatg ataataaaat aagtgatatt tcgccacttg cgagtttacc taaccttata
      661 gaagttcatt tgaaagataa tcaaattagt gatgtcagcc cacttgctaa tttatcgaac
      721 ttatttatcg tcactttaac gaatcaaaca attaccaacc aacccgtgta ttatcaaaat
      781 aatcttgtcg ttcctaatgt ggtaaaaggt ccttctggcg ctcctattgc acctgctact
      841 attagcgaca atggaacata tgctagtcca aatttaacat ggaatttaac tagttttatt
      901 aataatgtta gctacacgtt taaccaatca gtcgctttca aaaatacaac ggttcctttc
      961 agtggcacag ttacacaacc attaacagaa gcttatactg cggtttttga tgtggatgga
     1021 aaacaaacaa gtatgactgt cggcgcgaat gaattaatta aagaaccaac agcaccgacg
     1081 aaagaaggtt acactttcac aggctggtat gatgccaaaa ctggcgggaa taaatgggat
     1141 ttcagcacgg ataaaatgcc agcagaaaat atcacattgt atgctcagtt cacgattaat
     1201 agttatactg cctcatttga caatgatggg aaaataacga cgcaaaaagt cacttatcaa
     1261 agtttgttag aagaaccagc agcaccaacg aaagcaggtt atacgttcaa aggttggtac
     1321 gatgctaaaa ctggtggaac taaatgggat tttgcgacag gaaaaatgcc agcaggaaat
     1381 attacgctat atgcccaatt cactaaaaat gatagcccaa atccaaatga tccaacccct
     1441 aataccccaa caggaaatgg tgatggtaca agcaatccaa gcaattcagg aggcaatact
     1501 acacttccga cagctgggga tgaaaatacc atgctgccca tttttatcgg agttttcttg
     1561 ttagggacag caacgctaat tctccgcaaa tcaatcaaag taaaataaca tcgaaaacag
     1621 ctgcggttta tagacttcag ctgttttatt agttaataaa ttcatctaaa cgtcacaact
     1681 aatcatgaac gggtctaatt ttagtgatta aacagaattc tattaagtta taataaaata
     1741 attcagctat gagtacactc acaatcctaa aaaatggaat aatattataa aggagataag
     1801 ttaatgaaaa gaaataaaac agcattacgt atcttggtaa ctctggctgt agtaatggca
     1861 attagctttt gggtagggac gagctcaaaa gaggaagtac aggcggcagt aattgcacaa
     1921 ccgacgccaa tcaacgaaat ttttacagat gagaatttag caaacgcaat aaaagcaacc
     1981 ttaaataaac ctagtactac atctgatgtt tcacaaacag aattagattc tatacgtgat
     2041 gtaaccgcag aaagtagcaa tatagcttct ttagaggggg cgcagtattt a
//
LOCUS       DASEAA010000266         2077 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.267, whole genome shotgun sequence.
ACCESSION   DASEAA010000266 DASEAA010000000
VERSION     DASEAA010000266.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2077)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2077)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2077
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.267"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..966)
                     /locus_tag="U0342_002919"
     CDS             complement(<1..966)
                     /locus_tag="U0342_002919"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424238.1"
                     /translation="MKGHSQETSLRTLFQLLKKQKPIASYCITENLKAKLFPIMCDEF
                     DLSNDLPDDLSPFMLLCDQNKFIYPEESKLVDCLSDCIDFLRNTELPIQSVKMKEVTE
                     KQFILKLSYREGISQNTGEAYELIEVSLGKVGEVKWQSSAYTPTAKLNVHMKTLKKQF
                     LIGKTTANVGLFIQYESGKTIPLPFKNPITFGYPIFDTFIEGNKFLKEMAMETCDLPF
                     TWNEIFKAYNKRDFFQKKYPNQIFKKNTNKYSAGCIYALMKIKPFLSDNAFRKFEAFC
                     FDKQLGSDVFFAAKNNDFIAQLLLTYWKWKLNLDEEKEEDVYYYIL"
     gene            complement(984..1769)
                     /locus_tag="U0342_002920"
     CDS             complement(984..1769)
                     /locus_tag="U0342_002920"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424239.1"
                     /translation="MSKQQKKLIGTVAGFVLVILFCLTTKSFQGVNADGYPLINTFDN
                     VQVGNAEYQLVNQEYNKKTGYLEMQFLRTSEYAEVNKPEIKAEFVSHTGQTSKTNVDL
                     VTNDFLVVQVKEINDKFELGKIVIKEKTHDATSRKDVNAESDGIYFSTNSLVVDNEAR
                     PLTKEEYMTENIKIRIALLDKKITKLVKTNDRLKSTNKKSKVYMKELENEKELLIGTD
                     KEKTNEKIQSVQTEYEATQLEIKENEESINAFTKQKSNYQKQL"
     gene            complement(1769..2032)
                     /locus_tag="U0342_002921"
     CDS             complement(1769..2032)
                     /locus_tag="U0342_002921"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424240.1"
                     /translation="MFKTSADGHQEKIVSKLDSLNVYVLERKGQSIRTIVNEVTSATE
                     INKTTMKQRIYVKISYEIQKGKWKAKEILFTAIPSQDLKMGES"
BASE COUNT          608 a          367 c          250 g          852 t
ORIGIN      
        1 caaaatgtaa tagtatacgt cttcttcctt ttcttcatct aaattcaatt tccatttcca
       61 gtaagttaga agtaattgag ctatgaaatc attatttttt gcagcaaaaa aaacatcact
      121 tcctagttgc ttatcgaagc aaaatgcttc aaattttcta aaagcgttat ctgaaagaaa
      181 tggtttaatt ttcataagcg cgtaaatgca tccagcagaa tatttatttg tatttttctt
      241 aaagatttga tttggatatt ttttttgaaa aaaatctcgt ttattataag ccttaaatat
      301 ttcattccaa gtaaaaggca aatcacaagt ttccatcgcc atttctttaa gaaatttgtt
      361 cccttcgata aaagtatcaa aaataggata accgaacgta ataggatttt tgaatggtaa
      421 aggaattgtt tttccactct catactgtat aaatagacct acattcgctg ttgtcttacc
      481 tattaaaaat tgtttcttta aagtcttcat gtgaacattt aatttagctg ttggagtata
      541 ggcactactt tgccatttaa cctcacctac ttttccaagc gaaacttcta tcaattcata
      601 agcctcaccc gtgttttggg agataccttc tctataagat aattttaata taaattgttt
      661 ttcggttact tctttcattt tcacactctg aatcggtagt tctgtatttc tcaaaaaatc
      721 aatacaatca ctcaaacaat caaccaattt tgattcctct ggataaataa atttattttg
      781 atcacataaa agcatgaatg gacttaaatc atcaggcaaa tcattactta aatcaaattc
      841 atcacacatt ataggaaata atttagcttt taaattttca gttatacaat atgaagctat
      901 tggtttttgt ttctttagaa gttgaaataa cgttcttaac gatgtctctt gcgaatgtcc
      961 tttcactaat atcatccttt atattaaagt tgtttttgat aatttgattt ttgttttgta
     1021 aaagcattaa tactctcttc gttctcttta atctctagtt gtgtcgcttc gtattctgtc
     1081 tgtactgatt gaattttttc attcgttttt tctttatctg ttccgattaa aagttctttt
     1141 tcattctcaa gttctttcat atagactttc gattttttat tcgtactttt caacctgtcg
     1201 ttcgttttta ctagtttcgt tattttttta tctagcaacg caatacgtat ttttatattc
     1261 tctgtcatat attcttcttt tgttaacggt ctagcttcat tatcaacaac aagactatta
     1321 gtagaaaaat atatcccgtc actttctgca tttacgtctt tcctactcgt tgcatcatgt
     1381 gttttctctt taataactat ttttcctagc tcaaatttat cattgatttc ttttacttgt
     1441 actaccaaaa aatcattagt aactaaatcc acatttgttt tgctagtttg gccagtatga
     1501 gaaacaaatt ctgcttttat ttccggttta ttaacctccg catattcgct agttcttaaa
     1561 aattgcatct ctaagtaacc agttttctta ttatattctt gattaacaag ctgatattca
     1621 gcattaccta cttgaacatt atcaaatgtg ttaatcaatg ggtatccgtc tgcattgaca
     1681 ccttgaaacg attttgtagt taaacagaac aaaataacca atacaaaacc agcgactgta
     1741 ccaattaatt tcttttgttg cttactcatc aggattcccc catttttaaa tcttgtgatg
     1801 gtattgccgt gaaaagaatt tctttagctt tccactttcc cttttgtatt tcataactaa
     1861 tctttacata aatacgttgt ttcattgtcg ttttattaat ctcagttgcg cttgttactt
     1921 cattaacgat tgttcttatc gattgacctt ttcgttctaa tacataaaca tttaaactat
     1981 ccaatttgct tacaattttt tcttgatgtc catcagctga tgtcttaaac atcttctggt
     2041 attgatcttt tgttaaataa ggtttaatat tctctaa
//
LOCUS       DASEAA010000267         2041 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.268, whole genome shotgun sequence.
ACCESSION   DASEAA010000267 DASEAA010000000
VERSION     DASEAA010000267.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2041)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2041)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2041
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.268"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..287)
                     /locus_tag="U0342_002922"
     CDS             complement(<1..287)
                     /locus_tag="U0342_002922"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464862.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="rhomboid family intramembrane serine protease"
                     /protein_id="HEM2424241.1"
                     /translation="MSFQEQYVFWRLTNYFLGVEKYRLIHLHEEKQELWLENTSQKKR
                     PVIRIQMKELSWANVVERDVTHTLHVTENLRKQMGRLKLPLVNIYITPFEP"
     gene            complement(386..925)
                     /locus_tag="U0342_002923"
     CDS             complement(386..925)
                     /locus_tag="U0342_002923"
                     /EC_number="6.3.3.2"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="5-formyltetrahydrofolate cyclo-ligase"
                     /protein_id="HEM2424242.1"
                     /translation="MEDKRLIREKILRNLNSLDRVEHRERSIRLAEKLFLLPEWENAK
                     VVGITLARHPEIETEAIILQAKKEGKTILIPKTYYPSKKMEFKKMDSIHPLIKSKFGI
                     LEPNELAETVDKKVIDLLIVPGVAFNKDHYRIGFGGGFYDRFLTDFQGHTVSLYLYEQ
                     QIEFTPEKHDEPVSILIGG"
     gene            complement(981..1130)
                     /gene="rpmG"
                     /locus_tag="U0342_002924"
     CDS             complement(981..1130)
                     /gene="rpmG"
                     /locus_tag="U0342_002924"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_001265708.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="50S ribosomal protein L33"
                     /protein_id="HEM2424243.1"
                     /translation="MRVNITLECTECGDRNYITTKNKRENPERIELKKYCPRLRRVTL
                     HRETK"
     gene            1328..1684
                     /locus_tag="U0342_002925"
     CDS             1328..1684
                     /locus_tag="U0342_002925"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464859.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424244.1"
                     /translation="MTTVIIILLIAAIALFVISFLQKGDNKQLEKELEDVAAQWMQEN
                     FELKQRISELEKAMKMDSPSIEAEQVPDSPKVRELMKKQVITLYTSGIVTSEIAEQSS
                     LPKEEVEKIIEEYLKH"
     gene            1712..>2041
                     /locus_tag="U0342_002926"
     CDS             1712..>2041
                     /locus_tag="U0342_002926"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424245.1"
                     /translation="MKKNLRMLALGFLISAVVLLVYNQFFSTQTKADETKAASTKAGS
                     DENSSTWKNKYEKLLAQQEVDKATEAEAKKKAEEDAKKKAEEAKKVKSYTLKISKGDP
                     SSKAGDEL"
BASE COUNT          665 a          354 c          343 g          679 t
ORIGIN      
        1 attggttcaa atggtgttat ataaatattc acaagaggca atttcaagcg ccccatttgc
       61 ttacgaagat tttcggtaac gtgtaaagtg tgtgtcacat cacgttccac cacattagcc
      121 caacttaatt ctttcatctg tatacggatg actggtcttt ttttctggct tgtattttcc
      181 aaccaaagtt cttgtttctc ctcgtgaaga tggattaaac ggtatttttc aacacccaag
      241 aaataattag ttaggcgcca gaagacatat tgttcttgga agctcaaaaa attccctgct
      301 ttcattacaa attatattta ctactatacg caaaaaaaag ggtgttgtaa acaatccacc
      361 ctattttcta tagaattatt tttccttatc ctccaattaa aatagaaact ggttcgtcat
      421 gcttttcagg tgtaaactct atttgttgtt cataaaggta caaggacact gtatgtcctt
      481 gaaaatccgt taaaaatcta tcgtaaaatc ctccgccaaa accgattcta taatgatctt
      541 tattaaaggc aactccagga acaattagta agtcaattac ttttttatca actgtttctg
      601 ctaattcatt tggttctaaa ataccaaact tagattttat taaaggatgt atcgaatcca
      661 tctttttaaa ctccattttt ttgctaggat aatatgtttt tggaattaaa atggttttcc
      721 cttctttttt tgcttgtagg atgattgctt ctgtttcgat ttcagggtgt cttgctaatg
      781 tgataccaac aacctttgca ttttcccatt ctggtaataa aaatagtttt tccgctaatc
      841 taatagaacg ttcgcgatgt tctactctat caaggctatt caaattccgt aagattttct
      901 cgcgtatcag tcgtttgtct tccattttgg cttccccctt tttgttaata aaaaaagcaa
      961 cagaatggag atcctgctgc ttacttagtt tcgcggtgta aagttacacg gcgtaatctt
     1021 ggacaatatt tttttaattc aatacgttcc ggattttcac gcttattttt agtagtgatg
     1081 taattacgat caccgcattc agtgcattct aaagtaatat taacgcgcat tatttttccc
     1141 tccaactccg actgacgaat ttatttacta aacctgtata ataatatcat ttttaatcag
     1201 ttgttgcaag gactctatgc attttctttt tattttcttt acaaaacctt atttcggatg
     1261 gtgttttgag gtaaattatg ctataactag tagtagagtt tatggaagag aggtgtgtat
     1321 aaaacccatg accacagtca taattatctt actaattgct gctattgcgc tgtttgttat
     1381 ttcatttcta caaaagggtg acaataaaca attagaaaaa gaactggaag atgttgctgc
     1441 tcagtggatg caagaaaact ttgaactaaa acaacgtatc tctgaactag aaaaagcaat
     1501 gaaaatggat agcccaagca ttgaagctga gcaagttcct gatagcccga aagttcgtga
     1561 attaatgaaa aaacaagtga ttacacttta tacttctgga atcgtaactt cagaaattgc
     1621 tgaacagtca tctttaccta aagaagaagt ggaaaaaatc attgaagaat atttaaaaca
     1681 ttgatttaaa ttttaaagga ggagcctatc tgtgaagaaa aacttacgga tgttggcgct
     1741 aggtttctta atatctgctg ttgtcttact ggtgtataac cagtttttct ccacacagac
     1801 caaagcagat gaaacaaaag ccgcatcaac aaaagctggt tctgatgaaa attcaagcac
     1861 atggaaaaat aaatacgaaa aattattagc tcagcaagaa gtggacaaag caacggaagc
     1921 tgaagcaaag aaaaaggctg aagaagatgc taaaaagaaa gcagaagaag caaaaaaagt
     1981 aaaaagttat actttaaaga tttctaaagg agatccttct tctaaagctg gtgacgaact
     2041 t
//
LOCUS       DASEAA010000268         2021 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.269, whole genome shotgun sequence.
ACCESSION   DASEAA010000268 DASEAA010000000
VERSION     DASEAA010000268.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 2021)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 2021)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..2021
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.269"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..141)
                     /locus_tag="U0342_002927"
     CDS             complement(<1..141)
                     /locus_tag="U0342_002927"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465943.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424246.1"
                     /translation="MKKHIVLIVVACITVIAVFMYIVQINNSELKYQNRAQIKIASQM
                     ASQ"
     gene            complement(220..1362)
                     /locus_tag="U0342_002928"
     CDS             complement(220..1362)
                     /locus_tag="U0342_002928"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465944.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HAMP domain-containing histidine kinase"
                     /protein_id="HEM2424247.1"
                     /translation="MKSKLELLFTKISHVMNVWQATFFAAVSWILALITIQTIYLWSI
                     SIRDDSLFLREVSQAIVQLFGTNKYTRIMQSFWMMSLKFLIIFLIACLFFAFFYRLMR
                     QRILKKQLRTINFALNDGKPVDTESFVPEIQELERNIENMRERQKKLMQQEEQAQQAR
                     NDLITNVSHDLRTPLTSILGYLSYIHEDRYRDEIELRYYTELVYGKARHLHKLIDDLF
                     SYTRLDSVDYQLKKDELDIIELLRQLVAEYDGRAAERNMQIVEHFDANKLIIGGDGNQ
                     IMRLFENLFSNALRYGEGNKQIDVSAKKEDNMAVVRVTNYGEEIPNVDLPYLFERFYK
                     VDKNRTTTGTGLGLAIAKSIVEKHGGIVTAESKKRQTSFIVKLPLI"
     gene            complement(1352..>2021)
                     /locus_tag="U0342_002929"
     CDS             complement(1352..>2021)
                     /locus_tag="U0342_002929"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465945.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="response regulator transcription factor"
                     /protein_id="HEM2424248.1"
                     /translation="DDKEIVDLVKLYLQNEGYTIYQAYDGAEVWRLVQEKQPTLVILD
                     IMMPEMNGLEVCRLMRDNGILTPILMLSAKAEDNDKIMGLLTGADDYMVKPFNPLELS
                     VRVKAILRRMQQMSQAEPVSQDKVIIGPIVVDRGLHVVTVSGKELHLTTSEFDILFLL
                     ASEPGRVFSSEYIFEKIWQEKALGASKTVMVHISNLRDKLREAMGGENVIKTIWGVGY
                     KIEI"
BASE COUNT          619 a          447 c          316 g          639 t
ORIGIN      
        1 ctgactagcc atttgagagg ctattttaat ttgggcccta ttttgatatt tgagttcgct
       61 attattaatt tgaactatgt acataaatac cgcaataacc gtaatacaag caacaacaat
      121 taaaacaata tgttttttca ttctcctctc ctccgtgatt tatattctac agaaagaaca
      181 taaatcacgc ggaaagaaac ttttaagaat tgttaaagat taaattagtg gcagtttaac
      241 gataaaactg gtttggcgtt ttttgctttc ggcagtaaca attccgccat gtttttcaac
      301 gatagattta gcaatcgcaa ggcctaatcc ggttccagtc gtcgtccgat ttttatctac
      361 tttgtaaaag cgctcgaaca agtaaggtaa atcgacatta ggaatttctt caccataatt
      421 cgttacgcgc acaacagcca tattatcttc tttcttagca ctaacatcaa tttgtttgtt
      481 gccttctccg tatctaaggg cattcgaaaa taaattctca aataagcgca tgatttggtt
      541 gccatcaccg ccaataatta gtttgttagc atcaaaatgt tcgacaatct gcatatttcg
      601 ttctgcagct cgcccgtcgt actccgccac taattgccgt agcaactcaa taatgtctaa
      661 ctcatctttc tttagttggt aatccacgct atcgagcctt gtataagaaa acaaatcatc
      721 aataagtttg tgcaaatgac gcgctttccc gtacacaagc tcggtgtaat aacgcagctc
      781 aatttcatcg cgataacggt cttcatgtat ataacttaaa tagcctaaaa tggatgtaag
      841 tggtgttcgc aaatcatgcg aaacattcgt aatcaaatca tttctggctt gctgggcctg
      901 ttcttcctgc tgcattaatt ttttctgccg ttcccgcata ttttcgatgt tacgttccag
      961 ttcttgaatt tccggcacaa aactttctgt gtcaactggc ttcccgtcgt taagcgcaaa
     1021 attaatcgta cgcagttgtt ttttcaaaat tctttgacgc atcaaacgat agaaaaaagc
     1081 aaagaataga caagctatta aaaagataat cagaaatttt agcgacatca tccaaaaaga
     1141 ttgcatgatt cgcgtatatt tattcgttcc aaataattga acaatagctt gtgacacttc
     1201 ccgtaaaaac aaagaatcat cccgaatgga aatgctccat aaataaatag tttggatggt
     1261 aatcaacgcc aaaatccaag aaacagctgc aaaaaaagtc gcctgccaaa cattcatcac
     1321 atggctaatt ttcgtaaaca acagttccag tttagatttc aattttgtac cctactcccc
     1381 aaatagtctt aatcacattt tctccaccca tagcctcgcg taacttatca cgcaaattac
     1441 taatatggac cattactgtc ttactcgctc caagggcctt ttcttgccaa atcttctcaa
     1501 aaatatattc tgaactaaaa acgcgccctg gctcactcgc tagtaaaaat agaatatcaa
     1561 actcagaagt cgtcaaatga agttctttgc cactaacagt tacaacgtga aggccacggt
     1621 caactactat cggcccaatg atgactttat cttgactaac aggctctgcc tggctcattt
     1681 gctgcattct tcttagaata gctttcacgc gtacagaaag ctctaatgga ttgaatggct
     1741 tgaccatata atcgtccgca cctgttaaaa gacccatgat tttgtcgttg tcttcagcct
     1801 tggcactaag cattaggatg ggagtcaaaa tcccattatc tctcattaat cggcatactt
     1861 ctaagccgtt catttcaggc atcataatat ctagtatcac taaagttggc tgtttttctt
     1921 gaactaaacg ccatacttcc gcaccatcat aagcttgata aatcgtatat ccttcatttt
     1981 gtaaatataa ttttactaaa tcaacaattt ctttgtcatc a
//
LOCUS       DASEAA010000269         1981 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.270, whole genome shotgun sequence.
ACCESSION   DASEAA010000269 DASEAA010000000
VERSION     DASEAA010000269.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.270"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1642)
                     /locus_tag="U0342_002930"
     CDS             complement(<1..1642)
                     /locus_tag="U0342_002930"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463863.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2424249.1"
                     /translation="MKKKFSIVIISVLLLGYLAPFDTLLVGADETTVTEDTTVKTAET
                     ETATEATESESGSDNEKAEEPKEAEASKETTEKEEKAKTKEPASNIKTEINTDKSQLK
                     QTNLKAVVPAGSTYNSLFPDDNLAKKLAVIITGNAAATGNESVDSAALLAISQLDLSG
                     ETGNDPTDISNIEGLQYLENLTSLNLSENNISDLAPIKDLVNLVSLNLSSNRTLVNLS
                     GVEGLVNLQELNVSANKALEDISQVAALPVLKEISAQGCNIKTLELDNPAGAILPELE
                     TFYLQENDLTDLTSLAKLPKLKNLYIKGNASLKSLATLKGATKLQLIDASNCTDLETL
                     GDISGLSELEMIQLSGCSKLKEITSLKDLPNLVNITADSCAIEDLGTLNNLPKLQTLI
                     LSDNKDLTNINAITDMPQLKTLALDGCGITSIGTLDNLPKLEKLDLKENQLTSISEIN
                     DLPRLSYLDVSVNYLTTIGELKKLPLLEWLNVSSNRLSDVSTLTNFPSLNYINVSNNV
                     IRTVGKMTELPSLKEFYAQNNNVSDISMIHDMPNLRKVD"
BASE COUNT          554 a          371 c          308 g          748 t
ORIGIN      
        1 catccacttt tcttaaattc ggcatatcgt gaatcatcga aatatctgat acattgttgt
       61 tttgagcgta aaattccttc agtgaaggta attcagtcat tttaccgact gtcctaatga
      121 cattatttga tacattaata taatttaaac tcgggaaatt tgttagtgta ctcacatctg
      181 ataacctatt cgaactaaca ttcaaccatt ctaatagtgg taattttttt aattccccta
      241 ttgttgtaag ataatttaca cttacatcta aatagcttaa tcgaggtaag tcgtttattt
      301 cacttatact agttagttga ttttccttga gatctaattt ttctaattta ggaaggttat
      361 caagcgttcc aatagatgta attccgcagc catccaaggc taatgttttt aattgtggca
      421 tatcggtaat tgcattaata ttggttaaat ctttattatc tgagagaatt aatgtctgta
      481 atttcggtaa attattcagt gttcctaaat cttcaatcgc acagctatct gccgtaatat
      541 tcaccaaatt aggcaagtcc ttcaagcttg tgatttcttt cagtttacta caaccactta
      601 attgaatcat ttcgagttcc gaaagcccgc taatatctcc aagcgtttct aaatcggtac
      661 agttactcgc atcaatcaat tgaagcttcg tcgccccttt taatgtcgct aaacttttta
      721 aagaagcatt ccctttaata tagagattct ttagttttgg aagttttgct aatgaagtta
      781 agtcggttaa atcattttct tgcaagtaaa atgtttctag ttctggcaaa atagcgccag
      841 ctggattatc taattccaat gttttaatat tacagccttg cgcactaatt tcttttaaca
      901 ctggtaatgc tgcaacttgt gaaatatctt ctaacgcctt atttgcagag acattaagtt
      961 cttgcaaatt aactaaaccc tccacccctg aaagatttac taatgttcga ttggaagaaa
     1021 ggttaagtga aaccaggttc accaaatctt taattggggc caagtcagat atattattct
     1081 cacttaaatt caggctcgtt aaattctcta aatattgtaa tccttcaata ttggaaatat
     1141 ccgttgggtc attgcccgtt tccccactca aatcaagttg gcttattgct aaaagagctg
     1201 cactatccac tgattcatta cctgttgcag ccgcatttcc tgtgataatc acggctaatt
     1261 ttttagcaag attgtcgtct ggaaacaaag aattatatgt gcttcctgct ggtactactg
     1321 cttttaaatt agtttgtttc aactgacttt tgtctgtatt aatttctgtt ttaatattag
     1381 aagccggttc ttttgttttc gctttttcct ctttttctgt cgtttctttg cttgcttctg
     1441 cttcttttgg ctcttctgcc ttttcattgt ctgaaccaga ttcgctttct gtagcttcag
     1501 tagcagtttc tgtttctgcc gttttcactg tcgtatcttc ggtgacagtg gtttcatctg
     1561 cacctactaa tagagtatca aaaggcgcta aataaccaag taacaatacg ctgataataa
     1621 ctatactaaa tttctttttc aagactttcc ctctattcta tcttttaatt tattttgaat
     1681 aaaattgaca ctaattaatt ataagatgtt agaaatagtt agatagttcg agtcagtact
     1741 aaatcgtccg gaaaatgtgt ctatttttgg gtttcactta ttaaatcgca gaggaagttc
     1801 tattattaga ctatccttcg tctttgaggg aataataggc aaaaaaaact atcacccctt
     1861 ttcataaagt taaaagttgt tttgggacat gttactcgtt ttttctgcta tcttttagta
     1921 ctccagtatc aaaaaaagag gagacagctc tctgtctcct ctccttgtga gttgcaacta
     1981 t
//
LOCUS       DASEAA010000270         1981 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.271, whole genome shotgun sequence.
ACCESSION   DASEAA010000270 DASEAA010000000
VERSION     DASEAA010000270.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1981)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1981)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1981
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.271"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..268
                     /locus_tag="U0342_002931"
     CDS             <1..268
                     /locus_tag="U0342_002931"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="fibronectin type III-like domain-contianing
                     protein"
                     /protein_id="HEM2424250.1"
                     /translation="NVAGEEVVQLYLHDMEASITRRKKELKAFKKVRIAAKQTATVTF
                     KLDKSSFEIWSINNKYEVEPGGIEIFVGGSSDTKLTGRVSIIGG"
     gene            274..582
                     /locus_tag="U0342_002932"
     CDS             274..582
                     /locus_tag="U0342_002932"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PTS lactose/cellobiose transporter subunit IIA"
                     /protein_id="HEM2424251.1"
                     /translation="MEGMELASFQIISSVGAARSCIIEAMKFGRQRKFTEAYKKIDEA
                     NEFLSEGHKNHVQLIQKEADGGDVQISILFMHAEDQFMTTYTLRDVAYEMIAIWKEMK
                     "
     gene            733..1833
                     /gene="ychF"
                     /locus_tag="U0342_002933"
     CDS             733..1833
                     /gene="ychF"
                     /locus_tag="U0342_002933"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466301.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="redox-regulated ATPase YchF"
                     /protein_id="HEM2424252.1"
                     /translation="MALTAGIVGLPNVGKSTLFNAITKAGAEAANYPFATIDPNVGIV
                     EVPDHRLNKLTELVKPKKTVPTTFEFTDIAGIVKGASKGEGLGNKFLSHIRQVDAICH
                     VTRCFDDENITHVEGRVDPLDDISTINLELILADLETVEKRIGRVEKLSKQKDKDAVA
                     EYNVLVKLREAFENDKPARAIEFNEEEEKIVRNLFLLTRKPVLYVANVSEEDVSSPDD
                     NKYVQQVREFAASENSEVIVVCARAEEEIAELEDEDKLEFLEALGIEESGLDQLIRSA
                     YTLLGLATYFTAGVQEVRAWTFIKGMKAPQCAGIIHTDFERGFIRAEVVAYDALLEYG
                     SEQAAKEAGKVRLEGKEYEMKDGDVVHFRFNV"
BASE COUNT          682 a          304 c          434 g          561 t
ORIGIN      
        1 taatgtagcc ggtgaagaag ttgtgcaact ttatcttcat gatatggaag caagtattac
       61 tagaagaaaa aaagaattaa aagcatttaa aaaggttcgt attgcagcga aacaaacagc
      121 tacagtgaca tttaagctag ataaatcaag ttttgaaata tggtcaatta acaataaata
      181 tgaggtggag cccggtggta tagaaatttt cgttggtgga agttctgata ctaaattaac
      241 agggcgagtt tcaatcatag gaggctagcg aaaatggaag gaatggaact cgcatcattt
      301 caaataatta gttctgttgg cgccgcaaga agttgcatta ttgaggcgat gaaattcgga
      361 agacaaagaa aattcacaga agcatataaa aaaattgacg aggctaatga atttcttagc
      421 gaaggtcata aaaatcatgt gcaactaatt caaaaagagg cagatggcgg agacgtacaa
      481 atttctatcc tcttcatgca cgcggaagat caatttatga caacttatac attacgcgat
      541 gtagcttatg agatgattgc tatttggaaa gagatgaagt aattaaaacg aaaatccttt
      601 actgattaaa gggttttcgt tttttggtgg gtggcttttt gtttgaaaaa cctttataat
      661 atacgttagt gaaaaaatgt ctatttgaca ggcattttca aaatgaagtt aatgaaaagg
      721 agtttatata taatggcact tacagctggt attgtcgggc ttcctaatgt tgggaaatcg
      781 acacttttta atgcaatcac aaaagcagga gcagaggctg cgaattatcc gtttgcgacg
      841 attgacccga acgtaggaat tgttgaagtt cctgaccaca gattaaacaa actaacggaa
      901 cttgtaaaac cgaaaaagac cgttccaaca acttttgaat ttacagatat cgccggaatt
      961 gtaaaaggtg ctagtaaagg ggaaggactt ggaaacaaat tcttatccca tattcgtcaa
     1021 gtggatgcaa tatgccatgt aactcgttgt tttgatgacg aaaatatcac ccacgtagaa
     1081 ggccgagtag acccgctaga cgatatttct acaatcaact tagaacttat cttagcggac
     1141 ttagaaacag tagagaagcg cattggacgc gttgagaagc tatctaaaca aaaagataaa
     1201 gatgctgtgg ctgaatataa cgttttagtt aaactacgtg aggctttcga aaatgacaaa
     1261 ccagctcgtg cgattgaatt taacgaagaa gaagagaaaa tcgttcgcaa ccttttctta
     1321 cttacaagaa aaccagtttt atatgtagca aatgtaagtg aagaagatgt ttctagtccg
     1381 gacgataaca aatatgtaca gcaagtacgc gaattcgctg cgagtgagaa ctctgaagtt
     1441 attgtagtat gtgctcgcgc tgaggaagaa attgctgaac ttgaagacga agataagcta
     1501 gagtttttag aagcgcttgg aattgaagaa tctggtttag accaattgat tcgttctgcg
     1561 tatacattgc ttggcttagc gacttacttc acagcaggcg ttcaagaagt tcgcgcttgg
     1621 acattcatca aaggtatgaa agctccacaa tgtgccggaa tcattcatac tgatttcgaa
     1681 cgtggattca ttcgcgctga agttgttgca tatgacgctt tacttgaata cggctcagag
     1741 caagcagcca aagaagcggg aaaagtacgc ttggaaggta aagaatacga aatgaaagat
     1801 ggagatgttg ttcatttccg ctttaacgtt taatatgttt cacgtgaaac aatcttttga
     1861 caagtaagta tgtcaaaaga ttgtttttta ggttagttca taaattctgc gttactgata
     1921 tacttcaaaa gagtattaag ctaatttttg aacagattta tacttttaat atagaaagtg
     1981 a
//
LOCUS       DASEAA010000271         1960 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.272, whole genome shotgun sequence.
ACCESSION   DASEAA010000271 DASEAA010000000
VERSION     DASEAA010000271.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1960
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.272"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            93..647
                     /locus_tag="U0342_002934"
     CDS             93..647
                     /locus_tag="U0342_002934"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465275.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="molybdate metabolism regulator"
                     /protein_id="HEM2424253.1"
                     /translation="MAITMYIDQPGASLNYETTHPHFKEHFKASFYLDGQDSYGPFGY
                     KDGLEVLRRLEEYFSDKSDQGLNLSSFPKYMMETVKKANYVPAKDDGVERLKQLLAEF
                     GSDVRASDRITVSAALAQIKITGYILPALRDAALESLHREIELNKIENIDAGYADSMF
                     YDLLTFTKDYTSVLPDMWCRHCTE"
     gene            complement(678..1151)
                     /locus_tag="U0342_002935"
     CDS             complement(678..1151)
                     /locus_tag="U0342_002935"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009926778.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="shikimate kinase"
                     /protein_id="HEM2424254.1"
                     /translation="MGAGKTTVGNILANLADLPYIDIDEVITSEQGMSVSDIFAKYGE
                     KEFRRLEHEKLKELATTKAVIATGGGIVLNPENREVLKNTYPVIYLETDPEVFMNRLK
                     GDTTRPLVQQKTAEEIRAIFEPRIAHYQDSADFIVNTDNRNQEEVARAILTMLDK"
     gene            1375..1884
                     /locus_tag="U0342_002936"
     CDS             1375..1884
                     /locus_tag="U0342_002936"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465273.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424255.1"
                     /translation="MIENELEHAKKMEKIEFGVNRRLIFSSCLLWMAVGLLLYVVFSH
                     IKGVNGIEEMILLVFIGLCVLRPLFRLINIAPTVELTERGVAYRGDFKSWNEIKKTEL
                     KKPAMMLFSQGRLKIMTSINGREEVAWDIVAADVSISLEELEKLIQSMRSTYTNDETI
                     GMEIFVEKK"
BASE COUNT          630 a          301 c          380 g          649 t
ORIGIN      
        1 catgaaattg tcaccttttt ttcttctttc aaaaaggtag atagtctggt aagatgaatg
       61 tatgagattt cacatgaatg gaggaaatga gaatggcaat tactatgtat atcgaccagc
      121 ctggtgcctc gttaaattat gagacaacac atccacattt caaggaacat tttaaagcga
      181 gtttttattt ggatggtcag gatagctatg gtccatttgg gtataaagat ggacttgaag
      241 tacttcgacg tttagaagaa tattttagtg ataaaagtga tcaaggactc aatttatcgt
      301 cttttccaaa atacatgatg gaaacagtga aaaaagcaaa ctatgttcca gcgaaagacg
      361 atggtgtaga acgattgaaa caacttttgg ctgagtttgg cagtgacgta cgtgcatctg
      421 atagaattac tgtctcagca gctttagctc aaatcaaaat cacgggctat attttacctg
      481 ctcttcgtga tgcggcgctg gaatcacttc atcgcgaaat agaattgaac aaaatagaaa
      541 atattgatgc aggttatgcg gacagtatgt tttatgactt attaaccttt acaaaagact
      601 atacatctgt gttaccagat atgtggtgca gacattgtac agaataaaaa aacaacgcta
      661 aaattagcgt tgttttttta cttatctaac atggttaaaa tagctcgagc aacttcttct
      721 tgattacgat tatccgtatt aacgataaag tctgcagaat cttgatagtg agcaattcta
      781 ggttcaaaaa tagcgcgaat ttcttcggct gttttttgtt gtacaagcgg acgtgtagtg
      841 tcgcctttta agcgattcat aaatacttcg ggatccgttt ctaaataaat aaccggatat
      901 gtatttttta aaacttctct attttcagga ttgagaacaa tgccaccgcc tgttgctata
      961 acggctttgg ttgttgctaa ttcttttaat ttttcatgtt ctagacggcg gaattctttt
     1021 tcaccatatt tagcaaaaat gtccgataca ctcattcctt gttcgcttgt aattacttcg
     1081 tcaatatcga tgtacggtaa gtcagctaag tttgcgagta tatttccaac cgttgttttt
     1141 ccagctccca tgaagcctat taagataact tgatcgatga tgttctcctc ctttattgga
     1201 ttattacatt ttactactta aaagcattaa agaaattata tcacaaatgc caaaaaggtc
     1261 aactgaaagt aggctgattt ctttaaaata aaaagctaca tgaatgcctt cttcccattg
     1321 tagtatattt ttagtacaat agaaataata gagctgtaaa actggaggaa aataatgata
     1381 gaaaatgagc tagaacatgc aaagaaaatg gagaaaatcg aatttggggt caatcgacgt
     1441 ttgatttttt caagttgttt actttggatg gctgttggat tattacttta tgttgttttt
     1501 agtcatatca aaggtgtaaa tggcatagag gaaatgattt tactcgtatt tatcggcctt
     1561 tgtgtgttac gtccattgtt tcggttaatt aatatcgctc ccaccgtaga attaacagaa
     1621 cgtggagttg cttatcgtgg tgattttaaa tcatggaatg aaattaaaaa aacagaactg
     1681 aaaaaaccag caatgatgct tttttcgcaa ggtagattaa aaattatgac atcgataaat
     1741 gggcgggaag aagtggcatg ggacatagtt gctgcggatg tttctattag tttggaggaa
     1801 ctagaaaaac tcattcagtc gatgcgttcc acttatacaa atgatgaaac tatcggtatg
     1861 gaaatctttg tggaaaagaa ataataagga aaatcattta tctgtttttt tgacggataa
     1921 atgatttttt aataaataca actatagccc atagtatctt
//
LOCUS       DASEAA010000272         1941 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.273, whole genome shotgun sequence.
ACCESSION   DASEAA010000272 DASEAA010000000
VERSION     DASEAA010000272.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1941)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1941)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1941
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.273"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..821)
                     /locus_tag="U0342_002937"
     CDS             complement(<1..821)
                     /locus_tag="U0342_002937"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465269.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2424256.1"
                     /translation="MKILVFGGTRFFGKKLVERLVSEGHEVTIGTRGKTEDNFGDTVK
                     RVILNRESRDALFQLAKEDWDVIYDNICFSPKEALYAVDAFKGKVKRYIYTSSLSVYS
                     QKGRALVEADFNPEHYEIVIGDKEDFDYGEGKRLAEAVFFQKASFPVVAVRFPIVLGL
                     DDYTKRLHFHINHIKNHQEIGISNGQAEIGFITSDEAAHFLEWVGVESDLTGPVNATS
                     NGTYALNGFIKMLEEKIGKLALVEEVTDDVDDSPFGIEKTYYLDNTKATEAGFVF"
     gene            complement(891..1568)
                     /gene="virR"
                     /locus_tag="U0342_002938"
     CDS             complement(891..1568)
                     /gene="virR"
                     /locus_tag="U0342_002938"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465270.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="two-component system response regulator VirR"
                     /protein_id="HEM2424257.1"
                     /translation="MVKVYIVEDDEVIRDTIRKHLSKWGFEIGVVEDFNNILQEFLAF
                     EPQLVILDVNLPFFDGFYWCNQIREVSNVPIIFLSSRNSRMDQIMGMNMGADYYIEKP
                     VDLDVLMARINALLRRTYSYADLEEANVMEHNNVFLHIDTNTLTHLEDKIELTKNEFL
                     ILYELMKQKGSIVSRDEIMRALWEDESFVDDNTLTVNVVRIRKKLAEIGLSEFIKTKK
                     GQGYMIE"
     gene            complement(1631..>1941)
                     /locus_tag="U0342_002939"
     CDS             complement(1631..>1941)
                     /locus_tag="U0342_002939"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease"
                     /protein_id="HEM2424258.1"
                     /translation="IYFKLVTDAVSEKAKFDILFKLGVTEKEIRKIISKQVWPIFVIP
                     LFFGIAHSMAALWGISVNLMDNIKYPVLIGTGIYILCYAAYYFLCINSFTKIVMANKK
                     "
BASE COUNT          627 a          406 c          265 g          643 t
ORIGIN      
        1 ttaaacacaa aaccagcttc ggtagctttc gtattatcta aataataggt tttttcaatg
       61 ccaaacggag aatcatcgac gtcatccgtc acctcttcaa ctagtgctaa tttcccgatt
      121 ttttcttcaa gcattttgat gaaaccattt aatgcgtatg tgccattgga ggtagcgttt
      181 accggtcctg tcagatccga ttccacacca acccactcta aaaaatgcgc cgcttcatca
      241 gaagtaataa agccaatctc agcttgtcca ttactaatcc caatttcttg gtggttttta
      301 atatgattaa tatgaaagtg aaggcgtttt gtgtaatcgt caagtccaag cacgattgga
      361 aaacgaactg caactactgg aaaagaagct ttttggaaaa atacggcttc agcaagtcgt
      421 ttcccttcac cgtaatcaaa atcttcttta tctccaataa caatttcata atgctctgga
      481 ttaaagtcag cttcaactaa agctcgacct ttttgactat aaacagagag tgatgatgta
      541 tatatgtatc gttttacctt gcctttaaat gcatctacgg cataaagtgc ttctttcgga
      601 gagaaacata tattatcgta aataacatcc cagtcttctt ttgctaattg gaataaagca
      661 tctcttgatt ctcgatttaa aataacccgt ttgacagtat caccaaaatt atcttctgtt
      721 ttgccccttg tcccaatggt gacctcatgt ccttctgaaa caagtctttc cactaatttc
      781 ttgccaaaaa aacgagtacc accgaatact aaaattttca tttagactcc tcctccattt
      841 acgaaaaaca ggaagttcgc gttttttagc gctatcttcc tgttttttcg tcattcaatc
      901 atatatcctt ggcctttttt cgttttgata aattcgctca aaccaatttc tgctagtttt
      961 ttacgaatac gaacaacatt aactgtcaat gtattatcat caacaaaact ttcatcttcc
     1021 caaagtgcgc gcataatttc atcacgactt acaatgctac ctttttgttt cattaattca
     1081 tataaaatca aaaattcatt tttcgttagc tcaattttat cttctaaatg tgtaagtgtg
     1141 ttcgtatcaa tgtgtaggaa aacattatta tgctccatca cattggcttc ttctaaatct
     1201 gcgtaagaat atgtccgcct taatagagca tttatccgcg ccattaaaac atccagatca
     1261 actggttttt caatataata gtctgcaccc atattcatgc ccattatttg gtccattcgc
     1321 gaattacgtg atgataaaaa gataatgggt acattcgaaa cttctcgaat ttgattacac
     1381 caataaaagc catcaaagaa aggaagatta acatctaaaa taactaattg aggttcgaaa
     1441 gctaaaaact cttgtaaaat attgttaaaa tcctctacta caccaatctc aaatccccat
     1501 ttacttaaat gttttcggat tgtatcacga attacttcat catcttctac gatatatacc
     1561 tttaccattt ctagtgcctc cctcggtgga actctcttct cattttagct gaaataacca
     1621 caaaagccaa ttacttttta ttggccatca caattttggt aaaagaattg atacacaaaa
     1681 agtaataagc tgcataacaa agaatataaa tacctgtacc aattaatacc ggatatttta
     1741 tattatccat taaattaaca gaaatacccc acagtgcagc catggaatgc gcaattccaa
     1801 aaaataatgg aataacaaaa attggccaaa cctgcttgga aataattttc cggatttctt
     1861 tttccgtaac tcctaattta aataaaatat caaacttggc tttttcagaa actgcatctg
     1921 taactaattt gaagtaaatg a
//
LOCUS       DASEAA010000273         1891 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.274, whole genome shotgun sequence.
ACCESSION   DASEAA010000273 DASEAA010000000
VERSION     DASEAA010000273.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1891)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1891)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1891
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.274"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1608
                     /locus_tag="U0342_002940"
     CDS             <1..1608
                     /locus_tag="U0342_002940"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463963.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2424259.1"
                     /translation="YLPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKIKDLSSIK
                     DLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKLTDITILSRLTKLDTLSLEDNE
                     ISDIVPLSGLTKLQNLYLSKNHISDLRALAGLKNLDVLELFSQECLNKSINHQTNLVV
                     PNTVKNIDGSLVTPEIISDDGDYEKPNVKWHLPEFINEVSFIFYQPVTVGKAKARFHG
                     RVTQPLKEVYTVSYDVDGTVIKTKVEAGTRITAPKPPTKQGYVFKGWYTEKNGGHEWN
                     FSTDYMSGNDFTLYAMFKAETTEKAVNLTRYVKYIRGNAGIYKLPREDNSLKQGTLAS
                     HRCKALTVDREARNGGELWYRLKNIGWTKAENLSLDRYDKIEYDKGVTAYARVKNAPG
                     NAVWTKPYNTAGATLVNKLSVYQGKNMRILREAKTPITTWYQFSIDGKVIGWVDTRAL
                     NTFYKQSMEIPIQLTRYVSANKGNEAYYKVPVVDSPIKWGTLAKYKNQTLIVDRTATV
                     EGQLWYRIRTSSTFIGWTKAANLRAQK"
     gene            complement(1723..>1891)
                     /locus_tag="U0342_002941"
     CDS             complement(1723..>1891)
                     /locus_tag="U0342_002941"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463965.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2424260.1"
                     /translation="VGANIQQVLASKYDLLQQKIEFEMEKIKLDSIVRDISVLESKDR
                     PQNMEIIEKYL"
BASE COUNT          680 a          306 c          365 g          540 t
ORIGIN      
        1 tatttaccca atgtgacaaa gttattttta aacgggaata aactaacaga tataaagccc
       61 ttagcaaact tgaaaaattt aggatggctt tttttagacg aaaataaaat taaagaccta
      121 agttcgatca aggacttaaa aaaattaaaa tcactttctt tggagcataa tggtataagt
      181 gatataaatg gacttgttca tttaccgcaa ctggaaagtt tgtatttggg aaataataaa
      241 ctaacggata taacgattct ttcacgttta actaaactgg atactttgtc tcttgaagat
      301 aacgaaatta gtgatattgt gccactttca ggtttaacta aattacagaa tctatattta
      361 agtaagaatc atataagcga tttaagagcg ttagcagggc ttaaaaatct ggatgtttta
      421 gaattgttta gccaagaatg tttgaataaa tctattaatc atcaaacgaa tctagttgtt
      481 ccgaacacag taaaaaacat tgatgggtcg cttgttactc cagaaataat aagtgatgat
      541 ggcgattatg aaaaaccgaa tgtcaaatgg catttaccag aatttataaa tgaagtaagt
      601 tttattttct atcaaccagt tactgttgga aaagcaaaag cacgatttca tgggagagta
      661 acccaaccac tgaaagaggt ttacacagta agttatgatg ttgatggaac ggtaataaaa
      721 acaaaagtag aggcagggac gcgaataact gcacctaaac ctccgaccaa acaaggctat
      781 gtttttaaag gctggtatac tgaaaaaaat ggtggacatg agtggaattt tagtacggat
      841 tatatgtccg gaaacgattt tactttgtac gcgatgttta aagcggaaac gactgaaaaa
      901 gcagtgaatt taacacgcta tgttaaatat attcgcggga atgcggggat ctacaaactt
      961 ccaagagaag ataactcgct taaacaagga acgctagcct cgcaccgctg taaagcttta
     1021 actgttgata gagaagcgcg aaatggcggt gaattatggt acaggttaaa aaatattggc
     1081 tggaccaaag ctgaaaatct ttccttagac cgttacgata aaatagaata tgacaaaggt
     1141 gttactgctt atgcaagagt aaaaaatgcg ccagggaatg cagtttggac gaaaccatac
     1201 aatacagctg gcgcaaccct cgtgaacaag ctttccgtct accaaggtaa aaatatgcga
     1261 atattgcgcg aagccaaaac accaattact acgtggtatc aatttagcat tgatggtaaa
     1321 gtaattggtt gggtcgatac gcgtgcactt aacacatttt ataaacaaag catggaaata
     1381 ccaatccaat taactcgata cgtcagcgca aataaaggaa atgaagcata ctataaagtt
     1441 ccggtagtag atagcccaat caaatgggga actttagcca agtataaaaa tcaaacatta
     1501 attgtcgatc gaacagccac cgttgaaggt cagctttggt atcggataag aactagctcc
     1561 actttcattg gttggacgaa agctgctaat ttaagggcac agaaatgacc tacgaaaagc
     1621 tatttctaaa tattggggaa gaaaaaagct acaactttaa atttatgaaa aaagaactga
     1681 ttcgctgaaa acggatcagt tcttttttct ttggacttat ttttacaaat acttttcgat
     1741 aatttccata ttctgcggcc ggtctttgct ttcaagtaca gaaatatcac gaacaatact
     1801 atctaattta attttttcca tttcaaattc tattttttgt tggagcaaat cgtatttact
     1861 cgcaagaact tgttggatat tggctccgac a
//
LOCUS       DASEAA010000274         1887 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.275, whole genome shotgun sequence.
ACCESSION   DASEAA010000274 DASEAA010000000
VERSION     DASEAA010000274.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1887)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1887)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1887
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.275"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..667)
                     /locus_tag="U0342_002942"
     CDS             complement(<1..667)
                     /locus_tag="U0342_002942"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465690.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424261.1"
                     /translation="MHSDEEIFKETTPKALLQLLKKDYYFHDYCYQEIIPRGKEIKMN
                     NSKGFQIYLVESGYFSYCLQNEYGDSGIISFVGGEIAINLIPIIKEEPEESVLRSLTE
                     VHCWVLDPDFVERVLDESGQKAKYLLSNLLYTRKVYFKASKRNFMKKELRIRACLKEL
                     GLYMGRVTKDKEFILPDEINNSILAQYANTTREYTNIIVLKLRKEGILDDSHKPWVIK
                     KIDI"
     gene            complement(732..1349)
                     /locus_tag="U0342_002943"
     CDS             complement(732..1349)
                     /locus_tag="U0342_002943"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465691.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2424262.1"
                     /translation="MTKIKRIMTGIIQENCYIIYQDKVALIVDPGDEASKIEAEIAKL
                     EVKPVAVLLTHCHYDHIGALEEIRKTFNIPVYVSPLEQEWLSNPELNLSAHIAGKAII
                     AQPAENEFTLGEYSIEGFRFKVVPTPGHSIGSVSFIFDDFVVVGDALFKGSIGRTDLY
                     TGDFDMLINSIKTQLFVLPDDFPAYSGHGDATTIGHEKKTNPYFN"
     gene            1480..1869
                     /locus_tag="U0342_002944"
     CDS             1480..1869
                     /locus_tag="U0342_002944"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465692.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2424263.1"
                     /translation="MTAKMLHTCIRVKNLTESITFYEKALGLKEVRRKDFPDFEFTLV
                     YMAFEEGGFELELTYNYDQKEAYDLGNGYGHLAVGVPDVHALLKEHQEAGFTVTDLKG
                     LPGEDPFYYFLTDPDGYKTEIIQDGAL"
BASE COUNT          599 a          355 c          294 g          639 t
ORIGIN      
        1 gtatgtctat tttcttaatg acccacggtt tgtgactatc atcgagaatt ccttcttttc
       61 gtagttttag tacaataata ttcgtatatt ctcgagtagt attcgcatat tgggctaaaa
      121 tagaattatt gatttcatca ggcaaaatga attccttatc ctttgttact ctgcccatgt
      181 acagaccaag ctcttttaag catgctctaa tacgaagttc tttcttcata aaattacgct
      241 tactagcttt aaaataaact tttcttgtat aaagtaagtt agataataga tatttcgctt
      301 tttgacccga ttcatccaaa acacgttcca caaaatcagg atcaagtacc caacaatgaa
      361 cttctgtcaa actacgcagt acggactcct ctggttcttc tttaataatc ggaattaaat
      421 taattgctat ttcgccacca acaaagctaa taatcccaga atctccatat tcattttgga
      481 ggcaataaga gaagtatccg ctttcgacta agtatatttg gaaacctttc gaattattca
      541 tcttgatttc tttacctcta ggaataattt cttgataaca ataatcatga aagtagtaat
      601 ctttttttag taattgtagt aatgcttttg gcgttgtttc tttgaaaatt tcctcatctg
      661 aatgcatttt ccaacatcct ttccattgat tacaaaaaaa ctgcagaata aatgcttctg
      721 caagttcttt tttagttaaa atatgggttt gttttctttt catgaccgat agtggttgca
      781 tcaccatgac ctgaataggc tgggaagtca tctggaagta caaacagttg tgttttaata
      841 ctatttatta acatatcgaa atctcctgtg tataaatccg tacgaccgat actaccttta
      901 aacaaagcgt cgccaactac gacaaaatca tcgaaaataa aactaacgct tccgatagaa
      961 tgccctggtg tcggtactac tttaaaacga aaaccttcta tactatattc acctaacgta
     1021 aattcatttt ctgccggttg cgctataatt gctttaccag ctatgtgcgc agataaattt
     1081 aattctggat tggataacca ttcttgttct agtgggctaa catatactgg aatattaaat
     1141 gttttgcgaa tctcttctaa agcaccaata tgatcatagt gacaatgagt taacaaaact
     1201 gccactggtt ttacttcaag ttttgcaatt tctgcttcaa ttttacttgc ttcatcgcct
     1261 gggtcaacaa ttaaagctac cttatcttga taaatgatat aacaattttc ttggattatt
     1321 cctgtcatga ttcgtttgat ttttgtcatt tcacttccgc ctttcttcac attcatcatt
     1381 atacctaaaa agccacctta cttccatcaa tattccttgt ttgtattcac ttccgagata
     1441 tactacaatg aagaaagaag tttaaaagga ggaataaaaa tgactgcaaa aatgttacat
     1501 acatgtatcc gcgtaaaaaa cctaacagaa tcgattactt tttacgaaaa agcattagga
     1561 cttaaagaag ttcgccgcaa ggacttcccg gatttcgaat tcacattagt atatatggcg
     1621 tttgaagaag gcggttttga actagaatta acgtacaact acgaccaaaa agaagcctac
     1681 gatttaggaa atggttatgg tcacttagca gttggtgttc cggacgtaca tgctttatta
     1741 aaagaacacc aagaagctgg ttttactgtg acagatttaa aaggactacc tggcgaagat
     1801 ccattctatt atttcttaac agatccagat ggttataaaa cagaaatcat tcaagatggc
     1861 gctttataat tagaagaact ggagaag
//
LOCUS       DASEAA010000275         1886 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.276, whole genome shotgun sequence.
ACCESSION   DASEAA010000275 DASEAA010000000
VERSION     DASEAA010000275.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1886)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1886)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1886
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.276"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..658
                     /locus_tag="U0342_002945"
     CDS             <1..658
                     /locus_tag="U0342_002945"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731479.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424264.1"
                     /translation="EILDQQKAELESQLKQVENSTTYIEKQSELEMIEEKLRDEKGSS
                     INAVAEIQIKIDKLNAEASDLKADLAKFDSNQKQENRIQELEEEAAEKGAKYDELEMG
                     LYLIERFNKAKCNLLEDKINSKFKYVSFKLFKTQINGGIDECCETIYNGVPYNSGLNN
                     AARINGGLDIINALTEHVQVLAPIFVDNRESVTELIDTESQLVSLIVSESDENLRVEA
                     "
     gene            659..1444
                     /gene="bet"
                     /locus_tag="U0342_002946"
     CDS             659..1444
                     /gene="bet"
                     /locus_tag="U0342_002946"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731480.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage recombination protein Bet"
                     /protein_id="HEM2424265.1"
                     /translation="MMAKENYSDPNGKLLNSITTFEVNGEEVKLSGNIIRDYLVSGNA
                     EVTDQEIIMFLQLCKYQKLNPFLNEAYLVKFKNTKGPDKPAQIIVSKEAFMKRAETHE
                     QYDGFEAGVIVERGGEIIELEGAVSLASDKLLGGWAKVFRKDRNRPVSVRISEKEFNK
                     RQSTWNTMPLTMMRKTAVVNAMREAFPDNLGAMYTEEEQGSLQNTETSVQQEIKQNAN
                     AEVLDIPSQQNEVPDFKEVREPEHVEMPPIYDEQQSTPPARPY"
     gene            1404..>1886
                     /locus_tag="U0342_002947"
     CDS             1404..>1886
                     /locus_tag="U0342_002947"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2424266.1"
                     /translation="MMSSNLHRLLDLINMEIKTIASGSTGNAYVISSGRSQLLIECGV
                     NFDKIRKALNFDLSAVEACLISHEHGDHVAGVKKMLRTSSIKIYASEGTLSALNVPDS
                     RQFILKEKNAQNIGEWIILPFQTEHDAKEPLGFMIQRNNERLLFITDSYFVRYKFKNI
                     N"
BASE COUNT          723 a          290 c          389 g          484 t
ORIGIN      
        1 agaaatatta gatcaacaaa aagcagagtt agaatcgcaa ctgaaacaag ttgaaaactc
       61 tactacttac atcgagaaac aatctgaact ggaaatgatt gaagaaaaac tgcgtgatga
      121 aaaaggttct tctataaatg cagtagcaga gattcaaatc aaaattgata aattgaatgc
      181 tgaagcaagt gatttaaaag ctgatttagc aaaatttgat agcaatcaga aacaagaaaa
      241 tcgcattcag gaattagaag aggaagcagc agaaaaaggc gctaagtacg acgaattgga
      301 aatgggatta tatctcattg aacgatttaa taaagcaaaa tgtaatcttc ttgaagacaa
      361 gattaacagc aagttcaaat atgtttcatt caagttattt aaaacgcaaa ttaacggtgg
      421 gattgatgag tgctgtgaaa cgatttacaa cggtgttcct tacaattccg gattgaacaa
      481 tgccgctaga ataaacggtg gtttggacat tattaacgca ctaacagagc atgttcaagt
      541 gcttgctcca atttttgtag ataatagaga gtcggtaact gaactaattg atacagaatc
      601 acagctagtt agcttaatcg tttctgagtc agatgaaaat ttgagagtgg aggcataaat
      661 gatggcaaaa gagaattata gcgacccaaa cggaaaattg ctcaatagta taacgacatt
      721 tgaagtgaat ggagaagaag taaagctatc tggcaatatt attagggatt atttagtaag
      781 tggaaatgca gaggttacag accaggaaat aatcatgttt ttgcagttat gtaaatatca
      841 aaaattaaat ccatttctta acgaagccta cctagttaaa tttaaaaata caaaaggtcc
      901 agataaaccc gcacaaataa ttgtttctaa agaagcattt atgaaacgtg ctgaaacaca
      961 tgaacaatat gacggattcg aagcaggtgt aattgtggaa aggggcggtg aaattattga
     1021 attagaaggc gcagtttctc tagcctcaga caaattatta gggggctggg caaaggtttt
     1081 tagaaaagat agaaataggc cagttagtgt aagaatcagt gaaaaagagt ttaataaaag
     1141 acaatcaact tggaatacca tgcctctaac aatgatgcgt aagaccgcag ttgttaatgc
     1201 gatgagagaa gcttttccgg ataacttagg tgccatgtat acagaggaag aacaaggttc
     1261 gctacaaaac actgaaacaa gtgttcaaca agaaattaaa caaaatgcta atgcagaagt
     1321 gttagatatt ccttcacagc aaaatgaagt gccagatttt aaagaagtaa gagagcccga
     1381 gcatgtagaa atgccaccga tatatgatga gcagcaatct acaccgcctg ctagacctta
     1441 ttaatatgga aattaagaca atagcaagtg gaagtacagg gaacgcctac gttattagta
     1501 gcgggcgctc ccaactgcta attgaatgtg gtgtaaactt cgacaaaata agaaaagcac
     1561 taaattttga tttatcggca gtggaagcct gtttaattag ccacgagcat ggagatcacg
     1621 tcgctggcgt caaaaagatg ttacgcacat caagcattaa gatatacgca tcagaaggca
     1681 ccttgtctgc tttaaatgtt ccggacagtc gacaattcat tttaaaagaa aaaaacgctc
     1741 aaaacatcgg agaatggatt attttaccgt ttcaaactga acatgatgca aaagagccac
     1801 ttggttttat gattcaacgc aataatgaaa gactactttt cattacagat agttattttg
     1861 taagatacaa attcaaaaac atcaac
//
LOCUS       DASEAA010000276         1869 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.277, whole genome shotgun sequence.
ACCESSION   DASEAA010000276 DASEAA010000000
VERSION     DASEAA010000276.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1869)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1869)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1869
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.277"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            278..619
                     /gene="mobC"
                     /locus_tag="U0342_002948"
     CDS             278..619
                     /gene="mobC"
                     /locus_tag="U0342_002948"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="plasmid mobilization relaxosome protein MobC"
                     /protein_id="HEM2424267.1"
                     /translation="MVNRNRNIDLKFRVTEEEKAFIEMKMKEAGITNREAYLRKMAID
                     GAIIVSNYDETKKLTLELNKIGTNINQIARIANTDNKISKDNIKKIEEMMQKVWQLQR
                     YGLSKKRSIKQ"
     gene            568..>1869
                     /locus_tag="U0342_002949"
     CDS             568..>1869
                     /locus_tag="U0342_002949"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724755.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="relaxase/mobilization nuclease domain-containing
                     protein"
                     /protein_id="HEM2424268.1"
                     /translation="MAVTKIWSIKKTLDKAMKYILNPIKAKYVYSYACAPETADLEFE
                     LTLDQNSHSGGINKAYHIIQSFKPEETTPEQAHEIGKQLLEQHLKGKYEYILTTHIDK
                     EHIHNHVIFCASSFVEHKKYNDCMKTYYQLREASDTLCAEHDLSVIPPNQNKGKSHYE
                     WQMDQQGNSWKAQLRTSIDMCIKNSKTFDDFASQMQTQGYEIKYGKHIAFRAEKQKRF
                     TRAMQLGGNYTEENIKLRIAQKDKLPIKKAKKINLKNEPLSVMVALENNKKVIESKGY
                     EHWAKLHNLKQSAKTVNLLKELGISSIEEWEQKKISNQEIMNANMAEIKVIEKELANK
                     KFILKQLITYEDTKGIYHSADKQLLNTKEPQSAIQLYKTAVKALKQVNIKPSKQIKDE
                     LYRQIQSLQNQQQELYKKHKNCKKNQKQDRIIDRNLTQISTK"
BASE COUNT          791 a          278 c          334 g          466 t
ORIGIN      
        1 agctactaaa ggatactcaa ccagtagata aagaaacagc cgagttaatg gcttacacaa
       61 ttgacttgct tcaaaaattt agagaagagt gaatttcatt cttcttttta ttatcacgta
      121 aatttgaaaa gtaatagaga agcaagcact ggatatggta ccccatatcc aaattccacc
      181 ccgtttcgca ttcgcgactc gtgtttgaaa ttgcttgttg gggaaatccc caaacccctt
      241 gtttttaaaa ttaaattgga aaggaagaaa gtgaaaaatg gtaaatagga atcgaaatat
      301 tgatttgaaa tttagagtta ctgaggaaga aaaagcattc attgaaatga aaatgaaaga
      361 agcgggaata acgaaccgtg aagcatattt aagaaagatg gcgattgatg gagcgattat
      421 tgtttcaaat tatgatgaaa cgaaaaaact tactttggag ctaaataaaa ttggtacgaa
      481 tattaatcaa attgcacgaa tagcaaacac agataataaa atttcaaaag ataatattaa
      541 aaaaatagag gagatgatgc aaaaagtatg gcagttacaa agatatggtc tatcaaaaaa
      601 acgctcgata aagcaatgaa atatattcta aatccaatca aagctaaata tgtttatagt
      661 tacgcctgcg caccagaaac tgccgacttg gagtttgaat taacattaga ccaaaatagt
      721 cactcaggag gtattaataa agcttatcat attattcaat cgtttaaacc tgaggaaact
      781 accccagaac aagcacatga aatcggcaaa caattactgg aacaacactt aaaaggtaaa
      841 tatgaatata tactaacgac acatatagat aaagaacata tccataatca cgtgatattt
      901 tgcgcatcta gctttgtgga gcataaaaaa tataatgatt gtatgaaaac atattatcag
      961 ctgagagagg caagtgatac attatgtgca gaacatgatc tttctgtaat tccgccaaac
     1021 caaaataaag gaaaaagtca ctatgaatgg caaatggatc agcaaggaaa cagctggaaa
     1081 gcacaattga gaacctctat tgatatgtgt ataaaaaata gtaagacatt tgatgatttc
     1141 gcaagccaaa tgcaaacaca aggatatgag attaaatatg gtaagcatat tgcttttcgt
     1201 gctgaaaaac aaaaacgatt cacacgagcg atgcaactag gcggaaacta cacagaagaa
     1261 aatatcaaat tacgtatcgc tcaaaaagat aagctgccaa tcaaaaaagc taagaaaata
     1321 aacctgaaaa acgagccact tagtgttatg gttgcattgg aaaataataa gaaagtcatc
     1381 gaaagtaaag gctatgagca ttgggcgaaa ttgcataacc ttaaacaaag tgcaaagact
     1441 gttaatttac tgaaagagct tggtatttct tctattgagg agtgggagca gaaaaaaata
     1501 agtaatcaag aaataatgaa tgctaatatg gcagaaataa aagttattga aaaagaatta
     1561 gctaataaga aatttatttt gaagcaactc attacctatg aagatacaaa aggaatatat
     1621 cattctgcag ataagcagct actgaatacc aaggaaccac agtctgctat tcaattgtac
     1681 aaaactgctg ttaaggcgct taaacaagtt aatattaaac cgagtaagca gataaaagat
     1741 gagctatata gacaaataca aagtttacag aatcagcaac aagagctata caaaaagcat
     1801 aaaaattgca aaaaaaacca aaaacaagat agaattattg atcggaattt aacgcaaatc
     1861 tccacgaaa
//
LOCUS       DASEAA010000277         1862 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.278, whole genome shotgun sequence.
ACCESSION   DASEAA010000277 DASEAA010000000
VERSION     DASEAA010000277.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1862)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1862)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1862
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.278"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..222)
                     /locus_tag="U0342_002950"
     CDS             complement(<1..222)
                     /locus_tag="U0342_002950"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465304.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424269.1"
                     /translation="MYETMIAKAGVRELLGMDTSLIYGSFAYKMEGEWMDLTGLWISN
                     ADALIFYLENEDVYLLKKFDYERIEKVEQK"
     gene            complement(272..1045)
                     /locus_tag="U0342_002951"
     CDS             complement(272..1045)
                     /locus_tag="U0342_002951"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465303.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2424270.1"
                     /translation="MFAFENVCLKRDNKMILSDINWVVNDKENWAILGLNGSGKTTLL
                     QLLNGYLWPSSGNLQVLGHVFGQTSLPELRKSIGWVSNALDHQLKEYEFSEQIVLSGK
                     FASIGIYEKVTTAEIDQAKKLLTDCGGSTLIGKPYKILSQGERQIVLIARALMASPKL
                     LILDEPCNGLDLFAKERLLERIKKIAELPESPTMLFVTHHTEEILPCFDNIILLRDGE
                     ITHHGKTENLLTEEVLQDFYQKPVELIRIKDGSIAVYPK"
     gene            1114..1719
                     /locus_tag="U0342_002952"
     CDS             1114..1719
                     /locus_tag="U0342_002952"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465302.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HD domain-containing protein"
                     /protein_id="HEM2424271.1"
                     /translation="MKQEEIIIAAQKWMQSHFEKETTGHDWEHIKRVWHLSKQIQATE
                     GGDKFAIELAALFHDYNDSKLTSDPAQATEVITHWMKGKEIPEEVISKIIRIIQSVSF
                     KNGKNPTQASTIEEKIVQDADRLDAIGAIGIARTFTYGGAHNREIANRDHPENTTLQH
                     FYDKLLLIQKQLKTKTGRELAGEKQKIMQEFIHALEKELKI"
BASE COUNT          662 a          376 c          288 g          536 t
ORIGIN      
        1 tttttgttct actttttcta ttctttcata atcgaatttc ttcagtaagt agacatcttc
       61 attttctaaa taaaaaatca acgcatctgc atttgaaatc caaagtcccg ttaaatccat
      121 ccattcgcct tccattttat aagcaaatga accataaatc agactagtat ccatcccgag
      181 aagctcacgt acacctgctt ttgcaatcat cgtttcatac aaaacatttc gcccctctac
      241 atacgcattt ttcgtattct aactatacca tttacttcgg atagactgca atggagccgt
      301 cttttatccg aattaattct actggctttt gataaaaatc ttgaagaact tcctctgtca
      361 aaagattttc tgtttttccg tgatgagtta tttccccgtc acgcagtaaa atgatattat
      421 cgaagcaggg aagaatttct tccgtatggt gagtaacaaa aagcatcgtt ggggattctg
      481 gcagttccgc tatcttctta attctttcta ataagcgctc ctttgcaaat agatcaagcc
      541 cattacaagg ttcatctaaa ataagtaact taggacttgc cattaaagca cgtgcaatta
      601 aaacaatttg acgctctcct tgcgataaaa ttttatacgg ctttccaata agtgtgctac
      661 cgccacaatc ggtaagcagc tttttcgctt ggtcaatctc cgcagtagtg actttctcat
      721 aaatgccaat acttgcaaat ttcccactaa gtacaatttg ctcgctgaac tcatactctt
      781 tcagctgatg atcaagcgca ttactaaccc aaccaatcga tttacgtaac tctggcaaag
      841 aggtctgtcc aaaaacatgc ccaagtactt gaagatttcc actgctaggc caaagatacc
      901 catttaaaag ttgcaacaaa gttgtttttc cagaaccgtt tagtccgagt attgcccagt
      961 tttccttatc attaaccacc caattaatat ccgataaaat cattttatta tcacgcttta
     1021 aacaaacatt ctcaaaagca aacatcgaat accccatttc cattttctac tattgtacat
     1081 gaaaataacg taaaaaagga gccaatacta atgatgaagc aagaagaaat aataattgca
     1141 gcgcaaaaat ggatgcaatc ccatttcgaa aaggaaacta ctggacacga ctgggaacat
     1201 attaaacgag tctggcattt aagtaaacaa atccaagcaa cagaaggcgg agataaattt
     1261 gcaatcgaat tagcagcatt gtttcacgac tataatgata gcaaactaac atcagatcca
     1321 gcacaagcaa cagaagtaat cacgcattgg atgaaaggaa aagaaattcc tgaagaggta
     1381 atcagtaaaa tcatccgaat catccaatca gtctcattta aaaatgggaa aaatcctacc
     1441 caagcttcta caatagaaga aaaaatagtt caagatgcag accgcttaga tgcaattggt
     1501 gcaattggta tagctagaac atttacatac ggaggggcgc acaatagaga aatcgctaat
     1561 cgagatcatc cggaaaatac cacattacaa cacttttacg ataaattgct cctaattcaa
     1621 aaacagctaa aaacaaagac tggtcgggaa cttgcaggag aaaaacaaaa aattatgcag
     1681 gaatttatac atgcactaga gaaagaatta aaaatataac ttaaaaggct tgtatttaat
     1741 ataaagctgt tatataatga taaagctgaa ttgatacaaa ttaattcatc aaaaacattt
     1801 taaaaatagt tgttgacgtg atttcaactt tatggtaaga tttaaaagtt gcgttaacaa
     1861 ag
//
LOCUS       DASEAA010000278         1849 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.279, whole genome shotgun sequence.
ACCESSION   DASEAA010000278 DASEAA010000000
VERSION     DASEAA010000278.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1849)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1849)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1849
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.279"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            169..1845
                     /locus_tag="U0342_002953"
     CDS             169..1845
                     /locus_tag="U0342_002953"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465720.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="peptide ABC transporter substrate-binding
                     protein"
                     /protein_id="HEM2424272.1"
                     /translation="MKKSKLFLTLGLTLLLSLVLVACGGGSDSKSDKKGSDSGKASGE
                     QVLNLTESALIPSADSTKADDQVGLNVVNQTNEGLYALDKDGIPAIAGAAEEPKVSDD
                     KTVYTIKLREDAKWSNGDPVTANDYVYSWRRAVDPNTAATYSYLFDAIKNGGDIVAGK
                     KKPEELGIKAVDDYTLEVTLSKPTAYINSLFAFPTFFPLNEKFVTEKGEKYAQNSDNM
                     LFNGPFELKDWTGTNKKWTYVKNDKYWDKDKVKLKQINVQVVQDSGTGLNLYNTDKVD
                     RTVLSADYAAQNKNNKDYVTVNDSSTFYIKFNQKRAGKDTVFANKNIRKAIALAIDKQ
                     SYTDTVLKNGSKPANNLVPEGFTFDPGNKEDYTKESGKHLEYDVKEAQKAWKAGLKEL
                     GVNEITVEFTSDDTENARKSSEFIQDQLQKNLDGLTVKLKNVPFKVRLQNDQNQDYDF
                     SMSGWGPDYQDPSTFLDLFVTDGAQNRMSYSNKDYDKILNDASVTYAADDQKRWDEMV
                     KAEKILLTDDVAIQPLYQRSTAYLQKDYIKNLQKNPFGPDYTYKETYLTK"
BASE COUNT          696 a          334 c          315 g          504 t
ORIGIN      
        1 gttcagagtt ttcacgcaat ttcaattttg ccttaatatt ttaataactt gtatctttca
       61 tccttgtttt catttatctt gtaaaaataa tttacaaagc cagaattctt agagtataat
      121 aggtatcgaa acaatttttc agaaaaataa aaaagggagg tctacttagt gaaaaaatct
      181 aaattatttc ttacacttgg attaacacta ttactaagct tagtcttggt agcatgcgga
      241 ggcggatcag attccaaatc cgacaaaaaa ggctcagatt caggaaaagc ttcaggagag
      301 caagtactta acttgacaga aagcgcacta attccttctg cagacagcac aaaagcggat
      361 gaccaagttg gtttgaacgt tgtaaaccaa acaaacgaag gtctatatgc gcttgacaaa
      421 gatggtattc ctgccattgc cggtgctgct gaagagccaa aagttagcga tgacaaaaca
      481 gtttatacaa tcaaacttcg tgaagatgca aaatggtcaa acggagaccc tgtaactgca
      541 aatgactatg tttactcatg gcgtcgtgca gttgacccta acactgctgc aacatattct
      601 tacctatttg atgcaatcaa aaacggtgga gatatcgtag ctggcaagaa aaaacctgaa
      661 gaattaggaa ttaaagcagt agatgattat actttagaag ttactctatc taaaccaact
      721 gcttacatta actcactatt cgcattcccg actttcttcc cacttaacga aaaattcgtt
      781 acggaaaaag gcgaaaaata tgcacaaaat agtgataaca tgttattcaa tggacctttc
      841 gagttgaaag actggactgg aacaaacaaa aaatggactt acgtaaaaaa tgataaatat
      901 tgggataaag ataaagttaa gttgaaacaa atcaacgtac aagttgttca agactccggt
      961 actggactta acttatacaa cactgacaaa gttgaccgta ctgtattgag tgcagactat
     1021 gctgctcaaa acaaaaacaa taaagactat gtaacagtga atgattcttc tactttctac
     1081 attaaattta accaaaaacg tgctggcaaa gatacagtat ttgctaacaa aaacatccgt
     1141 aaagctatag ctcttgcgat tgacaaacaa tcgtatactg atacagttct taaaaacgga
     1201 tctaaacctg caaacaacct tgtaccagaa ggtttcactt ttgacccagg taacaaagaa
     1261 gattatacaa aagaatctgg caaacattta gaatatgatg taaaagaagc tcaaaaagct
     1321 tggaaagctg gtttgaaaga attaggagtt aacgaaatta cagttgaatt cactagtgat
     1381 gacactgaaa atgcgagaaa atcttctgaa ttcattcaag accaactaca aaagaactta
     1441 gacggtctta cagttaaact taaaaacgta ccatttaaag ttcgtttaca aaatgaccaa
     1501 aaccaagatt acgatttctc tatgagcggc tggggtcctg actatcaaga tccatccact
     1561 ttcttagatc tattcgtaac tgatggtgca caaaacagaa tgagttattc taacaaagac
     1621 tacgacaaga ttttaaatga tgcttctgta acttatgcag ctgacgatca aaaacgttgg
     1681 gatgaaatgg ttaaagcaga aaaaattctt cttacggatg atgtagctat tcaaccactt
     1741 tatcaacgtt ctactgcata cctacaaaaa gactacatta aaaacttgca aaaaaatcca
     1801 tttggtccag attacactta caaagaaaca tacttgacta aataaaata
//
LOCUS       DASEAA010000279         1847 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.280, whole genome shotgun sequence.
ACCESSION   DASEAA010000279 DASEAA010000000
VERSION     DASEAA010000279.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1847)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1847)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1847
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.280"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..684
                     /locus_tag="U0342_002954"
     CDS             <1..684
                     /locus_tag="U0342_002954"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3883 domain-containing protein"
                     /protein_id="HEM2424273.1"
                     /translation="KGHLMLDDKKGIEATIDFIINNGTFNELSEKTKSKKIFEIEKKR
                     TLVLGKEETRSRYSLVKEEKAPYITKRDYAKEAIRNTEKGLQGEYLVINYERERLMKN
                     TITKSYADKITHVSESGDGHGYDIISYDINPDASNEVIEIYIEVKTTTGNRDAPFYLS
                     DNELNVARIKGELYKIYRVYDYNTAPKLKIIDNLFDETLEIKPINYIVKGVNQNDNNT
                     KNQLPKNTL"
     gene            641..1723
                     /locus_tag="U0342_002955"
     CDS             641..1723
                     /locus_tag="U0342_002955"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738030.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="aminotransferase class I/II-fold pyridoxal
                     phosphate-dependent enzyme"
                     /protein_id="HEM2424274.1"
                     /translation="MTTTLKTSYQKTPYKLGGNGPRNVGVLTEALQNIDDNLESDIYG
                     NGAVIANFETKIAKILGKQSAVFFPSGTMAQQIALRIWADRKENRRVAYHPLSHLEIH
                     EQDGLKELQQITPILLGTANRLLTIADIKSLREPVSSVLIELPQREIGGQLPAFEELE
                     EISEYCHEQGISLHLDGARLWEITPFYQKSAEEICALFDSVYVSFYKGIGGVAGAILA
                     GNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRIGKMAEYFEAAKGLAERFNSC
                     PGVKTVPEVPVSNMFHVYFEKSADEIGAVLTKIQDETGVGISGYLQEKSADVCAFEVS
                     VGDAFAEIPAKNLELVFECLEKELRL"
BASE COUNT          615 a          256 c          444 g          532 t
ORIGIN      
        1 aaaggtcatt taatgttgga tgacaaaaaa ggtatagaag ctacaattga tttcataatt
       61 aataatggaa ctttcaatga attaagcgaa aaaacaaaat caaagaaaat ctttgaaata
      121 gaaaaaaagc gcacattagt tttaggtaaa gaagaaacac gttcaagata ttcgttagtt
      181 aaggaagaaa aagcacctta catcactaaa agagattatg cgaaagaagc tattagaaat
      241 acggaaaaag gattgcaagg agagtatttg gtaattaatt atgaaagaga aaggttaatg
      301 aagaatacta ttacaaaatc ttatgcagat aaaatcactc atgtttctga aagtggtgat
      361 gggcatggat atgatattat ttcctatgac ataaatccag atgcatcaaa tgaagtgatt
      421 gagatttata tcgaagttaa aacaacgaca ggaaatagag atgctccatt ttatttatca
      481 gataatgaat taaatgttgc gagaataaaa ggtgagcttt ataaaattta tcgggtatat
      541 gattataata cagcgccaaa actgaagatt attgataatt tattcgatga gaccctagaa
      601 ataaaaccaa tcaattatat cgtaaaagga gtgaaccaaa atgacaacaa cactaaaaac
      661 cagctaccaa aaaacacctt ataaactagg cgggaacggt ccgcgcaatg taggtgttct
      721 gacagaagca cttcaaaata ttgatgataa cctagaaagc gatatttacg gaaatggcgc
      781 agttattgca aactttgaaa caaaaatcgc gaaaattctc gggaaacaat ctgcggtgtt
      841 tttcccaagt gggacgatgg ctcagcaaat cgcgttaagg atttgggctg accggaaaga
      901 gaatcggcgc gtggcatatc atccgctttc gcatttggag attcacgagc aagacggact
      961 aaaagagttg cagcaaatca cgccaatatt acttggaaca gcgaatcgac ttttgacaat
     1021 tgctgatatt aaaagcctgc gcgagccagt ttctagtgtg cttatcgaac ttccacaacg
     1081 agaaattggt gggcagctgc ctgcttttga agagcttgag gagatttcgg agtattgcca
     1141 tgaacagggt atttcgttgc atcttgacgg ggcacggtta tgggaaatca cgccgtttta
     1201 tcagaagtct gcggaagaaa tttgtgcgct gtttgatagt gtgtatgtgt cgttttacaa
     1261 aggaattggc ggggttgctg gggcgattct ggctgggaat gatgattttg tgcaagaggc
     1321 gaaaatctgg aaacgacggt atggcgggga tttgattagt ttgtatccat atattttgtc
     1381 cgcggattat tattttgaaa aacggattgg gaaaatggcg gaatattttg aggcggcgaa
     1441 aggattggcg gagcgcttta attcgtgtcc gggcgtgaag actgtgccgg aagtgccggt
     1501 ttctaatatg tttcatgttt attttgagaa gtcggctgat gagattgggg cggttttgac
     1561 gaagattcag gatgaaactg gggttgggat ttcggggtat ttgcaggaga aatcggcgga
     1621 tgtttgtgcg tttgaggttt cggttgggga tgcgtttgca gagataccgg caaaaaattt
     1681 agaactagtt tttgaatgtt tggaaaagga acttagacta taaatttgga tataaaaaga
     1741 caagctattt tctatagtag cttgtctttt ttagtatgaa ttatatttta tttcgactga
     1801 ttatttggtc ttcataagat tttaaatcgg atagaatttc attaatt
//
LOCUS       DASEAA010000280         1819 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.281, whole genome shotgun sequence.
ACCESSION   DASEAA010000280 DASEAA010000000
VERSION     DASEAA010000280.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1819)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1819)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1819
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.281"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(70..534)
                     /locus_tag="U0342_002956"
     CDS             complement(70..534)
                     /locus_tag="U0342_002956"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463854.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="superoxide dismutase"
                     /protein_id="HEM2424275.1"
                     /translation="MRKSRWLLILLLLIVLVALLACVDSGNGDVSGVPAKRGKQHFPP
                     TDTKKGWIELLATDGISSQGDLPCVYEEAESVEKLEVHMKELSTVSLTYVYIDGYIVQ
                     MEQGGGELSFQIQLSKAELKRGIHELTAVQYQENNPDTNKVELLKRANYEVK"
     gene            692..1465
                     /locus_tag="U0342_002957"
     CDS             692..1465
                     /locus_tag="U0342_002957"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734569.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="endonuclease/exonuclease/phosphatase family
                     protein"
                     /protein_id="HEM2424276.1"
                     /translation="MFSVTTFNIRFDDTSERKKSWELRKTLTKSLLDKYQWDFMGVEE
                     PLLPQMRDMKEMQDWDYFGVGRDDGFEKGEFTAVFYNSTRFTLLQEGHFWLSETPEVP
                     SIHSTAMFPRICVWGKLEDSTDGKQFYIFNTHLDHISEEARLFASQLLLHKASLIQED
                     LPVILLGDFNTEPSTPTYNLITQRYQDAQLLSKTPVKGPLGSFHDFQPLRPESELEKI
                     DYIFVSNEFHICSYETSTDEIDGCSASDHFPVMAVVGWT"
     gene            complement(1500..>1819)
                     /locus_tag="U0342_002958"
     CDS             complement(1500..>1819)
                     /locus_tag="U0342_002958"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463852.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="PH domain-containing protein"
                     /protein_id="HEM2424277.1"
                     /translation="DETIIQIFKFVRDEVIITSKGIFNVDAQGITGKKVEYKFFPKKA
                     LKYVSIETAGTLDRDFDLKIGVDGNTVVTQNTSFSAPISLKVHKNDTEMGFALYKMIK
                     EML"
BASE COUNT          568 a          358 c          293 g          600 t
ORIGIN      
        1 cacaaaaaaa gaatgtcatt tttcacattc tctttaaaaa tatggttatg aattgtttat
       61 tagtcttttt tatttcactt cataattagc acgttttaaa agctccactt tgtttgtatc
      121 aggattattt tcttgatatt gcacggccgt taattcgtga attcctcttt ttaattctgc
      181 tttacttaat tgaatttgaa aggaaagttc gccgccacct tgttccattt ggacgatgta
      241 gccatcaata taaacatagg tcaaactcac cgtacttaat tctttcatat gaacttccaa
      301 tttttctaca gattccgcct cttcataaac acaaggcaga tcaccttgac ttgaaattcc
      361 atccgtggca agaagttcta tccatccttt tttcgtatca gttggaggga aatgctgttt
      421 tcccctttta gccggcacac cggaaacatc tccattcccg ctgtccacgc atgctaataa
      481 tgccactaat actatcaata gtaataatat gagcaaccat cgactttttc gcaacatagt
      541 gacactccct ttttacaaca atacaatggt tttatttttc cagaaaaaat gtagaatata
      601 tactacataa aacccaaatc agtgaaacgt tttcataaat atgctaaact ctctttgtaa
      661 aacattccaa tgaaaagaag gatgtggaaa aatgttcagt gtaactactt ttaacattcg
      721 ttttgatgat acctctgagc ggaaaaagag ctgggaattg cgtaaaacac taacaaaatc
      781 attacttgat aaatatcaat gggatttcat gggagtggag gaaccccttc tgccacaaat
      841 gcgcgacatg aaagaaatgc aagattggga ttattttggt gtaggacgag atgatggttt
      901 tgaaaaagga gaatttactg ctgtttttta taattctact cgtttcacct tgttgcaaga
      961 agggcatttt tggctttccg aaacgcctga ggttccttcc attcactcaa cagccatgtt
     1021 tccacgaatt tgcgtttggg gaaaactaga agattcaacg gatggaaagc aattttatat
     1081 tttcaataca catttagatc atatctctga agaagctcgg ctattcgcaa gccaactttt
     1141 actacataaa gcgagcttga ttcaagaaga tttaccggta attttacttg gagatttcaa
     1201 tacagagcct agtacaccga cgtacaactt aataactcaa agatatcagg atgcgcagtt
     1261 actttctaaa actcctgtta aaggacccct tggtagtttt catgattttc aaccactccg
     1321 acctgaaagc gagctagaaa aaattgatta catctttgtg tctaatgagt tccacatctg
     1381 ctcttacgaa actagcacag acgaaataga cggctgttct gcttctgatc attttcctgt
     1441 gatggcagta gtaggatgga cataaaaaaa gagaagacga tattcgtctt ctcttctact
     1501 cataacattt ctttaatcat tttataaagc gcaaagccca tttccgtatc atttttatgt
     1561 acttttaagg aaattggtgc agagaaagat gtattttgtg tcacgactgt attgccgtca
     1621 acgccaattt ttaagtcaaa atcacggtcc aaagttccag ctgtctcaat agaaacatat
     1681 tttaatgctt tcttcgggaa aaacttatat tctactttct ttccagttat tccttgagca
     1741 tccacattaa aaatcccttt agaagtaata ataacttcat ctcttacaaa cttaaaaatc
     1801 tgaataattg tttcatctt
//
LOCUS       DASEAA010000281         1816 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.282, whole genome shotgun sequence.
ACCESSION   DASEAA010000281 DASEAA010000000
VERSION     DASEAA010000281.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1816)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1816)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1816
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.282"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..>1816)
                     /locus_tag="U0342_002959"
     CDS             complement(<1..>1816)
                     /locus_tag="U0342_002959"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="CDP-glycerol:glycerophosphate
                     glycerophosphotransferase"
                     /protein_id="HEM2424278.1"
                     /translation="LETLESIHEQTFDMYEVLLIDDGSTDKTIEMVTEYISDKPKFQL
                     HTQPNGGPASARNYGLRLANRMYICFVDSDDIIPNYALQLMYDGAISTGSKLITGATK
                     RFNSEGEWFIPMHIQYNIAKPGMKTLLKNPELFYSIGPCAKLYHHSLIDGVFFPENIR
                     YGEDQPFVLHALLQAENIYTVEKVVYYYRLRDGESQSLTQSVNKDPIRILKSVFQIFD
                     YGEAELLKNNTEYEIALKYYQRVSSVELWGALRAAIESKKSENQQIAFTMTLDWLKTK
                     SDDFLNIIPSFRYFLLFSSIERVRYITRDNKENYRQLITYLWERQGEEAKIAFRKAYP
                     IHMKAALQIMEHNNWGAARKISFKFIIRRKFKAPILIRKISRGIIFRLATLMPRKKDQ
                     VILATERSTSLEGNLLAIYDYLFYNDMPQKVYVFLRKNRNWFEMFQLYYALGRTKTIV
                     LDDYYNKIYGLKFNKKTHVVQSWHATGAFKKFGFSALEGTDANTEEFETRAHSPYTDV
                     LVSSEGIIPEYMEAFRKQANQIKPIGVPRTDVFFDQEYVAYTKEKYMKMYPQLRDKKV
                     LLYAPTFRGGPNERFNYSVVLDIAALKKELGDTHILILK"
BASE COUNT          560 a          342 c          285 g          629 t
ORIGIN      
        1 ttttaaaatt aaaatatgtg tatcaccaag ttcttttttc aaagcagcaa tatcaagtac
       61 aacgctataa ttaaagcgtt catttggccc accgcggaaa gttggcgcat atagcaacac
      121 ttttttgtcg cgaagttgcg gatacatttt catatatttt tcttttgtat atgccacata
      181 ttcttgatca aaaaacacat ctgttctagg cacaccaata ggtttaattt gattagcttg
      241 ttttctaaaa gcttccatat attcaggaat tatgccttct gaactaacaa gaacatctgt
      301 gtaaggcgaa tgagcacgtg tctcaaattc ttctgtatta gcatctgtac cttcaagcgc
      361 actaaagcca aactttttga aagcccctgt cgcatgccat gattgtacca catgtgtctt
      421 tttattaaat ttcaaaccat aaattttgtt gtaataatca tctaatacaa ttgttttagt
      481 tcgccctaat gcataataca attggaacat ttcaaaccaa ttacgatttt tccgtaaaaa
      541 cacatagact ttttgtggca tatcattata aaacaggtaa tcataaatgg ctaataaatt
      601 tccttctaag cttgtactac gttctgtagc taaaataact tggtcttttt tgcgtggcat
      661 caaagtagct agtctaaata taatgcctct gcttattttc cgaattagaa taggcgcctt
      721 aaatttacga cggataataa atttaaagga gattttacga gcggctcccc aattattatg
      781 ttccataatt tgtaaagcag ctttcatatg gataggatat gcttttctaa atgcaatttt
      841 tgcttcttcc ccttgtctct cccacaaata cgtaattagt tggcgatagt tttctttatt
      901 gtctcttgta atatagcgaa cacgttcgat actactgaac aacaagaaat atctaaagga
      961 aggaattata tttaggaagt catctgattt ggtttttaac cagtctaatg tcatcgtaaa
     1021 agcaatttgt tggttttcac ttttcttact ttcaatagcc gcccttaaag cgccccaaag
     1081 ctcaacacta gatactcgtt gataatattt taaagctatt tcatattccg tattattttt
     1141 gagtaactct gcttccccgt agtcaaatat ttgaaaaaca gattttaaaa tacgaattgg
     1201 atctttattt acagattgcg ttaatgattg cgattcacca tcacgtaagc ggtaataata
     1261 aactactttt tctacagtat agatattttc tgcttgaagt aaagcatgca aaacaaatgg
     1321 ttgatcttca ccgtaacgaa tattttcagg gaaaaacaca ccatctatca aagaatgatg
     1381 atagagtttc gcacaaggac ctatcgaata aaatagctcg ggatttttca gtagtgtttt
     1441 cattcctggc ttggcaatat tatattggat atgcatcgga atgaaccatt caccttctga
     1501 attaaagcgt ttcgttgcac ctgtaatcaa ttttgaacca gtggatattg caccgtcata
     1561 cattagttga agtgcatagt tcggaataat atcatcactg tccacaaagc aaatatacat
     1621 tctattcgca agacgcaacc cataattcct agccgaagct ggtccaccat ttggttgagt
     1681 atgcaactga aattttggct tatctgatat atattctgtc accatttcta ttgttttatc
     1741 cgttgaacca tcgtcaatta ataaaacttc gtacatgtca aatgtttgct catggatgct
     1801 ttcgagcgtt tccagg
//
LOCUS       DASEAA010000282         1807 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.283, whole genome shotgun sequence.
ACCESSION   DASEAA010000282 DASEAA010000000
VERSION     DASEAA010000282.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1807)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1807)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1807
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.283"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..98)
                     /locus_tag="U0342_002960"
     CDS             complement(<1..98)
                     /locus_tag="U0342_002960"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464321.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="NmrA family NAD(P)-binding protein"
                     /protein_id="HEM2424279.1"
                     /translation="MKIGIIGATGRAGSRILEEAKNRGHEVTAIVR"
     gene            complement(182..1102)
                     /gene="rarD"
                     /locus_tag="U0342_002961"
     CDS             complement(182..1102)
                     /gene="rarD"
                     /locus_tag="U0342_002961"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464322.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="EamA family transporter RarD"
                     /protein_id="HEM2424280.1"
                     /translation="MENKQNGQLGGIIAGALAYVCWGVLPIYWKLVTNVPPMEILAYR
                     IIWSFIFMLFLIVCLRKASMVFQETKDVLLKPKTLIAIIAAAFLVTANWYLFIYTVNS
                     GHVTEASLGYYINPLVNVLLATVILKERLSRGEIIAVISATIGVLILTWHLGSVPWAA
                     IGMAVTFSLYGLIKKVVSVSVWTGLTLETMIITPFALIYVIFFATNGLMQYAAQTNII
                     LVGAGVVTAIPLLLFATAAKKISYTMVGFLQYIGPTLMLALGVLLFKESFDHIQLFAF
                     MFIWLALIIFTISHIYSAAKIKQLANAAKK"
     gene            complement(1211..1741)
                     /locus_tag="U0342_002962"
     CDS             complement(1211..1741)
                     /locus_tag="U0342_002962"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464323.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="polyisoprenoid-binding protein"
                     /protein_id="HEM2424281.1"
                     /translation="MTVEKWNVDPAHSSIEFQVKHMMVSKVKGAFSDFTADIEMDPED
                     LTSAKLNFYVAAASVDTRQAQRDGHLKSEDFFNVEKYPNVTFSATKITADGDDEYEVT
                     GDLTIRDVTKPLTLEVSYEGTGKDPNTGNMVAGFEAKGKFNRKDFGLNYNAALETGGV
                     LIGDEVKLNIQIEASK"
BASE COUNT          552 a          364 c          332 g          559 t
ORIGIN      
        1 tttctaacaa tggctgttac ttcgtgaccg cgattttttg cttcttctaa aattctcgaa
       61 ccagctcggc ccgtagcacc aatgatacca attttcatga aaaaagcccc ctattcattt
      121 ttatggaata gattctcgtt tgatagaaga attattcccg aaagagggga ctgggaaaca
      181 tttatttttt tgcggcgttt gctaattgtt taattttggc tgcggaataa atgtgagaaa
      241 tcgtgaaaat aatcagtgct aaccaaataa acatgaatgc aaacaattga atatgatcga
      301 aactttcttt aaatagtaat acgccgagtg cgagcattaa tgttggtccg atatattgca
      361 ggaagccaac cattgtatag ctaatttttt tcgcagcagt ggcaaacaga aggagtggta
      421 tagctgtaac gacaccagcg ccaactaaaa taatattggt ttgtgccgcg tactgcatta
      481 atccattggt cgcgaaaaag attacataaa taagcgcgaa tggcgtaata atcattgtct
      541 caagggttaa accagtccaa acagatacgg aaacgacttt tttaattagc ccataaagcg
      601 agaaagtaac cgccataccg attgccgccc aaggaacaga tccaagatgc catgtgagga
      661 ttaaaacacc gatagtagca gaaataacag caataatttc gccacgactc aagcgctctt
      721 ttaagataac tgttgcgaga agtacgttta caagtggatt gatgtaataa ccaagacttg
      781 cttcggtcac atgcccacta ttcaccgtat aaatgaataa ataccagttt gctgtcacta
      841 aaaaagctgc cgcaataatc gcaatcagcg tttttggttt aagcaatacg tccttagttt
      901 cttgaaaaac catcgaagct tttcgcaaac aaacgatcaa aaataacata aaaataaaag
      961 accatataat tctataggcc aaaatctcca ttggtgggac atttgtgact agcttccagt
     1021 aaatcggaag gacaccccaa catacataag cgagagcgcc agcgatgatt ccgcctagct
     1081 gtccattttg tttattttcc atagcgatgt tagccccctt tttttaaaca atagaactat
     1141 tttagcttaa aagggggaat aaagctacaa aaaaaactac gaataggcta gctattcgta
     1201 gtttctacaa ttatttgctt gcttcgattt ggatgtttaa tttcacttcg tcgccaataa
     1261 gtacgccacc agtttctaac gcagcattgt aattaaggcc aaagtctttg cggttgaatt
     1321 taccttttgc ttcaaagcca gctaccatgt tgccagtatt tggatctttt cctgttcctt
     1381 cgtagcttac ttctagtgta agaggtttgg ttacgtcgcg aatagttaag tcaccagtca
     1441 cttcgtattc atcatcgccg tcagctgtaa tttttgttgc cgaaaaagtc acgtttggat
     1501 atttttctac attaaagaag tcttcgcttt tcaaatgtcc atcacgttgc gcttgacgag
     1561 tgtcaacaga agcggctgca acgtagaagt ttaattttgc agaagttaaa tcttctggat
     1621 ccatttcgat atccgctgtg aaatcgctaa atgcaccttt tacttttgat accatcatgt
     1681 gttttacttg aaattcgatt gaactatgcg ctgggtctac gttccatttt tctactgtca
     1741 ttgtttcatt cctccaaata tgttttttta taaaagcatt ctcttttaat ctagcctaaa
     1801 tcctaag
//
LOCUS       DASEAA010000283         1797 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.284, whole genome shotgun sequence.
ACCESSION   DASEAA010000283 DASEAA010000000
VERSION     DASEAA010000283.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1797)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1797)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1797
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.284"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            288..1760
                     /locus_tag="U0342_002963"
     CDS             288..1760
                     /locus_tag="U0342_002963"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463793.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="InlB B-repeat-containing protein"
                     /protein_id="HEM2424282.1"
                     /translation="MKQRKTSLLHVLLVVTAILGISLWVNASHGMEAQAESIAQPAPI
                     NEIFTDPALAEAVKTELGKADVSDVVSQADLDQITKIDAEGKGISSLEGIQYLTNLNS
                     LSVTSNQISDISPLTNLTKLDSLYLGENQISDLTPLSRLTTLTFVQLSINQIKDVTPL
                     ANLTNLTYLDLRENQISDASPLVNMTNLTVLHLEKQQITADPVVYQTNLVAPDILKNA
                     YGEVVPPTTISNNGTFASPNITWNLDSFTSEVSYDFNQKITLGDNGKVTFAGTVVQPI
                     VEAPVNYITTFDVDGTTTTENVAVDSLITEPAAPTKEGYTFSGWYDAETGGNEWDFAV
                     DKMPATNMTLYAQFTINSYTAAFDVDGETTNQKVDYQALLQEPTAPTKDGYTFVGWYD
                     AKTGGNEWNFATDKMPAGDVTLYARFTKNASSDNSQIAPGNDDKNDKDNLTIKANDSA
                     NATSTKLPKTSDDSSMVPTVLGTLFIGGALLILRKKTTNI"
BASE COUNT          633 a          334 c          352 g          478 t
ORIGIN      
        1 aagatttaga ttaataggta gagtacagcc ccgctttggc ggggctgttt ttttacgcta
       61 cttcccacaa gaaaccaatc ccgcactcac tgaacaaaaa aattcgatta atcgccacat
      121 ctttcgcgca gaagggtcca attcgggaaa aaatggcgtg catcttctgt tataattatt
      181 caccaaagac tagtaatatt ttacgccaag tcatccaaga tagtacagat tcaaggtgta
      241 tttaatgatg gattatctac tcagtcaaat tataaggaga cgataaaatg aaacagagaa
      301 aaacctcatt actacatgtt ttacttgtag taacagctat cttgggtatt agtttatggg
      361 taaatgccag tcacgggatg gaagctcagg cagagagtat tgcgcaacca gcgccaatta
      421 acgaaatttt cacggacccg gcattagcag aagcggtgaa gacagaactt ggaaaagcag
      481 atgtttctga tgtagtaagt caagcagact tggatcagat aactaagatt gatgcagaag
      541 ggaaaggaat aagttcgtta gaagggatac aatatctaac aaatctcaac tctttaagtg
      601 taacctccaa tcagatttct gatatttccc cgctgacgaa ccttactaaa ttagactctt
      661 tatatttagg ggaaaatcaa ataagtgatt taactccgct ttcaagattg accactctga
      721 cattcgtaca attatctata aaccaaataa aagatgtgac acctctagct aatctaacga
      781 atctaactta tttagattta cgcgaaaatc aaataagtga tgcaagtcct ttagttaata
      841 tgaccaactt aaccgtatta catttagaaa aacaacagat aacggctgat ccagttgtat
      901 accaaactaa tttagttgca ccggatattt tgaaaaatgc ttatggtgag gtagtaccac
      961 cgacaacgat tagtaataac ggaacatttg ctagtccaaa tatcacttgg aatttagata
     1021 gtttcacaag cgaagttagt tatgatttta atcaaaaaat tacacttggt gataatggga
     1081 aggtaacttt tgcaggaact gttgttcaac cgatagtaga agcaccggtc aattacatta
     1141 ctacatttga tgtggacgga acgacgacaa cggaaaatgt ggcagtggat tctttaataa
     1201 ccgaaccagc tgcgccaaca aaagaaggtt atactttctc tggatggtat gatgccgaaa
     1261 ctggtggaaa tgaatgggat tttgcagtag ataaaatgcc cgctaccaac atgacgctct
     1321 acgcccagtt cacaataaat agctacacgg cggcatttga tgtggacgga gaaacaacta
     1381 atcaaaaagt agattaccaa gctctactac aagaaccgac tgccccgacg aaagatggct
     1441 acacatttgt aggatggtac gatgcaaaaa caggtgggaa tgaatggaat ttcgcaacag
     1501 ataaaatgcc agcgggtgat gtcactttat atgctagatt tactaaaaat gctagctcag
     1561 acaattctca aatagccccc ggaaatgatg ataaaaacga taaagataat ctaacaatta
     1621 aagctaacga tagtgcaaat gcgacgagca ctaaacttcc aaaaacaagt gacgattcaa
     1681 gtatggttcc tactgtttta ggaacgctct tcatcggagg cgcattacta atcttacgaa
     1741 aaaaaactac taacatttaa gataaagtag atttggtttc tattttccgt agagacc
//
LOCUS       DASEAA010000284         1790 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.285, whole genome shotgun sequence.
ACCESSION   DASEAA010000284 DASEAA010000000
VERSION     DASEAA010000284.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1790)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1790)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1790
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.285"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..699)
                     /locus_tag="U0342_002964"
     CDS             complement(<1..699)
                     /locus_tag="U0342_002964"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM2424283.1"
                     /translation="MVFFQRTNWKEDGEFLIRVASLLEKGFSLDATISYLSITSPKYR
                     KRYEQIITSLANGNSFSYALSKNGFPEFICSQLHYASSHGYFLQTIHETGVHMKRKAE
                     EKNALMKTFQYPLVLFSTVILVFFLLRIFLLPKFELLFTQLSTNGTVGTKFTYFLLEK
                     IPVLLGIFLLSLFLIFSFLIRKQKQKNAYDRAYFYCRIPYIRQFSRIHYSQYLSRELG
                     YLLKSGLSITHIMHL"
     gene            complement(677..1699)
                     /locus_tag="U0342_002965"
     CDS             complement(677..1699)
                     /locus_tag="U0342_002965"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464872.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="type II/IV secretion system protein"
                     /protein_id="HEM2424284.1"
                     /translation="MPQKMTEHIITQALRVHASDVHIHPLSNRYLLRLRVNGTLIPLL
                     YLPIDVGEKLISFLKFQAALDISEKRRPQSGSFEKNTNTEKIAIRLSTMPSKDFHESM
                     VIRIFRYKYPIPFLKSSVFPRSTNQIQQQCKNQTGLFLFSGSTGSGKSSSMYSLVSSI
                     ENKDELQIITIEDPVEHHSPGFLQIEVNEKASITYAPIIRSVLRHDPDILIIGEIRDA
                     ETAKIVVRAALTGHLVLSTVHAGDAYGVLLRLLEFGISSEELAQCLLGISFQKLTHLV
                     CTFCGEKCHPLCTHLHRKRTAIYEVLTQQEIKAYFQSNKQQIKPKYPIKRTFEKGVAY
                     GFFSAH"
BASE COUNT          572 a          288 c          361 g          569 t
ORIGIN      
        1 gaggtgcata atatgcgtta tagataaacc gcttttcagc agatatccaa gttcgcgcga
       61 aaggtattgc gaataatgaa ttcttgaaaa ttggcgaata tatggaattc gacaataaaa
      121 ataagctcgg tcgtaagcat ttttttgctt ttgttttcga ataaggaaac tgaagattag
      181 aaaaaggcta agtaaaaaaa ttcctaataa aactggaatt ttttcaagca ggaaataagt
      241 gaatttagtt ccgactgtgc cgttagttga taattgtgta aataaaagtt cgaatttagg
      301 taagagaaaa attcgaagca agaagaacac cagaataaca gtagagaata agactagtgg
      361 atattggaag gtcttcatta atgcgttttt ttcctccgct tttcttttca tatggacgcc
      421 ggtttcgtga attgtttgca aaaagtaacc gtgactagaa gcataatgaa gttgtgaaca
      481 aatgaattca ggaaatccgt tttttgaaag agcataggaa aaagaatttc cgtttgcaag
      541 tgaagtgata atttgttcat atcttttgcg atatttgggc gaagtaatgc ttaaatagct
      601 aatggtcgca tctaatgaga atcccttttc gagtaaactg gcaactctaa ttaaaaattc
      661 tccgtcctct ttccaattag tgcgctgaaa aaaaaccata ggcaactcct ttctcgaatg
      721 ttcttttaat agggtattta ggcttaatct gctgtttatt agattggaaa taggctttta
      781 tctcttgttg cgtaagaact tcatagatag ctgttctttt tcggtgcaaa tgtgtacaaa
      841 ggggatggca tttttctccg cagaaggtgc aaactaggtg tgtcagcttc tgaaaactga
      901 ttcctagtaa gcattgcgct aattcttctg agctaatacc gaattcaagt aatcttaata
      961 aaactccgta agcatctccg gcatgaaccg tgcttaaaac taagtgaccg gttaatgcag
     1021 cacgaacaac tattttagcg gtttctgcat cgcgtatttc cccgataatt aaaatatcag
     1081 gatcatggcg taagacggag cgaatgatgg gtgcataggt aatgcttgct ttttcgttca
     1141 cttcgatttg gagaaagccg ggagaatgat gttcaacagg atcttcaatt gtaatgattt
     1201 gcagttcatc tttattttct atagaagaaa caaggctata catagaactg gacttaccac
     1261 tacctgtgct accggaaaaa agaaacaagc ctgtttggtt tttacactgt tgttgaattt
     1321 gattagtgga tctaggaaaa acactagatt ttaaaaatgg gatagggtac ttgtaacgaa
     1381 aaattcgaat gaccatgctt tcatgaaaat ctttgctagg catagtagaa agccgtatag
     1441 caattttttc tgtgtttgta tttttttcaa agctaccaga ttgaggtcgt cttttttcgc
     1501 ttatatccaa agctgcttgg aatttaagaa aagatattaa cttttcccct acatctattg
     1561 gaaggtaaag aagcggaatc aatgtcccgt ttacccgaag acggagtaag taacggtttg
     1621 agagtggatg aatatgaaca tcacttgcat ggacacgtaa tgcttgagtt atgatgtgtt
     1681 ctgtcatttt ttgcggcata agaacctcct tacaagtcat attcctcaaa agtaaacaaa
     1741 atcctttgtg tcccaatctt tcacaaaaac gaaaatagta ttttctaaat
//
LOCUS       DASEAA010000285         1786 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.286, whole genome shotgun sequence.
ACCESSION   DASEAA010000285 DASEAA010000000
VERSION     DASEAA010000285.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1786)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1786)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1786
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.286"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..647
                     /locus_tag="U0342_002966"
     CDS             <1..647
                     /locus_tag="U0342_002966"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM2424285.1"
                     /translation="SFSKYETYDYLMYIQRMIKKFGLEASNRESYLNVRNHYNSLPIA
                     DRDPRLLYTVILYGFQQQIRFNSDYDFNNPVGMRWFNDRVLEKMVSFSRAIKEENFEF
                     TSRSFEDYIDEIDSNTFVYMDPPYMLTNGSYNDGKRGFGGWTTEHEQKLMDFADELNR
                     RGIKFMISYVLEHQGEVNDRMKDWLEYRLYKLINLNPIPGRKRKEVVIINYDLS"
     gene            634..>1786
                     /locus_tag="U0342_002967"
     CDS             634..>1786
                     /locus_tag="U0342_002967"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726064.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM2424286.1"
                     /translation="MTYHEVPHIVIKNNSQKGGYFFEDILTEEILTDVCRKVTGTSEY
                     TVEFDNEGGYNKGRLATISYKGSKIYVSFSQAGKVEGRNYNFQSLTTALVRFYRGSRH
                     SSRICFYFLPQEGNRETEYFSFMYRVMATAGVEFINDEQYLTQTIEKFANVQDIINAR
                     DRLREGKRNNNSSYLTKSEYGVAEIYAKTYGANKKEAVLISLAASHISKKIRIYEIRE
                     QNISVLPKPDKEALEMLPNVEIINTDMQIEIREFVGRNSLRSPRYIFNLLDRLGPKKC
                     TLCDCEIPELIEGAHIWPVADIKADKSIPNDQKLNYAIDGHNGIWLCENHHKMFDEGL
                     IRIEHDGTIRLKDDLNDNDKSFIITTTTNTLLPDGVISEEAEIYLAKRDE"
BASE COUNT          680 a          220 c          350 g          536 t
ORIGIN      
        1 agtcgttcag taaatatgag acatatgatt atttaatgta tatccaaaga atgattaaaa
       61 aatttggact ggaagcatcc aacagagaaa gttatttaaa tgtacgaaat cattataatt
      121 cattacctat cgctgacaga gatccacgtc tattgtatac cgttatttta tatgggtttc
      181 agcaacagat tcgatttaat agtgattatg attttaataa tcctgttgga atgagatggt
      241 ttaacgatag ggttctagaa aaaatggtga gtttttcaag agctattaaa gaggagaatt
      301 ttgaattcac aagccgtagt ttcgaagact acattgatga gatagattca aataccttcg
      361 tctatatgga ccccccatac atgttaacta acggatctta caatgatgga aaaagaggtt
      421 tcggtggttg gacaacagaa catgaacaaa aacttatgga ttttgcagat gagttaaata
      481 gaagaggtat aaaatttatg atttcttatg tactagagca tcaaggagaa gtaaacgatc
      541 gaatgaaaga ctggttagaa tataggcttt ataaattaat taacttaaat cccattcctg
      601 gaagaaaaag aaaggaggtt gtaataataa actatgactt atcatgaagt tccccatatt
      661 gttattaaaa ataactctca aaaaggtggt tattttttcg aggatatttt gacagaagaa
      721 attttaacag atgtttgtag gaaggtaaca ggtacatccg aatatacagt cgaatttgat
      781 aatgaaggag gatataataa aggaagacta gctactattt catataaagg tagtaagata
      841 tacgtgtctt tctctcaagc aggaaaagtt gaaggacgaa attataactt tcaaagttta
      901 acaactgctc tagttaggtt ttatagagga tctaggcata gtagtagaat ttgcttctat
      961 tttctccccc aagaaggaaa tagagagact gaatattttt cttttatgta tagggtgatg
     1021 gctacagcag gtgttgaatt tattaatgat gaacagtatt taacacaaac gattgaaaaa
     1081 tttgcaaatg ttcaggacat aattaatgct agagacagac ttagagaggg aaaaagaaat
     1141 aataattcct cttatttaac taaaagtgag tatggtgtag cagagatata tgcaaaaaca
     1201 tatggtgcaa acaaaaagga agcagtactt atatcgcttg cagcttcaca tatttctaaa
     1261 aaaattagaa tctacgagat aagggaacag aatatatctg ttttgccaaa accagacaaa
     1321 gaagccttag aaatgttacc gaatgtagaa attataaata ctgatatgca gatagaaata
     1381 agagagtttg taggaagaaa tagcttaagg tctccaagat atatatttaa cttattagat
     1441 aggttaggtc ctaaaaaatg cactttatgt gattgtgaga ttccagaatt aattgaaggg
     1501 gcacatatct ggcccgttgc tgatattaaa gcggataaat ctataccgaa tgatcaaaaa
     1561 cttaattatg cgattgatgg acacaatgga atttggttat gtgaaaacca tcataaaatg
     1621 ttcgatgaag gtttaattag aattgaacat gacggaacaa ttagattaaa agatgatttg
     1681 aacgataatg ataaaagttt tattattact acaacgacaa acacactttt acctgatggt
     1741 gtaattagtg aggaagcaga aatatatcta gccaaaaggg atgagg
//
LOCUS       DASEAA010000286         1770 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.287, whole genome shotgun sequence.
ACCESSION   DASEAA010000286 DASEAA010000000
VERSION     DASEAA010000286.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1770)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1770)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1770
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.287"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..146)
                     /locus_tag="U0342_002968"
     CDS             complement(<1..146)
                     /locus_tag="U0342_002968"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424287.1"
                     /translation="MEKLFTYKEFVDMMQKYGIRHTKRKLRRGENLMENASKFSNVVL
                     LIDG"
     gene            514..1461
                     /locus_tag="U0342_002969"
     CDS             514..1461
                     /locus_tag="U0342_002969"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar-binding transcriptional regulator"
                     /protein_id="HEM2424288.1"
                     /translation="MKWEEKRDMVKIATWYYHYGWTQAQIAKKIGISRSIISKTLQRA
                     KDLGIVEIFIKDETYYTVDLEQKLEEKFGLEEAIVVATHDMSEEEALNFLAKEAAYTL
                     SKRIAKVKTLGISWGKTIRKFANEFPFIPHKDLTIIPLIGGMGSSDIDLHSNQICYDL
                     KKKMKCHSKYLYAPALVEDTEMKTDLSKNKYISEVLEEGKTVDMAIVGVSSPYNHSTM
                     EEIGYINSEDIEELRYKDVVGDINSRFFTADGKEAKTEINTHVIGLSLEELKNIPTVV
                     ALANGLQKKEALVAALNAGLIDVIVITDRMAEYILQKND"
BASE COUNT          639 a          291 c          309 g          531 t
ORIGIN      
        1 taaccatcta ttagtaaaac aacattacta aatttagaag cgttctccat taaattttcg
       61 ccacgtctta gcttgcgttt cgtgtgtcta atcccatatt tttgcatcat gtcaacaaac
      121 tctttatatg taaataactt ttccactata gcccactcct tttctaaaat aatttagtaa
      181 gcgatatata agttgggcga gaactcaact tatgttacca tgtgcggctt ggcagatttt
      241 ctccatagag atggaataat gatatttctt ctagaataat tctaaaaaaa tttggtgaat
      301 tcctcgtaaa taagaaaaaa agttgtttgt ttttttgtca caaataaata gtatgcacac
      361 tgtctatttc aaaattactc ctttttcggc aaaaacgatg ttcctatcta ccccaacttt
      421 tcataaagca aattctatga tactattagc ataaaaacat ttgtgacatc gtataacttt
      481 tgttccatta tgatgtaaat ggaggtaagt agaatgaaat gggaagaaaa aagagatatg
      541 gtgaaaatcg ctacgtggta ctatcactac ggctggaccc aagcgcaaat cgccaaaaaa
      601 atcgggattt caagatccat tatctctaaa actttgcaac gcgcaaaaga cttaggcatt
      661 gtggaaatct ttattaaaga cgaaacttac tatacggtag atttagaaca aaaattagaa
      721 gaaaagtttg gtttagagga agcgattgtc gttgcaacgc acgatatgtc tgaggaagaa
      781 gcactgaatt tccttgccaa agaagctgcc tatacactga gtaaaaggat tgctaaagta
      841 aaaactctcg ggatttcatg ggggaaaaca attcgcaaat ttgctaatga attcccattc
      901 atcccgcata aagacttaac aattattccg cttataggtg gaatgggctc gagtgatatt
      961 gatctgcatt ccaatcaaat ttgttatgat ttaaagaaaa aaatgaaatg ccactccaaa
     1021 tatttgtatg cgcctgcgct cgttgaagat acggaaatga aaaccgattt atccaaaaac
     1081 aaatatatta gcgaagtatt agaagaagga aaaacggttg atatggctat tgtcggtgta
     1141 tcgagccctt ataatcacag cacaatggaa gaaatcggct atattaattc tgaagatatt
     1201 gaagaactac gctataaaga tgttgtcggt gatattaatt cacgcttttt cacagcagac
     1261 ggaaaagaag caaaaactga gattaacacc catgtaatcg gtcttagtct agaggagttg
     1321 aagaacatcc ccaccgtcgt cgcacttgca aacggattac aaaaaaaaga agcattagtg
     1381 gcagctctta atgccggatt gatagatgtg attgtgatta ctgatagaat ggccgaatac
     1441 attcttcaaa aaaacgacta aaaaataatc ctaactataa aatttaaaat atccaaaagc
     1501 tctctcccgc aaaggaatga gcttttttta tttctcaaaa aataaaaaaa gctaatattt
     1561 cattgacgaa aaaatgttaa agtgttatat ttaatttgtg aaatatgaca tttgtcacta
     1621 taggtgacaa atgttacaaa attcatttgt taggataaaa tagctttatc cggagtttta
     1681 ttttaataaa tgaaaacgat tactaggagg aacttgaaat gactttatat agacagttac
     1741 ttgctcgtga gaacgaaaat aatccgattc
//
LOCUS       DASEAA010000287         1728 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.289, whole genome shotgun sequence.
ACCESSION   DASEAA010000287 DASEAA010000000
VERSION     DASEAA010000287.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1728)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1728)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1728
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.289"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            35..373
                     /locus_tag="U0342_002970"
     CDS             35..373
                     /locus_tag="U0342_002970"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734189.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2424289.1"
                     /translation="MLKRNVQKGMISLIANMMFLSMFSFTNLNSIKTVEAATTAYNTI
                     EYNKSVNLDANIAYPETNAFWSAPYYSEGSTFISSATAPSYAKREAKTERGIYYQVKL
                     GDKIIGWLDK"
     gene            392..967
                     /locus_tag="U0342_002971"
     CDS             392..967
                     /locus_tag="U0342_002971"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725628.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2424290.1"
                     /translation="MPSTDIAYSRTGKITNTSGHAVWTQPCGQINSTLKGPASDYLNK
                     EITIWRKVENKRGTYYQFSETKTPNIKAWLDARAITLYDQVHFNEEYNQMAVISTVIG
                     HAVWSTPYLQSDSKLIAPASNYEGKRVEIIRRAKTTRSIYYQFSYDNKVIGWLDTRAF
                     SLIPSNTAMVISNSTNDIFSNITDAYNKKTL"
     gene            1003..1689
                     /locus_tag="U0342_002972"
     CDS             1003..1689
                     /locus_tag="U0342_002972"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681000.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2424291.1"
                     /translation="MDESNSDDNLGNYVKISQDNKPIGWIDSENVIDEKTMDSIENDE
                     ESIIPEELIDKVNDYVTIENNEFVLSNKAEDVLTSEEFVEVEGQIDQTNAEIEADETL
                     SETHIEGNIIVQEIYEDEPNQLLKASKKAYIKAKYTWWGMQIQFSHKAVVDFNDFYWG
                     AGTIGGLGANKRMGKFLAKKGIKIASRYAVCLSLFGGGLAWGMGKKDKGKGVNLNCVL
                     YVPATITTAK"
BASE COUNT          691 a          223 c          311 g          503 t
ORIGIN      
        1 tataatacat ataaatgaaa gagggaacaa aatcatgtta aagagaaatg tacaaaaagg
       61 gatgattagt ttaattgcaa atatgatgtt tttatcaatg ttcagtttta caaatttaaa
      121 ttctattaaa actgtagagg ctgcaacaac tgcgtacaat acaattgagt acaataaatc
      181 agttaattta gatgctaata ttgcatatcc agaaacaaat gcattttggt ctgcaccata
      241 ttattcagaa ggatcaacat ttatatcaag tgcaactgca ccttcttatg caaaaagaga
      301 ggcaaaaact gaaagaggaa tttactatca agtaaaattg ggagacaaaa ttattggttg
      361 gcttgataaa tgagctttta aattttatga aatgccttct acggatattg cttactcaag
      421 gaccgggaaa atcactaaca cttctggaca tgcagtatgg actcaacctt gcggacaaat
      481 aaactctact ttaaaaggac cagcaagtga ttatcttaac aaagaaataa ctatttggag
      541 aaaagtagaa aacaaaagag gtacttatta tcaatttagt gaaaccaaaa ctcctaatat
      601 aaaagcttgg ttagatgcaa gagccataac actctatgac caagtacatt ttaatgaaga
      661 gtacaatcag atggcagtta tatctacagt tattggacat gcagtatggt caacacctta
      721 tcttcagtcc gatagtaaat taattgcgcc tgcttctaat tatgaaggaa aaagagttga
      781 aataatcaga agagccaaaa caacaaggtc aatatattat caatttagtt atgataataa
      841 agtaattggt tggttagaca ctagggcttt ctcattaata ccttcaaaca ctgctatggt
      901 gataagtaat agtacaaacg acattttttc aaatataact gatgcatata ataaaaaaac
      961 cctataaata attctcaaaa ttattctcaa caatttgtta atattgatga aagtaattct
     1021 gatgataatt tgggtaacta cgttaaaata agccaagata acaaacctat tggttggata
     1081 gactctgaaa atgtaattga tgaaaaaact atggattcta tagaaaatga tgaagaatca
     1141 attattccgg aagaattaat tgataaagta aatgattatg taacaataga aaacaatgaa
     1201 tttgtattgt ctaacaaagc ggaagatgtt cttacttcgg aagagtttgt tgaagttgaa
     1261 gggcagatag atcaaactaa tgctgaaatc gaagctgatg aaacactatc agaaacacat
     1321 attgagggaa acataatagt tcaagaaatc tatgaagatg aaccaaatca acttcttaag
     1381 gcatctaaaa aagcttatat aaaagctaaa tatacatggt ggggtatgca aatccaattt
     1441 tctcataaag ctgttgttga ttttaacgat ttttattggg gggcaggtac gataggtgga
     1501 ttaggtgcaa ataaacgaat ggggaaattt ttagcaaaaa aaggaataaa aatcgcatca
     1561 cgttatgctg tttgtttgag tttatttggt ggtggtttag catggggaat gggtaaaaaa
     1621 gataaaggaa aaggtgtaaa tttaaattgt gtattatatg tccctgcgac aataactaca
     1681 gctaaataaa agaaaagagt gtatacatga aaagaaataa actaaaga
//
LOCUS       DASEAA010000288         1663 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.290, whole genome shotgun sequence.
ACCESSION   DASEAA010000288 DASEAA010000000
VERSION     DASEAA010000288.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1663)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1663)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1663
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.290"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..665
                     /locus_tag="U0342_002973"
     CDS             <1..665
                     /locus_tag="U0342_002973"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463858.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424292.1"
                     /translation="QIHLQNHYDATSRQVQKKEIKVLKKHNNLLNGEVFPYQICLEST
                     MEYSRFMLWFEKEVQKIVKELWNQHFIIKLTLSQLHFRETILFLEHLKDFSKRITIEF
                     IGEDTPEIKKHFSVQEQEAFFIGKLRMLKKWKFIISKHIEGCSVEQTLAFTPCLHEIK
                     YTMSQQARMEENIIDLHMFIDFWEYWATHKKLKFVVEVKEKDFITKSLMHKKVHVQFE
                     NA"
     gene            complement(820..>1663)
                     /locus_tag="U0342_002974"
     CDS             complement(820..>1663)
                     /locus_tag="U0342_002974"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="LapB repeat-containing protein"
                     /protein_id="HEM2424293.1"
                     /translation="LSCNNNQLTNLAVGETILDVSCNNNQLKDISSLPDYLTAENGEY
                     QAMDQTLVGPIQTTQNNTLVYAVPTDLLDKDGNIVSIIKPENGGVYDAATRTITWENL
                     PDSGEVSYTFESNDYGVFSGRVTVPYTGKETVSISSDDEISYKEGTTKTEEAFLTDIH
                     ASVTPATETITSNFADVVDLQTPGKYVVTLSVAESDITKDVIVYVTEEPSKDNPVAPV
                     PPKDPDNKVADNDQNTEKPQVKVDEKTLPKTGDITSLSLSLAGIICLSFGILFFIKRK
                     KKTV"
BASE COUNT          534 a          283 c          291 g          555 t
ORIGIN      
        1 atcaaatcca tttacaaaat cattacgatg caacgagtag acaagtgcaa aagaaagaaa
       61 taaaagtctt aaaaaaacac aataatttat taaatgggga agtttttcca tatcaaattt
      121 gtttagaaag cacgatggaa tattcaagat ttatgttgtg gtttgaaaaa gaagtccaaa
      181 aaatcgtgaa agaactttgg aatcaacatt ttattatcaa actaacatta tcccaattac
      241 atttccgcga aaccattcta tttttagagc atttaaaaga ttttagtaaa cggataacga
      301 ttgaatttat cggtgaagac acaccagaaa ttaaaaaaca tttttctgtc caagagcaag
      361 aagcgttttt tatagggaaa ctaagaatgc taaaaaaatg gaaattcatt atttctaaac
      421 atatcgaagg ctgctcagtg gaacaaaccc ttgcttttac cccgtgtcta catgaaataa
      481 aatacacgat gagtcagcaa gcacgaatgg aagaaaatat tatcgatttg cacatgttca
      541 tcgatttttg ggaatattgg gcaacacata aaaaattgaa attcgtagtc gaggtgaagg
      601 agaaagattt tattacgaag tctttgatgc ataaaaaggt ccacgtacaa tttgagaatg
      661 cgtagcggaa gaattatagc cgagctctgt ttattctatc actcaagaag cctgagggag
      721 ctttttgact gtattttttt gccaataagt aatctgaaaa gtagatattg atagaataaa
      781 aaatagtctt atcacttatg ataaggctat tactcattat taaactgttt ttttctttcg
      841 tttgatgaaa aatagaatac caaagcttaa gcaaataatt ccagccaatg acaaacttaa
      901 gctagtaata tcacctgttt ttggcaacgt cttttcgtct acttttactt ggggtttttc
      961 cgtattttgg tcattgtctg ctactttgtt atctggatct tttggtggaa caggagcgac
     1021 aggattatct ttacttggtt cctctgtcac atacacaatg acgtctttcg taatatctga
     1081 ttctgccacg cttagtgtta caacatattt accaggtgtt tgtaagtcta ctacgtcagc
     1141 aaaattgcta gtgatggttt ctgttgctgg agttacgctt gcatggatat ctgtgaggaa
     1201 ggcttcctct gtttttgtag tgccttcttt gtaactaatc tcatcatcac tagaaatgct
     1261 gacagtttct tttcctgtat atggcacagt aactcttcca gaaaacacac catagtcatt
     1321 gctttcaaat gtgtaactca cttctccgct atctggtaaa ttttcccacg taatagttct
     1381 agtagctgca tcataaaccc caccattttc tggttttatg atggaaacaa tgttaccatc
     1441 cttatctaac aggtctgtag gaacagcgta tacaagtgta ttattttgtg tcgtttggat
     1501 tggacctact aatgtttgat ccattgcttg gtactcgcca ttctcagcag taagataatc
     1561 tggtaaggaa ctaatatctt ttagctggtt attattacag cttacatcca atattgtctc
     1621 tccaacagct agattcgtta gttgattgtt attacaagat aaa
//
LOCUS       DASEAA010000289         1645 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.291, whole genome shotgun sequence.
ACCESSION   DASEAA010000289 DASEAA010000000
VERSION     DASEAA010000289.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1645)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1645)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1645
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.291"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            471..1121
                     /locus_tag="U0342_002975"
     CDS             471..1121
                     /locus_tag="U0342_002975"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743336.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424294.1"
                     /translation="MNNRNWLKGLGVTMIAATLILTGCGNGDAEKTDTKEQTKSVEEE
                     GKKVKIESNEGKPQHEQLITVKLPPEADYLNDETLEVYEQDKKKYDQTEQLITNDSIT
                     LLIGDYGYYDPVQDAIECSAVIVNGTKTEIKDLSFQVSIENNVMQGRVFLDNSVPELT
                     KEQTGNFKPSMGIPVILGFPEEKPTDEIENGRKIDTKNIKINLSDIQYKVVEQEGK"
     gene            1121..1435
                     /locus_tag="U0342_002976"
     CDS             1121..1435
                     /locus_tag="U0342_002976"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724894.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="toxin B"
                     /protein_id="HEM2424295.1"
                     /translation="MGEEIKIDPHFLKKVENNVNSYIKAQKEVSIALLAVRNNLASNF
                     SGVACNEIKNYITELMNDLEKEFGVFITKNHEKVKALEESYKELDSQLGQTFNYGMER
                     TK"
BASE COUNT          689 a          176 c          344 g          436 t
ORIGIN      
        1 atgaacgata tgaacggcaa gcgagcgtcc gtggtttttt agcaacataa attattacag
       61 aaatatggga ctggtaaaaa gaacgagagt aaagttaaaa acttggttga tgattggaga
      121 tatatcgctt tccataaaaa atatagaaaa gagatggaat ttgatccgaa aatcaatcaa
      181 gacggaataa aactgttcca ccagacttta aactctgatt gtgtagagat ataaagtaat
      241 ttgggtagtc taagatggaa aatttatctt agactactta atgtacataa ggattttgag
      301 gtttgaaaag agtatttttg gttgaaaaca aagaaaaaat tgtacatata taattataag
      361 ttcaaatttg aacaagtaga gtagtgagat tttctaaagt attgaaggga agcacgaatt
      421 aacagtatca aaattaatag aataagacat aaaaaataag aggttacaac atgaataata
      481 gaaattggtt aaaaggatta ggagtaacaa tgattgccgc cactttaatt ttaacgggat
      541 gcggaaatgg agacgctgaa aagacagata caaaggaaca gactaaaagt gttgaagaag
      601 aaggaaaaaa agtaaagatt gagagtaatg aagggaaacc acagcatgaa cagcttataa
      661 cagtgaagtt gccgccagaa gcagattatt taaatgatga aacgttagaa gtgtatgagc
      721 aagataaaaa gaagtatgac cagacagagc aactaattac taatgattca atcacattac
      781 taatcggaga ctatggatat tatgatcctg tgcaggatgc tatagaatgt tctgctgtaa
      841 tcgtaaatgg tacaaaaaca gaaattaaag atcttagttt tcaagttagt attgagaaca
      901 atgtaatgca aggtagggta tttttggaca attcagtacc ggaacttaca aaagaacaaa
      961 caggaaattt taagcctagt atgggtatac cggtaatttt agggtttcca gaagaaaaac
     1021 cgacagatga aatcgaaaat ggtagaaaaa tcgacactaa aaacataaaa attaatttaa
     1081 gtgatattca atataaggtt gtagaacagg aggggaaatg atgggagagg aaattaaaat
     1141 agatcctcat tttttgaaaa aggtggagaa taatgtaaat agttacatta aggctcaaaa
     1201 agaagtttct attgcattac tagcagttag aaacaactta gcgagtaatt tttcaggtgt
     1261 tgcttgcaat gaaataaaaa attatataac agaattaatg aatgatttag aaaaagaatt
     1321 tggtgtcttc attacaaaga atcatgaaaa agttaaggcg ttagaggaaa gttataaaga
     1381 acttgatagt cagttaggac agacctttaa ttatggaatg gagagaacaa aatgagtaga
     1441 aaaatacatc taaaaacttt ttaaaagaaa gcggaataaa aacatggctg atttaaaggg
     1501 agtatagcaa atcctcaata aggagcaatt gtaaaggttt ttgatgcagt tggaggaaaa
     1561 caaatccagt ttgacacctc agtgagatga tatgagaaat tacacttgtt aagtgggata
     1621 aaataagtgt ctaaatctct aaaag
//
LOCUS       DASEAA010000290         1631 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.292, whole genome shotgun sequence.
ACCESSION   DASEAA010000290 DASEAA010000000
VERSION     DASEAA010000290.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1631)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1631)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1631
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.292"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..103
                     /locus_tag="U0342_002977"
     CDS             <1..103
                     /locus_tag="U0342_002977"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA mismatch repair protein MutT"
                     /protein_id="HEM2424296.1"
                     /translation="PYIIKHAPVFPARIEVSTKYHENTLLHINHQSL"
     gene            complement(141..386)
                     /locus_tag="U0342_002978"
     CDS             complement(141..386)
                     /locus_tag="U0342_002978"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464774.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424297.1"
                     /translation="MNKLLLITAAGYIVGVRSIEKENNQSILLNDVYINNPSQRLIDH
                     FESLEIAKEQVIGHKKLSTNDAQNLISRWEASYFTTS"
     gene            complement(383..1588)
                     /locus_tag="U0342_002979"
     CDS             complement(383..1588)
                     /locus_tag="U0342_002979"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464775.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MFS transporter"
                     /protein_id="HEM2424298.1"
                     /translation="MKEKLFNKGFVLITLINFVVYLVYYLLMVIIAVIAQEELNASLG
                     EAGFASGIYIIGTLLARLYMGKKLELFGRKRVLRFGILFFLVTTMAYLYMPTIAIMFI
                     IRFLNGFAYGTTSTATNAIVTAYIPNSRNGEGINYYGLSTSLAAAIGPFIGMILLSKT
                     SFYTIIIFSTVIVLLTALLCFYLPVKNIVLTTEHRKALQTWTVKSFIEYKVIPITFIA
                     FLMGISYSSVLTFLASYAREINLVSAGTFFFVVYALVITLTRPMSGKLFDAKGEKYVM
                     YPSYLFLAVGLVVLSTATSSLVLLISGGLIGLGYGTFMSNGQAVCLKVCEPHRIGIGL
                     STYFIGLDLGLGIGPYIMGEIHHVLSFQGIYIIAGAIAFICVFIYMFLSRKKVSSGAQ
                     EQLKGSEEV"
BASE COUNT          567 a          319 c          270 g          475 t
ORIGIN      
        1 accttatata atcaaacatg ctccagtgtt cccggctaga atagaagttt caacaaaata
       61 tcatgagaac acattattgc atattaatca tcaatcttta taaaaaaagc attgcgatta
      121 ttcgcaatgc ttccatacta tcatgatgtc gtgaaataac ttgcttccca gcgacttatt
      181 aaattttgag catcattagt ggataacttt ttatgaccga ttacttgctc tttggcaatt
      241 tcgagactct caaaatgatc aattaatcgt tgtgaaggat tattaatgta gacatcgttt
      301 agtagaatag attggttgtt ctccttttct atacttctaa ctcctacgat ataacccgct
      361 gctgtaatga gtaataattt attcatactt cttcactccc ttttagttgt tcctgtgcac
      421 cactagacac tttttttctg gataagaaca tatagatgaa tacgcaaata aatgcgatag
      481 caccggcaat aatgtaaata ccttggaatg aaagcacatg atgaatttca cccataatat
      541 aaggcccaat accaagtcct aaatcaagcc cgataaagta ggtagatagg ccaatcccaa
      601 tacggtgagg ttcacatact tttaaacaga cagcttggcc attcgacata aacgttccat
      661 aacctaagcc gatgagtccg cctgaaataa gtagcacgag acttgatgtt gctgtactaa
      721 ggaccactaa tccaactgct aaaaagagat aacttggata catcacatat ttttcgcctt
      781 ttgcatcgaa aagttttcca gacattgggc gagttagagt aataactaat gcatagacaa
      841 caaagaagaa cgttccagca ctcactaaat taatttctct agcataggaa gcaaggaatg
      901 taagcacact ggaataagaa atccccatta agaaggcaat aaatgttatt ggaataactt
      961 tatattcaat aaaacttttg acggtccaag tttgtaaggc cttccggtgt tcggttgtta
     1021 aaacaatatt tttcacgggt aaatagaagc aaagtagcgc agttaataag acaataaccg
     1081 tggagaaaat aataatcgta taaaagctcg ttttgctaag taaaatcatt ccgatgaacg
     1141 gtccaatcgc agctgcgaga cttgtgctga ggccataata attaatccct tctccgtttc
     1201 tagaattagg aatataagct gtgacaatcg cattggtagc agttgaagtt gttccgtatg
     1261 cgaatccatt taaaaaacga ataataaaca taatggcaat cgttggcatg tataagtaag
     1321 ccatcgtcgt tactaagaaa aataaaatcc caaatcttaa aacccgctta cgaccaaata
     1381 gttccagctt tttccccatg taaagtcgtg cgaggagcgt cccgataata taaatcccag
     1441 acgcaaatcc ggcttcacca agagacgcgt tcaactcttc ttgagcaata acggcaataa
     1501 taaccattag caaataataa acgagataaa cgacaaagtt aatcaatgtt attaagacaa
     1561 aacccttgtt aaataatttt tctttcatag aataaaatcc cttcctacct ataatttgta
     1621 atttatctca g
//
LOCUS       DASEAA010000291         1617 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.293, whole genome shotgun sequence.
ACCESSION   DASEAA010000291 DASEAA010000000
VERSION     DASEAA010000291.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1617
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.293"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1617
                     /locus_tag="U0342_002980"
     CDS             <1..>1617
                     /locus_tag="U0342_002980"
                     /inference="COORDINATES: protein
                     motif:HMM:NF037164.1,HMM:TIGR04226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="isopeptide-forming domain-containing fimbrial
                     protein"
                     /protein_id="HEM2424299.1"
                     /translation="LNLYEFAQYLEKKNENNVYTTTDTFVNEQADPYKANSKVWAGTN
                     KELDNYDQLGENGFSKGTISFQINDNPFTIRVGKDASQHKWGVWNSLSSANFNVNPQS
                     PTKSITDDDEVEVEKNELNVPYLNQEFTYNVKQVVGTLGVDLLEKYKSMIFTDVLPKE
                     VDFIGAELVDQDGKEIESSGKVDYNEKTNTVTFEASQDFLQKVVQYNGENYSLAIHVK
                     ANEHAKEDSSFKNTASVTINDKSKGTNEVETTTPVLPRLSKKILVGDKEEDRQDAKVN
                     DLVTFKVISDLGNSKNLKSVVIEDTLENVFTFQNITVKSNGQDITTEGDTKLENGIVS
                     WTAKDPKSLVGQTLESYIEVKLNDADNFSEFINAKTGKIEIPNVAKLIVNEEIFNSNK
                     VLVTPPTKENTTIFKQIKKSDGSNTDNILLKKGEAIMYDISYNFADKQFSELQLIDDL
                     EDVFQITEVNIQTANKDITDEGNLVIDKKSQKVIWTAKEPKRWSGKEIKVLISATLSK
                     DASLERYALEKNQYKIPNIAQAIVNDKVYKS"
BASE COUNT          635 a          214 c          297 g          471 t
ORIGIN      
        1 ttgaacctgt atgaatttgc acaatatctt gaaaagaaaa atgagaataa tgtctacact
       61 actactgata cctttgttaa tgaacaagct gatccatata aagcgaatag taaagtgtgg
      121 gcaggtacta ataaagagtt agacaattat gatcaattag gcgaaaatgg tttttcgaaa
      181 ggtactattt cattccaaat taatgataac ccatttacaa ttcgtgttgg gaaagatgca
      241 agtcaacata aatggggcgt ttggaattca ttgtctagtg caaactttaa tgtaaatcct
      301 cagagtccaa ctaaatctat tacagatgat gatgaagtcg aagtcgaaaa aaatgaacta
      361 aatgttccat atcttaatca agagtttact tacaatgtta aacaagtagt agggacacta
      421 ggtgttgatt tgttagaaaa atataaaagt atgatcttca cggacgtttt gccaaaagaa
      481 gtcgatttta ttggcgctga gttagtagat caagatggta aagaaataga atcctctggt
      541 aaagttgatt acaacgagaa aacaaacaca gttacctttg aagcatcaca agattttctg
      601 caaaaggttg tgcaatataa tggtgaaaat tactcgcttg ctattcatgt gaaagccaat
      661 gaacatgcta aagaagatag ttcgtttaaa aatacagcat cagttacgat taacgacaaa
      721 agtaaaggaa ctaacgaagt agagaccact actccagttt taccgcggtt gtcaaagaaa
      781 attttggttg gtgataaaga agaggatagg caagatgcta aagtaaatga tctagtaact
      841 tttaaagtga ttagtgattt aggcaatagt aaaaatctaa aatctgttgt tattgaagac
      901 actttagaaa acgtatttac attccaaaat attactgtaa agagtaacgg acaagatatc
      961 actactgaag gtgatacgaa attggaaaat ggaattgttt catggacagc aaaagatcca
     1021 aaaagtttag ttggacaaac gttagagtca tatattgaag tgaaattaaa tgatgctgac
     1081 aattttagtg aatttattaa tgccaaaact ggcaaaatcg aaataccaaa cgttgctaaa
     1141 cttattgtta atgaggaaat ttttaattcg aacaaagtat tagttactcc cccaacaaaa
     1201 gaaaatacaa ctatctttaa acaaattaag aagtcagatg gtagtaacac tgataatatt
     1261 ttgctgaaaa aaggtgaagc gattatgtac gatatttctt ataatttcgc cgataagcag
     1321 ttttcagagt tacaattaat agacgattta gaagatgtct ttcaaattac tgaagtaaat
     1381 attcaaacgg ccaataagga tattactgat gaaggtaatt tagtaattga caaaaaatct
     1441 caaaaagtga tatggacagc aaaagaacct aaacgttgga gtgggaaaga aattaaagta
     1501 ttgatttctg ctactctttc taaagatgcc tctttagaaa gatatgctct tgaaaaaaat
     1561 caatataaga ttcctaatat tgcacaagca atagtaaatg ataaggtgta taaatct
//
LOCUS       DASEAA010000292         1597 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.294, whole genome shotgun sequence.
ACCESSION   DASEAA010000292 DASEAA010000000
VERSION     DASEAA010000292.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1597)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1597)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1597
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.294"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            2..1525
                     /locus_tag="U0342_002981"
     CDS             2..1525
                     /locus_tag="U0342_002981"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731582.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LXG domain-containing protein"
                     /protein_id="HEM2424300.1"
                     /translation="MSRIDIGEIQAFLYQLRAANEPGRKTIQSIKAAVTKYVGDNSLK
                     GKAVDASKNYYQMTYFPLCDAIIEAMDESEERLGQYIQDFHAEVDSSPDAKIDADGLY
                     ELGKMIDRIESKKEALAQRMNSGTEGQMQNYRSQLAIAYKQENILEKYLSFEQSHASF
                     FDHLIDLVQAVQQTIRELQSNIQFNSQTGTYDLSKLNHATVSHMQQALNKARGIKEDI
                     IKELQDYTVLAVVYLDSNGKEQVMWLLERDGLGVENAELKAYLEKNGKYLNPEDYSII
                     TNEDLNKKINKAWRDGVYYLNGNKYDGLTGGILSTSAYVEAGKGFIDKSGLADVVLGL
                     GLSTAAIRGSVTFGKKNKLKGYDYLDDLLGDLNNKVKIKKYDSAESVNKYWHQQNYDQ
                     PPYTPKTPVQDLELLVETKFVRVYDGGSSKLHGGWLMKAEDIKGLTPTQIKDKFALPN
                     IPKFVGEVTLPKGSNIRMGEVNPLFENKGGGIQFDLKGQFIGEFKELGKISEWGGLK"
BASE COUNT          589 a          233 c          357 g          418 t
ORIGIN      
        1 agtgagtaga attgacatcg gagaaataca agctttttta taccagctac gtgcagccaa
       61 tgaaccagga aggaaaacta tccaatctat caaagcggcc gtgacaaagt atgtgggaga
      121 taatagttta aaaggaaaag cagttgatgc atcgaaaaat tattatcaaa tgacttattt
      181 ccctctctgt gatgcaataa tcgaagctat ggacgaaagt gaagaaagat tggggcagta
      241 catccaagat tttcatgccg aagttgatag ctcaccagat gccaaaatcg atgcggacgg
      301 tttatatgaa ctgggtaaaa tgattgaccg aatagaaagc aaaaaagaag ctttagcaca
      361 gcgaatgaac agtggaacag aagggcaaat gcagaattat cgttctcagt tagctattgc
      421 gtataaacag gaaaacattc tcgagaaata tttgtcattt gaacaaagcc acgctagctt
      481 ttttgaccat ttgattgact tagttcaagc agttcagcag accatccgcg aactccagtc
      541 gaatatccag ttcaacagcc agacaggcac ttacgatcta agtaagctga atcacgctac
      601 agtgagccac atgcaacaag ctttaaataa agcacgagga ataaaagaag atattataaa
      661 agaactacaa gactacacag tgcttgcagt ggtatattta gatagtaatg gaaaagaaca
      721 ggtgatgtgg ttattagagc gagacggctt aggagtggag aatgccgaac ttaaagccta
      781 tttagaaaaa aacggaaaat atcttaatcc agaagattat tcgattatta ctaatgaaga
      841 cttgaataag aaaatcaata aagcttggcg agatggtgtt tattatctaa atggtaacaa
      901 gtatgatgga ctaactggcg gtattttatc tacctcggca tatgttgaag ctgggaaagg
      961 gtttatagat aagagtgggt tagcggatgt tgtgctgggg cttgggttga gtacggctgc
     1021 gattagaggg agtgtgacat ttggtaagaa aaataaactg aagggttatg attatttaga
     1081 tgacctgttg ggcgatttaa ataataaagt gaaaataaag aagtatgact ctgctgaaag
     1141 tgtcaataaa tattggcatc aacaaaacta tgatcaacct ccatatacac ctaaaacacc
     1201 tgtccaagat ttagaacttt tggtagaaac taaatttgtc agggtatatg atgggggaag
     1261 ttcaaaacta catggtggat ggcttatgaa agcagaggat ataaaaggtt taacaccgac
     1321 tcaaattaaa gataaatttg cattacctaa tatacccaaa tttgttggag aagttacttt
     1381 gccaaaaggc agcaatatca gaatgggaga agtaaatcct cttttcgaaa ataaaggtgg
     1441 gggtatacaa tttgatttga aaggtcaatt cattggtgaa tttaaagaac tcggaaaaat
     1501 ctcagaatgg ggcggattaa agtgacaatt aacgcagaat acattgataa taaattaact
     1561 gcttttggaa aaagcattga atttaagaat aaaattg
//
LOCUS       DASEAA010000293         1580 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.295, whole genome shotgun sequence.
ACCESSION   DASEAA010000293 DASEAA010000000
VERSION     DASEAA010000293.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.295"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            82..1089
                     /locus_tag="U0342_002982"
     CDS             82..1089
                     /locus_tag="U0342_002982"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465671.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YeiH family putative sulfate export transporter"
                     /protein_id="HEM2424301.1"
                     /translation="MSQILFKTKTFWYGIALTFCIATLSYFLAKLPFLMILGQLVTAI
                     LIGIIIRALFPVPEKWFTGIQFSNKVILRAGIILLGFRLNLVDIYHAGWRVFLIAALC
                     LSFGITIVYFLAKLFGVDKKLAILVACGTGICGAAAVVAISPQVKADNNQTAVAATII
                     ALLGTIFTVIYTLIYPILPLGPDGYGIFAGATLHEIAHVIAAADPGGSSAVDMAVIVK
                     LTRVALLVPVCFVVAKMVNAGTKNRFSWAELPVPWFIFGFLATSAINSFGIIPTSVTD
                     FLVICAYFLIAMSMGGLGLNVHLPSFGKMGGKPFAAALIGSVFLSAFGLALVLLFHLA
                     G"
     gene            1145..>1580
                     /locus_tag="U0342_002983"
     CDS             1145..>1580
                     /locus_tag="U0342_002983"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HEM2424302.1"
                     /translation="MTKAIWTCRAFLLGYFLVLHFTADTYTFLILNVGLAYIPFEIAV
                     FLTKKPRVWWIFWPLGIVWLVFFPNAPYLLTDLLHLQRLEIYGAEGILSTAPWLWRHF
                     TYIIVGVFFGLFIGFWSFAKMLAEIRRRFNWTSLLSYQLLLIG"
BASE COUNT          399 a          280 c          308 g          593 t
ORIGIN      
        1 tatcaataat ataattaata taaattttac taataaaatc aagaatggta aagtaaaagt
       61 ataaaagaaa gggggatgaa catgagtcaa attttattta aaacgaagac tttttggtat
      121 ggtattgcgc ttactttctg tattgctacc ttatcttatt ttttagcgaa gttgcctttt
      181 ttaatgattc tcggacaact tgtaactgct attttaattg gtattatcat tcgtgcactt
      241 ttcccagttc ctgaaaaatg gtttactggt attcagtttt ccaacaaggt aattcttcgt
      301 gctgggatta ttttacttgg ttttcgcttg aacttagttg atatttatca tgctggctgg
      361 cgcgtgtttc tcattgctgc cttatgcctt agctttggta ttactattgt ttatttctta
      421 gccaaacttt ttggagtgga taaaaaacta gctattttgg tcgcttgtgg tacagggatt
      481 tgtggtgctg ctgcagtagt tgcaatttct ccacaagtaa aagctgataa taaccaaacg
      541 gctgtggctg ctacaattat tgcattactt ggaactattt tcactgttat ctatacgttg
      601 atttatccaa ttctgccact tggaccagac ggttatggga tttttgcagg ggctacactt
      661 catgaaattg cccacgttat tgcagctgca gatccaggcg gctcatcagc tgttgatatg
      721 gcggttattg ttaaattaac acgtgtagcc ttacttgttc cagtctgctt tgttgttgca
      781 aaaatggtta atgctggaac taaaaaccgt ttttcttggg ctgaacttcc tgtaccttgg
      841 tttattttcg gctttttagc aactagtgca attaacagct ttggaattat tccaacatct
      901 gtaactgatt ttcttgtcat ctgcgcatat ttcctcattg ctatgtcaat gggcggactc
      961 ggtttaaatg tccacttgcc atcgttcgga aaaatgggtg gaaaaccttt tgctgcggcg
     1021 ttaatcggtt ctgttttcct ttccgcattt ggtctagctt tagtactttt gtttcattta
     1081 gcaggttaag atgtcctcgt cacctcgatt tgtgatacaa tagcaaacac gaggtgacta
     1141 tttcatgacg aaagcaattt ggacttgccg agcgttctta ctcggatact ttcttgtgct
     1201 gcatttcact gcagatactt acacttttct aattttaaat gtcgggcttg cttatatacc
     1261 tttcgaaata gcagtatttc tcacaaaaaa acctcgcgtc tggtggattt tttggccact
     1321 aggtattgtt tggctagtat ttttcccaaa tgcaccgtat cttttaactg atttacttca
     1381 tttacaacgt ttagaaatat acggggcaga aggaatactt tcaacagcac cttggttatg
     1441 gcgacatttc acttatatta tcgtcggtgt gttctttgga ttatttattg gattctggtc
     1501 tttcgcaaaa atgcttgcag aaataagaag acgatttaat tggactagtt tactaagtta
     1561 tcaattactt ttgataggat
//
LOCUS       DASEAA010000294         1580 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.296, whole genome shotgun sequence.
ACCESSION   DASEAA010000294 DASEAA010000000
VERSION     DASEAA010000294.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1580
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.296"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1166
                     /locus_tag="U0342_002984"
     CDS             <1..1166
                     /locus_tag="U0342_002984"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="NAD(P)-dependent oxidoreductase"
                     /protein_id="HEM2424303.1"
                     /translation="GMISQIAAIPGMSIVGISDIHVEAAQKAADAYNATATKKEKILL
                     SNDFKEIIHSDLVEVIVDATGVPEVGAKISLETLLAKKQLVLLNVEIDITIGPLMKKL
                     YDSAGLVYTGSDGDEPAAITELYEFSKSMGMEVLVAGKGKNNKLKISANPDSCQAEAD
                     GKNMASHMLAAFQDGTKTMAEMNLLSNAIGYVPDVVGMHGISGDVDSVIKDLDLKDQG
                     GILNKFGVVEYVDGLAPGVFVIVKGQNEGVSHELSYLMKKGDRDHHILYRPYHLASLE
                     TPLTIAKAVLNHDHAIVPMGAPVSETVAVAKKDIAAGEKLDGIGGFCVRGVLETHVDM
                     ATNGHIPIGLISGEVVARRNIKAGTFITDEDVSLDESTTVWKLRKLQDETFNK"
     gene            1221..>1580
                     /locus_tag="U0342_002985"
     CDS             1221..>1580
                     /locus_tag="U0342_002985"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464073.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transcriptional regulator GutM"
                     /protein_id="HEM2424304.1"
                     /translation="MNIVLIASLIFIAQTGLAFFQVRYYQHHMNKVADKYAGKTGYYL
                     YSEMERLKFRTSAVAILVVNENRVVHECQILTGKTVFAKFKTFTNYHHKDLSEILTDL
                     SSKNKNTIQEKAIIKTVN"
BASE COUNT          509 a          296 c          325 g          450 t
ORIGIN      
        1 tcggtatgat ttcgcaaatc gccgctattc caggtatgag tatcgttggt attagcgata
       61 ttcatgtaga agcagcacaa aaagccgcag atgcttacaa tgccacagca accaaaaaag
      121 aaaaaattct attatctaat gactttaaag aaattattca ttctgatctt gtagaagtga
      181 ttgttgatgc tactggtgtt ccagaagtcg gcgcaaaaat ttccctagaa actttacttg
      241 ctaaaaaaca actcgtttta cttaatgtag aaattgatat tactatcgga ccactaatga
      301 aaaaactata tgacagcgct ggtctcgtat atactggctc tgatggcgac gaaccggctg
      361 cgataactga actttacgaa ttttccaaat ctatgggtat ggaagtcctt gtcgctggta
      421 aagggaaaaa taataaactt aaaatcagcg ctaaccctga tagctgtcaa gcggaagccg
      481 atgggaaaaa tatggcgtct cacatgctag ctgctttcca agatggaaca aaaacaatgg
      541 cagaaatgaa tttactttct aatgctatcg gttatgtccc agacgttgtt ggaatgcatg
      601 gtatttcagg tgacgttgat tcggtcatca aagatctaga cttaaaagac caaggtggta
      661 ttttaaacaa atttggcgtt gtagaatatg tagacggttt ggctcctggc gtattcgtta
      721 tcgtcaaagg gcaaaacgaa ggcgttagtc acgaacttag ctacctcatg aaaaaaggcg
      781 accgggatca tcacattctt tatcgtcctt atcatctagc tagccttgaa acacctctaa
      841 ccattgcaaa agctgtgttg aaccacgatc acgctattgt tccaatgggc gcaccagttt
      901 ctgaaacggt tgcggttgct aaaaaagaca tagctgccgg tgaaaaatta gatggcattg
      961 gcggtttctg tgtacgcggt gtactggaaa ctcacgtcga tatggcaacg aatggtcata
     1021 ttcctatcgg cttgattagc ggtgaggtag tagcccgcag aaatatcaaa gctggcacat
     1081 ttattactga cgaagacgtt tcattagatg aatccactac tgtttggaaa cttagaaaac
     1141 tgcaagatga aacatttaat aaataatttc aacttggtgg gaagtgattt gtcttcccac
     1201 cctctaagga ggaaaagtaa atgaatattg tccttattgc ttccctcatt ttcatcgctc
     1261 agacaggtct tgcttttttc caagtgaggt attatcagca tcatatgaac aaagttgcgg
     1321 ataaatatgc tgggaaaact ggttattatc tttattccga aatggaacga ctcaaatttc
     1381 gcacaagtgc tgtagccatt ctggtagtga atgaaaaccg agttgtacat gaatgccaaa
     1441 ttttaaccgg aaagactgtt tttgcaaagt tcaagacttt caccaactat catcataaag
     1501 atttatccga aatattgacg gatcttagta gtaaaaataa gaatacaatc caagaaaaag
     1561 caattattaa aacagtcaac
//
LOCUS       DASEAA010000295         1572 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.297, whole genome shotgun sequence.
ACCESSION   DASEAA010000295 DASEAA010000000
VERSION     DASEAA010000295.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1572)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1572)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1572
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.297"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..1002)
                     /locus_tag="U0342_002986"
     CDS             complement(<1..1002)
                     /locus_tag="U0342_002986"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463842.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424305.1"
                     /translation="MSEIQHFSEFIDGATNYWYENKFDRCNACDMVNVMLTVFDGDIS
                     TPGNQSNKIPRRISVSAKVYDVDRWNQSREELIELLNWVSGDLFEMSFEKNEELFDAF
                     PLELPSPRKECITLFSGGLDSFAGSYYNFLNNISSDYVGYVNKAEERTYQKRLQSFYR
                     KIFSAGGSEVDIRNKYQKPKIFYFQSTRSLLYLSLAISKAISNSVKEIRMYENGILSL
                     NPEFGRYTTKTTHPKTIFLYNKLLDTLGYDIRIVNKFEYETKGEIVENMNLEFKSQIK
                     NTFTCGKSRVGKEYNHTGQCGACIPCILRKISLAAYDNEHFDAKYFVGYKNVASASEK
                     "
     gene            complement(1002..>1572)
                     /locus_tag="U0342_002987"
     CDS             complement(1002..>1572)
                     /locus_tag="U0342_002987"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463841.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424306.1"
                     /translation="GKNIEEAKLHLPEITSTIKTGFIEKEISEQVYQSIIGVVSGKLS
                     KIYDLDEDKCKEITSDFIKREQWINEIMELVEQDNVTGISDVLLKALKIALGETVKAE
                     QNETYFVEKLLYEIIFLSLENTMQGALETLEEGITIPQIRKEFIKPLADKLFEEDIKT
                     EIPALVLGKTTLAVINNKIADKLKNFGGF"
BASE COUNT          484 a          295 c          199 g          594 t
ORIGIN      
        1 tttttctgac gcagaagcta cgtttttata acccacaaaa tatttagcgt caaaatgctc
       61 attatcatat gctgccaaag atattttcct taatatacat ggaatacacg caccacattg
      121 tcctgtgtgg ttatactctt ttccgaccct actttttcca catgtaaaag tattttttat
      181 ttgtgattta aattccagat tcatattttc aacaatttca cctttcgttt cgtattcaaa
      241 tttatttact attcgaatat catatccaag agtatctaaa agtttattgt agagaaaaat
      301 tgtcttagga tgtgtagttt ttgttgtgta tctgccaaat tcagggttta aagatagtat
      361 accattttca tacattctaa tttctttgac agaattagaa atagcttttg atattgctag
      421 ggataaatat agtaaagatc tagttgattg aaagtagaaa attttaggct tttgatattt
      481 attcctgata tcaacctcac taccacctgc agaaaaaatc tttctataaa aagactgtaa
      541 gcgcttttgg tatgttcttt cctcggcttt attaacatat cctacataat cacttgaaat
      601 attatttaag aagttgtaat aggagcctgc aaaagaatct aatccacctg aaaatagtgt
      661 gatacactct tttcgaggac ttgggagttc taatggaaag gcgtcaaata gttcttcatt
      721 tttctcaaaa gacatctcaa ataggtctcc tgatacccaa ttaagtaatt ctattaattc
      781 ctctctagat tgattccaac gatccacatc atatactttt gcagatacag atatcctccg
      841 aggaatttta ttactttggt tacctggtgt agaaatatct ccatcgaaca ctgttaacat
      901 aacgttaacc atatcacatg cattacagcg atcaaattta ttctcatacc aataatttgt
      961 agccccatct ataaactctg aaaaatgttg gatttcactc attaaaagcc accaaaattt
     1021 tttaacttat cagcgatttt attatttatt acagctaaag ttgttttacc taatactaaa
     1081 gctggaattt ctgtctttat atcttcctca aatagcttat cagcaagagg ttttataaac
     1141 tcttttcgaa tttgtggaat agttatccct tcctccaaag tttccaaagc tccttgcata
     1201 gtgttttcta aagataaaaa aatgatttca tacaatagtt tctctacaaa gtaagtttca
     1261 ttttgttcag ctttaacagt ttctcctagc gctattttta aggccttcaa caaaacatct
     1321 gatattccag ttacattatc ctgttcaacc aactccatta tctcatttat ccattgttct
     1381 cttttaataa aatcacttgt aatctcttta cacttatctt catctaggtc ataaatcttt
     1441 gaaagcttcc cgcttacaac acctataata ctttgataga cttgttccga aatttctttt
     1501 tcaataaaac cagtttttat tgtgcttgtt atttccggca agtgtagttt agcttcttca
     1561 atattctttc ct
//
LOCUS       DASEAA010000296         1545 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.298, whole genome shotgun sequence.
ACCESSION   DASEAA010000296 DASEAA010000000
VERSION     DASEAA010000296.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1545
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.298"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            190..789
                     /locus_tag="U0342_002988"
     CDS             190..789
                     /locus_tag="U0342_002988"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014952531.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424307.1"
                     /translation="MLVIVAASVGYYFIKENERKTPQTIDYKTVETKRTDLSVYVSAE
                     GHIVKKENEWPDYEDFAVKIMVDELEINQIKEKQTADVYVEAVNNKVYKGKVVDINEK
                     GIINGSVTSYAVTIDLEDETKVKENMSVSADVLVALEKKILTIPIEAVNTDKADKHYV
                     YTVDANKQKKKIWIEVGKHNTKSIQVVKGLTEKQLVIIP"
     gene            807..1481
                     /locus_tag="U0342_002989"
     CDS             807..1481
                     /locus_tag="U0342_002989"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003770363.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein"
                     /protein_id="HEM2424308.1"
                     /translation="MIQLFNISKSYQMGECTIKALDNVSLQIDQGEFLAIIGPSGSGK
                     STLMNILGILDRATIGEYYLNKTNLMRISDKKISRIRNRKIGFIFQQFNLMPRLTAFE
                     NVELPLVYRGVGKATRKKVVLKSLERVGLLDKEKHIPAQLSGGQQQRIAIARAIAGSP
                     ELILADEPTGALDSKTGEEVMTLLREIHREGNTLIMITHDKEIANQAERIIEIKDGKL
                     REWNKL"
BASE COUNT          613 a          213 c          302 g          417 t
ORIGIN      
        1 agtaagacta attattgttt cggcaagtga tcgaattgcg gaagaattag ctaatataat
       61 tgaaatttta aaatcatgga attacgggga actaaaaaaa tgttttcaac acataatgaa
      121 cgcaatgatt ttgattgctt tttaaagaga ggtttttaaa tattgaaaaa aataagctgg
      181 gtgattatca tgctggttat cgttgctgca tcggttggct attattttat aaaagaaaat
      241 gagcgaaaga cgccacaaac aattgattac aaaacagttg aaacaaaaag aacagattta
      301 agtgtatatg tttccgcaga aggtcacatt gtaaaaaaag aaaatgaatg gccagattat
      361 gaagattttg ctgtcaaaat tatggtagat gagctagaaa ttaaccaaat aaaagaaaaa
      421 cagacagctg atgtgtatgt cgaagcagta aataataaag tatacaaagg aaaagttgta
      481 gatataaatg agaagggcat tataaacggg tcagtaactt cttatgccgt gacgattgat
      541 ttagaggatg agacgaaagt aaaagaaaat atgtctgtaa gtgctgatgt acttgtggct
      601 ctagaaaaaa agattttaac aattccaata gaagctgtta atacggataa agctgataaa
      661 cattatgtct atacagttga tgcaaataaa caaaagaaga aaatttggat tgaagtaggc
      721 aaacataata cgaaatctat tcaagtagta aaaggtctta cagagaaaca acttgtgatt
      781 attccataga cggaggtgag caagacttga tacaactatt taatatttcc aaatcctatc
      841 aaatgggtga atgcaccata aaggctctag ataatgtatc attgcaaatt gatcaagggg
      901 aatttctggc cattatcgga ccgtctggct ctggaaaatc tactttaatg aacatcctcg
      961 gtatacttga cagagcaacg ataggagaat actacctcaa taaaacgaat ttaatgcgaa
     1021 tatcagataa gaaaatttct cgaataagga ataggaaaat tggttttatt tttcaacaat
     1081 ttaatttaat gccacgactt actgcttttg aaaatgtaga attgccatta gtatatcgag
     1141 gtgtgggcaa agctactcga aaaaaagtag tattaaaaag tttagaacgt gtcggactat
     1201 tagataaaga aaaacatata ccagcccagc tttcaggagg acagcagcaa cggattgcaa
     1261 tagctcgagc catcgctgga agtccagaat taatattagc agatgaacct actggcgcgc
     1321 tagactctaa aactggagaa gaagtaatga ctttgctaag agaaattcat agagaaggaa
     1381 atacattaat catgattacc cacgacaaag aaattgcaaa tcaagcagaa cgaataatag
     1441 aaataaaaga cggaaaactc cgtgaatgga acaaattatg actcttttac agagtataaa
     1501 gttagcgcta aaacaattat tgtccaccaa atttcgaaca ttttt
//
LOCUS       DASEAA010000297         1528 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.299, whole genome shotgun sequence.
ACCESSION   DASEAA010000297 DASEAA010000000
VERSION     DASEAA010000297.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1528)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1528)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1528
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.299"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1355
                     /locus_tag="U0342_002990"
     rRNA            <1..1355
                     /locus_tag="U0342_002990"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
     gene            1433..>1528
                     /gene="rrf"
                     /locus_tag="U0342_002991"
     rRNA            1433..>1528
                     /gene="rrf"
                     /locus_tag="U0342_002991"
                     /product="5S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00001"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF00001"
BASE COUNT          401 a          352 c          457 g          318 t
ORIGIN      
        1 gaaggaaatt aagtacggaa gttcctgatt tcacgctgtc aagaaaagcc tctaggaaga
       61 gtagtactgc ccgtaccgca aaccgacaca ggtagatgag gagagaatcc taaggtgagc
      121 gagagaactc tcgttaagga actcggcaaa atgaccccgt aacttcggga gaaggggtgc
      181 tctattaggg tgcaagcccg agagagccgc agtgaatagg cccaggcgac tgtttagcaa
      241 aaacacaggt ctctgcaaaa ccgtaaggtg acgtataggg gctgacgcct gcccggtgct
      301 ggaaggttaa gaggagtgct tagcttcggc gaaggtacga attgaagccc cagtaaacgg
      361 cggccgtaac tataacggtc ctaaggtagc gaaattcctt gtcgggtaag ttccgacccg
      421 cacgaaaggc gcaacgatct gggcactgtc tcaacgagag actcggtgaa attatagtac
      481 ctgtgaagat gcaggttacc cgcgacagga cggaaagacc ccgtggagct ttactgcaac
      541 ctgatatgga atgtttgtac cgcttgtaca ggataggtag gagccgaaga gacgtgtgcg
      601 ctagcatacg aggaggcaat ggtgggatac taccctggct gtatgaccat tctaacccgc
      661 cacgcttagc gcgtggggag acagtgtcag gtgggcagtt tgactggggc ggtcgcctcc
      721 taaagagtaa cggaggcgcc caaaggttcc ctcagaatgg atggaaatca ttcgcagagt
      781 gtaaaggcac aagggagctt gactgcgaga ctgacaagtc gagcagggac gaaagtcggg
      841 cttagtgatc cggtggttcc gcatggaagg gccatcgctc aacggataaa agctaccccg
      901 gggataacag gcttatctcc cccaagagtc cacatcgacg gggaggtttg gcacctcgat
      961 gtcggctcgt cgcatcctgg ggctgtagtc ggtcccaagg gttgggctgt tcgcccatta
     1021 aagcggcacg cgagctgggt tcagaacgtc gtgagacagt tcggtcccta tccgtcgcgg
     1081 gcgcaggaaa tttgagagga gctgtcctta gtacgagagg accgggatgg acacaccgct
     1141 ggtgtaccag ttgttccgcc aggagcatcg ctgggtagct atgtgtggca gggataaacg
     1201 ctgaaagcat ctaagcgtga agcccccctc aagatgagat ttcccatttc ttcggaaagt
     1261 aagatccctg aaagatgatc aggtagatag gtttggagtg gaagtgtagc gatacatgga
     1321 gcggacaaat actaatcgat cgaggactta accaaaaaat gaaacgaagt tacctaactg
     1381 aaccctttct tctctagttt tgagagagca atctttcaac aactttatat tgtctggtag
     1441 ttatggcgag aaggtcacac ccgttcccat cccgaacacg gtagttaagc ttctctgcgc
     1501 caatggtagt tgggggcttc cccctgcg
//
LOCUS       DASEAA010000298         1525 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.300, whole genome shotgun sequence.
ACCESSION   DASEAA010000298 DASEAA010000000
VERSION     DASEAA010000298.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1525)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1525)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1525
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.300"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            87..1433
                     /locus_tag="U0342_002992"
     CDS             87..1433
                     /locus_tag="U0342_002992"
                     /inference="COORDINATES: protein motif:HMM:NF037847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424309.1"
                     /translation="MTRPGIILSSSFVSSTDEKFNKYIEYLDRDEATRNKAFEKYNIV
                     SYTEFNDYMENPEKSTGLFTATDDYVDEEMVNKMKNLFAEAQKNQSTLWQDVFSFDNE
                     FLIEEGLLDKHTGNLDEKKIQQAIRVAMEDKFVKEDLTGQGVWTASIHYNTDNIHVHV
                     ASVEMENTKERVFREVKTFNKNTQSYEGTGKFDWQSKGRIKQKTLDSMKSKFANTLID
                     RNVSLAKIHELSRTHLIKNTVNLSLEDQNLCRMYNDLLRTLPDNKKLWQYNRKEMEPF
                     RDQVNKITSYYLKEKNPETYNELVATLDAEEKKQIRIYSVNSKAIINDPGAPVQHAKN
                     SEITNNYKDNKLKELYERAGNKILQELKSMTIEERKELYKSSKLKKRHIKNREDTTWK
                     PSSVFKKQLFNEKLVLKNMKKFEKIITNERSSMLDEQQYEQLQQDIIRSQFNSRGR"
BASE COUNT          658 a          184 c          250 g          433 t
ORIGIN      
        1 atgtataatc tgtttagaga tagagttatt aactatagaa agaaaagaaa ggaaagtctt
       61 tatatgtaaa agaaaggaat taaattatga cacgtcctgg aatcatctta tcaagtagct
      121 ttgtttcaag tactgatgaa aaatttaata aatatatcga gtatttagat agagatgaag
      181 caacgcgtaa taaagctttt gaaaaatata acattgtttc ctatacagaa ttcaatgatt
      241 atatggaaaa tccagaaaaa agtacgggtt tatttaccgc aactgatgat tatgtagatg
      301 aagaaatggt aaataagatg aaaaatttat ttgcagaagc acaaaaaaat caaagcacat
      361 tatggcaaga tgttttctcc tttgataatg agtttttaat agaggaaggt cttttggaca
      421 aacatacagg taatcttgat gaaaagaaaa ttcaacaagc tatacgtgta gcgatggagg
      481 ataaatttgt taaagaagat ttaactggac agggtgtttg gacagcatct attcattaca
      541 atacagataa tattcatgta catgtagctt cagttgaaat ggaaaacaca aaagaacgag
      601 tttttaggga agtcaaaact tttaataaaa atactcaaag ttatgaaggg acaggtaagt
      661 ttgattggca aagcaaaggt cgcattaaac aaaaaacttt agatagtatg aaatcaaagt
      721 ttgctaatac tttaattgat cgtaatgtat ccttagcaaa aattcatgaa ctttcacgaa
      781 cacatcttat aaaaaataca gtcaacttat ctttagaaga ccaaaatctt tgcaggatgt
      841 ataatgattt gttaagaact ttaccagata acaaaaaact atggcagtat aatagaaaag
      901 aaatggaacc ttttcgtgac caagtaaata aaattacatc atattattta aaagaaaaaa
      961 atcctgaaac atataatgaa ttagttgcaa ctctcgatgc tgaagaaaaa aaacaaattc
     1021 gaatttatag tgttaatagt aaagctatta ttaatgatcc aggtgctccc gttcaacatg
     1081 ctaaaaactc agaaattacg aataattata aagacaataa actaaaggaa ctatatgaac
     1141 gggctggcaa taaaatactg caagaattaa aatcaatgac aatagaagaa cgaaaagaac
     1201 tatacaaaag ttcgaaattg aaaaagagac atattaaaaa tagagaagat acaacatgga
     1261 aaccttcttc tgtttttaaa aaacaattat ttaatgaaaa attagtttta aagaatatga
     1321 aaaaattcga aaaaattatt acgaacgaaa ggagcagtat gctagatgaa cagcaatacg
     1381 aacagctaca acaagatata attagaagtc aatttaattc gagaggaaga tagaatgaca
     1441 acattaaaac gattcaactt tgttcaaacg attgctttag gctttgtatt acaattaact
     1501 atacagatta tctttataac ggtaa
//
LOCUS       DASEAA010000299         1518 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.301, whole genome shotgun sequence.
ACCESSION   DASEAA010000299 DASEAA010000000
VERSION     DASEAA010000299.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.301"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            134..736
                     /locus_tag="U0342_002993"
     CDS             134..736
                     /locus_tag="U0342_002993"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465009.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-hairpin-helix domain-containing protein"
                     /protein_id="HEM2424310.1"
                     /translation="MMDLVKKHKNYILIGIAILCAGLVYIWIPDSKSDAVTANQAVTK
                     EEKPKKEETKLSNEVYIDIKGAVRTPGVYKLPMDARVQDVVKIAGGLTAEADCSKLNL
                     AEKLKDEMSIYVYKKGEEGPATQGANTEEASTGSAKINLNSATKDDLQQVPGIGESKA
                     TAIIEYREKEGLFQTIEDLKNVSGIGEKTVEKLKEYLDVN"
     gene            808..1368
                     /locus_tag="U0342_002994"
     CDS             808..1368
                     /locus_tag="U0342_002994"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465008.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ComE operon protein 2"
                     /protein_id="HEM2424311.1"
                     /translation="MQRIAWDQFFMAQSHLISSRSTCTRLMVGATIVRDKRIIAGGYN
                     GSIAGGDHCAEHGCYVVDGHCIRTIHAEMNAILQCAKFGATTDKAELYVTHFPCLACT
                     KSIIQAGIKKVYFAKDYKNHPYALELFNIAGVELQKVEFDESVLQVNNWNGEKMHTLV
                     KEAAVEVNIEPEKAEQLYQNISEKLN"
     gene            1403..>1518
                     /locus_tag="U0342_002995"
     CDS             1403..>1518
                     /locus_tag="U0342_002995"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465007.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="competence protein ComE"
                     /protein_id="HEM2424312.1"
                     /translation="MIVLAIVCANFTSSIVPICICLLGLIAFIKKSKIILLFV"
BASE COUNT          543 a          229 c          315 g          431 t
ORIGIN      
        1 cgaaagaatc tttttcgcag caagaaagta atttttcatt attactttct ttttttgtgc
       61 gattttcacc ttaaactatc aaaaaggaat ttgtcctagc atggcgaata gtatattaag
      121 gacggtgata tggatgatgg acttagtaaa aaaacacaaa aattatatct taatagggat
      181 tgctattctt tgtgctggtt tagtttatat ttggatacca gatagtaaat ctgatgctgt
      241 aactgccaat caagcagtaa cgaaagaaga aaaaccgaag aaagaagaaa caaaattatc
      301 aaatgaagtt tatattgaca ttaaaggagc agtaaggacc cctggtgtct ataaactgcc
      361 aatggacgct agagttcaag atgtggtgaa aattgcagga gggctcacag ctgaagccga
      421 ttgcagtaaa ttgaatttag ctgaaaaact aaaagacgag atgagtatct acgtttataa
      481 aaagggagaa gaaggtcccg caacacaagg agctaacaca gaagaagcaa gtaccggttc
      541 tgcgaaaatt aaccttaaca gtgcaacgaa ggacgattta caacaagtcc cagggattgg
      601 agaatcgaag gcaacagcga taatagagta ccgagaaaaa gaaggcttat tccaaacaat
      661 agaagattta aaaaatgttt caggcatcgg cgaaaaaaca gtagagaaat taaaagaata
      721 tttggatgtt aattaataaa agtggttgac gaacttcctt ctaaacacct atactaatat
      781 ttatcaaatc ataagggagt ttttaatgtg cagagaatcg catgggatca gttttttatg
      841 gcgcaaagtc atctaatatc atctaggagc acgtgtacac gactaatggt cggtgcgaca
      901 atagttcgag ataaacgtat tattgcgggc ggatataatg ggtccatcgc tggtggcgat
      961 cattgtgcag aacacggctg ttatgttgta gacggtcact gcattcgaac aatacatgca
     1021 gagatgaacg cgattttaca atgtgctaaa tttggtgcaa cgacagataa agctgaatta
     1081 tatgtaacgc atttcccttg tcttgcttgt acgaaatcta ttattcaagc aggtataaag
     1141 aaagtgtatt tcgctaaaga ctacaaaaac catccgtacg ctttagaatt atttaacatt
     1201 gctggcgtcg aattacaaaa agtagaattt gatgaatctg ttcttcaagt aaacaattgg
     1261 aatggagaaa aaatgcatac tttagtaaaa gaagctgcag tggaagtaaa tatcgaacca
     1321 gaaaaagcag agcaacttta tcaaaacatc tcagagaaat tgaactaaat agggagggga
     1381 cgttatcgag cgatatttag ctattattgt tttagctatt gtttgtgcga attttacaag
     1441 ctctatcgtt cccatatgta tttgtttgct aggtttaatt gcttttatta aaaaatccaa
     1501 aattattctt ctttttgt
//
LOCUS       DASEAA010000300         1518 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.302, whole genome shotgun sequence.
ACCESSION   DASEAA010000300 DASEAA010000000
VERSION     DASEAA010000300.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1518)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1518)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1518
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.302"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..>1518)
                     /gene="virA"
                     /locus_tag="U0342_002996"
     CDS             complement(<1..>1518)
                     /gene="virA"
                     /locus_tag="U0342_002996"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465271.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter permease VirA"
                     /protein_id="HEM2424313.1"
                     /translation="LVFFTFVSLSYNPLIDTVFKRWELFGPAMFSSASLMLILFIIFF
                     IFYSNGFFLKRRKREIGLYSLLGLRKSQIVLVLFFENAMLYMLATIFGVLIGIFSSKL
                     FAMVLFWIVGLAIDAEFIISFKAIIDTILVFFGIMLFTSVYAVFLVLRYNLNQLFKND
                     DKEEKVAKGSLIFMLIGLALITFGYYLATRNIEESPIWLAYDFFDLILVILACVILGT
                     WLMVRFGTPYVIRQLYNNKRFFYKGTNMLGITSLRFRLKKNAGTIAMIAVLSATTLTI
                     IGSMSSFYVRTINDISAENPSSYQVLNISAKNEKEIIQTIRDDQDHKLKKLMQAEMLS
                     AEVEYKDIPKYKMHMDTFIHTIVSESEYNRIGERQQSDFVESKKIAYGDAILLGKNTY
                     YARSDIQEKWLTRKMVVQSNKSVAKKMPPIKVVDFRENSIFNTGISYETLVVSDEYYD
                     DLERLFPPESVTMFDITNPNHSESLDKKVQTIVDGEPSLFSENVSSYYTNYHLIS"
BASE COUNT          548 a          283 c          223 g          464 t
ORIGIN      
        1 tggagattaa gtggtaattc gtataataag aagaaacatt ttccgagaat aatgaaggct
       61 ccccgtcaac gattgtttgc actttcttat ccaagctttc actatgattc ggattagtaa
      121 tatcaaacat tgtcacagat tcaggaggga aaagtcgctc caaatcatca taatattcat
      181 cggaaacaac cagcgtttca taagaaatcc ctgtattgaa aattgaattt tctcgaaaat
      241 ccactacttt tattggtggc attttctttg caactgattt atttgattgg acgaccattt
      301 tacgagtaag ccatttttct tgaatgtccg atcttgcgta ataagtattt tttccaagta
      361 agattgcatc accataggca atttttttag attcgacaaa atcactctgc tgcctttcac
      421 cgatacgatt atattctgat tccgatacaa tggtatgaat gaatgtatcc atatgcattt
      481 tatatttagg aatatcttta tattccactt cagcactaag catctctgct tgcatcaatt
      541 ttttcaattt atgatcttga tcatcgcgaa tcgtttgaat aatctctttt tcatttttag
      601 cagaaatatt gagcacttga taactggaag gattctccgc tgaaatatca ttaattgtac
      661 gcacataaaa actactcatg gagccgataa tcgttaacgt tgtcgcacta agaacagcaa
      721 tcatcgcaat cgtaccagca tttttcttta gcctaaaacg aagcgatgta atccctagca
      781 tattcgtccc tttataaaag aaacgtttat tattgtatag ttgtcgaatg acataagggg
      841 tgccaaatct aaccatcagc caggttccta aaataacgca agccagtatc actaaaatta
      901 aatcaaaaaa atcataggct agccaaatag gcgattcttc aatattcctc gttgccagat
      961 agtatccaaa agtgattaaa gctaacccaa ttaacataaa aattagtgaa cctttagcta
     1021 ctttttcttc tttgtcatca tttttgaata gctgattcaa attataacgt aatacaagaa
     1081 aaactgcata aaccgatgtg aaaagcataa taccaaaaaa gaccagtatc gtatcgataa
     1141 tcgctttaaa tgaaataata aactctgcat caatcgcaag gccgacaatc caaaataaga
     1201 ccattgcaaa caatttagaa gagaaaattc caattaaaac gccaaaaata gttgcaagca
     1261 tatatagcat cgcattttca aaaaataata ctaatacaat ttgtgatttt cgcaaaccaa
     1321 gtaatgaata aagccctatt tctcgttttc gccttttaag aaaaaaacca ttggaataaa
     1381 atataaaaaa gataataaac aatattaaca tgagactagc tgacgaaaac atggccggtc
     1441 cgaataattc ccaacgttta aacactgtgt caatcagcgg gttatatgat aacgaaacaa
     1501 acgtaaaaaa aactaata
//
LOCUS       DASEAA010000301         1516 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.303, whole genome shotgun sequence.
ACCESSION   DASEAA010000301 DASEAA010000000
VERSION     DASEAA010000301.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1516)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1516)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1516
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.303"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(29..217)
                     /locus_tag="U0342_002997"
     CDS             complement(29..217)
                     /locus_tag="U0342_002997"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465728.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YjzD family protein"
                     /protein_id="HEM2424314.1"
                     /translation="MRYVVTVVWVFLLSLMAEFVLSSMLYVSFDMTRAIILTVGLSFF
                     IILITFLMPKDSEVYDFK"
     gene            540..>1516
                     /locus_tag="U0342_002998"
     CDS             540..>1516
                     /locus_tag="U0342_002998"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465727.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2424315.1"
                     /translation="MDRKCQLIMKKKFTQILLASVIVSSTLVPFVQAEAAGTSQTSVS
                     HAGMTLSQQQFIQSIANDAQDLQKEEKILTSVTLAQAILESNWGKSGLSTSANNLFGI
                     KGSYEGNSVSMGTQEFSSGKAYRTQADFRKYPDKKASLVDHAQLFVNGVSGNANLYSA
                     VIGETNYKEAAYAIQDAGYATDPAYAEKLISTIENYNLDQYDQIYDTVTSTENQLAYA
                     EIKDSSNETIWTKPYNTEGAEKIGSVKDYKNKSLRISQKAVTEKGTWYQLLNQGETIG
                     WVNSNAVEVFYTPKNETNVKLDKYITDSDQKIYAYPVEDNSKVVKNLND"
BASE COUNT          608 a          260 c          263 g          385 t
ORIGIN      
        1 cagttctcgc tatcagaaag ttggatattt acttaaagtc ataaacttcg ctatctttag
       61 gcatcaagaa agtgattaaa ataatgaaga aggataaccc tactgttaaa ataatagccc
      121 gcgtcatatc aaatgataca tataacatgg aagaaagaac gaattctgcc attaaagaaa
      181 gtaagaatac ccaaactaca gttaccacat aacgcatcct tacaccccat ttcatctatt
      241 tcattataca ttttagcaca taaaattaga ttatccaatc atatatcatt tgaaaatgcg
      301 attatcaaaa aaaggaagga aatgaaactt caacgaagaa tagtagtatt aaggggtaaa
      361 tgtgtaacga cataatattg tcaaatgtaa ataggtatgt gtgaaccctc taaaatagcc
      421 attttgctta ctttatgata aatttttcat caaaaaatta gtaggctctc agaatgaaaa
      481 tgctagaatg aagaaggtta acagagacag agccatttaa attgggggaa ctaactaatt
      541 tggataggaa gtgccaactg ataatgaaaa agaaattcac gcagatttta ctagcaagcg
      601 tcatcgtaag ttctacacta gtaccttttg ttcaagcgga ggcagcagga acgagccaaa
      661 cttcagtaag tcacgcagga atgactttat cacaacaaca atttatacaa tccatagcaa
      721 atgatgcaca agatctacaa aaagaagaaa aaatattgac gagtgtcact ttagcacaag
      781 ctattctaga atccaattgg ggtaaaagtg gcttatcaac ttcagctaac aacctgtttg
      841 gaattaaagg aagctatgaa ggaaattccg tttcaatggg aacgcaagaa tttagcagcg
      901 ggaaagccta ccgcacacaa gctgatttca gaaagtatcc agacaaaaaa gcatctttag
      961 tcgatcatgc ccaacttttt gttaacggag tatctggtaa tgcaaatctt tactcagcgg
     1021 tcatcggaga aacaaactat aaggaagcag catacgcaat tcaagatgca ggttatgcaa
     1081 ctgacccagc atacgcagaa aaactcattt caactattga aaattacaat ttggatcaat
     1141 atgaccaaat ttacgataca gtgacatcaa cagaaaacca attagcatat gcggaaatta
     1201 aagattctag caatgaaaca atttggacaa aaccatataa tacagagggc gcagaaaaaa
     1261 taggtagcgt caaagattac aaaaataaaa gccttcgaat ttctcaaaaa gctgtcacag
     1321 aaaaaggaac atggtatcag cttctaaatc aaggcgaaac tattggatgg gtaaacagta
     1381 atgctgtaga agttttttat accccgaaaa atgaaacaaa tgtgaaacta gataaatata
     1441 tcaccgattc ggatcaaaaa atctatgctt acccagtaga agataattca aaagtagtca
     1501 aaaatcttaa tgatta
//
LOCUS       DASEAA010000302         1505 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.304, whole genome shotgun sequence.
ACCESSION   DASEAA010000302 DASEAA010000000
VERSION     DASEAA010000302.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1505
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.304"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            173..565
                     /locus_tag="U0342_002999"
     CDS             173..565
                     /locus_tag="U0342_002999"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731469.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424316.1"
                     /translation="MGIFSKVETLEIISGKEQIGLKSNLTYMTEIAPGVVVFDNNETQ
                     YVYQGFIWNQDSKRSAGKTATGAIVGGVLTGGIGAIAGGAIGAKKKDISYAVISLLRV
                     SDASPVQLIIKCNKKKASKLGSFTIGRV"
     gene            655..>1505
                     /locus_tag="U0342_003000"
     CDS             655..>1505
                     /locus_tag="U0342_003000"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990844.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="recombinase family protein"
                     /protein_id="HEM2424317.1"
                     /translation="MTVGIYIRVSTEEQVKEGFSISAQKEKLKAYCTAQGWEDFKFYV
                     DEGKSAKDMHRPLLQEMITHIKKGLIDTVLVYKLDRLTRSVVDLHNLLSIFDEYNCAF
                     KSATEVYDTSSAMGRFFITIISSVAQFERENTSERVSFGMAEKVRQGEYIPLAPFGYV
                     KGPDGKLIINEAEKEIFLHVVNMVSTGYSLRQTCEYLTNIGLKTRRSNDVWKVSTLIW
                     MLKNPAVYGAIKWNNEIYENTHEPLIDKTTFDKLANILSIRSKSTTSRRGHVHHVFKG
                     RLICPQCG"
BASE COUNT          539 a          216 c          301 g          449 t
ORIGIN      
        1 gaagcacatc actttgctgt aagtttattg ttgtcagata tagatattga aagttttgat
       61 acaaaaaaga aatatgccta tatacaggta taccattaga attagaaaat tttataatga
      121 aataatcgtg cattacaatt atataattaa ctagaaaaag gagaagatac agatgggtat
      181 ttttagcaaa gtagaaacac ttgaaataat cagtggtaag gagcaaatcg gattaaaatc
      241 aaatctaact tatatgacag aaattgcacc tggcgttgtc gtttttgaca ataatgaaac
      301 acaatatgtc tatcaaggat ttatatggaa tcaagattca aaacgaagtg caggtaagac
      361 tgcaacagga gcaattgtag gtggtgttct tactggtgga atcggtgcaa tagctggagg
      421 agcaattggg gctaagaaaa aagatatctc atatgcggta atctctttac ttcgtgtttc
      481 tgatgcgtca cctgttcaat taattattaa gtgcaataag aagaaagcat ctaaacttgg
      541 aagttttact atcggaagag tttaaatagc ttgattataa agttttgccc tactcgggct
      601 tttctttaaa accaaaaaca gaacatacgt actatttcgg aggtgagcaa gttcatgact
      661 gtagggattt atataagggt ttccactgaa gaacaagtga aagaaggctt ttctatatca
      721 gcacagaaag agaagttaaa agcatattgc acagctcaag gatgggaaga tttcaagttt
      781 tacgtcgatg aaggtaaatc agcaaaagat atgcaccgcc ctcttctaca agaaatgatt
      841 acacatataa aaaagggact tattgacaca gttcttgtat ataaattgga tcgtcttact
      901 cggtctgttg tagatttgca taatttatta agtatatttg atgaatataa ctgtgcattt
      961 aaaagcgcta ctgaagtcta cgatacttct tccgctatgg gcagattttt cattacaata
     1021 ataagttcag ttgctcaatt tgaaagagag aatacatctg agcgtgttag ttttgggatg
     1081 gctgagaaag tgcggcaagg agaatatata ccccttgctc cattcggtta tgttaaaggg
     1141 cctgatggaa aacttattat aaatgaagca gaaaaagaaa tatttttaca tgtagtaaat
     1201 atggtttcta ctggttactc attacgacaa acatgtgaat atctaactaa cattgggttg
     1261 aaaaccaggc gttcaaatga cgtgtggaaa gtatctacac taatctggat gttaaaaaat
     1321 cccgctgttt atggtgcaat aaaatggaat aatgaaatat atgaaaatac acatgagcca
     1381 ctaattgata agacaacatt tgataaactg gcgaatattc tatcaataag aagtaagtcg
     1441 acaacaagtc gtcgtggcca cgttcatcac gttttcaaag gaagattaat atgtcctcaa
     1501 tgtgg
//
LOCUS       DASEAA010000303         1475 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.305, whole genome shotgun sequence.
ACCESSION   DASEAA010000303 DASEAA010000000
VERSION     DASEAA010000303.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1475)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1475)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1475
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.305"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..300)
                     /locus_tag="U0342_003001"
     CDS             complement(<1..300)
                     /locus_tag="U0342_003001"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424318.1"
                     /translation="MEYLVKIGSKKAMYINLNDLEREEKEISVKNVGRGIKQWLIDKQ
                     QKGKNILIKRTVTKNKVVWTTMKIPEKAVIEVVHAPDYRDLSASIVIKQEQKREIR"
     gene            complement(353..>1475)
                     /locus_tag="U0342_003002"
     CDS             complement(353..>1475)
                     /locus_tag="U0342_003002"
                     /inference="COORDINATES: protein motif:HMM:NF024849.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="SH3-like domain-containing protein"
                     /protein_id="HEM2424319.1"
                     /translation="LHKINFIDYTNKNITAYGEYKNRKLGTGIFKIEKESRNDLGSMY
                     QINKNNKKVLVNQSDISVIYKPGMEQKATGLKQVKNPNGYFYSHPTDGASLTNQKVSL
                     YQNRYLNVNAKATVKGETWYRVWINQHDGQRWTNPVLGWAKESNLKNPNDTTNNFKLT
                     FNVEEKTNQQGLTYNEGVYYIAFDLSNVGYPNHSKIIAYDHTGKKLKETSPLPIGHGA
                     ELNYYKGKIYASNGGGKDGAKVFVVDFENNRVDDVIDLSQYGTNALATVKDDDTIILH
                     TSVDSNKIHTFTIVDMKGNLKNQFTIENAWVPQGIAYYDGVIYFYTNNLITKINENGK
                     VLGQEYLSLKGESEGIEVNKESGKIIVGYNGNNRVYEQK"
BASE COUNT          405 a          271 c          186 g          613 t
ORIGIN      
        1 tctgatttca cgtttttgtt cttgcttaat tacaatacta gcacttaagt ccctgtagtc
       61 aggggcatga acaacctcta taacagcttt ttcaggtatt ttcatagtag tccatacaac
      121 tttattttta gttactgtgc gctttattaa gatatttttt cctttttgtt gtttatcaat
      181 taaccattgt ttgattcctc ttccaacatt tttaacacta atctcttttt cttccctttc
      241 caaatcattt agattaatgt acattgcctt tttactacca atcttaacta aatattccat
      301 taatgtgata tccttccaca aaaaaaacac cctgattggg gtgttttttc acttattttt
      361 gttcataaac tctgttattt ccattgtaac caacaattat tttaccactt tctttgttta
      421 cttctatacc ttctgattca ccttttaaag ataaatattc ttggcctaag accttgccat
      481 tttcgttgat ttttgttatt aaattgttgg tatagaaata gataactcca tcgtaataag
      541 ctatcccttg tggaacccag gcattttcta ttgtaaattg attcttaagg ttacctttca
      601 tatcaactat agtaaatgta tgaattttat tactatctac agaagtatgt aaaataatcg
      661 tatcatcatc ttttacagta gctaacgcat ttgtaccata ttgagataag tctattacat
      721 cgtccacgcg gttgttctca aaatctacta caaaaacttt tgctccatct ttaccaccac
      781 catttgaggc ataaatttta cctttgtaat aattaagttc agctccatgt ccaattggaa
      841 gtggtgatgt ctctttgagt ttctttccag tgtgatcata tgcaataatt tttgagtgat
      901 tcggatagcc cacatttgat aagtcgaaag ctatataata gacaccttca ttatatgtta
      961 agccttgttg attcgttttt tcttctacat taaatgtaag tttaaagtta ttagtggtat
     1021 cattaggatt tttaagattt gactcttttg cccatcctaa aactggattt gtccatcttt
     1081 gaccatcatg ttgattaatc caaactctgt accatgtttc accttttact gttgctttcg
     1141 catttacatt aagataccta ttttgatata ggcttacttt ttgatttgtt agagaagctc
     1201 catcagtagg atggctataa aaatagccat taggattttt cacttgcttc aatccagttg
     1261 ctttttgttc cattcccggc ttataaatga ccgaaatgtc actctgatta actagtactt
     1321 ttttattatt tttattaatt tgatacatgc tgcctaaatc atttctgctt tctttttcaa
     1381 ttttaaagat tccagttcct aattttctat ttttatattc accatacgca gtaatgtttt
     1441 tattcgtata gtcaataaag tttatcttat gcaaa
//
LOCUS       DASEAA010000304         1453 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.307, whole genome shotgun sequence.
ACCESSION   DASEAA010000304 DASEAA010000000
VERSION     DASEAA010000304.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1453)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1453)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1453
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.307"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1226
                     /locus_tag="U0342_003003"
     CDS             <1..1226
                     /locus_tag="U0342_003003"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464292.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="glycoside hydrolase family 125 protein"
                     /protein_id="HEM2424320.1"
                     /translation="VEMYKRCMENTLDTTIKIRDSGLTFILTGDIPAMWLRDSVCQVR
                     PFLIFAKENEEIESMLIGLSKEQVSLVEIDPYANAFNETPNGAGHQADKTEMHPQVWE
                     RKYEIDSLCYPIQLAYFIWKITGRTEQFDSAFFKMLQTIFALWEVEQHHETKSPYRFE
                     RMDCVPSDTLKRNGLGTETAYTGMLWSGFRPSDDACEYGYLIPSNMFAVVVLGYAKEI
                     IEAFYPREIETIKQAVTLQNDIQLGIEKFGTYNHPTFGEIFAFEVDGLGNQLLMDDAN
                     VPSLLSMPIIEYLEKESPIYQNTRKFILSKSNPYYFEGKLAKGIGSPHTPAGYIWPIG
                     LAIQGLTASDKSEKLEILQMLLRTDAGTGLMHESFHPDYPEDFTREWFSWANMMFCEL
                     VLDVAGFRMANVLKN"
     gene            1243..>1453
                     /locus_tag="U0342_003004"
     CDS             1243..>1453
                     /locus_tag="U0342_003004"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464293.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter permease"
                     /protein_id="HEM2424321.1"
                     /translation="MATIRNKSAQIHQQRMAYLFIALPVLLLAIFMILPIGMALFVSF
                     TDYDIVNSPNWIGFDNYIKMFRDPYF"
BASE COUNT          492 a          218 c          287 g          456 t
ORIGIN      
        1 tagttgaaat gtataaaagg tgtatggaaa acacattaga caccaccata aaaattcgag
       61 atagtggact cacatttatt ttaacaggtg atattccagc aatgtggcta cgtgattcag
      121 tatgccaagt acgacctttt ctaatttttg ctaaagaaaa tgaagaaatt gagtcgatgt
      181 tgattggcct tagcaaagaa caagtgagtt tagttgaaat tgatccttat gctaacgctt
      241 ttaatgaaac accaaatgga gctggacatc aagctgataa aacagaaatg catccacaag
      301 tatgggaacg aaaatatgag attgattcat tatgctatcc gattcaatta gcgtacttta
      361 tttggaaaat tactggaaga acagaacaat ttgactcagc atttttcaag atgttacaaa
      421 cgatttttgc tttatgggaa gtagaacaac atcatgaaac aaaatcgccg tatcgttttg
      481 aacggatgga ctgtgttcct tctgatactc taaaaagaaa cggactagga acagaaacag
      541 catacacagg aatgctttgg tcaggattta gaccaagtga tgatgcttgt gaatatgggt
      601 accttatccc ttcaaatatg tttgcagtag tagttttagg ttatgctaaa gaaattatag
      661 aagcttttta tccaagagaa atagaaacga taaaacaagc agttacttta caaaatgata
      721 ttcaattagg gattgaaaag tttggtacat ataatcatcc gacttttggt gaaatatttg
      781 cttttgaagt agatggtctt ggaaatcaat tattgatgga tgatgcaaat gttccaagtt
      841 tactctctat gccaatcatc gaatatcttg aaaaggaatc tcccatttat cagaatacgc
      901 ggaagtttat tttaagtaag tcaaatccgt attattttga aggtaaacta gcaaaaggaa
      961 ttggtagtcc gcatacacca gcaggatata tttggccaat tggactggca attcaaggat
     1021 tgacagcaag tgataaatca gaaaaactgg aaattttgca aatgttgtta agaacggatg
     1081 ccggaactgg attaatgcat gaatcgtttc atccagatta cccggaagac tttacgcgcg
     1141 aatggttttc ttgggctaat atgatgtttt gtgaattagt acttgatgta gctgggtttc
     1201 gaatggcaaa tgttttgaag aactaacgaa ggaggcttat tgatggcaac aattagaaat
     1261 aaatctgccc aaatacacca acaacgaatg gcttaccttt ttattgcact tccagtttta
     1321 ttactagcga tttttatgat tttaccaatt ggaatggcgc tatttgtcag ttttacagat
     1381 tatgatattg ttaattctcc caattggatt ggctttgaca attacataaa aatgtttaga
     1441 gatccttatt ttc
//
LOCUS       DASEAA010000305         1443 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.308, whole genome shotgun sequence.
ACCESSION   DASEAA010000305 DASEAA010000000
VERSION     DASEAA010000305.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1443)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1443)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1443
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.308"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1443
                     /locus_tag="U0342_003005"
     CDS             <1..>1443
                     /locus_tag="U0342_003005"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730527.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="GW domain-containing glycosaminoglycan-binding
                     protein"
                     /protein_id="HEM2424322.1"
                     /translation="NVGRAKITSPVSNGIWSKPYNVYGREFVTNATTYAQQEIKLLRE
                     AQTAKGTYYQFSINNKTIGWIDKRALTIYPYDSIISSKNVNLDGQITNPTGNGIWTKA
                     YKLEGTTSVAQATKYANKDVKISQQIETQHGTYYNISIDGKAIGWLDRNAITLYDQEE
                     YNKTVAIDAVVKNVKGNAVWTEPYRTVGTKLIGPAETYLNKEVEVVREAKTPKGTYYQ
                     FKSGGKVIGWLDKKAFDVYDNINYNKAVNLDAVVENVTGNAVWTAPYKSKGIKLVTSA
                     ATYKGKATKITREAQTSRGTYYEFSVDGKVIGWLDKKAFDVYDNINYNKAVNLDAVVE
                     NVTGNAVWTAPYKSKGVKLVTSAATYKDKATKITREAQTSRGTYYEFSVNGKVIGWLD
                     KKAFDVYDSIEYNKAINMTGLLSNAPGNGIWTEPYRVIGTKNVGQATAYANKTVQLIR
                     EAKTTRATYYQMSVNGKIVGWVDKRAFTNV"
BASE COUNT          546 a          224 c          302 g          371 t
ORIGIN      
        1 aaatgtcgga cgtgctaaaa ttactagccc agtaagtaac ggtatctggt ctaaaccata
       61 caatgtttat ggaagagaat ttgttacgaa tgcaacaact tacgcacaac aagaaattaa
      121 acttttacgc gaagcacaaa ctgctaaagg tacttattac caatttagca taaataataa
      181 aactattggt tggattgata aacgagctct cactatctat ccgtatgatt ccattatttc
      241 aagtaaaaat gtgaaccttg acggacaaat tactaatcca accggaaatg gtatttggac
      301 taaagcgtac aaacttgaag gaacaacttc tgtggcgcag gctacgaaat atgcaaataa
      361 agatgtgaaa atcagccaac aaatcgaaac tcaacatggt acttattaca atatcagtat
      421 cgatgggaaa gcaattggtt ggttagatag aaacgctatt acactgtatg atcaagagga
      481 atacaataaa acagttgcta ttgacgcagt agtaaaaaat gtgaagggta atgctgtatg
      541 gacagaacct taccgtacag ttggtacaaa attaatcgga ccagcggaaa cttacttgaa
      601 taaagaagtg gaagtcgtcc gtgaagcaaa aacgccaaaa ggaacttact accaatttaa
      661 atctggtggc aaagtaatcg gctggttaga taaaaaagct ttcgatgtat atgacaatat
      721 taattacaac aaagcggtta atttagatgc tgtagtggaa aatgtgacag gtaatgcagt
      781 ttggacggct ccttataaga gtaaaggaat taaacttgtt acttcagcag caacctataa
      841 aggcaaggca acaaaaataa ctcgtgaagc gcaaacaagt agaggaacat attacgagtt
      901 tagtgttgat ggtaaagtca ttggctggtt agataaaaaa gctttcgatg tatatgacaa
      961 tattaattac aacaaagcgg ttaacttaga tgctgtagtg gaaaatgtga caggcaacgc
     1021 agtttggact gctccatata agagtaaggg tgttaaatta gttacttcag cagccacata
     1081 taaagataaa gcaactaaaa taactcgaga agcgcaaaca agtagaggaa cttactacga
     1141 atttagcgta aacggcaaag taatcggttg gttagataaa aaagcttttg atgtatatga
     1201 ttctattgag tacaataaag cgattaatat gactggatta cttagcaacg cgccaggtaa
     1261 tggcatttgg acagagccgt atagagttat tggcacaaaa aatgtaggac aagcaactgc
     1321 ttatgctaac aagacagtac agttgatacg cgaggctaag actacacgtg caacttacta
     1381 tcaaatgagt gtaaatggta aaatagttgg ttgggtagat aaacgagctt ttacaaacgt
     1441 taa
//
LOCUS       DASEAA010000306         1400 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.309, whole genome shotgun sequence.
ACCESSION   DASEAA010000306 DASEAA010000000
VERSION     DASEAA010000306.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1400
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.309"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     regulatory      187..278
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00504"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="glycine riboswitch; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="glycine"
                     /db_xref="RFAM:RF00504"
     gene            362..>1400
                     /gene="gcvT"
                     /locus_tag="U0342_003006"
     CDS             362..>1400
                     /gene="gcvT"
                     /locus_tag="U0342_003006"
                     /EC_number="2.1.2.10"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464873.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycine cleavage system aminomethyltransferase
                     GcvT"
                     /protein_id="HEM2424323.1"
                     /translation="MTELLKTPIHPLYAKYGAKTIDFGGWDLPVQFAGIKAEHEAVRT
                     DAGLFDVSHMGEILVKGPDSTSYLQYLLTNDIEKIKIGKAQYNIMCYETGGTVDDLVV
                     YKKSETEYILVVNAANTDKDFEWMVKNIRGDVSVTNVSSEYGQLALQGPSAEKILAKL
                     TDVDLSSISFFGFVEDADVAGVKTIISRSGYTGEDGFEIYMPSADAGKVFEAILAEGV
                     APIGLGARDTLRLEAVLALYGQELSKDITPLEAGLNFAVKLKKEADFIGKEALIKQKE
                     AGLNRKLVGIELIERGIPRHDYPVFLNEEEIGIVTSGTQSPTLGTNIGLALIDTAYTE
                     IGQEVEVGIRNK"
BASE COUNT          499 a          207 c          315 g          379 t
ORIGIN      
        1 tgattttcac aatctatgtg caatgaataa caagcgtata attaaacggt aatatcgcaa
       61 taaagccctt acattccgaa ccaatatcaa aaataaagaa aatttaagct ttaaaactaa
      121 ttatttgccg aacaatacaa ctcatgataa gctatagaaa aggcaaatac ataatagaat
      181 tagcgggtga atgtaagcag agagactgcg aaaagcggcg ccgacgggga aagcatgtat
      241 tatgtgaaac tctcaggcaa aaggatgttt acgggacgca actctggagt catttttgtg
      301 ttacgacagg gcttatgaac catataagcc tttttgttat gtgaaaaagg aggatataat
      361 tatgacagag ttactaaaaa caccgattca tccactttat gcaaaatatg gtgcgaaaac
      421 cattgatttt ggtggatggg atttaccggt acaatttgct ggtataaaag cagaacatga
      481 ggccgtgcga actgatgcag ggctatttga tgtgtctcac atgggagaaa ttctagtaaa
      541 aggaccggat agtacttctt atttacagta tttgttaacc aatgacattg aaaaaataaa
      601 aatcggaaaa gcacaatata atattatgtg ctatgaaact ggtggaacag tggacgattt
      661 agtagtttac aagaaatcag aaacggaata catacttgtt gtcaatgcag caaatacgga
      721 caaggatttt gaatggatgg ttaaaaatat tcgcggggat gtttctgtta ccaatgtatc
      781 ttcggaatat ggacaattag cacttcaagg gccaagcgca gaaaaaattc tcgcaaaact
      841 aacggatgta gatttaagtt cgattagctt ctttggattt gtggaggatg cggatgtagc
      901 aggagtgaaa acaatcattt caagaagtgg ctatactgga gaagatggat ttgaaattta
      961 tatgccaagc gctgatgcag gaaaagtttt tgaggcaatt ttagctgaag gagtagctcc
     1021 aattggttta ggtgcacggg atacattgcg cttagaggcg gtacttgcgc tttatgggca
     1081 agaattgagc aaggacatta caccacttga agcagggctt aattttgctg ttaaattaaa
     1141 aaaagaagca gattttatag gtaaagaagc gcttattaaa caaaaagaag cagggctgaa
     1201 tagaaaacta gttggtattg aattaattga acgaggtatt ccgcgtcacg attatccagt
     1261 atttctaaat gaggaagaaa ttggcattgt gacttctggt acccaatcac ccacacttgg
     1321 aacaaatatt ggtcttgctc taattgatac agcttacaca gaaataggtc aagaagtaga
     1381 agtaggtata agaaacaaaa
//
LOCUS       DASEAA010000307         1365 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.310, whole genome shotgun sequence.
ACCESSION   DASEAA010000307 DASEAA010000000
VERSION     DASEAA010000307.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1365)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1365)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1365
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.310"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(83..1276)
                     /gene="mdrL"
                     /locus_tag="U0342_003007"
     CDS             complement(83..1276)
                     /gene="mdrL"
                     /locus_tag="U0342_003007"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464934.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="multidrug efflux MFS transporter MdrL"
                     /protein_id="HEM2424324.1"
                     /translation="MMTDKEMNTGKWITAAASLLAFMGIGVVDPLLPSIAESIGASHS
                     QVEMLFTAYIFTMAIMMIPIGIVAGKLGDKKLIVIGLFIVTIFALLCGLSDTIGALSI
                     FRAGWGFGNSMFMATAMTMLIALSETPGHAIGIYEASMGLGMAFGPLLGGILGNISWR
                     YPFFATACLIFIAFLLILFKVKEPKKVAPAPTEKNEVAIKQMLHLFKYRPFLQIAFSG
                     MFYYYCFFTILAYSPLILGLSAIQIGFVFFAWGLCLALGSAKISHALEFRFNSKQILK
                     GSLLACAVILALLGFIDNIAVDIGLIVISGLILGINNALFTTTVMEHSPYARSVTSGA
                     YNFVRWLGAAFAPLCSGLLSEALGMKMPFIVASVICLAGMGLLFIKLKPSHFTLQQST
                     SIESE"
BASE COUNT          505 a          276 c          199 g          385 t
ORIGIN      
        1 ataattttta acgataatca ttaaataatt aacttttagc ataaaaaaag actgagccgg
       61 attactcagt ctctttatta ttttattcac tttctataga agtagattgt tgtaaggtaa
      121 aatgtgatgg ttttagttta ataaatagta atcccatgcc tgccaaacaa atgacgctcg
      181 ctacgataaa tggcattttc ataccaagcg cttcgctgag taacccagaa caaagtggcg
      241 caaacgcagc gcctaaccaa cgcacaaaat tatatgctcc actagtcaca cttcttgcat
      301 acggtgaatg ttccataaca gtggttgtaa atagtgcgtt attgattcct aaaatcaagc
      361 cagaaataac aatcaaacct atatctacag ctatattatc aataaatcca agtaatgcta
      421 agataacagc acatgccagt aaagatcctt ttaagatttg tttgctatta aaacgaaact
      481 ccaacgcatg tgaaattttt gccgaaccca acgccaaaca taatccccaa gcaaaaaata
      541 caaaaccaat ttgaattgct gataatccaa gaataagtgg cgaataagct aaaattgtaa
      601 agaaacaata ataataaaac attccactaa aagcgatttg taaaaatggt cgatatttga
      661 ataaatggag catttgcttg atagcaacct catttttctc tgtaggtgct ggtgcgactt
      721 tcttcggttc ttttacttta aataaaataa gtaaaaatgc gataaaaatt agacaagctg
      781 tcgcaaaaaa tggatagcgc caagaaatat tacctagaat acctcctagt agtggtccaa
      841 atgccatccc aaggcccatg gaagcttcgt aaatcccaat tgcatgtcct ggtgtctctg
      901 ataaagcaat aagcattgtc atcgcagtag ccatgaacat agagttacca aaaccccaac
      961 cagcccgaaa aatagataaa gcaccaattg tatcagataa accacataat aatgcaaaaa
     1021 tagtaacaat aaatagtccg ataacgatta actttttatc tccaagcttt ccggcaacaa
     1081 taccaatcgg aatcatcata atcgccatag taaaaatata agcggtgaat aacatttcta
     1141 cttgcgagtg agatgcccca atactttctg caatagaagg taaaagtgga tcaacaaccc
     1201 ctattcccat aaacgcaagc aaactagctg ctgctgttat ccatttcccc gtattcattt
     1261 ccttgtctgt catcataata caactacact tccctttcta aataaaactc aattattata
     1321 ttacgcttga taaatactaa tgtcaatatt tacatatata attta
//
LOCUS       DASEAA010000308         1331 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.311, whole genome shotgun sequence.
ACCESSION   DASEAA010000308 DASEAA010000000
VERSION     DASEAA010000308.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1331)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1331)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1331
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.311"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..979
                     /gene="namA"
                     /locus_tag="U0342_003008"
     CDS             <1..979
                     /gene="namA"
                     /locus_tag="U0342_003008"
                     /EC_number="1.6.99.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465994.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="NADPH dehydrogenase NamA"
                     /protein_id="HEM2424325.1"
                     /translation="TLKNRIVMSPMCMYSVENKDGIATDFHFAHYVSRAAGGTGLVIL
                     EATAVQEVGRISEFDLGLWNDEQVPALKKLVDGLHYHGAKAGIQLAHAGRKAVLPGEI
                     VAPSAIAFDEKSDKPVELTKEAIKEVVADFKRAAYRAKEAGFDVIEIHAAHGYLIHQF
                     LSPITNRREDNYGGPAGNRYKILSDIIKAVKEVWDGPIIVRVSATDYAHGGLQLEDHI
                     PFAKWMKADGVELIDVSTGGLVNVAPPVFPGYQVPFADEIRRGAGIATGALGLITRGE
                     QAEEILCNERADLIIVGRELLRNPYFAKDAAKQLGETIEGPKQYSRAWK"
     gene            complement(1032..>1331)
                     /locus_tag="U0342_003009"
     CDS             complement(1032..>1331)
                     /locus_tag="U0342_003009"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2424326.1"
                     /translation="QSQNGELPDQTINQGNTCTIDLPIYFQMEEINMLVSPEVTGEYI
                     GTNIVQLPTTVNAEDNSITVDTSALSPGEYKLDISYNHNYATGGVCSYDWNVTIN"
BASE COUNT          410 a          227 c          300 g          394 t
ORIGIN      
        1 aacgctaaaa aacagaattg ttatgtcacc aatgtgtatg tattcagtag aaaataaaga
       61 cgggattgca acagactttc attttgcaca ctatgtctcg agagctgctg gtggtacagg
      121 gcttgtcatc ttagaagcta cggctgttca agaagtagga cggatttctg aatttgattt
      181 aggactatgg aatgacgagc aagttccagc tttgaaaaaa ttagtagatg gacttcatta
      241 tcacggagca aaagcaggaa ttcaattagc acacgctgga agaaaagctg ttttaccagg
      301 tgaaatagtg gctccttctg ctattgcttt tgatgaaaaa tcagacaaac cagtagagct
      361 tacgaaagaa gcaattaaag aggttgtggc tgattttaaa cgtgccgctt atcgtgcaaa
      421 agaagcggga tttgatgtta ttgagattca tgctgctcat ggttatttaa ttcaccaatt
      481 cttatcacca attacgaatc gtcgcgaaga taattacggt ggacctgctg gcaatcgata
      541 taaaatttta agtgatatta ttaaagcagt gaaggaagta tgggacggcc cgattatcgt
      601 tcgagtatcc gctactgact atgcacatgg cggtttgcaa ctagaagatc atattccttt
      661 tgcaaaatgg atgaaagcag atggcgtgga actaattgat gtgagtacag gtggtttagt
      721 taatgtggct ccaccagttt tcccaggtta tcaagtgcca ttcgcggatg aaatccgtcg
      781 cggggcgggt attgcgactg gagcgcttgg gcttattaca cgaggcgaac aagcggaaga
      841 aattttatgc aatgaacgag cggatttaat tattgttggt cgtgaattat tacgaaatcc
      901 ttattttgct aaagatgcag ccaaacaatt aggcgaaaca attgaaggac caaaacaata
      961 ttcacgcgcg tggaaataaa taaaaagctg gaagttcaga gtttttgaac ttccagcttt
     1021 tttagtagaa attaattaat agttacattc caatcataag agcatacgcc tccagtggca
     1081 taattgtgat tatacgagat gtctaattta tactcaccag gacttagagc ggatgtatcc
     1141 actgttatag agttgtcctc cgcattaact gtcgtcggaa gttggactat attagtcccg
     1201 atatattctc ctgtaacttc tgggctgact aacatgttaa tttcttccat ttggaaataa
     1261 ataggtaaat caatagtaca tgtattgccc tgattaatag tttgatcagg aagctctcca
     1321 ttttgacttt g
//
LOCUS       DASEAA010000309         1328 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.312, whole genome shotgun sequence.
ACCESSION   DASEAA010000309 DASEAA010000000
VERSION     DASEAA010000309.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1328)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1328)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1328
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.312"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..881
                     /locus_tag="U0342_003010"
     CDS             <1..881
                     /locus_tag="U0342_003010"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463838.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424327.1"
                     /translation="DFGSDIINVFAGKNSRTSLDRKSKNPFQVSKEWTEEVLKEFNPK
                     NPTSTGHSLGGALSHYNSILYDFNATTYAAPNIYQLLPEDKQKKVRDGFYNNSIIDFT
                     HDDDMIRTFDQFSSPIVGSQYIAERNNVKVGVKGVFGAIPGHYNETFEGCFSSDGTMK
                     LKVDVDSIIKHAQDIDNIIQSLQTNNDDLENLEEKLQIGSKKIQNQLEEEIRIGGVYS
                     ELTTWDIDDVLTELCTKYKNGVYCFYNPNEFEKYYEMNHQTRRLLKNFQIELVDAAQS
                     FRETNTSLGEWISNNN"
     gene            1049..1324
                     /locus_tag="U0342_003011"
     CDS             1049..1324
                     /locus_tag="U0342_003011"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724239.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424328.1"
                     /translation="MKKQVRLKILKLDAKKSVGILTQQAREEIAMIQKGNEKIGDELK
                     FIQDKLADAFESRTAKAVQSWMKHIREEELEEQKEVLVICKESIRMD"
BASE COUNT          525 a          168 c          247 g          388 t
ORIGIN      
        1 aagattttgg cagtgatatt attaatgtat ttgcagggaa aaattctaga actagcttag
       61 atagaaaatc aaaaaatcct ttccaagtct ctaaagaatg gacagaagag gtattaaaag
      121 aatttaatcc taaaaatcct acttctactg gacatagttt aggcggagcg ctatcgcatt
      181 ataattcaat tttatacgat tttaatgcga ctacatacgc agctcctaat atttatcaat
      241 tattacctga agataagcaa aagaaagttc gtgatggctt ttataataat tcaattattg
      301 atttcactca tgatgatgac atgattagaa cttttgatca atttagttca cctattgtag
      361 gttcccaata tatagcggaa cgaaataacg tcaaagttgg agtcaaagga gtttttggag
      421 ctattccagg gcactacaat gaaacatttg aaggctgttt ttctagcgat ggaacgatga
      481 agttaaaagt agatgtagat tctattatta aacatgctca agacattgat aatattattc
      541 agtcactaca aacgaataat gatgacttag agaaccttga agaaaaacta caaataggtt
      601 ccaagaaaat acaaaatcaa ttagaggaag aaataagaat tggtggagtt tatagtgaat
      661 tgactacctg ggatatagat gatgttttaa cagaactatg tacaaaatat aaaaatggag
      721 tttattgttt ttataatccg aatgagtttg aaaaatatta tgaaatgaat catcagacac
      781 gtagactatt gaaaaatttt caaatagagc ttgttgatgc agcgcagtct tttcgagaaa
      841 caaatacaag tttaggagaa tggatttcta ataacaatta aaaggaagtg agattatatg
      901 tatagcaata cttatcaacg cgaatacgca cgtgcaattg gggatacatc ttatgatttg
      961 agctatcact tcaaattatt gagcgagaac tcaagaaaaa aatttaactg ccaaagaacg
     1021 ttcgaattta cttgtagcag aaagtacttt gaaaaaacaa gttcgattga aaatcttaaa
     1081 gctagatgca aaaaaatcag taggaatact aactcagcaa gctagagaag aaatagctat
     1141 gattcaaaaa ggaaatgaaa aaattggaga tgaattaaaa tttattcaag ataaattagc
     1201 ggatgcattt gaatccagaa ctgcaaaagc tgttcaaagt tggatgaagc atatccggga
     1261 agaagaattg gaagagcaaa aagaggttct tgttatttgt aaagaaagta tcagaatgga
     1321 ttaatata
//
LOCUS       DASEAA010000310         1327 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.313, whole genome shotgun sequence.
ACCESSION   DASEAA010000310 DASEAA010000000
VERSION     DASEAA010000310.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1327)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1327)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1327
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.313"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            37..810
                     /locus_tag="U0342_003012"
     CDS             37..810
                     /locus_tag="U0342_003012"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464641.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2424329.1"
                     /translation="MKTKMPEMLSFISEEAVSRKMTSEEIAAHFGYDKHHFSRKFKEI
                     NGFSVVEFLSSLKVEKAIIELNEEKRILDLQEHSGFESSGSFTNTFKKYTGSSPRKYK
                     TEMNDIFYDMKRFENDNKDKSIAHFQEKNDSFCTVTIDVPDEFEKGIIFIGLFRTLIP
                     NHMPISGLATKNLIGNQLKNIPSGDYYLLACAISQSNNILSYFNLSNSLRGKEDEKLS
                     FPKCSGKHYAIKLREPIPEDPPILANVGKILISCLKNTI"
     gene            875..1231
                     /locus_tag="U0342_003013"
     CDS             875..1231
                     /locus_tag="U0342_003013"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2424330.1"
                     /translation="MALNAKSITIGLPVSDLEKSASWYEKLFMSDEKLTPVEGVVEYQ
                     IGSVWIQLFEEKINVSENVLRIGVEDLDVEFERLKKLGVITDEVIEDAPGIIRYFVFS
                     DPDGNKLSFYWLYDQE"
BASE COUNT          477 a          155 c          273 g          422 t
ORIGIN      
        1 tttttagaaa aactgctcta aaaaggaggg ggaacgatga aaacgaagat gcctgaaatg
       61 ctttctttca tttcagaaga agctgttagt agaaaaatga caagtgagga aattgctgct
      121 cattttggtt atgataaaca tcactttagt cgaaaattta aagaaattaa tggattcagt
      181 gtggttgaat tcctttctag tttaaaagtg gaaaaggcga ttattgaact taatgaagaa
      241 aagcgtattc tcgacctaca agaacattca ggttttgaaa gtagtggtag tttcacgaat
      301 acttttaaaa aatatacagg tagttctcct agaaaataca aaacggaaat gaatgatatt
      361 ttttatgata tgaaacgttt tgaaaatgat aataaggata agtcgatagc gcattttcaa
      421 gaaaagaatg attctttttg tacggtaact attgatgtac ctgatgaatt tgagaagggt
      481 atcatattta ttggactttt ccgtactctt ataccgaatc atatgcctat atcgggatta
      541 gctactaaaa atttaatagg aaatcaattg aaaaatattc caagtggaga ctattattta
      601 ttagcttgtg cgataagcca gtctaataac attctatctt attttaactt aagtaatagt
      661 ttgagaggga aagaagatga aaagctatct tttcctaaat gttctggcaa gcattacgcg
      721 attaagctga gagaaccaat accagaagat ccgccaatat tagctaatgt gggaaaaatt
      781 ttaatctcct gtttgaagaa cacaatctag aacaatattg tttgactatg aaatgttaaa
      841 ataattgcag gctaatgaaa aggagagata agatatggct ttaaatgcaa agagtatcac
      901 tataggacta ccagtaagtg atttggagaa atctgctagt tggtatgaaa aactatttat
      961 gagtgatgaa aaattaacac cagttgaagg cgttgttgaa tatcaaattg gttcagtttg
     1021 gattcaactt tttgaagaaa aaataaatgt ttcagaaaac gttttacgca taggggtaga
     1081 agatttagat gtggaatttg aacgtttaaa aaaacttgga gtaataactg acgaggtgat
     1141 agaagatgca cctggtatta ttcgatattt tgtcttctct gatccagatg gtaataagtt
     1201 gtcattctat tggttgtatg atcaggaata gatttgaaca ggattatagg atggatgtaa
     1261 cgcttaaacg acggatgtat gacgtcgttt tttgatgtta gaaataatgc ttaagtgggg
     1321 taagata
//
LOCUS       DASEAA010000311         1284 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.314, whole genome shotgun sequence.
ACCESSION   DASEAA010000311 DASEAA010000000
VERSION     DASEAA010000311.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1284)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1284)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1284
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.314"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..462
                     /locus_tag="U0342_003014"
     CDS             <1..462
                     /locus_tag="U0342_003014"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728337.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR/AcrR family transcriptional regulator"
                     /protein_id="HEM2424331.1"
                     /translation="IGKRKFYTCFPSKEACLFEVVEYSYQAQLEAFKKIMEEKGSLKS
                     KMTRFLKEVYLSEKSINNYFSPEDFHAILQKLPPTYTEREERMTSEVLETAMTYIDLT
                     RAQWEALVMLLDCLTYTATRSYVETAKKAKEETLDILINSIADYVEKQTQC"
     gene            490..1269
                     /locus_tag="U0342_003015"
     CDS             490..1269
                     /locus_tag="U0342_003015"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="methyltransferase domain-containing protein"
                     /protein_id="HEM2424332.1"
                     /translation="MNKETERKLAASLTSQSIEILPFIPYFLQDFFELGSSPKDITYL
                     IKQHMPLSAESNFLDLACGKGAVSIGIAKELGNPVKGIDLIPAFIEEAKCKAKEAQVE
                     SLCQFEVGDVNKSVQNEKNYDAVIFGAAADILGNPAETLEKLQGTVKEGGYIIIDEAY
                     VPELAHNNQVKYQNYEYLTRNEWLNLFEQNQLQLVEELEGTAEVDFELEKQHLLTRAN
                     ELIQQYPEKKTLFEGYLKSQWSEYDDLEEHLIAVTWILHKK"
BASE COUNT          481 a          192 c          267 g          344 t
ORIGIN      
        1 attggaaagc gaaaattcta tacgtgtttt ccctccaaag aagcatgcct atttgaggtg
       61 gtggaatatt cctatcaagc acaattagag gcatttaaaa aaattatgga ggagaaaggt
      121 tcgttaaaaa gcaagatgac tcgttttttg aaagaagtct atctttcaga aaagagtata
      181 aataactact tttcaccgga agatttccac gcaatactcc aaaaactccc tccaacatat
      241 acggaaagag aagaaagaat gacaagtgaa gtcctggaaa ctgccatgac gtatatcgat
      301 cttacgagag ctcaatggga ggctttagtg atgttactgg attgtttgac ttacactgcg
      361 acaaggagtt atgtagaaac tgccaaaaaa gcgaaagaag agactttgga tatattaata
      421 aattctatag ctgattacgt agaaaaacag actcagtgct aacgaaaaat attttaggag
      481 ggtaaataaa tgaataaaga aaccgaacga aagcttgctg cgtcactcac ttctcaatca
      541 atagaaatat taccgtttat tccgtatttt ttacaagatt tttttgaatt gggtagtagt
      601 ccgaaagata ttacttattt aattaagcaa catatgccgt tatcagctga aagtaatttt
      661 ttggatttag cttgcggaaa aggagctgtt tccattggta tcgctaagga actaggaaac
      721 cctgtcaaag gaatagattt aattccggca tttatagaag aagcaaaatg caaagcgaaa
      781 gaagcgcaag tagagtcact gtgccaattt gaagtaggag atgtaaataa atcggttcaa
      841 aacgaaaaaa attatgatgc cgttatattt ggtgcagcag cagatatact tggaaatcca
      901 gcagaaacgt tggaaaaatt gcagggaact gttaaagaag gcggttatat tattatagac
      961 gaagcatatg tgcctgaatt agcgcacaat aaccaggtga agtatcaaaa ttatgaatat
     1021 ctcactcgaa acgaatggct gaatttattt gaacagaatc aattacaatt ggtggaagag
     1081 ctagagggaa cagcagaagt ggattttgaa ctggaaaagc aacacttatt aacaagagcc
     1141 aatgaattga ttcaacaata tccagagaaa aaaacccttt ttgaaggata ccttaagagc
     1201 caatggagtg aatacgatga cttagaggaa catcttattg ctgttacctg gattttacat
     1261 aaaaagtaaa cattgaaagg aagt
//
LOCUS       DASEAA010000312         1267 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.315, whole genome shotgun sequence.
ACCESSION   DASEAA010000312 DASEAA010000000
VERSION     DASEAA010000312.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1267)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.315"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            98..1171
                     /locus_tag="U0342_003016"
     CDS             98..1171
                     /locus_tag="U0342_003016"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003532932.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="site-specific integrase"
                     /protein_id="HEM2424333.1"
                     /translation="MAAFKDKNGTWFTSFRYINWQGEKKQKVKRGFSTRKEALEWERQ
                     FLQQKTADLTMTFLSFWEIYKKDMKNRIRESTWETKISIVERKILPYFKNRKMSEIAP
                     KDIIQWQNEMISYRDKNGKAYSPVYLKTLHNQLSAMFNHAVRFYELKSNPARKAGNMG
                     KEKSVEMLFWTKEEYQKFSDSMMDKAISFYAFEILYWCGIRLGELLALTASDFDFNKG
                     TLSISKSCQRLKGMDVITEPKTPKSNRIIQMPEFLGEEIQEYIQSIYKWEPDERLFPI
                     TKSYLHSEMTRGAKEQKIKRIRIHDLRHSHVSLLIDSGFSAVAIADRLGHESIDVTYR
                     YAHLFPTKQMEIANMLDNLKGEY"
     gene            1173..>1267
                     /locus_tag="U0342_003017"
     CDS             1173..>1267
                     /locus_tag="U0342_003017"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724640.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="mobilization protein"
                     /protein_id="HEM2424334.1"
                     /translation="MSVKTLDGKGRWRNKIVAFRVSPEENEHLNKL"
BASE COUNT          496 a          173 c          255 g          343 t
ORIGIN      
        1 atgaacgtgg atttatcaca attgctgggc gcgtcagtag aaaatattat gaagaaaaat
       61 tatatggaga aatacaaaaa gaaggaggaa attaacattg gcagcattca aagataaaaa
      121 cggtacctgg tttacgtcat ttcggtatat taattggcaa ggtgaaaaaa agcaaaaagt
      181 gaaacgagga ttctctacaa gaaaagaagc acttgaatgg gaacgacaat ttttacaaca
      241 aaaaacagca gacttaacaa tgactttcct gtccttttgg gaaatttata agaaggatat
      301 gaaaaataga attagagaga gtacttggga aactaaaata agtattgtag aaagaaagat
      361 attaccgtat ttcaagaata gaaaaatgag tgagattgca ccaaaagata ttatccaatg
      421 gcagaatgaa atgatttctt atcgagataa aaacgggaaa gcttattctc ctgtgtatct
      481 aaaaacgctt cacaatcaat tgagtgcgat gtttaatcat gcagtacgat tttatgaatt
      541 aaagtctaac ccagcgagaa aagcaggtaa tatgggaaaa gagaaaagcg tggagatgtt
      601 attttggacg aaagaagaat accaaaaatt ttcggactcc atgatggata aagcaatatc
      661 attttatgct tttgaaattt tatattggtg tggaattcga ctaggtgagt tacttgctct
      721 tactgcttca gattttgatt ttaataaagg tacactatcc atttcgaaat cttgtcagcg
      781 tcttaagggt atggatgtga taaccgaacc aaaaactcct aaaagtaatc gtatcataca
      841 aatgccagaa tttttgggag aagaaattca agagtatatt caatctattt ataaatggga
      901 gccagatgag cgtttgtttc caataacaaa gagttacttg cacagtgaaa tgacaagagg
      961 agctaaggag caaaaaataa aacgcatacg catccatgat ttaagacatt cgcatgtatc
     1021 acttctaata gatagcggat tttcagcagt ggcaattgca gatcgcttgg gacacgaaag
     1081 tatagatgtt acgtatcgtt atgcacacct atttccaacc aaacaaatgg aaattgcaaa
     1141 tatgttagac aacttaaaag gagagtatta atatgtcagt taaaacatta gatggaaaag
     1201 gacgttggag aaataaaata gttgcattta gggtatcacc agaagaaaat gaacacttaa
     1261 ataaact
//
LOCUS       DASEAA010000313         1261 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.316, whole genome shotgun sequence.
ACCESSION   DASEAA010000313 DASEAA010000000
VERSION     DASEAA010000313.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1261)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.316"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(176..>1261)
                     /locus_tag="U0342_003018"
     CDS             complement(176..>1261)
                     /locus_tag="U0342_003018"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464596.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FtsW/RodA/SpoVE family cell cycle protein"
                     /protein_id="HEM2424335.1"
                     /translation="GLPADYSYARQVKNFIISFIFFILFALLPFKFYQNNKVLMLIVF
                     GSIGVLLLIFLVGKTVNNANSWLVLGPRSLQPGEFAKLAVIIYMSAIYAKKQSYIDDF
                     NRGVLPPIFFLAFVCFLIAIQPDTGTAFIIFLVGCCIIITSGMRLRTIMKLIGIGMGI
                     IIGLTLILFALPDSVRNEIVSPTKVARITTFMNPFEYADKEGHQLINSFYAIGSGGVS
                     GQGLGESVQKLGYLPEAHTDFIIAVVAEELGVFGVMFIILALFFIIFKTITTGLRAKD
                     PFASLMCYGIASLIAIQAFINLGGASGLIPLTGVTLPFISYGGSSLMVLSMMLGIVAN
                     ISMFTKYQRVYKADGSTRELPKKQKRR"
BASE COUNT          475 a          252 c          199 g          335 t
ORIGIN      
        1 ctgtaaaacg gtatataact tcaattatag tattaaatac catcagatgt aaattatttt
       61 ctttctaaat atttaaaaca atatcgaaaa cacgaataaa ctggctataa aacgccaaaa
      121 acatgcggta aagcaaaaaa agaaaaagct aattaattag ctttttcttc ataatttaac
      181 gtcttttttg tttctttggt aactctctcg tggaaccatc tgctttataa acacgttggt
      241 atttagtgaa cattgaaata ttcgctacga taccaagcat catcgagagc accattaagg
      301 aagatccacc ataactaata aatggcagcg ttacaccagt aagcggaatc aaaccactag
      361 ctccaccaag attaataaat gcttgaatcg caatcagact agcaatcccg tagcacatta
      421 aggaggcaaa tggatccttc gccctgagtc cggtcgtgat agttttaaag ataatgaaga
      481 acagtgccaa aataataaac atcacaccga acacacctaa ttcttctgca acaacggcaa
      541 taataaaatc ggtgtgtgct tccggcaagt aaccaagttt ttgaacgctt tcgccaagcc
      601 cttgtccaga aacaccacct gagccaatcg catagaagga attaattaac tggtgccctt
      661 ctttatccgc atactcaaaa gggttcataa aagtcgtaat acgagctact ttcgttggag
      721 aaacaatttc attcctcaca ctatccggta gtgcgaataa gatgagcgtg agtccaataa
      781 taatacccat accaatccca attaatttca taatcgttcg aagtcgcatt ccagaagtga
      841 taataataca acaaccaact aagaaaataa taaaagctgt cccagtatct ggctgaatgg
      901 caatcaagaa acatacaaat gctaaaaaga atatgggcgg taaaacacca cggttaaaat
      961 catcaatgta actttgtttc ttcgcataga tggcagacat gtaaataatt acggctaatt
     1021 tagcaaattc tcctggttga agagaacgtg gccctaaaac aagccaactg ttcgcattat
     1081 ttaccgtttt acccactaag aaaatcagta ataagacacc gatggatcca aatacaatta
     1141 acattaacac tttattattt tgataaaatt taaatggcaa aagagcaaaa agaataaaga
     1201 aaataaaact aattataaag ttctttactt gacgagcata agaataatct gccggtaagc
     1261 c
//
LOCUS       DASEAA010000314         1259 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.317, whole genome shotgun sequence.
ACCESSION   DASEAA010000314 DASEAA010000000
VERSION     DASEAA010000314.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1259)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1259)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1259
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.317"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..1186
                     /locus_tag="U0342_003019"
     CDS             <1..1186
                     /locus_tag="U0342_003019"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_009917295.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="MucBP domain-containing protein"
                     /protein_id="HEM2424336.1"
                     /translation="SQIALTPISALADTHDTNNIALLQNTNENVPYKYTSTLTFPTLT
                     NQTQEDYKLEIKLALPTGMNYTGLQVSVGGEDITNQVGTTSFDNSTNTVTFKFDKVTS
                     WDSLSKAKVKFDWKTSYSGEGGEAKIDSLVATATATSEDKAGNKSTSTGSLKPKDISA
                     PVVKADKTEVTYNLGSNVTEEQFLTDINASVTDNYDSTISLTSNFTSIVNLAVSGDYS
                     VNVQATDKAGNVSNTVNVTVHVATPAPVAGANITVNYLDSDGNKLAESDTLTGTIDSN
                     YQSTSKKISGYTLETTPKNATGTFTDTPQTVDYIYKKDTVTPTPIVDPVNPVDPVDPV
                     VNKPVIVTPNTDQVTTSNSVEKTTYNSLPKTGDTDQSTATTIFGALLLLISAPLLLFK
                     KK"
BASE COUNT          457 a          261 c          209 g          332 t
ORIGIN      
        1 tagtcaaata gcacttacac ctatttctgc acttgctgat actcacgata caaataatat
       61 tgcattacta caaaatacca atgagaatgt cccatataaa tacacatcca ctcttacatt
      121 tccaacttta acgaatcaaa cccaggaaga ctataaactg gaaataaaat tagccctacc
      181 aactggcatg aactatacgg gcttgcaggt ttctgttggt ggggaagaca ttacaaacca
      241 agttgggaca actagctttg acaattccac taacactgtt acttttaaat tcgacaaagt
      301 aacaagttgg gatagtttat ccaaagcaaa agtaaagttc gactggaaaa cttcttattc
      361 aggtgaaggc ggggaagcaa aaatcgattc tttagttgcg accgcaacag ctacaagcga
      421 agacaaagct ggtaacaaat ctacctctac tggctcttta aaaccaaaag atattagcgc
      481 accagttgtc aaagcagata aaacagaggt tacgtataat cttggaagca acgttaccga
      541 agagcaattt ttaacagaca ttaatgctag cgttactgat aattatgact ccactattag
      601 tcttacaagc aattttactt ccatagttaa tttagcagtg agtggtgatt actcggtcaa
      661 tgttcaagca accgataaag ctggcaacgt ctcaaatact gtaaatgtca ccgttcatgt
      721 agcaactccg gcacctgtag ccggagcgaa cataacggtc aactatcttg atagcgatgg
      781 aaataaactc gcagaatcag acacattgac gggaactatc gatagtaatt accaatctac
      841 aagtaaaaaa attagcgggt acactctaga aaccacacca aaaaatgcaa ctggtacttt
      901 cactgatacc ccgcaaaccg ttgattatat ttataaaaaa gataccgtta ccccaacacc
      961 tatagttgat ccggtcaatc cagttgaccc agttgaccct gtagtaaata aaccagtcat
     1021 tgtgacacca aatacggatc aagttactac tagtaattca gtagaaaaaa caacttataa
     1081 ttctttaccg aaaacgggtg atacagatca aagtacagca acaactattt tcggagcatt
     1141 gcttctttta atcagcgccc cattactttt atttaaaaag aaataactaa aatcacctcg
     1201 taaaattttt acgaggtgat ttaaaaatag tcctattaca atacaaaaag tgtaagtgt
//
LOCUS       DASEAA010000315         1252 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.318, whole genome shotgun sequence.
ACCESSION   DASEAA010000315 DASEAA010000000
VERSION     DASEAA010000315.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1252)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1252)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.318"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..374
                     /locus_tag="U0342_003020"
     CDS             <1..374
                     /locus_tag="U0342_003020"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466004.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="HAD-IA family hydrolase"
                     /protein_id="HEM2424337.1"
                     /translation="RALYEEDYKLGIVSTKMYDTIMRGLKVTGLDKFFQVVIGLDQVS
                     NAKPDPEGIEMALSLLNATKEEAIMIGDNYHDIEAGKNAETLTAGVAWAIKGPEHLAQ
                     FQPDFMLEKMSDLLAIVRDEE"
     gene            378..875
                     /locus_tag="U0342_003021"
     CDS             378..875
                     /locus_tag="U0342_003021"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="acyltransferase"
                     /protein_id="HEM2424338.1"
                     /translation="MRRLDRFKAPDDTVNTLFQVYKTISFWKVLKNTLVIELGRFFPW
                     MGGKRAIYRACLGMEIGEKTAIAYKVMPDLFFPEKIMIGENSIIGYHTTILTHEYLLS
                     EYRVGEVVIGRDVMVGANVTILPGTVIGDGAVIAAGAVVSVDVPAGSFAYGNPLIIKE
                     KATLT"
     gene            960..>1252
                     /locus_tag="U0342_003022"
     CDS             960..>1252
                     /locus_tag="U0342_003022"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="tetratricopeptide repeat protein"
                     /protein_id="HEM2424339.1"
                     /translation="MEKDKKTPAKIYPFYPNGQFYFERGVEAFRDQRIKEAIRYLVRA
                     SELEPGEAVILCQLAICYTEIGQFHKSNQLLREVLEQRNGNMEYCYYFIANNFA"
BASE COUNT          377 a          190 c          305 g          380 t
ORIGIN      
        1 ttcgtgcttt atatgaagaa gattataaac ttggaattgt atcgacgaaa atgtatgata
       61 cgattatgcg aggtctcaag gtaactggct tggataaatt tttccaagtg gtgattgggt
      121 tagatcaagt gtctaatgct aaaccagatc ctgaaggtat tgagatggct ctttctttat
      181 taaatgcgac aaaagaagaa gcgattatga ttggcgataa ttatcatgat attgaagctg
      241 gaaaaaatgc ggaaacccta accgcgggtg tagcttgggc gattaaagga ccagaacatt
      301 tggcgcagtt tcagccagat ttcatgttag aaaaaatgag cgatttactc gcaattgtta
      361 gggacgagga atagaatttg aggcggctgg ataggtttaa ggcacccgat gatacagtca
      421 acaccctttt tcaagtgtat aaaacgattt ctttttggaa ggttttgaag aatacgctag
      481 taatagaact tggtcgtttt tttccatgga tgggcggtaa gcgtgcaatt tatcgcgcat
      541 gtcttggaat ggaaattggc gagaagactg ccattgccta taaagttatg ccggatttat
      601 tttttccgga aaagattatg attggcgaaa actcaattat tggttatcac acaactatct
      661 tgacgcatga atatttactt tcggagtacc gtgttgggga agttgtgatt ggtcgggatg
      721 tgatggttgg cgcgaatgtc accattcttc cgggcacagt aattggagac ggggctgtga
      781 ttgctgctgg ggcggttgtc tcggtggatg tcccggctgg tagttttgct tatggaaatc
      841 cattaataat aaaagaaaaa gctactctga cgtaaaagtc aaagtagctt tttttgtcgc
      901 ccaaagtcat aaattctatg ttatactcat taggataaag gtatcttgga ggtggaaaaa
      961 tggaaaaaga caaaaaaaca cccgcaaaaa tctatccatt ttatccaaat ggtcagtttt
     1021 attttgaacg cggtgtcgaa gcgtttcgtg atcaaagaat taaagaagca atcaggtatt
     1081 tagtgcgggc atccgaactg gagccaggag aagctgttat tctttgtcag ctggcgatat
     1141 gttatacaga aattggtcaa ttccataaat cgaatcagct acttagagaa gttttagaac
     1201 agcgtaatgg gaacatggaa tactgttatt attttattgc taataatttt gc
//
LOCUS       DASEAA010000316         1244 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.319, whole genome shotgun sequence.
ACCESSION   DASEAA010000316 DASEAA010000000
VERSION     DASEAA010000316.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1244)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1244)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1244
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.319"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            66..896
                     /locus_tag="U0342_003023"
     CDS             66..896
                     /locus_tag="U0342_003023"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_016128138.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParA family protein"
                     /protein_id="HEM2424340.1"
                     /translation="MKQKNKAIVLTVGNYKGGAGKTSNTVLIAYELAKKGLKTLVIDL
                     DPQSNATKCLLLTKSGLYPDEVVTIDKTLMTGIAEKKIDGLEVQIMDNLFLLPSYIDF
                     EDFPKFLYKTTNTKEEEDYYIKNIFDPLEVKYDIILIDVPPMSKAVTRNAVICSDYVL
                     ISLQTHERSLSGAENYVQELNSLNLEYDLDLEVVGVLPVLHKNNGSVDKYIMKTATET
                     FGKENLFDIVIPQMERIKRFDVNGITEKDRYDEKVISFFNNVSDELLERIHYFETQEK
                     "
     gene            911..>1244
                     /locus_tag="U0342_003024"
     CDS             911..>1244
                     /locus_tag="U0342_003024"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726389.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424341.1"
                     /translation="MTTNKGRGLLNTAKRIPGNFQPSQAYNEKENSTKEKEISDKKAE
                     AEKIKNQKFKNQEGTIKTSIQTKEELQALKNITKTKFDYEIIDLLIDTYVNNELTPEQ
                     RRKFKAMTE"
BASE COUNT          526 a          178 c          200 g          340 t
ORIGIN      
        1 atagaaatta aggaggaatc caattgtcac tttcaaaaaa ggttagaaaa gacattatct
       61 cgtccattaa acaaaaaaac aaagcaattg tactaactgt tgggaactac aaaggtgggg
      121 caggaaaaac aagcaataca gtactaatcg cctatgaact cgcaaaaaag ggactaaaaa
      181 ctttggtgat tgatttagac cctcaaagca atgccacaaa atgtttgctt ttaacaaaat
      241 ctggactata tcctgatgaa gtagttacta ttgataaaac actaatgaca ggtatagccg
      301 aaaaaaaaat cgatggctta gaagttcaaa tcatggataa cttattttta ttaccgtctt
      361 atatcgactt tgaagatttc cccaaatttt tatataagac tacaaataca aaagaagaag
      421 aagactatta tattaaaaat atatttgatc ctttagaagt taaatatgac atcattttaa
      481 tagatgttcc accaatgtct aaagccgtta ctagaaatgc agttatatgt tcagactatg
      541 ttttaatctc tcttcaaact cacgagcgtt ctttaagtgg agctgaaaat tatgtacaag
      601 aattgaatag tctaaacttg gaatatgacc tagatcttga agtcgtaggg gtactgccag
      661 tattacataa aaacaatgga agtgttgata aatatataat gaaaaccgcc actgaaacct
      721 ttggtaaaga aaatttattt gatatagtaa ttccgcaaat ggaaagaatt aaaagatttg
      781 atgtaaatgg tataactgaa aaagatagat atgatgagaa agttatttca ttctttaata
      841 atgtcagtga tgaattgtta gaacgaatcc attactttga aactcaagaa aaataagaag
      901 gtgattattt atgacaacaa ataaaggacg aggtttgtta aacacagcga aaagaatccc
      961 tggtaatttc caaccctctc aggcttacaa tgaaaaggaa aattctacaa aagaaaaaga
     1021 aataagtgat aaaaaggctg aagctgaaaa aattaaaaat caaaaattta aaaatcaaga
     1081 aggtaccata aaaacttcca tccaaacaaa agaagaactg caagctctaa agaatataac
     1141 caagacaaaa ttcgattatg aaataattga tttacttatt gacacttacg tcaataatga
     1201 attaaccccc gaacaaagga gaaaatttaa agcaatgaca gaat
//
LOCUS       DASEAA010000317         1230 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.320, whole genome shotgun sequence.
ACCESSION   DASEAA010000317 DASEAA010000000
VERSION     DASEAA010000317.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1230)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.320"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            693..>1230
                     /locus_tag="U0342_003025"
     CDS             693..>1230
                     /locus_tag="U0342_003025"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724378.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424342.1"
                     /translation="MEMKKLIKCTAPIFIATLIILPVSPSISALANETSEISEGINAT
                     EKTIETEELVVEEISNDEYQVLDKETNETTSIEFSKNHMQSTITNPDGTIDTMIKKDN
                     LIYLNGEVIGEEVKEESRQLLKASAYKYVTTFKTKMSLKKTSASIAVSLAGLLGGPVG
                     VFSTVAGMLLTLKSYAPSK"
BASE COUNT          467 a          164 c          214 g          385 t
ORIGIN      
        1 aaaagaaagt ttagataagt gccaggaaag aagaaaaaat aaaacctctg aaacagctat
       61 ttaaagcttc tttcagaggt ttatagtaat taatagaaag tgacagaaga gtaatttttc
      121 gtccccttca gccggacttg ggtatttctc catgttgata tccaatgttt cgaggatgtt
      181 tgaatgtttt tgactataaa atcaatttca acagatttta ttttagcata aaattaggaa
      241 aaagagaagc agtggaatct ttcttttctt gcgtgacatg agtataaaaa ttagagtatg
      301 agattattat tacaagcata tttattaaga atcaataatt tttaggttta atgaataatt
      361 atactgtttt attcacttgg attttatgga atatgataaa aaattaaata aataaggatt
      421 tttacataaa aaacaactta tgcatcagtt aaatatgtat tttttatgac acttaggtag
      481 caggctgcat aaataatgaa taacaagcta aagtgtggct ttttttgcaa aaaaaatcac
      541 aaagttacac aatatgtgta agaataagta tcaataaccc tcacttttgg tcgttcacga
      601 caagaatcgg gcatttcatt acatttttgg ttatacattg gcttttcatg atacattaca
      661 tgtgtaagac atataaagga gatggtacat aaatggaaat gaaaaaactt attaaatgca
      721 ctgcaccaat ctttattgct acgctcatta ttttgcctgt ttctccgtct atttcagcat
      781 tggcgaatga gacctcagag attagcgaag ggattaatgc aacagaaaaa acaattgaaa
      841 cagaagagct tgtcgtagaa gaaattagta atgatgaata tcaagtactg gataaagaga
      901 caaatgaaac aacttcaatt gaattttcaa aaaatcatat gcaatctact attacaaatc
      961 cagatggcac tatagacaca atgattaaaa aggataactt aatttaccta aatggtgaag
     1021 ttataggtga agaggtaaaa gaagaatcga gacaattatt aaaagcctct gcttataaat
     1081 atgttacgac gtttaaaaca aaaatgtcac taaagaaaac aagtgcatct attgcagtgt
     1141 cattagctgg tttgcttgga ggacccgttg gagtatttag tacagtagca ggtatgctac
     1201 taacattgaa atcttatgcc ccgagtaaag
//
LOCUS       DASEAA010000318         1221 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.321, whole genome shotgun sequence.
ACCESSION   DASEAA010000318 DASEAA010000000
VERSION     DASEAA010000318.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1221)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1221)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1221
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.321"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..851
                     /locus_tag="U0342_003026"
     CDS             <1..851
                     /locus_tag="U0342_003026"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724186.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="substrate-binding domain-containing protein"
                     /protein_id="HEM2424343.1"
                     /translation="PNNIAQQFRGQGTKMIGVVISFITNPFFAYLVDAIERYLSHRGY
                     QVVMLQTLENPAKELQFIEMLQKKQLDGLIMANLENDTEEIKSLVESGKIVLCNRYLG
                     NENLTIINIDETKAAYQATNYLIKCGYKRLAYCTGGIKNKNDYRFKGFMQAVTENGLS
                     FDESLYFEKLLTIKDGEELLVNILEEKSTLPDAIFSNGDTVAAGILYAAKKYGIAVPE
                     ELGIIGFDNQPIAEVLNPALTTIEQPIKELGEYSAQVLLANLQGTSVPVAPDLETKLI
                     IRETTK"
     gene            989..>1221
                     /locus_tag="U0342_003027"
     CDS             989..>1221
                     /locus_tag="U0342_003027"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003728074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="sugar ABC transporter substrate-binding protein"
                     /protein_id="HEM2424344.1"
                     /translation="MKKLLLSISIIVGLSLLASCGVEKEYKPDIKVNEKNVSLKVWVD
                     LNQGDFYRKVVDDFKKEHPDKNYDITVIESESGR"
BASE COUNT          421 a          162 c          253 g          385 t
ORIGIN      
        1 atcctaataa tattgctcaa caatttcgag ggcaggggac taagatgatt ggtgttgtga
       61 tttcctttat aaccaatcct ttttttgcgt accttgttga tgcgattgaa cgctatctat
      121 ctcacagagg gtatcaggtt gtcatgttgc aaactttaga aaatcctgca aaagaattac
      181 aatttatcga gatgttacaa aagaaacagc tagatggatt gattatggct aacttagaaa
      241 atgatacaga agaaattaaa tcactcgttg aaagtggcaa aattgttctt tgtaatcgtt
      301 atctgggaaa tgaaaatttg acgattatta acattgatga aacgaaagcg gcttatcaag
      361 caacgaatta tttaataaag tgcggttata aacgccttgc ctactgtact ggtggtatta
      421 aaaataaaaa tgattaccgt tttaaaggat tcatgcaagc tgtaacagaa aatggacttt
      481 cttttgatga atcattgtat tttgagaagt tattaaccat taaagatggc gaagagcttc
      541 tagttaatat tttagaagag aaatctactc tgccggacgc aattttttca aatggtgata
      601 cggttgctgc tgggatatta tatgctgcaa aaaaatacgg gatagcagtg ccagaggagc
      661 taggaatcat aggttttgat aatcaaccta tagcggaagt tctgaatccg gcgttgacaa
      721 ctattgaaca accaattaaa gaacttggtg aatattcggc gcaagttcta ttggctaatt
      781 tacaaggaac gagtgtgccg gtagcgccag accttgaaac aaaactaata ataagagaga
      841 ctaccaagta aattctctct tattattttt atgaaaacgg ttgacatttt ataagataat
      901 tgatattatt tttacgatat atgaaaccgc ttaagctaaa atgacaaccg gttgtcattt
      961 taagtgaaga taaggagaat gttcaagtat gaagaagtta cttttgtcca tcagtattat
     1021 tgtcggttta agtttgttgg ctagttgtgg tgtagaaaag gaatacaagc cagatataaa
     1081 agtaaacgag aaaaatgttt ctttaaaagt ttgggtggat ttaaatcagg gtgattttta
     1141 taggaaagtg gtagatgatt ttaaaaaaga acatcctgat aaaaattatg atattacggt
     1201 tattgaatct gaatctgggc g
//
LOCUS       DASEAA010000319         1136 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.322, whole genome shotgun sequence.
ACCESSION   DASEAA010000319 DASEAA010000000
VERSION     DASEAA010000319.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1136)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.322"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            707..1060
                     /locus_tag="U0342_003028"
     CDS             707..1060
                     /locus_tag="U0342_003028"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724909.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424345.1"
                     /translation="MEKIYRGNGFAVIERNGEFQITFPKGVTGEPVFFPITKALMEKA
                     FKSSDDAYEVMIYAETGLWPEKNTEEEENERIRTFVRKFPELLIKVPDNQDLFTEEEL
                     KELLPLGKKKLSEEE"
BASE COUNT          433 a          130 c          236 g          337 t
ORIGIN      
        1 cttttatttt ggaataatga ttaaaatgag ccgatttaag acgctttgtc ctagaccgga
       61 acttaagaat actattttta acgagataga tgcaaagaac tgtctgtcaa gatttctgga
      121 ttctaacttg ttcgagatag aaaattacaa gaaagatgcc atttgtctta ttaacgaaaa
      181 aaatacttat gtagtgggtt attgtgatat agatatgatt tttcatacaa taagtaatga
      241 taactctagt ttgacaatgg gagctaaagt tctagctaat ttcacctgga aatatatgta
      301 ttttaaacaa atgattaaag aatatgacat agaattagat cagaatcaag tggattataa
      361 ggctatttta cgtaatttgt tgaaccttaa aaattagagc ttaagtaaag gtgagtctaa
      421 tgagcagtat acagataaag ctatatctgc tgctgacgaa aatcctagaa ttttggaaga
      481 attattagga cttgatccta tgagtttagg agaaaaccct gtgttagtag atataaaaaa
      541 ccaccaatat gagagtgcct agtggtaatg aatcaggagc ttggcaaggt ttttgggaac
      601 catgagggtt cgcaagtggt ggaatatctg aagctgttgt aaatgcaatt aaaagtgatg
      661 aatatattgt tataaatata tttaaatgct tgggggataa attgtaatgg aaaaaattta
      721 tagaggaaat ggattcgcag taatagaaag aaatggagag tttcaaataa ctttccctaa
      781 aggagtaact ggtgaaccag tattttttcc cattacaaaa gcgctgatgg aaaaagcgtt
      841 caagtcatca gacgatgcct atgaagtaat gatatatgct gaaacaggtt tatggccaga
      901 gaaaaataca gaagaagagg agaatgaacg aatcagaaca tttgtaagaa aattcccaga
      961 gttattgata aaagttcctg ataatcaaga tttatttaca gaagaggaat tgaaagaatt
     1021 gctgccttta ggaaagaaaa aattatcaga agaagagtaa ttttataaaa taaaaagata
     1081 ctttatcttc gggttggcat tggaaagcag agctatgaat agtaagagca agctca
//
LOCUS       DASEAA010000320         1121 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.323, whole genome shotgun sequence.
ACCESSION   DASEAA010000320 DASEAA010000000
VERSION     DASEAA010000320.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1121)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.323"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..>1121)
                     /locus_tag="U0342_003029"
     CDS             complement(<1..>1121)
                     /locus_tag="U0342_003029"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731506.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="chromosome partitioning protein ParB"
                     /protein_id="HEM2424346.1"
                     /translation="PENLTVSVVNLDINQEKALNIALNKIEGGWSTDKLGELLKSIND
                     EEMLNLTGFSAIEIDELIKEFELPPATVDKVKENPLDSNLFESFLFPPFSYLDSKTKR
                     WRDRKDQWKNLGIRSELGREGNLTFASSLRSSSLTGTSIFDPVLCELAYRWFTPGESA
                     KIYDPFAGGSVRGIVAKVLGHEYTGIDLRKEQVEANHINAKEIGLDGINWITDNSLNA
                     DKYIEDNAMDLLFTCPPYFDLEVYSDNKEDISNMEYEEFIKVYSEILDKGANKLKDNR
                     FAIVVISDVRDKNGFYRDLTGLTKSVFEKNGIYFYNDLILLNSLGSGALRARRNMRNR
                     KLVRIHQNVLVFYKGNPDEIQEHFPILEVLEDNLEEALES"
BASE COUNT          333 a          239 c          153 g          396 t
ORIGIN      
        1 gattcaagcg cttcttctaa attatcttcc agtacctcta aaatggggaa atgttcttgt
       61 atctcatcag gatttccttt ataaaatact aatacattct ggtgaatacg gactaacttc
      121 ctgttacgca tatttctgcg agctcttaat gctcctgaac ctagcgagtt taacaaaatc
      181 aagtcattat agaagtaaat accattcttc tcaaataccg atttagtaag gcctgttaaa
      241 tccctataaa aaccattttt atctcgtaca tctgaaataa ccacaatggc aaaccgatta
      301 tcttttaatt tattcgcacc cttatctaat atctcggaat aaactttaat aaattcctcg
      361 tattccatgt tgctaatgtc ttctttatta tctgaatata cttctaaatc aaagtatggt
      421 gggcatgtaa ataataagtc catcgcgtta tcttcaatat atttatccgc gtttaagcta
      481 ttatcagtaa tccaattaat gccgtctaat ccgatttctt tagcattaat gtggttagct
      541 tctacttgtt cttttcttaa atcaattcca gtgtactcat gcccaagaac tttcgctaca
      601 atcccccgga cagaaccacc ggcgaatgga tcgtatatct ttgcagattc tccaggagta
      661 aaccatctat aggccagttc gcaaagcacg gggtcgaaaa tgctcgttcc tgtcaaacta
      721 gatgaacgca aactagatgc aaacgtaaga ttaccttctc tccctaactc acttctaata
      781 cctaaatttt tccattggtc cttcctatcc ctccacctct ttgtttttga atctaaatac
      841 gaaaaaggag gaaacaaaaa agactcgaac agattcgagt ctaacgggtt ttcttttact
      901 ttatctactg tagctggagg taattcgaat tctttaatta attcatctat ttcaattgct
      961 gagaatcctg ttaaatttag catttcttca tcattaatgc tttttagtaa ttcgcctaat
     1021 ttatcagtac tccatccacc ttctatttta tttaaagcaa tattcaatgc tttctcttga
     1081 tttatatcta ggttaactac tgatacagtt aagttttccg g
//
LOCUS       DASEAA010000321         1120 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.324, whole genome shotgun sequence.
ACCESSION   DASEAA010000321 DASEAA010000000
VERSION     DASEAA010000321.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1120)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1120)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1120
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.324"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            45..776
                     /locus_tag="U0342_003030"
     CDS             45..776
                     /locus_tag="U0342_003030"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464919.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="SDR family oxidoreductase"
                     /protein_id="HEM2424347.1"
                     /translation="MDKEIKYAFVTGASGEIGQAICLSLAKAGWNLYLHYYQNKQAVE
                     KLLPQLLAEDVDVILIQADFDDLTSLTEMEKQVFQLDAFIHAAGHAHYGLFQDTTDIN
                     ITELWNVHMYMPMRLIRTFMPKLMKSSQGRIIFISSIWGEVGASMEVAYSTVKGAQIA
                     FCRALSQEVGLSGITVNAVTPGVVETKMMDQFSDEEKEILRQEIPLNRFAQPEEIAEI
                     VAFLTSKKASYITGEVLRLNGGWLM"
     gene            827..>1120
                     /locus_tag="U0342_003031"
     CDS             827..>1120
                     /locus_tag="U0342_003031"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464920.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2424348.1"
                     /translation="MTELGDKLKQARREKGLSLDDLQQVTKIQKRYLVAIEEGNYAVM
                     PGKFYARAFIKQYAEAVGLDSATLFDEFESEVPETPQQEVVNNEPTRVQSKRNP"
BASE COUNT          395 a          162 c          250 g          313 t
ORIGIN      
        1 tcatgctatc ataaaagaaa tagactggaa agggttgcct ttttttggat aaagagataa
       61 aatatgcttt tgtaacaggg gctagcgggg aaataggtca agcaatttgt ttgtcacttg
      121 cgaaagctgg ttggaacttg tatcttcact attatcaaaa taaacaagca gtggaaaaat
      181 tactgccaca attactagca gaagatgtag atgttatact gattcaagct gattttgatg
      241 atttaacaag tttaacagag atggagaagc aagtttttca gttagatgcc tttattcatg
      301 cagcagggca cgcccattat ggtttattcc aggatactac agatataaat attactgaat
      361 tatggaatgt gcatatgtat atgccaatgc gattaattcg cacttttatg cccaaattaa
      421 tgaaaagtag ccaaggaaga attattttca ttagttctat atggggagaa gttggtgcat
      481 caatggaagt agcgtattca actgtaaaag gtgcgcaaat agccttttgc cgtgcgctaa
      541 gtcaagaggt gggactttct ggaataacag ttaatgcagt tacaccaggg gttgtagaaa
      601 caaaaatgat ggatcagttt tcggacgagg agaaagaaat tcttcgtcaa gaaatccctt
      661 taaatcgttt tgcccaacca gaagaaattg cagaaattgt agcatttttg acaagtaaaa
      721 aagcaagcta tatcactgga gaagttttgc gcttaaatgg cggttggctt atgtaatttt
      781 agtaaaaaaa tggaaatttg aaattagtaa tggtaggtgt ttaattttga cagaactcgg
      841 tgataaactg aaacaagcta gacgtgaaaa aggactcagt ttagacgact tgcaacaagt
      901 aacgaaaatt caaaaacgtt atttggtagc gattgaagaa ggaaattatg ctgtaatgcc
      961 tggcaaattt tatgcaaggg catttattaa acaatacgca gaagcagttg ggctagatag
     1021 cgcaacactt ttcgacgagt ttgaaagcga agttccggaa acaccgcaac aagaagtagt
     1081 aaataatgag ccaacacggg tacaaagtaa aagaaatccg
//
LOCUS       DASEAA010000322         1115 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.325, whole genome shotgun sequence.
ACCESSION   DASEAA010000322 DASEAA010000000
VERSION     DASEAA010000322.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1115)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.325"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..378)
                     /locus_tag="U0342_003032"
     CDS             complement(<1..378)
                     /locus_tag="U0342_003032"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463962.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="internalin N-terminal domain-containing protein"
                     /protein_id="HEM2424349.1"
                     /translation="MRRKRYVWLKSILVAILVFGSGVWINTSNGTNAQAATITQDTPI
                     NQIFTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGLEYLNNLTQ
                     INFSNNQLTDITPLKDLTKLVDIL"
BASE COUNT          307 a          225 c          157 g          426 t
ORIGIN      
        1 caaaatatca actaacttag ttaaatcttt aagtggcgtt atatccgtaa gttgattatt
       61 gctgaaattt atttgtgtta aattgttcaa gtattccaat ccatcgatag attttatccc
      121 taatctatcc gcctgaagcg tcgtaacttg gtctagatct gtttgcgaga ccgtgtctgt
      181 tacattcgtt tttcctaaga ccgtcttcat tttttccgct agagctgtat ctgtaaaaat
      241 ctgattaata ggagtatctt gtgtaattgt agctgcctga gcatttgtcc cgttactcgt
      301 gttaatccat actccactgc caaatactaa tattgctact agtatacttt tcaaccatac
      361 atatcgtttt cttctcacta tatacactcc tttttcaata gttagaaaca atatcaggtt
      421 tcgttgtata ggattttctc ctgcatccga aaaatcatgt ctgcttactt tattaaacta
      481 tgcgccccat gaattgttcc tatggtattc agtagttaat ctgtctacgg agctgcttag
      541 tgatatcttt catctcgttc gttccagcac attttcccta tatataatat ttttatgtat
      601 ttcactatcg aagcttaata ggaattcaac catgcaaatc atgttatgtt gataccacac
      661 gtgtcattcc accttttaaa atggtctatt attgacgaac tcaagccccg cactcttccc
      721 gccaaaactc tctttttttc acttcttcta tataatcacc cctttcaaag cccattaaat
      781 aataatagct atttttctcc aaaaaagaat taacttatgt tatcctctac cctttatgtt
      841 caaaataaca cataaggatg tcgagatttt tggtgaaatg tatacaaaaa aagataacac
      901 ggtgtgattg tgttatcttt ttactttgta tgcgttgctg gttgatagtt ctttttgttt
      961 ctgaactgag aattgatttc ttcgagttta atttttatat cacgaatagg aaaatcatat
     1021 tccttccgta accacttggc ataatcttta aaagccgttt taattctagc tgaactgatt
     1081 cttctatttt caaacgaagg tcttttctca ccagc
//
LOCUS       DASEAA010000323         1114 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.326, whole genome shotgun sequence.
ACCESSION   DASEAA010000323 DASEAA010000000
VERSION     DASEAA010000323.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1114)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.326"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>1114
                     /locus_tag="U0342_003033"
     rRNA            <1..>1114
                     /locus_tag="U0342_003033"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          318 a          224 c          343 g          229 t
ORIGIN      
        1 cggcggaaca cgtgaaattc cgtcggaatc cgggaggacc atctcccaag gctaaatact
       61 ccctagtgac cgatagtgaa ccagtaccgt gagggaaagg tgaaaagcac cccggaaggg
      121 gagtgaaaca gttcctgaaa ccgtgtgcct acaagtagtt agagcccgtt aatgggtgat
      181 agcgtgcctt ttgtagaatg aaccggcgag ttacgatttg ttgcaaggtt aagcggaaaa
      241 agcggagccg tagcgaaagc gagtctgaat agggcgcata agtaacaggt cgtagacccg
      301 aaaccaggtg atctacccat gtccaggatg aaggtaaggt aatacttact ggaggtccga
      361 acccacgcac gttgaaaagt gcggggatga ggtgtgggta gcggagaaat tccaatcgaa
      421 cttggagata gctggttctc tccgaaatag ctttagggct agcctcgagg taaagagtca
      481 tggaggtaga gcactgtttg gactaggggc ccttctcggg ttaccgaatt cagataaact
      541 ccgaatgcca tgtacttata ctcgggagtc agactgcgag tgataagatc cgtagtcgaa
      601 agggaaacag cccagaccac cagttaaggt ccccaaatat atgttaagtg gaaaaggatg
      661 tggggttgct tagacaacca ggatgttggc ttagaagcag ccaccattga aagagtgcgt
      721 aatagctcac tggtcgagtg accccgcgcc gaaaatgtac cggggctaaa catattaccg
      781 aaactgtgga tgaacctctt tagaggttcg tggtaggaga gcgttctaag ggcggtgaag
      841 tcagaccgga aggactggtg gagcgcttag aagtgagaat gccggtatga gtagcgaaag
      901 aagggtgaga atcccttcca ccgaatatct aaggtttcct gaggaaggct cgtccgctca
      961 gggttagtcg ggacctaagc cgaggccgat aggcgtaggc gatggacaac aggtagagat
     1021 tcctgtacca gtgctaattg tttaaccgat ggggtgacac agaaggatag ggaatcgcac
     1081 gaatggaaat gtgcgtccaa gcagtgagtg tgag
//
LOCUS       DASEAA010000324         1112 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.327, whole genome shotgun sequence.
ACCESSION   DASEAA010000324 DASEAA010000000
VERSION     DASEAA010000324.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1112)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.327"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..556)
                     /locus_tag="U0342_003034"
     CDS             complement(<1..556)
                     /locus_tag="U0342_003034"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424350.1"
                     /translation="MNKNKKMSLKVFMLIIVSILLLNVCVPRLANAEHIKVDPLNPNI
                     NEKNKLVIEKNPKKLGYEVNIFGNSRMKIIDKDKDRKTANAYKFEDLEKYKYSRFEDN
                     YSSKMIEITSPTTTDKVAVTYNYVGKYNNSPVGATVTYTDFTYAKVPSANYTQGILEL
                     SESLFSGYWYCNLSSMNVNYQFFDV"
     gene            complement(674..>1112)
                     /locus_tag="U0342_003035"
     CDS             complement(674..>1112)
                     /locus_tag="U0342_003035"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424351.1"
                     /translation="LRIYFEQQDRIIKLAHNNSYSNKTIISFNLEEVLHAGDAIFAVH
                     DEWKDYLIEVEEKSKIVEDYTESPPGKFEYFCWEKTFKYKLIGLKKTYKKEIIILPKH
                     KYFELISELKMKYPAFEYKTDETHVIAIELDKRFLTTSRETPF"
BASE COUNT          349 a          186 c          132 g          445 t
ORIGIN      
        1 tgacatcaaa aaattgataa tttacattca tagatgatag attacaatac caatatccgc
       61 tgaatagaga ctcactcaat tctaaaatac cctgagtata atttgcggaa ggtacttttg
      121 cataggtaaa gtccgtataa gtaaccgttg ctccaacagg actattgttg tatttgccaa
      181 cataattata agtgacagca accttatcag tagttgtcgg gcttgtaatt tctatcattt
      241 tgctagaata attatcttcg aagcgactat atttgtattt ttccaggtct tcaaacttat
      301 atgcgttagc agttttacga tctttatctt tatcaataat tttcatacga ctatttccaa
      361 atatgttaac ttcataccct aattttttag ggtttttttc aataaccagt ttgtttttct
      421 cgtttatatt tggatttaat ggatctactt ttatatgctc tgcattagct aaacgaggca
      481 cacatacatt taataataaa atagatacaa taatcagcat aaaaacctta agggacattt
      541 tcttgttttt attcatattt tcctcctcct ttactattat ttactgttct ttttcgttaa
      601 cttacttcaa tttaatcacc ccttttaaaa atttttattt tctaacctaa ttaatgaaat
      661 aaaaaaaaca cctttaaaaa ggtgtttccc ttgatgtagt tagaaatctt ttatctaatt
      721 caattgcaat tacatgggtt tcatcggttt tatactcaaa tgcaggatat ttcattttta
      781 attcagagat aagttcgaaa tacttgtgtt ttggtaatat tattatctct tttttataag
      841 ttttttttaa ccctattaat ttatatttaa aagttttttc ccaacagaaa tattcaaact
      901 ttccaggcgg actctcagta taatcctcga caattttaga tttctcctca acttctatta
      961 agtaatcttt ccattcatca tgaacagcaa atattgcatc ccctgcatgt aaaacttctt
     1021 ctaaattaaa tgaaatgata gttttattgg aataactgtt attatgagct agctttatta
     1081 ttctgtcctg ctgttcaaaa tatatccgta aa
//
LOCUS       DASEAA010000325         1100 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.328, whole genome shotgun sequence.
ACCESSION   DASEAA010000325 DASEAA010000000
VERSION     DASEAA010000325.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1100)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.328"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..575)
                     /locus_tag="U0342_003036"
     CDS             complement(<1..575)
                     /locus_tag="U0342_003036"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464176.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="GntR family transcriptional regulator"
                     /protein_id="HEM2424352.1"
                     /translation="MEKQTYEKLAYYTIKEKILSGKLHVGQHISEAGIAKELSISRTP
                     VRKAIAVLVSEELIEYELNRGAIVIESSMSAGRFIELLEMAEILVVQTIEKCKNKNLT
                     YKPEQGNALLEEMREIQKEEDVEAYLSLLSKWLLQFVAQLANSYAEDIVRKMKRDFFN
                     KAQKDIKMIPVLLEEETMETLEQLTYYMVEK"
     gene            complement(599..>1100)
                     /locus_tag="U0342_003037"
     CDS             complement(599..>1100)
                     /locus_tag="U0342_003037"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464175.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="magnesium transporter CorA family protein"
                     /protein_id="HEM2424353.1"
                     /translation="LNQIIKQTNNLEIQIKQSMKNEQLYAFMAVQKSLVFFATALQSN
                     KAILDKMEDVEHFMQQEDNHDLLRDVIIENKQAIAMTDTYTQIISGMSDVFSSVISNN
                     LNIVMKFLTSFTIILSLPTIVASIYGMNIKLPFMHNEHAFALILLFTLLITTGVTVIF
                     WRRKYF"
BASE COUNT          326 a          213 c          149 g          412 t
ORIGIN      
        1 ttcttttcta ccatgtagta agttaactgt tctaacgttt ccattgtttc ttcttccaag
       61 agcacaggaa tcattttaat atctttttgc gctttattaa agaaatctcg cttcattttc
      121 ctaacaatat cttcagcata actattagct aactgcgcaa caaattgcaa caaccatttg
      181 ctaagtaacg acagataagc ctccacatct tcttcttttt gaatttcgcg catttcctct
      241 aatagcgcat taccttgctc tggtttatag gttaaatttt tatttttaca tttttcaatc
      301 gtttgtacga caaggatttc ggccatttct aataattcaa taaaacgtcc tgcactcatg
      361 ctgctttcaa tcacaattgc cccccggttc agctcgtatt cgattaactc ttcggatact
      421 aaaaccgcaa ttgcttttct gactggcgtt cgactaatag ataattcttt tgcaatacca
      481 gcttctgaaa tatgttgacc tacatgaagc tttccactga gaattttttc tttgattgta
      541 taatatgcta atttttcata tgtttgtttt tccatgctca tccctcgttt tctatatatt
      601 aaaagtattt tctacgccaa aaaatgacag ttactcccgt tgtaattaaa agcgtaaata
      661 aaagaattaa tgcaaatgcg tgctcattat gcatgaatgg tagcttaata ttcatcccat
      721 aaatactagc cacaatcgtg ggtaatgaca aaataatggt aaatgatgtt aaaaatttca
      781 tcacgatatt taaattgttc gaaataaccg aagaaaatac atccgacatc ccgctaatta
      841 tttgggtata tgtatccgtc attgcaattg cttgcttatt ttcaataata acatctctga
      901 gcaaatcatg attatcctct tgctgcataa aatgttctac atcttccatt ttatcgagaa
      961 ttgctttatt cgattgaagg gccgttgcaa aaaatactaa acttttctga actgccataa
     1021 aagcatacag ttgctcattt ttcatcgatt gtttaatctg tatttctaaa ttatttgttt
     1081 gtttaatgat ttgatttaag
//
LOCUS       DASEAA010000326         1040 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.329, whole genome shotgun sequence.
ACCESSION   DASEAA010000326 DASEAA010000000
VERSION     DASEAA010000326.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.329"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            108..599
                     /locus_tag="U0342_003038"
     CDS             108..599
                     /locus_tag="U0342_003038"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731218.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424354.1"
                     /translation="MNKTSYELKQEFPELNFVINNNLPTKLFGLIQNKVVHLHPDLSE
                     NELRCTIIEEAMHWKYTAGDITKFNNVENIKQEKFARRKAHEYLVNIQSLALCYDLGY
                     RTYYEAATFLNVTEKFLIEAVENYREKYGLMYNNGNYIIHFGSTIQVFQEDNSFYPYD
                     YGC"
     gene            622..840
                     /locus_tag="U0342_003039"
     CDS             622..840
                     /locus_tag="U0342_003039"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727739.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="zinc-ribbon domain-containing protein"
                     /protein_id="HEM2424355.1"
                     /translation="MYCPKCGHALDNHENQCPNCLTPIIYQSNNNGKAQKAGEIMEES
                     GKLMSGCGCLMTLLITIPVIVILIIMFL"
BASE COUNT          398 a          132 c          182 g          328 t
ORIGIN      
        1 gacaatgatt tgacggaaga agaacgaata gagatagaaa aatatttaaa atttatcaga
       61 tcacaaaaag agtagttgcc taaaaattaa cattaggggg ctaattgatg aataaaacaa
      121 gttatgaatt aaagcaagag tttccagaat tgaattttgt tataaataac aacttaccaa
      181 caaaactttt cggacttata cagaataaag tagtacatct tcatcctgat ttgtcagaaa
      241 atgaacttag atgtactata atagaagaag caatgcactg gaaatatacc gctggagata
      301 taacaaaatt taataatgta gaaaatatca agcaggagaa atttgcgcgt cgtaaagcgc
      361 atgaatattt agtaaatata caatcactcg ctttatgcta cgatcttggc tacagaacat
      421 attatgaagc tgctactttt ttaaatgtta ctgaaaaatt tttgattgaa gcagtagaga
      481 attatagaga aaaatatgga ctaatgtata ataatggtaa ttatattata cattttggct
      541 ctaccattca agttttccag gaggataact ctttttatcc ttatgattat gggtgctaat
      601 aaattttgac gaggtgaaca tatgtattgc cctaaatgcg gacatgcact agacaatcac
      661 gaaaatcaat gtcctaactg tctaacacca atcatttatc aaagcaacaa caacggaaaa
      721 gcacaaaaag ccggcgaaat tatggaagaa tctggtaaat taatgtcagg atgtggttgt
      781 ttaatgacat tgttgataac tattcctgtc atagtaattt taataattat gtttttataa
      841 aaaggagata acgggatgag taagtatagt tacttgttaa aaaaatggtg gttttgggct
      901 cttgctatat tatttttagt tattttattt tacagctttt gggtaataat atacttggtg
      961 gcactagctt ccttaatatt cgggatagta aaagttgtta aaaatgaaaa cagacgaaaa
     1021 tacacaataa tattgactat
//
LOCUS       DASEAA010000327         1040 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.330, whole genome shotgun sequence.
ACCESSION   DASEAA010000327 DASEAA010000000
VERSION     DASEAA010000327.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1040)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.330"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            169..>1040
                     /locus_tag="U0342_003040"
     CDS             169..>1040
                     /locus_tag="U0342_003040"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463861.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2424356.1"
                     /translation="MKLSKFFTIIALSATVTSSLPIPMVKAESTTANETKIENQLPKT
                     DLKETPKEKTTNNNLKNQLVQAGTKTYNDYFPDDNLAKAVAEKMNKNVDESVTVEELA
                     KITKLDARSQGIEDSTGIEYLTGLEILYLEDNQLKSIDVSKNLNLKDLACSNNPLVNL
                     DVSKNLALEELTCENNELTQLDVSKNTALEYLYCPRNQLTKLDVSKNSALRYLACDVN
                     QLTSLDVSQNPALTNLGCTKNQLTDLDVSQNPNLSTLVCSDNQLTNLDVSQNQALAYL
                     TCDNNGLKNIDIDQ"
BASE COUNT          407 a          177 c          167 g          289 t
ORIGIN      
        1 tccaatatta taatcgaccg caactcgtaa cattttcgac acaaaatagc cgatattttg
       61 tatcttctgg tagtttctat ataaaatctc atcttcacgt gctaatatat attttgtttg
      121 aacactgctg actatactaa acaacagcaa ctgaaggagc aactaactat gaaactgtcc
      181 aaatttttta caataattgc attaagtgcc accgttacaa gtagcctacc gataccaatg
      241 gtaaaagcag agagcacaac cgcaaatgaa actaaaatcg aaaatcaatt accaaaaaca
      301 gatttaaaag aaacaccgaa agaaaaaaca acgaataaca acctgaaaaa tcaacttgtc
      361 caagcaggaa ccaaaactta taatgattac tttccagatg ataatttagc taaagcggta
      421 gcagaaaaaa tgaacaaaaa cgtggatgaa tctgtaactg tcgaggaatt agctaaaata
      481 actaaactag atgcacggag ccaaggcata gaagatagca ctggaatcga atatttgact
      541 ggattagaga tactttatct tgaggataat caactaaaaa gtatagatgt cagtaaaaat
      601 ctaaatctaa aagacttggc ttgctctaac aacccgttag tgaatttaga tgttagtaaa
      661 aatcttgctt tagaagaatt gacttgtgaa aacaatgaat taacacaact agatgttagc
      721 aaaaatacag ctttagagta tttgtattgc cctagaaatc agttaacaaa gctagatgtt
      781 agtaaaaact ccgctttacg ttatttggct tgcgatgtca atcagttaac cagtttagat
      841 gttagtcaaa atccagcttt aacaaatctt ggttgtacta aaaaccaact tacagattta
      901 gatgttagcc aaaatccgaa tttaagcact ttggtttgtt ctgataacca gttaaccaac
      961 ttagacgtta gccaaaatca agctctagca tatttgactt gtgataacaa tgggttgaag
     1021 aatatagata ttgatcaaaa
//
LOCUS       DASEAA010000328         1024 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.331, whole genome shotgun sequence.
ACCESSION   DASEAA010000328 DASEAA010000000
VERSION     DASEAA010000328.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.331"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..717)
                     /locus_tag="U0342_003041"
     CDS             complement(<1..717)
                     /locus_tag="U0342_003041"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="FUSC family protein"
                     /protein_id="HEM2424357.1"
                     /translation="MKKISMRERFALDPRVIKVLISITIAVILFPIMGDWIVYPTYVF
                     NAIYITAQMSKGDTYKSSIERIIGTIVGGLLAAFVYLLVPNHHYIMIPIGAALAVMLS
                     YLFTKKFTMVIVVITVMVLVGKGDGEPIVFLRDRLFDTMIGLVIGFVVYALYPRKKNK
                     KLNQVFISQEKAVLEKIKEIDINSEDAKSLAPKIKGLWKQLIDLRKTREQIITDSSFV
                     ASLTSDEPMLHFTHLVEQAIN"
     gene            complement(714..>1024)
                     /locus_tag="U0342_003042"
     CDS             complement(714..>1024)
                     /locus_tag="U0342_003042"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464549.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424358.1"
                     /translation="QMFIKEYSASKKANPRHVELYQALLPNYLQLFFHMQTMEDIGRV
                     GLSEEAKQALAQINVKVSDEINAKEANPVASFHVKKFVENFLAIKVGMKELVEGREQK
                     "
BASE COUNT          318 a          212 c          156 g          338 t
ORIGIN      
        1 attaattgct tgctctacta aatgagtaaa atgaagcatt ggttcatcag aagtcaaact
       61 cgcaacaaaa ctgctatctg taataatttg ttcgcgtgtt tttcttaaat ctatcaactg
      121 tttccacaaa ccttttattt tgggagctag agattttgca tcttcgctat ttatatcaat
      181 ttcttttatt ttttctaaaa ctgccttttc ctgagaaata aacacttgat ttaatttttt
      241 gtttttcttg cgtgggtaaa gcgcatagac aacaaaaccg atcacaagac caatcatcgt
      301 atcaaatagt cggtctctta aaaagactat cggctctccg tcgccttttc cgacaagtac
      361 cattactgta ataacaacaa taaccatcgt gaatttttta gtaaatagat agcttagcat
      421 aactgcaagt gctgcgccaa tcggaatcat aatataatga tggttgggaa ctagcaagta
      481 tacaaaggct gcaagcagtc cacctacaat agtaccgata atccgctcaa tgcttgattt
      541 atatgtatcc cccttactca tttgtgcggt aatataaata gcattaaata cgtatgttgg
      601 atacacaatc caatcaccca taatagggaa taaaatcact gctatcgtaa tactaataag
      661 cactttaata actcgtggat caagagcgaa acgttctctc atagaaatct ttttcatttc
      721 tgctctctcc cttccactaa ttctttcatt ccaaccttaa tagctaggaa gttctcaaca
      781 aattttttca cgtgaaatga ggcaactgga ttggcttctt tcgcgttaat ttcatcagaa
      841 actttcacgt taatctgagc aagggcctgt ttcgcttctt ccgacaaacc aactcgtcca
      901 atgtcctcca ttgtttgcat atgaaaaaaa agttgaagat aattaggcag taacgcttga
      961 tacagctcca catgacgagg attcgctttt ttactagcac tatattcttt aataaacatt
     1021 tgtg
//
LOCUS       DASEAA010000329         1024 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.332, whole genome shotgun sequence.
ACCESSION   DASEAA010000329 DASEAA010000000
VERSION     DASEAA010000329.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1024)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.332"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..750
                     /locus_tag="U0342_003043"
     CDS             <1..750
                     /locus_tag="U0342_003043"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466312.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ParB/RepB/Spo0J family partition protein"
                     /protein_id="HEM2424359.1"
                     /translation="PYQPRKIFDTKAINELRDSIKIHGVLQPIILRNTDKGYEIVVGE
                     RRFRAAKEAKLKEIPAVVRDLTEEEMMELSVIENLQREDLSPLEEAESYQFLMKKLGL
                     TQAKLAERVGKSRPYIANFVRLLTLPEEVQVMLRDGSLSAGHGRVLLGLKLKKNIIPT
                     AKKAVAQGLTVRQLEDVVNNLNENVSRETIKPARVPIFIRESESQLRDKFGTAVSIKR
                     RDKKGKIEIEFLSDDDLDRILEILDIQFDDE"
     gene            757..960
                     /locus_tag="U0342_003044"
     CDS             757..960
                     /locus_tag="U0342_003044"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466311.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF951 domain-containing protein"
                     /protein_id="HEM2424360.1"
                     /translation="MFMEKKHFDLNDIVEMKKPHPCGTNRFKIIRMGMDIRIKCEGCG
                     HSVMIPRREFERKVKKILVKAEQ"
BASE COUNT          350 a          150 c          222 g          302 t
ORIGIN      
        1 ccatatcaac cacgtaaaat ctttgatacg aaagcaatca atgaattacg tgactccatt
       61 aaaattcacg gtgttttgca gccaataata ttaagaaata cagataaagg atatgaaatt
      121 gttgttggtg aacgtagatt tcgtgcagca aaagaagcta aattaaaaga aatcccagca
      181 gttgtacgtg atttaacgga agaagaaatg atggagcttt ctgtcattga aaacttacaa
      241 cgcgaagatt tatctccact tgaagaagcg gaatcatatc agttccttat gaaaaaattg
      301 ggcttaacgc aagcaaaatt agcagaacgc gttgggaaaa gtagaccata tatcgctaac
      361 tttgttcgtc ttttgacatt acctgaagaa gttcaagtaa tgttacgtga tggctcattg
      421 tcagctggac atggccgagt gttactaggt ttgaaactta agaaaaatat tatcccaacg
      481 gctaaaaaag ctgtggcgca agggctgaca gtacgacaat tagaagatgt ggttaataat
      541 ctaaatgaaa atgtttcacg tgaaacaatt aagccggcta gagttcctat ctttatccgt
      601 gaaagcgaaa gccaattacg tgataaattt ggtacggctg tctcgattaa acgtcgcgat
      661 aaaaaaggta aaattgaaat tgaattttta tctgatgatg atttagatcg cattttagag
      721 attttagata ttcagtttga tgatgaatag gttgtgatgt ttatggaaaa aaagcatttc
      781 gatttaaatg atattgtgga aatgaaaaag cctcatcctt gtggtaccaa tcgatttaag
      841 attatacgca tggggatgga tattcggatt aagtgcgaag gttgtggtca tagtgtgatg
      901 atcccccgcc gcgagttcga acgaaaagtg aagaaaattt tagttaaagc tgaacaataa
      961 tagggaacag acgatgaatt aggtcgtctg ttctttttta agccttttag ttgaagtttg
     1021 tctc
//
LOCUS       DASEAA010000330         1023 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.333, whole genome shotgun sequence.
ACCESSION   DASEAA010000330 DASEAA010000000
VERSION     DASEAA010000330.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1023)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.333"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(113..742)
                     /locus_tag="U0342_003045"
     CDS             complement(113..742)
                     /locus_tag="U0342_003045"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464165.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424361.1"
                     /translation="MKNKTTKKIICGGLATVLLSSSLALPTTALASTSEQMVQDYQQE
                     ETFSESALTELDNLTAGKYITFDSSLKQYKVNSTIGSEMTPEKIEAVNKQVAETNNLL
                     ALAKKDSSTNIIAVTPKGEETVVKRGLLKGAGVNRVTYHWNYARIRLSKNTVRTMGAG
                     LSIAGIWLPLKVVSKVCASLGVGTGFVKHGIWFDYNYFSNLLLTGYGWQ"
BASE COUNT          323 a          199 c          135 g          366 t
ORIGIN      
        1 gacaatttta gtatcccata taaaaaaact gggtatcgct ataattgtta caataagcgc
       61 tctgatataa aaccaacgtg ttcctcgcat ttagaattcc tccaagttaa agttactgcc
      121 acccatagcc agtaagaagt aggttagaaa aataattata atcaaaccaa attccgtgtt
      181 taacaaaacc tgtacctaca cccaaagaag cacaaacttt tgatactact ttcagcggca
      241 accagatccc agctatactt aaacccgcac ccattgttct tactgtattt tttgacaatc
      301 ttatacgagc gtaattccag tggtatgtaa ctctattcac tcctgctcct tttaacaaac
      361 ctcttttaac cactgtctcc tcacctttag gagttacagc aattatattg gtacttgagt
      421 cctttttagc taaagcaagt agattatttg tctcagccac ttgtttgtta accgcctcta
      481 ttttttctgg tgtcatttca ctaccaatag tagaatttac tttatattgt tttagtgaac
      541 tgtcaaaagt tatatatttt cctgcagtaa gattatctaa ttctgttaaa gctgactctg
      601 aaaaagtttc ctcttgttga taatcctgaa ccatttgttc agatgttgat gctaaagcag
      661 ttgttggtaa tgccaatgaa ctagataaaa gtacagtagc taacccccca caaataattt
      721 ttttagttgt tttatttttc atcatctttt tgctcctttt atgtctgaat ttgttttgaa
      781 ctaacaaaag ttactaacta ataattaagc ataagtatta gaattttcta tacaacctcc
      841 ttacaaatac tctaacatgc ctcgttcatg tataaccaaa aatgtaatga aatgtccgat
      901 tcttatcgtg aacgactaaa aatgaggctt atttagattt attcttacac aatttgagta
      961 acattgtgtt tttagtcaca aaatattaca caacacgagt tattattcat tatttatgca
     1021 ttt
//
LOCUS       DASEAA010000331         1017 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.334, whole genome shotgun sequence.
ACCESSION   DASEAA010000331 DASEAA010000000
VERSION     DASEAA010000331.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1017)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.334"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            42..>1017
                     /locus_tag="U0342_003046"
     CDS             42..>1017
                     /locus_tag="U0342_003046"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724621.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase family 2 protein"
                     /protein_id="HEM2424362.1"
                     /translation="MEKPFLTVVVPCYNEEEVLSESVTQLTNIIEKLVMSESISDKSQ
                     IMFVDDGSKDRTWELIQQYSESNEHVSGLKLSRNYGHQGALLAGLTEAHAYSDCVVSI
                     DADLQDDVNAIIEFIEKYHEGYDVVYGVRDKRDTDTYFKRNSALAFYRIMSKLGVNMV
                     PNHADYRLLSKRALTEFLRYKEENMFIRGIVPLLGFKSTKVFYNRNERFAGESKYPLK
                     KMVLFAVDGITSFSVAPIRLLLVLGSVIFMIGVVMGIYAIVQKIIGAVVPGWTSLIVS
                     LWLIGGIQLIGIGVLGEYIGKIFKQVKERPRFTIEENVFETKCKENKIS"
BASE COUNT          350 a          130 c          211 g          326 t
ORIGIN      
        1 aattttatag aatagcatat caataagggg ttgtagtgag agtggaaaag ccatttttaa
       61 cagttgtggt accttgttat aatgaagaag aagttctgag cgagagtgtt acacaactaa
      121 caaatattat agaaaaatta gtgatgagtg aatcaatcag tgacaaaagt caaattatgt
      181 ttgtagatga tggaagtaaa gatagaactt gggaacttat acagcaatac tcagaatcaa
      241 atgaacatgt atctggacta aaattaagtc ggaattatgg acatcaagga gctttacttg
      301 ctggcttaac agaagcacat gcatattcag attgtgtcgt gtctattgat gctgatttac
      361 aagatgatgt gaatgcgatt attgagttta tagaaaaata tcatgaaggt tacgatgtcg
      421 tttatggcgt acgagataaa cgtgacactg acacttactt caaaagaaat tcagcgttag
      481 ctttctatag aattatgagc aaactaggag ttaatatggt tccaaatcat gcggactatc
      541 gactgcttag caagcgtgca ttaacagaat tcttacgtta taaagaagaa aacatgttta
      601 ttcgaggcat tgtaccatta ttaggtttca aatctacgaa agtattttac aatcgaaatg
      661 agagatttgc aggagaatca aaatatccac ttaagaaaat ggttttattt gctgtggatg
      721 gaattacatc tttcagtgtt gcacccattc gattattatt agtccttgga tctgttattt
      781 ttatgatagg cgtagtaatg gggatttatg ccattgttca aaaaatcatt ggtgctgttg
      841 tacctggttg gacatcttta attgtttcct tgtggttaat tggcggaatt caattaattg
      901 gtattggtgt tctaggtgaa tacattggaa aaatctttaa acaagtaaaa gaacgacctc
      961 gttttactat tgaagagaat gtttttgaaa caaaatgcaa agaaaataaa atcagcg
//
LOCUS       DASEAA010000332          991 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.335, whole genome shotgun sequence.
ACCESSION   DASEAA010000332 DASEAA010000000
VERSION     DASEAA010000332.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 991)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.335"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..173
                     /locus_tag="U0342_003047"
     CDS             <1..173
                     /locus_tag="U0342_003047"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725055.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424363.1"
                     /translation="GEEASIPEPPELTELEKLTQDYADLMLYVAEVEQKTEQTQQDNA
                     NLLLSLAEAGVL"
     gene            174..320
                     /locus_tag="U0342_003048"
     CDS             174..320
                     /locus_tag="U0342_003048"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743969.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="XkdX family protein"
                     /protein_id="HEM2424364.1"
                     /translation="MINWYEKVKDYFLGGYYTEADVNKFVTLKKITRSQADEIIAMKE
                     AKAE"
     gene            361..666
                     /locus_tag="U0342_003049"
     CDS             361..666
                     /locus_tag="U0342_003049"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003733957.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424365.1"
                     /translation="MVLGSISIAGMSVGELIALISLIAAIVGFVIRWALVAPLRNMID
                     SLDITLKSLREEMSESKKDRMSLREKQNDHDKEIALLKREDKAIWKYVTEKNEKEVK"
     gene            666..947
                     /locus_tag="U0342_003050"
     CDS             666..947
                     /locus_tag="U0342_003050"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723294.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage holin"
                     /protein_id="HEM2424366.1"
                     /translation="MKINWKVRLKNWRTVVATLITVLGVAWTAGGFTISDLDNWSVLW
                     LSFVRFLNSPMAIITTIVAVVGILMDPTTSKFSDSLKVMNYSEPRKDDK"
BASE COUNT          362 a          136 c          220 g          273 t
ORIGIN      
        1 ctggtgaaga agcaagcatt ccagaaccac cagaattgac cgaacttgaa aaattaacac
       61 aagattatgc agacttaatg ctatatgtag cagaagtcga acagaagacg gaacaaacgc
      121 aacaagataa tgcaaactta ctattatctt tggcggaggc aggtgttttg taaatgatta
      181 actggtatga aaaagtaaaa gattattttt taggcggcta ctatactgaa gcagatgtta
      241 ataaattcgt tactttaaaa aagataacga gatcacaagc agatgaaata atcgctatga
      301 aagaagcaaa agccgaatag gcttattttt tatggaccga caacgagggg atgatgaaaa
      361 ttggtacttg ggagcatatc gatagcagga atgagcgtgg gggagttaat agctttaatt
      421 agcttaatag cggcaattgt ggggtttgta attagatggg cattagtcgc gcctttgcga
      481 aatatgattg attctcttga tataacttta aaaagtctta gagaagaaat gtctgaaagc
      541 aagaaagatc gtatgagttt acgagaaaag caaaacgacc acgataaaga gattgcttta
      601 ttgaaacggg aagataaagc gatttggaaa tatgttactg aaaaaaatga aaaggaggtg
      661 aaatgatgaa aattaactgg aaggtacgat tgaaaaactg gcgaactgtt gtggcaactc
      721 ttattacagt tctaggagtc gcgtggacag caggaggttt tactatatct gatttagata
      781 actggtccgt cttgtggctt tcgtttgtaa ggttcctaaa tagccctatg gcaattatta
      841 ccacaattgt agccgttgtc ggtattttga tggacccaac aactagtaaa ttctccgata
      901 gtttgaaagt aatgaattat tcagaaccaa gaaaggatga taaataatgt cagtactaca
      961 atataattat atcaataaaa atcaattttc a
//
LOCUS       DASEAA010000333          988 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.336, whole genome shotgun sequence.
ACCESSION   DASEAA010000333 DASEAA010000000
VERSION     DASEAA010000333.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 988)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.336"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            472..>988
                     /locus_tag="U0342_003051"
     CDS             472..>988
                     /locus_tag="U0342_003051"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734772.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424367.1"
                     /translation="MLMSLSVLPLATYASETENTPTESYDGENFIATQIGNTLVIEDK
                     KTGETVKIEMNDEENGVITSDDGTIENVHRDEEGNVYVDNELELEAPPLDIEDGINIA
                     TQPRLLKASKWIYVQTTKYNTTTQGNMRSLALGILSFMPITGPIFGIVAIIDAARSMG
                     AKTLYVRVKQYR"
BASE COUNT          354 a          128 c          200 g          306 t
ORIGIN      
        1 gctttgagta atgtggcgga ttggaagcaa attatgaaga attaaattta aattgatggg
       61 caaatgattt aataaagaaa tctttcagga gtccacttgt gattatatca acttgacata
      121 ttagtaacat cattgtaaca ttactaatgt aagcggatac atatatagtt gaagtacttt
      181 aagaaaaaaa caaaagtatt gtagcgtggg atgtcgcgct tttaggtaaa ggagatggat
      241 aaaatgaaaa aaattattat tggtgtgttt ttcgggattc ttattctagt tattgttggt
      301 ctatatgttt catatgtcta tatgaatcaa agctttatat gggttgcagg gatacttttg
      361 ttgttaggta cattattcaa ttggtttttg tataataagt atctgtctaa aaaaacataa
      421 taagggagcg agataaccat gaaaaaaatc attatagtac tagcatcagt tatgttaatg
      481 tctctttcgg ttctgccact ggcaacttat gcatcagaaa cagagaacac tcctactgaa
      541 tcatatgacg gagaaaattt tatagcaact caaataggta atactttagt tattgaagat
      601 aagaagacgg gcgaaactgt aaaaattgaa atgaatgacg aagaaaacgg ggtaattaca
      661 tctgatgatg gtacaataga aaatgtacat agggatgaag aaggtaacgt ttatgtagat
      721 aatgagcttg aactagaagc acctccttta gacattgaag atggcataaa tatcgccact
      781 cagcctcggt tactgaaagc ttctaaatgg atatatgttc aaacaactaa gtataataca
      841 accacacaag gcaatatgag aagtcttgca ttggggattc tatcattcat gccaattaca
      901 ggtccaatct ttggaatagt tgcaattatt gatgctgctc gatcaatggg ggcgaaaaca
      961 ttatatgtta gagtgaaaca atatcgta
//
LOCUS       DASEAA010000334          986 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.337, whole genome shotgun sequence.
ACCESSION   DASEAA010000334 DASEAA010000000
VERSION     DASEAA010000334.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.337"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            90..374
                     /locus_tag="U0342_003052"
     CDS             90..374
                     /locus_tag="U0342_003052"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726995.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3130 family protein"
                     /protein_id="HEM2424368.1"
                     /translation="MTKIRINKEKMINHATTLGDSAGKLDYYPLKNENMSYTQTNSIH
                     LLRESLLELLEGIENLGTVAQDDATRIKQMGEAFAKQDKSISQKMNLEVR"
     gene            416..727
                     /locus_tag="U0342_003053"
     CDS             416..727
                     /locus_tag="U0342_003053"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724756.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424369.1"
                     /translation="MEREDDALYAIKNKIRHLEDMEEDIHQARREIDDILYHMKEVWR
                     GEHAEHTFWQIEDEVNHYNRRTACMTNDIHTELNNEQKKHRQNLHALETKQQDIKKEM
                     T"
     gene            730..870
                     /locus_tag="U0342_003054"
     CDS             730..870
                     /locus_tag="U0342_003054"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424370.1"
                     /translation="MATKPTVENLYIAGTKQLTGFGREYEYLLQHGYTYDVKTSTMKL
                     KK"
BASE COUNT          407 a          158 c          182 g          239 t
ORIGIN      
        1 attttcaatg ctactaaatg acaatccaag aaaatgtcat tataatagaa ccatgataca
       61 accttcacat acagaaaggg aaaacaacca tgacaaaaat tcgtattaat aaagaaaaaa
      121 tgattaatca tgccacaacc ctaggtgata gtgcggggaa attagattac tatcctttga
      181 aaaatgaaaa catgagttat acgcaaacta attctatcca ccttcttcga gaatcattac
      241 ttgaactact tgaaggcatc gaaaatttag ggactgttgc acaagatgat gctactcgaa
      301 tcaagcaaat gggggaagct tttgcaaaac aagataaatc catcagccag aagatgaatt
      361 tggaggtgcg ttaagtggat aaacgtaccc aagaattagg tgaaataaaa aaaaaatgga
      421 gcgagaagat gacgctctat acgcgattaa aaataaaatt agacatttag aggatatgga
      481 agaagatatt catcaagcta gacgcgaaat cgatgacatc ctttaccata tgaaagaagt
      541 ttggcgagga gaacatgcag agcatacttt ttggcaaata gaagacgagg taaatcatta
      601 caaccggaga actgcttgca tgactaacga tattcatacc gaactaaata atgagcaaaa
      661 aaagcatcga caaaatctcc acgcgctcga aactaaacaa caggatatta aaaaggagat
      721 gacgtagcta tggctacaaa gccgactgta gaaaacttat acatcgctgg gactaaacaa
      781 cttacgggtt ttgggcgtga atatgaatac ttactacaac atggttatac ttatgatgta
      841 aaaacaagta caatgaagtt gaagaaatga ggaattcaag catgaaatta gacgataatg
      901 taaaagaaat aatccttaaa aaaagtgaat ttctactcca taataatttt aaattaatag
      961 aaataacgga tgctactatc acattt
//
LOCUS       DASEAA010000335          986 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.338, whole genome shotgun sequence.
ACCESSION   DASEAA010000335 DASEAA010000000
VERSION     DASEAA010000335.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 986)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.338"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(150..>986)
                     /locus_tag="U0342_003055"
     CDS             complement(150..>986)
                     /locus_tag="U0342_003055"
                     /inference="COORDINATES: protein motif:HMM:NF013661.1"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015987338.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="N-acetylmuramoyl-L-alanine amidase family
                     protein"
                     /protein_id="HEM2424371.1"
                     /translation="ADNHRRYFRDLKERYASAHIFIDDKEAICIIPLNEVAYHANERS
                     CKLTALQASTSYYRGGNANLTSIGIEMCLDKNGNITVATFNRSVDVAAELCKTYDLTA
                     SDIIRHYDVTGKNCPAPWVAKPSELTRFRNAVNAKLKGASQNKNRHDGKVVDSAPLLT
                     KMDFKSSPFRMYKAGTEILVYEHNQYWYKTYIDDKLYYMYKSFCDVVAKKDAKGRIKV
                     RIKSAKDLRIPVWNNTKLNSGKIKWYAPNTKLAWYNNGKGYLELWYEKDGWYYTANYF
                     LK"
BASE COUNT          287 a          194 c          157 g          348 t
ORIGIN      
        1 ctcatcccaa attctcctct ttttaactta aattatatta tactatttaa gtatgaggaa
       61 gtggaacgta tgtacttata attcgaagtt atgaaaaatc cccttcaata taaaacaaaa
      121 aacccccgca aaacgcgagg gcaatagttt tattttaaga agtagttagc agtgtaatac
      181 caaccgtcct tttcgtacca caattctaaa taacctttcc cgttgttgta ccatgctaat
      241 ttcgtattag gtgcatacca tttaattttc ccagaattca attttgtgtt attccacact
      301 ggaatacgaa ggtctttcgc gcttttaatt cgaactttga tgcgaccttt cgcatctttt
      361 ttagctacaa catcacaaaa gctcttatac atgtagtata gtttgtcatc aatataagtc
      421 ttgtaccaat attgattatg ttcataaaca agaatttcag tccctgcttt atacatgcgg
      481 aatggcgacg atttaaaatc catttttgtg agcaatggcg cactgtcaac gacttttcca
      541 tcatgtctgt ttttattttg tgatgcacct ttcaattttg cattgactgc gtttctgaaa
      601 cgtgttaatt cggaaggttt cgcaacccaa ggcgcaggac aattttttcc ggttacatcg
      661 taatgacgga taatgtcact agccgttaaa tcgtatgttt tgcatagctc tgcagctaca
      721 tcaactgatc gattaaatgt tgctacagta atattcccgt ttttatctaa gcacatttca
      781 ataccaattg aggttaaatt cgcatttccg ccgcgatagt aacttgtact tgcttgaaga
      841 gctgttaatt tgcaacttct ttcgtttgca tggtatgcaa cttcatttag agggataata
      901 caaatagctt ctttatcatc aataaaaata tgtgcagaag cgtaacgctc ttttaaatct
      961 ctaaaatatc gtctgtgatt atctgc
//
LOCUS       DASEAA010000336          960 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.339, whole genome shotgun sequence.
ACCESSION   DASEAA010000336 DASEAA010000000
VERSION     DASEAA010000336.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 960)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.339"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>960
                     /locus_tag="U0342_003056"
     CDS             <1..>960
                     /locus_tag="U0342_003056"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464112.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AI-2E family transporter"
                     /protein_id="HEM2424372.1"
                     /translation="TVAAPIILAGISYYLFNPIIDWLEKHKWKRGWAIALLYLVIIGL
                     LILLFSFVIPAVKDQIVSLFKSFPGYWDQITQKFDEFSRSSLFDQIKDKLNTNMSDIM
                     KTLSTKGTSVINSAISSIGSIVGTVTEVVLAIVTTPLVLFYLLKDGKKLPDFLLKMLP
                     VNGRAHTRQVLGEANHQISSYIRGQIIVSLCIGILLFIGYLIIGLPYALTLAIIAACT
                     SIVPYLGPAIAITPAIIIAIVTSPWLLIKLIIVWCVVQLLEGKFISPQVMGKTLKVHP
                     ITILFVILVAGNLFGVLGVIFAVPGYAVLKVIVTHVFIWFKRIS"
BASE COUNT          282 a          160 c          177 g          341 t
ORIGIN      
        1 accgttgctg caccaatcat tttagctggg atatcttact atttatttaa tcctatcatt
       61 gattggttag agaaacataa gtggaagcga ggttgggcaa ttgcattact atatttagtg
      121 attatcggtt tactcattct actatttagt tttgtcattc cagctgtgaa agatcagatt
      181 gttagcttgt tcaaatcatt cccggggtat tgggaccaaa tcacacagaa atttgatgag
      241 ttcagtcgct cgagcttatt tgatcaaata aaagataaat taaatacgaa catgagcgat
      301 atcatgaaga ctctttccac aaaaggaaca tctgtaatta atagtgctat ttcaagtatt
      361 ggtagtattg ttggaacggt aacagaggtt gttttagcga ttgtaactac gccgcttgtt
      421 ttattctact tgttaaaaga tggaaaaaaa ttaccagact tcctactaaa aatgttacca
      481 gtaaatggtc gtgcgcatac tcgccaagta cttggtgaag caaaccacca aattagttca
      541 tatattcgtg gacaaattat tgtaagtttg tgtattggta ttttgctatt tatcggttat
      601 ttaattatcg gtctaccata tgcattaaca cttgctatta ttgcagcttg tactagtatt
      661 gttccttatt taggaccagc aattgcgatt acaccagcga ttattatcgc gattgttact
      721 tcaccttggt tactaattaa attaatcata gtctggtgtg tcgttcaatt acttgaaggt
      781 aaattcattt ctcctcaagt catgggtaaa acactaaaag tacatccaat cacgatttta
      841 ttcgttattt tagtagctgg aaatctattc ggtgtactgg gtgttatctt cgcagtacca
      901 ggttatgcgg tacttaaagt catcgtaacg catgtattta tttggttcaa acgaatctct
//
LOCUS       DASEAA010000337          957 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.340, whole genome shotgun sequence.
ACCESSION   DASEAA010000337 DASEAA010000000
VERSION     DASEAA010000337.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 957)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.340"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            127..957
                     /locus_tag="U0342_003057"
                     /pseudo
     CDS             127..957
                     /locus_tag="U0342_003057"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463840.1"
                     /note="frameshifted; incomplete; missing C-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          396 a           89 c          190 g          282 t
ORIGIN      
        1 ttgatatttc ataaaaaagt ggaaggtatc ataattaatg gattttagaa gagtaagttt
       61 atttaaaaag ataggaagag gcgaacgttt gttatgcttc ttgttttctt gataagcaga
      121 gtttgaatgg caaatacttt aaaacaaaca ctaagaagtg gtgagatgta tatggtaagg
      181 aaattttttg gatatatagg aaccagaaga tttaatatat acgaagcatt agtttataga
      241 aataggtata gtttaaagaa taaagagaag ttaatttttt atgatggaac aagtaaaata
      301 aagcaaaaga ttgcaccgaa aagtggaagc aaaaatggaa gaagtcctca ttttgcatat
      361 tatccaaatt cgtctcatga tggagtagga aaggaaatga ctgttacaca taaggcatac
      421 caagaggcta tatctacttt gaaaattttt tgtatagaaa cattagatgg tgaagtaatt
      481 atacttgaag tagaagaggc taaactggaa tattatatta atgatgaagg tcagtattat
      541 ttagttgata ttcttatagt attgaaaagt acatatccat tctattattt ttataagtgg
      601 gagggaatat tagctataga aatctgggta agccataaaa cagagcaaaa gaagattgaa
      661 gcgctaaaca ggaagggtat tccaactata gaatgtaaga tatctaaaaa gttgttatta
      721 aatgaggata tccaaagcga taaggaatac ttaaagaatg ttcaaaaggt aattaatcgt
      781 tactcagata taaaatttca tttatacgga agatttattt ctgatgcaaa aatcgatgaa
      841 acttcagtgt ggggagagaa gtacttggaa tttaaaaact atcataatga aaaaaagaat
      901 ggaactgcac ttcagaaaac tagaaaaaca aaaattagaa ctggagaaga aaaataa
//
LOCUS       DASEAA010000338          953 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.341, whole genome shotgun sequence.
ACCESSION   DASEAA010000338 DASEAA010000000
VERSION     DASEAA010000338.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 953)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.341"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            91..>953
                     /locus_tag="U0342_003058"
     CDS             91..>953
                     /locus_tag="U0342_003058"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466118.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4969 domain-containing protein"
                     /protein_id="HEM2424373.1"
                     /translation="MKKRGLLLVSVLMLFIFLTVACGSSEDNEESGEISTKEIELTVD
                     DPIIPTDENGEATIEGTVDPKSKLTIDGKAVKKDDSGRFTYTYSLPNDNVAEVDVKLL
                     AVRKNYKDEKYTITITNNSKAYNDNMVKQEAIQKEEAEKAEKERKEAEEKAKQEEEAA
                     AAKAATTDENTPSDDTVYGTLASKDTLTKEGDAFYKDEALDVLYSTVENDEIFQVLIQ
                     LGDESTIRKDLDKNHLTELARDYMESDATLIQTVSDESFVYESPSINKTYTVDYMLND
                     DGYVIAVYVTQA"
BASE COUNT          380 a          140 c          181 g          252 t
ORIGIN      
        1 tatatggcac atttttaaaa aaacaaggtt aatcatgtta taatagccat tctgtatatt
       61 tatatctaaa cacaaaagga gccggaaaag atgaaaaaaa gaggtttatt gttggtaagt
      121 gttttaatgc ttttcatttt tttgacagta gcatgcggga gttctgaaga caatgaagaa
      181 agtggagaaa taagtacgaa agaaattgaa cttaccgttg acgaccctat tataccaacc
      241 gatgaaaacg gtgaagcaac tatagaggga actgtagatc ctaaatccaa attaaccatt
      301 gatggtaaag ccgtaaaaaa agatgacagc gggagattta cttatactta cagtttacct
      361 aacgataatg ttgcagaagt tgatgtcaaa cttctagcgg tcagaaaaaa ttacaaagat
      421 gaaaagtaca ctataactat tactaacaat tcaaaagcat ataacgacaa catggttaaa
      481 caagaggcaa tacaaaaaga ggaagccgag aaagctgaaa aggaacgtaa agaagcggag
      541 gaaaaagcaa aacaagaaga agaagctgcc gctgcaaaag ctgcaacgac tgatgaaaac
      601 actccttctg atgataccgt atatggtact ttagccagta aagatacttt aacaaaagag
      661 ggagatgcat tttataaaga tgaagcactt gatgtactct attctacagt agaaaacgat
      721 gaaatttttc aagtacttat acaattaggc gacgaaagta cgattcgaaa agatttagat
      781 aaaaatcatt taacagaatt agcacgagat tatatggaat ctgatgccac tcttatacaa
      841 actgtctccg atgaatcttt tgtttatgaa tctccatcta taaataaaac atatacagta
      901 gattatatgt taaacgatga tggttatgtt attgcggttt atgttacaca agc
//
LOCUS       DASEAA010000339          949 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.342, whole genome shotgun sequence.
ACCESSION   DASEAA010000339 DASEAA010000000
VERSION     DASEAA010000339.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 949)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 949)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.342"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>949
                     /locus_tag="U0342_003059"
     CDS             <1..>949
                     /locus_tag="U0342_003059"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HEM2424374.1"
                     /translation="FNDYFIYAGRGFGKNGLLSCMIFECTTKNHGVDHYNIDIVATSE
                     DQAKTSFEDIYNMLEENKDTMKNVYRWNLVAIQHRKNGSTIKYKTSNARTKDGSRPGA
                     VAFDEEHAYEDYSNYAVHTSGLGKKERSRRFHLTTDGYVRGSVLDDRKVLAQQVLNGE
                     KPNSKMFPFICKLDSPDEVQNKTKWAKANPMILYYKPLRIEIDQHWDDAQSSSEIMVE
                     FMTKRMNCPTQDPTTVAVKWDDIKATNQPMPSLKMAPAIGGIDFADVRDFCAVGLLFK
                     KEGKYIFKHHTFICAESLKITKFKFPIHEAVEKGLATIIH"
BASE COUNT          355 a          141 c          187 g          266 t
ORIGIN      
        1 tttaacgatt attttattta tgctggtaga ggtttcggta aaaatggttt attaagttgc
       61 atgatttttg aatgtacaac taaaaatcat ggagtggacc attacaatat cgatattgtt
      121 gcgacatcgg aagaccaagc gaaaacaagt tttgaagata tttataatat gttagaagaa
      181 aataaagaca cgatgaaaaa cgtctatcgc tggaatttag ttgcaataca acatcgaaaa
      241 aatggatcaa cgatcaaata taaaacatca aatgcaagaa caaaagatgg ttcaagacct
      301 ggtgcagttg cctttgatga agaacacgca tatgaagatt attcaaatta tgcagtacac
      361 acttctggat taggtaaaaa agaacggtca cgtagattcc atttaacgac cgatggttat
      421 gttcgtggaa gtgttttaga tgacagaaaa gtattagcac aacaagtgtt aaatggagaa
      481 aagccaaact caaaaatgtt ccctttcatt tgcaagttgg atagtccgga cgaagttcaa
      541 aataaaacaa aatgggcaaa agcaaatcct atgattttat actacaaacc attgcgaata
      601 gaaattgacc aacattggga tgatgcgcaa tcatcttctg aaattatggt tgagtttatg
      661 actaaaagaa tgaactgtcc aactcaagat ccaaccactg tagcagtaaa atgggatgat
      721 attaaagcaa caaatcaacc tatgccatcg ttaaaaatgg ctccagcgat tggaggtatc
      781 gattttgcgg atgttagaga cttttgtgcg gtagggttgt tatttaaaaa agaaggtaag
      841 tatatcttta aacatcatac attcatttgc gctgagtcat tgaaaatcac gaaatttaaa
      901 tttccgattc atgaagcagt ggaaaaagga ctggcaacta tcatacatg
//
LOCUS       DASEAA010000340          935 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.343, whole genome shotgun sequence.
ACCESSION   DASEAA010000340 DASEAA010000000
VERSION     DASEAA010000340.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 935)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 935)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.343"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>935
                     /locus_tag="U0342_003060"
     CDS             <1..>935
                     /locus_tag="U0342_003060"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HEM2424375.1"
                     /translation="TWKLQGFSEGKINSIQAYYNEIREYKHPEQKLNIAFTQDKNSFT
                     ATISVDELASLSLPNNQTVWKFKVNNDYPYTHLITDGPIINKPFQPENSLYKYHFDFP
                     EGILTLVSKPIELLASIEEYKLDSDVMSGSIKIKSPLPSNQFNAKLIFKRRPTPSFYL
                     FHEQQQSFDLGLITENIVNFSIPTKDLSTAFLVDNTNILDAIIEVSSSHNKTGLSAFI
                     SIDADMKPAIPREIKIAAPLFATLRSYITGSNRLSFYFKKNIQGLVSLSQLKETKKDL
                     TLQFKLENSISEGQIVAKRADKKANTFEYNVEQVW"
BASE COUNT          349 a          176 c          134 g          276 t
ORIGIN      
        1 cacatggaaa ttacaaggct tctcagaagg aaaaatcaat agtatccaag catactacaa
       61 cgaaatccga gaatataagc accctgaaca aaagttgaat attgctttta ctcaagataa
      121 aaattcattc acagctacta tttctgttga tgaacttgct agtctttctc taccaaataa
      181 ccagactgtg tggaaattca aagtaaataa tgattatcca tatacacatt taatcacaga
      241 tgggccaatt ataaataaac ccttccaacc agagaactcg ctttacaaat accattttga
      301 ttttcctgaa ggtattttaa cacttgtcag taaacctata gaactactag cttcgataga
      361 ggagtacaaa ttagattctg atgtgatgtc tggttctatt aaaatcaagt cgccacttcc
      421 aagtaaccaa tttaatgcaa agctaatttt caaacgtaga cctacaccaa gcttttattt
      481 atttcacgag caacaacaat catttgattt agggcttatt actgaaaata tcgttaattt
      541 ctctattccc accaaagatt tatctacagc tttcttagta gacaatacaa atatactaga
      601 tgccataatc gaagtatcat ctagtcataa caaaacaggc ttatctgcat tcatatccat
      661 tgatgcagat atgaagccag ctattcctag agaaattaaa atagcagcgc cactttttgc
      721 aactctgcgc tcctatatta caggctctaa cagattatca ttctatttca aaaaaaatat
      781 tcaggggtta gtgagtctga gtcaattaaa agaaactaaa aaagatttga cactgcaatt
      841 caaattagaa aacagtatct ctgaaggtca aatagtagct aaacgtgcag ataaaaaagc
      901 gaatacattt gaatataatg tagaacaagt atggc
//
LOCUS       DASEAA010000341          934 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.344, whole genome shotgun sequence.
ACCESSION   DASEAA010000341 DASEAA010000000
VERSION     DASEAA010000341.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 934)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.344"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>934
                     /locus_tag="U0342_003061"
     CDS             <1..>934
                     /locus_tag="U0342_003061"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464145.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine/threonine protein kinase"
                     /protein_id="HEM2424376.1"
                     /translation="KDLSSKYLPKIEVMIPNGNQLIVYEEYINGKNLADLMKANATFD
                     ADEVTRLMLMLSDALTELHANAIIHRDIKPSNIMISSDGVLKLIDFDASRVFEVGKNQ
                     DTVNLGTIGYAAPEQYGYSQTDVRSDIYSIGVLMLELLLGKNTLPDKEHATSLEKIAM
                     QAAAFDPEQRYQSIQDFRTAVKNDSLGPSYVSELSDFTELDNFSTESDWENVSADYEK
                     DFVPWYKHIPGFRTGTPWKMIVGVLGYIFLLFGLFTPPTEGVKMSPIVNFFNNFFLIV
                     PAFVIFTNLCGIWSKLPLLKSSSPGTRKAGIVIYI"
BASE COUNT          290 a          177 c          170 g          297 t
ORIGIN      
        1 aaagatttat ctagtaaata tttgccaaaa atcgaagtga tgattccaaa tggcaatcaa
       61 ttaattgttt atgaagaata cataaatgga aaaaatttgg ctgatttaat gaaagcaaat
      121 gctacgtttg atgcggatga agttacgcgg ttaatgctga tgctatctga tgcacttaca
      181 gaattacacg ctaatgcgat tattcaccga gatattaagc catcaaacat tatgatatct
      241 agcgacggcg tattaaaatt aattgatttt gatgcttccc gtgtatttga agtcggtaaa
      301 aatcaagaca ctgtcaacct cggcacaatc ggttacgctg ctcccgaaca atacggctat
      361 tcacaaacag acgtgaggtc ggacatatac agtatcggtg ttcttatgct cgaactttta
      421 ttaggaaaaa atactttacc agataaagaa catgccactt cgcttgaaaa aattgcgatg
      481 caagcagctg cctttgatcc tgaacagcgt tatcaatcca ttcaagattt caggacagcc
      541 gtcaaaaacg actcacttgg cccaagctac gtctctgaat tatccgattt tactgagtta
      601 gataattttt ctactgaatc tgactgggaa aatgtatccg cggattacga aaaggacttt
      661 gttccatggt ataaacatat tcccggtttt agaacaggga caccttggaa aatgattgtc
      721 ggcgtattag gttatatatt cttgctattt ggtttattca ccccgccaac cgagggcgtc
      781 aaaatgtcgc caatagtaaa cttttttaac aatttctttc ttatcgttcc tgcttttgtc
      841 atttttacta atctttgtgg tatttggtcc aaattacctt tacttaaatc atcctctcct
      901 ggtacaagaa aagcaggtat tgtcatttat atta
//
LOCUS       DASEAA010000342          930 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.345, whole genome shotgun sequence.
ACCESSION   DASEAA010000342 DASEAA010000000
VERSION     DASEAA010000342.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 930)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.345"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..203)
                     /locus_tag="U0342_003062"
     CDS             complement(<1..203)
                     /locus_tag="U0342_003062"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464937.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2424377.1"
                     /translation="MNKQNELQSVLSNKKKVLIIGPNGAGKSTFAAKLGKCYDFEVCH
                     LDKLFWLENWNAVEKADFEDKVNG"
     gene            complement(243..470)
                     /locus_tag="U0342_003063"
     CDS             complement(243..470)
                     /locus_tag="U0342_003063"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464936.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2424378.1"
                     /translation="MAIVLRLDRVMADRKMSLNQLSQEVGVANVNLSKIKTGKVSAIR
                     FSTLNEICRVLNCQPGDILEYVADDSLETEL"
     gene            complement(485..>930)
                     /locus_tag="U0342_003064"
     CDS             complement(485..>930)
                     /locus_tag="U0342_003064"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464935.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="DUF2975 domain-containing protein"
                     /protein_id="HEM2424379.1"
                     /translation="FFSSKNIMMNKLESDTVFYFQTEFFSGVENQQYNQIEEWILVVI
                     AAFSSVLIALLLWTASMIFKDLAAEFMPFSDLTVNRLRRIAGILLVYSLAPQIMYSVL
                     HTVLIPGYSITFGLNMSFFFAIIFYCLTEIFRYGASLQKESDETL"
BASE COUNT          321 a          184 c          123 g          302 t
ORIGIN      
        1 ccgttcactt tatcctcgaa atccgctttt tcaactgcat tccaattctc cagccaaaaa
       61 agcttatcta aatgacagac ttcaaaatca taacattttc caagttttgc agcaaaagtt
      121 gacttaccag cgccgttagg accaattatt aatacttttt tcttgttaga taatacagat
      181 tgcaattcat tttgtttatt catttacgcg ctccttatct aagtatggct aatctaacgc
      241 atttaaagtt cggtttcaag agaatcatcc gctacatact ccaaaatatc acctggttgg
      301 cagtttaaga ctctacatat ttcatttaga gtagaaaaac gaatggcgct tactttacca
      361 gtttttattt tggataagtt tacatttgct acaccaactt cttgggataa ctggtttaaa
      421 gacattttac ggtcggccat tactcgatct agcctcaata caattgccat ttttttcgct
      481 ccaatcataa agtttcgtcg gattcttttt gcaaagatgc tccataacga aatatttcag
      541 ttaaacaata aaaaataatt gcaaagaaaa atgacatatt caaaccaaaa gtaatgctat
      601 aacccggtat gagtactgta tgtaaaacag aatacataat ttgcggtgct agcgaataga
      661 caagcaatat ccctgcaatt ctccgcaatc tgttaacagt aagatcgcta aaaggcataa
      721 actcagcagc taaatcttta aaaatcatac ttgcggtcca tagtagcaat gctattaaaa
      781 cactagaaaa agcagctata actactaaaa tccattcctc aatttgatta tattgttgat
      841 tttccacacc agaaaaaaat tctgtttgaa aataaaatac agtatccgat tctaatttat
      901 tcatcataat atttttacta ctaaaaaact
//
LOCUS       DASEAA010000343          922 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.346, whole genome shotgun sequence.
ACCESSION   DASEAA010000343 DASEAA010000000
VERSION     DASEAA010000343.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.346"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            141..214
                     /locus_tag="U0342_003065"
     tRNA            141..214
                     /locus_tag="U0342_003065"
                     /product="tRNA-Thr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:175..177,aa:Thr,seq:cgt)
     gene            224..307
                     /locus_tag="U0342_003066"
     tRNA            224..307
                     /locus_tag="U0342_003066"
                     /product="tRNA-Tyr"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:258..260,aa:Tyr,seq:gta)
     gene            319..390
                     /locus_tag="U0342_003067"
     tRNA            319..390
                     /locus_tag="U0342_003067"
                     /product="tRNA-Gln"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:351..353,aa:Gln,seq:ttg)
     gene            400..472
                     /locus_tag="U0342_003068"
     tRNA            400..472
                     /locus_tag="U0342_003068"
                     /product="tRNA-Lys"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:433..435,aa:Lys,seq:ttt)
     gene            complement(588..>922)
                     /locus_tag="U0342_003069"
     CDS             complement(588..>922)
                     /locus_tag="U0342_003069"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465655.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424380.1"
                     /translation="QEGWLYLYLNNRNHENVLIEKCNLMRGNGENRLKESLEQLGRYF
                     GNEKEGVLRIPKCFTKKIIANYSNLSVRSVTHLCRKLVESGFLAENSKSFVLLDKYGR
                     IEPEVTTI"
BASE COUNT          280 a          181 c          159 g          302 t
ORIGIN      
        1 acaacttcaa aaatattttt cacttttttt aaaaaaaagc tggtaaaatt gattaaaatg
       61 ttatatcatg tattagtatc tgttttgaag aattaattat gcaagagatt tcgatttgcc
      121 agcagtgaga gcgattcttc gccgacttag ctcaatctgg tagagcaact gaatcgtaat
      181 cagtaggttg cgggttcaat tcctgcagtc ggcattttat agcggagggg tagcgaagtg
      241 gctaaacgcg gcggactgta aatccgctcc ttcgggttcg gtggttcgaa tccactcccc
      301 tccaccattt tctattattg ggctatagcc aagcggtaag gcaacggatt ttgattccgt
      361 catgcgctgg ttcgaatcca gctagcccag tcatatttag agccgttagc tcagttggta
      421 gagcatctga cttttaatca gagggtcgct ggttcgaacc cagcacggct catcataaaa
      481 aaacaagcaa agaaaatact ttgcttgttt ttttatgatg taattttttc tccctaagaa
      541 aaaagataaa ctaaaaatta aatagtttat cttttactca agtataatta tatcgtagtt
      601 acttctggtt ctattcttcc gtatttatcc aacaaaacaa aagacttaga attttctgct
      661 aaaaaacctg attcaaccaa ctttctacaa agatgagtta ctgaacgcac cgataagtta
      721 gaataattag caataatttt ctttgtgaaa cattttggaa tgcgtagcac gccttccttt
      781 tcatttccaa aatatcttcc cagctgctct agagactctt tcaaacgatt ttctccatta
      841 ccacgcatta aattacattt ttcaattaaa acattttcgt gatttcgatt attaagatat
      901 aaatagagcc acccctcttg ca
//
LOCUS       DASEAA010000344          922 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.347, whole genome shotgun sequence.
ACCESSION   DASEAA010000344 DASEAA010000000
VERSION     DASEAA010000344.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 922)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.347"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            3..764
                     /locus_tag="U0342_003070"
     CDS             3..764
                     /locus_tag="U0342_003070"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726408.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424381.1"
                     /translation="MDEFKLDKTISKAIVDGTLKGYLQYLEERKSKKETMNVSGAYAW
                     TKGNHIDDQVSKIGQMKNVQFKIEKAGYTWEYLQFTVSENSEDYMVIVKNSRRVQKSF
                     DEQKKKTNEDNYLVNLADINTPVLKNISRNFVIQPEQIQLELNDPEEIKAVIEGTQLN
                     VSKKYSRFYIVTYEIHDETKFVESIKLTMPNRQTMTLELIEDLSYLIQGNEYEITDED
                     VEPIKNEKAPENTIFSGDTNSFGYSIPEEKEESGN"
     gene            797..>922
                     /locus_tag="U0342_003071"
     CDS             797..>922
                     /locus_tag="U0342_003071"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726409.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2424382.1"
                     /translation="MFFGEKLRSVRELNGLSRKELADKLNLSEQAIWQYENQYTVP"
BASE COUNT          384 a          115 c          164 g          259 t
ORIGIN      
        1 agatggatga atttaaatta gataaaacaa ttagtaaagc aatagttgat ggaactttaa
       61 aaggttattt acagtatctt gaagagagaa aaagcaaaaa agagacaatg aatgttagtg
      121 gcgcttatgc ttggacaaaa ggaaatcata tcgatgacca agtttctaaa attggacaaa
      181 tgaaaaatgt ccagtttaaa atcgaaaaag ctggctacac atgggaatac ttgcagttta
      241 cagttagcga gaattcagaa gattatatgg ttatcgtaaa aaattctaga agagtacaaa
      301 aatcttttga tgagcaaaaa aagaaaacaa atgaggataa ttatttagtg aatttagcag
      361 atataaacac acctgtatta aagaatatct cccgaaactt tgttatccaa ccagagcaga
      421 ttcaactcga attaaatgat cctgaagaaa taaaggcagt aattgaagga actcagctga
      481 atgtaagtaa aaaatattct cgattttata tagtaactta tgaaattcat gatgagacta
      541 aatttgttga atctattaaa ttaactatgc caaaccgtca aacgatgact ttagaactta
      601 ttgaagattt aagttatctt atccaaggta atgagtacga aattaccgat gaagatgtag
      661 aaccaattaa aaatgaaaaa gctccagaaa atacaatctt ttcaggcgat acaaattcgt
      721 ttggttattc aattcctgaa gaaaaagaag aatctggaaa ctaacttttt aacaaataag
      781 caaggatgtg attataatgt ttttcggaga gaaattaaga agtgtcaggg aattaaatgg
      841 tctctccaga aaggaacttg ctgacaaatt aaatttaagt gaacaagcaa tttggcaata
      901 tgaaaatcaa tatactgttc ca
//
LOCUS       DASEAA010000345          904 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.348, whole genome shotgun sequence.
ACCESSION   DASEAA010000345 DASEAA010000000
VERSION     DASEAA010000345.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 904)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 904)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..904
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.348"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>904
                     /locus_tag="U0342_003072"
     CDS             <1..>904
                     /locus_tag="U0342_003072"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465791.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="UvrD-helicase domain-containing protein"
                     /protein_id="HEM2424383.1"
                     /translation="DADIDPNFRLIEPIESSMIRDEVLENLLEQEYSIENNEPFFHLV
                     ESFTGDRSDAELHALISKLYDFSRANPDPNIWLEEMVDFYNTEETTSITELPYFPIIK
                     EDIELRVNQAKNYLLNAIDYANENNGPVPYLATLENDLAQIEAITELSWNSWGQLKKA
                     IESIDFKRIPTLKNKSDYDEEYVEEAKKFRDAAKKEIKNIATDWFSREEINYLSDLEK
                     MKPDIKTLSRLVKKFAENFFEEKQQRGVLDFNDLEHLALKILLKDNEASEVAKNYQKQ
                     FKEVLIDEYQDTNMVQETILRLVTN"
BASE COUNT          366 a          110 c          164 g          264 t
ORIGIN      
        1 tgatgcagat attgatccaa attttcgctt aattgagcca atcgaaagta gtatgattcg
       61 tgatgaggtt ctagaaaatt tgcttgaaca agaatacagt attgaaaaca atgagccgtt
      121 ttttcacttg gtagagtctt ttactggaga taggtcggat gctgagcttc acgcgttaat
      181 atctaagcta tatgatttct caagagcaaa tccagatccg aatatatggt tagaagaaat
      241 ggtggacttt tataatacag aagagactac ttcgattaca gaattacctt attttccaat
      301 tattaaagaa gatattgaat taagagttaa tcaagctaaa aattatttat taaatgcgat
      361 agattatgca aatgaaaata atggacctgt accttattta gctacgttag aaaatgattt
      421 agctcaaatt gaagcaataa cagaattgag ctggaatagc tggggacagc tgaaaaaggc
      481 tattgaaagt attgatttta agcgtattcc aacactaaaa aataaaagtg attacgatga
      541 agaatatgta gaggaagcaa agaaatttcg agatgcagca aaaaaagaaa ttaaaaatat
      601 cgcaactgat tggttttcac gagaagaaat aaattattta tctgacttag aaaaaatgaa
      661 accagacatc aaaaccttga gtagattagt gaaaaaattt gctgaaaatt tctttgaaga
      721 aaaacagcaa agaggagtat tggattttaa tgatttagaa cacttagcat taaagatttt
      781 attaaaagac aatgaagcat cagaagttgc taaaaactat caaaaacaat ttaaagaagt
      841 attaattgat gaatatcaag atactaatat ggtgcaagaa actatcctac gactagtaac
      901 taat
//
LOCUS       DASEAA010000346          876 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.349, whole genome shotgun sequence.
ACCESSION   DASEAA010000346 DASEAA010000000
VERSION     DASEAA010000346.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 876)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.349"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..380)
                     /locus_tag="U0342_003073"
     CDS             complement(<1..380)
                     /locus_tag="U0342_003073"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726066.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="JAB domain-containing protein"
                     /protein_id="HEM2424384.1"
                     /translation="METILEVVRIEQIIREAEEGVDYIIRSPEDGAKIASRFIGRDDR
                     EVFFVMCLNTKNNVVAVHRCHVGSLNSSIVHPREVFKSAILNNVASVILAHQHPSGDI
                     KPSMEDINVTKRLVEAGKLLGIEVL"
     gene            complement(690..>876)
                     /locus_tag="U0342_003074"
     CDS             complement(690..>876)
                     /locus_tag="U0342_003074"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726067.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424385.1"
                     /translation="DILTDKSKIEEDIEHIFVGNEIHHGQAEPREMIEGEFGPVGFKM
                     DWTNYLKESVINQIKNK"
BASE COUNT          260 a          184 c          132 g          300 t
ORIGIN      
        1 agcacttcaa tgcctagtag ctttccagct tcgactaatc tcttagttac gttaatatct
       61 tccatcgatg gttttatgtc accacttgga tgctgatgtg caagaatgac acttgctaca
      121 ttattaagta ttgctgattt aaatacctcc cgtggatgaa caatcgagga atttaacgaa
      181 ccaacatgac aacgatgaac tgcaacaaca ttatttttcg tatttaaaca cataacaaaa
      241 aacacttcac gatcatcacg accaataaag cgagacgcta tctttgctcc gtcttctggg
      301 ctacgaatga tataatcaac accttcctct gcttctctaa taatttgttc gatgcgaact
      361 acttctaaaa tggtttccat ctagatcaac ctctctattt ttttgacctt tttggtcacc
      421 acagagagaa tcttcgcatc gattaatgtc aagtggctta agtagcaaag ctatcgagtg
      481 attcgtatat gttttgatga agcccaatga attagggtgc gttaaaagcg ttaattgctt
      541 tcttacgcac ccttatccta cttggctgac tcataacatc cgaagaacga agacccttta
      601 cttaatcgat aattcgtcta tgctttacag acgaattaga agattataat tggtagagct
      661 gaaaaggaaa aaaacaaaat gtagcctatt tacttgtttt ttatttgatt gattacactt
      721 tcttttaaat aatttgtcca atccatttta aagcctactg gaccaaattc tccctctatc
      781 atttcccttg gctctgcttg accgtgatga atttcattac ctacaaatat gtgctctata
      841 tcttcttcta ttttactttt atcagttaat atatcg
//
LOCUS       DASEAA010000347          875 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.350, whole genome shotgun sequence.
ACCESSION   DASEAA010000347 DASEAA010000000
VERSION     DASEAA010000347.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.350"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..600)
                     /locus_tag="U0342_003075"
     CDS             complement(<1..600)
                     /locus_tag="U0342_003075"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724624.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424386.1"
                     /translation="MSIVVEQLVMKDTGERWGSPYLLEQLKINLANTSADFVIVCSKS
                     DQNILSQIQDYLARFADNMVGADIHLFNQNPLFVQHLRKLPNEDSYEMTDTLQFLEET
                     IPNPTSTYLERDPHMLLEEVGQYILYNVAFLKAYFEKAEITHELINIFHKANMVWKHS
                     VLEETKKNEEKMKVPDNYLINDMVDCWSYYRNLENKYTSL"
     gene            complement(597..>875)
                     /locus_tag="U0342_003076"
     CDS             complement(597..>875)
                     /locus_tag="U0342_003076"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003738654.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="CDP-glycerol glycerophosphotransferase family
                     protein"
                     /protein_id="HEM2424387.1"
                     /translation="EFSLMNKPIYFFAYDIDDYLDERGFYFDYKATIPGEVFKDTPSL
                     IESIKTGKYNYDELEVFKKKFVGSLDGNSTKRFVETYIVQANEEVKDL"
BASE COUNT          286 a          174 c          115 g          300 t
ORIGIN      
        1 taaagaagta tacttgtttt ccaaatttcg ataatacgac caacaatcaa ccatatcatt
       61 gatcaagtaa ttatctggaa ctttcatttt ctcttcgttt ttcttcgttt cttccaaaac
      121 actatgtttc caaaccatat tggctttatg aaaaatatta attaattcat gcgtaatctc
      181 tgccttttca aagtacgctt tcaaaaaagc aacattatac aaaatatatt gccccacttc
      241 ttcaagcaac atatgtggat cacgttccaa ataagtgcta gttggattcg gaatcgtttc
      301 ctctaaaaat tggagtgtat ccgtcatttc ataactatct tcatttggca attttcgtaa
      361 atgttgtaca aaaagagggt tttgattaaa taaatggata tcagcaccga ccatattatc
      421 agcgaaacga gcgagatagt cttgtatttg cgaaagaata ttttgatcgc ttttcgaaca
      481 aacaataaca aaatctgctg atgtattagc aagatttatc tttagttgct ctaacagata
      541 aggacttccc catctctcac cagtatcttt cataacgagt tgttccacta caatactcat
      601 aaatctttca cttcctcatt tgcttgaaca atataggtct ctacaaaacg cttcgttgaa
      661 ttaccatcta agcttccaac aaatttcttt ttaaagactt ccagttcgtc gtaattatat
      721 tttcccgttt taatcgactc aatgagcgac ggcgtatctt tgaaaacttc accaggaata
      781 gttgctttgt aatcgaaata aaatccgcgt tcatccaaat aatcatcaat atcatatgca
      841 aagaaataaa ttggcttatt cattaaacta aattc
//
LOCUS       DASEAA010000348          875 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.351, whole genome shotgun sequence.
ACCESSION   DASEAA010000348 DASEAA010000000
VERSION     DASEAA010000348.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 875)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.351"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..581)
                     /locus_tag="U0342_003077"
     CDS             complement(<1..581)
                     /locus_tag="U0342_003077"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464740.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycoside hydrolase family 73 protein"
                     /protein_id="HEM2424388.1"
                     /translation="MKYRKLSKKKKQKRLIGIAGILLLVILVGVIASVVRQQYLIMTA
                     PEPDPAFHSKEQNFLNELSPRAQEIQEKHGILTSITLAQAILESDWGQSGLAQKGNNL
                     FGVKGKSPQPMVTMTTKEFVDGKWIEINANFRKYKDWNESLDSHAELFLKGTSWNKDK
                     YNGVIAADDYKKAAQELQSAGYATDPDYAEKLI"
BASE COUNT          252 a          160 c          136 g          327 t
ORIGIN      
        1 ttgattaatt tctccgcata atctgggtca gttgcatagc cagctgattg taattcttgc
       61 gcggcttttt tataatcatc tgcagcaatt actccattat atttatcttt attccaagaa
      121 gtgcccttca aaaaaagttc agcgtgcgaa tcgagtgact cattccagtc tttatatttt
      181 cggaaattag cattaatttc aatccattta ccatcaacaa attctttcgt tgtcatcgtc
      241 accattggtt gtggcgattt tcctttgaca ccaaatagat tgttaccttt ttgcgctaaa
      301 ccgctttggc cccagtctga ttcgagaatg gcttgagcga gtgtaatact cgttaagata
      361 ccgtgctttt cttgaatttc ttgtgcacgt ggcgaaagtt catttaaaaa gttttgttct
      421 ttggaatgaa atgctggatc cggttctggt gcagtcataa ttaggtattg ctgtctaaca
      481 actgatgcaa tgacacctac tagaattact agaagtaaaa ttcccgctat tccaattagc
      541 ctcttttgtt tcttcttttt agataatttc ctatatttca gatgtcgtca cgcctttctg
      601 tctacgaatc ccttgatggt actagaatac gttactttca ttacaattgc aatccatcta
      661 ggggtctatt ttagtgaatt taagaaatct ttaacattta tatgattcag caaaaatatt
      721 gatttatagc caatgaatcc gcaaatgata ttaataattc ttcgttttgt aacatttgcc
      781 atcatttagt catataaaaa taaaatgatt tatgaaaaat atcatttact aagaaaaaaa
      841 gcgtttttct tctatatata atagtaaatc ttatc
//
LOCUS       DASEAA010000349          873 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.352, whole genome shotgun sequence.
ACCESSION   DASEAA010000349 DASEAA010000000
VERSION     DASEAA010000349.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 873)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.352"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..442)
                     /locus_tag="U0342_003078"
     CDS             complement(<1..442)
                     /locus_tag="U0342_003078"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014601818.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="RNA-directed DNA polymerase"
                     /protein_id="HEM2424389.1"
                     /translation="MKTLKNIEDRKDLADYLNIPIKRLTYILYIKRTENLYYSFEIPK
                     KSGGVRNIDAPKSELKALQKKLAASLTKYQEILQKSKRKAPNISHGFEKGKSIISNAK
                     IHRNKKIVYNLDLENFFESFHFGRVRGFFEKNKDFELSTEVATII"
BASE COUNT          285 a          152 c          114 g          322 t
ORIGIN      
        1 caattatcgt tgctacttct gtagatagtt caaagtcctt atttttttca aaaaagcccc
       61 taactcgtcc aaagtgaaag ctttcaaaaa aattctccaa atctaggtta tacacaattt
      121 ttttatttct atggatttta gcatttgaaa ttatactttt tcctttctca aatccatgag
      181 aaatatttgg tgctttgcgt ttactttttt gtaaaatttc ctgatattta gttaatgaag
      241 cagccaactt tttctgtaat gctttcaatt cactttttgg agcatcaata tttcgaactc
      301 cgccactttt tttgggaatt tcgaacgagt agtacaaatt ttctgttctt tttatgtaaa
      361 gtatatatgt taatcttttt ataggtatat taagatagtc agctaagtct tttctatctt
      421 ctatattttt taaagttttc atcctgtctt ctccttaaat tatacgtgtg gctactcctt
      481 acgcagggcg cacgttactc ctgtattact tttagcaggt aagtttagag gtgagcaaag
      541 ttcccaccgt tttagtcaat acttgcgaaa cacaagtaca caatctagcc acacgcttat
      601 ataattatag caaaacaaaa cggcacttac aattaaatct gaagtgcttt tcacctatca
      661 aatttataaa ctatttataa attgatgtgg aataaagttt ttatactaaa aaaattaaat
      721 ctcttctatc ataacaattc taagttccat gttacgaatt gtaaaaaaaa agcagaaata
      781 taactcgaaa acattcataa tcgattatga aaatatataa gtcgacagcc taaataaaga
      841 aaggcgttcc tacgagaacg cctttcaaca tta
//
LOCUS       DASEAA010000350          863 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.353, whole genome shotgun sequence.
ACCESSION   DASEAA010000350 DASEAA010000000
VERSION     DASEAA010000350.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 863)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.353"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..94
                     /locus_tag="U0342_003079"
     CDS             <1..94
                     /locus_tag="U0342_003079"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465075.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="prepilin peptidase"
                     /protein_id="HEM2424390.1"
                     /translation="LILNKVKKNKQVPFVPYIYVSFLLISILIK"
     gene            106..780
                     /gene="radC"
                     /locus_tag="U0342_003080"
     CDS             106..780
                     /gene="radC"
                     /locus_tag="U0342_003080"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465074.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DNA repair protein RadC"
                     /protein_id="HEM2424391.1"
                     /translation="MLIHEISENEKPREKLQNYGIEALSSSELVALIIETGTKNESVL
                     TIANRIIMKFKNVGEMQYASIEEFQLVNGIGIAKASKIMAAIELGRRIGIVTEQEEVV
                     VRCPEDAVKLVMPELAFLFQEHFHCLFLNTKNQVIYRQTIFVGGLNASIVHPREVFRL
                     ALRKSAASIMCFHNHPSGDPTPSSEDLLVTKRLAEAGNIVGITLLDHIIIGKNKYISL
                     KEKGYF"
BASE COUNT          292 a          133 c          171 g          267 t
ORIGIN      
        1 attgatatta aataaagtga agaaaaataa gcaagttcca tttgttccgt atatatatgt
       61 ttcctttctg ctgattagta ttttgataaa ataggagctg ttcttatgtt gatacatgaa
      121 atatcagaga atgaaaaacc acgcgaaaag ctacagaatt atgggataga agcactttca
      181 tcttcggaat tggttgcttt aattattgaa acagggacta aaaatgagtc agttttgacg
      241 atagctaatc gaatcatcat gaaattcaaa aacgtgggcg aaatgcaata tgcttctata
      301 gaagaatttc agttagttaa tggtatcgga atagcaaaag cttctaaaat catggctgcg
      361 attgaacttg gaagacgtat cggcatcgta acggagcagg aagaagtggt tgttaggtgt
      421 cccgaagatg cggtaaaact tgtaatgcca gagcttgctt ttctttttca agaacatttc
      481 cattgtctat ttttaaatac caaaaaccaa gtaatatatc ggcaaacgat ttttgttggt
      541 ggtctgaatg cttccatcgt tcatcctaga gaagttttta gattagcgct caggaaatca
      601 gcagcatcaa tcatgtgctt tcacaaccat ccatctggtg atccgactcc ttctagtgaa
      661 gacttgcttg taacaaaaag gttagctgaa gctggtaata ttgtcggaat taccttacta
      721 gatcatatta tcattggcaa gaataagtat attagtttga aagaaaaagg ttacttttaa
      781 atcaagaata ctgttcacaa aatgtctaca gacaacgttt gctaccttat gctaaagtga
      841 gtaccaataa aatgtaaagg tgg
//
LOCUS       DASEAA010000351          861 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.354, whole genome shotgun sequence.
ACCESSION   DASEAA010000351 DASEAA010000000
VERSION     DASEAA010000351.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 861)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.354"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            364..594
                     /locus_tag="U0342_003081"
     CDS             364..594
                     /locus_tag="U0342_003081"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glycosyltransferase"
                     /protein_id="HEM2424392.1"
                     /translation="MKQCPVCENYTIEANYDICEVCYWEYDVVAQEYPDEIIGANNIS
                     LKQAKINYAKFCAVEEKYITLVRKPRQDELPE"
     gene            673..>861
                     /locus_tag="U0342_003082"
     CDS             673..>861
                     /locus_tag="U0342_003082"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003765208.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424393.1"
                     /translation="MEYEQMADSLAYGEEYNFYYKNEEYWLSKNREGHYLTKVSDGET
                     QEFRTSEDLLGTARINGKL"
BASE COUNT          336 a           91 c          179 g          255 t
ORIGIN      
        1 taaaaaacac tccacatctc aattagcgtc gtaaaagtag atccttgata accttatttt
       61 ttagaaagta cggaatagaa aaatgaaatg atttgagcac tttaacaaat ttaattatga
      121 gctttttgga aaaatattaa tggataaggt attggatgta gggtttttca caacaagtgg
      181 attattggaa ggttatgaac atttagtagg gtattatatt ttaggtatga ttctaaaaca
      241 aatgaatttg ggattataaa cgagtatgga tctatatcta catatttcaa acctaatgct
      301 ggattaaaat attgggagaa acaaattgat ttatattatc cgaaatgatg aggaggaata
      361 actttgaaac agtgtccagt ttgtgaaaat tatacgattg aagctaatta cgatatttgc
      421 gaagtatgct actgggaata tgatgtggta gctcaagagt atccggatga aattatagga
      481 gctaataata tttcgttaaa acaagcaaaa ataaattatg cgaaattctg cgcagtagag
      541 gaaaaatata ttacacttgt tcgaaaaccg agacaggatg aactaccgga gtgattgaac
      601 ggatagaggg agtttaaagt aatgtgcttt tttaataaat agagaacctg tttctgaaag
      661 aaggaaagaa gcatggaata tgaacaaatg gctgatagtt tagcatatgg tgaggaatat
      721 aatttttact acaaaaatga ggaatattgg ttaagtaaaa atcgggaagg acattactta
      781 acgaaagtat ccgatggaga aacacaagaa tttaggactt cagaagactt attaggaaca
      841 gctagaataa atggaaaact t
//
LOCUS       DASEAA010000352          858 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.355, whole genome shotgun sequence.
ACCESSION   DASEAA010000352 DASEAA010000000
VERSION     DASEAA010000352.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 858)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.355"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..858)
                     /locus_tag="U0342_003083"
     CDS             complement(<1..858)
                     /locus_tag="U0342_003083"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464360.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rgg family transcriptional regulator"
                     /protein_id="HEM2424394.1"
                     /translation="MVAYGELIREVRLSKGLTQKEVYTGVISKSYAIGFEKGKHDITL
                     VLFEEILERVMLSSDEFFFMNRGYSLAEEDNFWYKFANAANQKSLADLQELYQEVLQQ
                     TGDRANLRKAIVHSRMEINEQFLLNNRFDVSIVSEKDKAVIQTYLWKVQSWTLEEIRI
                     FANSVDYFEEDVQIYFFQLVLKSLEKYKHYDRGKKVFSTLLSNIIEELITRNQLEYAA
                     QLLEILHELSSTHDCAFYRIMHNYYQGLIWMKNDQVEQGLKESKSAIRILDVLDYKSL
                     AQLYNTLLQQ"
BASE COUNT          261 a          157 c          126 g          314 t
ORIGIN      
        1 ctgttgaagt aatgtattat aaagttgtgc aagggatttg taatccagta catctaaaat
       61 tcgaatggca cttttagact cttttaagcc ttgttcgacc tggtcatttt tcatccagat
      121 taagccttga tagtaattat gcataatccg gtaaaaagca cagtcatgcg tagaagacag
      181 ttcgtgcagt atttctaata attgcgcggc atattctaat tgattacggg taattagttc
      241 ttcaattata ttggatagaa gcgtggaaaa tacttttttg ccacgatcgt aatgtttata
      301 tttttcgagt gacttcaaga ccaattgaaa aaaataaatt tgtacatctt cttcaaaata
      361 gtccactgaa ttagcgaaaa tccgaatttc ttctagtgtc catgattgga ctttccacaa
      421 atacgtttgg ataactgctt tatctttctc agaaacaata ctaacgtcaa atcgattatt
      481 taatagaaat tgttcattaa tttccattct tgagtggaca attgcttttc ttagattggc
      541 tctatctcct gtttgctgca acacttcttg gtataattct tgtaagtctg ccaaactttt
      601 ttgattagct gcatttgcaa atttgtacca aaaattgtct tcctccgcta aagaataacc
      661 tctattcata aagaaaaatt catccgaact tagcattact cgttctaaaa tttcttcaaa
      721 tagtactaat gtaatatcat gttttccttt ttcaaaacct attgcatatg attttgaaat
      781 tacccctgta taaacttctt tttgcgtcaa tccttttgaa agtcgtactt cgcgaattaa
      841 ctcaccatac gcaaccat
//
LOCUS       DASEAA010000353          851 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.356, whole genome shotgun sequence.
ACCESSION   DASEAA010000353 DASEAA010000000
VERSION     DASEAA010000353.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 851)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.356"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            150..599
                     /locus_tag="U0342_003084"
     CDS             150..599
                     /locus_tag="U0342_003084"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724865.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2712 domain-containing protein"
                     /protein_id="HEM2424395.1"
                     /translation="MIIIKNFASKNIRLIMALVIGVLVFAPVFHSKAADNNIGFDFKL
                     KPNCANSGSSSRYRETSSVNNPWKVRLDNSTEGKGTIASFWLGTYNKNKNAVQGSTIM
                     NVKQGAKTRYCGAYKVANKNTTYLAAENNNYNSKTYYVDGIWDEETW"
     gene            670..>851
                     /locus_tag="U0342_003085"
     CDS             670..>851
                     /locus_tag="U0342_003085"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424396.1"
                     /translation="MKNQFTYLINNKTTQGMFILILFIPCIEIVQLYIMLKPDAVNIH
                     PAFAFFLAGSSRGHIT"
BASE COUNT          304 a          138 c          136 g          273 t
ORIGIN      
        1 ttggacaaat gatttttcgt aaattacttc taaataagca gacgattatg caaacaattt
       61 accgttttct gtaaattcaa aaaacaaatt gaccagctct ttatattgtg atacgcttaa
      121 caagtggcgt tattctaata gaataggaga tgattatcat aaaaaatttc gcatcaaaaa
      181 acattagact aattatggca ctggttattg gagtattggt ttttgcacct gtttttcatt
      241 caaaagccgc tgataataac attggtttcg attttaaact caaaccaaat tgcgctaact
      301 cagggtcaag ctcaaggtat agagagactt cttctgtaaa taacccttgg aaagttcgcc
      361 tcgataactc aacagaagga aagggtacaa ttgcttcttt ttggctaggt acatataata
      421 aaaacaagaa tgctgtacaa ggctcaacaa taatgaatgt taaacaaggt gcaaaaacac
      481 gttattgcgg cgcttataaa gtagctaata aaaatacaac ctatttagct gctgaaaata
      541 ataattataa ttccaaaaca tactatgtcg atggtatttg ggatgaggaa acttggtaat
      601 tattctaacc aggaaaggga tgtatttaac tccctttcct ttttaaaata acgaaacgga
      661 gtacataaaa tgaaaaatca gtttacctac ttaattaaca ataaaactac tcaagggatg
      721 ttcattttaa tcttatttat accttgtatt gaaatcgttc aattatacat aatgttaaag
      781 ccagatgcag ttaatattca tcctgctttt gcattttttc ttgcaggttc aagccgaggt
      841 catatcactc a
//
LOCUS       DASEAA010000354          846 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.357, whole genome shotgun sequence.
ACCESSION   DASEAA010000354 DASEAA010000000
VERSION     DASEAA010000354.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 846)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.357"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            132..>846
                     /locus_tag="U0342_003086"
     CDS             132..>846
                     /locus_tag="U0342_003086"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725825.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="trypsin-like serine protease"
                     /protein_id="HEM2424397.1"
                     /translation="MKKLRIFTLMLAFALFLLGGGIVAQAAEEAPIDEKIVGETVTND
                     GEEFIVDEISDLEDVNSTTGTLDTSDEVEVDLSGLTIENEEAVLTPGLKTIFGGDGRK
                     LVTNTTQYPYSTSAYLVMEFPNGKTYIGSGQLIGEDSVLTAAHCLYGKKDGGWAKKVT
                     VYPGYNGTKAPFGTAKARKMYVPKEWTKKEPSTEDYGVIKLDKNIGTKTGTMGLTTNT
                     SGAITISGYHGDKKGKLYTQ"
BASE COUNT          321 a          107 c          178 g          240 t
ORIGIN      
        1 caaaaatagc tactaagaaa attgacttat attgggaagt tttaaactaa tttaagtttc
       61 aacaatgcga tacaatcaag tgattttttg atatatttat ttgctaatag acaaaaaaag
      121 gagatgcaac tatgaaaaag cttagaatat ttactttgat gcttgctttt gctctatttt
      181 tattaggtgg aggaattgtt gcacaagcag cagaggaagc cccaatcgat gaaaagatag
      241 ttggggaaac ggtaacaaat gacggagaag agtttatagt cgatgagatt agtgatttag
      301 aagatgttaa ttcaacaacg gggacgttag atacatctga tgaagttgag gttgatttat
      361 caggattaac tattgaaaat gaggaagccg ttctaacccc aggtttaaaa acgatttttg
      421 gcggagatgg tagaaaactt gtaacaaata caactcaata tccatattca acgagcgctt
      481 accttgtaat ggaatttcca aatggaaaaa cttatatagg tagtggacaa ttgattggtg
      541 aagattctgt acttacagcc gctcattgtt tatatggtaa aaaagatggt ggatgggcaa
      601 aaaaagtgac tgtatatcct ggatataatg gcacgaaagc tccttttgga acagcaaaag
      661 caagaaaaat gtatgttcca aaagaatgga caaaaaaaga accttctaca gaagattatg
      721 gagttattaa attagataaa aatattggga caaaaactgg aacaatgggg ttaacaacta
      781 atacatctgg tgcaattact attagtggtt atcatggtga caaaaaaggg aaattgtaca
      841 ctcaaa
//
LOCUS       DASEAA010000355          828 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.358, whole genome shotgun sequence.
ACCESSION   DASEAA010000355 DASEAA010000000
VERSION     DASEAA010000355.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 828)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.358"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            46..237
                     /locus_tag="U0342_003087"
     CDS             46..237
                     /locus_tag="U0342_003087"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012951520.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2424398.1"
                     /translation="MSVEHRRFAVAIYAKLKAINMKQSDLAKMLGISNPYLSDIINGK
                     RDASKVRKEIAEILEIDVD"
     gene            256..444
                     /locus_tag="U0342_003088"
     CDS             256..444
                     /locus_tag="U0342_003088"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424399.1"
                     /translation="MIIKLDKGSYYSQQELLKQLSIGYETLRKLEIKGELSARKLGKT
                     IYYQGADVLDSWDRMLKR"
     gene            469..654
                     /locus_tag="U0342_003089"
     CDS             469..654
                     /locus_tag="U0342_003089"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003730997.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424400.1"
                     /translation="MNDEIQDLIVEIRKYDPNYIPKSVGKYLLVELQSRHLDHQIKYK
                     KRPKYKHRFANSIERHW"
BASE COUNT          341 a          105 c          159 g          223 t
ORIGIN      
        1 cagtatgcta aataattagc taataaggta gaaaggagca aacacatgtc agtagaacat
       61 cgacgtttcg ctgttgcgat atacgcaaaa ctaaaagcaa taaatatgaa acaatctgat
      121 ttagcaaaaa tgttaggtat tagcaatcct tatttatcag atatcataaa cggcaaaaga
      181 gacgcatcga aagttagaaa agaaattgcg gaaattttag aaatagatgt tgattagaaa
      241 ggagattgac attaaatgat catcaaatta gacaagggca gttattattc gcaacaagag
      301 ttacttaaac aattaagcat tggttatgaa acattaagga aacttgaaat caaaggagaa
      361 ctttccgcac gtaaactagg aaagactatc tactatcaag gtgcagatgt tctagattct
      421 tgggacagga tgctaaagag gtgaatatga atataagaag gtgtgaagat gaacgacgaa
      481 attcaagatt taattgttga aatacgaaaa tacgacccaa attacattcc gaaatcggtt
      541 ggaaaatatt tgctagttga acttcaatca aggcatttag atcatcaaat taaatataag
      601 aaaagaccta agtacaagca tagattcgcg aattcgattg agcggcattg gtaaaagaaa
      661 aacccacagc tataaatagt aagttagagc ttactaaaac cgtgagttac aaaataatat
      721 ttaaggtaat tatatcacag aaatggagat atgagaatga agaaattttt aaatgaacat
      781 gaaagtaagc tactagtatt tatgttttgt tttcaagtag gtgcatta
//
LOCUS       DASEAA010000356          826 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.359, whole genome shotgun sequence.
ACCESSION   DASEAA010000356 DASEAA010000000
VERSION     DASEAA010000356.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 826)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.359"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            10..>826
                     /locus_tag="U0342_003090"
     CDS             10..>826
                     /locus_tag="U0342_003090"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734746.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="glucosaminidase domain-containing protein"
                     /protein_id="HEM2424401.1"
                     /translation="MKIVMIPMLVVPMYGLTTVGGQLQDSLTGENSFVKEVEAATTAS
                     QQAFIDKIAPAAQASQEKYHLLSSITLAQAILESGWGKSGLATQGYNLFGIKGKYNGQ
                     SVIMTTSEYVNGEWIKIDAEFRKYPSWNESVTDHTLLLVNGTSWNKDLYKKVVDATDY
                     KVAAMELQKAGYATSPTYGASLIQVIENYDLAKYDVLYDKILTQKSTSGKATVTSPTG
                     NGVWTLPYKVKGVQSVSPASTYANKDIDLVSVATTKRGTYYQFKYNGKVVGWVD"
BASE COUNT          288 a          133 c          168 g          237 t
ORIGIN      
        1 aaaaagtgga tgaaaattgt aatgattccg atgctagttg ttccaatgta cggtttgaca
       61 actgttggcg gacaattaca agattcatta actggagaaa attcctttgt taaagaggtt
      121 gaagctgcaa cgacagcatc gcaacaagca tttatcgaca aaatagcacc tgctgcccag
      181 gcatctcaag aaaaatatca tctgttatct agtataactt tagctcaagc aattctagaa
      241 tctggttggg gaaaaagtgg acttgctaca caaggatata atttatttgg tataaaaggg
      301 aaatataatg gacaatcagt tatcatgaca acttctgaat atgtgaacgg tgagtggatt
      361 aaaattgatg ctgaattccg caaataccct agctggaatg aatctgtcac tgaccatact
      421 cttttattag tgaacggaac ttcttggaat aaagacttat ataagaaagt tgtcgacgca
      481 acggattata aagtagctgc aatggagctt caaaaagctg gatatgcaac ctctcctaca
      541 tatggtgcta gcttaattca agtaattgag aattatgatt tagccaaata tgatgtttta
      601 tacgacaaaa ttcttactca aaaatccact tccggaaaag caactgttac aagtccgact
      661 ggaaatggtg tatggacttt accgtataaa gtaaaaggag tgcaatctgt tagtccagct
      721 agcacatacg ctaacaagga tatcgattta gtatctgttg ctacaacaaa gagaggtacg
      781 tactatcaat ttaaatataa tggtaaagta gttggttggg tagatg
//
LOCUS       DASEAA010000357          810 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.360, whole genome shotgun sequence.
ACCESSION   DASEAA010000357 DASEAA010000000
VERSION     DASEAA010000357.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 810)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.360"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..220
                     /locus_tag="U0342_003091"
     CDS             <1..220
                     /locus_tag="U0342_003091"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424402.1"
                     /translation="GELIGKTDENGNVSLPPEVTLKVLIEYSTLSKAAFYRQRIHLLE
                     QEILKPHENTFIVQKKVASHYEDQLTSI"
     gene            238..>810
                     /locus_tag="U0342_003092"
     CDS             238..>810
                     /locus_tag="U0342_003092"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464077.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2424403.1"
                     /translation="MKFNWKVVLLFVLILALIVPVYSKAVETGKELPKSPELQDDKSS
                     TLKNVNTPKNLKASPLTIPANSTIADLFPDEGMAKTVANQLGRTENNNFQTPTKTDWK
                     VDDVVTEVELNRMWYLTSVATIGSIEGIQYLPNLYNVQLQFDDQCKDLSPFLKAPNGY
                     PQLYRLNINNGNISDISPLTELSAPTLKYID"
BASE COUNT          300 a          131 c          148 g          231 t
ORIGIN      
        1 gggagaactc attggtaaaa cggatgaaaa cggaaatgtt tcgttgccac cagaagtgac
       61 attgaaagtc ttaattgaat acagtacttt atccaaagca gctttttata gacaacgaat
      121 tcacttattg gagcaagaaa ttttaaaacc gcatgaaaat acttttattg ttcaaaaaaa
      181 agtagcaagt cattatgaag accagctaac tagcatttaa aaggagacat aaaaataatg
      241 aaatttaatt ggaaagtagt tctgctgttt gttttaattt tagcacttat tgttccggtt
      301 tattcgaagg ctgtagaaac aggaaaagag ttacctaaga gtccggaact acaagatgat
      361 aagtcatcta cgttaaaaaa tgtaaataca cctaaaaatc tgaaagctag cccgctaaca
      421 attccagcga atagcacgat agcagatttg tttcccgatg aagggatggc aaaaactgtc
      481 gcaaaccagc taggacgaac agaaaataac aattttcaaa cacctactaa aacggattgg
      541 aaagtggatg atgttgttac tgaggtagag ttaaatagaa tgtggtactt aacttcagtt
      601 gctactatag gaagtatcga aggcattcaa tatctaccca atctttacaa tgtacagtta
      661 cagtttgatg accaatgtaa ggatttgtct ccttttttaa aggcaccaaa tggatatcca
      721 cagttatatc ggttaaatat taataatggt aatatttcag atatttcacc tcttactgaa
      781 ctgagcgcac caacacttaa atatatagac
//
LOCUS       DASEAA010000358          801 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.361, whole genome shotgun sequence.
ACCESSION   DASEAA010000358 DASEAA010000000
VERSION     DASEAA010000358.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 801)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.361"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..260
                     /locus_tag="U0342_003093"
     CDS             <1..260
                     /locus_tag="U0342_003093"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463991.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424404.1"
                     /translation="EVTLSSGLSADGEIELQRVGAISDVITSSFKSNNSVVPMANPVI
                     GSFSGYAMEETEVSKIQIGNPQGDKKAGAYQTTLTFTAAFK"
     gene            288..593
                     /locus_tag="U0342_003094"
     CDS             288..593
                     /locus_tag="U0342_003094"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2424405.1"
                     /translation="MKRKLVLAMVLISFCGMFFLSPDRVQASQTVVEVFISEDDLDVS
                     EENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRRSKKKE"
     gene            668..>801
                     /locus_tag="U0342_003095"
     CDS             668..>801
                     /locus_tag="U0342_003095"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2424406.1"
                     /translation="MARIEYEEKIQKSLLVLYFRGSTIQSICREYGIPRYEFHKWMKL
                     "
BASE COUNT          278 a          121 c          181 g          221 t
ORIGIN      
        1 tagaggtgac attatctagt ggattatcag ccgatggaga gattgaatta caacgggttg
       61 gcgctatttc ggacgtaata actagtagtt ttaagagtaa taatagtgta gtacccatgg
      121 ctaatcccgt cattggaagc ttttcaggat atgcgatgga ggaaacagaa gtaagtaaaa
      181 ttcaaattgg aaaccctcaa ggagacaaaa aagctggagc atatcaaaca acgttaactt
      241 ttacagctgc ttttaaataa gaaattacga aaggagttgt gcatttcttg aaaaggaaat
      301 tagttctggc aatggtacta atcagctttt gtgggatgtt cttcttatcg cctgaccgtg
      361 ttcaagctag tcagacagtg gttgaggtgt tcatttcaga ggatgatttg gatgtcagtg
      421 aagaaaacat acaggaaatc cctaaaaaag aactggcagc ctcttcagat aaggataaca
      481 aacaacccat attacctaaa gcaggtgata cagtaactaa ctataccttg ttgggtttag
      541 tgctcgtcct tatttggttg ataatgcaaa gaaggagtaa gaagaaagaa taacccctat
      601 gacagcatcg taatgtagca agtaaaaaag gaaagaaaat ttctgtatta gataggaagt
      661 gataggtatg gctcgaatcg aatatgaaga aaaaattcaa aaaagcctac tggttttata
      721 ctttaggggg tctaccatac agtctatctg cagggagtat ggtattcctc gttacgaatt
      781 tcacaaatgg atgaagttac a
//
LOCUS       DASEAA010000359          798 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.362, whole genome shotgun sequence.
ACCESSION   DASEAA010000359 DASEAA010000000
VERSION     DASEAA010000359.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 798)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.362"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            150..386
                     /locus_tag="U0342_003096"
     CDS             150..386
                     /locus_tag="U0342_003096"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_015084540.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424407.1"
                     /translation="MPDWDFNNPESMKAWDLASGSYAEQVSGEVRAVVGSDLRKGNIW
                     ENVELPRLKNNPNVTKITTIDPKTGLEKIIFERK"
     gene            392..625
                     /locus_tag="U0342_003097"
     CDS             392..625
                     /locus_tag="U0342_003097"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003732237.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424408.1"
                     /translation="MKITGNSSQVKFDLENGYVVKADGEMLVGGEFVVFKDSMKNWEP
                     PYENKKLSESEVQEIIQQVKQSTNENTVQISFE"
     gene            713..>798
                     /locus_tag="U0342_003098"
     CDS             713..>798
                     /locus_tag="U0342_003098"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764899.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="dihydroorotate dehydrogenase (quinone)"
                     /protein_id="HEM2424409.1"
                     /translation="MDNFYKGFEGYPEIDFYTYINGEKTGIE"
BASE COUNT          324 a           83 c          166 g          225 t
ORIGIN      
        1 atttaaaact ttttagcaac agaaaggata ataaatttcg tacataaaaa caataaactt
       61 tccctcccaa gaaagccagt ggggctgata tagctaaaag taaaggtggc gttactttag
      121 aatcaacaat aggaaataaa aatattgaaa tgccagactg ggattttaat aatcctgagt
      181 caatgaaagc atgggatttg gcttctggtt cttatgcaga acaagtttct ggtgaagttc
      241 gtgcagtagt tggttcggat ttgagaaaag gaaatatttg ggaaaatgtt gagttaccta
      301 gattaaaaaa taatcctaac gtaacgaaaa taacaacgat tgatcctaaa acaggacttg
      361 aaaaaataat ttttgaaagg aagtaagtga aatgaaaatt acaggtaata gttcacaggt
      421 gaaatttgat ttagagaatg gatatgtagt gaaagcagat ggagaaatgt tagttggagg
      481 tgaatttgtt gtatttaaag attctatgaa gaattgggaa cctccatatg aaaataaaaa
      541 gctttctgaa tctgaagtgc aagaaattat tcaacaggta aaacagagca caaatgaaaa
      601 tacagtacaa atttcatttg aataaaagaa atccgagaag tagagtagtt gtttaatcct
      661 aaatgttaac aggtggacat tgggaataat aaggaatggc ggaagataaa atatggataa
      721 tttttataaa ggtttcgaag gatatccaga aattgacttt tatacttata taaatggtga
      781 aaaaacaggt atagaaat
//
LOCUS       DASEAA010000360          789 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.363, whole genome shotgun sequence.
ACCESSION   DASEAA010000360 DASEAA010000000
VERSION     DASEAA010000360.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 789)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.363"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..544
                     /locus_tag="U0342_003099"
     CDS             <1..544
                     /locus_tag="U0342_003099"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465076.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bifunctional folylpolyglutamate
                     synthase/dihydrofolate synthase"
                     /protein_id="HEM2424410.1"
                     /translation="NLSIGLLGLHQLNNAAVAIKVLQYLNTFSTFEIGLAAIKKGLEK
                     AFWPGRMEKIISNPFIMLDGAHNPEGIKTFAHSIQKYSGPKKIIVSILADKNYQEMLG
                     MLKSIPNTEIILTTFDYPRAMMAEEVIQIGKNEGISLNPDWQQVLGNLYETETNTKIF
                     ITGSLYFISEVRKYLLASKR"
BASE COUNT          285 a          110 c          147 g          247 t
ORIGIN      
        1 caatctttcc attgggctgc ttggtcttca tcaattgaat aatgcggcgg tagctattaa
       61 agtattacag tacttaaata cattttctac ctttgaaatt ggtttggcgg caattaaaaa
      121 aggcttggaa aaagcatttt ggccaggaag aatggagaaa atcatttcaa atccatttat
      181 tatgctggat ggagcgcata atccagaagg tattaaaaca ttcgctcatt ccatccaaaa
      241 gtattctggg cctaagaaaa taatcgtgag tatattagct gataaaaact atcaagaaat
      301 gttaggaatg ttaaagtcca ttcccaatac agaaataata ctaactactt ttgattatcc
      361 tagagctatg atggcggaag aagtaataca aataggaaaa aatgaaggta tttctttgaa
      421 cccagattgg cagcaagtat taggtaatct ttacgaaacg gagactaata cgaaaatctt
      481 tattacagga tcgctttatt tcatttcaga agtgcggaaa tatttgttgg cctcaaaacg
      541 ttaatctttt gaataaatcg agtatactgt gagaaataaa aaagaacaaa tagctaaaaa
      601 aggattttca gaagataaaa tatataaaaa cacctgtttt ccactaatga aaataggtgt
      661 ttttgttatg caatagaagg tggaaaagtg attttagcta tgtgcaaaaa gatttcgtct
      721 ctgctattct gtttttaaca actaggaggt gacagatgat ttacttttta ttagctattt
      781 atagtgcag
//
LOCUS       DASEAA010000361          772 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.364, whole genome shotgun sequence.
ACCESSION   DASEAA010000361 DASEAA010000000
VERSION     DASEAA010000361.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.364"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>772
                     /locus_tag="U0342_003100"
     CDS             <1..>772
                     /locus_tag="U0342_003100"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466373.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="AraC family ligand binding domain-containing
                     protein"
                     /protein_id="HEM2424411.1"
                     /translation="LNDYFFKNKDIYISKHNRFADYPYHTHQFLELNYMYSGSSEQVI
                     EGNKETLHEGELLLLDSGCHHSIKATGEKDILINILFRDQQISLEWLTSIKKKNSLLF
                     DFLLHSSVSEQSLKKYIIFQSAQIPHIQQILNQIITEYFLEEEFSSRIITLYLPILFT
                     ELVRKCDTYLADDLTNSQSSTTSTMLEVIKLIESNYRTITLTSAADTLGYNKNYLSNF
                     IKKNTNFTFTELVNKQKMLAANLLIETTSTPIELIIEKV"
BASE COUNT          290 a          159 c           98 g          225 t
ORIGIN      
        1 attaaatgat tatttcttca aaaacaaaga catttatata agcaaacaca accgatttgc
       61 ggactatcct tatcatacac accaatttct tgagctaaat tacatgtatt caggaagctc
      121 cgaacaagtc attgaaggaa ataaagaaac tttgcatgaa ggagaacttt tacttttaga
      181 cagtggctgc catcattcca tcaaagcaac aggcgaaaaa gacattctca tcaacatcct
      241 tttccgtgac caacaaatca gcctagaatg gctaacgagt ataaagaaaa aaaacagcct
      301 tctattcgac tttcttcttc attccagcgt aagcgagcaa tctttaaaga aatatattat
      361 ttttcaaagt gcgcaaattc cgcatatcca acaaatttta aaccaaatta tcacagaata
      421 ttttttagaa gaagaatttt catcaagaat tatcactctt tatttgccaa ttctgttcac
      481 tgaactggta cgtaaatgtg atacatattt agctgatgat cttaccaact cacaatcaag
      541 caccacttcc accatgctcg aagttattaa gcttatagaa tccaactatc ggacaatcac
      601 attaacaagt gccgcggata cattaggtta caataaaaat tacctcagta actttattaa
      661 aaaaaatacc aatttcactt ttaccgaact agtcaataaa caaaaaatgc tcgcagcaaa
      721 tcttttaatc gaaaccactt ccactccaat tgagttgatt attgaaaaag tt
//
LOCUS       DASEAA010000362          772 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.365, whole genome shotgun sequence.
ACCESSION   DASEAA010000362 DASEAA010000000
VERSION     DASEAA010000362.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 772)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.365"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(15..>772)
                     /gene="virB"
                     /locus_tag="U0342_003101"
     CDS             complement(15..>772)
                     /gene="virB"
                     /locus_tag="U0342_003101"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465272.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ABC transporter ATP-binding protein VirB"
                     /protein_id="HEM2424412.1"
                     /translation="LKAHKVRKVYGSKGNLFSALGSISLEIQKGSFVGIMGPSGAGKS
                     TLLNVLSSIDKPTSGEIEIGGKQISTMNGKELAVFRRDQLGFIFQDYNLLDTMTVKDN
                     IVLPLALARIKQAEIDQRFEIIARQFGIFELRNKYPTEISGGQKQRTAVCRAMITEPT
                     LIFADEPTGALDSKAATNLLEGLSQAKDVRDSTIMMVTHDAFAASYCERIMFIKDGEI
                     FTEIYRGTSSRKQFFQKVLDVLALLGGGENDVI"
BASE COUNT          235 a          175 c          123 g          239 t
ORIGIN      
        1 tggtcagcgc gactttaaat aacatcgttt tcgccacctc caagaagcgc caaaacatct
       61 aataccttct ggaagaattg ttttctagaa cttgtccctc ggtagatttc agtgaaaatt
      121 tcgccatctt taataaacat aattctttcg cagtaactgg ctgcaaaagc atcgtgcgtc
      181 accatcataa tagtggaatc acgcacatct tttgcttgag aaagtccttc taataaattg
      241 gtcgctgctt tggaatcaag cgcaccagtg ggttcatccg caaaaatcag cgttggttct
      301 gtaatcattg ctcgacaaac cgctgttcgc tgcttttgtc caccagatat ttcggttggg
      361 tacttgttcc ttaactcaaa aatcccaaat tgacgagcaa taatttcaaa ccgctgatca
      421 atttccgctt gtttaatacg agcaagagcc agcggtagaa caatattatc cttcacagtc
      481 atcgtatcta ataaattata gtcttgaaat ataaaaccaa gctgatctct tctaaaaaca
      541 gctaattctt ttccgttcat agtagaaatt tgctttccac caatctcaat ttctccagag
      601 gttggtttat ctatagaaga caatacattt aataaagtag atttaccagc accagaggga
      661 cccataatgc ctacaaagga acctttttgt atctctaaac taatacttcc aagcgcagaa
      721 aacaaatttc cttttgaacc gtatactttt ctaactttat gcgcctttag ca
//
LOCUS       DASEAA010000363          768 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.366, whole genome shotgun sequence.
ACCESSION   DASEAA010000363 DASEAA010000000
VERSION     DASEAA010000363.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 768)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.366"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..157)
                     /locus_tag="U0342_003102"
     CDS             complement(<1..157)
                     /locus_tag="U0342_003102"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731505.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424413.1"
                     /translation="MKNFVYVVANVSDGNSLIDFFVKTKSNYITEINYREGYIILSNE
                     CWYFQVMN"
BASE COUNT          230 a          159 c          111 g          268 t
ORIGIN      
        1 cattcataac ttgaaaatac caacactcat ttgataaaat aatgtaacct tcacgataat
       61 ttatttcggt aatgtaatta ctttttgttt ttacaaagaa gtcgattaag ctgttaccat
      121 cactcacatt tgcaacaaca tacacaaaat ttttcatgcg ttctctcctt ttctacataa
      181 aaaaacctcc atatcagaac gtatctgccc tgggggtatg gaggtattga cgttcaaagc
      241 actcggcaag gatttgcacc ttgcatgaac taagtaattt ttgctatagg tttcttaagc
      301 taaggcttac gctccttagc catattagtt cttacctcca atgcgtctac ctgttccgcc
      361 acgagtgttg gatatgatgc gtctcatatc agaccaacga taagatacaa tgcctctttc
      421 tgggcaaact atatattttt aaattgcgat tgatttatga ttaaagcata atgccttgcc
      481 aaaaatattt acctgtagcc acgatgatac atatcgtttt ccgtccatgc tatatttagt
      541 catttcatgt ttcataatta ccagctccta tttcttattt tcttgacaat aacatcttac
      601 cacggaattc cttgtttttt gtccggtaaa aagccggtaa aaagtcagca aaaagtttaa
      661 ttttatccgg taaaaagccg gttttttaaa tatccttgtc gataacagcc tgaattccga
      721 cattttcaag aatttcatgt ataaataatc tccctttttg agtccact
//
LOCUS       DASEAA010000364          767 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.367, whole genome shotgun sequence.
ACCESSION   DASEAA010000364 DASEAA010000000
VERSION     DASEAA010000364.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 767)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.367"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..767)
                     /locus_tag="U0342_003103"
     CDS             complement(<1..767)
                     /locus_tag="U0342_003103"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463583.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATPase"
                     /protein_id="HEM2424414.1"
                     /translation="MFSILMAIIQITGIFIAIQILTNKVFSIKEGLVTIAIAMLAFPL
                     FTLVQYWSMIFVLIVFVSALYWKNKNVVVSASITLVVIILLTISDSIVGFILVPGLNF
                     KYDEIFNELLPTLIYCAGMLANLLVFSFLLRKLIEKVNISRFVEHRKYAYIIFSIVAL
                     TVLAFYMNIYAGSIAGFDGSVLKINTLIFTGYTILLIVIVTVVINTATNELKVQNQKE
                     QLEQLQDYVTTLESLHREMRVFRHDYVNILSTLVGYI"
BASE COUNT          300 a          141 c           97 g          229 t
ORIGIN      
        1 tcaatatatc caacaagtgt tgacaggata ttcacataat catgacgaaa aacgcgcatt
       61 tctctatgca gggactctaa tgtagtaaca taatcctgta actgttctag ctgctccttc
      121 tgattctgta ctttaagttc gttggttgct gtattaataa caaccgtcac tataactatt
      181 aacaaaatgg tgtaccctgt aaaaataagg gtattaatct tcaaaactga tccatcgaat
      241 cccgctattg atcccgcata aatgttcata tagaatgcta agacagtaag agcaacgata
      301 gaaaaaataa tatatgcata ttttctatgt tctacaaatc tagaaatatt aactttttca
      361 atcaattttc taagaagaaa cgaaaatacc aacaaattcg ccaacattcc cgcacaataa
      421 attaacgttg gtaacagttc attaaatatc tcatcatatt taaagttcaa gcccggtact
      481 aaaataaaac ctactataga atcactaata gtaagtaaaa taataaccac aagcgtaata
      541 gaagctgaaa ctactacatt tttatttttc caatataagg cacttacaaa aacaatcaat
      601 acaaaaatca tcgaccagta ttgaactaat gtaaataaag ggaaggctag catagcaatt
      661 gctatagtaa ccaatccctc tttaattgaa aaaactttgt ttgttaaaat ctggattgca
      721 ataaaaatac ccgttatctg tataattgcc atcaaaatac taaacat
//
LOCUS       DASEAA010000365          765 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.368, whole genome shotgun sequence.
ACCESSION   DASEAA010000365 DASEAA010000000
VERSION     DASEAA010000365.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 765)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.368"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            95..760
                     /locus_tag="U0342_003104"
     CDS             95..760
                     /locus_tag="U0342_003104"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464790.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424415.1"
                     /translation="MKKRITMILGLVCLSTLTACSNSENVKEKTSEEPATAQNGAETI
                     KAHNGVVSYHGKYLKLAENMDTLEKDAPIIIKATKKSEKTTVTKETKENVFPTDFYTM
                     SDVQINSIEKDTTGKLSESMTIKVLEYSVENVLVEGKEYDLTIDGYKNMEKGEEYTLF
                     LEKNPDGENYILSNAVISKFPVEELPEEELFLDGGQTTEETDSIEEIYQEVYQEVLEE
                     FGE"
BASE COUNT          334 a           95 c          150 g          186 t
ORIGIN      
        1 tatgttagac aaaggattta taaataaaac aaaacctcaa acagacgatt ttaatggcat
       61 caaagcttta tataagtaaa aaggaggaat gacaatgaag aaaagaataa caatgattct
      121 aggtttagta tgtcttagta cattaactgc ttgttctaat agtgaaaatg tgaaagaaaa
      181 aacatcagaa gaaccagcaa cagctcaaaa cggagcagaa acaataaagg cgcacaatgg
      241 ggtggtctct tatcacggaa aatacctcaa acttgctgaa aatatggata cccttgaaaa
      301 agatgcccca attatcatta aagcaaccaa aaaatctgaa aaaacaactg taacaaaaga
      361 aacaaaagaa aatgtatttc caaccgattt ttatacgatg agcgatgtgc aaataaattc
      421 tatcgagaaa gatacaacag gaaaattgag cgagagtatg actattaaag tgttggagta
      481 tagcgtagaa aatgttttgg tagaagggaa agaatatgat ttaactattg atggttataa
      541 aaatatggaa aagggagaag aatatacact tttcttagaa aaaaatccag atggtgaaaa
      601 ttatatacta tcaaatgcag ttataagtaa attcccagtg gaagaattac ctgaagaaga
      661 attgttctta gatggagggc aaacaacgga agaaacagat agcattgaag aaatttatca
      721 ggaggtctat caagaagttt tggaagaatt cggtgaataa aaaag
//
LOCUS       DASEAA010000366          748 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.369, whole genome shotgun sequence.
ACCESSION   DASEAA010000366 DASEAA010000000
VERSION     DASEAA010000366.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 748)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.369"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..402)
                     /locus_tag="U0342_003105"
     CDS             complement(<1..402)
                     /locus_tag="U0342_003105"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424416.1"
                     /translation="MKYEAVFINRFKSLIEEFQLNYKVISEEELALFGSNFALVFLIH
                     FDEVSLNYVCRDKDNSLVSYDVWSYFLHVFDDKDRNNLPKYNSVQERVDISFLILARG
                     LPRHWSSVLNGDDKWLEDYERYELASVPREVI"
     gene            complement(392..748)
                     /locus_tag="U0342_003106"
                     /pseudo
     CDS             complement(392..748)
                     /locus_tag="U0342_003106"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464648.1"
                     /note="frameshifted; incomplete; missing N-terminus;
                     Derived by automated computational analysis using gene
                     prediction method: Protein Homology."
                     /pseudo
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
BASE COUNT          258 a          142 c           88 g          260 t
ORIGIN      
        1 gattacttct ctaggaacac tggctaattc atatcgctca taatcttcca accacttgtc
       61 atctccatta agcacactac tccaatgacg cggaagacct cttgcaagta ttaaaaacga
      121 aatatcaacc cgttcctgca ctgaattata ttttggcaaa ttattcctat ctttatcatc
      181 aaagacatgc aaaaaataag accatacatc ataactgaca agcgaattat ctttatcacg
      241 gcatacataa ttcaaagaaa cttcatcaaa atgaatcaaa aaaacaagcg caaaatttga
      301 accaaaaagt gctagctcct cttcagatat aactttataa tttaactgga attcttctat
      361 taatgatttg aatctattta taaaaacagc ttcatatttc attttgaaat ccttcaattt
      421 ttttgccatt gatatttttt ataatagttt ggtaggctga atactcgtct ttgttaatag
      481 ctctcggctc attataaaac ttattctctt taaactcctt tacccagtct tttgaccaga
      541 taacaattca tggaaatatt tacttaaacc tctcgcatga ataagtaagc tgttagaaat
      601 ttggtcggtc aaattctttg caggagttat attggctaac aaatcttttt cataatttga
      661 aaataagaaa ttggttattt tcactttttc taagctatga agaaacaggt aataaatatc
      721 aataccttct ctacttttcc aaatagtt
//
LOCUS       DASEAA010000367          724 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.370, whole genome shotgun sequence.
ACCESSION   DASEAA010000367 DASEAA010000000
VERSION     DASEAA010000367.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 724)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.370"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            391..>724
                     /locus_tag="U0342_003107"
     CDS             391..>724
                     /locus_tag="U0342_003107"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465179.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="cell surface protein"
                     /protein_id="HEM2424417.1"
                     /translation="MKKIISLLVAFVCLWSILLPGHEADAAAKINSWDLVDSSKHLDY
                     SGNSKYMSFIRSGANTWNAYKKGVIRPASGANKSDVYCSDISANNNINATTYSNGKIT
                     FNKKNMDKK"
BASE COUNT          272 a           84 c          141 g          227 t
ORIGIN      
        1 taggtgaaca tttagtgaag tatatgtcat aaaatgaata aaaaactaat aatcgctcta
       61 aaacgagtgg aaataggcct ttttaggcaa agttatttca gaaagagtaa gaataattct
      121 aaataagaat gctttttagt cattcacgac ataaaacaga catttcatta catttttggt
      181 tatacactct gttttcgtgt tacaattttt ttgttcgatg aaaggtaata aaaagcacag
      241 tctactacgg gaaaatgatg ggtgattgta tgttttaaag tgaggtgaat acaaaaaggg
      301 agtgagtttg taagataata gtttgtttta tgacaatatg tttgaggcta cactttatta
      361 attattacat acaaagaggg agagcggaga atgaaaaaaa ttatatcatt attagtagca
      421 tttgtatgtt tgtggagtat tttacttcca ggacatgaag cagatgcagc ggcaaaaatc
      481 aatagctggg acttagtaga ttctagtaaa cacctagatt actcggggaa ttcaaagtat
      541 atgtcattta ttcgatctgg cgctaatact tggaatgctt ataaaaaagg agttattaga
      601 ccagcttcag gagcgaataa atcagacgta tattgtagtg atatttcagc caataataat
      661 atcaatgcaa cgacttatag taacgggaaa attactttta acaagaaaaa tatggataaa
      721 aaaa
//
LOCUS       DASEAA010000368          721 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.371, whole genome shotgun sequence.
ACCESSION   DASEAA010000368 DASEAA010000000
VERSION     DASEAA010000368.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 721)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.371"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..366
                     /locus_tag="U0342_003108"
     CDS             <1..366
                     /locus_tag="U0342_003108"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726037.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424418.1"
                     /translation="TCSKDSAIGISKKAIDILLIINENTFPEWPNVDRWLSILPKYFT
                     DSFSKSKILHSEDWLFEEWLYWFEPENRFWFLGELDPVDNEHLKISIVVQEHPFPVES
                     LEVLLMKLGTSELHEIGME"
     gene            472..>721
                     /locus_tag="U0342_003109"
     CDS             472..>721
                     /locus_tag="U0342_003109"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012581428.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424419.1"
                     /translation="MENYVSIVKIENNLSVCFYNSSEKVVAIAKKMNEINEEAYMHGY
                     NWEAFFNYYLPKYAPDVLEGMGSDPEAGMYVAYYTLSPE"
BASE COUNT          258 a           94 c          143 g          226 t
ORIGIN      
        1 acttgcagta aggattctgc tattggcatt agtaaaaagg caattgatat attattgata
       61 atcaatgaaa atacatttcc tgaatggcca aatgtagata gatggctttc tattttgcca
      121 aaatatttta cggattcttt ttcaaaatca aaaatattgc atagtgaaga ttggctattt
      181 gaagagtggt tatactggtt tgaacctgaa aatagatttt ggtttttagg agaattagat
      241 cctgttgata atgagcattt gaaaataagc atagttgtac aagaacaccc ttttccagta
      301 gaatcattag aagttctact tatgaagcta ggaacaagcg aattacatga aattggtatg
      361 gaatgaggtt aaatgtactt ttaacggata tatcttttac aatagagctg aattttgtta
      421 gagtttaaaa tgaaaaaaca actaagttat aacgaaagga gctaacactt gatggaaaat
      481 tacgtgtcaa tagtaaaaat cgaaaacaat ctttccgtgt gcttttacaa cagctcggag
      541 aaagtagtag caattgctaa gaaaatgaat gagattaacg aagaagctta tatgcatggt
      601 tacaattggg aagcattttt caactactat ttacctaaat atgctccaga tgtcttagaa
      661 ggaatgggct ctgatccgga agcgggaatg tatgtggcgt attacacgct atcacctgaa
      721 a
//
LOCUS       DASEAA010000369          714 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.372, whole genome shotgun sequence.
ACCESSION   DASEAA010000369 DASEAA010000000
VERSION     DASEAA010000369.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 714)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.372"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..650)
                     /locus_tag="U0342_003110"
     CDS             complement(<1..650)
                     /locus_tag="U0342_003110"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463843.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TatD family hydrolase"
                     /protein_id="HEM2424420.1"
                     /translation="MRNMGYIDLHVHIDFYSEPIKIAREYERLKIYVIFVTYLPEIFL
                     KTRYEYDNYKYVRLGVGFHPDMVGEYDFDKNAFERGLQYTRYIGEVGLDFSKSNQQFK
                     EQQIEIFQQITSPKYNKGNVYSIHSRKAEVEVLQILKSNNVKSAIFHWYTGGKHMLKD
                     ISDSGYFFSVNHKMLTSKNGIDIIKSIPKSQLLFETDGPFARKEKSIVYPSNFKQI"
BASE COUNT          228 a          128 c           83 g          275 t
ORIGIN      
        1 taaatctgtt taaaattgct tggataaaca atacttttct cttttctcgc aaaaggacca
       61 tccgtttcaa ataataattg ggacttagga atgcttttaa taatatcaat accatttttc
      121 gaagtaagca ttttatgatt tacagaaaaa aaatatcctg aatctgaaat atcttttagc
      181 atgtgttttc ccccagtata ccaatgaaag attgcacttt taacattgtt gcttttaaga
      241 atttgcagta cttctacctc agcttttctg gagtggatcg aatacacatt tcctttgtta
      301 tattttgggc tagttatttg ttgaaatatt tctatttgtt gttctttaaa ttgttgattc
      361 gatttagaaa aatccagccc tacttctcca atatatctag tgtactgtag ccctctttca
      421 aacgcattct tatcaaaatc atattcccct accatatctg gatgaaatcc tactcctaat
      481 cttacatatt tataattatc atattcatat cgagttttca aaaatatttc tggcaaataa
      541 gtaacaaaaa taacatatat cttcaaccgt tcgtattctc ttgcaatctt tattggctct
      601 gaataaaaat ctatatgcac atgaagatca atgtatccca tatttcgcaa taaacctttc
      661 gtattcagat gcaaatttat caaacattac tttttgatat ctcaagtaat tatt
//
LOCUS       DASEAA010000370          713 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.373, whole genome shotgun sequence.
ACCESSION   DASEAA010000370 DASEAA010000000
VERSION     DASEAA010000370.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 713)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.373"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            73..450
                     /locus_tag="U0342_003111"
     CDS             73..450
                     /locus_tag="U0342_003111"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726068.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424421.1"
                     /translation="MARLPNQYLFVKTVVDAERLFDEKTKSYVVVELRDAYEYADGKI
                     TDNVIGKNVTLMCTRDEEDYGVTKAGKKIPNLKFKQFDIKILNGAFEVPKGTRVKMDL
                     GKLEKAVGYKTTLVNKYRLYLKI"
BASE COUNT          263 a           89 c          156 g          205 t
ORIGIN      
        1 acttcatatt ataataaaat tacgcgtaac aataacgata atctgcgcag gttagaaagg
       61 gttgatgtaa agatggctag attgccaaat cagtatttat ttgtgaaaac agtggtggat
      121 gccgaaagat tgttcgacga gaaaacaaaa agttatgttg tggttgaact aagggatgcg
      181 tacgaatacg ctgacggcaa gataactgac aatgtgatcg gaaagaatgt aacacttatg
      241 tgtaccagag acgaagagga ttatggagta acaaaagctg gcaaaaaaat acccaatctc
      301 aaattcaagc aattcgatat taaaattttg aatggggctt ttgaagtacc aaaaggcaca
      361 agagtcaaaa tggatttagg gaaactagaa aaggctgttg gttacaaaac gactttggtg
      421 aacaagtatc gattgtattt aaagatttag atgttattaa gtagagattt aggcaacgtc
      481 aaagaaattg acgttgtcct tctcctaaaa aggagctatg tgaattgaga gtcacacaaa
      541 gtaaattaaa tgggttctac gtttttggtt ctacattgat gttaatagtt atctggatat
      601 tgcttgcata tcaaaacgag tcaatgaacc aagtgtttaa ggctgtgggc ataaatttta
      661 gaatagaact tcaaaaagta aataatatat tttttgttgc tgtgacaatg ata
//
LOCUS       DASEAA010000371          708 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.374, whole genome shotgun sequence.
ACCESSION   DASEAA010000371 DASEAA010000000
VERSION     DASEAA010000371.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 708)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.374"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..151)
                     /locus_tag="U0342_003112"
     CDS             complement(<1..151)
                     /locus_tag="U0342_003112"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2424422.1"
                     /translation="MIELVNVSKKIQDKLILEKVSLSIGAGEFIAVVGESGSGKTTLL
                     NVIGHL"
     gene            complement(144..>708)
                     /locus_tag="U0342_003113"
     CDS             complement(144..>708)
                     /locus_tag="U0342_003113"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1430 domain-containing protein"
                     /protein_id="HEM2424423.1"
                     /translation="TGNITDPIAIVYTGNIDSSSIGAHVTSSVYFIDKSNGDAFNAIL
                     PLISNSNAREITHVRSVYQEVSSEITTLKWQIYQQLIGTIILALCLCSFMVLLVLSYY
                     GENLYKQLIYHVFGYSFWKSSKWFSISNLFVSVFSGILIFILSKEPVALYFSVVILII
                     ELCAIYFIKEKAIYKDFKAILKGEKYD"
BASE COUNT          248 a          137 c          101 g          222 t
ORIGIN      
        1 ctaggtgtcc gataacattc agcagcgtgg tcttcccact accactctcg ccgacgactg
       61 caataaattc accagctcca atagaaagag agactttttc caaaatcaat ttatcttgta
      121 tctttttact gacattaact aattcaatca tatttttcac cttttagtat ggctttaaaa
      181 tctttataaa tcgctttttc ctttatgaaa taaatggcac atagttctat tatgagaata
      241 acaacgctaa aatatagggc aaccggttct ttgctaagaa taaaaatgag gattccagaa
      301 aaaacactca caaacaaatt gcttatacta aaccatttac tacttttcca aaacgaatag
      361 ccaaatacat gataaattag ttgcttatat aagttctccc cgtaatagga cagtacaaga
      421 agtaccataa aagagcataa gcatagggct aagataatcg tacctatcaa ttgctgatat
      481 atttgccatt tcaaagtagt tatttcgctt gaaacttctt gataaacact ccttacatgg
      541 gtaatttctc ttgcatttga attactaata agtggtaaga tagcgttaaa agcgtcacca
      601 ttcgatttat caataaaata tacagaagaa gttacatgag cgccaatact agatgagtca
      661 atatttcccg tatatacaat cgcaattgga tccgtgatat ttccagtc
//
LOCUS       DASEAA010000372          699 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.375, whole genome shotgun sequence.
ACCESSION   DASEAA010000372 DASEAA010000000
VERSION     DASEAA010000372.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 699)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.375"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>699
                     /locus_tag="U0342_003114"
     CDS             <1..>699
                     /locus_tag="U0342_003114"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424424.1"
                     /translation="LFYYLYTKSSKWWYFIIIGLLFAVGYQIKPNIIILLPAMLIHLC
                     FIRNWRKILLNTVIVAICFFGLSTVFTPIAESYDFKKDPTIEFPQTHWIMMGLGDPAG
                     RYNSNDVAYTSQFKTKEEKEEANIEKIKERIEEHGPLGLIKLFDNKVLNTWTDGTRAY
                     TWYVNAALDYPAPYDYFFGDKRVVTELPAQLFHIINLFLICLGALRFYKKREFDMSFF
                     VNISLVGVWLFHLF"
BASE COUNT          212 a          110 c          130 g          247 t
ORIGIN      
        1 cttattttat tatctataca cgaaaagtag taaatggtgg tatttcatca ttattgggct
       61 gctgtttgca gtaggttatc aaattaagcc gaatatcatc attttacttc cagcaatgct
      121 tattcattta tgttttataa gaaattggcg taaaattcta ttgaacacgg tcatcgtagc
      181 aatttgcttt ttcggtttaa gcactgtttt tacaccaatc gcagagagtt atgactttaa
      241 gaaagaccca accattgaat ttcctcaaac acattggatt atgatggggc ttggcgatcc
      301 agccggtcgt tataacagca atgatgttgc ttatacttca caatttaaaa caaaagaaga
      361 aaaagaagaa gccaatattg aaaaaattaa agaacgtatt gaagaacatg gaccgcttgg
      421 cttaataaag ctttttgata ataaggtgtt aaatacttgg acagacggaa cgcgagcata
      481 tacgtggtat gttaatgctg cacttgatta tccagctcct tatgattact tctttggaga
      541 taaacgggtt gtcactgaat tacctgctca gctgttccat attattaatt tgtttttaat
      601 ttgtctaggt gctttacgtt tttataagaa aagggaattt gatatgtcct ttttcgttaa
      661 tatttcgcta gtaggtgttt ggctattcca cttattctg
//
LOCUS       DASEAA010000373          698 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.376, whole genome shotgun sequence.
ACCESSION   DASEAA010000373 DASEAA010000000
VERSION     DASEAA010000373.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 698)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.376"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            14..>698
                     /locus_tag="U0342_003115"
     CDS             14..>698
                     /locus_tag="U0342_003115"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743964.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage tail protein"
                     /protein_id="HEM2424425.1"
                     /translation="MIPILYESKNTDFENNGLGLLKDIITATVDETLNGPCELTIEYP
                     VTARLFDKISDESIFKVKSNEVQNFQLFRAYNIVRDEFTSSIIVKAKHITNDATSNFV
                     EDFTVENITPGAALNKLFSSTAYPSKFSGTSDIATLSSTSIQRKNPLEIIAGVEGSLL
                     DTWGGELVRDNFSIKLLKRRGRDKVASIRYRKNLTGLETDVDTENVITRIYPFANKQD
                     SNGNEQTIVL"
BASE COUNT          248 a          107 c          136 g          207 t
ORIGIN      
        1 ggaggtatgt gtaatgatac caattttata tgagtcaaaa aatacagatt ttgaaaataa
       61 tggattaggt ctactaaaag acattatcac tgcaacagtt gacgaaacat tgaatggacc
      121 gtgtgagttg acaattgaat atcctgtaac agcaaggcta ttcgataaaa taagtgacga
      181 gtctattttc aaagtaaagt caaatgaagt gcaaaatttt cagcttttcc gagcatacaa
      241 tatagtgcgt gacgaattta ccagctccat tatagtgaag gctaaacata ttacaaatga
      301 tgctacttca aattttgtag aagatttcac ggtcgaaaat attacaccag gtgccgcatt
      361 aaataaattg ttttcttcta ctgcttatcc ttctaaattt tctggaacgt cagacatcgc
      421 tacgttatca agtactagta tacaacgaaa aaatcccctt gaaattattg cgggagtcga
      481 aggctctctc ttggatacat ggggagggga gttagttcgt gataacttta gtataaaact
      541 attaaaacga cgtgggagag ataaagttgc atctattaga taccggaaaa atttaactgg
      601 attagaaact gatgtagata cggaaaatgt aattactcga atttatccat tcgcgaataa
      661 gcaagattca aatggtaatg agcaaacgat tgtattgc
//
LOCUS       DASEAA010000374          691 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.377, whole genome shotgun sequence.
ACCESSION   DASEAA010000374 DASEAA010000000
VERSION     DASEAA010000374.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 691)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.377"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..387
                     /locus_tag="U0342_003116"
     CDS             <1..387
                     /locus_tag="U0342_003116"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_038330181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="terminase large subunit"
                     /protein_id="HEM2424426.1"
                     /translation="WFLEQAKEHRIINIATDSFRYKSLKEAFTSAGAPLIQVRSGPYS
                     HNRLSSMVDKLFASHKIIFGDDMLMRWYCNNVAIKFDARGEKTYIKIEPKTRKTDGFF
                     ALLHTLMLDEELPETREIKLYDVTTY"
     gene            401..>691
                     /locus_tag="U0342_003117"
     CDS             401..>691
                     /locus_tag="U0342_003117"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003743952.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="phage portal protein"
                     /protein_id="HEM2424427.1"
                     /translation="MGFKSWVSGFFNEEQRTLNLTDTVWCSIPSEKLKELSIKKWAID
                     SCANKIANTLSCAEVLTYEKGEEVRKKNWYMFNVEANQNQNATEFWKKAIYKL"
BASE COUNT          246 a          100 c          147 g          198 t
ORIGIN      
        1 tggtttttag aacaagcgaa ggaacaccgc ataataaata ttgcaacaga tagcttcaga
       61 tataaatcct tgaaagaagc atttacgagt gcgggtgcgc ctctgattca agtccgttct
      121 ggtccatatt cgcataacag attatcaagc atggtagata aactatttgc ctcgcataaa
      181 ataatttttg gcgatgatat gctgatgcgc tggtactgta acaatgtagc tattaagttt
      241 gatgcgcgtg gtgaaaaaac atatataaaa attgaaccga agacacgtaa aacggatggt
      301 ttttttgctt tgctgcatac actaatgctt gatgaagaat tgccagagac acgagaaata
      361 aaactgtatg atgtgactac gtactaggag gtgataaata ttgggattca aaagttgggt
      421 gagtggattt tttaatgaag aacaaagaac attgaattta acggacacgg tatggtgttc
      481 tattccttct gagaaactaa aagaattgtc tataaagaaa tgggcaattg attcttgtgc
      541 taataaaatt gccaacactc tatcttgtgc agaggtactc acctatgaaa aaggtgaaga
      601 agtccgtaaa aaaaattggt atatgtttaa tgttgaagca aatcaaaatc agaatgcaac
      661 tgagttttgg aagaaagcaa tatacaaact t
//
LOCUS       DASEAA010000375          690 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.378, whole genome shotgun sequence.
ACCESSION   DASEAA010000375 DASEAA010000000
VERSION     DASEAA010000375.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 690)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.378"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            323..607
                     /locus_tag="U0342_003118"
     CDS             323..607
                     /locus_tag="U0342_003118"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724764.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="transposase"
                     /protein_id="HEM2424428.1"
                     /translation="MPKKLYNEKFKKSLVYLYHHGTPKYTLCNDFGVSIASLTRWIKF
                     YNTENIDLNEATNILQMYELKKQKSVLEAEISALSEAITIFNMETSSVEN"
BASE COUNT          280 a           89 c          114 g          207 t
ORIGIN      
        1 ttggaaatat agagataaca tcaaggaaat cctatatatt agcatctata tttactaaaa
       61 tttaaaggga gggacaataa attgtaaaag aatttgctaa gcgattcaaa agaaaaatta
      121 ttatataaaa tgaaaaaaag aaagagttac taagttatat cggaatcacg ggatgtatta
      181 aaagtaatct gcaccttgaa aatggcggaa tagtccattt gctggaaaat aaagccagca
      241 gtgaactttg aaatcaaaca gtatttaaca gttatctgag acattactaa actctgaaaa
      301 acgcacagga aaggaactgt tcatgcctaa aaaattatat aatgaaaaat tcaaaaaaag
      361 tctagtctat ttgtatcacc atggaacacc aaagtatacg ctatgtaatg attttggtgt
      421 ctcaatagca tctcttacaa gatggattaa attttataac acagaaaata tagatttaaa
      481 cgaagctacc aatattttac aaatgtatga attaaaaaaa caaaaatcgg tactagaggc
      541 agaaatttct gctttatcag aagctatcac gatttttaac atggagacga gtagtgtcga
      601 aaattaagtg aaatccactc atatattact atgggtggat ttttttatgt ggtaataccc
      661 gtaagtgaca tttttgtaag tttcattttt
//
LOCUS       DASEAA010000376          686 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.379, whole genome shotgun sequence.
ACCESSION   DASEAA010000376 DASEAA010000000
VERSION     DASEAA010000376.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 686)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.379"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            77..>686
                     /locus_tag="U0342_003119"
     CDS             77..>686
                     /locus_tag="U0342_003119"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725049.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3037 domain-containing protein"
                     /protein_id="HEM2424429.1"
                     /translation="MENFKLNYAVLQYMPDPIRREAINVGVVFHCPSRNWSEFCPIKN
                     KSRLRSFDDEYDKEYIDMMFDSFDYEFNSHIIDEYPERFNRIENENFLKENIKFYVNE
                     FRFLPVESIHTNDSEFWNDIRDVERTFLYYDKPKSERISSRDVRELLRKNLANHNIKN
                     QIKNLDVRCEFGSKKVFDFMYEKNVFKAISFDKQKSGQLANEL"
BASE COUNT          259 a           78 c          125 g          224 t
ORIGIN      
        1 tatcaactag agaattatgc tggtatactt caacagttaa aagatgtatt ttatttatgg
       61 aaaggagcat gttgaaatgg aaaattttaa attaaattat gctgttcttc aatacatgcc
      121 tgatcctatc cgaagagagg ccattaatgt aggagtagtt tttcattgcc caagtagaaa
      181 ttggtcagaa ttttgtccta ttaaaaataa aagtaggcta aggtcatttg atgatgagta
      241 tgacaaagaa tatattgaca tgatgttcga ctcatttgac tatgagttta actcgcacat
      301 tatagatgag tacccagagc ggtttaatag aatagaaaat gaaaactttt taaaagaaaa
      361 cattaagttt tatgtcaatg agtttcgatt ccttccagtt gagtcaattc acacaaatga
      421 ttcagagttt tggaatgata tacgagatgt ggaaagaaca tttttgtact atgataaacc
      481 taaatcagaa agaatatctt ctagagatgt tagagagttg ttaaggaaaa atcttgcaaa
      541 tcataatatt aaaaatcaaa tcaaaaactt agatgtaaga tgtgaatttg gtagcaaaaa
      601 agtttttgat tttatgtatg aaaagaacgt ttttaaagct atttcttttg ataaacaaaa
      661 aagtgggcaa ttagctaatg agctca
//
LOCUS       DASEAA010000377          664 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.380, whole genome shotgun sequence.
ACCESSION   DASEAA010000377 DASEAA010000000
VERSION     DASEAA010000377.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.380"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            138..455
                     /locus_tag="U0342_003120"
     CDS             138..455
                     /locus_tag="U0342_003120"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465673.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="nucleoside triphosphate pyrophosphohydrolase
                     family protein"
                     /protein_id="HEM2424430.1"
                     /translation="MDFKEYQILANRTAATHEQALTNYGLGITGEAGEVADLIKKYAF
                     HGHDLDKESLTKELGDVLWYVSQIAKWADISMETVAELNIEKLKRRYPQGFSTERSKL
                     HID"
     gene            complement(505..>664)
                     /locus_tag="U0342_003121"
     CDS             complement(505..>664)
                     /locus_tag="U0342_003121"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465672.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DUF1361 domain-containing protein"
                     /protein_id="HEM2424431.1"
                     /translation="LHSIHLLTQPIDSLQIMFSVFHWPFWNFVFYFSIIQYVIYTLFS
                     RFSSSLKN"
BASE COUNT          269 a           84 c          132 g          179 t
ORIGIN      
        1 ctttaaagat aaaaaatttt taaagatgaa atgcattgat agagcatcag ttcgcataag
       61 ttggaaatag tcaagactgc aaaggaaaaa aattatctgt tatagtaaga aagtgagaga
      121 agcaaggagg aaaacatatg gattttaaag agtatcaaat tttagcgaat agaactgctg
      181 caacacacga acaggcacta acaaattacg gacttggtat tactggagag gccggtgaag
      241 ttgccgattt gattaagaaa tatgcttttc atggacatga tttagataag gaatctctaa
      301 caaaagagct aggggatgta ctttggtacg tatcacaaat tgctaaatgg gcagatataa
      361 gcatggaaac agtagcagaa ttaaatatcg agaaattaaa gcgtcgttat cctcaaggtt
      421 tttcaacaga gcgaagtaag ctacatatcg attaaaaaaa cgtttgtatt taagaaaatt
      481 aattttccta aaatacaaac gtttttagtt ttttagtgag ctagaaaacc tgctaaatag
      541 cgtataaatt acatattgaa taatcgaaaa gtaaaacaca aaattccaaa atggccagtg
      601 aaaaacacta aacataattt gcaatgagtc aattggctgc gtaagtaaat ggatggagtg
      661 taaa
//
LOCUS       DASEAA010000378          664 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.381, whole genome shotgun sequence.
ACCESSION   DASEAA010000378 DASEAA010000000
VERSION     DASEAA010000378.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 664)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.381"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..420
                     /locus_tag="U0342_003122"
     CDS             <1..420
                     /locus_tag="U0342_003122"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2424432.1"
                     /translation="ATTNLYEKFDRALIRRFDSVINFNRYEKEDLVEISEIILNSLLK
                     KFKDAGRDMKLFKKVIRNMDEIPNPGELKNLIRVSLAFSDPTNEFDYLRRLLRYVVEK
                     PGNIELKELQNMGFTVREIEILTGISKSQVSRELKGD"
     gene            425..>664
                     /locus_tag="U0342_003123"
     CDS             425..>664
                     /locus_tag="U0342_003123"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM2424433.1"
                     /translation="MNDILHLKGKFEQKERTNRPSGPKLPKNAIVSIKEVEELCDDLL
                     KMESFWSTQTIFSGGLVSVYYKKVAAKSNRISGFLS"
BASE COUNT          262 a           64 c          136 g          202 t
ORIGIN      
        1 gccactacta atttgtatga aaaatttgat agagccttaa taagaagatt tgattcagta
       61 attaatttta atagatatga aaaggaagat ttagtagaaa tttcagaaat catattgaat
      121 tcattattga aaaaatttaa agatgctgga cgagatatga agttatttaa aaaagtaatc
      181 agaaacatgg atgaaattcc gaatcctgga gaattaaaaa atttgattag ggtatcatta
      241 gcttttagtg atccaacaaa tgaatttgat tatctcagga gattgctgag gtatgtagtt
      301 gaaaaacctg gtaatataga attgaaagag ttacaaaaca tggggtttac tgttagagag
      361 atagagatat taactggtat atcaaaaagc caagtctcaa gagagttgaa gggagattga
      421 aaacatgaat gatattttac atttgaaagg taaattcgaa caaaaagaac gaacaaatag
      481 acctagtggt cctaaattac ctaaaaatgc aattgtttct attaaggaag tagaagaact
      541 ttgtgatgat ttgttgaaaa tggaaagttt ttggagtacg caaactattt ttagtggcgg
      601 gttggtcagc gtatattata aaaaggtagc agcaaagagt aacagaatta gcggttttct
      661 atct
//
LOCUS       DASEAA010000379          657 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.382, whole genome shotgun sequence.
ACCESSION   DASEAA010000379 DASEAA010000000
VERSION     DASEAA010000379.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 657)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.382"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>657
                     /locus_tag="U0342_003124"
     CDS             <1..>657
                     /locus_tag="U0342_003124"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014929206.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424434.1"
                     /translation="VTDISPIDQLPNLVSLSVKNNQISSLILNAQNQLPKLTTIDIEN
                     NPDLNTIDIQDQPQLVDVKTSGYTGLRKLTTVIAKNNPELVNLGQYTIRNVYFSQVAS
                     LTKVELVNLPKVRKVNLERNSINELKVTDLAIEDLPLGENELTDTVFDNIQNLPNLKT
                     LDLSKNQLEEVVLDKTDVENLPNLMTLNIQQNLAIKLINVQDQPQLVDVKTSDYKELS
                     A"
BASE COUNT          267 a          118 c           98 g          174 t
ORIGIN      
        1 gtaacagaca tttctccaat agatcaatta cctaatttag taagcctatc ggtaaaaaac
       61 aatcaaatta gcagtcttat cttaaatgcg caaaatcaac tcccgaaact aacaaccatt
      121 gatattgaaa ataatcctga tcttaatact atcgatatcc aagatcaacc ccaattggta
      181 gatgtaaaga catccggtta tacaggatta cgcaagttaa caacggtaat tgccaaaaac
      241 aatccagaat tagtcaattt aggccaatac actatccgaa atgtctactt tagccaagta
      301 gcaagtttaa cgaaagttga actagtcaat ctccctaagg taagaaaagt aaaccttgag
      361 aggaacagta ttaatgagct aaaagttact gatttggcca ttgaagatct gccattagga
      421 gaaaacgaat taacagatac agtatttgat aacatccaaa atctgcctaa tttaaaaacg
      481 ttagatctgt caaaaaacca actagaagaa gttgtattag acaaaacgga tgtagaaaat
      541 ctacccaatt tgatgacact aaatatacaa caaaatttgg ctataaaatt gataaatgtt
      601 caagaccaac cccaattggt agatgtaaaa acttctgatt ataaagaatt atctgcg
//
LOCUS       DASEAA010000380          653 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.383, whole genome shotgun sequence.
ACCESSION   DASEAA010000380 DASEAA010000000
VERSION     DASEAA010000380.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 653)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.383"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>653
                     /locus_tag="U0342_003125"
     CDS             <1..>653
                     /locus_tag="U0342_003125"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989452.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="leucine-rich repeat domain-containing protein"
                     /protein_id="HEM2424435.1"
                     /translation="LFMVLGIQGNNEVKAATLATPPAPINQIFPDADLAEGIRAVLQK
                     ASVTDVVTQEELESITKLVVAGEKVASIQGIEYLTNLEYLNLNGNQITDISPLSNLVK
                     LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLNLGANHNLSD
                     LSPLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYF"
BASE COUNT          239 a           96 c          118 g          200 t
ORIGIN      
        1 tttgttcatg gtattaggta ttcagggtaa taatgaggtt aaagcagcaa ctttagccac
       61 gccaccagct ccaattaatc aaattttccc agatgcagat ttagcagaag gaatacgagc
      121 agtgcttcaa aaagcaagtg tcacagatgt agtgacacaa gaagaattag aaagcattac
      181 gaaattagta gtagccgggg aaaaagtagc ctccattcaa gggatcgagt atttaactaa
      241 tttggagtac ttaaacctta atggaaacca aattactgat attagcccat taagtaattt
      301 agttaaatta acgaatctgt atattggaac taataaaatc actgatatta gtgccttgca
      361 aaacttaact aatttaaggg agctatatct taatgaagat aatattagcg atattagtcc
      421 attagcaaat ttaactaaaa tgtattcttt gaatttgggg gctaatcata acctcagtga
      481 tttaagtccg ttaagcaata tgacaggttt gaattatttg acagtcacgg agtctaaagt
      541 aaaagatgtg acaccaatag ccaatttaac cgacttatat agtttaagtt tgaattataa
      601 tcaaattgaa gatataagtc cgctagctag tttgacaagt ttacattatt tta
//
LOCUS       DASEAA010000381          649 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.384, whole genome shotgun sequence.
ACCESSION   DASEAA010000381 DASEAA010000000
VERSION     DASEAA010000381.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 649)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.384"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            396..>649
                     /locus_tag="U0342_003126"
     CDS             396..>649
                     /locus_tag="U0342_003126"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724906.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424436.1"
                     /translation="MEIVIQRAQNVLKLIDEEFPNQKLYNGIIRDIYVLTEKILKSAE
                     GNCLITEKIDLNSLGRQFVDNGGSYNSPVILEFEKLVNQL"
BASE COUNT          266 a           76 c          130 g          177 t
ORIGIN      
        1 cgaaaaaata tacctttaaa ttaacttaat gagtggctaa atatagaact aaaatagatg
       61 ataaagttat tgaaatggat agagaaattc tacctcaggg agtaatagat tccttcttag
      121 atggaaatta tcgtacagta aaaactactg aggaaataac ggtgtataga gagtatttgg
      181 tggaaatgca aagtctacag gaagttttgt gacttcagag aagacaataa gtcgaataga
      241 cgcaaaaata gatatggcat tattacctgg atggaagaat actcgcatgt acgaagcaga
      301 aataattatt cctaaaggcc agcaaattaa tattggggaa aattgcacct caagtaatcg
      361 agtcgacaga tacaatatta aaaggagggg tatagttgga gatagtaata caacgcgcac
      421 aaaatgtttt aaaattaatt gatgaagagt ttcctaacca aaaattatat aatgggataa
      481 taagagatat ttatgtatta acagaaaaga tacttaaatc tgctgaggga aactgcctaa
      541 tcacagaaaa aatagatttg aatagtctgg gcagacagtt tgtagataat ggtggttctt
      601 ataacagtcc agtaatatta gaatttgaga aacttgtaaa tcaactaaa
//
LOCUS       DASEAA010000382          648 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.385, whole genome shotgun sequence.
ACCESSION   DASEAA010000382 DASEAA010000000
VERSION     DASEAA010000382.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 648)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.385"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            281..427
                     /locus_tag="U0342_003127"
     CDS             281..427
                     /locus_tag="U0342_003127"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464376.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424437.1"
                     /translation="MDNNQKDLNQVIRQLKEKGIVVEKTKSRKDIWKAVSNKAMPNMT
                     LRLQ"
BASE COUNT          255 a           61 c          123 g          209 t
ORIGIN      
        1 cttgggattt tattttatac taaaaaggaa acacctttac atatttgccc tgaaatgatt
       61 ataaaagcat agctgaagta tagatttttg gtgtttttct ttatattaac tggaaaataa
      121 ctaaaaaaat tcgggtttca aacgctttct tgaaaaaaag agaagataat ggttagtttt
      181 ttaattaata gggtattctt agtaaagaga atatgttaaa gtaaggaaag agagaaaaaa
      241 taaaagaatg aaaacaaatt ttgaagatgg agtgatgagt ttggataata atcaaaaaga
      301 cttgaatcaa gtaattcgtc agctcaaaga aaaaggaata gtagttgaaa aaacaaaatc
      361 acgaaaagat atttggaaag cggttagtaa taaagcgatg ccgaatatga cacttcgatt
      421 gcagtaaatc gaaaagtgga gtttttatgt gatattttgt gaggctttga agtaaaatga
      481 ctcaaagcag catgatttac atataaaata acttcacttt ttttctttgt cataaattag
      541 tcattaagtt ttgatgtttc tgttatcctt tttacgcaaa aatgttgtat gatggaatgg
      601 aaggcttttg tcatagaaga aaatagaaat agagtgaggc atatacat
//
LOCUS       DASEAA010000383          647 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.386, whole genome shotgun sequence.
ACCESSION   DASEAA010000383 DASEAA010000000
VERSION     DASEAA010000383.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 647)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.386"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(288..569)
                     /locus_tag="U0342_003128"
     CDS             complement(288..569)
                     /locus_tag="U0342_003128"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464595.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YlaN family protein"
                     /protein_id="HEM2424438.1"
                     /translation="MANKKIDHREEAVELLKQDAKRILQLIKVQMDNLTLPQCPAYEE
                     VLDTQMYGLSREINFATRLGLIEPEEGKKLMSTLEKELSTLHELSMSKK"
BASE COUNT          203 a          133 c           92 g          219 t
ORIGIN      
        1 ctaaagacca gctggcacta tagatcataa taagcccaaa taaacatagc acgataaata
       61 ccgctataaa tgcataatca taagatttta aaattcgttt aaacatcggc atcgtccaat
      121 ccctgagaag ttactatccc atcttgtttt ctattcttcc tattataaag gaaaagacct
      181 ccaaatgaaa agaagaatcg cctccttctt ttggctcatt ttttaatctt tcgctggcaa
      241 acaaaaaaag atgtcagaaa aaatcagaca tcttttcaat tgattcatta ttttttactc
      301 atggacagtt catgtaaagt ggacaattct ttttccagtg tagacattag tttcttgcct
      361 tcttctggtt caattagtcc taggcgggtt gcaaagttaa tttcacgtga taaaccatac
      421 atttgtgtat caagaacttc ctcatatgct ggacattgcg gtaatgttag attatccatt
      481 tgaactttaa tcaactgtaa gattcgtttt gcgtcttgct ttaaaagctc cactgcctct
      541 tctctgtgat ctatcttttt atttgccatc acagaacccc ctatcatacg ccaaaagtag
      601 cgctttattt tcatctcaag gaaaaacctt aagtaaaagt taatact
//
LOCUS       DASEAA010000384          644 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.387, whole genome shotgun sequence.
ACCESSION   DASEAA010000384 DASEAA010000000
VERSION     DASEAA010000384.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 644)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.387"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            184..606
                     /locus_tag="U0342_003129"
     CDS             184..606
                     /locus_tag="U0342_003129"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465040.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Rrf2 family transcriptional regulator"
                     /protein_id="HEM2424439.1"
                     /translation="MKITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQ
                     LIGPLRNAGIVKSIRGAHGGYVLNGDPEKITAGDIIRTLEGPIVLVESMEDEEAAQRE
                     LWTRMRNAVRDVLDQTTLADLLKHSTDAELSDGYMFYI"
BASE COUNT          192 a          124 c          134 g          194 t
ORIGIN      
        1 gggcgcatcc ggtaagctaa aggttgaatt gccatataac cgctccttct tatttgcttg
       61 tttactatta taacataaga acatctgtgc gttcacccac ttgtttcctt tgccttcttt
      121 ctgtaattcc gatataatag atgcggtata agcggttttg aaattactgg aggttaaata
      181 aaaatgaaga ttacaacaaa aggtcgctat ggcctaacaa taacacttga actcgcaaaa
      241 agaattggtg atggcccaat ttctcttcgt agtatcgccc aagataaaaa tttatcggaa
      301 cattatttag agcagttaat cggtcccctt cgtaatgcag gaattgttaa aagtatccgc
      361 ggggctcatg gtggctacgt tttgaacggc gatcctgaaa aaattactgc aggtgacatc
      421 atccgcacac tggaaggccc gattgtactt gtcgaaagta tggaagatga agaagctgct
      481 cagcgtgaat tatggacacg aatgcgcaat gctgtccgtg acgtgttaga tcaaacaaca
      541 cttgctgact tattaaaaca ttctacggat gctgaactat cggatggtta catgttttat
      601 atttaatgaa aaaagcctat tttcgaatag gctttttatc tgcc
//
LOCUS       DASEAA010000385          635 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.388, whole genome shotgun sequence.
ACCESSION   DASEAA010000385 DASEAA010000000
VERSION     DASEAA010000385.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 635)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.388"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..89
                     /locus_tag="U0342_003130"
     CDS             <1..89
                     /locus_tag="U0342_003130"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464788.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM2424440.1"
                     /translation="EKGTVRLSHKNAVILSEILMCDLKFFYE"
     gene            213..>635
                     /locus_tag="U0342_003131"
     CDS             213..>635
                     /locus_tag="U0342_003131"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424441.1"
                     /translation="MRKKTLAVFLVFTVLVALLAPTNASAYTKLGYVMTKASAKNFKI
                     YINGSAKGFKNIIISGAKAWNPSPYLNTVSIGNDVKPNFTVSSSGTNKGSVLAVCNTT
                     YYKSNKLISKNEITLYKGFRSLSTNHKIETIVHEFGHGF"
BASE COUNT          225 a           86 c          127 g          197 t
ORIGIN      
        1 ttgaaaaagg aactgttaga ctatcacaca aaaatgctgt tattcttagt gaaattttaa
       61 tgtgcgattt gaaattcttt tatgaataac tagactagac acgggggaaa gatgtaagat
      121 gaaaagaata tctttttaac aaattatgta tggatttaat ttaaaataaa cgcacacaaa
      181 atgtgtggaa tttgagcgaa ggagtaaaca tcatgaggaa aaaaacgtta gcagtgtttc
      241 ttgtttttac ggtgttagtt gcgttattag cgccaactaa tgcaagcgca tatacaaaac
      301 ttggatatgt gatgacaaag gctagtgcaa aaaattttaa aatttatatt aacggttcgg
      361 cgaaagggtt taaaaatatt attataagcg gtgcgaaagc ttggaatcct tctccttact
      421 taaatacggt tagcatagga aatgatgtca agcctaactt tacggttagt agttcgggta
      481 caaataaggg gagtgttttg gcggtctgca acaccactta ctacaaatca aataaattaa
      541 tctccaagaa tgagatcact ttgtataaag gctttcgttc actttcaacg aatcataaaa
      601 tagaaactat tgtgcatgag tttggtcatg gcttt
//
LOCUS       DASEAA010000386          617 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.390, whole genome shotgun sequence.
ACCESSION   DASEAA010000386 DASEAA010000000
VERSION     DASEAA010000386.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 617)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.390"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(263..>617)
                     /locus_tag="U0342_003132"
     CDS             complement(263..>617)
                     /locus_tag="U0342_003132"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="VOC family protein"
                     /protein_id="HEM2424442.1"
                     /translation="TLNAKSITIGLPVSDLEKSASWYEKLLMSDEKLVPVEGVIEYQI
                     GSVWIQLFEEKINASKNVLCLEAENLEVEFERLKTLGIITNEVIEELSGILRYFDFTD
                     PDGNKLSFYWLYEQE"
BASE COUNT          216 a          128 c           73 g          200 t
ORIGIN      
        1 agccctagaa actcaataat gctgaggctt cagggctttt ttactaatac aactccataa
       61 tctgcatata agctatagat aactatcatt aataatacaa gattaaaaaa atattaaaat
      121 ctataaaacg aagacaaaaa aaaagtacac ctaatcgaaa aataatctct aacttatatt
      181 tcactccact taagcatcaa aaaacgacga atcaattatc cgtcgtttta gcgttacgct
      241 catcatataa tgctgtttaa gtctattctt gttcgtataa ccaatagaat gataacttat
      301 taccatctgg atcagtgaag tcaaaatatc gaaggatacc tgatagctct tctatcacct
      361 cgttagttat tatcccaagt gtttttaaac gttcaaattc tacttctaga ttttctgcct
      421 ctaagcacaa aacgttctta gaagcattga ttttttcttc aaaaagttga atccaaaccg
      481 aaccaatttg atattcaata accccttcaa ccggtactag tttttcatca ctcataagca
      541 gtttttcata ccagcttgca gatttctcca aatcacttac tggcagccct atagtgatac
      601 tctttgcatt taaagtc
//
LOCUS       DASEAA010000387          612 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.391, whole genome shotgun sequence.
ACCESSION   DASEAA010000387 DASEAA010000000
VERSION     DASEAA010000387.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 612)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.391"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            96..440
                     /locus_tag="U0342_003133"
     CDS             96..440
                     /locus_tag="U0342_003133"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465721.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3899 domain-containing protein"
                     /protein_id="HEM2424443.1"
                     /translation="MFLRITIYTLIQEAIIFGILLFGKNQSVSLNNYVDISFMVALIA
                     LLIGLFVYIMRSGFLDRVHNGFRSISRKIKREEENEFSDMPLSELVGLRYAGILFSSL
                     LVMLSSILCMFL"
BASE COUNT          187 a           76 c          118 g          231 t
ORIGIN      
        1 atttctaaca ttaaatgata gcttccttct atcatatagt ctttctatcc aaattgtgat
       61 agagtgaatt atgaatttta attagaggtg aagaaatgtt tttacgaatt actatttata
      121 cacttattca agaagctatt atttttggta ttttactttt cggaaaaaat cagagtgtta
      181 gtttaaacaa ctatgtggat atttccttta tggtagcact tatcgcgctc ctaattggat
      241 tgtttgttta tattatgaga agtgggtttt tagaccgcgt tcataatggt tttcgaagta
      301 tttctcgcaa aattaaacga gaagaagaaa atgagttttc agatatgcct ttatctgaat
      361 tagtcggtct tcgatacgct gggattttgt ttagttccct acttgttatg ctatctagta
      421 ttctatgtat gtttttgtaa ttgacaagcc gttttgtaaa ctgatagaat aaaagtaata
      481 taactgatgc gttaatagga agattagtac attttgttgc tttataatag agagtctgtg
      541 gttggtggaa acagataaag cgcaaaatcg aatggacttc taaggactgt ttgtgaaagc
      601 cagtagcgaa ca
//
LOCUS       DASEAA010000388          610 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.392, whole genome shotgun sequence.
ACCESSION   DASEAA010000388 DASEAA010000000
VERSION     DASEAA010000388.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 610)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.392"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            25..270
                     /locus_tag="U0342_003134"
     CDS             25..270
                     /locus_tag="U0342_003134"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424444.1"
                     /translation="MNKLLLTLGFVLIPLLVIFALFMTNSVETQITLMCVALVTAIII
                     GFKAEAFKYDYTTFLFFLYLASFLGILCLIQFLFHVL"
BASE COUNT          193 a           74 c           94 g          249 t
ORIGIN      
        1 agtagtctgg agggttattt gcgagtgaat aaattattat taacgttagg ttttgtctta
       61 attccgttac ttgttatatt tgcactattt atgacgaatt cagttgaaac tcaaattact
      121 ttgatgtgtg tagccctagt taccgcaatt attataggtt ttaaagctga agcatttaaa
      181 tatgattata cgactttttt attttttctt tatttagctt cttttttagg tattctatgt
      241 cttattcaat ttctttttca cgttttataa tttattaata ttctcgaaag gttgattaaa
      301 catgaactgg agaaaaaaac gagatatctg taacgaaaat ccggtaattc aagaaataaa
      361 aaaatacaat agagttcgtc tatttttata tcttataggg acagtagccc tcataggttg
      421 gataatctgg gttttaaaat cattttattc tatttatgaa atatgtgtat tagaatttat
      481 ttcttcagta tctgagtttg gattatttgg gtcagcagaa tctacacaaa aacaattgat
      541 gagtttaagt tttattatac tcatactgat tataatggca actactccat atctatatat
      601 agatatgact
//
LOCUS       DASEAA010000389          607 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.393, whole genome shotgun sequence.
ACCESSION   DASEAA010000389 DASEAA010000000
VERSION     DASEAA010000389.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 607)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.393"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>607
                     /locus_tag="U0342_003135"
     CDS             <1..>607
                     /locus_tag="U0342_003135"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="S8 family serine peptidase"
                     /protein_id="HEM2424445.1"
                     /translation="IHVWNLSLGSNEEVNRNFISAEGAILDQIQFENDIIFVIAGTNK
                     KSSETDKRIGAPADSINSMIVNSVGLNKEPANYSRQGIVLSFFTKPDVSYYGGTAEDY
                     MVVCEPLGKAYVTGTSYAAPWIARKLSYLIDIIGLSKEVAKALLIDSAIGWKDNSKFD
                     SLAIKGHGVVPIRIEDIINSPDDEIQFVVSGISEKYDTFNY"
BASE COUNT          219 a           84 c          122 g          182 t
ORIGIN      
        1 atatccacgt ttggaacctg tcattgggat ctaatgaaga ggttaacaga aactttatat
       61 ctgctgaagg agcaattctt gatcagattc aatttgaaaa tgatattatt tttgtaattg
      121 ctggaaccaa taaaaaaagt agcgaaactg ataaacggat aggtgcacca gctgattcaa
      181 taaattcaat gatagtaaat tctgtaggac taaataaaga acctgcaaat tattctcgac
      241 aaggaattgt gttatcattt tttacaaaac cagatgttag ctactatgga ggaactgctg
      301 aggattatat ggtagtatgc gagccactag gaaaagcata tgtaacaggg acatcatatg
      361 cagcgccttg gatagctaga aagttatctt atttgattga tattatcggt ctaagtaaag
      421 aggtagccaa agctctattg attgattcag ctattggctg gaaagacaac tccaaatttg
      481 atagtttggc aataaaagga catggagttg tgcctataag aattgaagat attataaatt
      541 caccagatga tgaaattcaa tttgtagtat caggaatttc agaaaaatat gacaccttca
      601 attatag
//
LOCUS       DASEAA010000390          602 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.394, whole genome shotgun sequence.
ACCESSION   DASEAA010000390 DASEAA010000000
VERSION     DASEAA010000390.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 602)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.394"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            107..412
                     /locus_tag="U0342_003136"
     CDS             107..412
                     /locus_tag="U0342_003136"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463992.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="LPXTG cell wall anchor domain-containing
                     protein"
                     /protein_id="HEM2424446.1"
                     /translation="MKRKLVLAMVLISFCGMFLLSPERVQASQTVVEVFISEDDLDVS
                     EENIQEIPKKELAASSDKDNKQPILPKAGDTVTNYTLLGLVLVLIWLIMQRKRKKKE"
     gene            488..>602
                     /locus_tag="U0342_003137"
     CDS             488..>602
                     /locus_tag="U0342_003137"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463993.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2424447.1"
                     /translation="MARIEYGEEIQKSLLVLYSRGSTIDSICKEYGIPRYEF"
BASE COUNT          211 a           98 c          129 g          164 t
ORIGIN      
        1 tcaaattgga aaccctcaag gagacaaaaa agctggagca tatcaaacaa cgttaacttt
       61 tacagctgct tttaaataag aaattacgaa aggagttgtg catttcttga aaaggaaatt
      121 agttctggca atggtactaa tcagcttttg tgggatgttc ctcttatcgc ctgaacgagt
      181 tcaagctagt caaacagtgg ttgaggtgtt catttcagag gatgatttgg atgtcagtga
      241 agaaaacata caggagatcc ctaaaaaaga actggcagcc tcttcagata aggataacaa
      301 acaacccata ttacctaaag caggtgatac agtaactaac tataccttat tgggtttagt
      361 gctcgtcctt atttggttga taatgcaaag aaaaaggaag aagaaggaat aaccccctgt
      421 gacatcatca taatgtagta agtaaaaagg atataaaaat ttctgtgtta gataggaagt
      481 gacaggtatg gctcgaatcg aatatggaga agaaattcaa aaaagcctac tggttttata
      541 ctctaggggg tctaccatag actctatctg caaggagtat ggtatccctc gttacgaatt
      601 tc
//
LOCUS       DASEAA010000391          601 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.395, whole genome shotgun sequence.
ACCESSION   DASEAA010000391 DASEAA010000000
VERSION     DASEAA010000391.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 601)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.395"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            14..>601
                     /locus_tag="U0342_003138"
     CDS             14..>601
                     /locus_tag="U0342_003138"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464776.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Crp/Fnr family transcriptional regulator"
                     /protein_id="HEM2424448.1"
                     /translation="MKQNILNNYVSTNDFPVITRGKRKYLTYEGLEDSYVYILKKGII
                     KTSIISRDGREFNLNYINKMDIISLLKDEYSQFANAPFNIRVESDTAELYQVDRVRFW
                     KDVNRDVDLQIYVKDYYRTRLLQSIKKMQQMLMNGKLGAICTQLYELYTLFGVEIAPD
                     QYLIDFLVSNEEIGHFCGINSASSVNRIFQQLKKEG"
BASE COUNT          212 a           84 c          127 g          178 t
ORIGIN      
        1 ggaggttaag aacatgaagc aaaatattct taataattat gtgagcacaa atgattttcc
       61 agttattaca aggggaaaac gtaaatattt aacttacgaa ggacttgaag attcatatgt
      121 gtacatactt aaaaaaggga ttattaaaac gagtattatt tcaagggatg gcagggaatt
      181 taatttaaac tacattaata aaatggacat tatctcactt ttaaaagatg agtattcgca
      241 gtttgccaat gcgccgttta acattcgtgt ggagtcagac acagcagaac tatatcaagt
      301 tgaccgggta aggttttgga aagacgtgaa tcgtgatgtg gatttgcaaa tttatgtgaa
      361 agattattac cgtacgaggc tgctacaatc cataaaaaaa atgcagcaaa tgctaatgaa
      421 tgggaaactt ggagcaattt gtacgcaact ctatgaactt tatacgcttt ttggagtgga
      481 aattgcgcct gatcagtatt tgattgattt tctagtaagt aatgaagaaa ttggtcattt
      541 ttgcgggatt aactccgcaa gcagtgtgaa ccggattttc caacaactca aaaaagaagg
      601 c
//
LOCUS       DASEAA010000392          587 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.397, whole genome shotgun sequence.
ACCESSION   DASEAA010000392 DASEAA010000000
VERSION     DASEAA010000392.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 587)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.397"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>587
                     /locus_tag="U0342_003139"
     CDS             <1..>587
                     /locus_tag="U0342_003139"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003726065.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="DNA adenine methylase"
                     /protein_id="HEM2424449.1"
                     /translation="ACLIESVSHVSNTAGVYGAFLKRWDSRALKDIKFIEVISYEKKN
                     IKADFYNSKLEDIIEDVECDVLYLDPPYTQNQYGTQYHLLETLVLYDNPSISPVTGSR
                     KTAPMRSDWSKNFKSHILLDKILAKTKAKYVVLSYNVDGFMSKQFIETCFKRYGKIET
                     YQCEKISYKKYRNFKTKRENEHFEYLFFIEKKDIN"
BASE COUNT          214 a           89 c          101 g          183 t
ORIGIN      
        1 tgcgtgttta atagaatccg tttcccatgt atcaaacact gccggggtat atggtgcatt
       61 cctcaagcgt tgggactcca gagcgcttaa agatatcaaa tttattgagg ttatttccta
      121 tgaaaagaaa aatataaaag ctgattttta caattcaaaa cttgaagata taattgaaga
      181 tgttgaatgt gacgtattat atcttgaccc tccttataca caaaatcagt acggcacgca
      241 gtaccatttg ttagaaactc tggttttata tgataatccg tctatcagcc ccgttaccgg
      301 atctagaaaa actgctccaa tgagatcaga ctggtcaaag aactttaaat ctcatattct
      361 cctagataaa attttagcta aaacaaaggc taaatatgtt gtattaagtt acaatgtgga
      421 tggttttatg tcaaaacagt ttatagaaac ttgctttaaa aggtatggta aaatagagac
      481 atatcaatgt gagaaaattt catataaaaa gtatcgtaat tttaaaacaa aaagggaaaa
      541 cgaacacttt gaatacctat tctttattga gaagaaggat attaatg
//
LOCUS       DASEAA010000393          580 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.399, whole genome shotgun sequence.
ACCESSION   DASEAA010000393 DASEAA010000000
VERSION     DASEAA010000393.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 580)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.399"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(125..>580)
                     /locus_tag="U0342_003140"
     CDS             complement(125..>580)
                     /locus_tag="U0342_003140"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003721649.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424450.1"
                     /translation="QKLAVSFILCFITMLTTLLLNFILVSIVFLGGTYKMGLNGLGSL
                     NTLFDFSIQNPYLADFGFGFMACLMAGMAGLIATSSSLFFLNKKFAYPAAFFIWFLMI
                     LPNNSIMFIFQPFTEYGFEIILPIFLVFSLIVLIIVGVLYLYEVKYVKE"
BASE COUNT          254 a           89 c           85 g          152 t
ORIGIN      
        1 atacaaacta ccattcataa tgagaacaag ttctctgttt ttagggaaac ttaggtaatc
       61 catgttttgt gtgaaccaaa aaacagaaaa aaagaggaac atggaaaaaa ttagaagaaa
      121 atatctactc tttaacatat ttcacctcat ataagtaaag gacaccaaca attatcaaaa
      181 ctattaaact gaaaactaga aaaataggca aaattatttc aaagccatat tctgtaaaag
      241 gttggaaaat aaacataatt gaattgtttg gaagtatcat cagaaaccaa ataaaaaatg
      301 cagctggata cgcaaatttt ttattcaaaa agaacagact ggagctagtg gcgataagtc
      361 cagccattcc ggccattaag caagccataa atccaaaacc aaaatctgct aagtaggggt
      421 tttgaatgct aaaatcaaat agagtattaa gcgatcctaa tccatttaac cccattttat
      481 aagtgccacc taagaataca atagaaacta aaataaaatt taataataaa gttgtaagca
      541 tggtgataaa acaaagaata aaacttacag ctaatttttg
//
LOCUS       DASEAA010000394          575 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.400, whole genome shotgun sequence.
ACCESSION   DASEAA010000394 DASEAA010000000
VERSION     DASEAA010000394.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.400"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            3..>575
                     /locus_tag="U0342_003141"
     CDS             3..>575
                     /locus_tag="U0342_003141"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724642.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="AAA family ATPase"
                     /protein_id="HEM2424451.1"
                     /translation="MKKKNVLNLIKYHSEKNDFQFRNEAIEIARYFDTIGDSQLSEYI
                     MSLLSTANTFVPQGEAFENLFFKKIEPNVEPLPLPKAISEDIRGIINAVNHHVGINKF
                     LFEGAPGTGKTETVKQIARLLERQLYMVEFSELIDSKMGQTAKNIVAVFNEINRVSNP
                     SKLLILFDEIDAIALDRVNSNDLREMGRVTS"
BASE COUNT          220 a           82 c          105 g          168 t
ORIGIN      
        1 ctatgaagaa aaagaatgta ttaaatttaa ttaaatatca ttcagaaaaa aatgattttc
       61 agtttagaaa tgaggctatc gaaattgctc gctattttga tacaataggt gacagtcaat
      121 tatcggaata catcatgagt ttgttatcta cagcaaatac ctttgtgccg caaggtgagg
      181 cttttgagaa cttatttttc aaaaaaatag aacctaatgt agaaccatta ccactcccta
      241 aagcaattag tgaagatatt cgaggtatta taaatgctgt aaatcatcat gtaggaataa
      301 ataaatttct cttcgagggt gcacctggaa ctggaaagac agaaacggtt aaacagattg
      361 ctcgattatt agaacgccaa ctatatatgg tagaatttag cgaattaatt gatagtaaaa
      421 tggggcaaac agctaagaac attgtagcag tgttcaacga aataaatcgt gtatcaaatc
      481 catcaaaatt attaatactt ttcgatgaaa tagatgctat agccctagat agagtaaact
      541 ctaatgactt aagagaaatg ggacgggtaa catct
//
LOCUS       DASEAA010000395          575 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.401, whole genome shotgun sequence.
ACCESSION   DASEAA010000395 DASEAA010000000
VERSION     DASEAA010000395.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 575)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.401"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            110..316
                     /locus_tag="U0342_003142"
     CDS             110..316
                     /locus_tag="U0342_003142"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734973.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424452.1"
                     /translation="MRPYSFNDFRYICYVEGKDKAIEKLFASLRTDKEIAILNKRIQK
                     DTINIENVYKEYLRGINGAEQNNI"
BASE COUNT          216 a           93 c          103 g          163 t
ORIGIN      
        1 tagttccagt ccacattgat aacgaaaaac acattgtgca gcttgaaaga tttgacgaac
       61 gaataattga cattaatata gaagatattg ttttctgcga ggttatgaca tgagaccata
      121 tagctttaat gattttagat acatctgcta cgtagaagga aaagataaag ctatagaaaa
      181 actatttgct agtttgcgga cagacaaaga aattgctata ctaaacaaaa gaatacaaaa
      241 ggatacaatt aatatagaaa atgtttataa agaatacttg cggggcataa atggggcaga
      301 gcaaaacaac atataaatac ttatagcttc ttgtaacagc ttttaaaaag gcataaaccg
      361 cgtaacaaag ccgatttctt cccgtgaatg cgtataactg ctcaacacaa aaccaactct
      421 taatcagcgg gtcgggggtt cgaaaccctc acaacccata aaaaacaaac gccagtgact
      481 gttaaagtcg ttggtgtttt gtcgttttta cgggcaaaat gttaataatt tcaataataa
      541 gctgatttct ttttgattat ttatcgatta catag
//
LOCUS       DASEAA010000396          571 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.402, whole genome shotgun sequence.
ACCESSION   DASEAA010000396 DASEAA010000000
VERSION     DASEAA010000396.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 571)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.402"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..316
                     /locus_tag="U0342_003143"
     CDS             <1..316
                     /locus_tag="U0342_003143"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010990847.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="XRE family transcriptional regulator"
                     /protein_id="HEM2424453.1"
                     /translation="RMPDAEIQNKIANYFDVSLDYLHGRSRHKNINAEGFTPKEEIDM
                     KKRMDALREDLKNGDGLLYDGEPITTEAMESILDAMEFAEKQATRINRKYAPKDKKNN
                     IE"
     gene            333..>571
                     /locus_tag="U0342_003144"
     CDS             333..>571
                     /locus_tag="U0342_003144"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731470.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ImmA/IrrE family metallo-endopeptidase"
                     /protein_id="HEM2424454.1"
                     /translation="MWPTAMIEKLRNKHHTSDPFELCEILNIIVTPWDLANDTNGFYK
                     YVRRNRFIFYNSNLPDHQIKYVVAHELGHAVLHTR"
BASE COUNT          220 a           86 c          112 g          153 t
ORIGIN      
        1 aagaatgccc gatgctgaaa ttcagaataa aatagctaac tattttgatg taagtctgga
       61 ctatttacat ggcagaagtc gccataaaaa tataaatgca gaaggtttca ctcccaaaga
      121 agaaatagat atgaaaaaaa gaatggatgc tcttagagaa gatttgaaaa acggggacgg
      181 attactttat gatggtgagc cgattacaac cgaagccatg gaaagtattt tagatgcaat
      241 ggaattcgct gaaaaacaag caactcgtat caatagaaag tacgcgccta aagacaaaaa
      301 aaataatata gagtaaatcg ggggtattct atatgtggcc aactgcaatg attgaaaaac
      361 ttagaaataa acatcacaca tctgatccat ttgaattatg cgaaatacta aatattattg
      421 ttacgccttg ggatttggcc aacgatacta atggcttcta taagtatgtg cgtagaaata
      481 gattcatttt ttacaatagc aatttacctg atcatcaaat taagtatgtt gtagcacacg
      541 aattgggaca tgcagtacta catacgagga t
//
LOCUS       DASEAA010000397          570 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.403, whole genome shotgun sequence.
ACCESSION   DASEAA010000397 DASEAA010000000
VERSION     DASEAA010000397.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 570)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.403"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(35..466)
                     /locus_tag="U0342_003145"
     CDS             complement(35..466)
                     /locus_tag="U0342_003145"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465181.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="Lmo1656 family SNX6-recruiting virulence factor"
                     /protein_id="HEM2424455.1"
                     /translation="MNRKMRLLKGLMAFIVGVSIIATPIITVYAASNKVAISMNRRAV
                     NGATNGKYHSLNKGTVKLKVSAKGFGNSNPNSWVTLHKEKFGIDDYFGRVSISSGKNY
                     FYKNKTKEFPTKANAKSSKYYLKAEKAMDWYTVKIEGTISN"
BASE COUNT          161 a          112 c           81 g          216 t
ORIGIN      
        1 ccagaaaatc taagcatgtt aactctccta attcttagtt actaatggtt ccttcgattt
       61 tcactgtgta ccaatccatc gctttttcag cttttaaata gtatttactt gatttcgcat
      121 ttgcttttgt tggaaattct tttgtcttat ttttataaaa ataattcttt cctgaagaaa
      181 tactgactct gccaaaataa tcatctattc caaatttctc tttgtgcaaa gttacccacg
      241 agttggggtt actattcccg aaacctttag ccgaaacttt caatttaacc gttcctttgt
      301 tcaatgaatg atattttcca tttgtagcac catttacagc tcgacggttc atcgaaatgg
      361 ctactttatt acttgctgca tagactgtaa taattggggt tgctataatg cttacaccta
      421 caatgaaagc cattagtcct tttaataatc tcatctttct gttcatcttg ttgcctcctt
      481 tttgtaatca atagttgcaa tgcaagagta tcataaaaaa gcgatgtata accaaaaatg
      541 taatgaaatg tccgattctt gtcgtgaacg
//
LOCUS       DASEAA010000398          560 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.404, whole genome shotgun sequence.
ACCESSION   DASEAA010000398 DASEAA010000000
VERSION     DASEAA010000398.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 560)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.404"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..>560)
                     /locus_tag="U0342_003146"
     CDS             complement(<1..>560)
                     /locus_tag="U0342_003146"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HEM2424456.1"
                     /translation="NINIAQYTFLDERDLNIYASNPQYSPNIKLEKGDYPDKNRFLVN
                     RESGDEKQSGVIYHPSKYWSLKVYDFGQIKNVGLSDTFYVSGLDNQDTYQAFLKEFEQ
                     YGEITTKSVDVSWWKYINIPLLMTLLLCFAILFVFTYYYLRYSKQRLLVNRIWGNSEL
                     VTLMSLFNKTIIFTLFSVLAILITFV"
BASE COUNT          208 a          107 c           69 g          176 t
ORIGIN      
        1 ctaacaaaag ttatcagaat tgctaacaca ctaaacaaag taaatattat agttttattg
       61 aacaaagaca ttaatgtaac taattcagaa ttcccccata tacgattaac taataaccgt
      121 tgtttagagt atcttaaata gtaatatgta aaaacaaaca aaatagcaaa acacaaaagc
      181 aaagtcataa gtaacgggat attaatatat ttccaccagc tcacatcaac actttttgta
      241 gttatttccc cgtactgttc aaattccttt aaaaaagcct gatacgtatc ctggttatct
      301 aagccgctta cataaaaagt atcacttaga cccacatttt taatctgtcc aaagtcataa
      361 acctttaaag accaatactt agaaggatga taaatcacac ccgattgttt ttcatcgcca
      421 ctttcccgat tcaccaaaaa ccgattttta tcgggataat ctcctttttc aagctttata
      481 tttggtgaat actggggatt agaggcataa atattcaaat cgcgttcatc taaaaatgta
      541 tactgcgcta tgttaatatt
//
LOCUS       DASEAA010000399          552 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.405, whole genome shotgun sequence.
ACCESSION   DASEAA010000399 DASEAA010000000
VERSION     DASEAA010000399.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 552)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.405"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            219..>552
                     /locus_tag="U0342_003147"
     CDS             219..>552
                     /locus_tag="U0342_003147"
                     /inference="COORDINATES: ab initio
                     prediction:GeneMarkS-2+"
                     /note="Derived by automated computational analysis using
                     gene prediction method: GeneMarkS-2+."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424457.1"
                     /translation="MSSEQVAQADTRLGTDIYAEGKLGYAYDIYKKPMGSKNNKRIRG
                     TKTDYGKLYRLRSYEKVNNKTSYKAYLNGKFQGYIDTRAFITVKSLDNVTSLVLPSFK
                     TNTRNVYAE"
BASE COUNT          208 a           65 c          100 g          179 t
ORIGIN      
        1 agaattaaat atttctatgg atgaagtgta tgaacaactg ctcaagtatc aaagcgaaaa
       61 ttaagtattg actttcggtt ctatagagct tataatagtt ctatagaacc gaatatataa
      121 aagggagatg ctttgatatg cgtttgaata agcagtgttt aaagaataat tatttagtta
      181 aaattctatt attagtcctt cttgttggaa tatttacaat gagttcagag caagtagcac
      241 aagcagatac tcgcttagga actgatatct atgctgaagg gaagctaggt tatgcatatg
      301 atatttataa gaaacctatg ggaagtaaga ataacaaaag aattagggga actaaaactg
      361 attacggtaa attatatcgt ttaagaagtt atgagaaagt taataacaaa acttcttata
      421 aagcttattt aaatggtaaa ttccaaggat atattgatac gcgtgctttt attactgtaa
      481 aatccttaga taatgtgact tctttggtat taccttcctt caaaactaat acaagaaatg
      541 tatacgcaga ag
//
LOCUS       DASEAA010000400          550 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.406, whole genome shotgun sequence.
ACCESSION   DASEAA010000400 DASEAA010000000
VERSION     DASEAA010000400.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 550)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.406"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            325..>550
                     /locus_tag="U0342_003148"
     CDS             325..>550
                     /locus_tag="U0342_003148"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464002.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424458.1"
                     /translation="MQKDTYNGIRLSVIQLIDSKKENLKENNIKLTIIKNEKDGYVVE
                     LDNDKCMAEIVVEEPTYAPYRYISFEVVSLM"
BASE COUNT          207 a           65 c          108 g          170 t
ORIGIN      
        1 aaacgaatgt ggtagggcat tattaaaaaa actagtataa actaaaagac cttgctcaaa
       61 gattagcaag gtcttagact ggggaagaaa aagtcttctc tttttctgtt ttatggaaat
      121 gttattccgt attttagacg agtttcttct atggaagaat acacaatttt agggaatgtg
      181 tctgatatgg cagctagatt ctctgatagt gaataagatt tgaaattacc taatgtttac
      241 tacagtgaaa agcaaattag agaagaagtg actcgttctt tagaagcttt agcttgaatc
      301 ataaaatttg agaggaacgt aattatgcaa aaagatacat ataacggcat tcgattgagt
      361 gtaatccaat tgatagattc aaaaaaagaa aatctgaagg agaataatat aaaattaaca
      421 attataaaga atgaaaaaga cggttatgtt gtagaactgg ataatgacaa atgcatggca
      481 gaaattgtag ttgaagaacc tacttatgcc ccatatcgct atatttcatt tgaagtagtt
      541 tctttgatgg
//
LOCUS       DASEAA010000401          545 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.407, whole genome shotgun sequence.
ACCESSION   DASEAA010000401 DASEAA010000000
VERSION     DASEAA010000401.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.407"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>545
                     /locus_tag="U0342_003149"
     CDS             <1..>545
                     /locus_tag="U0342_003149"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463988.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2424459.1"
                     /translation="SKSQKKVALLEKIFYAENHTSTQEELLNDLNITYPTLISTIKTI
                     NFDIERFGYKAFSIVHSAPNLSYTLKISDNCSIQLIINAYIRESPKFQILETLLLSSF
                     PNLQVLANEVHVSYSGIKKEIKELNEELRERNLYISTGSQVEITGDEFSLRIFYTFLF
                     LVAYSGDRWPFSFVKYDEITD"
BASE COUNT          187 a           93 c           91 g          174 t
ORIGIN      
        1 attcaaaaag ccaaaaaaag gtagcgcttc ttgagaagat tttttatgcg gaaaatcata
       61 caagtacaca agaggaacta ttaaatgatt tgaacattac gtatccaacc ctcatttcta
      121 cgattaaaac aattaatttt gatattgaac gatttggata caaagcgttt tcgattgttc
      181 actccgcgcc aaatttgtcc tataccttaa aaatatcgga taattgtagt attcaactca
      241 ttatcaacgc ctatattaga gagtcaccca aatttcaaat tctcgaaact ttattgctgt
      301 cttccttccc taacttacaa gtattggcaa acgaagtaca tgtttcttat tctgggataa
      361 agaaagaaat aaaggaattg aatgaagagc taagggaacg gaacttgtat atttctacag
      421 gaagtcaggt agaaataaca ggggatgaat tttcattaag aatattctat accttcctct
      481 ttttagtcgc atatagtggg gatcgttggc ccttttcttt tgttaaatat gatgaaatca
      541 ccgac
//
LOCUS       DASEAA010000402          545 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.408, whole genome shotgun sequence.
ACCESSION   DASEAA010000402 DASEAA010000000
VERSION     DASEAA010000402.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 545)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.408"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            57..221
                     /locus_tag="U0342_003150"
     CDS             57..221
                     /locus_tag="U0342_003150"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724645.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424460.1"
                     /translation="MSDFIEKNAQNYIKELFQQITEEQLTELVTTFSHGFKLGMQLAF
                     DAIVTREKGK"
     gene            222..518
                     /locus_tag="U0342_003151"
     CDS             222..518
                     /locus_tag="U0342_003151"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724760.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424461.1"
                     /translation="MNFEFKTNQFSLLVKPDLSVHLQKISEVGDRVELVVQTKFCSYS
                     INIEDTKKLQILLPLLQLEVQTILATYQLQLITNSFNIQDNTCYFDFTTKEVSL"
BASE COUNT          203 a           64 c          100 g          178 t
ORIGIN      
        1 tttcgtaata gggaattatt tcgctataag gaatttttga gggaggtgag taaattatga
       61 gtgattttat tgagaagaat gcacagaact atattaagga gctgtttcag caaataactg
      121 aagaacaact aactgaatta gttacaacat tttcacatgg ctttaagcta ggtatgcaac
      181 tagcttttga tgcaattgtg acaagggaga aggggaagta aatgaacttt gaatttaaga
      241 ctaaccaatt ttcactgtta gtaaaaccag atttatctgt acatcttcaa aaaataagtg
      301 aagttggtga tagggtggaa ttagttgttc aaactaaatt ttgtagttat tcaattaata
      361 ttgaagatac aaagaaatta caaatcttat taccgttgct acaattagaa gtacaaacta
      421 ttttggcaac atatcagcta caattaataa ctaatagttt taatatacag gataatacct
      481 gctattttga tttcactact aaagaggtga gtttatgatg gagcattata caatagaaca
      541 agatt
//
LOCUS       DASEAA010000403          540 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.409, whole genome shotgun sequence.
ACCESSION   DASEAA010000403 DASEAA010000000
VERSION     DASEAA010000403.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 540)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.409"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..135)
                     /locus_tag="U0342_003152"
     CDS             complement(<1..135)
                     /locus_tag="U0342_003152"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003725646.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF2705 domain-containing protein"
                     /protein_id="HEM2424462.1"
                     /translation="MKNNKLIILVVICLFLQAILFMAFDFPFKTLPILDGFPVGLATP
                     V"
     gene            complement(137..>540)
                     /locus_tag="U0342_003153"
     CDS             complement(137..>540)
                     /locus_tag="U0342_003153"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_014931048.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="WxPxxD family membrane protein"
                     /protein_id="HEM2424463.1"
                     /translation="LYLSVNLLYSFIFLSNKLLTATHFYSGIFFYFLLLVLFYLAIGF
                     LFRIIYDLTTSTGQALIFGAFVICIVYLIDWIILEGIYWTPLHNLNFFDLWLQNGSIS
                     SDIPFILIPNAAVAFILYLISSNTFIKKDFY"
BASE COUNT          230 a           74 c           89 g          147 t
ORIGIN      
        1 taccggtgtg gctaatccta ctggaaatcc atctagtatt ggtaatgttt tgaacgggaa
       61 gtcaaaggcc atgaataata ttgcttgtag aaacaaacaa ataactacta aaatgataag
      121 tttattattc ttcatactag taaaaatcct tttttataaa ggtattagaa ctaatcaagt
      181 ataggataaa tgctaccgcg gcgtttggaa ttagaatgaa cggtatatca gaactaatag
      241 aaccattttg taaccaaaga tcaaagaaat ttaaattgtg aagaggtgtc cagtatatac
      301 cttctaaaat tatccaatca ataagataaa caatgcatat cacgaaagct ccaaagataa
      361 gcgcttggcc agttgaagta gttaagtcat atataattct gaaaagaaaa ccaatagcta
      421 aataaaagag aacaagtagc aagaagtaaa aaaaaattcc actataaaaa tgagtagcag
      481 tgagcaattt attacttaga aaaatgaaag aatatagcaa atttacgcta agatataaac
//
LOCUS       DASEAA010000404          531 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.410, whole genome shotgun sequence.
ACCESSION   DASEAA010000404 DASEAA010000000
VERSION     DASEAA010000404.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 531)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.410"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..446
                     /locus_tag="U0342_003154"
     CDS             <1..446
                     /locus_tag="U0342_003154"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466296.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2424464.1"
                     /translation="NEMEYQPKKEVMTLKKEVLGFIFQNYLLMENETVLENLSITGGK
                     NRKLMIEHLEEVGMDESYLAKKVYQLSGGEKQRIAIVRILLKPFQLLLADEPTGNLDD
                     KNKHKIIELFLALKKQGKTIICVTHDPEISAKADRIIYIEGGEIR"
BASE COUNT          207 a           71 c          100 g          153 t
ORIGIN      
        1 ttaacgagat ggaatatcag ccgaaaaaag aggttatgac tctaaaaaaa gaggtgttag
       61 gttttatatt ccaaaattat ctattgatgg aaaatgaaac agtgttagaa aacttatcca
      121 ttacaggtgg aaaaaatcgc aagctgatga tagagcattt agaagaagta ggaatggatg
      181 aaagctattt agcaaaaaaa gtataccaat taagcggtgg agaaaaacaa cggattgcta
      241 ttgtgcgcat tttactcaaa ccatttcagt tattacttgc ggacgaacca acaggcaact
      301 tggatgataa aaacaaacac aaaatcattg aattattttt agcgttgaaa aaacaaggta
      361 aaacaatcat ttgtgtcaca catgacccag aaatatctgc aaaagcagat cgaatcattt
      421 acattgaagg aggcgaaata agatgaaaat tatcggtatt tctttagtaa atagtctttt
      481 aatactctta gtggtgctta ttcataaaat tttctttagg gtattattgc t
//
LOCUS       DASEAA010000405          515 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.412, whole genome shotgun sequence.
ACCESSION   DASEAA010000405 DASEAA010000000
VERSION     DASEAA010000405.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 515)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.412"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(51..455)
                     /locus_tag="U0342_003155"
     CDS             complement(51..455)
                     /locus_tag="U0342_003155"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464258.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF4064 domain-containing protein"
                     /protein_id="HEM2424465.1"
                     /translation="MNPRKSEFVLTLIAGITGIIAGITGIAGGGLLAALSGSEELSNA
                     TAMTAADSEALAAAGGLTVIFSIIALVLGIALIVFAVLIKRNAKVFGILTLVAGVVGF
                     FLVGLLWIVPGVLAVIAGIMCLARKVPTDTFS"
BASE COUNT          186 a          113 c           77 g          139 t
ORIGIN      
        1 aaaaactgca acagaatgat tcctcatcct attacagtct agcattaaga ttagctaaat
       61 gtgtcagttg gtacttttct cgctaggcac ataatacctg caataacagc aagtacacct
      121 ggaacgatcc atagtaatcc tactaagaag aaacctacaa caccagctac tagcgtcaag
      181 ataccgaata ctttagcatt gcgtttaatt aatacagcaa aaacaatcaa agcaatacca
      241 agcactaaag caattataga gaaaattact gttaaaccac ctgcagcagc aagtgcttca
      301 gagtcagcag cagtcatcgc agttgcgtta gataattctt cactgccaga aagagcagca
      361 agtaaacctc cgcccgcgat tccagtaata ccagcaataa tacctgtaat tcccgcaatt
      421 aatgttagaa caaattctga ttttcttgga ttcattatga tataaacctc ccttttaaaa
      481 tagtcattta ttagtataac attaattttg ctaga
//
LOCUS       DASEAA010000406          514 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.413, whole genome shotgun sequence.
ACCESSION   DASEAA010000406 DASEAA010000000
VERSION     DASEAA010000406.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 514)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.413"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..301
                     /locus_tag="U0342_003156"
     CDS             <1..301
                     /locus_tag="U0342_003156"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464871.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="type II secretion system F family protein"
                     /protein_id="HEM2424466.1"
                     /translation="AIARQILPTLEQGLSLTKALEKMPIFERELYYIAIHGEKNGNLA
                     EEFLFYYNLCHQKSLQKTEKLFSFIQPIVFIVIGILIVSIYLSILYPMFSMVNQI"
     gene            316..>514
                     /locus_tag="U0342_003157"
     CDS             316..>514
                     /locus_tag="U0342_003157"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464870.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="prepilin-type N-terminal cleavage/methylation
                     domain-containing protein"
                     /protein_id="HEM2424467.1"
                     /translation="MFKKKIDWRDERGFTLVEMLIVLLVVSVLLLLTIPNIVSQSKSI
                     NDKGCEAFISMVQGQVQSYQLD"
BASE COUNT          174 a           77 c           83 g          180 t
ORIGIN      
        1 agcaatcgcc aggcaaatcc ttcctacgct tgaacaagga ttatcactaa caaaagcact
       61 agaaaaaatg cctatatttg aaagagaact ttattacatt gctatccacg gtgaaaaaaa
      121 tggtaattta gcagaagaat ttttatttta ttataactta tgtcatcaga aatcacttca
      181 aaagaccgaa aaattatttt catttatcca accaattgtt tttatcgtta ttggtatttt
      241 aattgtatcc atttatttat ccattttata tcccatgttt tctatggtaa atcaaattta
      301 aaaggaggag ttttaatgtt taaaaagaaa attgattggc gagatgagcg aggctttact
      361 ttggtggaga tgttaattgt attgttagtg gttagtgttt tgttactcct tactattccc
      421 aacatagtat cacaaagtaa gtcaatcaac gataaaggat gcgaggcctt tatttcaatg
      481 gttcaaggtc aagttcagtc ctaccaatta gata
//
LOCUS       DASEAA010000407          505 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.414, whole genome shotgun sequence.
ACCESSION   DASEAA010000407 DASEAA010000000
VERSION     DASEAA010000407.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 505)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.414"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(160..504)
                     /locus_tag="U0342_003158"
     CDS             complement(160..504)
                     /locus_tag="U0342_003158"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003764803.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424468.1"
                     /translation="MQLSKAEVLASKVSDEIEERLGDKISSSFSIYKTQDEPWIEFSI
                     EFSAYNFFNIILNYDRGSFGCSIVNGGLGIAQTNTQKWYDKADMDIFCKELQEQLELR
                     IPDKFLVYNGWK"
BASE COUNT          163 a          100 c           53 g          189 t
ORIGIN      
        1 cttgatttac gataccttct aatcgttctc ttacctctat actattcgtg gacttattgt
       61 ctgttataaa atagcctgta cttaaaaaat tcgttaagga ttctatcata agtataaata
      121 ccacctacat tgtagctttc atcaaattaa caagtctatt tatttccaac cgttgtacac
      181 taaaaattta tctggaattc ttaattcaag ctgttcctgt agttctttgc aaaaaatatc
      241 catgtctgct ttgtcatacc atttttgggt attagtttga gcaataccta accccccatt
      301 tacaatacta catccaaagg aaccgcgatc ataattcaat atgatattaa aaaaattata
      361 tgccgaaaat tctatactaa actctatcca tggctcatct tgtgttttat aaattgaaaa
      421 agaagaacta attttatcac ccaatctttc ttctatttca tcactaactt ttgaagctaa
      481 tacttctgct ttacttaatt gcata
//
LOCUS       DASEAA010000408          480 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.415, whole genome shotgun sequence.
ACCESSION   DASEAA010000408 DASEAA010000000
VERSION     DASEAA010000408.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 480)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.415"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
BASE COUNT          154 a           79 c           78 g          169 t
ORIGIN      
        1 atgatcacat ctatatattg atcattatag ttagctttat tgttcgttgt tttgtagaaa
       61 ctcgcgataa aaaatatttt tagtacataa ccatagcatt tacccttttt ccaaaagagt
      121 ttcaatgcta tacaaaaaga gtaagcaagt ttatggtggt ggctagctct ttcaacaaga
      181 aagggtgatg ctatgaatat ttttgttagg attgcctgga aaggataacc catgactgtt
      241 tatgaagcac tgtcttttgc aaccctggtg ttgctattga acagtcaaaa taacaaaaaa
      301 taaccactca taaactttgg tcggtttagt ggttattttt ataatctatt aagctagctg
      361 ccaccttaaa tgggcttata cttgagagtc atcttagcgc atgactctct tttcatattt
      421 aataataaca taagaccatt tgacaacata tgacattagg tactactcat tactatatct
//
LOCUS       DASEAA010000409          479 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.416, whole genome shotgun sequence.
ACCESSION   DASEAA010000409 DASEAA010000000
VERSION     DASEAA010000409.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 479)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.416"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>479
                     /locus_tag="U0342_003159"
     CDS             <1..>479
                     /locus_tag="U0342_003159"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003734747.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424469.1"
                     /translation="QSYAHIDLPVTSKQIVKQTFNVDSPFNSIQIAVLKEPDEASKYR
                     LKVVDKTNKKDIYDEVIAGSDFVEATNYQINVNEKPKGKTEYVIEVYQVENKNPEKPL
                     VLGTYTPDAVDLYPYGALYVNGVKKEKQDMGFTVSHVASEPIIPKYVSAIFDLGVII"
BASE COUNT          175 a           70 c           89 g          145 t
ORIGIN      
        1 acaaagttat gcgcatatag atcttcctgt tactagcaaa caaattgtta agcaaacgtt
       61 taatgtagat tcgccgttca attctatcca aatagcggtt ctaaaagagc cagatgaagc
      121 tagtaaatat cgtttgaaag ttgtagataa gacaaataag aaggatattt acgatgaagt
      181 tatagctgga tcagattttg tagaagctac aaattaccaa attaatgtaa atgaaaagcc
      241 aaaaggtaaa actgaatatg ttattgaagt ctatcaagtg gaaaataaaa accctgaaaa
      301 accattagtt ttaggtacct atactccaga tgcagtagat ctttatccgt atggagcact
      361 gtatgttaat ggtgttaaaa aagagaagca agatatgggc ttcactgtct cacatgttgc
      421 ttctgaacca ataataccga aatatgtctc cgctattttt gatttgggtg ttataatta
//
LOCUS       DASEAA010000410          478 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.417, whole genome shotgun sequence.
ACCESSION   DASEAA010000410 DASEAA010000000
VERSION     DASEAA010000410.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 478)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.417"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
BASE COUNT          150 a           92 c           73 g          163 t
ORIGIN      
        1 attttggaaa gttaatatta atttttggtc ttatatcagc aactttaagg ccggagttgc
       61 caccctatga aagattgcat gtgttaaaac acatgccttt caacgcttcc gtttctggct
      121 tgttttacat gtttttcgga taacctgaaa acttttcatc aagtgaatta ggagaacctt
      181 ccatggacaa acccttattt ccacttcaac aaaaagaaaa aaacgagaca tggacacgtc
      241 ttttttattt tgaaagacct gttatatcac aacgtcaatg cgtcttatgc gcttccaata
      301 taggaagtag tgagtgcgta taaccacacc ctcaccgcac gatacagtat aaagtgatct
      361 tacttctttc agacaaaaaa gaatttaaat cacttatttt tcaatgagcg tatttttatc
      421 tttgcttctt tttctcatag attatttaag taaagcctta aaaaaatcta ttctggcg
//
LOCUS       DASEAA010000411          470 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.419, whole genome shotgun sequence.
ACCESSION   DASEAA010000411 DASEAA010000000
VERSION     DASEAA010000411.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 470)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.419"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            27..>470
                     /locus_tag="U0342_003160"
     CDS             27..>470
                     /locus_tag="U0342_003160"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463835.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF3578 domain-containing protein"
                     /protein_id="HEM2424470.1"
                     /translation="MNLVALLKYMQENYGEQRTNYPMAGNEVAKKFKQGVKTAFETTL
                     LGEDYEISASIGTGGWANVPWIAVHDKEISTSVQEGVNLVYLFTNDYQGVYLSLNQGY
                     TYVNKKYKNTKLTLGKIARFWQGNLSTLTSENGFTIDPINLGREES"
BASE COUNT          174 a           65 c           94 g          137 t
ORIGIN      
        1 tacattatat aaaaaggatg tttgtgatga acttagtggc attattaaaa tacatgcaag
       61 aaaactatgg ggagcaaaga accaattatc caatggctgg gaatgaagtc gcaaaaaaat
      121 ttaagcaagg tgttaaaaca gcctttgaaa ccaccttatt aggagaagat tacgaaatat
      181 ctgcatccat tggtacaggc ggttgggcaa atgtcccttg gatagctgtg catgataaag
      241 aaattagcac aagtgtacaa gagggagtta atctagttta tttgtttaca aacgattacc
      301 aaggtgttta tttatcttta aatcaaggat atacatatgt aaataaaaaa tataaaaata
      361 ctaaattgac tttagggaaa attgctcgtt tttggcaggg aaatttatct acgttaacat
      421 ctgaaaatgg ttttacaatt gacccaatta acctcggccg ggaggaatct
//
LOCUS       DASEAA010000412          445 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.421, whole genome shotgun sequence.
ACCESSION   DASEAA010000412 DASEAA010000000
VERSION     DASEAA010000412.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 445)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.421"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..180
                     /locus_tag="U0342_003161"
     CDS             <1..180
                     /locus_tag="U0342_003161"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003731481.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="MBL fold metallo-hydrolase"
                     /protein_id="HEM2424471.1"
                     /translation="KRVLQSHFSLENVKEFLNANDLSQLREIHLLHISSSNGDPNMFK
                     NEIQALTGVPVYVLE"
     gene            186..>445
                     /locus_tag="U0342_003162"
     CDS             186..>445
                     /locus_tag="U0342_003162"
                     /inference="COORDINATES: protein motif:HMM:NF025107.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix domain-containing protein"
                     /protein_id="HEM2424472.1"
                     /translation="MENEIRVKGIFEQGYGIIAKALMRDKDLSIEAKSIYSYLASFAG
                     AGNTAFPSVELIIAELNISRDRFYKHRKQLVEKGFITVIQKKG"
BASE COUNT          164 a           62 c           90 g          129 t
ORIGIN      
        1 aagcgtgttt tacaatcgca tttcagctta gaaaatgtaa aagagttttt gaacgcaaat
       61 gacttatcgc aactaagaga aattcacttg ctacacattt cttctagcaa cggagatccc
      121 aatatgttta aaaatgaaat tcaagcatta actggtgtgc cagtttatgt actggagtga
      181 aaaaaatgga aaacgaaatt cgtgtgaaag gaatatttga acaaggatac ggaataatag
      241 caaaagcttt gatgcgagat aaagacttga gtattgaagc taagagcatt tattcctatc
      301 ttgcaagttt tgcgggtgca ggaaatacgg catttccttc tgtcgaactt attattgcag
      361 aattaaatat tagtagagat agattttata agcaccggaa acaactagtt gagaaaggat
      421 ttatcactgt aattcaaaaa aaggg
//
LOCUS       DASEAA010000413          441 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.423, whole genome shotgun sequence.
ACCESSION   DASEAA010000413 DASEAA010000000
VERSION     DASEAA010000413.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 441)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.423"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(19..92)
                     /locus_tag="U0342_003163"
     tRNA            complement(19..92)
                     /locus_tag="U0342_003163"
                     /product="tRNA-Met"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(56..58),aa:Met,seq:cat)
     gene            complement(114..189)
                     /locus_tag="U0342_003164"
     tRNA            complement(114..189)
                     /locus_tag="U0342_003164"
                     /product="tRNA-Val"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(154..156),aa:Val,seq:tac)
     gene            complement(247..318)
                     /locus_tag="U0342_003165"
     tRNA            complement(247..318)
                     /locus_tag="U0342_003165"
                     /product="tRNA-Glu"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(283..285),aa:Glu,seq:ttc)
     gene            complement(352..440)
                     /locus_tag="U0342_003166"
     tRNA            complement(352..440)
                     /locus_tag="U0342_003166"
                     /product="tRNA-Ser"
                     /inference="COORDINATES: profile:tRNAscan-SE:2.0.7"
                     /note="Derived by automated computational analysis using
                     gene prediction method: tRNAscan-SE."
                     /anticodon=(pos:complement(404..406),aa:Ser,seq:gga)
BASE COUNT          123 a          116 c           98 g          104 t
ORIGIN      
        1 caccacggaa ccactctatt gcgggggcag gatttgaacc tacgaccttc gggttatgag
       61 cccgacgagc taccagactg ctccaccccg cgacaataat attataaaat taatggtgga
      121 ggttaacggg atcgaaccgc tgaccctctg cttgtaaggc agatgctctc ccagctgagc
      181 taaacctcca taattactat tttactctaa aaacatgaaa atgtctctag taagtttaat
      241 aataaatgac ccgtacggga ttcgaacccg tgttaccgcc gtgaaagggc ggtgtcttaa
      301 ccgcttgacc aacgggccta agtgaaaata tgatgcatta ttatgtgtaa acggagagca
      361 agggattcga acccttgaga cagcttacac cgcctacacg gtttccaacc gtgctccttc
      421 ggccactcgg acagctctcc a
//
LOCUS       DASEAA010000414          416 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.424, whole genome shotgun sequence.
ACCESSION   DASEAA010000414 DASEAA010000000
VERSION     DASEAA010000414.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 416)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.424"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..>416)
                     /locus_tag="U0342_003167"
     CDS             complement(<1..>416)
                     /locus_tag="U0342_003167"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_012681220.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="teichoic acid biosynthesis protein"
                     /protein_id="HEM2424473.1"
                     /translation="KNEFLSGPINRADATWDFFLRSANMPDLPILAPNTIDFSSSGFF
                     NVANNEFMAQLTRNDSNNLACLTAVAPKIKQDITKIAVMGTCFSRNAFNSSPFFNPDY
                     KAFFECSFTQFHSSIISIMTEPANLINLDKYTDIKK"
BASE COUNT          141 a           60 c           77 g          138 t
ORIGIN      
        1 ttttttaata tcagtatact tatctagatt aattaagtta gcgggttcgg tcattatact
       61 aattatagaa gaatgaaact gcgtaaaact gcattcaaaa aaagctttat aatctggatt
      121 aaagaatgga gatgagttaa aagcatttcg gctaaaacaa gttcccatta cagctatttt
      181 tgttatatct tgtttgattt taggagcaac ggctgtaaga caagctaaat tattggagtc
      241 gtttcttgtt aattgcgcca taaattcgtt attagcaaca ttgaaaaatc ccgaagaact
      301 aaagtcaata gtatttggcg ctaaaatagg taaatctggc atgtttgccg aacgaaggaa
      361 gaaatcccat gtcgcatcag ctctattgat tggtccggat aagaattcat ttttat
//
LOCUS       DASEAA010000415          410 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.425, whole genome shotgun sequence.
ACCESSION   DASEAA010000415 DASEAA010000000
VERSION     DASEAA010000415.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 410)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.425"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            109..294
                     /locus_tag="U0342_003168"
     CDS             109..294
                     /locus_tag="U0342_003168"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724379.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424474.1"
                     /translation="MKKVKMEKWLIGVYALVVLMCIIIYFATESIILLLLGFIALLGT
                     GFQTLRYRNAKKSIKAK"
BASE COUNT          138 a           52 c           73 g          147 t
ORIGIN      
        1 tgattattct atttataaaa aatctaacta tactggactg cttaagacat ttacacataa
       61 atatcgtccg tacggttgaa aattgatata gtattggagg cttaggttat gaaaaaagtg
      121 aaaatggaaa agtggctcat tggtgtatat gcccttgtag tattaatgtg tattattatt
      181 tactttgcaa cagaaagtat aatcttattg ttactagggt tcatagctct tcttggaaca
      241 ggattccaaa ctttaagata ccgaaatgca aagaaatcaa tcaaagctaa ataaacaaaa
      301 tgtaggttgg gataaaatta tcctgcctac tttttattta tgtgtagaat tcttttaatc
      361 attcccactt ggttttgagt gcgtttgttc gtaagatgtt attaagagat
//
LOCUS       DASEAA010000416          408 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.427, whole genome shotgun sequence.
ACCESSION   DASEAA010000416 DASEAA010000000
VERSION     DASEAA010000416.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 408)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.427"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            13..>408
                     /locus_tag="U0342_003169"
     CDS             13..>408
                     /locus_tag="U0342_003169"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003771339.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ATP-binding cassette domain-containing protein"
                     /protein_id="HEM2424475.1"
                     /translation="MNNILETKNLKVTINNKVILYLDKEVCISEKDKVAILGDNGAGK
                     TTLVNSILGEKNSSGEITKKFKKNDCGVVFQENAYNDLMKVYELITLVLPHLKKKERA
                     QFLHKYELESLRKKYIKDLSGGEKQRLTLC"
BASE COUNT          170 a           43 c           77 g          118 t
ORIGIN      
        1 gtgcatgtgc atatgaataa tattttggaa acgaaaaatt tgaaagttac aataaataat
       61 aaagtaattc tatatttaga taaagaagtt tgtatttcag aaaaagacaa agttgccatt
      121 ctaggagaca atggagctgg gaaaaccacg ttagtaaata gtattcttgg tgaaaagaac
      181 tcttctggag aaattaccaa aaagtttaaa aaaaatgact gtggtgtagt gtttcaagaa
      241 aatgcatata atgatttgat gaaagtttat gaattgatta ctttagttct gccacatcta
      301 aagaaaaaag agagagcgca gtttttacac aaatatgaac ttgaaagttt gagaaaaaag
      361 tacattaaag acttatctgg tggagaaaaa caacgactaa cactatgt
//
LOCUS       DASEAA010000417          403 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.428, whole genome shotgun sequence.
ACCESSION   DASEAA010000417 DASEAA010000000
VERSION     DASEAA010000417.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.428"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
BASE COUNT          179 a           53 c           74 g           97 t
ORIGIN      
        1 atatagaagc ttggctgatg agagctttag agttaggagt taatgtcatt atactgggca
       61 tctagtgaat aaatatcatt aaaaagaaga ctcagcctac gtttttgctt taccataaaa
      121 caatcagtaa tgaaaaatca caaagataaa cccatagccc ctcctcgaat cagggggagg
      181 ggcgttttaa aaatgtaagt gacgcaaaag caaatataca tataaaagaa taaatcggcg
      241 ggagcatatg caagatagta agaatataac cctagaaaat attaaaaagt aaaaagtaat
      301 gcaaaaaaag tccagaaata cccttttaaa aataaaaaga agaaaataac caaattagga
      361 gattgaaatg gattcaattt tgaaactaat aatggatatg gaa
//
LOCUS       DASEAA010000418          403 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.429, whole genome shotgun sequence.
ACCESSION   DASEAA010000418 DASEAA010000000
VERSION     DASEAA010000418.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 403)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 403)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..403
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.429"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(9..>403)
                     /locus_tag="U0342_003170"
     CDS             complement(9..>403)
                     /locus_tag="U0342_003170"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466300.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424476.1"
                     /translation="AKKNNPVRQMALLEVALGISTYRGSRKKTFIFIGSFFVIAFILG
                     YLTYFFGINRNITATIIVGIILTLFLIAGTIIMFVIAIRQASSLRTDAWAKILTTIDP
                     QFPVEFLNEKKWQKAFLAQMESMNEQLA"
BASE COUNT          132 a           71 c           67 g          133 t
ORIGIN      
        1 ttctctgatt atgctaattg ttcgttcata ctttccattt gagcaaggaa ggctttttgc
       61 catttcttct catttaggaa ttcaacggga aactgagggt caattgtggt taagatttta
      121 gcccatgcgt ctgtacgtaa tgaagatgct tggcgaatcg ctattacaaa cattattatt
      181 gttccggcaa ttaaaaataa agttaaaata atacctacaa tgattgtagc tgtgatattt
      241 cggtttattc caaaaaagta cgttagataa cctaaaataa atgcgattac aaaaaaacta
      301 ccaataaaaa taaaggtttt cttacggcta cctctataag tagaaatacc tagcgctact
      361 tccagcaatg ccatttgacg aaccggatta ttcttctttg caa
//
LOCUS       DASEAA010000419          400 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.432, whole genome shotgun sequence.
ACCESSION   DASEAA010000419 DASEAA010000000
VERSION     DASEAA010000419.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 400)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.432"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
BASE COUNT          126 a           58 c           74 g          142 t
ORIGIN      
        1 gagtatgtag aaaccacgta tcagcacata aaactgataa gagaaataga gaacttttga
       61 gtttatgtaa tattggttgt gaccattatt ttccgcgaca tatttgtgat ctagatattt
      121 gctataaata aaatgcttga aatgcttgct aacttgtttg atttttgtta ttcttgatta
      181 agaagttaga taataattct ttgagtgtcg cataaatgat tagtcaaggc tagtcataac
      241 ttgtaagctg cctgttgagg tagtcgcctt aaagttgtca acttctattt tttatatatg
      301 tcagtcccta acctcgccgt tagggctttt tttatgcaaa aaaataccct gaacaaagag
      361 ttcaaggttg cagtcatata aaaccgctaa tagttgaatg
//
LOCUS       DASEAA010000420          396 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.433, whole genome shotgun sequence.
ACCESSION   DASEAA010000420 DASEAA010000000
VERSION     DASEAA010000420.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 396)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.433"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            20..>396
                     /locus_tag="U0342_003171"
     rRNA            20..>396
                     /locus_tag="U0342_003171"
                     /product="23S ribosomal RNA"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF02541"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: cmsearch."
                     /db_xref="RFAM:RF02541"
BASE COUNT          128 a           74 c          115 g           79 t
ORIGIN      
        1 tacttcgtag aagtaaattg gttaagttag aaagggcgca cggtggatgc cttggcacta
       61 ggagccgaag aaggacggga ctaacaccga tatgctttgg ggagctgtac gtaagcgttg
      121 atccagagat ttccgaatgg gggaacccac tatctttagt cggatagtat ccttacgtga
      181 atacatagcg tgaggaaggc agacccaggg aactgaaaca tctaagtacc tggaggaaga
      241 gaaagaaaaa tcgatttcct gagtagcggc gagcgaaacg gaaagagccc aaaccaagaa
      301 gcttgcttct tggggttgta ggacactcta tacggagtta caaaagaaag ttataaatga
      361 agcggtctgg aaaggcccgc caaagacggt aacagc
//
LOCUS       DASEAA010000421          376 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.434, whole genome shotgun sequence.
ACCESSION   DASEAA010000421 DASEAA010000000
VERSION     DASEAA010000421.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.434"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..199)
                     /locus_tag="U0342_003172"
     CDS             complement(<1..199)
                     /locus_tag="U0342_003172"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003727741.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="helix-turn-helix transcriptional regulator"
                     /protein_id="HEM2424477.1"
                     /translation="MTIGKKISELRNKRGISQIQLAKDLNVSTSTIGMWETDKRAIKD
                     ELIVQLADYFNVTTDYLLGREK"
BASE COUNT          135 a           60 c           46 g          135 t
ORIGIN      
        1 atttttcacg acctaataaa taatcagttg ttacattaaa gtaatcggct aactgaacga
       61 ttaattcatc ttttatagca cgtttgtctg tttcccacat tcctatagta cttgttgaaa
      121 catttaaatc ttttgcaagt tgaatttgag agatacctct tttatttctc aactcagata
      181 tttttttgcc tatagtcata atatctccct ccttcttaag tatcactata agtgatattt
      241 taaaaaaaat aaacaaaaat cacaaaaagt gattgacaat cacgtaaagt gatagtatta
      301 ttatcacata gagtgataaa ggcggtgatt aatattaata atctcaaaaa aattcgcatt
      361 gctaaaggta ttacac
//
LOCUS       DASEAA010000422          376 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.435, whole genome shotgun sequence.
ACCESSION   DASEAA010000422 DASEAA010000000
VERSION     DASEAA010000422.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 376)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.435"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..273)
                     /locus_tag="U0342_003173"
     CDS             complement(<1..273)
                     /locus_tag="U0342_003173"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464905.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424478.1"
                     /translation="MISILQILLEPEFISLTVTFLLMLTIFSYWSAITLLKPKMVLPA
                     DAICLKLVKISLRAQIYITTPNFVINWLAITRKCSAITDDEDSFSFS"
BASE COUNT          135 a           60 c           66 g          115 t
ORIGIN      
        1 ggaaaatgaa aaactgtctt catcatcagt aatggcgcta catttcctgg ttatagccag
       61 ccaattaata acaaaattag gcgtagttat ataaatttga gctcgaagtg aaatttttac
      121 tagctttaag cagatagcgt cagcgggtag caccattttc ggttttaata atgtaatggc
      181 tgaccaataa ctgaaaatcg tcaacattaa taaaaacgtt actgtgagtg aaatgaattc
      241 tggttcaagt aaaatttgta aaatggaaat catgccacgc agtcgctcct ttcaaggttt
      301 tagtactcat taactataat gcaaaaagag ctatagcaca actactattt ttggaatttt
      361 agtaaacgat atcaaa
//
LOCUS       DASEAA010000423          368 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.438, whole genome shotgun sequence.
ACCESSION   DASEAA010000423 DASEAA010000000
VERSION     DASEAA010000423.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 368)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.438"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>368
                     /locus_tag="U0342_003174"
     CDS             <1..>368
                     /locus_tag="U0342_003174"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_466297.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="bacteriocin immunity protein"
                     /protein_id="HEM2424479.1"
                     /translation="SNNFQRSETNTFFYETYLKKDSEINSPEGNSVEIDFNYLKLNPI
                     KSIKGQNVEKEAIISDKVLNIIVPNSKKGLEKDIKNTFLDYFYFQKVEVANIYNKALD
                     LPAVALSKEDLSVNIIYAEN"
BASE COUNT          146 a           43 c           65 g          114 t
ORIGIN      
        1 ttcgaataat tttcagcgaa gtgaaactaa tacttttttc tatgaaactt atttgaaaaa
       61 ggactctgaa ataaactcac ctgagggtaa tagcgtagaa attgatttta attacttaaa
      121 attaaatccg attaaaagta taaaaggtca gaacgtggaa aaagaagcga taatcagtga
      181 taaagttttg aatattattg ttcctaatag taagaaggga ctagagaaag atataaaaaa
      241 cacttttctc gattacttct attttcaaaa agtagaagtg gcgaatattt ataacaaagc
      301 tttagacctg cctgctgtgg cgctaagtaa ggaagactta agtgttaata ttatttatgc
      361 agaaaata
//
LOCUS       DASEAA010000424          367 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.439, whole genome shotgun sequence.
ACCESSION   DASEAA010000424 DASEAA010000000
VERSION     DASEAA010000424.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 367)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.439"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            31..>367
                     /locus_tag="U0342_003175"
     CDS             31..>367
                     /locus_tag="U0342_003175"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003744581.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424480.1"
                     /translation="MASGIDAATFELVYEPAYKLIWMQPIIIVGYLGFLCTIFIPKFQ
                     RGKNRIVPSIGILILVIGLLNLAVRPLFGFDSFTFSIIATYVSELVEPAFLIAVSASI
                     LSLIMYAIYL"
BASE COUNT          104 a           49 c           70 g          144 t
ORIGIN      
        1 atagcagtaa tttgtttgtt gttcccgtgg atggctagcg ggatagatgc agcaacattt
       61 gaattagtat atgagcctgc ttataaatta atttggatgc aaccaatcat cattgtggga
      121 tatttgggat ttttgtgtac tatatttatt ccaaaatttc agcgaggtaa aaatagaatt
      181 gtaccatcta taggaatttt aatattggtt ataggtttac ttaatttggc agttcggcca
      241 ttatttggat ttgattcatt cacctttagt attatagcta cttatgtctc tgaattagta
      301 gaaccagcat ttctcatcgc ggtgtcagca agtattttat ctttaattat gtatgcgata
      361 tatttaa
//
LOCUS       DASEAA010000425          366 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.440, whole genome shotgun sequence.
ACCESSION   DASEAA010000425 DASEAA010000000
VERSION     DASEAA010000425.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 366)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.440"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>366
                     /locus_tag="U0342_003176"
     CDS             <1..>366
                     /locus_tag="U0342_003176"
                     /inference="COORDINATES: protein motif:HMM:NF016119.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="sortase"
                     /protein_id="HEM2424481.1"
                     /translation="QEMKQVSQQTAKNISVAYNKDRIKNVIKTDNKTRSDVERLSWKD
                     FISFQGSKEEMNIASNSVGIIEIPSIALSLPIIEGTNNSNLKVGATTFREYQSLTDGN
                     YVLLGHNMGQSGVLFSDVP"
BASE COUNT          136 a           50 c           71 g          109 t
ORIGIN      
        1 tcaggaaatg aaacaagtaa gtcaacaaac agccaaaaat atttcagttg cttacaataa
       61 agataggata aaaaacgtta tcaaaacgga taataagacc agaagtgatg tggaaagact
      121 gtcttggaag gactttattt catttcaagg aagtaaagag gaaatgaata tagcttctaa
      181 tagtgttgga attattgaaa tcccaagtat tgctctttct ttaccaatta ttgaaggaac
      241 aaataattct aatttgaaag taggggctac tacttttcgg gaatatcagt ctttaacaga
      301 tgggaactat gtgctacttg gtcataacat gggacaatct ggagtacttt tttcagatgt
      361 tcctaa
//
LOCUS       DASEAA010000426          356 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.444, whole genome shotgun sequence.
ACCESSION   DASEAA010000426 DASEAA010000000
VERSION     DASEAA010000426.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 356)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.444"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>356
                     /locus_tag="U0342_003177"
     CDS             <1..>356
                     /locus_tag="U0342_003177"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_463839.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="HNH endonuclease"
                     /protein_id="HEM2424482.1"
                     /translation="NNFSSFKTTNKLRLRYILKKINDSYSKEIAVLNDNNKIHLEHIM
                     PIKADGWDIIKEEHEEYLWKIGNLTLLGSEYNKKSTNKIFNDKKDIYEYSEVQLTRKL
                     LDYDEWNIDVIKERQV"
BASE COUNT          158 a           34 c           60 g          104 t
ORIGIN      
        1 gaataacttt tctagcttta aaactacaaa taaacttaga ttaagataca tattaaaaaa
       61 aattaatgac agttactcta aagaaattgc tgttttaaac gataataata aaatccacct
      121 tgaacacata atgcctataa aagcagatgg atgggatatc attaaagaag aacatgaaga
      181 atatttgtgg aagattggaa atcttactct attgggaagc gaatataata aaaaatcgac
      241 caataaaata tttaatgata agaaagatat ttatgaatat tcggaagttc agttgacaag
      301 gaagttgtta gattatgatg aatggaatat agatgtaatt aaagaaaggc aagttg
//
LOCUS       DASEAA010000427          347 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.446, whole genome shotgun sequence.
ACCESSION   DASEAA010000427 DASEAA010000000
VERSION     DASEAA010000427.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 347)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.446"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..116)
                     /locus_tag="U0342_003178"
     CDS             complement(<1..116)
                     /locus_tag="U0342_003178"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464123.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="PLP-dependent transferase"
                     /protein_id="HEM2424483.1"
                     /translation="MSNEYKFETIQVHGGHTPDGDTHSRAVPIYQTTSYTFD"
     regulatory      complement(225..325)
                     /regulatory_class="riboswitch"
                     /inference="COORDINATES: nucleotide
                     motif:Rfam:12.0:RF00162"
                     /inference="COORDINATES: profile:INFERNAL:1.1.1"
                     /note="SAM riboswitch class I; Derived by automated
                     computational analysis using gene prediction method:
                     cmsearch."
                     /bound_moiety="S-adenosylmethionine"
                     /db_xref="RFAM:RF00162"
BASE COUNT          102 a           72 c           61 g          112 t
ORIGIN      
        1 ctatcaaatg tgtatgacgt cgtttgataa attggtacgg ctctagaatg cgtatctccg
       61 tccggggtgt gtccgccgtg tacttgaatt gtttcgaatt tatactcatt actcataaaa
      121 tccactcctc tttaatatgt atttatcagt aatttccatc aaaaaacctc cctagcagta
      181 tataagccgc cagagaggat agagtttcct aaacttggat ttccgactta tctttcagaa
      241 tatactgctg gaattagcac cgtgaaaata aattccggtt gctaaggctt caaagggcca
      301 gtccctccac ctttcgtgat aagaaaatac tattaaatta agttata
//
LOCUS       DASEAA010000428          345 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.447, whole genome shotgun sequence.
ACCESSION   DASEAA010000428 DASEAA010000000
VERSION     DASEAA010000428.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 345)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.447"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>345
                     /locus_tag="U0342_003179"
     CDS             <1..>345
                     /locus_tag="U0342_003179"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724643.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="serine protease"
                     /protein_id="HEM2424484.1"
                     /translation="NKNKQSIEEETHYLYEEDARKAFRKWDNIKHISEKFSPRSQGKK
                     VYENRLWGMSIKTKERLNASDGEGIRFGVVVTLKEINGVNRIDDFIQQCSLRGWLVNR
                     INVENRIDIYQTA"
BASE COUNT          141 a           33 c           77 g           94 t
ORIGIN      
        1 aataaaaaca aacaaagtat agaagaagaa acgcattatt tatatgaaga agatgcaagg
       61 aaagcttttc gaaaatggga taatatcaaa catattagtg aaaaattcag ccctagatca
      121 caagggaaaa aagtctatga aaatagatta tggggtatga gtatcaaaac taaggaacgg
      181 ttaaatgcca gtgatggaga agggatacgc tttggtgtag ttgttacatt gaaggaaatt
      241 aatggtgtta atagaattga tgattttatt caacagtgta gcctgcgtgg atggctagtg
      301 aatagaatta atgttgaaaa tagaattgat atatatcaaa ctgct
//
LOCUS       DASEAA010000429          343 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.448, whole genome shotgun sequence.
ACCESSION   DASEAA010000429 DASEAA010000000
VERSION     DASEAA010000429.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 343)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.448"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            90..284
                     /locus_tag="U0342_003180"
     CDS             90..284
                     /locus_tag="U0342_003180"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003723550.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424485.1"
                     /translation="MKISKPAYLVLLVVGLVFVFLGLSNIGISIFWDFSDLENLMVGS
                     LLIIIGLITLRIRYSFKKRG"
BASE COUNT          102 a           45 c           62 g          134 t
ORIGIN      
        1 caaaacaaat aacaagtgag tgatgtcgtt tctctcaact tatgttacaa taatgtggaa
       61 attattttta atgtaaatga ggcgtcctta tgaaaatttc taaaccggct tatttggttt
      121 tacttgttgt tggcttggtt tttgtttttc taggactatc taatatcgga atctctattt
      181 tttgggattt tagcgactta gagaatttga tggttggtag tttattaatc atcatcgggc
      241 tcatcacact taggattcga tattcattta aaaaaagagg atagaaaagc actgcaaata
      301 ttgattgcag tgcttttcta ctgttaaaaa ataacgtttt ctt
//
LOCUS       DASEAA010000430          340 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.450, whole genome shotgun sequence.
ACCESSION   DASEAA010000430 DASEAA010000000
VERSION     DASEAA010000430.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 340)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.450"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            10..>340
                     /locus_tag="U0342_003181"
     CDS             10..>340
                     /locus_tag="U0342_003181"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464773.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="8-oxo-dGTP diphosphatase"
                     /protein_id="HEM2424486.1"
                     /translation="MYKYTLCFIQRADEILLLNRQKSPWMGSWNGVGGKIEQGETLLE
                     SVQREITEETGISSNDYEIRDIGEMKWFVDGENLGGMHLFLANLPDNYVYPTPRATDE
                     GILDFKKR"
BASE COUNT          116 a           52 c           79 g           93 t
ORIGIN      
        1 ggtggaaata tgtataaata taccctttgt tttatccaaa gagccgatga aattctattg
       61 ttaaatagac aaaaatcccc atggatggga agttggaatg gtgttggtgg caaaattgag
      121 caaggggaaa cacttcttga atcggtccaa cgggaaatca cagaagagac cggaatttcc
      181 tcaaatgact acgaaattcg tgatatcggt gaaatgaaat ggtttgtgga tggcgaaaat
      241 ctgggaggta tgcatttatt tctggccaat cttccggata attatgtata tccaacacct
      301 cgtgcaaccg atgaaggaat acttgatttt aaaaaaagaa
//
LOCUS       DASEAA010000431          320 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.453, whole genome shotgun sequence.
ACCESSION   DASEAA010000431 DASEAA010000000
VERSION     DASEAA010000431.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 320)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.453"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            complement(<1..279)
                     /locus_tag="U0342_003182"
     CDS             complement(<1..279)
                     /locus_tag="U0342_003182"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_003724240.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="DUF262 domain-containing protein"
                     /protein_id="HEM2424487.1"
                     /translation="MDLSQIINGETESHFFGQIVIHVDKKEKAKLIIDGQQRTSTAVI
                     FLAAMRELFTEMYNAGWDDAQFDAQDITTKFIGRYTQTRDERKLILGEN"
BASE COUNT           82 a           76 c           38 g          124 t
ORIGIN      
        1 attttcacca agtattaatt tcctctcatc cctagtttgt gtatacctac cgataaattt
       61 cgtagtaatg tcctgcgcat caaattgtgc atcatcccag cctgcattat acatctctgt
      121 gaacaactct ctcatcgcag ctaaaaagat gactgctgta ctcgttcttt gctgaccatc
      181 gattattagt ttcgcttttt cttttttatc tacatgtatt acaatttgtc caaaaaaatg
      241 actttcagtt tcaccattta tgatttgact taagtccatc cataagtctt ctaactctgt
      301 ttcttcccat gaatattctc
//
LOCUS       DASEAA010000432          314 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.denovo.454, whole genome shotgun sequence.
ACCESSION   DASEAA010000432 DASEAA010000000
VERSION     DASEAA010000432.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 314)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.denovo.454"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..>314
                     /locus_tag="U0342_003183"
     CDS             <1..>314
                     /locus_tag="U0342_003183"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465003.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=3
                     /transl_table=11
                     /product="MerR family transcriptional regulator"
                     /protein_id="HEM2424488.1"
                     /translation="IYTLRYYDKQGLLPFVSKNQSGYREFTESDLNLIHTICCLKNTG
                     MPLKQIRTYIDYCMEGPVSIEARKQLLLDHRAAVLKSLEDLTENLKEVDVKIAKYSSP
                     DA"
BASE COUNT          100 a           55 c           62 g           97 t
ORIGIN      
        1 cgatttatac attgcgttac tatgataagc aaggtttatt gccgtttgtt tctaaaaacc
       61 aatccggcta ccgtgagttt acggaatcag acttaaattt aattcatacg atttgttgct
      121 tgaaaaatac aggaatgcca ctaaagcaaa tccgcacata tattgattat tgtatggaag
      181 gccccgtttc tattgaagcg cgtaaacagt tgctcttgga tcatcgggcc gccgttttaa
      241 aaagtttaga agatttaaca gaaaatctaa aagaagtcga tgttaaaata gcgaagtatt
      301 cgtctcctga tgcg
//
LOCUS       DASEAA010000433         4142 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.guided.208, whole genome shotgun sequence.
ACCESSION   DASEAA010000433 DASEAA010000000
VERSION     DASEAA010000433.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 4142)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 4142)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..4142
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.guided.208"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            <1..267
                     /locus_tag="U0342_003184"
     CDS             <1..267
                     /locus_tag="U0342_003184"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465231.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="YihY family inner membrane protein"
                     /protein_id="HEM2424489.1"
                     /translation="WVAPNRRSTLISVLPGALFSTIGWTVASLGFAYYVNNFGNYSAT
                     YGSIGVIIILMLWFYLTGIILMIGGELNATLAIRKKKKELGEIN"
     gene            complement(297..941)
                     /locus_tag="U0342_003185"
     CDS             complement(297..941)
                     /locus_tag="U0342_003185"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465230.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="deoxynucleoside kinase"
                     /protein_id="HEM2424490.1"
                     /translation="MEGVGNKVIVLAGMIGAGKSSYTELIANELGTKAFYESIKDNRI
                     LEMFYEDPKRWAFALQIYFLNTRFRSIKAALTDQNNVLDRSIYEDALFTQINFEEGNI
                     SEPEMDTYLDLLDNMMEELAYMPKKAPDLLIYLRGSLDTVLSRIALRGRPYEQTFDNP
                     GLLDYYKHLHSRYDSWFESYDKSETLVINIDEIDINQPNDADYVMQLIHEKLKR"
     gene            1048..1428
                     /locus_tag="U0342_003186"
     CDS             1048..1428
                     /locus_tag="U0342_003186"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465229.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="OsmC family protein"
                     /protein_id="HEM2424491.1"
                     /translation="MTKPLKLVYTENGFDTGSFLIDDKLTEYSPADLMLMSIASCSAI
                     VFRNILKKKRVNFTDLWVDATMERIPEEENRISAIHLHFKITGAALDPKALEKALKLT
                     PKYCSMVRSVEKSILVDESLEIMP"
     gene            1493..2872
                     /gene="rlmD"
                     /locus_tag="U0342_003187"
     CDS             1493..2872
                     /gene="rlmD"
                     /locus_tag="U0342_003187"
                     /EC_number="2.1.1.190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465228.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="23S rRNA (uracil(1939)-C(5))-methyltransferase
                     RlmD"
                     /protein_id="HEM2424492.1"
                     /translation="MNQNPVEEGQKFPLTIRRMGINGEGIGYFKKAVVFVPGAITGEE
                     VVVEAVKVRDRFTEAKLNKIRKKSPNRVTAPCPVYEACGGCQLQHVAYSAQLELKRDI
                     VIQSIEKHTKIDPTKLKIRPTIGMEDPWRYRNKSQFQTRMVGSGQVETGLFGANSHQL
                     VPIEDCIVQQPVTIKVTNFVRDLLEKYGVPIYDEKAGSGIVRTIVVRTGVKTGETQLV
                     FITNSKKLPKKREMLAEIEAALPEVTSIMQNVNQAKSSLIFGDETFLLAGKESIEEKL
                     MELEFDLSARAFFQLNPFQTERLYQEVEKALVLTGSETLVDAYCGVGTIGQAFAGKVK
                     EVRGMDIIPESIEDAKRNAEKNGIENVYYEVGKAEDVLPKWVNEGFRPDAVIVDPPRS
                     GCDQGLIKSLLDVEAKQLVYVSCNPSTLARDLALLAKKYRIRYMQPVDMFPQTAHVET
                     VVLLQLKDK"
     gene            2887..3288
                     /locus_tag="U0342_003188"
     CDS             2887..3288
                     /locus_tag="U0342_003188"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_010989789.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="fosfomycin resistance thiol transferase FosX"
                     /protein_id="HEM2424493.1"
                     /translation="MISGLSHITLIVKDLNKTTAFLQNIFNAEEIYSSGDKTFSLSKE
                     KFFLIAGLWICIMEGDSLQERTYNHIAFQIQSEEVDEYTERIKALGVEMKPERPRVQG
                     EGRSIYFYDFDNHLFELHAGTLEERLKRYHE"
     gene            3317..3670
                     /locus_tag="U0342_003189"
     CDS             3317..3670
                     /locus_tag="U0342_003189"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465226.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424494.1"
                     /translation="MKKLFDETNEFEAKYYRTIWYGYIDNEFAPELSDEIKQLIQSDL
                     TEKTANPIEATHWVFYSETQAGDAIGDKVRSSIMVRHRDNKFVVHYNVSDFQFVTVFD
                     VATAFKDQLEQALNA"
     gene            complement(3710..3916)
                     /locus_tag="U0342_003190"
     CDS             complement(3710..3916)
                     /locus_tag="U0342_003190"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465225.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="hypothetical protein"
                     /protein_id="HEM2424495.1"
                     /translation="MKLIGKHPSGRAIIIRLNNQEYHYETANSFGSATSLTRAKTEAR
                     ADSFTSSEMNQGLHIGNWHWKELG"
     gene            complement(3944..>4142)
                     /locus_tag="U0342_003191"
     CDS             complement(3944..>4142)
                     /locus_tag="U0342_003191"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_465224.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=2
                     /transl_table=11
                     /product="chemotaxis protein"
                     /protein_id="HEM2424496.1"
                     /translation="AIKEVEKSVNGITQEINTISSGTERVEAKVEESQEVLILSLEDF
                     SQIESASTALDQNAGAFTKMI"
BASE COUNT         1347 a          799 c          799 g         1197 t
ORIGIN      
        1 tgggtcgcac caaaccggcg cagtacgttg attagtgttc tacctggagc gcttttttca
       61 acaatcggtt ggacagttgc ttcgctaggt tttgcgtatt acgtaaataa tttcggcaac
      121 tattcagcca catatggcag tatcggtgta attattattt taatgttatg gttttatttg
      181 accggcatta ttttgatgat tggcggggag cttaacgcta cactggcgat tcggaaaaag
      241 aaaaaagaat taggcgaaat caattaaaaa aacgctaaaa cagcaaaaag cctgttttag
      301 cgttttaatt tttcatgaat aagttgcatg acataatctg cgtcatttgg ttgattaata
      361 tctatttcgt cgatattaat aacaagggtt tcactcttat cataagactc aaaccagctg
      421 tcataacgac tatgcagatg cttgtaatag tcaagtaaac ctggattatc aaaggtttgt
      481 tcataaggac gaccacggag agcaattcgg ctcaatacag tgtctaaact tcctcgcaaa
      541 taaatcaaca aatcaggcgc ttttttcggc atataagcaa gttcttccat catattgtcg
      601 agtaaatcaa ggtatgtatc catctcaggc tccgaaatgt taccttcttc aaaattaatt
      661 tgcgtaaaaa gcgcgtcctc gtatatgctc cgatcaagca cattattttg atccgttaac
      721 gcagctttaa tactacgaaa gcgggtattt aaaaaatata tttgtaaggc aaaagcccat
      781 ctttttgggt cttcataaaa catttcaagg atgcggttat ccttaatgct ttcataaaat
      841 gcctttgttc cgagttcatt tgcgattagc tctgtatagc tacttttccc agcaccaatc
      901 attcctgcta aaacaatcac tttatttcct actccttcca taacatgagt agcctccttt
      961 tttggtcgac tatctgttca ttatactact aatttgctta ataaggagat tttttgtacg
     1021 ataaaagaga agaaatgagg gataaccatg acaaaaccat taaagctagt ttataccgaa
     1081 aatgggtttg acacaggaag ttttttaatc gatgacaaac tgaccgaata ttcaccagcg
     1141 gatttgatgt taatgtctat tgccagttgt agcgccattg tttttcgtaa cattttaaag
     1201 aaaaaacgag taaactttac cgacttatgg gtagacgcca caatggaacg catcccagaa
     1261 gaagaaaatc gtataagcgc gatacatctt cattttaaaa taaccggtgc tgccttggat
     1321 ccaaaagcac ttgaaaaagc attaaaatta acaccgaaat actgttcgat ggttcgttct
     1381 gtcgaaaaaa gcatccttgt cgatgaaagt cttgaaatca tgccataaac tactgacaag
     1441 ctgctgtttt tttgttagta ttaatgaaga cttggaatga tggaggaaaa taatgaatca
     1501 aaatccagta gaagaaggac aaaaattccc gctaactatt cggcgcatgg gaatcaacgg
     1561 ggaaggaatc ggctacttta aaaaagcagt tgtatttgta cctggcgcaa ttaccggtga
     1621 agaagtagtt gtcgaagcgg tcaaagttcg tgatcgtttc accgaagcaa aattaaataa
     1681 aattcgtaaa aaatctccaa accgagttac cgcaccttgc ccagtttacg aggcgtgtgg
     1741 tggttgccag ttgcaacatg tggcctatag cgcccaactt gaactaaaaa gagatattgt
     1801 tattcaatca atcgaaaaac atacaaaaat cgatccaacc aaattaaaaa tccgcccaac
     1861 aatcggaatg gaagacccat ggcgttaccg taataaaagc caattccaaa caagaatggt
     1921 aggcagtggt caagtcgaaa cagggctttt cggtgccaat tctcaccaac ttgttccaat
     1981 tgaagattgt atcgtccaac aacccgttac catcaaagta acgaattttg ttcgcgactt
     2041 actagaaaaa tacggcgtgc caatttatga tgaaaaagct ggcagtggta tcgtccgaac
     2101 tatcgtcgtt cgtactggcg tgaaaaccgg cgaaacacag ctcgtcttca ttacaaatag
     2161 taaaaagtta cctaaaaaac gcgaaatgct tgcagaaatc gaagcagctc ttccggaagt
     2221 cacttcgatt atgcaaaacg tgaatcaagc aaaatcctca cttattttcg gtgacgaaac
     2281 gttcctttta gcaggaaaag aaagcattga agagaaatta atggaactag aattcgatct
     2341 atctgctcgt gcctttttcc aattaaaccc gttccaaaca gagcgacttt atcaagaagt
     2401 cgaaaaagca ctcgtactaa caggcagtga aacactagta gatgcttatt gcggtgttgg
     2461 aacaatcggc caagcttttg ccggaaaagt aaaagaagtt cgtggtatgg atattattcc
     2521 agaatccatt gaagacgcta aacgaaacgc cgagaagaat ggcatcgaaa atgtttatta
     2581 tgaagttggg aaagcagaag acgtattacc aaaatgggta aatgaaggtt tccgcccaga
     2641 cgcagtcatc gttgacccac caagaagcgg ctgtgaccaa ggcctaataa aatcattact
     2701 agatgtggaa gcaaaacaac ttgtttatgt atcctgtaat ccatccacat tagcacgtga
     2761 cttagcttta ctcgcgaaga aatatcgcat tcgctatatg caacccgtcg atatgttccc
     2821 gcaaacagct cacgtggaaa ccgtagtact cttgcagtta aaagataaat aaaggactgg
     2881 tggtacatga tttcaggatt aagccatatc actttaattg tgaaagattt gaataaaaca
     2941 actgctttct tacagaatat ttttaatgca gaagaaatct attctagtgg cgacaaaaca
     3001 ttttcgcttt ccaaagaaaa attttttcta atagctggtt tgtggatttg cattatggaa
     3061 ggagattctt tacaagagcg aacttacaat catattgctt tccaaattca atccgaggaa
     3121 gtggatgaat atactgagcg gattaaagct ctcggtgtgg aaatgaaacc agaacgtccc
     3181 agagtccaag gtgaaggacg ttccatttat ttttatgatt ttgataatca tctgtttgaa
     3241 ttacacgctg gtacattaga agaacgctta aaaaggtatc acgaatagaa ataacaccta
     3301 ataggaggaa acaaacatga aaaaactatt tgatgaaacg aatgaatttg aagcaaagta
     3361 ctaccgaact atttggtacg gctacatcga caatgaattc gcgccagaat taagtgatga
     3421 aataaaacaa ctcattcaaa gcgaccttac agaaaaaaca gcaaatccaa tcgaagcaac
     3481 tcactgggtt ttttatagcg aaacccaagc aggggacgca attggtgata aagtccgctc
     3541 ttccattatg gttcgccacc gggataataa gtttgtcgtc cattacaacg tgagcgattt
     3601 ccaatttgtt actgtatttg atgtggcaac cgcctttaaa gaccaattag aacaagcatt
     3661 gaatgcgtaa ataaaaaatc ccgtctattt ttatagacgg gattttcgtt catccaagtt
     3721 ctttccagtg ccaattacca atatgtaaac cttggttcat ttcactagat gtaaaactat
     3781 cggctctagc ttctgttttt gctcgtgtta atgaagtcgc acttccaaaa ctatttgcgg
     3841 tttcataatg gtattcttgg ttgttcaaac ggataataat ggcacgacca gaaggatgtt
     3901 ttccaataag tttcaaggtt tcttcgctcc ttttttcagt cggttaaatc atttttgtga
     3961 aagcaccggc attttgatcc aaggcagtag aggcagattc aatttggcta aagtcttcta
     4021 aagataaaat aagcacttct tggctttcct cgacttttgc ttcgacacgt tccgtaccac
     4081 ttgagatagt attaatttct tgcgtgatac cgttgacact tttttccact tctttaattg
     4141 ct
//
LOCUS       DASEAA010000434         1760 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.guided.288, whole genome shotgun sequence.
ACCESSION   DASEAA010000434 DASEAA010000000
VERSION     DASEAA010000434.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1760)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1760)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1760
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.guided.288"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            137..1708
                     /gene="abc-f"
                     /locus_tag="U0342_003192"
     CDS             137..1708
                     /gene="abc-f"
                     /locus_tag="U0342_003192"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:NP_464445.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="ABC-F type ribosomal protection protein"
                     /protein_id="HEM2424497.1"
                     /translation="MSTIEINQLKIEVADRVLVEIPHLLVSKKARIGIIGQNGLGKTT
                     LMEVIAGAKEATSGTVTTQGKLAYIKQLSTDTSTKSGGEKTRKAIQHAMRQNPSVLLA
                     DEPTSNLDVESVKHLERQWSDFHGALIIISHDRTFLDALCTEIWEIKNQKIHVYKGNY
                     HAYLEQKQQQENQAELVYKEFKNKKQQLQASQTHHEIEAGRIVKPGKRLNNKEASAFK
                     AGKGTQQKKQHSTIKALEKRIERLGNVEKPHTTKPIKMITPDNRVIKKGNTILSVKET
                     TYEIAGRKLFETKAFSIKAGDKVALIGENASGKTTFLKEIIQENPNLLCNPQAKIAYF
                     DQELNGLNQTKSLLENISEISVQTKQVNREVLGSMHFKESDLHKEVRMLSGGERVKLL
                     LSMLLVSDANFLILDEPTNYLDIYAMEALETLIKQFAGTVLFVSHDRTFVNHVAEQLL
                     VIENNEMTFHRMTFAEYEESKAPSRITEEDKLILEMRMSEIAAKLMQPNLKPTEKAML
                     EQDYQEIITKRQQFS"
BASE COUNT          672 a          352 c          327 g          409 t
ORIGIN      
        1 atccaattct cggatagaaa ctattttttc ggacgggatt cgtatgttca tttcgcatga
       61 taactctttg ctacaggcct ttttttggcg tagcctcgcg gattcctctc tgaaaatatt
      121 caggaggtta ttttttatgt ctacaatcga aataaatcaa ttaaaaatag aagtagcaga
      181 tagagtttta gtagaaattc ctcatctgct agttagtaaa aaagcaagaa tcggcatcat
      241 cggtcaaaat ggtctaggaa aaacaacgct aatggaagtg attgctggcg ctaaagaagc
      301 aacatctggc acggtgacta cccaaggaaa acttgcttac atcaaacaac tttccactga
      361 tacaagtacg aaaagcggcg gcgaaaaaac aagaaaagca attcaacatg cgatgcgcca
      421 aaacccaagt gttctcctag cagatgaacc gacaagcaac ctcgatgtcg aaagcgtcaa
      481 acatttagaa cgtcagtgga gcgatttcca cggtgcgctc ataattatat cgcatgaccg
      541 taccttttta gatgcacttt gtacagaaat atgggaaatc aaaaaccaaa aaattcacgt
      601 atacaaagga aactaccacg cgtatttaga acaaaaacaa caacaagaaa accaagcgga
      661 actcgtatac aaagaattta aaaacaaaaa gcaacaacta caagcctccc aaacacacca
      721 tgaaatcgaa gcaggtcgca ttgtcaaacc tggaaaacgc ctaaacaaca aagaagccag
      781 cgcgtttaaa gccggaaaag gcacacaaca aaagaaacaa cacagtacca tcaaagcttt
      841 agaaaaacga attgaacggc tcggcaatgt cgaaaaacca catacaacta aaccaatcaa
      901 aatgatcacc ccagacaatc gcgtcataaa aaaaggtaat acgatactaa gtgtcaaaga
      961 aacaacctac gagatcgcag gacgaaaact atttgaaaca aaagcttttt ctattaaagc
     1021 aggggataaa gtggcgctaa tcggtgaaaa tgcgagcggg aaaactacat ttttaaaaga
     1081 aataatccaa gaaaatccta atctcctatg taatccccaa gcgaaaattg cttatttcga
     1141 ccaagaattg aatggattaa accaaacgaa atccctgtta gaaaacatct cggaaattag
     1201 cgttcaaacc aagcaagtaa acagagaagt actaggtagc atgcatttta aagaaagcga
     1261 tttgcataag gaagtgcgca tgctctctgg cggggaacga gtgaagttgc tgctcagtat
     1321 gctcctcgtt agtgacgcca atttcttgat tcttgatgaa ccaaccaact atttggatat
     1381 ctatgcaatg gaagcgctgg aaacgttaat caaacaattt gcggggacag tactattcgt
     1441 ttcgcatgat agaacttttg ttaaccacgt ggcagaacaa ttactcgtca tcgaaaataa
     1501 tgaaatgact ttccaccgga tgactttcgc ggaatatgaa gaaagtaaag cgccaagtcg
     1561 catcacagaa gaagataagt tgattttaga aatgcgcatg tcagaaattg cagccaagct
     1621 tatgcaaccg aatttaaagc ccacagaaaa agccatgctc gaacaagatt atcaagaaat
     1681 tatcacaaaa agacaacaat ttagttaaat tgttgtcttt ttattcaagc taaataaaaa
     1741 atatagtcat ttatatttta
//
LOCUS       DASEAA010000435         1462 bp    DNA     linear   BCT 08-DEC-2023
DEFINITION  TPA_asm: Listeria monocytogenes strain ST6 isolate IG01152692-LMO
            SAMN38562821-rid20481423.guided.306, whole genome shotgun sequence.
ACCESSION   DASEAA010000435 DASEAA010000000
VERSION     DASEAA010000435.1
DBLINK      BioProject: PRJNA514245
            BioSample: SAMN38562821
            Sequence Read Archive: SRR27013187
KEYWORDS    WGS; Third Party Data; TPA; TPA:assembly.
SOURCE      Listeria monocytogenes
  ORGANISM  Listeria monocytogenes
            Bacteria; Bacillota; Bacilli; Bacillales; Listeriaceae; Listeria.
REFERENCE   1  (bases 1 to 1462)
  AUTHORS   Souvorov,A., Agarwala,R. and Lipman,D.J.
  TITLE     SKESA: strategic k-mer extension for scrupulous assemblies
  JOURNAL   Genome Biol 19 (1), 153 (2018)
   PUBMED   30286803
  REMARK    Publication Status: Online-Only
REFERENCE   2  (bases 1 to 1462)
  CONSRTM   NCBI Pathogen Detection Project
  TITLE     Direct Submission
  JOURNAL   Submitted (06-DEC-2023) National Center for Biotechnology
            Information, National Library of Medicine, National Institutes of
            Health, Bldg 45, Center Drive, Bethesda, MD, USA
COMMENT     The annotation was added by the assembly submitters using the NCBI
            Prokaryotic Genome Annotation Pipeline (PGAP). Information about
            stand-alone PGAP can be found here: https://github.com/ncbi/pgap/
            This draft WGS assembly was generated by running SKESA to generate
            a de-novo assembly. The de-novo assembly was then concatenated with
            contigs generated using a guided assembler using antimicrobial
            resistance genes as baits to comprehensively catalog the set of
            resistance genes in the isolate. Note, some parts of the contigs
            derived from the guided assembler may overlap de-novo contigs, and
            other guided assembler contigs. De-novo contigs can be
            differentiated from guided assembler contigs by their names , which
            include either 'denovo' or 'guided'.
            
            ##Genome-Assembly-Data-START##
            Assembly Date         :: 06-DEC-2023
            Assembly Method       :: SKESA v. 2.2
            Assembly Name         :: PDT002014376.1
            Long Assembly Name    :: NCBI Pathogen Detection Assembly
                                     PDT002014376.1
            Genome Coverage       :: 70x
            Sequencing Technology :: ILLUMINA
            ##Genome-Assembly-Data-END##
            
            ##Genome-Annotation-Data-START##
            Annotation Date                   :: 12/06/2023 12:22:36
            Annotation Method                 :: Best-placed reference protein
                                                 set; GeneMarkS-2+
            Annotation Pipeline               :: NCBI Prokaryotic Genome
                                                 Annotation Pipeline (PGAP)
            Annotation Provider               :: NCBI
            Features Annotated                :: Gene; CDS; rRNA; tRNA; ncRNA;
                                                 repeat_region
            Annotation Software revision      :: 2021-01-11.build5132
            Genes (total)                     :: 3,194
            CDSs (total)                      :: 3,137
            Genes (coding)                    :: 3,117
            CDSs (with protein)               :: 3,117
            Genes (RNA)                       :: 57
            rRNAs                             :: 1, 1, 3 (5S, 16S, 23S)
            complete rRNAs                    :: 1 (16S)
            partial rRNAs                     :: 1, 3 (5S, 23S)
            tRNAs                             :: 48
            ncRNAs                            :: 4
            Pseudo Genes (total)              :: 20
            CDSs (without protein)            :: 20
            Pseudo Genes (ambiguous residues) :: 0 of 20
            Pseudo Genes (frameshifted)       :: 10 of 20
            Pseudo Genes (incomplete)         :: 7 of 20
            Pseudo Genes (internal stop)      :: 5 of 20
            Pseudo Genes (multiple problems)  :: 2 of 20
            ##Genome-Annotation-Data-END##
FEATURES             Location/Qualifiers
     source          1..1462
                     /organism="Listeria monocytogenes"
                     /mol_type="genomic DNA"
                     /submitter_seqid="SAMN38562821-rid20481423.guided.306"
                     /strain="ST6"
                     /serotype="4b"
                     /isolate="IG01152692-LMO"
                     /host="Homo sapiens"
                     /db_xref="taxon:1639"
                     /country="South Africa: Gauteng"
                     /collection_date="2018"
                     /note="genotype: 6"
     gene            361..924
                     /locus_tag="U0342_003193"
     CDS             361..924
                     /locus_tag="U0342_003193"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_002078386.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="TetR family transcriptional regulator"
                     /protein_id="HEM2424498.1"
                     /translation="MEVIMSISKHANKKKNILIAASEIVKEEGVVKLTLEAVAQRAGV
                     SKGGLLYHFPSKEALIKGMVEDWINNYFECINTLVNNDDDNAIGKWNRAYLKSTFSDL
                     ENNNLNSALMAAMFINPDLLDEFRQRYDILHTKLITDGIDPVKITITRLSIDGLWFSE
                     IFGMAPLNEELKTQVFDELINMIQEDE"
     gene            924..1301
                     /gene="qacH"
                     /locus_tag="U0342_003194"
     CDS             924..1301
                     /gene="qacH"
                     /locus_tag="U0342_003194"
                     /inference="COORDINATES: similar to AA
                     sequence:RefSeq:WP_000121134.1"
                     /note="Derived by automated computational analysis using
                     gene prediction method: Protein Homology."
                     /codon_start=1
                     /transl_table=11
                     /product="quaternary ammonium compound efflux SMR
                     transporter QacH"
                     /protein_id="HEM2424499.1"
                     /translation="MSYLYLALAIVGEIIGSSLLKASEGFSKLYPTIGVIIAFVGCFF
                     FLSLSLKTIPLNTAYALWAGLGLVLTTVISVLVWKEKLNMASIAGITLILVGVVILNL
                     FGPGHGESGHEASETITMNETME"
BASE COUNT          520 a          200 c          268 g          474 t
ORIGIN      
        1 agcttacatt tctatgcaaa aggaaaactt agtggaaact aaagaagatc attggctgat
       61 aggataaaaa taaaagacat tctttgaatg tcttttttta aattaaagtt taaataactc
      121 tgtaaggggt agagtcctga aaatgcggat ttacaacggt aatgtaattt tcacccataa
      181 ataaagccga ttttaagaaa tcgactgttg aactaaagct ccctttactt taagtacatt
      241 tcttcacaat ctttagatta atttattgga ttatttttat gtgaaagagt gatattaaat
      301 aagagcttta attcgattga caaaaaaccg tccagacggt atattatatg tatctaagtt
      361 atggaggtta ttatgtctat ttcaaagcat gctaataaga aaaaaaatat attgattgct
      421 gcatctgaaa ttgtaaaaga agaaggagtt gtcaaactca cattagaggc agtcgcccaa
      481 agagctggcg tgagtaaagg tggattatta taccattttc ctagcaagga agcattaatt
      541 aaaggaatgg tggaagattg gataaataat tatttcgaat gcattaatac gttagttaat
      601 aacgacgatg ataacgcaat aggaaaatgg aatagggctt atcttaaatc tacattttcc
      661 gatttagaaa acaataatct aaattccgca ctaatggctg ctatgtttat taatccagat
      721 ttattagatg aattccggca gagatacgat attttgcata caaagttaat aactgatgga
      781 attgatcctg tcaaaataac aattacaaga ttatccatag atggtctttg gttttcagaa
      841 atatttggaa tggcaccatt aaatgaagaa ctaaaaacac aagtttttga tgaactaata
      901 aacatgattc aggaggacga ataatgtcat atctatattt agcacttgca atagtggggg
      961 agattattgg ctcttcccta ttaaaagcat ctgaaggctt ttcaaaactc tatcctacaa
     1021 taggggtaat aatagctttc gttggttgtt ttttcttttt atccttgtcg ctaaaaacaa
     1081 tccccttaaa cactgcatat gcattatggg caggtttagg acttgttttg actacagtaa
     1141 tttcagtttt agtttggaag gaaaaactta acatggctag cattgcagga ataacactga
     1201 ttcttgtagg agttgtaata ttgaatttgt ttggaccagg acatggagaa tctggtcatg
     1261 aagcaagcga aactattaca atgaatgaga caatggaata acacataaaa aagtccttct
     1321 taataaagag aaggactttt tagcttaatt aagggtattt tttgaagtcc ttattcaaca
     1381 aacctgcgta cgttagttta agtgtatcac ttcacaattc caatagagta gagtttattg
     1441 agacataatg aaattagcgt tt
//
